Psyllid ID: psy13481

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MSGLTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSDAPKPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNLK
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHcHHHcccc
Coil and Loop (DISEMBL)
MSGLTPDAINKLQLFLGavkknpaifylpelkFFKDFVesyggtipppskaqsdapkpekpfttpepsapeeeseesdpeldntgvisepdeeepipdvatdievseedidksnEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGqsylqlskpnacirdCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKevtpnklnlk
Flexible Loop (DISEMBL)
MSGLTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTipppskaqsdapkpEKPFttpepsapeeeseesdpelDNTGvisepdeeepipdvatdievseedidksnekkrEAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDfdeqadewlkevtpnklnlk
Low Complexity Region (SEG)
MSGLTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSDApkpekpfttpepsapeeeseesdpeLDNTGVISepdeeepipdVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNLK
Disordered region (IsUnstruct)
*******AINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGG*******************************************************************************AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK**********
Disordered Region (DISOPRED)
******DAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGG****************************************************************EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKL*L*
Disordered Region (DISEMBL)
MSGLTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPP************************************TGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNLK
Disordered Region (DISPRO)
**GLTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTI*************************************NTGVISEP*EEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGLTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSDAPKPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
Q5ZLF0	361	Hsc70-interacting protein	yes	N/A	0.913	0.584	0.511	4e-57
Q99L47	371	Hsc70-interacting protein	yes	N/A	0.956	0.595	0.477	6e-53
Q86DS1	377	Hsc70-interacting protein	yes	N/A	0.935	0.572	0.474	1e-52
C4NYP8	377	Hsc70-interacting protein	yes	N/A	0.935	0.572	0.474	1e-52
P50502	369	Hsc70-interacting protein	yes	N/A	0.935	0.585	0.465	2e-52
Q5RF31	369	Hsc70-interacting protein	yes	N/A	0.935	0.585	0.465	2e-52
Q8IZP2	240	Putative protein FAM10A4	no	N/A	0.956	0.920	0.48	1e-51
P50503	368	Hsc70-interacting protein	no	N/A	0.956	0.600	0.469	2e-51
Q8NFI4	369	Putative protein FAM10A5	yes	N/A	0.935	0.585	0.452	4e-51
Q8VWG7	380	TPR repeat-containing thi	yes	N/A	0.948	0.576	0.437	1e-42

>sp|Q5ZLF0|F10A1_CHICK Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1

 Score =  221 bits (562), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 115/225 (51%), Positives = 156/225 (69%), Gaps = 14/225 (6%)

Query: 9   INKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPP-PSKAQSDAP-------KPEK 60
           + +L+ F+   K+NP + +  EL F +++VES GGTIPP P+   +D         +PE+
Sbjct: 6   LGELRAFVRLCKQNPGLLHTEELGFLREWVESMGGTIPPAPASTSTDETSKGKAEEQPEE 65

Query: 61  PFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREA 120
           P  +PEP     ESEESD E+DN GVI EPD ++P      ++EV+EE +D++NEKK EA
Sbjct: 66  PVKSPEP-----ESEESDLEIDNEGVI-EPDNDDPQEMGDENVEVTEEMMDQANEKKMEA 119

Query: 121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
           I+A ++G  + AVN +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A+KINPDS
Sbjct: 120 INALSEGDLQKAVNLFTDAIKLNPCLAILYAKRASVFVKLQKPNAAIRDCDRAIKINPDS 179

Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
           A  YK+RG+A+RLLG WEEAA DL  ACK+D+DE A   LKEV P
Sbjct: 180 AQTYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQP 224

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.
Gallus gallus (taxid: 9031)

>sp|Q99L47|F10A1_MOUSE Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1

 Score =  207 bits (526), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 157/226 (69%), Gaps = 5/226 (2%)

Query: 4   LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPS-KAQSDA-PKPEKP 61
           + P  +++L+ F+   +++P++ +  E++F +++VES GG +PP + KA+S+   K EK 
Sbjct: 1   MDPRKVSELRAFVKMCRQDPSVLHTEEMRFLREWVESMGGKVPPATHKAKSEENTKEEKR 60

Query: 62  FTTPEPSAPEEE--SEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKRE 119
             T E +   EE  SEESD E+DN GVI EPD + P      + E++EE +D++NEKK  
Sbjct: 61  DKTTEENIKTEELSSEESDLEIDNEGVI-EPDTDAPQEMGDENAEITEEMMDEANEKKGA 119

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           AI A NDG+ + A++ +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A++INPD
Sbjct: 120 AIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPD 179

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
           SA  YK+RG+A+RLLG WEEAA DL  ACK+D+DE A   L+EV P
Sbjct: 180 SAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLREVQP 225

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Mus musculus (taxid: 10090)

>sp|Q86DS1|F10A2_DROME Hsc70-interacting protein 2 OS=Drosophila melanogaster GN=HIP-R PE=1 SV=2

 Score =  206 bits (523), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/232 (47%), Positives = 154/232 (66%), Gaps = 16/232 (6%)

Query: 9   INKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPP----SKAQSDAP-------K 57
           + KL+ F+    +NP    +P+L+F KDFVE +GGT+PP       A    P       K
Sbjct: 10  LKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGGTVPPGQFNGGSAGGKCPFGGVAGAK 69

Query: 58  PEKPFTTPEPSAPEEESE--ESDPELDNTGVI-SEPDEEEPIPDVATDIEVSEEDIDKSN 114
             +P   PE S  E+     ESD ELD  GVI ++ D  +P+ + +   + +EE++++++
Sbjct: 70  ANEPANAPEDSEDEKSLSDPESDVELDMEGVIEADSDPAQPMGNYSK--KATEEEVEQAS 127

Query: 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVAL 174
           E + +A  AY   KF++A+  Y++AI+L+P +AL +AKRGQ++L+L KPNACIRDC VAL
Sbjct: 128 ELRAQAASAYGQQKFDEAIALYTKAIELSPGNALFHAKRGQAFLKLKKPNACIRDCDVAL 187

Query: 175 KINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
           ++N D AA YKFRGRA RLLG +E AA DLR ACK+DFDE+ DEWLKEVTPN
Sbjct: 188 ELNSDLAAGYKFRGRARRLLGDFELAAHDLRQACKLDFDEETDEWLKEVTPN 239

One HIP oligomer binds the ATPase domains of at least two Hsc70 molecules dependent on activation of the Hsc70 ATPase by Hsp40. Stabilizes the ADP state of Hsc70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of Hsc70 with various target proteins.

Drosophila melanogaster (taxid: 7227)

>sp|C4NYP8|F10A1_DROME Hsc70-interacting protein 1 OS=Drosophila melanogaster GN=HIP PE=1 SV=2

 Score =  206 bits (523), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/232 (47%), Positives = 154/232 (66%), Gaps = 16/232 (6%)

Query: 9   INKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPP----SKAQSDAP-------K 57
           + KL+ F+    +NP    +P+L+F KDFVE +GGT+PP       A    P       K
Sbjct: 10  LKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGGTVPPGQFNGGSAGGKCPFGGVAGAK 69

Query: 58  PEKPFTTPEPSAPEEESE--ESDPELDNTGVI-SEPDEEEPIPDVATDIEVSEEDIDKSN 114
             +P   PE S  E+     ESD ELD  GVI ++ D  +P+ + +   + +EE++++++
Sbjct: 70  ANEPANAPEDSEDEKSLSDPESDVELDMEGVIEADSDPAQPMGNYSK--KATEEEVEQAS 127

Query: 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVAL 174
           E + +A  AY   KF++A+  Y++AI+L+P +AL +AKRGQ++L+L KPNACIRDC VAL
Sbjct: 128 ELRAQAASAYGQQKFDEAIALYTKAIELSPGNALFHAKRGQAFLKLKKPNACIRDCDVAL 187

Query: 175 KINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
           ++N D AA YKFRGRA RLLG +E AA DLR ACK+DFDE+ DEWLKEVTPN
Sbjct: 188 ELNSDLAAGYKFRGRARRLLGDFELAAHDLRQACKLDFDEETDEWLKEVTPN 239

One HIP oligomer binds the ATPase domains of at least two Hsc70 molecules dependent on activation of the Hsc70 ATPase by Hsp40. Stabilizes the ADP state of Hsc70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of Hsc70 with various target proteins.

Drosophila melanogaster (taxid: 7227)

>sp|P50502|F10A1_HUMAN Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/232 (46%), Positives = 155/232 (66%), Gaps = 16/232 (6%)

Query: 4   LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPS-KAQS--------- 53
           + P  +N+L+ F+   K++P++ +  E++F +++VES GG +PP + KA+S         
Sbjct: 1   MDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKP 60

Query: 54  DAPKPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKS 113
           D+ K E+     EPS     SEESD E+D  GVI EPD + P      + E++EE +D++
Sbjct: 61  DSKKVEEDLKADEPS-----SEESDLEIDKEGVI-EPDTDAPQEMGDENAEITEEMMDQA 114

Query: 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
           N+KK  AI A NDG+ + A++ +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A
Sbjct: 115 NDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRA 174

Query: 174 LKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
           ++INPDSA  YK+RG+A+RLLG WEEAA DL  ACK+D+DE A   LKEV P
Sbjct: 175 IEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQP 226

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Homo sapiens (taxid: 9606)

>sp|Q5RF31|F10A1_PONAB Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/232 (46%), Positives = 155/232 (66%), Gaps = 16/232 (6%)

Query: 4   LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPS-KAQS--------- 53
           + P  +N+L+ F+   K++P++ +  E++F +++VES GG +PP + KA+S         
Sbjct: 1   MDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKP 60

Query: 54  DAPKPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKS 113
           D+ K E+     EPS     SEESD E+D  GVI EPD + P      + E++EE +D++
Sbjct: 61  DSKKVEEDLKADEPS-----SEESDLEIDKEGVI-EPDTDAPQEMGDENAEITEEMMDQA 114

Query: 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
           N+KK  AI A NDG+ + A++ +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A
Sbjct: 115 NDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRA 174

Query: 174 LKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
           ++INPDSA  YK+RG+A+RLLG WEEAA DL  ACK+D+DE A   LKEV P
Sbjct: 175 IEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQP 226

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Pongo abelii (taxid: 9601)

>sp|Q8IZP2|ST134_HUMAN Putative protein FAM10A4 OS=Homo sapiens GN=ST13P4 PE=5 SV=1

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/225 (48%), Positives = 151/225 (67%), Gaps = 4/225 (1%)

Query: 4   LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSDAPKPEKPFT 63
           + P  +N+L+ F+   KK+P+I +  E++F +++VES GGT    +K++ +  K EKP +
Sbjct: 1   MDPRKVNELRAFVKMCKKDPSILHTQEMRFLREWVESMGGTATQKAKSEENT-KEEKPDS 59

Query: 64  TPEP--SAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAI 121
             E    A E  SEESD E+D  GVI EPD + P      + E++EE +D++N+KK  AI
Sbjct: 60  KVEEDLKADEPSSEESDLEIDKEGVI-EPDTDAPQEMGDENAEITEEVMDQANDKKVAAI 118

Query: 122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
            A NDG+ + A++ +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A++INPDSA
Sbjct: 119 EALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSA 178

Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
             YK RG+A+RLLG WEEAA DL  ACK D+DE A   LKEV P 
Sbjct: 179 QPYKRRGKAHRLLGHWEEAAHDLALACKFDYDEDASAMLKEVQPR 223

Homo sapiens (taxid: 9606)

>sp|P50503|F10A1_RAT Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1

 Score =  201 bits (512), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/226 (46%), Positives = 155/226 (68%), Gaps = 5/226 (2%)

Query: 4   LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPS-KAQSDA-PKPEKP 61
           + P  +++L+ F+   +++P++ +  E++F +++VES GG +PP + KA+S+   K EK 
Sbjct: 1   MDPRKVSELRAFVKMCRQDPSVLHTEEMRFLREWVESMGGKVPPATHKAKSEENTKEEKR 60

Query: 62  FTTPEPSAPEEE--SEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKRE 119
             T E +   EE  SEESD E+DN GVI E D + P      + E++E  +D++NEKK  
Sbjct: 61  DKTTEDNIKTEEPSSEESDLEIDNEGVI-EADTDAPQEMGDENAEITEAMMDEANEKKGA 119

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           AI A NDG+ + A++ +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A++INPD
Sbjct: 120 AIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPD 179

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
           SA  YK+RG+A+RLLG WEEAA DL  ACK+D+DE A   L+EV P
Sbjct: 180 SAQPYKWRGKAHRLLGHWEEAARDLALACKLDYDEDASAMLREVQP 225

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q8NFI4|F10A5_HUMAN Putative protein FAM10A5 OS=Homo sapiens GN=ST13P5 PE=5 SV=1

 Score =  201 bits (510), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/232 (45%), Positives = 155/232 (66%), Gaps = 16/232 (6%)

Query: 4   LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPS-KAQS--------- 53
           + P  +N+L+ F+   K++P++ +  E++F +++VES GG +PP + KA+S         
Sbjct: 1   MDPCKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKP 60

Query: 54  DAPKPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKS 113
           D+ K E+     EPS     +EESD E+D  GVI EPD + P      ++E++EE +D++
Sbjct: 61  DSKKVEEDLKADEPS-----TEESDLEIDKEGVI-EPDTDAPQEMGDENVEITEEMMDQA 114

Query: 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
           N+KK  AI   NDG+ + A++ +++AIKLNP  A+LYAKR   +++L KPNA I+DC  A
Sbjct: 115 NDKKVAAIEVLNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIQDCDRA 174

Query: 174 LKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
           ++INPDSA  YK+RG+A+RLLG WEEAA DL  ACK+D+DE A   LKEV P
Sbjct: 175 IEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAFACKLDYDEDASAMLKEVQP 226

Homo sapiens (taxid: 9606)

>sp|Q8VWG7|TDX_ARATH TPR repeat-containing thioredoxin TDX OS=Arabidopsis thaliana GN=TDX PE=1 SV=1

 Score =  173 bits (438), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/224 (43%), Positives = 144/224 (64%), Gaps = 5/224 (2%)

Query: 7   DAIN--KLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSD-APKPE-KPF 62
           DAI   +L+ F+  +K NP+I + P L FFK+++ S G  +P   K + D   K E KP 
Sbjct: 3   DAIQVAELRRFVEQLKLNPSILHDPSLVFFKEYLRSLGAQVPKIEKTERDYEDKAETKPS 62

Query: 63  TTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIH 122
            +P+    +++  ESD ELDN+ V+ EPD E P P      EV++E+ D +  +K +A+ 
Sbjct: 63  FSPKHDDDDDDIMESDVELDNSDVV-EPDNEPPQPMGDPTAEVTDENRDDAQSEKSKAME 121

Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
           A +DG+F++A+   ++A+ LNP+SA+LYA R   +L++ KPNA IRD +VAL+ N DSA 
Sbjct: 122 AISDGRFDEAIEHLTKAVMLNPTSAILYATRASVFLKVKKPNAAIRDANVALQFNSDSAK 181

Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
            YK RG A  +LG+WEEAA DL  A K+D+DE+    LK+V PN
Sbjct: 182 GYKSRGMAKAMLGQWEEAAADLHVASKLDYDEEIGTMLKKVEPN 225

Thiol-disulfide oxidoreductase that possesses insulin disulfide bonds reducing activity, disulfide reductase, foldase chaperone and holdase chaperone activities. Heat shock causes oligomerization and formation of high molecular weiht (HMW) complexes with concomitant functional switching from a disulfide reductase and foldase chaperone to a holdase chaperone. May interact with HSP70 proteins through the TPR repeats.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
242006714	240	Hsc70-interacting protein, putative [Ped	0.974	0.937	0.585	2e-63
91093306	376	PREDICTED: similar to AGAP009119-PA [Tri	0.917	0.563	0.544	2e-60
158299854	397	AGAP009119-PA [Anopheles gambiae str. PE	0.948	0.551	0.535	2e-58
307179444	270	Hsc70-interacting protein [Camponotus fl	0.961	0.822	0.520	2e-56
157130823	394	hypothetical protein AaeL_AAEL011881 [Ae	0.952	0.558	0.541	3e-56
71896903	361	hsc70-interacting protein [Gallus gallus	0.913	0.584	0.511	2e-55
170029397	374	conserved hypothetical protein [Culex qu	0.887	0.548	0.565	3e-55
321463137	240	hypothetical protein DAPPUDRAFT_307492 [	0.917	0.883	0.511	6e-55
195131867	411	GI14722 [Drosophila mojavensis] gi|19390	0.930	0.523	0.519	2e-54
345493108	354	PREDICTED: hsc70-interacting protein-lik	0.948	0.618	0.519	1e-53

>gi|242006714|ref|XP_002424192.1| Hsc70-interacting protein, putative [Pediculus humanus corporis] gi|212507533|gb|EEB11454.1| Hsc70-interacting protein, putative [Pediculus humanus corporis]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/227 (58%), Positives = 171/227 (75%), Gaps = 2/227 (0%)

Query: 4   LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPP-SKAQSDAPKPEKPF 62
           L+ D +  L+LF+   KK+  I + P+L FFK+++ES GG +PP   K   +  + E   
Sbjct: 5   LSADHLKNLKLFIDVCKKDANILHHPDLNFFKNYIESLGGVVPPKKCKESKENIETEVKD 64

Query: 63  TTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIH 122
              +P   E ESEES+ ELD  GVI EPD + P P   T+ EV+E+DI+KS+E+KR AI 
Sbjct: 65  EKTKPDVEEVESEESEVELDYEGVI-EPDNDPPQPMGYTNQEVTEDDINKSDERKRAAIE 123

Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
            + + K+E+A+NAY+EAI LNP+SA+L+AKRGQ YLQL+KPNAC+RDC+ AL+INPDSAA
Sbjct: 124 LFCEQKYEEAINAYTEAILLNPNSAMLHAKRGQCYLQLNKPNACVRDCTRALEINPDSAA 183

Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN 229
           AYKFRGRA+RLLG + +AA DLRNACKIDFDEQADEWLKEVTPNK N
Sbjct: 184 AYKFRGRAHRLLGNFVKAAEDLRNACKIDFDEQADEWLKEVTPNKFN 230

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093306|ref|XP_967617.1| PREDICTED: similar to AGAP009119-PA [Tribolium castaneum] gi|270014189|gb|EFA10637.1| hypothetical protein TcasGA2_TC016274 [Tribolium castaneum]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/224 (54%), Positives = 167/224 (74%), Gaps = 12/224 (5%)

Query: 7   DAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSDAPKPEKPFTTPE 66
           +A++KL+ F+   K NP I  LP+L FFK+F+ES+GG +PPPSK  S+AP         E
Sbjct: 8   EALDKLKQFIDVCKSNPDILSLPDLNFFKEFIESFGGKVPPPSKMSSEAPN-----ARAE 62

Query: 67  PSAPEEESE-ESDPELDNTGVISEPD---EEEPIPDVATDIEVSEEDIDKSNEKKREAIH 122
             A + ESE ESD ELD  G + EPD   E + + D   + +V+EE+ DKS+EK+ EA+ 
Sbjct: 63  DVASDAESEPESDLELDTEGCV-EPDPLDENQKMGD--PNKKVTEEESDKSDEKRMEAMG 119

Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
            +++G ++ A+  ++EAI+LNPSSALL+AKRGQ++L+ +KPNACI+DC+ AL++NPDSAA
Sbjct: 120 QFSEGNYDKAIELFTEAIELNPSSALLFAKRGQAFLKQTKPNACIKDCTRALELNPDSAA 179

Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
           A+KFRGRA+ L+G+WE+AA DLR AC IDFDEQ DEWLK VTPN
Sbjct: 180 AFKFRGRAFSLIGEWEKAAKDLRQACNIDFDEQTDEWLKAVTPN 223

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299854|ref|XP_319871.4| AGAP009119-PA [Anopheles gambiae str. PEST] gi|157013718|gb|EAA14705.5| AGAP009119-PA [Anopheles gambiae str. PEST]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/224 (53%), Positives = 156/224 (69%), Gaps = 5/224 (2%)

Query: 4   LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSDAPKPEKPFT 63
           + P  + KL++F+   +  P +  LP+L+F K F+ES GG +P   + Q D         
Sbjct: 5   INPAELQKLKVFINLCQMTPQLLNLPQLEFLKSFIESLGGKVP---EGQPDLAGMMGGQK 61

Query: 64  TPEPSAPEEESE-ESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIH 122
            P   A   ES+ ESD ELDN G + EPD E   P    D E +EE+ D++N+ + +A  
Sbjct: 62  APTGDAAAPESDPESDLELDNEGCV-EPDTEPDQPMGVADKEPTEEEFDQANDLRAQAAA 120

Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
           AY++ K+++AV  ++EAI+LNP SAL YAKRGQ+YL+L KPNACIRDC+ AL+INPDSA 
Sbjct: 121 AYSEQKYDEAVKLFTEAIQLNPKSALYYAKRGQAYLKLQKPNACIRDCNRALEINPDSAT 180

Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
           AYKFRGRA RLLG+WEEAA DLR ACK+DFDE+ADEWLKEVTPN
Sbjct: 181 AYKFRGRANRLLGRWEEAAKDLRQACKLDFDEEADEWLKEVTPN 224

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179444|gb|EFN67768.1| Hsc70-interacting protein [Camponotus floridanus]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/223 (52%), Positives = 151/223 (67%), Gaps = 1/223 (0%)

Query: 4   LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSDAPKPEKPFT 63
            T +  N+L+       K+P++ Y P+L F K  +E YGG +P   +A S +    +  +
Sbjct: 3   FTEEITNQLEELARQCIKDPSLLYNPKLLFIKQLIEHYGGKVPQAKEANSSSDAKCEFQS 62

Query: 64  TPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHA 123
            P    P+ ESEESD ELD TGVI EPD E P       ++ +EE+I +S  K+ EA+ A
Sbjct: 63  KPAEPQPDSESEESDLELDMTGVI-EPDSESPQKMGNLTLQPTEEEIAESQTKRSEAVSA 121

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
           + +  +E A+  Y+EAI LNP  ALLYAKRGQ +L L KPNACIRDC  A+++NPD+AAA
Sbjct: 122 FMEKDYEKAIQFYTEAIVLNPHVALLYAKRGQIFLLLKKPNACIRDCDRAIELNPDNAAA 181

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
           +KFRGRAY LLGK+EEAA DLR ACK+DFDEQADEWL+E TPN
Sbjct: 182 HKFRGRAYHLLGKFEEAANDLRLACKLDFDEQADEWLRETTPN 224

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130823|ref|XP_001655769.1| hypothetical protein AaeL_AAEL011881 [Aedes aegypti] gi|108871775|gb|EAT36000.1| AAEL011881-PA [Aedes aegypti]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 123/227 (54%), Positives = 155/227 (68%), Gaps = 7/227 (3%)

Query: 4   LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIP--PPSKAQSDAPKPEKP 61
           + P  + KL +F+      P +  LP+L FFK FVE  GGT+P   P    +     E  
Sbjct: 5   IDPAELKKLNIFVDLCAAQPQLLNLPQLAFFKSFVEKLGGTVPEGQPDFGGAQPKTEEPK 64

Query: 62  FTTPEPSAPEEESEESDPELDNTGVISEPDEE--EPIPDVATDIEVSEEDIDKSNEKKRE 119
               +P   EE   ESD ELD  G + EPD E  +P+ D +   E SE+DIDK+NE + +
Sbjct: 65  KEEEQPEKKEESDPESDIELDMEGCV-EPDNEPEQPMGDASK--EPSEDDIDKANELRSK 121

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           A  AY++  +E+AV  ++EAI+LNP SAL + KRGQ+YL+LSKPNACIRDC+ AL+INPD
Sbjct: 122 AAAAYSEQNYEEAVKLFTEAIELNPRSALYHGKRGQAYLKLSKPNACIRDCTRALEINPD 181

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
           SA AYKFRGRA RLLGKWEEAA DLR ACK+D+DE+ADEWLKEVTPN
Sbjct: 182 SATAYKFRGRANRLLGKWEEAAKDLRQACKLDYDEEADEWLKEVTPN 228

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|71896903|ref|NP_001025928.1| hsc70-interacting protein [Gallus gallus] gi|78099250|sp|Q5ZLF0.1|F10A1_CHICK RecName: Full=Hsc70-interacting protein; Short=Hip; AltName: Full=Protein FAM10A1; AltName: Full=Protein ST13 homolog gi|53130129|emb|CAG31443.1| hypothetical protein RCJMB04_6h13 [Gallus gallus]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 115/225 (51%), Positives = 156/225 (69%), Gaps = 14/225 (6%)

Query: 9   INKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPP-PSKAQSDAP-------KPEK 60
           + +L+ F+   K+NP + +  EL F +++VES GGTIPP P+   +D         +PE+
Sbjct: 6   LGELRAFVRLCKQNPGLLHTEELGFLREWVESMGGTIPPAPASTSTDETSKGKAEEQPEE 65

Query: 61  PFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREA 120
           P  +PEP     ESEESD E+DN GVI EPD ++P      ++EV+EE +D++NEKK EA
Sbjct: 66  PVKSPEP-----ESEESDLEIDNEGVI-EPDNDDPQEMGDENVEVTEEMMDQANEKKMEA 119

Query: 121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
           I+A ++G  + AVN +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A+KINPDS
Sbjct: 120 INALSEGDLQKAVNLFTDAIKLNPCLAILYAKRASVFVKLQKPNAAIRDCDRAIKINPDS 179

Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
           A  YK+RG+A+RLLG WEEAA DL  ACK+D+DE A   LKEV P
Sbjct: 180 AQTYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQP 224

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170029397|ref|XP_001842579.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167862410|gb|EDS25793.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 121/214 (56%), Positives = 152/214 (71%), Gaps = 9/214 (4%)

Query: 21  KNPAIFYLPELKFFKDFVESYGGTIP--PPSKAQSDAPKP----EKPFTTPEPSA-PEEE 73
           + P +  LP+L FFK FVE  GG +P   PS A +    P    E     PEP A  +E+
Sbjct: 2   QQPELLNLPQLDFFKAFVEKLGGKVPEGTPSFAGAHKAGPKEGEEAKKAAPEPEADKKED 61

Query: 74  SE-ESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDA 132
           SE ESD ELDN G + EPD E   P    + E SEE++D++N+ + +A  AY++  +E++
Sbjct: 62  SEPESDVELDNEGCV-EPDNEPEQPMGDAEKEPSEEELDQANDLRSKAAAAYSEQNYEES 120

Query: 133 VNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR 192
           V  ++EAI++N  SAL YAKRGQ+YL+L KPNACIRDC+ AL+INPDSA AYKFRGRA R
Sbjct: 121 VKLFTEAIQINSRSALYYAKRGQAYLKLVKPNACIRDCNRALEINPDSATAYKFRGRANR 180

Query: 193 LLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
           LLGKWEEAA DLR ACK+DFDE+ADEWLKEVTPN
Sbjct: 181 LLGKWEEAAKDLRQACKLDFDEEADEWLKEVTPN 214

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321463137|gb|EFX74155.1| hypothetical protein DAPPUDRAFT_307492 [Daphnia pulex]

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 116/227 (51%), Positives = 156/227 (68%), Gaps = 15/227 (6%)

Query: 9   INKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSDAPKPEKPFTTP--- 65
           + +L+ F+  +K  P++  LPEL+F KD++ES GG IP      +D PK E P + P   
Sbjct: 11  LTELRAFVTLLKSQPSMLLLPELQFLKDYIESLGGKIP-----SADIPKTEIPKSCPAHE 65

Query: 66  --EPSAPEEESE----ESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKRE 119
             + S P E+ E    ESD ELD TGVI EPD + P      D E+SE D +K +E +++
Sbjct: 66  SHKSSKPAEDEEPELVESDVELDQTGVI-EPDNDSPQEMGNPDQEMSESDEEKLSEIRQQ 124

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           A  A+ DG +E A   ++EAI+LN  SAL++AKR   Y+ L+KPNACIRDC+ A+++NPD
Sbjct: 125 ATAAFADGDYEKAAGFFTEAIQLNSQSALMFAKRANCYIHLNKPNACIRDCNRAIELNPD 184

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
           SA A+KFRGRA+RLLG WEEA  DLR ACKID+D+QA++WLKEVTPN
Sbjct: 185 SAPAHKFRGRAHRLLGNWEEAVKDLRLACKIDYDDQANDWLKEVTPN 231

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195131867|ref|XP_002010366.1| GI14722 [Drosophila mojavensis] gi|193908816|gb|EDW07683.1| GI14722 [Drosophila mojavensis]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/231 (51%), Positives = 157/231 (67%), Gaps = 16/231 (6%)

Query: 11  KLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPP-----PSKAQ----SDAPKPEKP 61
           KL+ F+  V  NP +  +P+L+F KDFVE +GG +P      P   +     DA    KP
Sbjct: 12  KLKGFIDFVNANPTVLNMPQLQFVKDFVEKFGGKVPEGDFKMPDAGKCPFGGDAGSKAKP 71

Query: 62  -FTTPEPSAPEEESE-----ESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNE 115
            FT  + S   +E       ESD ELD  GVI E D E   P   ++   +EE+ID+++E
Sbjct: 72  AFTAADDSDKSDEDASVSEPESDVELDMEGVI-EADNEPAQPMGDSEKVPTEEEIDQASE 130

Query: 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
            + +A  AY+  KF++A+N Y++AI+LNP +AL YAKRGQ++L+L KPNACIRDC  AL+
Sbjct: 131 LRGQAAAAYSQQKFDEAINHYTKAIELNPGNALFYAKRGQAFLKLKKPNACIRDCDKALE 190

Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
           +N DSAAAYKFRGRA RLLGK+EEAA DLR ACK+DFDE+ADEWL+EVTPN
Sbjct: 191 LNCDSAAAYKFRGRANRLLGKFEEAAKDLRQACKLDFDEEADEWLREVTPN 241

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493108|ref|XP_003427005.1| PREDICTED: hsc70-interacting protein-like [Nasonia vitripennis]

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 119/229 (51%), Positives = 161/229 (70%), Gaps = 10/229 (4%)

Query: 4   LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSDAPKPEKPF- 62
           ++ + + + ++F+    K P+I   P+L FFK+FVE  GG +P   KA+ D     + F 
Sbjct: 5   ISSELLTQFKVFIELCNKQPSIINHPDLAFFKNFVERLGGKVP---KAEKDDEDTRESFD 61

Query: 63  -----TTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKK 117
                       PE ESEES+ ELD TGVI EPD + P P   +D++ +EE I++S+EK+
Sbjct: 62  KEAKAEPEPEPEPEPESEESEVELDMTGVI-EPDNDPPQPMGDSDLQPTEEQIEESHEKR 120

Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177
            +A+ A+ +  +E A+  Y+EAI+LNP ++LLYAKRGQ YL L+KPNACIRDC+ AL++N
Sbjct: 121 SQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELN 180

Query: 178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
           PDSAAA+KFRGRA +LLGK+EEA  DLR ACK DFDEQADEWL+EVTPN
Sbjct: 181 PDSAAAHKFRGRANQLLGKFEEATNDLRKACKFDFDEQADEWLREVTPN 229

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
UNIPROTKB|Q5ZLF0	361	ST13 "Hsc70-interacting protei	0.935	0.598	0.45	5e-44
FB|FBgn0260484	377	HIP "Hsc/Hsp70-interacting pro	0.939	0.575	0.424	2.8e-43
FB|FBgn0029676	377	HIP-R "Hsc/Hsp70-interacting p	0.939	0.575	0.424	2.8e-43
MGI|MGI:1917606	371	St13 "suppression of tumorigen	0.956	0.595	0.402	2.5e-42
UNIPROTKB|A7E3S8	369	ST13 "Uncharacterized protein"	0.956	0.598	0.405	4e-42
UNIPROTKB|P50502	369	ST13 "Hsc70-interacting protei	0.956	0.598	0.405	5.2e-42
RGD|621312	368	St13 "suppression of tumorigen	0.956	0.600	0.398	8.4e-42
UNIPROTKB|Q8NFI4	369	ST13P5 "Putative protein FAM10	0.956	0.598	0.396	1.7e-41
UNIPROTKB|Q8IZP2	240	ST13P4 "Putative protein FAM10	0.956	0.920	0.408	2.8e-41
WB|WBGene00011735	422	hip-1 [Caenorhabditis elegans	0.948	0.518	0.399	4.8e-39

UNIPROTKB|Q5ZLF0 ST13 "Hsc70-interacting protein" [Gallus gallus (taxid:9031)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 99/220 (45%), Positives = 134/220 (60%)

Query:     9 INKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPP-PSKAQSDAXXXXXXXXXXXX 67
             + +L+ F+   K+NP + +  EL F +++VES GGTIPP P+   +D             
Sbjct:     6 LGELRAFVRLCKQNPGLLHTEELGFLREWVESMGGTIPPAPASTSTDETSKGKAEEQPEE 65

Query:    68 XXXXXXXXXXXXXL--DNTGVISXXXXXXXXXXVATDIEVSEEDIDKSNEKKREAIHAYN 125
                          L  DN GVI              ++EV+EE +D++NEKK EAI+A +
Sbjct:    66 PVKSPEPESEESDLEIDNEGVIEPDNDDPQEMG-DENVEVTEEMMDQANEKKMEAINALS 124

Query:   126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185
             +G  + AVN +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A+KINPDSA  YK
Sbjct:   125 EGDLQKAVNLFTDAIKLNPCLAILYAKRASVFVKLQKPNAAIRDCDRAIKINPDSAQTYK 184

Query:   186 FRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
             +RG+A+RLLG WEEAA DL  ACK+D+DE A   LKEV P
Sbjct:   185 WRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQP 224

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0260484 HIP "Hsc/Hsp70-interacting protein" [Drosophila melanogaster (taxid:7227)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 98/231 (42%), Positives = 136/231 (58%)

Query:     9 INKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPP------------PSKAQSDAX 56
             + KL+ F+    +NP    +P+L+F KDFVE +GGT+PP            P    + A 
Sbjct:    10 LKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGGTVPPGQFNGGSAGGKCPFGGVAGAK 69

Query:    57 XXXXXXXXXXXXXXXXXXX-XXXXXLDNTGVISXXXXXXXXXXVATDIEVSEEDIDKSNE 115
                                      LD  GVI             +  + +EE++++++E
Sbjct:    70 ANEPANAPEDSEDEKSLSDPESDVELDMEGVIEADSDPAQPMGNYSK-KATEEEVEQASE 128

Query:   116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
              + +A  AY   KF++A+  Y++AI+L+P +AL +AKRGQ++L+L KPNACIRDC VAL+
Sbjct:   129 LRAQAASAYGQQKFDEAIALYTKAIELSPGNALFHAKRGQAFLKLKKPNACIRDCDVALE 188

Query:   176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
             +N D AA YKFRGRA RLLG +E AA DLR ACK+DFDE+ DEWLKEVTPN
Sbjct:   189 LNSDLAAGYKFRGRARRLLGDFELAAHDLRQACKLDFDEETDEWLKEVTPN 239

GO:0005829 "cytosol" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISS

GO:0043234 "protein complex" evidence=ISS

FB|FBgn0029676 HIP-R "Hsc/Hsp70-interacting protein related" [Drosophila melanogaster (taxid:7227)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 98/231 (42%), Positives = 136/231 (58%)

Query:     9 INKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPP------------PSKAQSDAX 56
             + KL+ F+    +NP    +P+L+F KDFVE +GGT+PP            P    + A 
Sbjct:    10 LKKLKYFIDFALENPTFLNMPQLQFVKDFVEKFGGTVPPGQFNGGSAGGKCPFGGVAGAK 69

Query:    57 XXXXXXXXXXXXXXXXXXX-XXXXXLDNTGVISXXXXXXXXXXVATDIEVSEEDIDKSNE 115
                                      LD  GVI             +  + +EE++++++E
Sbjct:    70 ANEPANAPEDSEDEKSLSDPESDVELDMEGVIEADSDPAQPMGNYSK-KATEEEVEQASE 128

Query:   116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
              + +A  AY   KF++A+  Y++AI+L+P +AL +AKRGQ++L+L KPNACIRDC VAL+
Sbjct:   129 LRAQAASAYGQQKFDEAIALYTKAIELSPGNALFHAKRGQAFLKLKKPNACIRDCDVALE 188

Query:   176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
             +N D AA YKFRGRA RLLG +E AA DLR ACK+DFDE+ DEWLKEVTPN
Sbjct:   189 LNSDLAAGYKFRGRARRLLGDFELAAHDLRQACKLDFDEETDEWLKEVTPN 239

GO:0031072 "heat shock protein binding" evidence=ISS

GO:0043234 "protein complex" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

MGI|MGI:1917606 St13 "suppression of tumorigenicity 13" [Mus musculus (taxid:10090)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 91/226 (40%), Positives = 138/226 (61%)

Query:     4 LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPS-KAQSDAXXXXXXX 62
             + P  +++L+ F+   +++P++ +  E++F +++VES GG +PP + KA+S+        
Sbjct:     1 MDPRKVSELRAFVKMCRQDPSVLHTEEMRFLREWVESMGGKVPPATHKAKSEENTKEEKR 60

Query:    63 XXXXXXXXXXXXXXXXXX---LDNTGVISXXXXXXXXXXVATDIEVSEEDIDKSNEKKRE 119
                                  +DN GVI              + E++EE +D++NEKK  
Sbjct:    61 DKTTEENIKTEELSSEESDLEIDNEGVIEPDTDAPQEMG-DENAEITEEMMDEANEKKGA 119

Query:   120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
             AI A NDG+ + A++ +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A++INPD
Sbjct:   120 AIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPD 179

Query:   180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
             SA  YK+RG+A+RLLG WEEAA DL  ACK+D+DE A   L+EV P
Sbjct:   180 SAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLREVQP 225

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006457 "protein folding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0032564 "dATP binding" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0061084 "negative regulation of protein refolding" evidence=ISO

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISO

UNIPROTKB|A7E3S8 ST13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 92/227 (40%), Positives = 137/227 (60%)

Query:     4 LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPS---KAQSDAXXXXX 60
             + P  +++L+ F+   K++P++ +  E++F +++VES GG IPP +   K + +      
Sbjct:     1 MDPRKVSELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKIPPAAHKTKLEENTKEEKT 60

Query:    61 XXXXXXXXXXXXXXXXXXXXL--DNTGVISXXXXXXXXXXVATDIEVSEEDIDKSNEKKR 118
                                 L  DN GVI              ++E++EE +D++N+KK 
Sbjct:    61 DSKKTEENVKTDEPSSEESDLEIDNEGVIEPDTDAPQEMG-DENVEITEEMMDQANDKKV 119

Query:   119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
              AI A NDG+ + A++ +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A++INP
Sbjct:   120 AAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINP 179

Query:   179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
             DSA  YK+RG+A+RLLG WEEAA DL  ACK+D+DE A   LKEV P
Sbjct:   180 DSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQP 226

GO:0006950 "response to stress" evidence=IEA

UNIPROTKB|P50502 ST13 "Hsc70-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 92/227 (40%), Positives = 137/227 (60%)

Query:     4 LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPS-KAQSDAXXXX--- 59
             + P  +N+L+ F+   K++P++ +  E++F +++VES GG +PP + KA+S+        
Sbjct:     1 MDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKP 60

Query:    60 -XXXXXXXXXXXXXXXXXXXXXLDNTGVISXXXXXXXXXXVATDIEVSEEDIDKSNEKKR 118
                                   +D  GVI              + E++EE +D++N+KK 
Sbjct:    61 DSKKVEEDLKADEPSSEESDLEIDKEGVIEPDTDAPQEMG-DENAEITEEMMDQANDKKV 119

Query:   119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
              AI A NDG+ + A++ +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A++INP
Sbjct:   120 AAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINP 179

Query:   179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
             DSA  YK+RG+A+RLLG WEEAA DL  ACK+D+DE A   LKEV P
Sbjct:   180 DSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQP 226

GO:0005829 "cytosol" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032564 "dATP binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0061084 "negative regulation of protein refolding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|621312 St13 "suppression of tumorigenicity 13" [Rattus norvegicus (taxid:10116)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 90/226 (39%), Positives = 137/226 (60%)

Query:     4 LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPS-KAQSDAXXXXXXX 62
             + P  +++L+ F+   +++P++ +  E++F +++VES GG +PP + KA+S+        
Sbjct:     1 MDPRKVSELRAFVKMCRQDPSVLHTEEMRFLREWVESMGGKVPPATHKAKSEENTKEEKR 60

Query:    63 XXXXXXXXXX---XXXXXXXXLDNTGVISXXXXXXXXXXVATDIEVSEEDIDKSNEKKRE 119
                                  +DN GVI              + E++E  +D++NEKK  
Sbjct:    61 DKTTEDNIKTEEPSSEESDLEIDNEGVIEADTDAPQEMG-DENAEITEAMMDEANEKKGA 119

Query:   120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
             AI A NDG+ + A++ +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A++INPD
Sbjct:   120 AIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPD 179

Query:   180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
             SA  YK+RG+A+RLLG WEEAA DL  ACK+D+DE A   L+EV P
Sbjct:   180 SAQPYKWRGKAHRLLGHWEEAARDLALACKLDYDEDASAMLREVQP 225

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IDA;IPI

GO:0030544 "Hsp70 protein binding" evidence=IDA;IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0032564 "dATP binding" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0061084 "negative regulation of protein refolding" evidence=IDA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IDA

UNIPROTKB|Q8NFI4 ST13P5 "Putative protein FAM10A5" [Homo sapiens (taxid:9606)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 90/227 (39%), Positives = 137/227 (60%)

Query:     4 LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPS-KAQSDAXXXX--- 59
             + P  +N+L+ F+   K++P++ +  E++F +++VES GG +PP + KA+S+        
Sbjct:     1 MDPCKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKP 60

Query:    60 -XXXXXXXXXXXXXXXXXXXXXLDNTGVISXXXXXXXXXXVATDIEVSEEDIDKSNEKKR 118
                                   +D  GVI              ++E++EE +D++N+KK 
Sbjct:    61 DSKKVEEDLKADEPSTEESDLEIDKEGVIEPDTDAPQEMG-DENVEITEEMMDQANDKKV 119

Query:   119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
              AI   NDG+ + A++ +++AIKLNP  A+LYAKR   +++L KPNA I+DC  A++INP
Sbjct:   120 AAIEVLNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIQDCDRAIEINP 179

Query:   179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
             DSA  YK+RG+A+RLLG WEEAA DL  ACK+D+DE A   LKEV P
Sbjct:   180 DSAQPYKWRGKAHRLLGHWEEAAHDLAFACKLDYDEDASAMLKEVQP 226

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q8IZP2 ST13P4 "Putative protein FAM10A4" [Homo sapiens (taxid:9606)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 91/223 (40%), Positives = 132/223 (59%)

Query:     4 LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSDAXXXXXXXX 63
             + P  +N+L+ F+   KK+P+I +  E++F +++VES GGT    +K++ +         
Sbjct:     1 MDPRKVNELRAFVKMCKKDPSILHTQEMRFLREWVESMGGTATQKAKSEENTKEEKPDSK 60

Query:    64 XXXXXXXXX-XXXXXXXXLDNTGVISXXXXXXXXXXVATDIEVSEEDIDKSNEKKREAIH 122
                               +D  GVI              + E++EE +D++N+KK  AI 
Sbjct:    61 VEEDLKADEPSSEESDLEIDKEGVIEPDTDAPQEMG-DENAEITEEVMDQANDKKVAAIE 119

Query:   123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
             A NDG+ + A++ +++AIKLNP  A+LYAKR   +++L KPNA IRDC  A++INPDSA 
Sbjct:   120 ALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQ 179

Query:   183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
              YK RG+A+RLLG WEEAA DL  ACK D+DE A   LKEV P
Sbjct:   180 PYKRRGKAHRLLGHWEEAAHDLALACKFDYDEDASAMLKEVQP 222

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00011735 hip-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 91/228 (39%), Positives = 129/228 (56%)

Query:     7 DAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPP-PS-KAQSDAXXXXXXXXX 64
             D +  L+ F+G  + NPA+ + PE  FFKD++ S G T+PP P+ K +            
Sbjct:     2 DHVALLKQFVGMCQANPAVLHAPEFGFFKDYLVSLGATLPPKPADKPEGKCPMSEEPKKE 61

Query:    65 XXXXXXXXX------XXXXXXXLDNTGVISXXXXXXXXXXVATDIEVSEEDIDKSNEKKR 118
                                   +DN GVI            +   E +E++I+K++E++ 
Sbjct:    62 TPAAEATPEPEIPKPEEIPFPKIDNEGVIEPEEAVALPMGDSAK-EATEDEIEKASEERG 120

Query:   119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
             +A  A+++G F+ A+  ++ AI+ NP SA+L+AKR    L+L +P A I DC  A+ INP
Sbjct:   121 KAQEAFSNGDFDTALTHFTAAIEANPGSAMLHAKRANVLLKLKRPVAAIADCDKAISINP 180

Query:   179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
             DSA  YKFRGRA RLLGKW EA  DL  ACK+D+DE A+EWLKEV PN
Sbjct:   181 DSAQGYKFRGRANRLLGKWVEAKTDLATACKLDYDEAANEWLKEVEPN 228

GO:0055120 "striated muscle dense body" evidence=IDA

GO:0030017 "sarcomere" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZLF0	F10A1_CHICK	No assigned EC number	0.5111	0.9134	0.5844	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	231
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-18
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-13
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-11
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-08
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	9e-08
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-05
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	1e-05
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	8e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	5e-04
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	5e-04
pfam13371	73	pfam13371, TPR_9, Tetratricopeptide repeat	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 75.5 bits (186), Expect = 8e-18
 Identities = 31/95 (32%), Positives = 50/95 (52%)

Query: 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
                  Y  G +++A+  Y +A++L+P +A  Y     +Y +L K    + D   AL++
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           +PD+A AY   G AY  LGK+EEA      A ++D
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 61.6 bits (150), Expect = 5e-13
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL-SKPNACIRD 169
           D +   K      +  G +++A+ AY +A++L+P +A  Y     +YL+L       + D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 170 CSVALKINP 178
              AL+++P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 3/156 (1%)

Query: 57  KPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEK 116
           K E+          E ++EE          + EP +E P  D ++   +SEE+  K   K
Sbjct: 71  KKERRKRKQAEKETEGKTEEKKSTAPKNAPV-EPADELPEIDESSVANLSEEERKKYAAK 129

Query: 117 KREAIH-AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
            +E  + AY +  F  A+  YS+AI+  P   + Y+ R   +  L      + D + AL+
Sbjct: 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYYSNRAACHNALGDWEKVVEDTTAALE 188

Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           ++PD + A   R  AY  LGK+ +A +DL  +C ID
Sbjct: 189 LDPDYSKALNRRANAYDGLGKYADALLDLTASCIID 224

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           A   Y  GK+E+A+  Y +A++L+P +A  Y   G +Y +L K    +     AL+++P+
Sbjct: 41  AAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK-WEEAAVDL 204
           +A      G +  +L   +  I     AL+++PD+A AY     AY  LGK +EEA  DL
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 205 RNACKID 211
             A ++D
Sbjct: 62  EKALELD 68

Length = 69

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 28/87 (32%), Positives = 51/87 (58%)

Query: 114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
            + + +A  A+ D  F  AV+ Y++AI L+P++A LYA R Q+ ++L      + D + A
Sbjct: 3   KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKA 62

Query: 174 LKINPDSAAAYKFRGRAYRLLGKWEEA 200
           ++++P  A AY  +G A   L +++ A
Sbjct: 63  IELDPSLAKAYLRKGTACMKLEEYQTA 89

Length = 356

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 14/64 (21%), Positives = 25/64 (39%)

Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177
             A  A   G +++A+ A   A+   P +A      G++ L+  +          AL  +
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 178 PDSA 181
           PD  
Sbjct: 62  PDDP 65

Length = 65

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 1/119 (0%)

Query: 103 IEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-SALLYAKRGQSYLQLS 161
           +E+  E  + +             G++E+A+    +A+KLNP   A      G  YL+L 
Sbjct: 157 LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216

Query: 162 KPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWL 220
           K    +     AL+++PD+A A          LG++EEA   L  A ++D D       
Sbjct: 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLA 275

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 21/63 (33%), Positives = 31/63 (49%)

Query: 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208
                G  Y +L   +  +     AL+++PD+A AY     AY  LGK+EEA  D   A 
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 209 KID 211
           ++D
Sbjct: 62  ELD 64

Length = 100

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 22/74 (29%), Positives = 36/74 (48%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
            K ++A+    +A+ L+P+S LL     Q+ L+  KP   IR  +  L  +P+    +  
Sbjct: 354 NKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDL 413

Query: 187 RGRAYRLLGKWEEA 200
             +AY  LG   EA
Sbjct: 414 LAQAYAELGNRAEA 427

Length = 484

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 42.7 bits (100), Expect = 8e-05
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 12/160 (7%)

Query: 65  PEPS-APEEESEESDPELDN--TGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAI 121
           P+P  A  E+S E D E  N    +  +  E +            E+ +D     ++EAI
Sbjct: 273 PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAI 332

Query: 122 HAYN--------DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
            A N         GK  +A+   S++I+L+P     Y KR    L+L  P+    D   A
Sbjct: 333 -ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391

Query: 174 LKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
           LK+N +    Y  R + + + G++ +A  D + +  +D D
Sbjct: 392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 122 HAY-NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS--KPNACIRDCSVALKINP 178
            AY   G+ E A  +Y +A+ ++P S  LYAK G + L L+  + +         L  +P
Sbjct: 133 LAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAENRFDEARALIDEVLTADP 190

Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADE 218
            +  A   +G     LG  E A    R A  +  +  A  
Sbjct: 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVL 230

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 16/60 (26%), Positives = 23/60 (38%)

Query: 152 KRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
              ++ L+    +  +     AL   P +A A    G A    G+  EAA  LR A   D
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Length = 65

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 21/105 (20%), Positives = 40/105 (38%)

Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177
             A + Y  G++++A+  +      +P ++  +         L +    I   ++A  ++
Sbjct: 22  ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81

Query: 178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKE 222
           PD    Y         LG+ E A   L  A +I  +      LKE
Sbjct: 82  PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKE 126

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 13/51 (25%), Positives = 19/51 (37%)

Query: 155 QSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLR 205
             YL+       +      L + PD     + RG  Y  LG ++ A  DL 
Sbjct: 3   AIYLREEDFERALAVVERLLLLAPDDPYERRDRGLLYAQLGCFQAALADLE 53

Length = 73

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 23/89 (25%), Positives = 42/89 (47%)

Query: 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184
             G+ ++A+   S A+ L+P      +  G++YL L          + A +++P++AAA 
Sbjct: 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAAR 400

Query: 185 KFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
              G +    G   EA  DL  A ++D +
Sbjct: 401 TQLGISKLSQGDPSEAIADLETAAQLDPE 429

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 34.0 bits (79), Expect = 0.004
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           A A    G AY  LG ++EA      A ++D
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELD 31

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
KOG1308|consensus	377		100.0
KOG0553|consensus	304		99.85
PRK15359	144	type III secretion system chaperone protein SscB;	99.75
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.71
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.69
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.68
KOG0548|consensus	539		99.67
PRK11189	296	lipoprotein NlpI; Provisional	99.63
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.61
KOG0543|consensus	397		99.61
KOG1125|consensus	579		99.61
PRK10803	263	tol-pal system protein YbgF; Provisional	99.58
KOG4234|consensus	271		99.55
KOG1126|consensus	638		99.52
KOG0550|consensus	486		99.51
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.51
KOG1155|consensus	559		99.51
KOG4626|consensus	966		99.5
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.49
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.49
KOG0548|consensus	539		99.49
KOG4648|consensus	536		99.48
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.48
KOG0547|consensus	606		99.48
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.47
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.47
KOG4626|consensus	966		99.46
KOG0547|consensus	606		99.45
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.45
PRK15331	165	chaperone protein SicA; Provisional	99.44
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.43
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.41
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.4
KOG1155|consensus	559		99.4
PRK12370	553	invasion protein regulator; Provisional	99.4
PRK12370	553	invasion protein regulator; Provisional	99.38
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.38
KOG0624|consensus	504		99.36
PRK15359	144	type III secretion system chaperone protein SscB;	99.36
PRK11189	296	lipoprotein NlpI; Provisional	99.36
KOG1126|consensus	638		99.35
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.33
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.33
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.33
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.32
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.32
PLN02789	320	farnesyltranstransferase	99.31
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.3
KOG4642|consensus	284		99.3
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.3
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.29
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.28
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.28
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.27
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.27
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.25
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.24
KOG4555|consensus	175		99.24
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.23
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.22
PF13512	142	TPR_18: Tetratricopeptide repeat	99.21
KOG0376|consensus	476		99.21
KOG0551|consensus	390		99.19
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.19
KOG1173|consensus	611		99.19
PLN02789	320	farnesyltranstransferase	99.19
KOG0545|consensus	329		99.18
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.18
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.16
KOG2076|consensus	895		99.14
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.14
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.13
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.13
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.13
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.13
PF13371	73	TPR_9: Tetratricopeptide repeat	99.12
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.12
KOG0553|consensus	304		99.11
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.11
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.1
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.09
PF12688	120	TPR_5: Tetratrico peptide repeat	99.09
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.07
PF13371	73	TPR_9: Tetratricopeptide repeat	99.07
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.06
KOG4162|consensus	799		99.06
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.06
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.05
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.03
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.0
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.99
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.98
PRK11906	458	transcriptional regulator; Provisional	98.97
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.96
KOG2076|consensus	895		98.96
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.95
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.95
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.95
KOG3060|consensus	289		98.94
KOG3060|consensus	289		98.94
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.92
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.91
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.91
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.9
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.9
KOG1128|consensus	777		98.89
KOG1125|consensus	579		98.89
KOG0624|consensus	504		98.89
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.87
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.87
PRK14574	822	hmsH outer membrane protein; Provisional	98.85
KOG0543|consensus	397		98.84
KOG2002|consensus	1018		98.81
KOG0550|consensus	486		98.81
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.79
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.79
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.78
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.78
KOG2003|consensus	840		98.74
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.74
KOG1129|consensus	478		98.73
PRK14574	822	hmsH outer membrane protein; Provisional	98.73
KOG1840|consensus	508		98.7
KOG1156|consensus	700		98.69
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.69
KOG1173|consensus	611		98.67
KOG1840|consensus	508		98.66
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.65
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.65
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.64
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.64
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.62
KOG2002|consensus	1018		98.59
KOG1129|consensus	478		98.59
KOG4162|consensus	799		98.57
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.57
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.55
KOG1128|consensus	777		98.53
KOG2003|consensus	840		98.52
KOG1156|consensus	700		98.52
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.51
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.5
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.48
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.48
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.47
PF13431	34	TPR_17: Tetratricopeptide repeat	98.47
PF13428	44	TPR_14: Tetratricopeptide repeat	98.43
KOG1174|consensus	564		98.41
KOG1127|consensus	1238		98.41
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.41
KOG1174|consensus	564		98.4
PF13431	34	TPR_17: Tetratricopeptide repeat	98.39
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.38
KOG3785|consensus	557		98.38
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.37
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.35
PRK11906	458	transcriptional regulator; Provisional	98.34
PRK10803	263	tol-pal system protein YbgF; Provisional	98.34
KOG1127|consensus	1238		98.33
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.31
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.3
KOG4234|consensus	271		98.3
PF12688	120	TPR_5: Tetratrico peptide repeat	98.29
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.29
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.26
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.26
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.25
PF13428	44	TPR_14: Tetratricopeptide repeat	98.25
PRK15331	165	chaperone protein SicA; Provisional	98.24
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.21
KOG0495|consensus	913		98.21
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.19
KOG1310|consensus	758		98.18
KOG0495|consensus	913		98.16
PF13512	142	TPR_18: Tetratricopeptide repeat	98.12
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.11
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.07
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.04
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.03
KOG4555|consensus	175		98.03
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.96
KOG3785|consensus	557		97.95
PRK10941	269	hypothetical protein; Provisional	97.93
KOG2376|consensus	652		97.89
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.86
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.85
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.84
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.83
KOG2053|consensus	932		97.82
KOG4648|consensus	536		97.8
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.78
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.76
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.76
KOG2796|consensus	366		97.75
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.75
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.74
KOG1130|consensus	639		97.73
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.71
KOG1915|consensus	677		97.66
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.64
KOG1130|consensus	639		97.64
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.63
KOG2376|consensus	652		97.6
PRK10941	269	hypothetical protein; Provisional	97.6
KOG4340|consensus	459		97.59
KOG4642|consensus	284		97.57
KOG3081|consensus	299		97.56
PLN03218	1060	maturation of RBCL 1; Provisional	97.52
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.46
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.46
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.46
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.45
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.45
KOG2471|consensus	696		97.42
KOG3824|consensus	472		97.42
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.41
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.4
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.39
PLN03218	1060	maturation of RBCL 1; Provisional	97.35
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.35
PLN03077	857	Protein ECB2; Provisional	97.3
KOG1586|consensus	288		97.29
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.28
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.28
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.28
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.27
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.27
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.26
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.26
KOG0551|consensus	390		97.25
KOG0376|consensus	476		97.21
PRK04841	903	transcriptional regulator MalT; Provisional	97.19
PRK04841	903	transcriptional regulator MalT; Provisional	97.19
KOG4507|consensus	886		97.16
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.15
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.14
KOG1585|consensus	308		97.13
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.11
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.11
KOG0545|consensus	329		97.08
KOG2610|consensus	491		97.08
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.07
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.07
KOG4340|consensus	459		97.02
KOG2610|consensus	491		97.0
KOG2471|consensus	696		96.98
KOG2396|consensus	568		96.97
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.97
KOG3081|consensus	299		96.93
KOG1941|consensus	518		96.88
KOG2053|consensus	932		96.85
KOG0546|consensus	372		96.77
KOG1915|consensus	677		96.76
PLN03077	857	Protein ECB2; Provisional	96.75
COG2912	269	Uncharacterized conserved protein [Function unknow	96.74
KOG1586|consensus	288		96.74
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.71
KOG2796|consensus	366		96.7
KOG4814|consensus	872		96.53
KOG3824|consensus	472		96.5
KOG1308|consensus	377		96.48
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.47
KOG3364|consensus	149		96.45
KOG1941|consensus	518		96.43
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.42
KOG4151|consensus	748		96.41
COG2912	269	Uncharacterized conserved protein [Function unknow	96.4
KOG3364|consensus	149		96.33
KOG1070|consensus	1710		96.23
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.23
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.23
KOG1585|consensus	308		96.22
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.2
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.17
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.07
KOG0530|consensus	318		96.05
KOG1070|consensus	1710		96.01
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.91
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.9
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.89
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.77
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.71
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	95.67
COG3947	361	Response regulator containing CheY-like receiver a	95.6
KOG2396|consensus	568		95.56
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.56
KOG4507|consensus	886		95.55
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.3
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.22
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.15
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.09
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.09
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.94
KOG0529|consensus	421		94.93
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.89
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.85
KOG2047|consensus	835		94.67
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.59
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	94.59
KOG0530|consensus	318		94.54
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.53
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.36
KOG3617|consensus	1416		94.36
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.24
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.1
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.07
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.06
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.92
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.89
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	93.84
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.71
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	93.66
KOG0529|consensus	421		93.66
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	93.55
KOG4814|consensus	872		93.5
PHA02537	230	M terminase endonuclease subunit; Provisional	93.37
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	93.37
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	93.36
KOG2300|consensus	629		93.24
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.22
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.22
KOG1258|consensus	577		93.12
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.03
KOG1914|consensus	656		93.02
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	93.02
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.98
KOG1550|consensus	552		92.89
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.8
KOG1550|consensus	552		92.59
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.49
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.13
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.06
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	92.05
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	91.97
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.74
KOG2581|consensus	493		91.66
KOG0546|consensus	372		91.62
KOG1839|consensus	1236		91.49
KOG1310|consensus	758		90.97
KOG0686|consensus	466		90.91
KOG2047|consensus	835		90.69
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	90.42
KOG3807|consensus	556		90.36
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	89.94
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.72
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	89.69
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	89.66
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	89.52
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.44
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	89.27
KOG1839|consensus	1236		89.25
KOG1914|consensus	656		89.19
KOG2300|consensus	629		88.92
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	88.72
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.68
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.46
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.45
COG4941	415	Predicted RNA polymerase sigma factor containing a	88.21
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	88.2
COG3947	361	Response regulator containing CheY-like receiver a	87.94
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	87.71
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	87.54
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	87.5
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	87.48
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.3
PF12162	23	STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPr	87.29
KOG3617|consensus	1416		86.95
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.83
PF04212	69	MIT: MIT (microtubule interacting and transport) d	86.11
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	85.96
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	85.28
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.18
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	84.41
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	83.91
KOG1258|consensus	577		83.75
PF07939	64	DUF1685: Protein of unknown function (DUF1685); In	83.64
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	83.46
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	83.34
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	82.74
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.75
KOG2041|consensus	1189		81.68
KOG2758|consensus	432		81.41
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	81.4
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	81.4
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	81.0
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	80.74
KOG2422|consensus	665		80.7
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	80.3

>KOG1308|consensus

Probab=100.00  E-value=1.5e-32  Score=222.77  Aligned_cols=227  Identities=44%  Similarity=0.731  Sum_probs=207.3

Q ss_pred             CCHHHHHHHHHHHHHHhhCCCCCChhhhhhHHHHHHHcCCCCCCCCCCCCCC--CCCCCC---CCCCCCCCCCCCCCCCc
Q psy13481          4 LTPDAINKLQLFLGAVKKNPAIFYLPELKFFKDFVESYGGTIPPPSKAQSDA--PKPEKP---FTTPEPSAPEEESEESD   78 (231)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~g~~~p~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~e~~   78 (231)
                      |+..+|..|+.||.+|+.+|..+|.+++.|+|+|..++|+++||.....+..  .....+   ..+++..++++.+++++
T Consensus         1 ~~~~~ll~l~~F~~~~k~~~~~l~~~~~~flr~~~~s~g~~vpp~~~k~~~~e~~k~e~~~~~~~ee~~~~~e~s~~~~~   80 (377)
T KOG1308|consen    1 MSSPKLLILCAFVKMCKQDPSFLHTTEMIFLREWVESAGAKVPPAGQKAKSEENTKAEASISKSVEESLKAPEVSSPESD   80 (377)
T ss_pred             CCchhHHHhhhHHHHhccCchhhcccchhHHHHHHHhccCcCCCCCCcCcccccccccCCcccccccccccCCCCCCCcc
Confidence            4667899999999999999999999999999999999999999985444432  111111   22234556677788999


Q ss_pred             hhhccCCCCCCCCCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy13481         79 PELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYL  158 (231)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~  158 (231)
                      .+++..|+| +++.+.++.|++.+.+++.+..+.+...+..+..++..|.+++||++|+.+|.++|.++.+|..+|.+++
T Consensus        81 ~~~d~egvi-epd~d~pq~MGds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l  159 (377)
T KOG1308|consen   81 LEIDGEGVI-EPDTDAPQEMGDSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFL  159 (377)
T ss_pred             hhccCCCcc-ccCCCcchhhchhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceee
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhhccC
Q psy13481        159 QLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNLK  231 (231)
Q Consensus       159 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~k~~  231 (231)
                      ++++...||++|..++.++|+....|..+|.+.+.+|+|++|.++|+.+++++.+..+.+|+++|++++++|+
T Consensus       160 kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~  232 (377)
T KOG1308|consen  160 KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIE  232 (377)
T ss_pred             eccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999985

>KOG0553|consensus

Probab=99.85  E-value=1.6e-20  Score=150.90  Aligned_cols=119  Identities=33%  Similarity=0.536  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      ++...+..++..|+.+++.++|.+|+..|++||+++|+++.+|.+||.+|.++|.|..|+++|+.||.++|.+.++|..+
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN  226 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~  226 (231)
                      |.+|..+|++++|+..|++++.++|+++ .+.-|+....+
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~  195 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK  195 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999977 44444443333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.75  E-value=4.1e-17  Score=121.91  Aligned_cols=110  Identities=15%  Similarity=0.172  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy13481        116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG  195 (231)
Q Consensus       116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g  195 (231)
                      ++.+|..+...|++++|+..|++++.++|++..+|+++|.++..+|++.+|+..|++++.++|.++.+++++|.++..+|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481        196 KWEEAAVDLRNACKIDFDEQ-ADEWLKEVTP  225 (231)
Q Consensus       196 ~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~  225 (231)
                      ++++|+..|++++++.|++. .......+..
T Consensus       107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            99999999999999999875 4444444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.71  E-value=3.2e-16  Score=133.65  Aligned_cols=115  Identities=27%  Similarity=0.435  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL  193 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~  193 (231)
                      ..+...|..++..|+|.+|+.+|+++|+++|+++.+|+++|.+|..+|+|.+|+.++++++.++|.++.+|+.+|.+|..
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481        194 LGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKL  228 (231)
Q Consensus       194 ~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~  228 (231)
                      +|+|++|+..|+++++++|++. +..|+..+...+.
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999855 8888888877764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.69  E-value=1.3e-15  Score=113.16  Aligned_cols=103  Identities=16%  Similarity=0.043  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      .+....++..|..++..|++++|...|+-+..++|.+...|+++|.|+..+|+|.+||..|.+++.++|+++.+++++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            44578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      |+..+|+.+.|.+.|+.++...-
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999873

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.68  E-value=1.2e-15  Score=112.35  Aligned_cols=119  Identities=17%  Similarity=0.224  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      .++.+....+.+|..++..|++++|+..|++++..+|++..+|+++|.++..+|++++|+..+++++.++|.++..++.+
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l   91 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA   91 (135)
T ss_pred             CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            34555678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCHHH-HHHHHhhchh
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFDEQA-DEWLKEVTPN  226 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~l~~~~~~  226 (231)
                      |.++...|+++.|+..|+++++++|++.. ..+.+++...
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  131 (135)
T TIGR02552        92 AECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM  131 (135)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            99999999999999999999999998763 4455544443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0548|consensus

Probab=99.67  E-value=1e-15  Score=131.21  Aligned_cols=117  Identities=26%  Similarity=0.484  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ++.+...+..|+.+|+.|+|..|+.+|+++|..+|+++.+|.|||.||.+++.+..|+.+++++++++|.+..+|..-|.
T Consensus       355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~  434 (539)
T KOG0548|consen  355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA  434 (539)
T ss_pred             hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            34466777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN  226 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~  226 (231)
                      +++.+.+|+.|++.|+.++.++|++. +..++++|.+.
T Consensus       435 al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  435 ALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            99999999999999999999999854 88888888763

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.63  E-value=1.5e-14  Score=120.62  Aligned_cols=105  Identities=24%  Similarity=0.227  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      ..+..++.+|..+...|++.+|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+|+++|.+
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  141 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA  141 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +...|++++|+..|+++++++|++.
T Consensus       142 l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999875

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.61  E-value=1.7e-14  Score=113.39  Aligned_cols=115  Identities=13%  Similarity=0.123  Sum_probs=104.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHhhCCCCHH
Q psy13481        106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSY-LQLSK--PNACIRDCSVALKINPDSAA  182 (231)
Q Consensus       106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~Ai~~~~~al~~~p~~~~  182 (231)
                      ...++++...|..+|..+...|++++|+..|+++++++|+++.++..+|.++ ...|+  +.+|+..+++++.++|+++.
T Consensus        66 L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~  145 (198)
T PRK10370         66 IRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT  145 (198)
T ss_pred             HHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh
Confidence            3456677899999999999999999999999999999999999999999985 77787  59999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHH
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWL  220 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l  220 (231)
                      +++++|.+++..|+|++|+..|+++++++|.+. ...++
T Consensus       146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        146 ALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            999999999999999999999999999998633 33344

>KOG0543|consensus

Probab=99.61  E-value=1.9e-14  Score=120.35  Aligned_cols=122  Identities=23%  Similarity=0.367  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---------------ALLYAKRGQSYLQLSKPNACIRDCSV  172 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~Ai~~~~~  172 (231)
                      +....+...+..|+.+++.|+|..|+..|++|+..-.+.               ..++.|++.|+.++++|..|+..|++
T Consensus       203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k  282 (397)
T KOG0543|consen  203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK  282 (397)
T ss_pred             HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence            567778899999999999999999999999999874321               45889999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481        173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLN  229 (231)
Q Consensus       173 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k  229 (231)
                      +|.++|+|.+++|.+|.++..+|+|+.|+.+|+++++++|+|. +...+..+.+++++
T Consensus       283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999865 66667777666553

>KOG1125|consensus

Probab=99.61  E-value=2.7e-15  Score=129.63  Aligned_cols=113  Identities=19%  Similarity=0.285  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ++.....+|..++..|+|++|+++|+.||..+|++...|+++|..+..-.+..+||..|++|+++.|...+++|++|++|
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~  508 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC  508 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC-----------HHHHHHHHhhc
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFD-----------EQADEWLKEVT  224 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~-----------~~~~~~l~~~~  224 (231)
                      ..+|.|++|+++|-.||.+.+.           +.++..|+-+.
T Consensus       509 mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~al  552 (579)
T KOG1125|consen  509 MNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLAL  552 (579)
T ss_pred             hhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHH
Confidence            9999999999999999999765           34667666443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.58  E-value=5.5e-13  Score=108.83  Aligned_cols=106  Identities=20%  Similarity=0.121  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHH
Q psy13481        113 SNEKKREAIHA-YNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYK  185 (231)
Q Consensus       113 a~~~~~~a~~~-~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~  185 (231)
                      ....+..|..+ +..|+|++|+..|+..+..+|++   +.+++.+|.+|+..|+|.+|+..|.+++..+|++   +.+++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            35567777776 66799999999999999999998   5899999999999999999999999999999885   67999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHH
Q psy13481        186 FRGRAYRLLGKWEEAAVDLRNACKIDFDEQADE  218 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  218 (231)
                      .+|.++..+|+++.|+..|+++++.+|+.....
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            999999999999999999999999999876443

>KOG4234|consensus

Probab=99.55  E-value=2.3e-13  Score=103.98  Aligned_cols=116  Identities=32%  Similarity=0.563  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      ...+..++..|+.+|.+|+|.+|...|..||.+.|..     ..+|.|+|.++++++.+..||.+|.++|+++|.+-+++
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            4567889999999999999999999999999999975     56889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCH-HHHHHHHhhch
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDE-QADEWLKEVTP  225 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~l~~~~~  225 (231)
                      ..++.+|..+..|++|+.+|.+.+.++|.. .+.+...++-+
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~  213 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPP  213 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence            999999999999999999999999999974 35555544443

>KOG1126|consensus

Probab=99.52  E-value=1e-14  Score=127.82  Aligned_cols=126  Identities=16%  Similarity=0.184  Sum_probs=88.6

Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481        102 DIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA  181 (231)
Q Consensus       102 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~  181 (231)
                      .+.++..++.....|...|+.+-.+++++.||.+|++|+.++|+++-+|..+|.=+.....|+.|..+|++||..+|+|.
T Consensus       410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY  489 (638)
T KOG1126|consen  410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY  489 (638)
T ss_pred             HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence            33555566667777888888888888888888888888888777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~  227 (231)
                      .+||.+|.+|.++++++.|...|++|+.++|.+. ..-.+..++..+
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~  536 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL  536 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh
Confidence            7777777777777777777777777777777654 333444444333

>KOG0550|consensus

Probab=99.51  E-value=9.8e-14  Score=115.96  Aligned_cols=122  Identities=30%  Similarity=0.430  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      .+.....+...|+.++++|+|..|.+.|+.+|.++|++    +.+|.+||.+..++|+..+||.+|+.++.+++...+++
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal  324 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL  324 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence            46677889999999999999999999999999999986    67899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhhcc
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNL  230 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~k~  230 (231)
                      ..+|.|+..+++|++|+.+|++|.+...+-...+.+++.+..+++.
T Consensus       325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS  370 (486)
T KOG0550|consen  325 LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS  370 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998866788888887777754

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.51  E-value=1.1e-12  Score=93.91  Aligned_cols=104  Identities=22%  Similarity=0.227  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKF  186 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~  186 (231)
                      +..++..|..++..|++++|+..|.+++..+|++   ..+++.+|.++++.|+++.|+..|++++..+|++   ..+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3567899999999999999999999999999876   5789999999999999999999999999999886   678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCHHH
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQA  216 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  216 (231)
                      +|.++..+|++++|...|.+++...|++..
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            999999999999999999999999998763

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1155|consensus

Probab=99.51  E-value=1.7e-13  Score=116.02  Aligned_cols=114  Identities=23%  Similarity=0.212  Sum_probs=91.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy13481        117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK  196 (231)
Q Consensus       117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~  196 (231)
                      .-.|+-+..++++++|+.+|++|+++||....+|..+|.=|..+++...|+..|++|++++|.+.++|+.+|.+|..++.
T Consensus       334 CiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M  413 (559)
T KOG1155|consen  334 CIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM  413 (559)
T ss_pred             eeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc
Confidence            34555666677888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhcc
Q psy13481        197 WEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLNL  230 (231)
Q Consensus       197 ~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k~  230 (231)
                      ..=|+-+|++|+.+.|+|+ .+..+.+|++++.++
T Consensus       414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~  448 (559)
T KOG1155|consen  414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRL  448 (559)
T ss_pred             hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence            8888888888888888655 777888888777653

>KOG4626|consensus

Probab=99.50  E-value=1.2e-13  Score=120.60  Aligned_cols=105  Identities=26%  Similarity=0.326  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +.-+.++.++|.++-++|++++|+.+|+++|++.|+.++++.|+|..|-.+|+.+.|+.+|++||.++|..+.++.++|.
T Consensus       385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLas  464 (966)
T KOG4626|consen  385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLAS  464 (966)
T ss_pred             hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHH
Confidence            34456666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      +|...|+..+|+..|+.|+++.||.
T Consensus       465 i~kDsGni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  465 IYKDSGNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             HhhccCCcHHHHHHHHHHHccCCCC
Confidence            7777777777777777777777773

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.49  E-value=1.5e-13  Score=89.32  Aligned_cols=67  Identities=34%  Similarity=0.462  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q psy13481        146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG-KWEEAAVDLRNACKIDF  212 (231)
Q Consensus       146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p  212 (231)
                      ++..|..+|.+++..|+|++|+..|+++++++|+++.+|+++|.++..+| ++++|+.+|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45666666666666666666666666666666666666666666666666 56666666666666665

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.49  E-value=9.2e-13  Score=120.31  Aligned_cols=106  Identities=24%  Similarity=0.336  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +..+..+..+|..++..|++++|+..|++++.++|++..+|..+|.++..+|++++|+..|++++.++|+++.+|+.+|.
T Consensus       328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~  407 (615)
T TIGR00990       328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ  407 (615)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45567778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ++..+|++++|+.+|++++.++|++.
T Consensus       408 ~~~~~g~~~~A~~~~~kal~l~P~~~  433 (615)
T TIGR00990       408 LHFIKGEFAQAGKDYQKSIDLDPDFI  433 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCccCH
Confidence            88888888888888888888888753

>KOG0548|consensus

Probab=99.49  E-value=2.9e-13  Score=116.31  Aligned_cols=111  Identities=29%  Similarity=0.481  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..+...|+.++..|+|+.|+.+|+.+|.++|.+...|.||..+|..+|+|.+|+.+..++++++|+++++|..+|.++.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      .+|+|++|+..|...|+.+|++. ...-+.++
T Consensus        82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a  113 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQA  113 (539)
T ss_pred             hcccHHHHHHHHHHHhhcCCchHHHHHhHHHh
Confidence            99999999999999999999975 44444443

>KOG4648|consensus

Probab=99.48  E-value=1.9e-13  Score=112.20  Aligned_cols=106  Identities=25%  Similarity=0.378  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      -......+...|+.++++|.|++||++|.+++..+|.++..+.|||.+|+++++|..|..+|+.|+.++....++|..+|
T Consensus        93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~  172 (536)
T KOG4648|consen   93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRM  172 (536)
T ss_pred             HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence            34455668999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+-..+|...+|.++++.++++.|.+
T Consensus       173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  173 QARESLGNNMEAKKDCETVLALEPKN  198 (536)
T ss_pred             HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence            99999999999999999999999974

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.48  E-value=1.2e-12  Score=88.28  Aligned_cols=99  Identities=31%  Similarity=0.477  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481        115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL  194 (231)
Q Consensus       115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~  194 (231)
                      .++.+|..++..|++.+|+..++++++..|.+..+++.+|.++...+++.+|+..|++++.+.|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCC
Q psy13481        195 GKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       195 g~~~~A~~~~~~al~l~p~  213 (231)
                      |+++.|...+.+++..+|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999998874

>KOG0547|consensus

Probab=99.48  E-value=2.5e-13  Score=115.68  Aligned_cols=106  Identities=25%  Similarity=0.373  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ...+.++...|..++..|++-.|...|+.+|.++|.+...|..||.+|...++..+-..+|++|..+||.|+.+|+.+|.
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ  402 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ  402 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence            34467777788888888888888888888888888887778888888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +++.+++|++|+.+|++++.++|.+.
T Consensus       403 m~flL~q~e~A~aDF~Kai~L~pe~~  428 (606)
T KOG0547|consen  403 MRFLLQQYEEAIADFQKAISLDPENA  428 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcChhhh
Confidence            88888888888888888888888764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.47  E-value=3e-12  Score=98.43  Aligned_cols=116  Identities=22%  Similarity=0.383  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      ....+..++.+|..+...|++++|+.+|++++...|+.   ..++.++|.++..+|++++|+..+.+++.++|.+..++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            45567889999999999999999999999999987764   578999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCHH--HHHHHHhhc
Q psy13481        186 FRGRAYRLLGK--------------WEEAAVDLRNACKIDFDEQ--ADEWLKEVT  224 (231)
Q Consensus       186 ~lg~~~~~~g~--------------~~~A~~~~~~al~l~p~~~--~~~~l~~~~  224 (231)
                      .+|.++..+|+              +++|...+++++.++|++.  +..|++...
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  165 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTG  165 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcC
Confidence            99999999998              6889999999999999864  666665543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.47  E-value=1.1e-12  Score=119.69  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      ++.....+..+|..+...|++++|+..|+++++.+|+++.+|+++|.+++.+|++++|+.+|++++.++|++..+++++|
T Consensus       361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la  440 (615)
T TIGR00990       361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG  440 (615)
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence            34456678888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      .++..+|++++|+..|++++..+|++. +...+..+
T Consensus       441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~  476 (615)
T TIGR00990       441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGEL  476 (615)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            999999999999999999999988753 34344333

>KOG4626|consensus

Probab=99.46  E-value=3.1e-13  Score=118.04  Aligned_cols=104  Identities=23%  Similarity=0.279  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +....++.++|+.+-..|+..+|+.+|++++.++|+.+++.+|+|.++...|.++.|+..|.++++.+|..+.+..++|.
T Consensus       317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~  396 (966)
T KOG4626|consen  317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS  396 (966)
T ss_pred             CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH
Confidence            33445556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      +|..+|++++|+.+|+.++++.|.
T Consensus       397 i~kqqgnl~~Ai~~YkealrI~P~  420 (966)
T KOG4626|consen  397 IYKQQGNLDDAIMCYKEALRIKPT  420 (966)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCch
Confidence            666666666666666666666665

>KOG0547|consensus

Probab=99.45  E-value=9.3e-13  Score=112.24  Aligned_cols=101  Identities=31%  Similarity=0.553  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      +...-+..++.+|+.++.+|+|++||.+|++||.+.|+.+.+|.||+.||..+|++++.++++.++++++|+..++++.+
T Consensus       110 ~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RR  189 (606)
T KOG0547|consen  110 ERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRR  189 (606)
T ss_pred             HHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence            44566889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q psy13481        188 GRAYRLLGKWEEAAVDLRNAC  208 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al  208 (231)
                      +.++..+|++.+|+.+..-..
T Consensus       190 A~A~E~lg~~~eal~D~tv~c  210 (606)
T KOG0547|consen  190 ASAHEQLGKFDEALFDVTVLC  210 (606)
T ss_pred             HHHHHhhccHHHHHHhhhHHH
Confidence            999999999999999887443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.45  E-value=3.9e-13  Score=87.41  Aligned_cols=67  Identities=27%  Similarity=0.503  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCC
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-KPNACIRDCSVALKINP  178 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~Ai~~~~~al~~~p  178 (231)
                      ++..|..+|..++..|+|++|+..|+++++++|+++.+|+++|.++..+| ++.+|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            36789999999999999999999999999999999999999999999999 79999999999999998

...

>PRK15331 chaperone protein SicA; Provisional

Probab=99.44  E-value=4.7e-12  Score=94.64  Aligned_cols=118  Identities=13%  Similarity=0.002  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      +.....+..|..++..|++++|...|+-....+|.+...|..+|.|+..+++|++|+..|..+..++++++...+..|.|
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC  114 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC  114 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhh
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKL  228 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~  228 (231)
                      +..+|+...|..+|..++..--+....++.....+.++
T Consensus       115 ~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l~  152 (165)
T PRK15331        115 QLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALK  152 (165)
T ss_pred             HHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence            99999999999999999994333445554444444443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.43  E-value=3.4e-12  Score=99.61  Aligned_cols=100  Identities=19%  Similarity=0.242  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      ..+.....+|..++..|++..|...+++||+.+|++..+|..+|.+|.+.|..+.|-+.|++|+.++|++..+++|.|..
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            34567778888999999999999999999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhc
Q psy13481        191 YRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l  210 (231)
                      ++.+|++++|...|++|+..
T Consensus       113 LC~qg~~~eA~q~F~~Al~~  132 (250)
T COG3063         113 LCAQGRPEEAMQQFERALAD  132 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhC
Confidence            88888888888888887753

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.41  E-value=2e-11  Score=93.43  Aligned_cols=114  Identities=20%  Similarity=0.237  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ...+..++..|..+...|++++|+..|++++.+.|+.   +.+|+++|.++...|++++|+..|++++.++|.+...+.+
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            3457888999999999999999999999999997763   4689999999999999999999999999999999999999


Q ss_pred             HHHHHH-------HcCCHH-------HHHHHHHHHHhcCCCH--HHHHHHHhh
Q psy13481        187 RGRAYR-------LLGKWE-------EAAVDLRNACKIDFDE--QADEWLKEV  223 (231)
Q Consensus       187 lg~~~~-------~~g~~~-------~A~~~~~~al~l~p~~--~~~~~l~~~  223 (231)
                      +|.++.       .+|+++       +|+..|++++..+|++  ....|+..+
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~  164 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKIT  164 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHh
Confidence            999999       777766       6667777788889863  355555443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.40  E-value=1.1e-12  Score=88.82  Aligned_cols=82  Identities=28%  Similarity=0.461  Sum_probs=74.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy13481        125 NDGKFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAV  202 (231)
Q Consensus       125 ~~~~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  202 (231)
                      ..|+|+.|+..|+++++..|.  +..+++.+|.|+++.|+|.+|+..+++ +..++.+....+.+|.|+..+|+|++|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  577888899999999999999999999 88999999999999999999999999999


Q ss_pred             HHHHH
Q psy13481        203 DLRNA  207 (231)
Q Consensus       203 ~~~~a  207 (231)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>KOG1155|consensus

Probab=99.40  E-value=5.3e-12  Score=107.08  Aligned_cols=121  Identities=17%  Similarity=0.151  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      -++....+|...|..++..++...|++.|++|++++|.+..+|+.+|++|--++-+--|+-.|++|+...|.+...|.-+
T Consensus       359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL  438 (559)
T KOG1155|consen  359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL  438 (559)
T ss_pred             cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH
Confidence            34556778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCH-HHHHHHHhhchhhh
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFDE-QADEWLKEVTPNKL  228 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~~~  228 (231)
                      |.||..+++.++|+++|.+|+.....+ .+...+.++.++++
T Consensus       439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~  480 (559)
T KOG1155|consen  439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK  480 (559)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            999999999999999999999998753 35666666666554

>PRK12370 invasion protein regulator; Provisional

Probab=99.40  E-value=4.8e-12  Score=114.18  Aligned_cols=107  Identities=16%  Similarity=0.019  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q psy13481        109 DIDKSNEKKREAIHAYN---------DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD  179 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~---------~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~  179 (231)
                      +++.+..+..+|.++..         .+++.+|+..++++++++|+++.+|..+|.++...|++++|+..|++++.++|+
T Consensus       291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~  370 (553)
T PRK12370        291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI  370 (553)
T ss_pred             CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            34445566666655442         245788999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       180 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~  406 (553)
T PRK12370        371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA  406 (553)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence            999999999999999999999999999999998754

>PRK12370 invasion protein regulator; Provisional

Probab=99.38  E-value=8e-12  Score=112.74  Aligned_cols=117  Identities=14%  Similarity=0.001  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ..+++++..+..+|..+...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..+++++.++|.++.+++.
T Consensus       332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~  411 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence            34566678888999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CCHH-HHHHHHhh
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKID-FDEQ-ADEWLKEV  223 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~-p~~~-~~~~l~~~  223 (231)
                      ++.+++..|++++|+..+++++... |++. +...+..+
T Consensus       412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~  450 (553)
T PRK12370        412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF  450 (553)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence            8888888999999999999999875 5543 23334333

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.38  E-value=1.1e-11  Score=117.34  Aligned_cols=102  Identities=16%  Similarity=0.028  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+..+|.++.+.|++++|+..|++++.++|+++.+++++|.++...|++++|+..|++++.++|+++.+++++|.++.
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+|++++|+..|++++.++|+.
T Consensus       689 ~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        689 RLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999975

>KOG0624|consensus

Probab=99.36  E-value=4.6e-12  Score=104.09  Aligned_cols=106  Identities=23%  Similarity=0.319  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      .+.++.....+|..++.+|.+..|+..|..|++.+|++..++++||.+|+.+|+-..|+.++.++|++.|+...+...+|
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence            45668889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .++..+|+++.|..+|...+..+|.+
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~  139 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSN  139 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999999964

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.36  E-value=5.3e-12  Score=94.24  Aligned_cols=88  Identities=16%  Similarity=0.093  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ..++.....+..+|.++...|++++|+..|++++.++|+++.+|+++|.++..+|++++|+..|++++.++|+++..+.+
T Consensus        52 ~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~  131 (144)
T PRK15359         52 MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI  131 (144)
T ss_pred             HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            34455688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc
Q psy13481        187 RGRAYRLL  194 (231)
Q Consensus       187 lg~~~~~~  194 (231)
                      +|.+...+
T Consensus       132 ~~~~~~~l  139 (144)
T PRK15359        132 RQNAQIMV  139 (144)
T ss_pred             HHHHHHHH
Confidence            99987654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.36  E-value=2.6e-11  Score=101.21  Aligned_cols=73  Identities=18%  Similarity=0.261  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS  180 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~  180 (231)
                      .+++.+..++.+|..+...|++++|+..|+++++++|++..+|.++|.+++..|++++|+.+|++++.++|++
T Consensus        93 l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189         93 LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3456678999999999999999999999999999999999999999999999999999999999988888764

>KOG1126|consensus

Probab=99.35  E-value=7.2e-12  Score=110.15  Aligned_cols=105  Identities=17%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +..+.++..+|..+.....|+.|..+|+.||..+|.+..+|+.+|.+|.++++++.|..+|++|+++||.|....+.+|.
T Consensus       452 p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~  531 (638)
T KOG1126|consen  452 PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGR  531 (638)
T ss_pred             CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhH
Confidence            33455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ++..+|+.++|+..|.+|+.++|.+
T Consensus       532 ~~~~~k~~d~AL~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  532 IQHQLKRKDKALQLYEKAIHLDPKN  556 (638)
T ss_pred             HHHHhhhhhHHHHHHHHHHhcCCCC
Confidence            5555555555555555555555543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.33  E-value=8.1e-11  Score=92.89  Aligned_cols=106  Identities=22%  Similarity=0.236  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN--PDSAAAYKF  186 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--p~~~~~~~~  186 (231)
                      .+.....+..+|..+...|++++|+..|++++...|.+..++.++|.++...|++++|+..+++++...  +.....+..
T Consensus        61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  140 (234)
T TIGR02521        61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN  140 (234)
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence            344455666666666677777777777777777766666666677777777777777777777766643  344556666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      +|.++...|++++|...|.+++..+|++
T Consensus       141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~  168 (234)
T TIGR02521       141 AGLCALKAGDFDKAEKYLTRALQIDPQR  168 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            7777777777777777777777776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.33  E-value=8.5e-12  Score=80.07  Aligned_cols=64  Identities=22%  Similarity=0.425  Sum_probs=37.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481        118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA  181 (231)
Q Consensus       118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~  181 (231)
                      .+|..++..|+|++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|++++.++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3455566666666666666666666666666666666666666666666666666666666543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.33  E-value=4e-11  Score=96.45  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA---LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA---AYKF  186 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~  186 (231)
                      +..++..|..++..|+|++|+..|++++..+|+++   .+++.+|.+++..|++.+|+..|+++++.+|+++.   +++.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            67889999999999999999999999999999875   68899999999999999999999999999998876   7999


Q ss_pred             HHHHHHHc--------CCHHHHHHHHHHHHhcCCCHH
Q psy13481        187 RGRAYRLL--------GKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       187 lg~~~~~~--------g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +|.++...        |++++|+..|++++..+|++.
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence            99999987        899999999999999999864

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.32  E-value=3.6e-11  Score=110.11  Aligned_cols=116  Identities=8%  Similarity=-0.021  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ..-+..+.+++.+|.+....|++++|...+..++++.|++..++.++|.++.+++++++|+..+++++..+|+++.+++.
T Consensus        80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            34456688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHh
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKE  222 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~  222 (231)
                      +|.++..+|++++|+..|++++..+|++. +.-.+..
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~  196 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQ  196 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            99999999999999999999999888743 4433333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.32  E-value=5.1e-11  Score=94.66  Aligned_cols=112  Identities=20%  Similarity=0.221  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +.+...+..+|...+..|+|..|+..++++..+.|+++.+|..+|.+|-+.|+++.|...|.+++++.|.++.+..|+|.
T Consensus        97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm  176 (257)
T COG5010          97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGM  176 (257)
T ss_pred             cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence            33455666699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDE-QADEWLK  221 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~l~  221 (231)
                      .+...|+++.|...+..+...-+.+ .+.+.+.
T Consensus       177 s~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA  209 (257)
T COG5010         177 SLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA  209 (257)
T ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            9999999999999999998887743 3444443

>PLN02789 farnesyltranstransferase

Probab=99.31  E-value=6.1e-11  Score=99.59  Aligned_cols=121  Identities=15%  Similarity=0.111  Sum_probs=106.9

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhhCCCC
Q psy13481        104 EVSEEDIDKSNEKKREAIHAYNDG-KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP--NACIRDCSVALKINPDS  180 (231)
Q Consensus       104 ~~~~~~~~~a~~~~~~a~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~Ai~~~~~al~~~p~~  180 (231)
                      .+...+++...+|..++.++...| ++.+++..+++++..+|++..+|+.|+.++.++|++  .+++..++++++++|+|
T Consensus        62 ~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN  141 (320)
T PLN02789         62 DVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN  141 (320)
T ss_pred             HHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc
Confidence            334456778899999999999998 689999999999999999999999999999999974  78899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      ..+|..+|+++..+|+|++++.++.++++++|.+. ++.....+.
T Consensus       142 y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl  186 (320)
T PLN02789        142 YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI  186 (320)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence            99999999999999999999999999999999753 554444443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.30  E-value=6e-11  Score=93.20  Aligned_cols=90  Identities=19%  Similarity=0.234  Sum_probs=85.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q psy13481        126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY-RLLGK--WEEAAV  202 (231)
Q Consensus       126 ~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~  202 (231)
                      .++.++++..++++++.+|++..+|..+|.+|..+|+++.|+..|++++.++|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            577899999999999999999999999999999999999999999999999999999999999985 67787  599999


Q ss_pred             HHHHHHhcCCCHH
Q psy13481        203 DLRNACKIDFDEQ  215 (231)
Q Consensus       203 ~~~~al~l~p~~~  215 (231)
                      .++++++++|++.
T Consensus       132 ~l~~al~~dP~~~  144 (198)
T PRK10370        132 MIDKALALDANEV  144 (198)
T ss_pred             HHHHHHHhCCCCh
Confidence            9999999999864

>KOG4642|consensus

Probab=99.30  E-value=1.2e-11  Score=96.92  Aligned_cols=114  Identities=25%  Similarity=0.411  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      ..+..+...|+.++...+|..|+..|.++|.++|+.+.+|.+++.||+++++++.+..++.+++++.|+..++.+.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            34678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcC------CCHHHHHHHHhhc
Q psy13481        191 YRLLGKWEEAAVDLRNACKID------FDEQADEWLKEVT  224 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~------p~~~~~~~l~~~~  224 (231)
                      ......|.+|+..+++|..+.      +.+.+...|+.+.
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             HHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            999999999999999996652      3455555555543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.30  E-value=1.3e-10  Score=91.77  Aligned_cols=100  Identities=19%  Similarity=0.243  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLN--PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ..+...|..++..|++++|+..|.+++...  +.....+.++|.++...|++.+|+..+.+++..+|.+..++..+|.++
T Consensus       100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  179 (234)
T TIGR02521       100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY  179 (234)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence            344444555555555555555555555432  233444555555555555555555555555555555555555555555


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ...|++++|...+++++.+.|+
T Consensus       180 ~~~~~~~~A~~~~~~~~~~~~~  201 (234)
T TIGR02521       180 YLRGQYKDARAYLERYQQTYNQ  201 (234)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC
Confidence            5555555555555555555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.29  E-value=3.7e-11  Score=93.88  Aligned_cols=111  Identities=17%  Similarity=0.150  Sum_probs=102.8

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHH
Q psy13481        105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI--NPDSAA  182 (231)
Q Consensus       105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~--~p~~~~  182 (231)
                      ....++....+|..+|..+...|..+.|-+.|++|+.++|++.++++|.|..++..|+|++|...|++|+.-  .+..+.
T Consensus        61 AL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~  140 (250)
T COG3063          61 ALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSD  140 (250)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcch
Confidence            345677778999999999999999999999999999999999999999999999999999999999999974  356778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +|-|+|.|....|+.+.|.+.|++++.++|+..
T Consensus       141 t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         141 TLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             hhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence            999999999999999999999999999999853

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.28  E-value=1.5e-10  Score=92.97  Aligned_cols=106  Identities=23%  Similarity=0.218  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHH
Q psy13481        115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFRG  188 (231)
Q Consensus       115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~lg  188 (231)
                      .+|..|..++..|+|..|...|...|+..|++   +.++|++|.+++.+|+|..|...|..++.-.|.+   +.+++.+|
T Consensus       143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            38999999999999999999999999999987   7899999999999999999999999999999876   46899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHH
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQADEWL  220 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l  220 (231)
                      .|...+|+.++|+..|+++++.+|+.++...-
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            99999999999999999999999997654443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.28  E-value=2e-11  Score=78.36  Aligned_cols=65  Identities=25%  Similarity=0.330  Sum_probs=60.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       151 ~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +.+|..++..|+|++|+..|++++..+|.++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999863

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.27  E-value=3.2e-11  Score=99.73  Aligned_cols=115  Identities=20%  Similarity=0.173  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      .+...+...|..+.+.|++++|+..|+++++++|++..++..++.++...|++.++...+.......|.++..+..+|.+
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~  223 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA  223 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999888889999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTP  225 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~  225 (231)
                      +..+|++++|+..|+++++.+|+|. ....+..+..
T Consensus       224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~  259 (280)
T PF13429_consen  224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE  259 (280)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred             hccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999864 4444444443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.27  E-value=1.2e-10  Score=110.49  Aligned_cols=105  Identities=25%  Similarity=0.226  Sum_probs=92.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy13481        119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWE  198 (231)
Q Consensus       119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  198 (231)
                      .+......|++++|+..|+++++++|+ ..+|.++|.++.++|++++|+..|++++.++|+++.++.++|.++...|+++
T Consensus       582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e  660 (987)
T PRK09782        582 LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA  660 (987)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            344444559999999999999999996 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        199 EAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       199 ~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      +|+..|+++++++|++. +...+..+.
T Consensus       661 eAi~~l~~AL~l~P~~~~a~~nLA~al  687 (987)
T PRK09782        661 QSREMLERAHKGLPDDPALIRQLAYVN  687 (987)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999864 444443333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.25  E-value=1.3e-10  Score=106.79  Aligned_cols=105  Identities=14%  Similarity=0.251  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFED----AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~----Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      ++....+..+|..+...|++++    |+..|+++++++|++..++..+|.++...|++++|+..+++++.++|+++.++.
T Consensus       243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~  322 (656)
T PRK15174        243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA  322 (656)
T ss_pred             CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3345566667777777777775    677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        186 FRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+|.++...|++++|+..|++++..+|++
T Consensus       323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        323 MYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            77777777777777777777777777765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.24  E-value=1.1e-10  Score=107.20  Aligned_cols=108  Identities=13%  Similarity=0.069  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ..+++.+..+..+|..+...|++++|+..|++++.++|+++.++.++|.++...|++++|+..|++++..+|.+..++..
T Consensus       278 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~  357 (656)
T PRK15174        278 QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY  357 (656)
T ss_pred             hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            34466678899999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      +|.++...|++++|+..|+++++++|++
T Consensus       358 ~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        358 AAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            8999999999999999999999999974

>KOG4555|consensus

Probab=99.24  E-value=8.2e-10  Score=79.14  Aligned_cols=102  Identities=27%  Similarity=0.409  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----HHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA----AAYKFR  187 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~----~~~~~l  187 (231)
                      ....+-..|..+...|+.+.|++.|.++|.+.|..+.+|+|++.++.-.|+.++|+.++++++++...-.    .++..+
T Consensus        42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR  121 (175)
T KOG4555|consen   42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR  121 (175)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            3456677889999999999999999999999999999999999999999999999999999999975543    488999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      |.+|+.+|+-+.|..+|+.|-.+...
T Consensus       122 g~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  122 GLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHhCchHHHHHhHHHHHHhCCH
Confidence            99999999999999999999888754

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=2.1e-10  Score=93.23  Aligned_cols=108  Identities=15%  Similarity=0.099  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK---PNACIRDCSVALKINPDSAAA  183 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~Ai~~~~~al~~~p~~~~~  183 (231)
                      ..++.++..|..+|.+++..|++..|...|.+|+++.|+++..+..+|.+++...+   ..++...+++++.++|.|..+
T Consensus       150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira  229 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA  229 (287)
T ss_pred             HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence            45677899999999999999999999999999999999999999999999988774   679999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+.+|..++..|+|.+|...|+..+...|.+
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999999998864

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.22  E-value=2.3e-10  Score=104.88  Aligned_cols=109  Identities=12%  Similarity=-0.057  Sum_probs=103.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      .+-.|+...++...|.++.+.+++++|+..+++++..+|+++.+++.+|.++.++|+|++|+..|++++..+|++..++.
T Consensus       113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~  192 (694)
T PRK15179        113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV  192 (694)
T ss_pred             HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence            34567778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        186 FRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ++|.++..+|+.++|...|++++....+.
T Consensus       193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        193 GWAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999987653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.21  E-value=7e-10  Score=81.28  Aligned_cols=103  Identities=17%  Similarity=0.231  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA---AYKF  186 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~  186 (231)
                      +..++..|...++.|+|.+|++.|+.+....|..   ..+...+|.+|++.++|.+|+..+++-|+++|.|+.   +++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            5788999999999999999999999999998865   678899999999999999999999999999999875   8999


Q ss_pred             HHHHHHHcCC---------------HHHHHHHHHHHHhcCCCHH
Q psy13481        187 RGRAYRLLGK---------------WEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       187 lg~~~~~~g~---------------~~~A~~~~~~al~l~p~~~  215 (231)
                      +|.+++.+..               ...|...|++.+...|+.+
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            9999999987               8999999999999999876

>KOG0376|consensus

Probab=99.21  E-value=1.8e-11  Score=104.57  Aligned_cols=116  Identities=30%  Similarity=0.443  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..+...|+.++..++|+.|+..|.+||+++|+.+.++.+|+.++++.++|..|+.++.+||+++|...++|+.+|.++.
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKL  228 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~  228 (231)
                      .++.+.+|...|+....+.|++. +...+.+|..-..
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs  120 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVS  120 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999865 7777777765444

>KOG0551|consensus

Probab=99.19  E-value=1.8e-10  Score=94.23  Aligned_cols=103  Identities=27%  Similarity=0.447  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      .|..++..|+.+++.++|..|+..|.++|+..-.+    +.+|+|||.|.+.+|+|..|+.+|.+++.++|.|.++++.-
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            68899999999999999999999999999985443    67899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      +.|+..+.++.+|..+++..+.++-+.
T Consensus       160 Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  160 AKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            999999999888888888887777553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.19  E-value=2.6e-10  Score=83.72  Aligned_cols=91  Identities=12%  Similarity=0.091  Sum_probs=82.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        134 NAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       134 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      +.|++++..+|++..+.+.+|.+++..|++.+|+..+++++.++|.++.+++.+|.++..+|++.+|...|++++.++|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HH-HHHHHHhhc
Q psy13481        214 EQ-ADEWLKEVT  224 (231)
Q Consensus       214 ~~-~~~~l~~~~  224 (231)
                      +. ....+..+.
T Consensus        84 ~~~~~~~la~~~   95 (135)
T TIGR02552        84 DPRPYFHAAECL   95 (135)
T ss_pred             ChHHHHHHHHHH
Confidence            53 444444333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1173|consensus

Probab=99.19  E-value=1.3e-10  Score=100.78  Aligned_cols=116  Identities=21%  Similarity=0.260  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL----NPS---SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA  182 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~----~p~---~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~  182 (231)
                      |.+...+...|.+++..+.|.+|+.+|+.++..    .+.   -...+.|+|.++.++++|.+||..++++|.+.|.++.
T Consensus       411 P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~  490 (611)
T KOG1173|consen  411 PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAS  490 (611)
T ss_pred             CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchh
Confidence            444567778899999999999999999999943    222   2456899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTP  225 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~  225 (231)
                      ++..+|.+|..+|+++.|+.+|.+++.+.|++. +.+.++...+
T Consensus       491 ~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  491 THASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            999999999999999999999999999999985 6666665443

>PLN02789 farnesyltranstransferase

Probab=99.19  E-value=3.4e-10  Score=95.10  Aligned_cols=120  Identities=11%  Similarity=0.048  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKF--EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~--~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      ..++....+|..++.++...|+.  .+++.+++++++.+|.+..+|..+|-++..+|+|++++.+++++|+++|+|..+|
T Consensus       100 ~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW  179 (320)
T PLN02789        100 EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW  179 (320)
T ss_pred             HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence            44566677889899888888874  7889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHc---CCH----HHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481        185 KFRGRAYRLL---GKW----EEAAVDLRNACKIDFDEQ-ADEWLKEVTPN  226 (231)
Q Consensus       185 ~~lg~~~~~~---g~~----~~A~~~~~~al~l~p~~~-~~~~l~~~~~~  226 (231)
                      +.+|.+...+   |.+    ++++.+..+++.++|++. ++..++.+...
T Consensus       180 ~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        180 NQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             HHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence            9999998876   333    468888889999999865 77766666544

>KOG0545|consensus

Probab=99.18  E-value=6.6e-10  Score=87.66  Aligned_cols=119  Identities=22%  Similarity=0.294  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHcCChHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPS----------SALLYAKRGQSYLQLSKPNACIR  168 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~----------~~~~~~~la~~~~~~~~~~~Ai~  168 (231)
                      .+.......+.+.|+.++..|+|.+|...|..||..        .|.          ...++.|.+.|++..|+|-++++
T Consensus       172 deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevle  251 (329)
T KOG0545|consen  172 DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLE  251 (329)
T ss_pred             hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence            345666788999999999999999999999999864        333          35688899999999999999999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--HHHHHHHHhhch
Q psy13481        169 DCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD--EQADEWLKEVTP  225 (231)
Q Consensus       169 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~l~~~~~  225 (231)
                      ++..++...|.|.++|+.+|.++...-+..+|..+|.++++++|.  ....+.++-+..
T Consensus       252 h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~  310 (329)
T KOG0545|consen  252 HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLEN  310 (329)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999997  334444544443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.18  E-value=5.7e-10  Score=89.74  Aligned_cols=118  Identities=19%  Similarity=0.194  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CChHHHHHHHHHHHhhCC
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL---LYAKRGQSYLQL--------SKPNACIRDCSVALKINP  178 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~la~~~~~~--------~~~~~Ai~~~~~al~~~p  178 (231)
                      +.....++.+|..++..|++++|+..|+++++.+|++..   +++.+|.+++..        |++.+|+..|++++..+|
T Consensus        67 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  146 (235)
T TIGR03302        67 PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP  146 (235)
T ss_pred             hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence            334467899999999999999999999999999998765   799999999987        889999999999999999


Q ss_pred             CCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCH----HHHHHHHhhchhh
Q psy13481        179 DSAAAY-----------------KFRGRAYRLLGKWEEAAVDLRNACKIDFDE----QADEWLKEVTPNK  227 (231)
Q Consensus       179 ~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~l~~~~~~~  227 (231)
                      .+..++                 ..+|.+|...|++.+|+..|++++...|+.    .+...+..+...+
T Consensus       147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l  216 (235)
T TIGR03302       147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL  216 (235)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc
Confidence            986543                 367888999999999999999999998863    3444555544443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.16  E-value=1.3e-09  Score=93.77  Aligned_cols=100  Identities=18%  Similarity=0.108  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc
Q psy13481        116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-AAAYKFRGRAYRLL  194 (231)
Q Consensus       116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~-~~~~~~lg~~~~~~  194 (231)
                      +..+|..+...|++++|+..|+++++.+|++..++..+|.++.+.|++++|+..+++++..+|.+ ..++..++.+|...
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  262 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL  262 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence            44556666666666666666666666666666666666666666666666666666666666654 34555666666666


Q ss_pred             CCHHHHHHHHHHHHhcCCCHH
Q psy13481        195 GKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       195 g~~~~A~~~~~~al~l~p~~~  215 (231)
                      |++++|...+++++..+|+..
T Consensus       263 g~~~~A~~~l~~~~~~~p~~~  283 (389)
T PRK11788        263 GDEAEGLEFLRRALEEYPGAD  283 (389)
T ss_pred             CCHHHHHHHHHHHHHhCCCch
Confidence            666666666666666666543

>KOG2076|consensus

Probab=99.14  E-value=2.2e-09  Score=97.48  Aligned_cols=103  Identities=20%  Similarity=0.244  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      .+..+...|+.++..|++++|...+.++|+.+|.++.+|+.+|.+|..+|+..+|...+-.|-.++|.+...|..++...
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ..+|++..|.-+|.+|++.+|.+
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n  240 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSN  240 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999986

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.14  E-value=1.6e-09  Score=101.42  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      ..+..+..+|..+...|++.+|+..|+++++++|.++.++..+|.++...|++.+|+..+++++..+|+++. +..+|.+
T Consensus        47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~  125 (765)
T PRK10049         47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV  125 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence            346678899999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +...|++++|+..|+++++++|++.
T Consensus       126 l~~~g~~~~Al~~l~~al~~~P~~~  150 (765)
T PRK10049        126 YKRAGRHWDELRAMTQALPRAPQTQ  150 (765)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999864

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.13  E-value=9.9e-10  Score=102.89  Aligned_cols=115  Identities=19%  Similarity=0.205  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      .+++...+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|+ .+|+..+++++.+.|+++..+..+|
T Consensus       766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~  844 (899)
T TIGR02917       766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG  844 (899)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            344566777888888888888888888888888888888888888888888888 7788889998888888888888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      .++...|++++|+..|+++++++|.+. +...+..+.
T Consensus       845 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~  881 (899)
T TIGR02917       845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL  881 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            999999999999999999999988643 444444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.13  E-value=8.4e-10  Score=107.50  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL--------------LYAKRGQSYLQLSKPNACIRDCSVA  173 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~--------------~~~~la~~~~~~~~~~~Ai~~~~~a  173 (231)
                      ..+++...+..+|.+++..|++++|+.+|+++++.+|++..              ....+|.++...|++++|+..|+++
T Consensus       298 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A  377 (1157)
T PRK11447        298 ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA  377 (1157)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34555677888888888888888888888888888887642              1234577888888888888888888


Q ss_pred             HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        174 LKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       174 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +.++|.+..+++.+|.++...|++++|+..|+++++++|++.
T Consensus       378 l~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~  419 (1157)
T PRK11447        378 RQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT  419 (1157)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            888888899999999999999999999999999999999854

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.13  E-value=2.6e-10  Score=73.69  Aligned_cols=66  Identities=18%  Similarity=0.296  Sum_probs=46.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       124 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +..|+|++|+..|++++..+|++..+++.+|.+|++.|++++|...+++++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            456777777777777777777777777777777777777777777777777777776666555543

...

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.13  E-value=1.9e-09  Score=100.93  Aligned_cols=111  Identities=12%  Similarity=0.013  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+..+|..+...|++++|+..|++++...|.+..++..+|.++...|++.+|+..+++++.++|++..+++.+|.++.
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al  438 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL  438 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQADEWLKEV  223 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~  223 (231)
                      .+|+|++|...++++++.+|++.....+.+.
T Consensus       439 ~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~  469 (765)
T PRK10049        439 DLQEWRQMDVLTDDVVAREPQDPGVQRLARA  469 (765)
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999999999999999998755544443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.12  E-value=5.5e-10  Score=73.16  Aligned_cols=66  Identities=23%  Similarity=0.441  Sum_probs=40.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       121 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ..++..++|++|+.++++++.++|+++.+|..+|.+++.+|+|.+|+.+|+++++..|++..+...
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            345566666666666666666666666666666666666666666666666666666665554443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.12  E-value=2.2e-09  Score=100.50  Aligned_cols=107  Identities=19%  Similarity=0.183  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      .+..+..+...|..++..|++++|+..|++++..+|++..++..+|.++...|++.+|+..+++++..+|.+..+++.+|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  200 (899)
T TIGR02917       121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG  200 (899)
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            34456777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .++...|++++|...|++++.++|++.
T Consensus       201 ~~~~~~g~~~~A~~~~~~a~~~~p~~~  227 (899)
T TIGR02917       201 DLLLSLGNIELALAAYRKAIALRPNNP  227 (899)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCH
Confidence            888888888888888888888888753

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0553|consensus

Probab=99.11  E-value=3e-10  Score=91.96  Aligned_cols=100  Identities=25%  Similarity=0.272  Sum_probs=89.7

Q ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481         99 VATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP  178 (231)
Q Consensus        99 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p  178 (231)
                      .+.+.....-++.++-.+.++|.+|.+.|.|+.|+...+.+|.++|++..+|.++|.+|+.+|+|.+|+..|+++|+++|
T Consensus       101 v~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP  180 (304)
T KOG0553|consen  101 VDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP  180 (304)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence            33333334455677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHH
Q psy13481        179 DSAAAYKFRGRAYRLLGKWE  198 (231)
Q Consensus       179 ~~~~~~~~lg~~~~~~g~~~  198 (231)
                      +|...+.+|.++-..+++..
T Consensus       181 ~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  181 DNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             CcHHHHHHHHHHHHHhcCCC
Confidence            99999999999988888766

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.11  E-value=3.6e-09  Score=85.72  Aligned_cols=103  Identities=15%  Similarity=0.109  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLY---AKRGQSYLQLSKPNACIRDCSVALKINPDSA---AAYKF  186 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~  186 (231)
                      +..++..|..++..|+|++|+..|++++...|.+..+.   +.+|.+|++.++|.+|+..+++.+..+|+++   .+++.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~  111 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM  111 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence            56688999999999999999999999999999886554   8999999999999999999999999999875   48899


Q ss_pred             HHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCHH
Q psy13481        187 RGRAYRLLG---------------K---WEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       187 lg~~~~~~g---------------~---~~~A~~~~~~al~l~p~~~  215 (231)
                      +|.++..++               +   ...|+..|+..++..|+..
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence            999876665               1   2568899999999999854

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.10  E-value=2.9e-09  Score=84.01  Aligned_cols=114  Identities=18%  Similarity=0.229  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA---AAYK  185 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~  185 (231)
                      ++..++..|..++..|+|.+|+..|++++...|++   ..+.+.+|.++++.|+|..|+..+++.+...|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            36788999999999999999999999999998876   68899999999999999999999999999999875   4899


Q ss_pred             HHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCHH----HHHHHHhhch
Q psy13481        186 FRGRAYRLLG-----------KWEEAAVDLRNACKIDFDEQ----ADEWLKEVTP  225 (231)
Q Consensus       186 ~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~~----~~~~l~~~~~  225 (231)
                      .+|.+++.+.           ...+|+..|+..+...|+..    +...+..+..
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~  138 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN  138 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence            9999977654           34589999999999999843    4444444433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.09  E-value=6.1e-10  Score=95.48  Aligned_cols=71  Identities=17%  Similarity=0.293  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALL---YAKRGQSYLQLSKPNACIRDCSVALKIN  177 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~Ai~~~~~al~~~  177 (231)
                      ..+++.+..++++|..++..|+|++|+..|+++|+++|++..+   |+|+|.+|..+|++++|+.++++|+++.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4678889999999999999999999999999999999999854   9999999999999999999999999984

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.09  E-value=5.8e-09  Score=75.02  Aligned_cols=96  Identities=23%  Similarity=0.132  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD---SAAAYKFR  187 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~---~~~~~~~l  187 (231)
                      ..+++.|..+-..|+.++|+.+|++++......   ..++..+|.++..+|++++|+..+++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467899999999999999999999999975544   678999999999999999999999999999898   78888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACK  209 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~  209 (231)
                      +.++...|++++|+..+..++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988875

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.07  E-value=4.3e-09  Score=90.62  Aligned_cols=104  Identities=17%  Similarity=0.111  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      .....+..++..+...|++++|+..|.+++...|.+     ..++..+|.++...|++++|+..|++++..+|.+..+++
T Consensus       139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  218 (389)
T PRK11788        139 FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASI  218 (389)
T ss_pred             chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHH
Confidence            345677888999999999999999999999988865     336778999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        186 FRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+|.++...|++++|+..|++++..+|++
T Consensus       219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        219 LLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            99999999999999999999999998874

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.07  E-value=1.1e-09  Score=71.72  Aligned_cols=69  Identities=29%  Similarity=0.393  Sum_probs=63.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy13481        153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK  221 (231)
Q Consensus       153 la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~  221 (231)
                      +..+|+..++|..|+.++++++.++|.++..|..+|.++..+|++++|...|+++++..|++.....+.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            357889999999999999999999999999999999999999999999999999999999876554443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.06  E-value=5.5e-09  Score=89.58  Aligned_cols=119  Identities=19%  Similarity=0.192  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      .-...+|..|...+..|.+++|+..++..++..|+|+.++-.++.++++.++..+|++.+++++.++|..+..+.++|.+
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a  383 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA  383 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            34677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLN  229 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k  229 (231)
                      +...|++.+|+..+...+.-+|++. .|.++.+.+..+.+
T Consensus       384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence            9999999999999999999999765 77777777766554

>KOG4162|consensus

Probab=99.06  E-value=1.9e-09  Score=96.51  Aligned_cols=107  Identities=21%  Similarity=0.282  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHhhCCCCHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIR--DCSVALKINPDSAAAYKF  186 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~--~~~~al~~~p~~~~~~~~  186 (231)
                      ++..+..++..|..+...|.+.+|...|..|+.++|++......+|.++.+.|+..-|..  .+..+++++|.|+++|+.
T Consensus       680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~  759 (799)
T KOG4162|consen  680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY  759 (799)
T ss_pred             chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence            455678889999999999999999999999999999999999999999999999888777  999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +|.++..+|+.+.|..+|+.|+.+.+.+.
T Consensus       760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  760 LGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            99999999999999999999999988764

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.06  E-value=5e-09  Score=78.22  Aligned_cols=95  Identities=20%  Similarity=0.256  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ..+.+.+|..++..|++++|+..|+.++...|+.   ..+..++|.+++..|+|++|+..++. +.-.+..+.++..+|.
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd  126 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD  126 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence            5677889999999999999999999999987655   45788899999999999999999966 3444556678889999


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q psy13481        190 AYRLLGKWEEAAVDLRNAC  208 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al  208 (231)
                      ++...|++++|+..|++|+
T Consensus       127 i~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  127 IYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999875

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.05  E-value=1e-09  Score=93.88  Aligned_cols=89  Identities=19%  Similarity=0.262  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ..++..+..+..+|.+++..|++++|+..+++++.++|+++.+|+++|.+++.+|+|.+|+..|++++.++|++..+...
T Consensus        30 ~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  109 (356)
T PLN03088         30 DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKL  109 (356)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34555678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q psy13481        187 RGRAYRLLG  195 (231)
Q Consensus       187 lg~~~~~~g  195 (231)
                      ++.|...+.
T Consensus       110 l~~~~~kl~  118 (356)
T PLN03088        110 IKECDEKIA  118 (356)
T ss_pred             HHHHHHHHH
Confidence            999877664

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.03  E-value=2.5e-09  Score=104.18  Aligned_cols=103  Identities=15%  Similarity=0.035  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      .+...+..+|..+...|++++|+..|+++++.+|++..++.++|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus       601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~  680 (1157)
T PRK11447        601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA  680 (1157)
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      +..+|++++|...|++++...|+
T Consensus       681 ~~~~g~~~eA~~~~~~al~~~~~  703 (1157)
T PRK11447        681 WAALGDTAAAQRTFNRLIPQAKS  703 (1157)
T ss_pred             HHhCCCHHHHHHHHHHHhhhCcc
Confidence            99999999999999999998764

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.00  E-value=4.8e-09  Score=79.41  Aligned_cols=97  Identities=28%  Similarity=0.287  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q psy13481        129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK----------PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK--  196 (231)
Q Consensus       129 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~--  196 (231)
                      |+.|.+.++.....+|.+++.+++=|.++..+.+          +.+|+.-|+.||.++|+...+++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6789999999999999999999999999988865          5678889999999999999999999999988775  


Q ss_pred             ---------HHHHHHHHHHHHhcCCCHHHHHHHHhhch
Q psy13481        197 ---------WEEAAVDLRNACKIDFDEQADEWLKEVTP  225 (231)
Q Consensus       197 ---------~~~A~~~~~~al~l~p~~~~~~~l~~~~~  225 (231)
                               |++|..+|++|...+|+++.+..-.++..
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA  124 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                     88899999999999999876655544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.99  E-value=4.6e-09  Score=78.31  Aligned_cols=86  Identities=13%  Similarity=0.058  Sum_probs=76.3

Q ss_pred             HHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-H
Q psy13481        139 AIKLN-PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-A  216 (231)
Q Consensus       139 al~~~-p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~  216 (231)
                      ...+. ++..+..+.+|..++..|++++|...|+.+..++|.+...|++||.|+..+|+|++|+..|.+|+.++|++. .
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            34456 778889999999999999999999999999999999999999999999999999999999999999999865 4


Q ss_pred             HHHHHhhc
Q psy13481        217 DEWLKEVT  224 (231)
Q Consensus       217 ~~~l~~~~  224 (231)
                      ...+..|.
T Consensus       106 ~~~ag~c~  113 (157)
T PRK15363        106 PWAAAECY  113 (157)
T ss_pred             HHHHHHHH
Confidence            44444444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.98  E-value=2e-08  Score=89.66  Aligned_cols=108  Identities=21%  Similarity=0.254  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHH---------------------------------
Q psy13481        112 KSNEKKREAIHAYNDGK---FEDAVNAYSEAIKLNPSSALLYAKRGQ---------------------------------  155 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~---~~~Ai~~~~~al~~~p~~~~~~~~la~---------------------------------  155 (231)
                      .+..++.+|..++..++   +..|+.+|++|++++|+++.+|..++.                                 
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            45667778887776655   789999999999999998665554443                                 


Q ss_pred             -----------HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHH
Q psy13481        156 -----------SYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWL  220 (231)
Q Consensus       156 -----------~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l  220 (231)
                                 .+...|++++|...+++|+.++| +..+|..+|.++...|++++|...|++|+.++|.+..+-|.
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~  492 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWI  492 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHH
Confidence                       33345668889999999999998 57899999999999999999999999999999986544443

>PRK11906 transcriptional regulator; Provisional

Probab=98.97  E-value=1.5e-08  Score=87.22  Aligned_cols=116  Identities=14%  Similarity=-0.013  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q psy13481        109 DIDKSNEKKREAIHAYND---------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD  179 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~---------~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~  179 (231)
                      +++.+.++..+|.+++..         .+..+|..+-++|++++|+++.++..+|.++...++++.|+..|++|+.++|+
T Consensus       291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn  370 (458)
T PRK11906        291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD  370 (458)
T ss_pred             CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc
Confidence            444455666666665543         45678999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q psy13481        180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVT  224 (231)
Q Consensus       180 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~  224 (231)
                      .+.+|+.+|+++...|+.++|...+++|++++|.......++.+.
T Consensus       371 ~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~  415 (458)
T PRK11906        371 IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECV  415 (458)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence            999999999999999999999999999999999866555555543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.96  E-value=3.6e-09  Score=68.23  Aligned_cols=59  Identities=27%  Similarity=0.295  Sum_probs=55.5

Q ss_pred             HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        157 YLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       157 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ++..|+|++|+..|++++..+|++..+++.+|.||...|++++|...+.+++..+|++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~   59 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP   59 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence            36789999999999999999999999999999999999999999999999999999965

...

>KOG2076|consensus

Probab=98.96  E-value=1.5e-08  Score=92.17  Aligned_cols=105  Identities=21%  Similarity=0.147  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      ++.....++.+|.++-.+|+.++|+..+-.|-.++|.+...|..++....++|++.+|+-+|.+||+.+|.+...++.++
T Consensus       169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers  248 (895)
T KOG2076|consen  169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERS  248 (895)
T ss_pred             CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            35567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ..|..+|++..|...|.+.+.+.|.
T Consensus       249 ~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  249 SLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             HHHHHhChHHHHHHHHHHHHhhCCc
Confidence            9999999999999999999999994

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.95  E-value=5.5e-09  Score=81.25  Aligned_cols=110  Identities=19%  Similarity=0.161  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      +...+..++.+|..+-+.|-+.-|.-.|.+++.++|+-+.+++.+|..+...|+|+.|...|+.+++++|.+--+..|+|
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg  140 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  140 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence            34458889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHHHHH
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQADE  218 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  218 (231)
                      .+++.-|+++-|...+.+-..-||.+....
T Consensus       141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~  170 (297)
T COG4785         141 IALYYGGRYKLAQDDLLAFYQDDPNDPFRS  170 (297)
T ss_pred             eeeeecCchHhhHHHHHHHHhcCCCChHHH
Confidence            999999999999999999999999876433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.95  E-value=1.8e-08  Score=86.48  Aligned_cols=109  Identities=21%  Similarity=0.253  Sum_probs=96.5

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      +....|++...+-..+..++..++..+|++.+++++.+.|+....+.++|.+|++.|++.+|+..++..+..+|+++..|
T Consensus       332 L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w  411 (484)
T COG4783         332 LIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGW  411 (484)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHH
Confidence            34455677777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ..++.+|..+|+-.++...+.....+.-+
T Consensus       412 ~~LAqay~~~g~~~~a~~A~AE~~~~~G~  440 (484)
T COG4783         412 DLLAQAYAELGNRAEALLARAEGYALAGR  440 (484)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence            99999988888877777766666666554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.95  E-value=1e-08  Score=87.22  Aligned_cols=105  Identities=16%  Similarity=0.021  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----HH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA----AA  183 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~----~~  183 (231)
                      ..+.....+...|..+...|++++|+..++++++++|++..++..+|.++...|++++|+..+++++...|.++    ..
T Consensus       109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~  188 (355)
T cd05804         109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHN  188 (355)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHH
Confidence            44555677778899999999999999999999999999999999999999999999999999999999987543    35


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      |..+|.++...|++++|+..|.+++...|
T Consensus       189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         189 WWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            67899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3060|consensus

Probab=98.94  E-value=1.6e-08  Score=80.25  Aligned_cols=102  Identities=17%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      -......|..+-..|+|++|+++|+..++-+|++...+-+.-.+...+|+..+||+.++..++..+.+..+|..++.+|.
T Consensus        86 ~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~  165 (289)
T KOG3060|consen   86 KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL  165 (289)
T ss_pred             hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            34445566666666677777777776666666666665555555556666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ..|+|+.|..+|+..+-+.|.+
T Consensus       166 ~~~~f~kA~fClEE~ll~~P~n  187 (289)
T KOG3060|consen  166 SEGDFEKAAFCLEELLLIQPFN  187 (289)
T ss_pred             hHhHHHHHHHHHHHHHHcCCCc
Confidence            6666666666666666666654

>KOG3060|consensus

Probab=98.94  E-value=1.1e-08  Score=81.26  Aligned_cols=114  Identities=16%  Similarity=0.080  Sum_probs=101.3

Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q psy13481        101 TDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS  180 (231)
Q Consensus       101 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~  180 (231)
                      ++..+..+++.+...++..-...-..|+--+||..++.-++..+++.++|..++.+|+..|+|.+|..+++.++-++|.+
T Consensus       108 ~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n  187 (289)
T KOG3060|consen  108 YYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN  187 (289)
T ss_pred             HHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc
Confidence            33344556677777777777778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCH
Q psy13481        181 AAAYKFRGRAYRLLG---KWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       181 ~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~  214 (231)
                      +..+..+|.+++-+|   +++-|.++|.++++++|.+
T Consensus       188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~  224 (289)
T KOG3060|consen  188 PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN  224 (289)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence            999999999998888   5777999999999999943

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.92  E-value=1.4e-08  Score=80.95  Aligned_cols=105  Identities=18%  Similarity=0.273  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      .+++... ...+..+...|+-+.+..+..++...+|.+...+...|...+..|+|..|+..++++..+.|+++.+|..+|
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg  141 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG  141 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence            3444555 778889999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+|...|++++|...|.+++++.|.+
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~~  167 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPNE  167 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccCC
Confidence            99999999999999999999999874

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.91  E-value=5.4e-09  Score=89.78  Aligned_cols=70  Identities=20%  Similarity=0.165  Sum_probs=67.2

Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA---YKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       142 ~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      .+|+++.+|+++|.+|+.+|+|++|+..|+++|+++|++..+   |+++|.+|..+|++++|+.+|++|+++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999854   9999999999999999999999999983

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.91  E-value=2.5e-08  Score=81.69  Aligned_cols=117  Identities=17%  Similarity=0.132  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      ..++..+...|-...+|++||+.-++.+.+.+..     +.+|+.+|..+....+.+.|+..+.+|++-+|.+..+-..+
T Consensus       141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~l  220 (389)
T COG2956         141 EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIIL  220 (389)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhh
Confidence            3455666777777788888888888877776654     66778888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC--HHHHHHHHhhchhhhc
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFD--EQADEWLKEVTPNKLN  229 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~l~~~~~~~~k  229 (231)
                      |.++...|+|+.|++.|+.+++.||+  ..+...+.+++..+.+
T Consensus       221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~  264 (389)
T COG2956         221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK  264 (389)
T ss_pred             hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence            88888888888888888888888887  4466667777666554

>TIGR00540 hemY_coli hemY protein

Probab=98.90  E-value=4.2e-08  Score=85.53  Aligned_cols=121  Identities=14%  Similarity=0.034  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--HH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLY--AKRGQSYLQLSKPNACIRDCSVALKINPDSA--AA  183 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~--~~  183 (231)
                      ..+++...+...|..+...|++++|+..++++++..|++....  .-+.......++...++..++++++..|+++  ..
T Consensus       258 ~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~l  337 (409)
T TIGR00540       258 HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCI  337 (409)
T ss_pred             HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHH
Confidence            3334678888899999999999999999999999999987532  3344445556889999999999999999999  88


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCHHHHHHHHhhchhhh
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLR--NACKIDFDEQADEWLKEVTPNKL  228 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~--~al~l~p~~~~~~~l~~~~~~~~  228 (231)
                      +..+|++++.+|+|++|.++|+  .+++.+|++.....+.++..+++
T Consensus       338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g  384 (409)
T TIGR00540       338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG  384 (409)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence            8999999999999999999999  68889999887777777776554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.90  E-value=1.9e-09  Score=71.55  Aligned_cols=66  Identities=27%  Similarity=0.362  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---C-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        145 SSALLYAKRGQSYLQLSKPNACIRDCSVALKIN---P-D---SAAAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       145 ~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~---p-~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                      +-+.++.++|.+|..+|+|++|+.+|++++.+.   + .   .+.+++++|.++..+|++++|+..+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            334566666666666666666666666666542   1 1   2345666677777777777777777666654

...

>KOG1128|consensus

Probab=98.89  E-value=8e-09  Score=92.19  Aligned_cols=101  Identities=23%  Similarity=0.333  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +.+.+..|...+++++|.++..+++..++++|-....|+++|.+..++++++.|..+|.+++.++|++..+|.|++.+|.
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            44556667777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC
Q psy13481        193 LLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~  213 (231)
                      .+|+..+|...+..|++.+.+
T Consensus       565 ~~~~k~ra~~~l~EAlKcn~~  585 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEALKCNYQ  585 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCC
Confidence            999999999999999999854

>KOG1125|consensus

Probab=98.89  E-value=1.8e-08  Score=87.92  Aligned_cols=97  Identities=19%  Similarity=0.213  Sum_probs=93.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy13481        117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK  196 (231)
Q Consensus       117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~  196 (231)
                      +..|..++++|+..+|+-.|+.++..+|.++++|..||.++...++=..||..+++|++++|+|..++..||++|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy13481        197 WEEAAVDLRNACKIDFD  213 (231)
Q Consensus       197 ~~~A~~~~~~al~l~p~  213 (231)
                      -..|+++|.+=+...|.
T Consensus       369 q~~Al~~L~~Wi~~~p~  385 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPK  385 (579)
T ss_pred             HHHHHHHHHHHHHhCcc
Confidence            99999999988877654

>KOG0624|consensus

Probab=98.89  E-value=4.6e-08  Score=80.89  Aligned_cols=101  Identities=20%  Similarity=0.279  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL  193 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~  193 (231)
                      ..+......++..|++..||+..+..|++.|.++.++..|+.||...|+...||.++..+-.+..+|...++.++..++.
T Consensus       156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~  235 (504)
T KOG0624|consen  156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT  235 (504)
T ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence            44556667778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCH
Q psy13481        194 LGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       194 ~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .|+.+.++...+.+++++|++
T Consensus       236 vgd~~~sL~~iRECLKldpdH  256 (504)
T KOG0624|consen  236 VGDAENSLKEIRECLKLDPDH  256 (504)
T ss_pred             hhhHHHHHHHHHHHHccCcch
Confidence            999999999999999999985

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.87  E-value=9.2e-09  Score=68.24  Aligned_cols=68  Identities=22%  Similarity=0.325  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL---N----PSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN  177 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~---~----p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~  177 (231)
                      ++.+..+..+|.++...|+|++|+++|++++.+   .    |..+.+++++|.++..+|++++|+..+++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            567889999999999999999999999999976   1    2236789999999999999999999999999863

...

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.87  E-value=3.9e-09  Score=87.22  Aligned_cols=103  Identities=24%  Similarity=0.301  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      ..|++...+..++..+...|+++++...+....+..|.++.+|..+|.++..+|++++|+.+|++++..+|+++..+..+
T Consensus       175 ~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~  254 (280)
T PF13429_consen  175 LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAY  254 (280)
T ss_dssp             H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccc
Confidence            34556677778888889999999999999998888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l  210 (231)
                      |.++...|+.++|...+++++..
T Consensus       255 a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  255 ADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHT------------------
T ss_pred             ccccccccccccccccccccccc
Confidence            99999999999999999988753

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.85  E-value=5.8e-08  Score=90.81  Aligned_cols=101  Identities=16%  Similarity=0.064  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL  193 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~  193 (231)
                      ...+..+...++.|++..|++.|+++++.+|+++.+...++.++...|++++|+..|++++.-.|.+...+..+|.++..
T Consensus        35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~  114 (822)
T PRK14574         35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN  114 (822)
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555532222444444444444444444444442222223333333444444


Q ss_pred             cCCHHHHHHHHHHHHhcCCCH
Q psy13481        194 LGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       194 ~g~~~~A~~~~~~al~l~p~~  214 (231)
                      +|+|++|+..|+++++.+|++
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n  135 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTN  135 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCC
Confidence            444444444444444444443

>KOG0543|consensus

Probab=98.84  E-value=5.1e-08  Score=82.20  Aligned_cols=100  Identities=19%  Similarity=0.194  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+.++|.++.+.++|.+|+...+++|.+.|+|..++|++|.++..+|+|+.|+.+|+++++++|.|-.+...+..+..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HcCCHHHH-HHHHHHHHhcCC
Q psy13481        193 LLGKWEEA-AVDLRNACKIDF  212 (231)
Q Consensus       193 ~~g~~~~A-~~~~~~al~l~p  212 (231)
                      ...++.+. .+.|.+.+..-+
T Consensus       337 k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            77776665 788888887654

>KOG2002|consensus

Probab=98.81  E-value=7.5e-08  Score=88.42  Aligned_cols=112  Identities=21%  Similarity=0.149  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      -.+..++.+|..+...|+|++|..+|.++++.+|++ .-.++.+|.+|++.|++..|+.+|++++..+|++......+|.
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~  384 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC  384 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            345667777777777777777777777777777776 5667777777777777777777777777777777777777777


Q ss_pred             HHHHcC----CHHHHHHHHHHHHhcCCCHH-HHHHHHh
Q psy13481        190 AYRLLG----KWEEAAVDLRNACKIDFDEQ-ADEWLKE  222 (231)
Q Consensus       190 ~~~~~g----~~~~A~~~~~~al~l~p~~~-~~~~l~~  222 (231)
                      .|...+    ..+.|...+.++++..|.+. ++-.+.+
T Consensus       385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq  422 (1018)
T KOG2002|consen  385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ  422 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            777765    55667777777777777543 4433333

>KOG0550|consensus

Probab=98.81  E-value=9.9e-09  Score=86.41  Aligned_cols=108  Identities=23%  Similarity=0.320  Sum_probs=98.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481        106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------------ALLYAKRGQSYLQLSKPNACIRDCSVA  173 (231)
Q Consensus       106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~~Ai~~~~~a  173 (231)
                      ...+..++.+++.+|.+++-..+.+.|+.+|++++.++|+.            ...|..+|.-.++.|+|..|.++|..+
T Consensus       196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea  275 (486)
T KOG0550|consen  196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA  275 (486)
T ss_pred             HhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence            34566778999999999999999999999999999999976            456788899999999999999999999


Q ss_pred             HhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        174 LKINPDS----AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       174 l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      |.++|.|    +..|.+++.+...+|+..+|+.+...+++|+|.
T Consensus       276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s  319 (486)
T KOG0550|consen  276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS  319 (486)
T ss_pred             hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence            9999986    457999999999999999999999999999975

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.79  E-value=1.9e-07  Score=81.15  Aligned_cols=122  Identities=16%  Similarity=0.163  Sum_probs=103.0

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      +....+++.......|..+...|+.++|...++++++..| +.......+.+  ..+++.+++..+++.++.+|+++..+
T Consensus       255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~  331 (398)
T PRK10747        255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLW  331 (398)
T ss_pred             CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHH
Confidence            3445556677888899999999999999999999999544 55555444443  44999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhhc
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN  229 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~k  229 (231)
                      ..+|.++...|+|++|...|++++++.|++....++..+.++..+
T Consensus       332 l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~  376 (398)
T PRK10747        332 STLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK  376 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999998877778777776543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.79  E-value=6.8e-07  Score=66.63  Aligned_cols=119  Identities=21%  Similarity=0.189  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AA  182 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~  182 (231)
                      ....+...+..+...+..+++..+...++..+..+|++   ..+...+|.+++..|+|++|+..|+.++...|+.   ..
T Consensus         7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~   86 (145)
T PF09976_consen    7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL   86 (145)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence            34456777888888889999999999999999999998   6778889999999999999999999999988665   35


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhh
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNK  227 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~  227 (231)
                      +.+.++.++...|++++|+..++....-.....+..+...+.-..
T Consensus        87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~  131 (145)
T PF09976_consen   87 ARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQ  131 (145)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHC
Confidence            788999999999999999999977432222334555555555443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.78  E-value=2e-07  Score=76.54  Aligned_cols=114  Identities=17%  Similarity=0.146  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-AAYKFRG  188 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~~~lg  188 (231)
                      ...+..+..+|..+....+++.|+..+.+|+..+|++..+-..+|.++...|+|..|+..++.+++.||... .+.-.+.
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~  256 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY  256 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999999999999999999999999999999864 6888999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV  223 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~  223 (231)
                      .||..+|+.++.+.++.++....++..+.-.+-++
T Consensus       257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~l  291 (389)
T COG2956         257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADL  291 (389)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHH
Confidence            99999999999999999999999886554444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.78  E-value=2e-07  Score=79.38  Aligned_cols=70  Identities=16%  Similarity=0.100  Sum_probs=61.8

Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        144 PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       144 p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      |....++..+|.++...|++.+|+..+++++.++|+++.++..+|.++...|++++|+..+++++...|.
T Consensus       111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            3333444566778899999999999999999999999999999999999999999999999999998874

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2003|consensus

Probab=98.74  E-value=3.3e-08  Score=84.42  Aligned_cols=112  Identities=16%  Similarity=0.118  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ++.++...|+..+.+|++++|.+.|++++.-+.....+++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY  568 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34556667777788889999999999988887777888888888888888888888888887777777888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      ..+.+...|++.|.++..+-|++. +...+.++
T Consensus       569 e~led~aqaie~~~q~~slip~dp~ilskl~dl  601 (840)
T KOG2003|consen  569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADL  601 (840)
T ss_pred             HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence            888888888888888888888764 33334333

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.74  E-value=2e-07  Score=80.19  Aligned_cols=97  Identities=19%  Similarity=0.183  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL  193 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~  193 (231)
                      .....++..+...++-.+|+..+.+++..+|.++..+...|..++..++|+.|+..+++++.+.|.+...|+.|+.+|..
T Consensus       201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~  280 (395)
T PF09295_consen  201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ  280 (395)
T ss_pred             cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence            34556788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhc
Q psy13481        194 LGKWEEAAVDLRNACKI  210 (231)
Q Consensus       194 ~g~~~~A~~~~~~al~l  210 (231)
                      +|+|+.|+..+..+--.
T Consensus       281 ~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  281 LGDFENALLALNSCPML  297 (395)
T ss_pred             cCCHHHHHHHHhcCcCC
Confidence            99999999888755333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1129|consensus

Probab=98.73  E-value=2.8e-08  Score=81.69  Aligned_cols=105  Identities=15%  Similarity=0.083  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      +.-+.+...+...|.++-..+++++|+++|+.+++.+|.+.++....|.-|+.-++++-|+.+|++.+++.-.++..+++
T Consensus       284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~N  363 (478)
T KOG1129|consen  284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCN  363 (478)
T ss_pred             hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhh
Confidence            33455566667777778888888888888888888888877777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      +|.|++..++++-++..|++|+..-
T Consensus       364 igLCC~yaqQ~D~~L~sf~RAlsta  388 (478)
T KOG1129|consen  364 IGLCCLYAQQIDLVLPSFQRALSTA  388 (478)
T ss_pred             HHHHHHhhcchhhhHHHHHHHHhhc
Confidence            7777777777777777777777653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.73  E-value=4.2e-08  Score=91.71  Aligned_cols=94  Identities=11%  Similarity=0.109  Sum_probs=49.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy13481        120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEE  199 (231)
Q Consensus       120 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  199 (231)
                      |..+...|+|++|++.|+++++.+|+++.++..++.++...+++++|+..+++++..+|.+... ..++.++..++++.+
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~  187 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD  187 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH
Confidence            4455555555555555555555555555555555555555555555555555555555553332 333444444444444


Q ss_pred             HHHHHHHHHhcCCCH
Q psy13481        200 AAVDLRNACKIDFDE  214 (231)
Q Consensus       200 A~~~~~~al~l~p~~  214 (231)
                      |+..|++++..+|++
T Consensus       188 AL~~~ekll~~~P~n  202 (822)
T PRK14574        188 ALQASSEAVRLAPTS  202 (822)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            555555555555543

>KOG1840|consensus

Probab=98.70  E-value=1.1e-07  Score=84.06  Aligned_cols=107  Identities=22%  Similarity=0.217  Sum_probs=94.9

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481        105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI  176 (231)
Q Consensus       105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~  176 (231)
                      .....+........+|..+..+|+|++|+..++.+++.        +|........+|.+|..+++|.+|+..|++|+.+
T Consensus       191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i  270 (508)
T KOG1840|consen  191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI  270 (508)
T ss_pred             cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34456666778888999999999999999999999999        7777778888999999999999999999999987


Q ss_pred             C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        177 N--------PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       177 ~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      .        |..+.++.+||.+|...|++.+|..++.+|++|.
T Consensus       271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            4        3445689999999999999999999999999885

>KOG1156|consensus

Probab=98.69  E-value=1.6e-07  Score=83.01  Aligned_cols=101  Identities=23%  Similarity=0.275  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL  193 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~  193 (231)
                      ..++..+.-.+..++|.+.+...+..+...|..++.+...|..+..+|+-++|......++..++.+.-.|+.+|.+++.
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            45566666667777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCH
Q psy13481        194 LGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       194 ~g~~~~A~~~~~~al~l~p~~  214 (231)
                      -.+|++|+++|+.|++++|+|
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN  108 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDN  108 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCc
Confidence            777777777777777777765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.69  E-value=1.9e-07  Score=71.31  Aligned_cols=92  Identities=13%  Similarity=0.065  Sum_probs=77.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCH
Q psy13481        123 AYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFRGRAYRLLGKW  197 (231)
Q Consensus       123 ~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~  197 (231)
                      ++-...|..+...+...++.++..  ..+|+++|.++...|+|++|+..|++++.+.|++   +.+++++|.++...|++
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~   88 (168)
T CHL00033          9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH   88 (168)
T ss_pred             cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence            344455667777776665565555  6788999999999999999999999999998764   45899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCH
Q psy13481        198 EEAAVDLRNACKIDFDE  214 (231)
Q Consensus       198 ~~A~~~~~~al~l~p~~  214 (231)
                      ++|+..|++++.++|..
T Consensus        89 ~eA~~~~~~Al~~~~~~  105 (168)
T CHL00033         89 TKALEYYFQALERNPFL  105 (168)
T ss_pred             HHHHHHHHHHHHhCcCc
Confidence            99999999999999974

>KOG1173|consensus

Probab=98.67  E-value=1e-07  Score=83.11  Aligned_cols=112  Identities=15%  Similarity=0.139  Sum_probs=103.3

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481        104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA  183 (231)
Q Consensus       104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~  183 (231)
                      .+.+..|..+-.|+..|.-++.-|++.+|..+|.++..++|..+.+|...|..+.-.|..++|+.+|.+|-++.|.....
T Consensus       303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP  382 (611)
T KOG1173|consen  303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP  382 (611)
T ss_pred             HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch
Confidence            34456677788999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ...+|.=|..+++++.|.++|.+|+.+.|.+.
T Consensus       383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp  414 (611)
T KOG1173|consen  383 SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP  414 (611)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence            88899999999999999999999999999864

>KOG1840|consensus

Probab=98.66  E-value=1.8e-07  Score=82.67  Aligned_cols=103  Identities=26%  Similarity=0.303  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN---  177 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~---  177 (231)
                      ++.-+..+...|..+...++|.+|+..|++|+.+        +|..+.++.++|.+|.+.|+|.+|..+|++|+++.   
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~  316 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL  316 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence            3444556667999999999999999999999987        66668899999999999999999999999999885   


Q ss_pred             -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        178 -----PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       178 -----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                           |.-...+.+++.++..++++++|+..+++++++.
T Consensus       317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence                 2335578999999999999999999999999874

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.65  E-value=2.3e-07  Score=71.22  Aligned_cols=73  Identities=18%  Similarity=0.211  Sum_probs=65.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        143 NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       143 ~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ++..+.+++++|.++...|++++|+.+|++++.+.|+.   ..+++++|.++..+|++++|+..|++++.+.|++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  106 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP  106 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence            33557789999999999999999999999999988764   46899999999999999999999999999999754

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.65  E-value=3.8e-07  Score=85.17  Aligned_cols=103  Identities=16%  Similarity=0.015  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--------
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA--------  181 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~--------  181 (231)
                      +....++..+...+...+++++|+..++.+++.+|+...+|+.+|.+++..+++..+...  .++.+.+.+.        
T Consensus        28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~  105 (906)
T PRK14720         28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI  105 (906)
T ss_pred             cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence            344667777777887888888888888888888888888888777777777776665554  5555554444        


Q ss_pred             -----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        182 -----------AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       182 -----------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                                 .+++.+|.||..+|++++|...|+++++++|++
T Consensus       106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n  149 (906)
T PRK14720        106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN  149 (906)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc
Confidence                       677777777777777777777777777777765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.64  E-value=4.6e-07  Score=64.39  Aligned_cols=68  Identities=24%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ...++.+|..+...|++.+|+..|.+++..+|++   ..+++.+|.++...|+++.|+..|+.++..+|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            3578999999999999999999999999999887   5789999999999999999999999999999874

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.64  E-value=3.9e-07  Score=60.68  Aligned_cols=67  Identities=33%  Similarity=0.459  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +++++|.+++..|++.+|+..+++++...|.+..+++.+|.++...|+++.|...|++++.+.|.+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            5788999999999999999999999999999999999999999999999999999999999999764

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.62  E-value=1.4e-06  Score=66.45  Aligned_cols=109  Identities=18%  Similarity=0.202  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIK-LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAAAYKFRG  188 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~lg  188 (231)
                      +....+.+|+.+...|++.+|..+|++++. +..++...+..++.+.+..+++..|...+++..+.+|.  .+.....+|
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a  167 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA  167 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence            346678899999999999999999999986 57788999999999999999999999999999999984  677888999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHH
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQADEWL  220 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l  220 (231)
                      .++...|.+..|...|+.++...|+..+.-..
T Consensus       168 R~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y  199 (251)
T COG4700         168 RTLAAQGKYADAESAFEVAISYYPGPQARIYY  199 (251)
T ss_pred             HHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999999999986544333

>KOG2002|consensus

Probab=98.59  E-value=4e-07  Score=83.79  Aligned_cols=117  Identities=19%  Similarity=0.139  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-AAA  183 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~-~~~  183 (231)
                      .+..++.++..+|+.++..|+|..+..+..-++...-+.   +..+|++|.+|..+|+|++|..+|..++..++++ .-.
T Consensus       265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~  344 (1018)
T KOG2002|consen  265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP  344 (1018)
T ss_pred             hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence            445567888889999999999999999999998875433   5669999999999999999999999999999988 678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      ++.+|..|...|+++.|..+|++.++..|++. ....+.-+.
T Consensus       345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly  386 (1018)
T KOG2002|consen  345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY  386 (1018)
T ss_pred             ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence            89999999999999999999999999999864 555555444

>KOG1129|consensus

Probab=98.59  E-value=8.2e-08  Score=79.00  Aligned_cols=110  Identities=12%  Similarity=0.038  Sum_probs=90.8

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q psy13481        104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP--S-SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS  180 (231)
Q Consensus       104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p--~-~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~  180 (231)
                      .+..........+.+.|.+.+-.++++-++..|.+|+....  . -++.|+|+|.+....|++.-|.++|+-++..+++|
T Consensus       349 RiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h  428 (478)
T KOG1129|consen  349 RILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH  428 (478)
T ss_pred             HHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence            33334444456777888888888899999999999887643  2 37889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ..++.++|..-...|+.++|...+..|-...|+
T Consensus       429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  429 GEALNNLAVLAARSGDILGARSLLNAAKSVMPD  461 (478)
T ss_pred             HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence            999999999999999999999999998888886

>KOG4162|consensus

Probab=98.57  E-value=9.2e-07  Score=79.70  Aligned_cols=117  Identities=23%  Similarity=0.130  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...|...|..+...++-++|..++.++-.++|..+..|+.+|.++...|++.+|...|..|+.++|+++.+...+|.++.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            34566677778888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHH--HHHHHHhcCCC-HHHHHHHHhhchhhhc
Q psy13481        193 LLGKWEEAAV--DLRNACKIDFD-EQADEWLKEVTPNKLN  229 (231)
Q Consensus       193 ~~g~~~~A~~--~~~~al~l~p~-~~~~~~l~~~~~~~~k  229 (231)
                      ..|+..-|.+  .+..++++||. .++|..+.++......
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd  769 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD  769 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence            9999999999  99999999997 5599999988876654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=1.3e-06  Score=71.27  Aligned_cols=90  Identities=18%  Similarity=0.196  Sum_probs=81.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q psy13481        127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG---KWEEAAVD  203 (231)
Q Consensus       127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~  203 (231)
                      ...+.-+.-++.-+..||+++.-|..+|.+|+.+|++..|...|.+|+.+.|+|+..+..+|.+++...   .-.++...
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            457788888999999999999999999999999999999999999999999999999999999877665   35678999


Q ss_pred             HHHHHhcCCCHHH
Q psy13481        204 LRNACKIDFDEQA  216 (231)
Q Consensus       204 ~~~al~l~p~~~~  216 (231)
                      |.+++++||++..
T Consensus       216 l~~al~~D~~~ir  228 (287)
T COG4235         216 LRQALALDPANIR  228 (287)
T ss_pred             HHHHHhcCCccHH
Confidence            9999999998753

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.55  E-value=1.3e-05  Score=59.67  Aligned_cols=112  Identities=21%  Similarity=0.244  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----------------------ALLYAKRGQSYLQLSKPNACIRD  169 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~Ai~~  169 (231)
                      ....+...|......++...++..+.+++.+....                      ..+...++..+...|++..|+..
T Consensus         5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~   84 (146)
T PF03704_consen    5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL   84 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            34555666777888899999999999999884321                      34566778889999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCHHHHHHHHhh
Q psy13481        170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK-------IDFDEQADEWLKEV  223 (231)
Q Consensus       170 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------l~p~~~~~~~l~~~  223 (231)
                      +++++.++|.+-.+|..+-.+|..+|+...|+..|++...       +.|......+..++
T Consensus        85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~i  145 (146)
T PF03704_consen   85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREI  145 (146)
T ss_dssp             HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHh
Confidence            9999999999999999999999999999999999988854       35666655555443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1128|consensus

Probab=98.53  E-value=2.9e-07  Score=82.42  Aligned_cols=102  Identities=19%  Similarity=0.161  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      -....|+.+|.++.+.+++..|...|.+++.+.|++..+|+|++.+|.++++-.+|...+.+|+.-+-.|..+|-|.-.+
T Consensus       517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlv  596 (777)
T KOG1128|consen  517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLV  596 (777)
T ss_pred             cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhh
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCC
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      ....|.|++|+.+|.+.+.+.-
T Consensus       597 svdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  597 SVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             hhhcccHHHHHHHHHHHHHhhh
Confidence            9999999999999999988753

>KOG2003|consensus

Probab=98.52  E-value=5.1e-07  Score=77.30  Aligned_cols=115  Identities=16%  Similarity=0.145  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ..+..-..+++..|..+-..|+.++|+++|-+.-.+--+++.+++.++.+|..+.+..+||+++.++..+-|+++.++..
T Consensus       518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk  597 (840)
T KOG2003|consen  518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK  597 (840)
T ss_pred             cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence            33444467788888888888888888888888777777788888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDE-QADEWLK  221 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~l~  221 (231)
                      +|..|-..|+...|..++-...+..|.+ +..+|+.
T Consensus       598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~  633 (840)
T KOG2003|consen  598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA  633 (840)
T ss_pred             HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence            8888888888766666666666666643 2455554

>KOG1156|consensus

Probab=98.52  E-value=3.6e-07  Score=80.90  Aligned_cols=107  Identities=13%  Similarity=0.034  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      ..+++...+...|..+...|+-++|..+...+++.++.+..+|.-+|.++...++|.+||.+|..|+.+.|+|...|.-+
T Consensus        36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl  115 (700)
T KOG1156|consen   36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL  115 (700)
T ss_pred             hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            34444455555566666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      +.....+++++.......+.+.+.|..
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql~~~~  142 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQLRPSQ  142 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence            666666666665555555555555543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.51  E-value=2.9e-07  Score=61.98  Aligned_cols=61  Identities=25%  Similarity=0.315  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA  173 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~a  173 (231)
                      +...++.+|.+++..|+|.+|+..+++ +..++.+...++.+|.|++++|+|++|+..++++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            456777899999999999999999999 8889988899999999999999999999999875

>TIGR00540 hemY_coli hemY protein

Probab=98.50  E-value=9.6e-06  Score=70.77  Aligned_cols=96  Identities=21%  Similarity=0.220  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481        116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA-LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL  194 (231)
Q Consensus       116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~  194 (231)
                      +...|..+...|+++.|..+|.++.+..|++. .+...++.++...|+++.|+..+++.++.+|+++.++..++.++...
T Consensus       121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~  200 (409)
T TIGR00540       121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS  200 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            44556666667777777777777777666654 34444577777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHhcC
Q psy13481        195 GKWEEAAVDLRNACKID  211 (231)
Q Consensus       195 g~~~~A~~~~~~al~l~  211 (231)
                      |+|++|...+.+..+..
T Consensus       201 ~d~~~a~~~l~~l~k~~  217 (409)
T TIGR00540       201 GAWQALDDIIDNMAKAG  217 (409)
T ss_pred             hhHHHHHHHHHHHHHcC
Confidence            77777777777777653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.48  E-value=7.8e-07  Score=83.13  Aligned_cols=102  Identities=16%  Similarity=0.093  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHH-----------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFED-----------------AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV  172 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~-----------------Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~  172 (231)
                      ++....++..|..+++.+++.+                 ++++|...+...+++-.+++.+|.||-++|++++|+..|++
T Consensus        62 P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer  141 (906)
T PRK14720         62 KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWER  141 (906)
T ss_pred             CcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            3445555566665555555444                 44444445555555558999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       173 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      +++++|.|+.+++++|..|... +.++|+..+.+|+...-
T Consensus       142 ~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        142 LVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999 99999999999998754

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.48  E-value=7.4e-06  Score=64.61  Aligned_cols=102  Identities=25%  Similarity=0.328  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhCC
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSK-----------PNACIRDCSVALKINP  178 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~-----------~~~Ai~~~~~al~~~p  178 (231)
                      ..+.+.+|..++..|+|..|+..|++.++.+|++   ..+++.+|.+++.+.+           ..+|+..|+..+...|
T Consensus        42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP  121 (203)
T PF13525_consen   42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP  121 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence            4677889999999999999999999999999987   5689999999877643           4589999999999999


Q ss_pred             CCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        179 DSAAA-----------------YKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       179 ~~~~~-----------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ++..+                 -+..|..|...|.|..|+.-++.+++-.|+.
T Consensus       122 ~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t  174 (203)
T PF13525_consen  122 NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT  174 (203)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC
Confidence            97432                 1346888999999999999999999999983

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.47  E-value=4.5e-06  Score=72.55  Aligned_cols=98  Identities=18%  Similarity=0.170  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481        116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLY-AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL  194 (231)
Q Consensus       116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~  194 (231)
                      +...+......|+++.|..+|.++.+..|+...+. ...+.++...|++++|+..++++++.+|+++.++..++.+|...
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~  200 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT  200 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            33445666999999999999999999999885443 34599999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCC
Q psy13481        195 GKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       195 g~~~~A~~~~~~al~l~p~  213 (231)
                      |+|++|+..+.+..+..+.
T Consensus       201 gdw~~a~~~l~~l~k~~~~  219 (398)
T PRK10747        201 GAWSSLLDILPSMAKAHVG  219 (398)
T ss_pred             HhHHHHHHHHHHHHHcCCC
Confidence            9999999888888877654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.47  E-value=1.8e-07  Score=51.77  Aligned_cols=32  Identities=34%  Similarity=0.525  Sum_probs=19.8

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481        170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAA  201 (231)
Q Consensus       170 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  201 (231)
                      |+++|+++|+|+.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45666666666666666666666666666554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.43  E-value=6.3e-07  Score=52.62  Aligned_cols=42  Identities=21%  Similarity=0.393  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      .+|..+|.+|..+|++++|+..|+++++.+|+|+.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456666677777777777777777777777777666666654

>KOG1174|consensus

Probab=98.41  E-value=1.9e-06  Score=73.01  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      .++..|+..|..++..++|..|+.+-.++|+.+|++..++...|.++..+|+..+|+-.|+.|+.+.|.....|-.+-.+
T Consensus       298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs  377 (564)
T KOG1174|consen  298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS  377 (564)
T ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            34667788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      |...|.+.+|...-+.+.+.-|.
T Consensus       378 YLA~~~~kEA~~~An~~~~~~~~  400 (564)
T KOG1174|consen  378 YLAQKRFKEANALANWTIRLFQN  400 (564)
T ss_pred             HHhhchHHHHHHHHHHHHHHhhc
Confidence            99999999988877777776654

>KOG1127|consensus

Probab=98.41  E-value=7.5e-07  Score=82.29  Aligned_cols=100  Identities=15%  Similarity=0.068  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL  193 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~  193 (231)
                      ..|..+|..+...+++..|+..|+-+++.+|++..+|..+|.+|...|+|..|+..|++|..++|.+.-+.+..+.....
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd  642 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD  642 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence            45566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCC
Q psy13481        194 LGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       194 ~g~~~~A~~~~~~al~l~p~  213 (231)
                      +|.|.+|+..+...+....+
T Consensus       643 ~GkYkeald~l~~ii~~~s~  662 (1238)
T KOG1127|consen  643 NGKYKEALDALGLIIYAFSL  662 (1238)
T ss_pred             hhhHHHHHHHHHHHHHHHHH
Confidence            99999999999988876543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.41  E-value=1.3e-05  Score=64.20  Aligned_cols=103  Identities=14%  Similarity=0.206  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA---AYKF  186 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~  186 (231)
                      +..|+..|...++.|+|.+|+..|+.+...+|.+   ..+...++.++++.++|+.|+..+++-+.++|.+++   +++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            6789999999999999999999999999998876   567888999999999999999999999999998865   7888


Q ss_pred             HHHHHHHcCC--------HHHHHHHHHHHHhcCCCHH
Q psy13481        187 RGRAYRLLGK--------WEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       187 lg~~~~~~g~--------~~~A~~~~~~al~l~p~~~  215 (231)
                      .|.+++..=+        -..|...|+..+...|+.+
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            8888765433        4568889999999999854

>KOG1174|consensus

Probab=98.40  E-value=1.6e-06  Score=73.52  Aligned_cols=63  Identities=16%  Similarity=0.076  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD  169 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~  169 (231)
                      +.++.+..++...|..+...++.++|+-.|+.|+.+.|...+.|..+-.+|+..|++.+|...
T Consensus       328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~  390 (564)
T KOG1174|consen  328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL  390 (564)
T ss_pred             ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence            345566788888889999999999999999999988888888888888888888875444333

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.39  E-value=3.7e-07  Score=50.45  Aligned_cols=33  Identities=33%  Similarity=0.527  Sum_probs=31.3

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q psy13481        135 AYSEAIKLNPSSALLYAKRGQSYLQLSKPNACI  167 (231)
Q Consensus       135 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai  167 (231)
                      +|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            488999999999999999999999999999986

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.38  E-value=2.6e-06  Score=70.85  Aligned_cols=97  Identities=13%  Similarity=-0.013  Sum_probs=48.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy13481        118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS--KPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG  195 (231)
Q Consensus       118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g  195 (231)
                      ....+++..++++.|...++.+-+.+.++.-....-|.+.+..|  ++.+|...|+...+..+.++..++.++.|+..+|
T Consensus       136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~  215 (290)
T PF04733_consen  136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG  215 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence            34445556666666666666655554443222222222223333  3556666666655555555555566666666666


Q ss_pred             CHHHHHHHHHHHHhcCCCH
Q psy13481        196 KWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       196 ~~~~A~~~~~~al~l~p~~  214 (231)
                      +|++|...+..++..+|.+
T Consensus       216 ~~~eAe~~L~~al~~~~~~  234 (290)
T PF04733_consen  216 HYEEAEELLEEALEKDPND  234 (290)
T ss_dssp             -HHHHHHHHHHHCCC-CCH
T ss_pred             CHHHHHHHHHHHHHhccCC
Confidence            6666666666666655553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3785|consensus

Probab=98.38  E-value=7.4e-06  Score=68.39  Aligned_cols=114  Identities=19%  Similarity=0.155  Sum_probs=78.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------------------
Q psy13481        106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP----------------------  163 (231)
Q Consensus       106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------------------  163 (231)
                      .++..+....|  .|..++..|+|++|+..|+-+...+.-.+..+.++|.|++-+|.|                      
T Consensus        52 ~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfh  129 (557)
T KOG3785|consen   52 DREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFH  129 (557)
T ss_pred             chhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence            33444444444  788999999999999999999987777788999999999998885                      


Q ss_pred             --------------------------------------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481        164 --------------------------------------NACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLR  205 (231)
Q Consensus       164 --------------------------------------~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  205 (231)
                                                            ++||..|.+++.-+|.....-..++.||+.+.-|+-+...+.
T Consensus       130 lahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~  209 (557)
T KOG3785|consen  130 LAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK  209 (557)
T ss_pred             HHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence                                                  445555555555555555555556666666666666666666


Q ss_pred             HHHhcCCCHHHHHHHH
Q psy13481        206 NACKIDFDEQADEWLK  221 (231)
Q Consensus       206 ~al~l~p~~~~~~~l~  221 (231)
                      -.++..||..+...++
T Consensus       210 vYL~q~pdStiA~NLk  225 (557)
T KOG3785|consen  210 VYLRQFPDSTIAKNLK  225 (557)
T ss_pred             HHHHhCCCcHHHHHHH
Confidence            6666666655443333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.37  E-value=7.7e-07  Score=49.03  Aligned_cols=31  Identities=29%  Similarity=0.539  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q psy13481        149 LYAKRGQSYLQLSKPNACIRDCSVALKINPD  179 (231)
Q Consensus       149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~  179 (231)
                      +|+++|.+|..+|+|++|+.+|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4444444444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.35  E-value=1.2e-06  Score=48.26  Aligned_cols=34  Identities=41%  Similarity=0.487  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      +.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK11906 transcriptional regulator; Provisional

Probab=98.34  E-value=6.2e-06  Score=71.30  Aligned_cols=107  Identities=9%  Similarity=-0.026  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      -++.++.+++..|..+...++++.|+..|++|+.++|+++.+|+.+|.+++..|+.++|+..+++++.++|.-..+-...
T Consensus       333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~  412 (458)
T PRK11906        333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK  412 (458)
T ss_pred             cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence            34556889999999999999999999999999999999999999999999999999999999999999999876654433


Q ss_pred             HHH-HHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        188 GRA-YRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       188 g~~-~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      -++ .+.-...+.|++.|-+-.+-..+.
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (458)
T PRK11906        413 ECVDMYVPNPLKNNIKLYYKETESESHR  440 (458)
T ss_pred             HHHHHHcCCchhhhHHHHhhccccccch
Confidence            334 556667888998887766555443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.34  E-value=6e-06  Score=67.61  Aligned_cols=72  Identities=22%  Similarity=0.187  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      ..+++.+|..++..|+|++|+..|..++..+|++   +.+++.+|.++..+|++++|+..|++++..+|++..+.
T Consensus       180 ~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        180 PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            5788999999999999999999999999998874   88999999999999999999999999999999987543

>KOG1127|consensus

Probab=98.33  E-value=2e-06  Score=79.60  Aligned_cols=110  Identities=16%  Similarity=0.219  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      +..+...+..+....+|+.|......+-+..|-.  ...|..+|..|.+.+++.+|+.+|+.++..+|.+.+.|..+|.+
T Consensus       526 aeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeA  605 (1238)
T KOG1127|consen  526 AEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEA  605 (1238)
T ss_pred             hhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            3334444455555555555555544433333322  23566788888889999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHh
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFDEQADEWLKE  222 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~  222 (231)
                      |...|+|.-|++.|.+|..++|.+...+....
T Consensus       606 Y~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A  637 (1238)
T KOG1127|consen  606 YPESGRYSHALKVFTKASLLRPLSKYGRFKEA  637 (1238)
T ss_pred             HHhcCceehHHHhhhhhHhcCcHhHHHHHHHH
Confidence            99999999999999999999998765554433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.31  E-value=6.1e-05  Score=61.08  Aligned_cols=103  Identities=18%  Similarity=0.178  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC------------------hHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSK------------------PNACIRD  169 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~------------------~~~Ai~~  169 (231)
                      ....+.+.+|..+++.++|++|+..|++.++.+|++   ..+++.+|.++..+++                  ...|+..
T Consensus        67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~  146 (243)
T PRK10866         67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD  146 (243)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH
Confidence            334567899999999999999999999999998877   6789999998766641                  2578899


Q ss_pred             HHHHHhhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        170 CSVALKINPDSAAA-----------------YKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       170 ~~~al~~~p~~~~~-----------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      |++.+...|++.-+                 -+..|..|...|.|..|+.-++.++.-.|+
T Consensus       147 ~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~  207 (243)
T PRK10866        147 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD  207 (243)
T ss_pred             HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC
Confidence            99999999987431                 124578899999999999999999999997

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.30  E-value=3.9e-06  Score=63.76  Aligned_cols=83  Identities=18%  Similarity=0.137  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------hHHH
Q psy13481        108 EDIDKSNEKKREAIHAYND----------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK-----------PNAC  166 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~----------~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------~~~A  166 (231)
                      .+|.+++.+..+|.++...          .-+++|+..|++||.++|+...+++++|.+|..++.           |++|
T Consensus        20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            4566788888898888755          345789999999999999999999999999998875           8899


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        167 IRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       167 i~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      ..+|++|.+.+|.|......|..+
T Consensus       100 ~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen  100 TEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHH
Confidence            999999999999998766665554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4234|consensus

Probab=98.30  E-value=6.8e-06  Score=63.51  Aligned_cols=78  Identities=24%  Similarity=0.317  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ....+..+|.++++.+.++.||....++|.++|.+-.++.+||.+|-++.+|+.|+.+|.+.++++|..-.+.-....
T Consensus       133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            345666788899999999999999999999999999999999999999999999999999999999987665544333

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.29  E-value=6.4e-06  Score=59.25  Aligned_cols=67  Identities=19%  Similarity=0.085  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+++++|.++-.+|+.++|+..|++++......   ..++..+|.++..+|++++|+..+++++...|++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence            578999999999999999999999999986554   4689999999999999999999999999998983

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.29  E-value=2.2e-06  Score=47.01  Aligned_cols=32  Identities=28%  Similarity=0.415  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q psy13481        148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPD  179 (231)
Q Consensus       148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~  179 (231)
                      .+|+.+|.+++.+|+|++|+.+|++++.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.26  E-value=3.4e-05  Score=66.58  Aligned_cols=104  Identities=17%  Similarity=0.157  Sum_probs=92.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy13481        123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAV  202 (231)
Q Consensus       123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  202 (231)
                      +...++++.|+..|++..+.+|+   +...++.++...++..+|+..+++++..+|.+...+...+..+...++++.|+.
T Consensus       179 l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  179 LSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             HhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            34568999999999999999885   556689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCH-HHHHHHHhhchhhhc
Q psy13481        203 DLRNACKIDFDE-QADEWLKEVTPNKLN  229 (231)
Q Consensus       203 ~~~~al~l~p~~-~~~~~l~~~~~~~~k  229 (231)
                      ..++++.+.|++ ..+..+.+++-.++.
T Consensus       256 iAk~av~lsP~~f~~W~~La~~Yi~~~d  283 (395)
T PF09295_consen  256 IAKKAVELSPSEFETWYQLAECYIQLGD  283 (395)
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence            999999999975 478888887766543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.26  E-value=2.2e-05  Score=70.15  Aligned_cols=99  Identities=16%  Similarity=0.076  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...++-+|..+-..|++++|+.+.++||...|+.+++|...|.++-+.|++.+|..+++.|-.+++.+--.....+..+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            45668889999999999999999999999999999999999999999999999999999999999999888889999999


Q ss_pred             HcCCHHHHHHHHHHHHhcC
Q psy13481        193 LLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~  211 (231)
                      ..|+.++|.+.+..-.+-+
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCC
Confidence            9999999999888765554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.25  E-value=9.5e-06  Score=67.28  Aligned_cols=104  Identities=20%  Similarity=0.163  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---
Q psy13481        110 IDKSNEKKREAIHAYND-GKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD---  179 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~-~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~---  179 (231)
                      ...+..+...|..+... |++++|+++|++|+.+....      ..++.+.|.++.++|+|.+|+..|+++....-.   
T Consensus       111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l  190 (282)
T PF14938_consen  111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL  190 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence            33467778888888888 99999999999999983321      567789999999999999999999999875422   


Q ss_pred             ---CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        180 ---SA-AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       180 ---~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                         +. ..++..+.|+..+|++..|...|.+....+|.
T Consensus       191 ~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~  228 (282)
T PF14938_consen  191 LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS  228 (282)
T ss_dssp             TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred             cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence               12 34567888999999999999999999999985

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.25  E-value=3.3e-06  Score=49.50  Aligned_cols=42  Identities=17%  Similarity=0.095  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQ  155 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~  155 (231)
                      ..+..+|..+...|++++|+..|+++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467889999999999999999999999999999999999885

>PRK15331 chaperone protein SicA; Provisional

Probab=98.24  E-value=6.3e-06  Score=61.96  Aligned_cols=76  Identities=4%  Similarity=-0.137  Sum_probs=69.9

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        139 AIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       139 al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      +..+.++..+..+..|.-++..|++.+|...|+-....+|.+++.|..||.|+..+|+|++|+..|..|..+++++
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d  104 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND  104 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence            3445666788899999999999999999999999999999999999999999999999999999999999998765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.21  E-value=4.7e-05  Score=63.34  Aligned_cols=98  Identities=20%  Similarity=0.080  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q psy13481        127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKW-EEAAVDLR  205 (231)
Q Consensus       127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~  205 (231)
                      +.+.+|...|++.....+.++..++.+|.+++.+|+|++|...+..++..+|.++.++.++..+...+|+. +.+.+.+.
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            36999999999998888889999999999999999999999999999999999999999999999999998 66778888


Q ss_pred             HHHhcCCCHHHHHHHHhhc
Q psy13481        206 NACKIDFDEQADEWLKEVT  224 (231)
Q Consensus       206 ~al~l~p~~~~~~~l~~~~  224 (231)
                      +....+|++....-+.+..
T Consensus       261 qL~~~~p~h~~~~~~~~~~  279 (290)
T PF04733_consen  261 QLKQSNPNHPLVKDLAEKE  279 (290)
T ss_dssp             HCHHHTTTSHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHH
Confidence            8888999876544444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0495|consensus

Probab=98.21  E-value=1.9e-05  Score=70.57  Aligned_cols=103  Identities=17%  Similarity=0.058  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...|+..+....-.++.++|+.+++++++..|+...+|..+|.++..+++.+.|...|...+...|...-.|..++..-.
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            46677777777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ..|+.-.|...|.++..-+|++.
T Consensus       731 k~~~~~rAR~ildrarlkNPk~~  753 (913)
T KOG0495|consen  731 KDGQLVRARSILDRARLKNPKNA  753 (913)
T ss_pred             HhcchhhHHHHHHHHHhcCCCcc
Confidence            99999999999999999999864

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.19  E-value=3.8e-06  Score=46.06  Aligned_cols=34  Identities=35%  Similarity=0.553  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      +.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1310|consensus

Probab=98.18  E-value=1.9e-05  Score=68.91  Aligned_cols=111  Identities=23%  Similarity=0.252  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS---KPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      +-+..+...+..|+..+-.+.+..|+..|.+++...|....++.++|.++++.+   +.-.|+.++..|+.+||...+++
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah  448 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH  448 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence            456778888999999999999999999999999999999999999999998865   67789999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHH
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADE  218 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  218 (231)
                      +.++.++..++++.+|+.+...+....|.+.+..
T Consensus       449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~  482 (758)
T KOG1310|consen  449 FRLARALNELTRYLEALSCHWALQMSFPTDVARQ  482 (758)
T ss_pred             HHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence            9999999999999999999998888888655443

>KOG0495|consensus

Probab=98.16  E-value=2.4e-05  Score=69.97  Aligned_cols=112  Identities=14%  Similarity=0.069  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481        115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL  194 (231)
Q Consensus       115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~  194 (231)
                      .|...-...+.+..++.|..+|.++....| ...+|+.-+.....+++.++|+..++.+++..|+..+.|..+|.++..+
T Consensus       620 iwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~  698 (913)
T KOG0495|consen  620 IWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQM  698 (913)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH
Confidence            333333444445555555555555555444 3456666677777788899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481        195 GKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       195 g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~  227 (231)
                      ++.+.|...|...++..|+.. .+-.+.++.++.
T Consensus       699 ~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  699 ENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence            999999999999999999854 666677666654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.12  E-value=2.9e-05  Score=57.14  Aligned_cols=71  Identities=28%  Similarity=0.488  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC---------------hHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSK---------------PNACIRDCSVAL  174 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~---------------~~~Ai~~~~~al  174 (231)
                      ..+...+|.+++..++|++|+..+++.|+++|++   .-+++.+|.+++....               ...|...|++++
T Consensus        47 ~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv  126 (142)
T PF13512_consen   47 EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLV  126 (142)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHH
Confidence            4566789999999999999999999999999987   5689999999999887               889999999999


Q ss_pred             hhCCCCHHH
Q psy13481        175 KINPDSAAA  183 (231)
Q Consensus       175 ~~~p~~~~~  183 (231)
                      ...|++.-+
T Consensus       127 ~~yP~S~ya  135 (142)
T PF13512_consen  127 RRYPNSEYA  135 (142)
T ss_pred             HHCcCChhH
Confidence            999998754

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.11  E-value=1.5e-05  Score=71.43  Aligned_cols=69  Identities=25%  Similarity=0.270  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA  182 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~  182 (231)
                      +..+..+|..+...|++++|...|++|+.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            35666778888889999999999999999999 5899999999999999999999999999999999874

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.07  E-value=1.4e-05  Score=66.26  Aligned_cols=105  Identities=19%  Similarity=0.217  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-  180 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~-  180 (231)
                      .-.+.+..+...|+.+...++|++|.+.|.++....-.      -+..|...|.++.+. ++.+|+.++++|+.+.-.. 
T Consensus        30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G  108 (282)
T PF14938_consen   30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG  108 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence            33444566666778888899999999999999876321      145666777777555 9999999999999885322 


Q ss_pred             -----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC
Q psy13481        181 -----AAAYKFRGRAYRLL-GKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       181 -----~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~  213 (231)
                           +.++..+|.+|... |+++.|+..|++|+.+.-.
T Consensus       109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~  147 (282)
T PF14938_consen  109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ  147 (282)
T ss_dssp             -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                 45889999999999 9999999999999998543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.04  E-value=0.00015  Score=64.92  Aligned_cols=103  Identities=16%  Similarity=0.074  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+...+.++...|++++|++++......-.+...+.-.+|.++.++|++++|...|...|..||+|...|..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            35566678889999999999999999988888889999999999999999999999999999999999999999998884


Q ss_pred             HcC-----CHHHHHHHHHHHHhcCCCHH
Q psy13481        193 LLG-----KWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       193 ~~g-----~~~~A~~~~~~al~l~p~~~  215 (231)
                      ...     +.+.-...|.......|...
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~  111 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSD  111 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCcccc
Confidence            443     45666777887777777643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.03  E-value=0.00017  Score=60.96  Aligned_cols=122  Identities=16%  Similarity=0.093  Sum_probs=98.9

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481        104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA  183 (231)
Q Consensus       104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~  183 (231)
                      .++.+...+.......+..+...|++++|.....++++..-+.. .+...+  ..+.+++..=++..++.+...|+++..
T Consensus       254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L  330 (400)
T COG3071         254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLL  330 (400)
T ss_pred             hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhH
Confidence            44555555566667788888999999999999999998865433 332222  357788899999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhh
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKL  228 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~  228 (231)
                      +.-+|..|+..+.|.+|..+|+.|++..|+.....++..+...+.
T Consensus       331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g  375 (400)
T COG3071         331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG  375 (400)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence            999999999999999999999999999999888888887776654

>KOG4555|consensus

Probab=98.03  E-value=6.9e-05  Score=54.15  Aligned_cols=63  Identities=29%  Similarity=0.348  Sum_probs=59.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        152 KRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       152 ~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .-|.++..-|+.+.|++.|.++|.+.|.++.+|++++.+++..|+.++|+.++.+|+++..+.
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            358888899999999999999999999999999999999999999999999999999997653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.96  E-value=0.00027  Score=54.46  Aligned_cols=109  Identities=18%  Similarity=0.135  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      .......|...+..+++++|+..++.++..-.+.   .-+-.++|.+.+..|.+++|+..+.....-+ -.+..-..+|.
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGD  167 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGD  167 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhh
Confidence            4566788999999999999999999998654332   4456788999999999999988876543311 12234567999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHh
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDEQADEWLKE  222 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~  222 (231)
                      ++...|+-++|+..|.+++..+++....++++-
T Consensus       168 ill~kg~k~~Ar~ay~kAl~~~~s~~~~~~lqm  200 (207)
T COG2976         168 ILLAKGDKQEARAAYEKALESDASPAAREILQM  200 (207)
T ss_pred             HHHHcCchHHHHHHHHHHHHccCChHHHHHHHh
Confidence            999999999999999999999977766666543

>KOG3785|consensus

Probab=97.95  E-value=3.5e-05  Score=64.45  Aligned_cols=86  Identities=13%  Similarity=0.113  Sum_probs=73.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy13481        122 HAYNDGKFEDAVNAYSEAIKLNPSS-ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA  200 (231)
Q Consensus       122 ~~~~~~~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  200 (231)
                      .+..+.+|..|+.+++-....+... ...-.++|.|++++|+|++|+..|+-+.+.+..++..+.+++.|++.+|.|.+|
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence            4567789999999999887665433 356667899999999999999999999998888899999999999999999999


Q ss_pred             HHHHHHH
Q psy13481        201 AVDLRNA  207 (231)
Q Consensus       201 ~~~~~~a  207 (231)
                      .....+|
T Consensus       111 ~~~~~ka  117 (557)
T KOG3785|consen  111 KSIAEKA  117 (557)
T ss_pred             HHHHhhC
Confidence            8876655

>PRK10941 hypothetical protein; Provisional

Probab=97.93  E-value=0.00014  Score=59.75  Aligned_cols=82  Identities=15%  Similarity=0.139  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchh
Q psy13481        147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN  226 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~  226 (231)
                      .....++=.+|.+.+++..|+.+.+..+.++|+++.-+.-+|.+|..+|.+..|..+++..++..|++.....++.-...
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~  260 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS  260 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            34566777788888888888888888888888888888888888888888888888888888888887766666655544


Q ss_pred             hh
Q psy13481        227 KL  228 (231)
Q Consensus       227 ~~  228 (231)
                      +.
T Consensus       261 l~  262 (269)
T PRK10941        261 IE  262 (269)
T ss_pred             Hh
Confidence            43

>KOG2376|consensus

Probab=97.89  E-value=0.00018  Score=63.59  Aligned_cols=91  Identities=21%  Similarity=0.195  Sum_probs=77.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------------------
Q psy13481        117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-------------------  177 (231)
Q Consensus       117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-------------------  177 (231)
                      +..|.++++.+..++|+..++   ..++.+..+...+|.+++++|+|++|+..|+..+.-+                   
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            689999999999999999999   4566667788889999999999999999998764433                   


Q ss_pred             -----------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        178 -----------PD-SAAAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       178 -----------p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                                 |. +...+||.+.++...|+|.+|++.+++|+++
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI  204 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence                       22 3457899999999999999999999999544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.86  E-value=3.1e-05  Score=42.38  Aligned_cols=30  Identities=30%  Similarity=0.447  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481        149 LYAKRGQSYLQLSKPNACIRDCSVALKINP  178 (231)
Q Consensus       149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p  178 (231)
                      +|+.+|.+|..+|++++|+..|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            444445555555555555555555554444

...

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.85  E-value=0.0017  Score=46.09  Aligned_cols=98  Identities=23%  Similarity=0.318  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS------------SALLYAKRGQSYLQLSKPNACIRDCSVALKI----  176 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~----  176 (231)
                      +......|...+..|-|++|...+++++....+            ++-++..++.++..+|+|++++....++|..    
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR   88 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR   88 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence            344445566778889999999999999987433            2567888999999999999988887777754    


Q ss_pred             ---CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        177 ---NPDSAA----AYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       177 ---~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                         +.+..+    +-++++.++..+|+.++|++.|+.+-++
T Consensus        89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence               444444    4578999999999999999999998664

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.001  Score=54.59  Aligned_cols=112  Identities=20%  Similarity=0.151  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH----------------------
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCS----------------------  171 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~----------------------  171 (231)
                      ...+..+......|++.+|...|..++...|++..+...++.||...|+.+.|...+.                      
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~  214 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence            4456678889999999999999999999999999999999999999999865544432                      


Q ss_pred             ------------HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---HHHHHHHHhhch
Q psy13481        172 ------------VALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD---EQADEWLKEVTP  225 (231)
Q Consensus       172 ------------~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~l~~~~~  225 (231)
                                  +.+..+|++..+-+.++..+...|+.+.|...+-..++.+-+   +...+.+.++..
T Consensus       215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~  283 (304)
T COG3118         215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE  283 (304)
T ss_pred             HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence                        445557999999999999999999999999999999988754   345555544443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.83  E-value=0.00016  Score=58.57  Aligned_cols=77  Identities=22%  Similarity=0.208  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      .-.+.++|.+|..++.+|+|+.|...|..+++-+|++   +++++.+|.+...+|+.++|-..|+++++..|....+..-
T Consensus       175 ~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         175 TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            4456888999999999999999999999999998876   7899999999999999999999999999999998876543

>KOG2053|consensus

Probab=97.82  E-value=0.00025  Score=65.43  Aligned_cols=94  Identities=18%  Similarity=0.251  Sum_probs=87.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481        122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA  201 (231)
Q Consensus       122 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  201 (231)
                      .....++|.+|+....+.++.+|+...+...-|.+++++|++++|..+++..-...+++-..+--+-.||..+|++++|.
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence            45677899999999999999999999999999999999999999998888888888888899999999999999999999


Q ss_pred             HHHHHHHhcCCCHH
Q psy13481        202 VDLRNACKIDFDEQ  215 (231)
Q Consensus       202 ~~~~~al~l~p~~~  215 (231)
                      ..|++++..+|...
T Consensus        98 ~~Ye~~~~~~P~ee  111 (932)
T KOG2053|consen   98 HLYERANQKYPSEE  111 (932)
T ss_pred             HHHHHHHhhCCcHH
Confidence            99999999999843

>KOG4648|consensus

Probab=97.80  E-value=2.3e-05  Score=65.30  Aligned_cols=64  Identities=23%  Similarity=0.263  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       150 ~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      .-.+|.-|++.|+|++||.+|.+++..+|.|+..+.+++.+|+.+..+..|..++..|+.++..
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~  163 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL  163 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            4568999999999999999999999999999999999999999999999999999999999843

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.78  E-value=4.5e-05  Score=41.73  Aligned_cols=33  Identities=33%  Similarity=0.495  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+|+.+|.+|..+|++++|...|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            579999999999999999999999999999853

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.76  E-value=9.5e-05  Score=58.01  Aligned_cols=69  Identities=25%  Similarity=0.308  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +..++.||..|-.+|=+.-|..+|.+++.++|.-+.+++.+|.-+...|+|+.|.+.|...+++||...
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            567888899999999999999999999999999999999999999999999999999999999999865

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.76  E-value=0.00039  Score=48.78  Aligned_cols=93  Identities=17%  Similarity=0.218  Sum_probs=79.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhCCCCHHHH
Q psy13481        119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSA---LLYAKRGQSYLQLSK-----------PNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      +|..++.+||+-+|++..+..+..++++.   ..+..-|.+++++..           .-.|+.+|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            56788999999999999999999998876   456666888877664           4578999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      +.+|.=+.....|++++.-.++++.+.
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            999988877888899998888888763

>KOG2796|consensus

Probab=97.75  E-value=0.00023  Score=57.40  Aligned_cols=106  Identities=14%  Similarity=0.126  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL----N--PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA  183 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~  183 (231)
                      +.+......+|...++-||.+.|..+|+..=+.    +  ........+.+.+|.-.++|..|...+.+++..+|.++.+
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            334556677899999999999999999954332    2  2335667788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .++.+.|+..+|+...|++.++.++.+.|...
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            99999999999999999999999999999854

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.75  E-value=0.0006  Score=56.51  Aligned_cols=100  Identities=13%  Similarity=-0.024  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481        116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL-SKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL  194 (231)
Q Consensus       116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~  194 (231)
                      |........+.+..+.|..+|.+|.+..+-...+|...|.+-+.. ++..-|...|+.++...|.+...|......+...
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            334444445555567777777777654444566666667765553 4444477777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHhcCCCHH
Q psy13481        195 GKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       195 g~~~~A~~~~~~al~l~p~~~  215 (231)
                      |+.+.|...|++++..-|.+.
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHH
T ss_pred             CcHHHHHHHHHHHHHhcCchh
Confidence            777777777777776655544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.74  E-value=0.00076  Score=51.53  Aligned_cols=92  Identities=33%  Similarity=0.423  Sum_probs=65.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCH
Q psy13481        122 HAYNDGKFEDAVNAYSEAIKLNP---SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD-SAAAYKFRGRAYRLLGKW  197 (231)
Q Consensus       122 ~~~~~~~~~~Ai~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~  197 (231)
                      .+...|++..|+..|.+++...|   .....+..++..+...+++..|+..+.+++...+. ....+..++.++...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            56677777777777777766665   34555666666666777777777777777777777 577777777777777777


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy13481        198 EEAAVDLRNACKIDFD  213 (231)
Q Consensus       198 ~~A~~~~~~al~l~p~  213 (231)
                      ..|...+..++...|.
T Consensus       219 ~~a~~~~~~~~~~~~~  234 (291)
T COG0457         219 EEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHHHHHhhCcc
Confidence            7777777777777765

>KOG1130|consensus

Probab=97.73  E-value=0.00013  Score=62.25  Aligned_cols=97  Identities=20%  Similarity=0.141  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLN------PSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN------PDSA  181 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------p~~~  181 (231)
                      .++.++|+.+.-.|+|+.|+++|+..+.+.      ...+...|.+|..|.-+++|..||.++.+-+.+.      ..-.
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~  315 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL  315 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            445567888888999999999999877652      1236778899999999999999999988766554      2345


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                      .+++.+|.+|-.+|..+.|+.+..+.+++
T Consensus       316 RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  316 RACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            68899999999999999999888877765

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.71  E-value=0.0016  Score=49.65  Aligned_cols=101  Identities=29%  Similarity=0.350  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      .......+..+...+++..|+..+.+++...+. ....+..++.++...+++..|+..+..++...|.....+..++..+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  246 (291)
T COG0457         167 AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLL  246 (291)
T ss_pred             HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHH
Confidence            344445555577889999999999999999999 7999999999999999999999999999999999888889999998


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ...|.++.+...+.+++...|.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         247 LELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcc
Confidence            8888899999999999999986

>KOG1915|consensus

Probab=97.66  E-value=0.0016  Score=56.63  Aligned_cols=112  Identities=14%  Similarity=0.020  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      .-....|...|.--.+++++..|...|++|+..+-.+..+|...+.+-++.+....|...+.+|+.+-|.--..|+..-.
T Consensus        70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y  149 (677)
T KOG1915|consen   70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            33456677777777889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDEQADEWLK  221 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~  221 (231)
                      +-..+|+...|...|++=+...|+..++...-
T Consensus       150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI  181 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFI  181 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            99999999999999999999999986554443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.64  E-value=0.00026  Score=43.11  Aligned_cols=32  Identities=19%  Similarity=0.183  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ++.++..++.+|+|..|..+...+++++|++.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~   35 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR   35 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence            34445555555555555555555555555433

>KOG1130|consensus

Probab=97.64  E-value=3.4e-05  Score=65.68  Aligned_cols=96  Identities=16%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CC--CHHH
Q psy13481        116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN----PD--SAAA  183 (231)
Q Consensus       116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~----p~--~~~~  183 (231)
                      +-.+|+.|+-.|+|+.||.+-+.-+.+....      -.++.++|.||.-+|+++.|+++|.+++.+.    ..  -+..
T Consensus       198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs  277 (639)
T KOG1130|consen  198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS  277 (639)
T ss_pred             hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence            3346667778899999999988888774433      4688999999999999999999999866543    33  3456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      .|.+|..|..+.+++.|+.++++-+.+.
T Consensus       278 cYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  278 CYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999887764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.63  E-value=0.0087  Score=44.99  Aligned_cols=112  Identities=13%  Similarity=-0.030  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+..........++.+++...+...--+.|+.+.+-..-|.+++..|+|.+|+..++.+....|..+.+--.++.|++
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            56777888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhch
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP  225 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~  225 (231)
                      .+|+.. -..+-..++.-.++..+....+.+..
T Consensus        90 ~~~D~~-Wr~~A~evle~~~d~~a~~Lv~~Ll~  121 (160)
T PF09613_consen   90 ALGDPS-WRRYADEVLESGADPDARALVRALLA  121 (160)
T ss_pred             HcCChH-HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            999842 33334556667767666666655543

>KOG2376|consensus

Probab=97.60  E-value=0.00068  Score=60.12  Aligned_cols=98  Identities=16%  Similarity=0.237  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS---SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      +++..+++..-.++.+.+.|++|+..    |+.++-   +....+..|.|++++++.++|+.+++   .+++.+......
T Consensus        43 pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L  115 (652)
T KOG2376|consen   43 PDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLEL  115 (652)
T ss_pred             CCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHH
Confidence            34456666677777888888888733    444442   22333688999999999999999987   666777889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .|.+++.+|+|++|++.|+...+-+-++
T Consensus       116 ~AQvlYrl~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen  116 RAQVLYRLERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence            9999999999999999999998887664

>PRK10941 hypothetical protein; Provisional

Probab=97.60  E-value=0.0015  Score=53.63  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ..+.++=..+.+.++|+.|+.+.+..+.+.|+++.-+.-||.+|.++|.+..|+.+++..++..|+++.+-.....+.
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            444555667899999999999999999999999999999999999999999999999999999999998766554443

>KOG4340|consensus

Probab=97.59  E-value=0.00021  Score=58.71  Aligned_cols=95  Identities=16%  Similarity=0.286  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CC-------
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN----PD-------  179 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~----p~-------  179 (231)
                      +++......|...++.|+|+.|+..|+.+++..-..+..-+++|.++++.++|..|+......++..    |.       
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t  221 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTT  221 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence            3467788899999999999999999999999999999999999999999999999999988887764    22       


Q ss_pred             ---------C---------HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481        180 ---------S---------AAAYKFRGRAYRLLGKWEEAAVDLR  205 (231)
Q Consensus       180 ---------~---------~~~~~~lg~~~~~~g~~~~A~~~~~  205 (231)
                               |         ..+++..+.+++..|+++.|.+.+.
T Consensus       222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                     1         1256667788999999999888764

>KOG4642|consensus

Probab=97.57  E-value=0.00014  Score=57.76  Aligned_cols=63  Identities=27%  Similarity=0.331  Sum_probs=59.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        152 KRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       152 ~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .-|..++.-++|..||.+|.++|-++|..+..|.+++.||..+.+|+.+..+.++|+.++|+.
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~   77 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL   77 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH
Confidence            347778888899999999999999999999999999999999999999999999999999974

>KOG3081|consensus

Probab=97.56  E-value=0.0025  Score=51.54  Aligned_cols=95  Identities=19%  Similarity=0.111  Sum_probs=64.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHH
Q psy13481        127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA-VDLR  205 (231)
Q Consensus       127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~  205 (231)
                      +.+..|.-+|++.-...|-.+...+..|.|++.+|||++|...++.++..++.++.++.|+-.+-..+|.-.++. +.+.
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~  266 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS  266 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            456777777777777666667777777777777777777777777777777777777777777777777654444 4455


Q ss_pred             HHHhcCCCHHHHHHHH
Q psy13481        206 NACKIDFDEQADEWLK  221 (231)
Q Consensus       206 ~al~l~p~~~~~~~l~  221 (231)
                      +....+|.+..-..+.
T Consensus       267 QLk~~~p~h~~vk~~~  282 (299)
T KOG3081|consen  267 QLKLSHPEHPFVKHLN  282 (299)
T ss_pred             HHHhcCCcchHHHHHH
Confidence            5555566654333333

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.52  E-value=0.0039  Score=60.56  Aligned_cols=95  Identities=11%  Similarity=0.104  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHH
Q psy13481        115 EKKREAIHAYNDGKFEDAVNAYSEAIK----LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-PDSAAAYKFRGR  189 (231)
Q Consensus       115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-p~~~~~~~~lg~  189 (231)
                      .+..+...+.+.|++++|...|.+...    +.| +...|..+-.+|.+.|++++|+..|+...+.+ +.+...|..+..
T Consensus       544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~  622 (1060)
T PLN03218        544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN  622 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence            344445555556666666666665544    233 24455555556666666666666666666555 334556666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhc
Q psy13481        190 AYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l  210 (231)
                      .|...|++++|...|......
T Consensus       623 ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        623 SCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHhcCCHHHHHHHHHHHHHc
Confidence            666666666666666665544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.46  E-value=0.014  Score=47.14  Aligned_cols=114  Identities=20%  Similarity=0.193  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhhCCCCH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSK--------PNACIRDCSVALKINPDSA  181 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~--------~~~Ai~~~~~al~~~p~~~  181 (231)
                      -.+...++..+++.++|+.|+...++.++++|++   .-+++.+|.+++..=+        -..|+..|+..+...|++.
T Consensus        71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105          71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            4567789999999999999999999999998877   4567788888776543        4678999999999999853


Q ss_pred             H---------------HH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCH----HHHHHHHhhchh
Q psy13481        182 A---------------AY--KFRGRAYRLLGKWEEAAVDLRNACKIDFDE----QADEWLKEVTPN  226 (231)
Q Consensus       182 ~---------------~~--~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~l~~~~~~  226 (231)
                      -               +.  ...|..|...|.|..|+.-++..++-.|+.    ++..++.+....
T Consensus       151 Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~  216 (254)
T COG4105         151 YAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA  216 (254)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence            2               11  235788999999999999999999998873    345555554443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.46  E-value=0.0008  Score=40.92  Aligned_cols=43  Identities=19%  Similarity=0.191  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      +.++.+|..++++|+|..|...++.++++.|+|..+......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4677888999999999999999999999999988876655444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.46  E-value=0.0016  Score=48.18  Aligned_cols=63  Identities=16%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK  175 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~  175 (231)
                      ...+..++..+...|++++|+..+++++..+|.+-.+|..+-.+|...|++..|+..|+++..
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            456667778889999999999999999999999999999999999999999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.45  E-value=0.0011  Score=61.88  Aligned_cols=94  Identities=13%  Similarity=0.064  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481        115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL  194 (231)
Q Consensus       115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~  194 (231)
                      .+......+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.+.+.|.+...|..++.+|...
T Consensus       464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~  541 (697)
T PLN03081        464 HYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS  541 (697)
T ss_pred             chHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence            3445566777888888888887764 2344 4567888888888999999999999999999999888899999999999


Q ss_pred             CCHHHHHHHHHHHHhc
Q psy13481        195 GKWEEAAVDLRNACKI  210 (231)
Q Consensus       195 g~~~~A~~~~~~al~l  210 (231)
                      |+|++|.+.++...+.
T Consensus       542 G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        542 GRQAEAAKVVETLKRK  557 (697)
T ss_pred             CCHHHHHHHHHHHHHc
Confidence            9999999998877654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.45  E-value=0.00028  Score=38.00  Aligned_cols=28  Identities=18%  Similarity=0.261  Sum_probs=11.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481        151 AKRGQSYLQLSKPNACIRDCSVALKINP  178 (231)
Q Consensus       151 ~~la~~~~~~~~~~~Ai~~~~~al~~~p  178 (231)
                      +++|.++.+.|++++|+..|++++...|
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            3334444444444444444444443333

>KOG2471|consensus

Probab=97.42  E-value=0.00026  Score=61.54  Aligned_cols=113  Identities=19%  Similarity=0.075  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-h----
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEA-IKLNPS--------SALLYAKRGQSYLQLSKPNACIRDCSVALK-I----  176 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~a-l~~~p~--------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~-~----  176 (231)
                      +.+..++..+...+..|+|.+|...+... |...|.        ...+|+|+|.++++++.|.-++..|.+|+. .    
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            34567778888999999999999887653 222333        345789999999999999999999999996 1    


Q ss_pred             ----CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        177 ----NP---------DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       177 ----~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                          .|         .....+|+.|..|...|+.-.|..+|.+++.....+. .|-.+.++
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc  378 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC  378 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence                11         2345889999999999999999999999999876554 45444444

>KOG3824|consensus

Probab=97.42  E-value=0.0009  Score=55.24  Aligned_cols=85  Identities=21%  Similarity=0.248  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      +.....+......|....+.|+.++|..+|.-|+++.|+++.++...|...-..++.-+|-.+|-+|+.+.|.|.+++.+
T Consensus       110 pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn  189 (472)
T KOG3824|consen  110 PAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN  189 (472)
T ss_pred             chhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence            34445566666778888999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHH
Q psy13481        187 RGRAY  191 (231)
Q Consensus       187 lg~~~  191 (231)
                      ++...
T Consensus       190 R~RT~  194 (472)
T KOG3824|consen  190 RARTT  194 (472)
T ss_pred             hhccc
Confidence            87653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.41  E-value=0.0017  Score=57.80  Aligned_cols=88  Identities=22%  Similarity=0.154  Sum_probs=76.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHH
Q psy13481        126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD----SAAAYKFRGRAYRLLGKWEEAA  201 (231)
Q Consensus       126 ~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~  201 (231)
                      ..+...|...+....+..|+++-..+..|.++...|+.+.|+..|++++.....    +.-.++.+|+++..+++|++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            567788999999999999999999999999999999999999999998854332    2347789999999999999999


Q ss_pred             HHHHHHHhcCCC
Q psy13481        202 VDLRNACKIDFD  213 (231)
Q Consensus       202 ~~~~~al~l~p~  213 (231)
                      .+|.+.++.+.-
T Consensus       326 ~~f~~L~~~s~W  337 (468)
T PF10300_consen  326 EYFLRLLKESKW  337 (468)
T ss_pred             HHHHHHHhcccc
Confidence            999999987643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.40  E-value=0.0023  Score=54.26  Aligned_cols=86  Identities=28%  Similarity=0.270  Sum_probs=78.7

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481        124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVD  203 (231)
Q Consensus       124 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  203 (231)
                      ..-+++..=+...++.++.+|+++.++.-+|..+++.+.|.+|-..|+.++...| +...|..+|.++..+|+...|...
T Consensus       305 l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~  383 (400)
T COG3071         305 LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQV  383 (400)
T ss_pred             cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHH
Confidence            4558888899999999999999999999999999999999999999999999886 455778899999999999999999


Q ss_pred             HHHHHhc
Q psy13481        204 LRNACKI  210 (231)
Q Consensus       204 ~~~al~l  210 (231)
                      ++.++.+
T Consensus       384 r~e~L~~  390 (400)
T COG3071         384 RREALLL  390 (400)
T ss_pred             HHHHHHH
Confidence            9999854

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.39  E-value=0.0048  Score=51.11  Aligned_cols=102  Identities=14%  Similarity=0.060  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHHHH
Q psy13481        114 NEKKREAIHAYN-DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA---AAYKFRGR  189 (231)
Q Consensus       114 ~~~~~~a~~~~~-~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~lg~  189 (231)
                      ..|...|..-+. .++...|...|+.+++..|.+..+|......+..+++...|...|++++..-+...   ..|.....
T Consensus        36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~  115 (280)
T PF05843_consen   36 HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIE  115 (280)
T ss_dssp             HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            445566666445 67777799999999999999999999999999999999999999999999887655   57888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .-...|+.+...+...++..+.|++.
T Consensus       116 fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen  116 FESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            88899999999999999999998743

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.35  E-value=0.0097  Score=57.93  Aligned_cols=94  Identities=9%  Similarity=0.018  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHH
Q psy13481        116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPS-SALLYAKRGQSYLQLSKPNACIRDCSVALKINP-DSAAAYKFRGRAYRL  193 (231)
Q Consensus       116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p-~~~~~~~~lg~~~~~  193 (231)
                      +..+...+.+.|++++|...|.+....... +...|..+...|.+.|++++|+..|.......- -+...|..+..+|..
T Consensus       475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k  554 (1060)
T PLN03218        475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ  554 (1060)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            333444455556666666666555544221 455566666666666666666666665544331 234455556666666


Q ss_pred             cCCHHHHHHHHHHHHh
Q psy13481        194 LGKWEEAAVDLRNACK  209 (231)
Q Consensus       194 ~g~~~~A~~~~~~al~  209 (231)
                      .|++++|...|.....
T Consensus       555 ~G~~deA~~lf~eM~~  570 (1060)
T PLN03218        555 SGAVDRAFDVLAEMKA  570 (1060)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            6666666666665543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.35  E-value=0.00031  Score=37.82  Aligned_cols=33  Identities=27%  Similarity=0.236  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+++.+|.++..+|++++|+..|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            378999999999999999999999999999973

>PLN03077 Protein ECB2; Provisional

Probab=97.30  E-value=0.0038  Score=59.69  Aligned_cols=94  Identities=15%  Similarity=0.164  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL  193 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~  193 (231)
                      ..+......+.+.|++++|.+.+++. ...|+ ...|..+-.++...++.+.+....++++++.|++...|..++.+|..
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~  703 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD  703 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence            34555666677778888888877764 34553 56666666666777778888888888888889888888888999999


Q ss_pred             cCCHHHHHHHHHHHHh
Q psy13481        194 LGKWEEAAVDLRNACK  209 (231)
Q Consensus       194 ~g~~~~A~~~~~~al~  209 (231)
                      .|+|++|.+..+....
T Consensus       704 ~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        704 AGKWDEVARVRKTMRE  719 (857)
T ss_pred             CCChHHHHHHHHHHHH
Confidence            9999988888776654

>KOG1586|consensus

Probab=97.29  E-value=0.0042  Score=49.42  Aligned_cols=103  Identities=15%  Similarity=0.100  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC-----
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA------LLYAKRGQSYLQL-SKPNACIRDCSVALKINPDS-----  180 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~------~~~~~la~~~~~~-~~~~~Ai~~~~~al~~~p~~-----  180 (231)
                      +..-+..+...++..+..+|+.+++++|++.-+-.      ..+..+|.+|-.- .++.+||.+|+++-+.....     
T Consensus        73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss  152 (288)
T KOG1586|consen   73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS  152 (288)
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence            33444455555666788888888888887755443      2334667777554 67888888888877665321     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        181 -AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       181 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                       .+.+...+..-..+++|.+|+..|++.....-++.
T Consensus       153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence             23445555566677788888888877766555544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.28  E-value=0.00055  Score=38.06  Aligned_cols=28  Identities=32%  Similarity=0.418  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                      +|.++|.+|..+|+|++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4677888888888888888888886544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.28  E-value=0.013  Score=45.24  Aligned_cols=116  Identities=16%  Similarity=0.139  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      ...+..+++..+..+++..|...++...+.+|.  +++....+|.++...|++.+|...|+.++...|. +.+....+..
T Consensus       124 ~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~  202 (251)
T COG4700         124 AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEM  202 (251)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence            567788999999999999999999999999885  3667777899999999999999999999999975 5566778999


Q ss_pred             HHHcCCHHHHHHHH----HHHHhcCCC--HHHHHHHHhhchhhhc
Q psy13481        191 YRLLGKWEEAAVDL----RNACKIDFD--EQADEWLKEVTPNKLN  229 (231)
Q Consensus       191 ~~~~g~~~~A~~~~----~~al~l~p~--~~~~~~l~~~~~~~~k  229 (231)
                      +..+|+..+|..-+    ..+.+-.|+  +....|++.....+++
T Consensus       203 La~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~~~~~q  247 (251)
T COG4700         203 LAKQGRLREANAQYVAVVDTAKRSRPHYRKHHREWIKTANERLKQ  247 (251)
T ss_pred             HHHhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence            99999887776544    444444554  4467888877665544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.28  E-value=0.00064  Score=37.79  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481        149 LYAKRGQSYLQLSKPNACIRDCSVALKI  176 (231)
Q Consensus       149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~  176 (231)
                      +|.++|.+|.++|+|++|+..|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4778899999999999999999996644

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.27  E-value=0.0047  Score=42.06  Aligned_cols=74  Identities=18%  Similarity=0.152  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481        132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS--AAAYKFRGRAYRLLGKWEEAAVDLR  205 (231)
Q Consensus       132 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~  205 (231)
                      .+..+++.++.+|++..+.+.+|..+...|++++|+..+-.++..++.+  ..+...+-.++..+|.-+.-...|+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R   82 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR   82 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence            3566778888888888888888888888888888888888888887755  4455555556666665443333333

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.27  E-value=0.0025  Score=56.69  Aligned_cols=102  Identities=17%  Similarity=0.069  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS----SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-AAY  184 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~  184 (231)
                      |+.+-.++..|..+...|+.++|++.|++++.....    ..-+++.+|-++.-+.+|.+|..++.+.++.+.-+. -..
T Consensus       264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~  343 (468)
T PF10300_consen  264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA  343 (468)
T ss_pred             CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence            555777888999999999999999999999853222    245788999999999999999999999999775432 344


Q ss_pred             HHHHHHHHHcCCH-------HHHHHHHHHHHhcC
Q psy13481        185 KFRGRAYRLLGKW-------EEAAVDLRNACKID  211 (231)
Q Consensus       185 ~~lg~~~~~~g~~-------~~A~~~~~~al~l~  211 (231)
                      |..|.|+..+|+.       ++|...|.++-.+-
T Consensus       344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            7789999999999       88888887775543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>smart00028 TPR Tetratricopeptide repeats

Probab=97.26  E-value=0.00049  Score=35.90  Aligned_cols=30  Identities=23%  Similarity=0.445  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481        149 LYAKRGQSYLQLSKPNACIRDCSVALKINP  178 (231)
Q Consensus       149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p  178 (231)
                      +|+++|.++..++++..|+.++++++.++|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344455555555555555555555554444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.26  E-value=0.0029  Score=59.02  Aligned_cols=98  Identities=9%  Similarity=-0.001  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH-----------------------------------H
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL--NPSSALLYAKRG-----------------------------------Q  155 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~la-----------------------------------~  155 (231)
                      ...|..+...+.+.|++++|+..|++....  .| +...|..+.                                   .
T Consensus       290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~  368 (697)
T PLN03081        290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD  368 (697)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence            455666666666667777777766666543  23 233344444                                   4


Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCH
Q psy13481        156 SYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK--IDFDE  214 (231)
Q Consensus       156 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~  214 (231)
                      .|.+.|++++|...|++..+   .+...|..+...|...|+.++|+..|++...  +.|+.
T Consensus       369 ~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~  426 (697)
T PLN03081        369 LYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH  426 (697)
T ss_pred             HHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence            44444444444444444322   2444566666666666666666666666554  34553

>KOG0551|consensus

Probab=97.25  E-value=0.0027  Score=52.91  Aligned_cols=70  Identities=21%  Similarity=0.353  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA  181 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~  181 (231)
                      .+..+.++|.+.+-.|+|..|+....+++.++|.+..++++-|.|++.++++..|+.+|+..+.++-..-
T Consensus       118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            3567788898999999999999999999999999999999999999999999999999999988875443

>KOG0376|consensus

Probab=97.21  E-value=0.00012  Score=63.32  Aligned_cols=90  Identities=19%  Similarity=0.250  Sum_probs=78.9

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      ..+.+++.+..+-.++.++.+.++|..|+.-+.+||+.+|....+|+.+|.++..+++|.+|+.+|+....+.|+.+.+.
T Consensus        30 aI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~  109 (476)
T KOG0376|consen   30 AIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDAT  109 (476)
T ss_pred             HHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHH
Confidence            34445555666667888899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHc
Q psy13481        185 KFRGRAYRLL  194 (231)
Q Consensus       185 ~~lg~~~~~~  194 (231)
                      ..+..|-...
T Consensus       110 r~~~Ec~~~v  119 (476)
T KOG0376|consen  110 RKIDECNKIV  119 (476)
T ss_pred             HHHHHHHHHH
Confidence            8777765443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.19  E-value=0.0058  Score=58.56  Aligned_cols=99  Identities=8%  Similarity=0.034  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD-------  179 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~-------  179 (231)
                      ...+...|..+...|++++|...+.+++......      ..++.++|.+++..|++.+|...+++++.+...       
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  570 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP  570 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            3455677888888999999999999998763321      345677899999999999999999988876321       


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        180 -SAAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       180 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                       ....+..+|.++...|++++|...+.+++.+.
T Consensus       571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence             12345677888888999999999988887753

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.19  E-value=0.0075  Score=57.84  Aligned_cols=97  Identities=13%  Similarity=0.006  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS------AA  182 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~~  182 (231)
                      ......|..++..|++++|...+++++...+..     ..++..+|.++...|++.+|...+++++......      ..
T Consensus       453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~  532 (903)
T PRK04841        453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW  532 (903)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            344457888899999999999999999865543     2456788999999999999999999999765421      24


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                      ++.++|.++...|+++.|...+++++.+
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            6678899999999999999999999886

>KOG4507|consensus

Probab=97.16  E-value=0.00086  Score=59.63  Aligned_cols=99  Identities=19%  Similarity=0.174  Sum_probs=87.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481        125 NDGKFEDAVNAYSEAIKLNPSS-ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVD  203 (231)
Q Consensus       125 ~~~~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  203 (231)
                      ..|+...|+.++..|+...|.. .....++|.++++-|-.-.|...+.+++.++..-+-.++.+|.++..+.+.+.|++.
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence            4599999999999999998854 456889999999999999999999999999988888999999999999999999999


Q ss_pred             HHHHHhcCCCHH-HHHHHHhh
Q psy13481        204 LRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       204 ~~~al~l~p~~~-~~~~l~~~  223 (231)
                      |+.|++++|++. ...-++.+
T Consensus       699 ~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  699 FRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HHHHHhcCCCChhhHHHHHHH
Confidence            999999999864 44444443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.15  E-value=0.0067  Score=52.13  Aligned_cols=96  Identities=20%  Similarity=0.296  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNP--------SS----------ALLYAKRGQSYLQLSKPNACIRDCSVALK  175 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p--------~~----------~~~~~~la~~~~~~~~~~~Ai~~~~~al~  175 (231)
                      .+...-|...+++++|..|..-|.-++++..        ..          .-....+..||+++++.+.|+.+..+.|.
T Consensus       177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~  256 (569)
T PF15015_consen  177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN  256 (569)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence            3444455666777777777777777776521        11          22345789999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481        176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK  209 (231)
Q Consensus       176 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  209 (231)
                      +||.++.-+...+.|++.+.+|.+|...+--+.-
T Consensus       257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887665543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.14  E-value=0.056  Score=40.12  Aligned_cols=110  Identities=14%  Similarity=-0.003  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+...........++.++...+...--+.|+.+.+...-|.++...|+|.+|+..++...+-.+..+.+.-.++.|++
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            45566666677779999999999999888999999999999999999999999999999999999888988899999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQADEWLKEV  223 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~  223 (231)
                      .+|+.. -..+-..++.-+++.++....+.+
T Consensus        90 al~Dp~-Wr~~A~~~le~~~~~~a~~Lv~al  119 (153)
T TIGR02561        90 AKGDAE-WHVHADEVLARDADADAVALVRAL  119 (153)
T ss_pred             hcCChH-HHHHHHHHHHhCCCHhHHHHHHHH
Confidence            999842 233334455566665555555443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1585|consensus

Probab=97.13  E-value=0.012  Score=47.16  Aligned_cols=100  Identities=21%  Similarity=0.091  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCCH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN-----PDSA  181 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-----p~~~  181 (231)
                      +..+...+..+...++|++|...+.+|++-..++      +.++-..|.....+..+.++...+++|..+.     |+.+
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            4455555666777899999999999999765555      3455567888888999999999999999886     3333


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      ..-...+-=.....+.+.|+..|++++.+.-
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve  141 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVE  141 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence            3333344445566789999999999998754

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.11  E-value=0.00086  Score=53.07  Aligned_cols=61  Identities=20%  Similarity=0.284  Sum_probs=51.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481        121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA  181 (231)
Q Consensus       121 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~  181 (231)
                      ......++.+.|.+.|++++.+-|.....|+++|....+.|++..|...|++.++++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3456778888888888888888888888888888888888888888888888888888654

>smart00028 TPR Tetratricopeptide repeats

Probab=97.11  E-value=0.0008  Score=35.04  Aligned_cols=32  Identities=31%  Similarity=0.366  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      .+++.+|.++..+|+++.|...|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            47889999999999999999999999999885

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0545|consensus

Probab=97.08  E-value=0.0031  Score=50.53  Aligned_cols=75  Identities=13%  Similarity=0.175  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA  183 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~  183 (231)
                      +.-....+.+...+++..|+|-+++++....+..+|.+..+|+.||.++...=+..+|..+|.++++++|.-..+
T Consensus       226 dk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  226 DKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            344456677788889999999999999999999999999999999999999999999999999999999976543

>KOG2610|consensus

Probab=97.08  E-value=0.0052  Score=51.44  Aligned_cols=96  Identities=14%  Similarity=0.040  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL-NPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      |.+..+++.--..++-+|+...-...+++.+-. +++.   .-+...++-++...|-|.+|.....+++++|+.+..+.+
T Consensus       134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H  213 (491)
T KOG2610|consen  134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH  213 (491)
T ss_pred             chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence            333334443344444445555555555544444 3333   222223344445555555555555555555555555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHH
Q psy13481        186 FRGRAYRLLGKWEEAAVDLR  205 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~  205 (231)
                      -.+.++...|++.++.++..
T Consensus       214 a~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  214 AKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             HHHHHHHhcchhhhHHHHHH
Confidence            55555555555555554443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.07  E-value=0.00099  Score=52.75  Aligned_cols=61  Identities=18%  Similarity=0.235  Sum_probs=57.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        155 QSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       155 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ....+.++.+.|.+.|++++.+.|.+...|+.+|......|+++.|.+.|++.++++|++.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            4556788999999999999999999999999999999999999999999999999999764

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.07  E-value=0.015  Score=51.10  Aligned_cols=101  Identities=17%  Similarity=0.140  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQLSKPNACIRDCSVALKIN-PDSAAAYKFRGRA  190 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-p~~~~~~~~lg~~  190 (231)
                      .....+|+.+.+.|+.++|++.|+..++.+|.  +..++.++..+++.+++|.++...+.+.=++. |.++...|..+..
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            33456777777888888888888888887765  45678888888888888888877776653332 4455544444443


Q ss_pred             HHH-cCC---------------HHHHHHHHHHHHhcCCCH
Q psy13481        191 YRL-LGK---------------WEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       191 ~~~-~g~---------------~~~A~~~~~~al~l~p~~  214 (231)
                      ... .|+               -..|++++.+|++.+|+-
T Consensus       340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV  379 (539)
T PF04184_consen  340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV  379 (539)
T ss_pred             HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence            222 121               234667888888888874

The molecular function of this protein is uncertain.

>KOG4340|consensus

Probab=97.02  E-value=0.0051  Score=50.74  Aligned_cols=85  Identities=12%  Similarity=0.123  Sum_probs=76.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy13481        123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAV  202 (231)
Q Consensus       123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  202 (231)
                      +.+..+|..||+++.--.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|......+..+..++..+.+..|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            46678999999999999999999999999999999999999999999999999999988888888899999999888887


Q ss_pred             HHHHH
Q psy13481        203 DLRNA  207 (231)
Q Consensus       203 ~~~~a  207 (231)
                      .....
T Consensus       100 V~~~~  104 (459)
T KOG4340|consen  100 VAFLL  104 (459)
T ss_pred             HHHHh
Confidence            65544

>KOG2610|consensus

Probab=97.00  E-value=0.011  Score=49.67  Aligned_cols=99  Identities=12%  Similarity=0.079  Sum_probs=86.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHH
Q psy13481        117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI-NPDS---AAAYKFRGRAYR  192 (231)
Q Consensus       117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~-~p~~---~~~~~~lg~~~~  192 (231)
                      ...+..++.+|++.+|...+++.+.-.|.+.-++..--.+++.+|+.......+++.+-. |++-   ..+.-.++.++.
T Consensus       107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~  186 (491)
T KOG2610|consen  107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE  186 (491)
T ss_pred             hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence            344556778899999999999999999999999999999999999999999999999988 6655   445566788999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ..|-|++|.+.-.+++++++.+.
T Consensus       187 E~g~y~dAEk~A~ralqiN~~D~  209 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQINRFDC  209 (491)
T ss_pred             HhccchhHHHHHHhhccCCCcch
Confidence            99999999999999999999753

>KOG2471|consensus

Probab=96.98  E-value=0.0013  Score=57.47  Aligned_cols=83  Identities=11%  Similarity=0.083  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL------------------NPSSALLYAKRGQSYLQLSKPNACIRDCSVAL  174 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al  174 (231)
                      ...|.++|.+++..|.|.-++.+|.+|++-                  ...+....||.|..|+..|++-.|.++|.++.
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av  362 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV  362 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence            455678899999999999999999999961                  12347889999999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHcC
Q psy13481        175 KINPDSAAAYKFRGRAYRLLG  195 (231)
Q Consensus       175 ~~~p~~~~~~~~lg~~~~~~g  195 (231)
                      ...-.++..|..++.|+....
T Consensus       363 ~vfh~nPrlWLRlAEcCima~  383 (696)
T KOG2471|consen  363 HVFHRNPRLWLRLAECCIMAL  383 (696)
T ss_pred             HHHhcCcHHHHHHHHHHHHHh
Confidence            999999999999999987643

>KOG2396|consensus

Probab=96.97  E-value=0.01  Score=52.03  Aligned_cols=84  Identities=11%  Similarity=0.029  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q psy13481        132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK-WEEAAVDLRNACKI  210 (231)
Q Consensus       132 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l  210 (231)
                      -+..|+.|+...+.+...|.+......+.+.|.+--..|.+++..+|+++..|..-+.-.+..+. .+.|...|.++++.
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            34567777777777777777777666666667777777777777777777777777766666664 77777777777777


Q ss_pred             CCCHH
Q psy13481        211 DFDEQ  215 (231)
Q Consensus       211 ~p~~~  215 (231)
                      +|+.+
T Consensus       170 npdsp  174 (568)
T KOG2396|consen  170 NPDSP  174 (568)
T ss_pred             CCCCh
Confidence            77754

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.97  E-value=0.0073  Score=41.08  Aligned_cols=63  Identities=27%  Similarity=0.219  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---HHHHHHHHhhchhh
Q psy13481        165 ACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD---EQADEWLKEVTPNK  227 (231)
Q Consensus       165 ~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~l~~~~~~~  227 (231)
                      ..+..+++.+..+|++..+.+.+|..+...|++++|+..+..+++.+++   +.+...+..+...+
T Consensus         6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l   71 (90)
T PF14561_consen    6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL   71 (90)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence            3577889999999999999999999999999999999999999999876   34666666665543

>KOG3081|consensus

Probab=96.93  E-value=0.018  Score=46.71  Aligned_cols=94  Identities=15%  Similarity=0.140  Sum_probs=73.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481        119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL----SKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL  194 (231)
Q Consensus       119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~  194 (231)
                      .-.++.+..+++-|...+++...++.  -..+..+|.+|.++    +++..|.-.|+..-+..|..+..+...+.|+..+
T Consensus       143 ~VqI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~  220 (299)
T KOG3081|consen  143 NVQILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh
Confidence            33455566666666666666666543  34555566666553    4688999999999998889999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCH
Q psy13481        195 GKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       195 g~~~~A~~~~~~al~l~p~~  214 (231)
                      |+|++|...++.++.-++++
T Consensus       221 ~~~eeAe~lL~eaL~kd~~d  240 (299)
T KOG3081|consen  221 GRYEEAESLLEEALDKDAKD  240 (299)
T ss_pred             cCHHHHHHHHHHHHhccCCC
Confidence            99999999999999998875

>KOG1941|consensus

Probab=96.88  E-value=0.0034  Score=53.03  Aligned_cols=98  Identities=16%  Similarity=0.157  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--------  179 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--------  179 (231)
                      ......|+.+...+-|+++++.|+.|++..-++      ..++..+|..+-.+++|++|+.+..+|.++-..        
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            344458888889999999999999999884433      357889999999999999999999999887532        


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        180 --SAAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       180 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                        ...+++.++.+++.+|....|.++...+.++.
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence              12367889999999999999999998887763

>KOG2053|consensus

Probab=96.85  E-value=0.012  Score=54.66  Aligned_cols=108  Identities=14%  Similarity=0.050  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ...|+...+....|..+++.|+.++|..+++..-...+++...+--+-.||..++++++|+..|++++..+|. -..++.
T Consensus        37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~  115 (932)
T KOG2053|consen   37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYH  115 (932)
T ss_pred             HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHH
Confidence            3455566677778899999999999998888877788888899999999999999999999999999999999 888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +-.+|..-+.|.+-.+.--+..+..|.+.
T Consensus       116 lFmayvR~~~yk~qQkaa~~LyK~~pk~~  144 (932)
T KOG2053|consen  116 LFMAYVREKSYKKQQKAALQLYKNFPKRA  144 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            88999999998887776666666777754

>KOG0546|consensus

Probab=96.77  E-value=0.0038  Score=52.36  Aligned_cols=104  Identities=19%  Similarity=0.286  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------C--------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP-----------S--------SALLYAKRGQSYLQLSKPNACIRDCSV  172 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p-----------~--------~~~~~~~la~~~~~~~~~~~Ai~~~~~  172 (231)
                      ........+...++.++|..|...|.++++.-.           +        -...+.+++.+-++.+.+..|+.....
T Consensus       221 ~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~  300 (372)
T KOG0546|consen  221 REEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNE  300 (372)
T ss_pred             hhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccc
Confidence            345566778889999999999999999886411           1        134566788999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       173 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ++..++....+++.+|..+..+.++++|+..+..+....|++.
T Consensus       301 ~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~  343 (372)
T KOG0546|consen  301 ALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK  343 (372)
T ss_pred             ccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence            9999999999999999999999999999999999999999875

>KOG1915|consensus

Probab=96.76  E-value=0.022  Score=49.85  Aligned_cols=98  Identities=17%  Similarity=0.100  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..|...|....+..+...|...+-.||...|.+ ..+...-.+-.++++++.+...|++-|+..|.+..+|...|..-.
T Consensus       404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~  482 (677)
T KOG1915|consen  404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELET  482 (677)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH
Confidence            4555566666667777777777777777777754 334444555567778888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhcC
Q psy13481        193 LLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~  211 (231)
                      .+|+++.|...|.-|+...
T Consensus       483 ~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  483 SLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HhhhHHHHHHHHHHHhcCc
Confidence            8888888888888777654

>PLN03077 Protein ECB2; Provisional

Probab=96.75  E-value=0.029  Score=53.72  Aligned_cols=106  Identities=13%  Similarity=-0.023  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKL--NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP--DSAAAYKFRGR  189 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p--~~~~~~~~lg~  189 (231)
                      ..|..+...+...|+.++|+.+|++..+.  .|+. ..+..+-.++.+.|++++|...|+......+  -+...|..+..
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            44556666667777777777777776653  4543 3344444556677777777777777664332  23456677777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDEQADEWLK  221 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~  221 (231)
                      ++...|++++|...++.. .+.|+...+..+.
T Consensus       634 ~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl  664 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKM-PITPDPAVWGALL  664 (857)
T ss_pred             HHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHH
Confidence            777777777777777764 4566655444443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.011  Score=48.10  Aligned_cols=79  Identities=20%  Similarity=0.200  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchh
Q psy13481        148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN  226 (231)
Q Consensus       148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~  226 (231)
                      ....++=..+...+++..|..+.++.+.++|.++.-+.-+|.+|..+|.+.-|+.+++..+...|++.+...++.-..+
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~  260 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE  260 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            3444555666777777777777777777777777777777777777777777777777777777776655555544433

>KOG1586|consensus

Probab=96.74  E-value=0.048  Score=43.55  Aligned_cols=108  Identities=17%  Similarity=0.149  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH--
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP-----S-SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA--  182 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p-----~-~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~--  182 (231)
                      +.+..+...|+.+-..++|..|=..|-++-..+-     + -+..|..-+.|| +..+..+|+.+++++|++..+-.+  
T Consensus        32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~  110 (288)
T KOG1586|consen   32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFT  110 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHH
Confidence            3355555666777778899999999998877622     2 245566666666 556999999999999999876544  


Q ss_pred             ----HHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCHHHHHH
Q psy13481        183 ----AYKFRGRAYRLL-GKWEEAAVDLRNACKIDFDEQADEW  219 (231)
Q Consensus       183 ----~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~  219 (231)
                          -+..+|.+|..- .+++.|+.+|+++-.....++....
T Consensus       111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss  152 (288)
T KOG1586|consen  111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS  152 (288)
T ss_pred             HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence                334778887665 8999999999999888766543333

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.71  E-value=0.053  Score=46.57  Aligned_cols=102  Identities=20%  Similarity=0.123  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCC
Q psy13481        112 KSNEKKREAIHAYN---DGKFEDAVNAYSE-AIKLNPSSALLYAKRGQSYLQL---------SKPNACIRDCSVALKINP  178 (231)
Q Consensus       112 ~a~~~~~~a~~~~~---~~~~~~Ai~~~~~-al~~~p~~~~~~~~la~~~~~~---------~~~~~Ai~~~~~al~~~p  178 (231)
                      .....+..|.++.+   .|+.++|+..+.. .....+.+++.+.-.|.+|-.+         ...++|+.+|.++.+++|
T Consensus       178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~  257 (374)
T PF13281_consen  178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP  257 (374)
T ss_pred             chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence            34556677888887   8999999999988 5555667888898888887542         236789999999999886


Q ss_pred             CCHH---------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        179 DSAA---------------------------------------------AYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       179 ~~~~---------------------------------------------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      +...                                             .+.-++.+....|++++|..++++++++.|.
T Consensus       258 ~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  258 DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence            5211                                             1122456677888999999999999999875

>KOG2796|consensus

Probab=96.70  E-value=0.0068  Score=49.17  Aligned_cols=81  Identities=15%  Similarity=0.239  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA---AAYKFR  187 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~l  187 (231)
                      ......+..+.++.-.++|.+|...|++++..+|.++.+.++.|.|++.+|+...|++.++.++.+.|...   ...+++
T Consensus       250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL  329 (366)
T KOG2796|consen  250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNL  329 (366)
T ss_pred             hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHH
Confidence            34566777888888999999999999999999999999999999999999999999999999999999753   344555


Q ss_pred             HHHH
Q psy13481        188 GRAY  191 (231)
Q Consensus       188 g~~~  191 (231)
                      ..+|
T Consensus       330 ~tmy  333 (366)
T KOG2796|consen  330 TTMY  333 (366)
T ss_pred             HHHH
Confidence            4443

>KOG4814|consensus

Probab=96.53  E-value=0.036  Score=50.11  Aligned_cols=100  Identities=16%  Similarity=0.093  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      ..+++.|..+++..+|..+++.|...+.--|.+      +....+++.||+.+.+.+.|++.++.|=+.+|.++-.-...
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            456777888899999999999999999887754      56778899999999999999999999999999999888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      -.+....|.-++|+.+........-+
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhhhcc
Confidence            88888889999999988877765433

>KOG3824|consensus

Probab=96.50  E-value=0.013  Score=48.55  Aligned_cols=62  Identities=15%  Similarity=0.030  Sum_probs=57.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       154 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      |.-..+.|+.++|...|+.|+.+.|+++.++..+|......++.-+|-.+|-+|+.++|.++
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence            44446789999999999999999999999999999999999999999999999999999864

>KOG1308|consensus

Probab=96.48  E-value=0.002  Score=53.75  Aligned_cols=72  Identities=24%  Similarity=0.139  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP  178 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p  178 (231)
                      +..+..+..+..+|.++++.+++..||..|..++.++|+.+.-|-.+|.++..+|++.+|..++..+++++-
T Consensus       142 ~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  142 ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY  213 (377)
T ss_pred             ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence            344566788888999999999999999999999999999999999999999999999999999999999874

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.47  E-value=0.082  Score=40.71  Aligned_cols=100  Identities=16%  Similarity=0.028  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHH----
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAA----  182 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~----  182 (231)
                      .-..+..+|..+.+.|++++|+..|.++....-..   .+.+.++-.+.+..+++......+.++-.+-..  +..    
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            35778899999999999999999999987764432   567888889999999999999999988665432  222    


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      ....-|..+...++|..|...|..+..-.
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            33456788888999999999988776544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3364|consensus

Probab=96.45  E-value=0.1  Score=38.12  Aligned_cols=81  Identities=9%  Similarity=0.004  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHcCC---hHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHH
Q psy13481        147 ALLYAKRGQSYLQLSK---PNACIRDCSVALK-INPD-SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWL  220 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~---~~~Ai~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l  220 (231)
                      ....+++|-++.+..+   ..+-|..++..+. -.|. .-...|.++..++.+|+|+.++.+....+...|++. +..+-
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            3445555555555443   3344555555554 2222 223445566666666666666666666666666543 44444


Q ss_pred             Hhhchhh
Q psy13481        221 KEVTPNK  227 (231)
Q Consensus       221 ~~~~~~~  227 (231)
                      +.+..++
T Consensus       112 ~~ied~i  118 (149)
T KOG3364|consen  112 ETIEDKI  118 (149)
T ss_pred             HHHHHHH
Confidence            4444443

>KOG1941|consensus

Probab=96.43  E-value=0.018  Score=48.80  Aligned_cols=99  Identities=17%  Similarity=0.057  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN-----  177 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-----  177 (231)
                      ...+..+|..+...+|+++|+.+..+|.++-...          ..+++.++.++..+|+.-.|.++++.+.++.     
T Consensus       162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd  241 (518)
T KOG1941|consen  162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD  241 (518)
T ss_pred             eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence            3566778888889999999999999999874322          4567788999999999999999999987664     


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        178 -PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       178 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                       +..+..+.-+|.+|+..|+.+.|..-|+.|...-
T Consensus       242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence             3355677889999999999999999999887654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.42  E-value=0.039  Score=48.61  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=18.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy13481        123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRG  154 (231)
Q Consensus       123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la  154 (231)
                      +.+..+...-+..-.+|++++|+.+.+|..+|
T Consensus       178 AWRERnp~aRIkaA~eALei~pdCAdAYILLA  209 (539)
T PF04184_consen  178 AWRERNPQARIKAAKEALEINPDCADAYILLA  209 (539)
T ss_pred             HHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcc
Confidence            34555566666666666666665555555554

The molecular function of this protein is uncertain.

>KOG4151|consensus

Probab=96.41  E-value=0.022  Score=52.39  Aligned_cols=106  Identities=31%  Similarity=0.422  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS----SALLYAKRGQSYLQLS--KPNACIRDCSVALKINPDSAA  182 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~la~~~~~~~--~~~~Ai~~~~~al~~~p~~~~  182 (231)
                      ....+......|+.++..+++..|.--|..++.+-|.    .+....+.+.++..+|  +|..++..++-++...|....
T Consensus        49 ~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~  128 (748)
T KOG4151|consen   49 FLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISK  128 (748)
T ss_pred             HHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHH
Confidence            3445677888999999999999999999999988773    3566777777777655  899999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ++..++.+|...+.++-|++.+.-....+|.+
T Consensus       129 ~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen  129 ALLKRARKYEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999999999999999999987

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.021  Score=46.50  Aligned_cols=72  Identities=22%  Similarity=0.265  Sum_probs=64.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       120 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      =..+...++++.|..+-.+.+.++|+++.-+.-+|.+|.++|.+.-|+.+++..++..|+.+.+-...+...
T Consensus       188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            346778899999999999999999999999999999999999999999999999999999988766655443

>KOG3364|consensus

Probab=96.33  E-value=0.066  Score=39.05  Aligned_cols=79  Identities=10%  Similarity=0.122  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHc---CCHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        113 SNEKKREAIHAYND---GKFEDAVNAYSEAIK-LNPSS-ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       113 a~~~~~~a~~~~~~---~~~~~Ai~~~~~al~-~~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      ....+.+|..+...   .+..+.|.+++..++ -.|.. -++.+.+|..++++++|+.++.+++..++..|+|..+....
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            45566777777654   456688999999996 55543 57888899999999999999999999999999999887654


Q ss_pred             HHHH
Q psy13481        188 GRAY  191 (231)
Q Consensus       188 g~~~  191 (231)
                      -.+.
T Consensus       112 ~~ie  115 (149)
T KOG3364|consen  112 ETIE  115 (149)
T ss_pred             HHHH
Confidence            4443

>KOG1070|consensus

Probab=96.23  E-value=0.076  Score=52.05  Aligned_cols=89  Identities=12%  Similarity=-0.021  Sum_probs=64.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q psy13481        125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAAAYKFRGRAYRLLGKWEEAAV  202 (231)
Q Consensus       125 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~  202 (231)
                      .-+.+++|.++|+..++..-+....|...|..+++..+-++|...+.+|+.--|.  |.......+..-+..|+-+.+..
T Consensus      1542 k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRt 1621 (1710)
T KOG1070|consen 1542 KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRT 1621 (1710)
T ss_pred             HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHH
Confidence            3466777777777777776666777777777777777777777777777777776  66666677777777777777777


Q ss_pred             HHHHHHhcCCC
Q psy13481        203 DLRNACKIDFD  213 (231)
Q Consensus       203 ~~~~al~l~p~  213 (231)
                      .|+-.+.-+|.
T Consensus      1622 lfEgll~ayPK 1632 (1710)
T KOG1070|consen 1622 LFEGLLSAYPK 1632 (1710)
T ss_pred             HHHHHHhhCcc
Confidence            77777777765

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.23  E-value=0.012  Score=33.18  Aligned_cols=29  Identities=38%  Similarity=0.452  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                      .++.++|.+|..+|++++|...+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45667777777777777777777777654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.23  E-value=0.013  Score=32.97  Aligned_cols=31  Identities=16%  Similarity=0.140  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481        147 ALLYAKRGQSYLQLSKPNACIRDCSVALKIN  177 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~  177 (231)
                      +.++.++|.+|..+|+|.+|+..+++++.+.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3567888888888888888888888888764

>KOG1585|consensus

Probab=96.22  E-value=0.045  Score=44.03  Aligned_cols=99  Identities=18%  Similarity=0.156  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCC
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN------PDS  180 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------p~~  180 (231)
                      +.....+|-.....-+.++|+.+|++++.+-..+      .+.+...+.++.++++|.+|...+.+-..++      +.-
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~  189 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ  189 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence            4444455566667788999999999998874433      4567777899999999999888877644332      334


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      .+.+...-.+|....+|..|.++|+....+.
T Consensus       190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence            4556666667777889999999999877664

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.20  E-value=0.13  Score=43.45  Aligned_cols=63  Identities=19%  Similarity=0.212  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP----SSALLYAKRGQSYLQLSKPNACIRDCSVALK  175 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~  175 (231)
                      +..+...+..+.+.|+++-|...+.++...++    ..+.+....+..+...|+..+|+..++..+.
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44555555555555555555555555555431    1344555555555555555555555554444

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.17  E-value=0.071  Score=42.37  Aligned_cols=92  Identities=18%  Similarity=0.150  Sum_probs=69.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHh----C-CCC--HHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhhCCC------CH
Q psy13481        122 HAYNDGKFEDAVNAYSEAIKL----N-PSS--ALLYAKRGQSYLQLSK-------PNACIRDCSVALKINPD------SA  181 (231)
Q Consensus       122 ~~~~~~~~~~Ai~~~~~al~~----~-p~~--~~~~~~la~~~~~~~~-------~~~Ai~~~~~al~~~p~------~~  181 (231)
                      .+.....+++|+..|.-|+-.    . +..  +..+..+|=+|..+|+       +..|+..|.++++....      ..
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            344556888999998888754    2 222  5677778888888888       45667777777765532      24


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ...+.+|..++.+|++++|...|.+++...-.
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            68899999999999999999999999987644

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.07  E-value=0.12  Score=44.35  Aligned_cols=92  Identities=10%  Similarity=0.039  Sum_probs=74.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHH
Q psy13481        122 HAYNDGKFEDAVNAYSEAIKL----NPSSALLYAKRGQSYLQ---LSKPNACIRDCSV-ALKINPDSAAAYKFRGRAYRL  193 (231)
Q Consensus       122 ~~~~~~~~~~Ai~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~Ai~~~~~-al~~~p~~~~~~~~lg~~~~~  193 (231)
                      .|...++|+.-+.+.+..-.+    -++.....+.+|.++.+   .|+.+.|+..+.. .....+.++..+..+|.+|..
T Consensus       150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD  229 (374)
T PF13281_consen  150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD  229 (374)
T ss_pred             HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            455668898888888876655    44567778889999999   9999999999999 445556788999999998754


Q ss_pred             c---------CCHHHHHHHHHHHHhcCCC
Q psy13481        194 L---------GKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       194 ~---------g~~~~A~~~~~~al~l~p~  213 (231)
                      +         ...++|+..|.+++.++|+
T Consensus       230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  230 LFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             HHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence            3         2478899999999999986

>KOG0530|consensus

Probab=96.05  E-value=0.26  Score=40.19  Aligned_cols=92  Identities=18%  Similarity=0.157  Sum_probs=72.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HH
Q psy13481        123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-KPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWE-EA  200 (231)
Q Consensus       123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A  200 (231)
                      +.+...-..|+.+-..+|.++|.+..+|..|-.++..++ +..+-+.++...++-+|.|-.+|+.+-.+...+|+.. .-
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            345556678888888888888888888887777777766 5667788888888888888888888888888888877 77


Q ss_pred             HHHHHHHHhcCCCH
Q psy13481        201 AVDLRNACKIDFDE  214 (231)
Q Consensus       201 ~~~~~~al~l~p~~  214 (231)
                      +++...++..+..+
T Consensus       133 Lef~~~~l~~DaKN  146 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKN  146 (318)
T ss_pred             HHHHHHHHhccccc
Confidence            77778887776654

>KOG1070|consensus

Probab=96.01  E-value=0.12  Score=50.81  Aligned_cols=100  Identities=11%  Similarity=-0.030  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ....|..+|..+++..+-++|-..+.+|+..-|.  +..+....|..-++.|+.+.+...|+-.+.-+|.-...|.-+..
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence            4567888899999999999999999999999998  78889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcC
Q psy13481        190 AYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      .-...|+..-+...|++++.+.
T Consensus      1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHccCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.91  E-value=0.049  Score=37.25  Aligned_cols=55  Identities=18%  Similarity=0.137  Sum_probs=38.5

Q ss_pred             HHcCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        158 LQLSKPNACIRDCSVALKINPD---------SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       158 ~~~~~~~~Ai~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      .+.|+|..|+..+.+.++....         ...++.++|.++...|++++|+..++.|+++-.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            4566677776666666555321         124667788888888888888888888888754

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.90  E-value=0.13  Score=33.83  Aligned_cols=64  Identities=9%  Similarity=0.120  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALL---YAKRGQSYLQLSKPNACIRDCSVALK  175 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~Ai~~~~~al~  175 (231)
                      .+......|.-++...+..+|+..++++++..++...-   +..+..+|...|+|.+.+.+.-+=++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677777888888888888888888877666443   33445667777777777766554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.89  E-value=0.015  Score=32.68  Aligned_cols=30  Identities=27%  Similarity=0.292  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481        148 LLYAKRGQSYLQLSKPNACIRDCSVALKIN  177 (231)
Q Consensus       148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~  177 (231)
                      .+|..+|.+.+..++|.+|+.+|.+++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            356667777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.77  E-value=0.071  Score=36.41  Aligned_cols=58  Identities=10%  Similarity=0.204  Sum_probs=47.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481        121 IHAYNDGKFEDAVNAYSEAIKLNPS---------SALLYAKRGQSYLQLSKPNACIRDCSVALKINP  178 (231)
Q Consensus       121 ~~~~~~~~~~~Ai~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p  178 (231)
                      ......|+|.+|++.+.+.+.....         ...++.++|.++...|++++|+..++.++.+-.
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3457789999999998888876332         145678899999999999999999999998864

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.71  E-value=0.56  Score=39.59  Aligned_cols=85  Identities=16%  Similarity=0.104  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------------------CHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS----------------------------------SALLYAKRGQSY  157 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~----------------------------------~~~~~~~la~~~  157 (231)
                      ........+..+...|+..+|+..++..+.....                                  .+.++..+|...
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            4566778889999999999999999999982110                                  144566667666


Q ss_pred             HHc------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy13481        158 LQL------SKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK  196 (231)
Q Consensus       158 ~~~------~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~  196 (231)
                      ...      +.+++++..|..++.++|.+.++|+.+|..+...=+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~  307 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE  307 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence            666      778888999999999999999999998887765533

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=95.67  E-value=0.058  Score=44.16  Aligned_cols=62  Identities=16%  Similarity=0.082  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481        132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL  193 (231)
Q Consensus       132 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~  193 (231)
                      |+.+|.+|+.+.|.+...|+.+|.++...|+.-.|+-+|-+++-..--.+.+..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997765668888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=95.60  E-value=0.14  Score=42.20  Aligned_cols=74  Identities=30%  Similarity=0.357  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhcCCCHHHHHHH
Q psy13481        148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA-------CKIDFDEQADEWL  220 (231)
Q Consensus       148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------l~l~p~~~~~~~l  220 (231)
                      ..+...+..|...|.+.+|+..+++++.++|-+...+..+-.++..+|+--.+.+.|++.       +-++-++...+|.
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieewy  359 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEWY  359 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHHh
Confidence            345566889999999999999999999999999999999999999999966666666554       4456677777776


Q ss_pred             H
Q psy13481        221 K  221 (231)
Q Consensus       221 ~  221 (231)
                      +
T Consensus       360 ~  360 (361)
T COG3947         360 K  360 (361)
T ss_pred             h
Confidence            5

>KOG2396|consensus

Probab=95.56  E-value=0.11  Score=45.73  Aligned_cols=75  Identities=11%  Similarity=0.120  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK-PNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      +...|.......-+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|...+.++|..+|+++..|..
T Consensus       104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE  179 (568)
T ss_pred             CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence            355666666555666679999999999999999999999999999998886 899999999999999999987754

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.56  E-value=0.68  Score=38.25  Aligned_cols=93  Identities=19%  Similarity=0.216  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481        129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC  208 (231)
Q Consensus       129 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  208 (231)
                      |..=+...++++.-  ....++..++..+...++++.++..+++.+.++|.+-..|..+-.+|...|+...|+..|.+.-
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            44444444444332  3466788889999999999999999999999999999999999999999999999999888877


Q ss_pred             h-------cCCCHHHHHHHHhh
Q psy13481        209 K-------IDFDEQADEWLKEV  223 (231)
Q Consensus       209 ~-------l~p~~~~~~~l~~~  223 (231)
                      +       ++|...+.....++
T Consensus       215 ~~~~edlgi~P~~~~~~~y~~~  236 (280)
T COG3629         215 KTLAEELGIDPAPELRALYEEI  236 (280)
T ss_pred             HHhhhhcCCCccHHHHHHHHHH
Confidence            6       34555555544444

>KOG4507|consensus

Probab=95.55  E-value=0.062  Score=48.31  Aligned_cols=101  Identities=12%  Similarity=0.044  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      ...+...+.-+..+|+..+|+.++..++-..|..  ..++..+|.++.+.|...+|--.+..|+.-.|....-++-+|.+
T Consensus       213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i  292 (886)
T KOG4507|consen  213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNI  292 (886)
T ss_pred             HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHH
Confidence            3333334444556899999999999999887754  34678899999999999999999999999888888889999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      +.++|++......|..+.+.+|.
T Consensus       293 ~aml~~~N~S~~~ydha~k~~p~  315 (886)
T KOG4507|consen  293 YAMLGEYNHSVLCYDHALQARPG  315 (886)
T ss_pred             HHHHhhhhhhhhhhhhhhccCcc
Confidence            99999999999999999999986

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.30  E-value=0.024  Score=47.09  Aligned_cols=80  Identities=10%  Similarity=0.112  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAK-RGQSYLQLSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      ..-..+...|...+.-..+.|-|.+--..|.+++..+|.+++.|.. -+.-+...++++.|...|.+++.+||+++..|+
T Consensus       101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            3444456677777777778889999999999999999999999986 456677888999999999999999999999875


Q ss_pred             H
Q psy13481        186 F  186 (231)
Q Consensus       186 ~  186 (231)
                      .
T Consensus       181 e  181 (435)
T COG5191         181 E  181 (435)
T ss_pred             H
Confidence            4

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.22  E-value=0.026  Score=46.89  Aligned_cols=81  Identities=4%  Similarity=-0.014  Sum_probs=72.4

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        135 AYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF-RGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       135 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      .|.++....|+++..|...+..-.+.|-|.+--..|..++..+|.|...|.. .+.=+...++++.+...|.++++++|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            4556666788999999999999999999999999999999999999999976 556688999999999999999999998


Q ss_pred             HH
Q psy13481        214 EQ  215 (231)
Q Consensus       214 ~~  215 (231)
                      +.
T Consensus       175 ~p  176 (435)
T COG5191         175 SP  176 (435)
T ss_pred             Cc
Confidence            65

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=0.28  Score=44.15  Aligned_cols=96  Identities=20%  Similarity=0.122  Sum_probs=82.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH-HHHHhhCCCCHHHHHHH------HHHH
Q psy13481        119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC-SVALKINPDSAAAYKFR------GRAY  191 (231)
Q Consensus       119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~-~~al~~~p~~~~~~~~l------g~~~  191 (231)
                      +.......++...++-.+..++..+|++..++.++|.+....|..-.++..+ +.+....|++..+...+      |...
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            6677778889989999999999999999999999999998888766555554 45899999998876666      8888


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ..+|+..++..++.++..+.|.+
T Consensus       153 ~~l~~~~~~~~~l~~~~d~~p~~  175 (620)
T COG3914         153 KLLGRTAEAELALERAVDLLPKY  175 (620)
T ss_pred             HHhccHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999875

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.09  E-value=0.26  Score=40.70  Aligned_cols=65  Identities=18%  Similarity=0.203  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI  176 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~  176 (231)
                      ...++..++..+...|+++.++..+++.+..+|.+-..|..+=.+|...|+...|+..|++.-..
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            45677788889999999999999999999999999999999999999999999999999987664

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.09  E-value=0.086  Score=29.21  Aligned_cols=30  Identities=20%  Similarity=0.135  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCC
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVD--LRNACKIDF  212 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~--~~~al~l~p  212 (231)
                      .++.+|..+...|++++|++.  |+-+..+++
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            445555556666666666666  335555544

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.94  E-value=1.3  Score=37.48  Aligned_cols=82  Identities=13%  Similarity=0.013  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q psy13481        129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL---LGKWEEAAVDLR  205 (231)
Q Consensus       129 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~  205 (231)
                      .+..+..|++|++.+|++..++..+=.+..+..+.+....-+++++..+|.+...|..+-.....   .-.+......|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            46778999999999999999998888888888899999999999999999998887554332222   235777777777


Q ss_pred             HHHhc
Q psy13481        206 NACKI  210 (231)
Q Consensus       206 ~al~l  210 (231)
                      +++..
T Consensus       127 ~~l~~  131 (321)
T PF08424_consen  127 KCLRA  131 (321)
T ss_pred             HHHHH
Confidence            77764

>KOG0529|consensus

Probab=94.93  E-value=1  Score=38.99  Aligned_cols=107  Identities=18%  Similarity=0.175  Sum_probs=64.2

Q ss_pred             HHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------------ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        123 AYNDGKFE-DAVNAYSEAIKLNPSSALLYAKRGQSYLQLS------------KPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       123 ~~~~~~~~-~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~------------~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ....|.|+ +++.+-.+.+..+|+...+|+.+-.++....            -.++-+.....++..||++..+|+.+.+
T Consensus        38 ~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w  117 (421)
T KOG0529|consen   38 KREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKW  117 (421)
T ss_pred             HHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            33444444 4666666666777777766665543333222            1344555666677777777777777777


Q ss_pred             HHHHcC--CHHHHHHHHHHHHhcCCCH-HHHHHHHhhchhhhc
Q psy13481        190 AYRLLG--KWEEAAVDLRNACKIDFDE-QADEWLKEVTPNKLN  229 (231)
Q Consensus       190 ~~~~~g--~~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~~~k  229 (231)
                      ++...+  +|..-+....+++++||.+ -++..-+-|...+++
T Consensus       118 ~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~  160 (421)
T KOG0529|consen  118 VLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER  160 (421)
T ss_pred             HHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence            776665  3566777777777777753 255555555554443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.89  E-value=0.39  Score=38.16  Aligned_cols=79  Identities=20%  Similarity=0.043  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481        110 IDKSNEKKREAIHAYNDGKF-------EDAVNAYSEAIKLNPS------SALLYAKRGQSYLQLSKPNACIRDCSVALKI  176 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~-------~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~  176 (231)
                      ...+..+...|..+...|+.       ..|++.|.+++.....      ...+.+.+|.++.++|++++|+.+|.+++..
T Consensus       115 s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  115 SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            35577777888888888874       4566666666655322      2578889999999999999999999999987


Q ss_pred             CCCCH-HHHHHHH
Q psy13481        177 NPDSA-AAYKFRG  188 (231)
Q Consensus       177 ~p~~~-~~~~~lg  188 (231)
                      ...+. ..+..++
T Consensus       195 ~~~s~~~~l~~~A  207 (214)
T PF09986_consen  195 KKASKEPKLKDMA  207 (214)
T ss_pred             CCCCCcHHHHHHH
Confidence            65443 3444443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.85  E-value=0.14  Score=49.18  Aligned_cols=97  Identities=14%  Similarity=0.096  Sum_probs=76.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        120 AIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLS-------KPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       120 a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~-------~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ..+....+.|+.|+..|++.....|.-   .++.++.|..++..-       .+.+|+..|++.-. .|.-+--|...+.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence            345677789999999999999988854   577888888887643       36677777765432 3455667888899


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCHHHH
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDEQAD  217 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~~~~  217 (231)
                      +|..+|+|++-+++|.-|++.+|.+...
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            9999999999999999999999986533

>KOG2047|consensus

Probab=94.67  E-value=0.79  Score=41.93  Aligned_cols=103  Identities=12%  Similarity=-0.014  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC----------------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--NP----------------SSALLYAKRGQSYLQLSKPNACIRDCSV  172 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--~p----------------~~~~~~~~la~~~~~~~~~~~Ai~~~~~  172 (231)
                      +-+..|...|..-+...+++.|+.+.+.|...  +|                ++...|...+...-..|-++.....|++
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr  502 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR  502 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            34778888998888999999999999998865  11                1355777888888889999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       173 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      .|++.--.+..-.|.|..+....-+++|.+.|++.+.+.+-
T Consensus       503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~  543 (835)
T KOG2047|consen  503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW  543 (835)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence            99999999999999999999999999999999999999864

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.59  E-value=0.53  Score=39.80  Aligned_cols=82  Identities=15%  Similarity=-0.014  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy13481        133 VNAYSEAIKLNPSSALLYAKRGQSYLQLSK------------PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA  200 (231)
Q Consensus       133 i~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  200 (231)
                      ..-|++.++.+|++..+|..+....-.+-.            .+.-+..|++||+.+|++...+..+=.++....+-+..
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l   84 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL   84 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            346888999999999999988866655533            45667889999999999999998888888899999999


Q ss_pred             HHHHHHHHhcCCCH
Q psy13481        201 AVDLRNACKIDFDE  214 (231)
Q Consensus       201 ~~~~~~al~l~p~~  214 (231)
                      .+-+++++..+|++
T Consensus        85 ~~~we~~l~~~~~~   98 (321)
T PF08424_consen   85 AKKWEELLFKNPGS   98 (321)
T ss_pred             HHHHHHHHHHCCCC
Confidence            99999999999974

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=94.59  E-value=0.16  Score=28.14  Aligned_cols=31  Identities=10%  Similarity=0.028  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHH--HHHHHhhCC
Q psy13481        148 LLYAKRGQSYLQLSKPNACIRD--CSVALKINP  178 (231)
Q Consensus       148 ~~~~~la~~~~~~~~~~~Ai~~--~~~al~~~p  178 (231)
                      +.|+.+|..+...|+|++|+..  |.-+..+++
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            3455556666666666666666  325555444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG0530|consensus

Probab=94.54  E-value=0.66  Score=37.89  Aligned_cols=87  Identities=15%  Similarity=0.195  Sum_probs=79.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy13481        126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPN-ACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDL  204 (231)
Q Consensus       126 ~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  204 (231)
                      ..+..+-++.+++.+.-+|.+..+|..|-.+.-.+|++. .-+..+..++..+..|-.+|..+-+++...+.|+.-+.+.
T Consensus        91 ~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~  170 (318)
T KOG0530|consen   91 MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYA  170 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence            356778899999999999999999999999999999988 8899999999999999999999999999999999999888


Q ss_pred             HHHHhcCC
Q psy13481        205 RNACKIDF  212 (231)
Q Consensus       205 ~~al~l~p  212 (231)
                      ...++.|-
T Consensus       171 ~~Lle~Di  178 (318)
T KOG0530|consen  171 DELLEEDI  178 (318)
T ss_pred             HHHHHHhh
Confidence            88887763

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.53  E-value=2.2  Score=35.13  Aligned_cols=98  Identities=18%  Similarity=0.124  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhhCCCC
Q psy13481        113 SNEKKREAIHAYN----DGKFEDAVNAYSEAIKLNPSS-ALLYAKRGQSYLQLS-------KPNACIRDCSVALKINPDS  180 (231)
Q Consensus       113 a~~~~~~a~~~~~----~~~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~Ai~~~~~al~~~p~~  180 (231)
                      +...+.+|..+..    ..++.+|...|.++....-.. ..+.+.+|.+|..-.       +...|+..|.++....  +
T Consensus       109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~  186 (292)
T COG0790         109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N  186 (292)
T ss_pred             HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence            4566677777776    459999999999998885433 344778888886641       2347999999988876  8


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q psy13481        181 AAAYKFRGRAYRL----LGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       181 ~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p  212 (231)
                      ..+.+.+|.+|..    ..++.+|..+|.++.....
T Consensus       187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            8888999988755    3388999999999999887

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.36  E-value=1.1  Score=38.75  Aligned_cols=94  Identities=21%  Similarity=0.181  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQS--YLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ..+...+...+-.|+|+.|...|+..+ -+|. ...+..+|..  -.++|.++.|+.+.+++....|.-+.++...=...
T Consensus       121 LIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPE-tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r  198 (531)
T COG3898         121 LIHLLEAQAALLEGDYEDARKKFEAML-DDPE-TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR  198 (531)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHh-cChH-HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence            344556778888999999999999765 3553 3344444443  34688999999999999999999999888887888


Q ss_pred             HHcCCHHHHHHHHHHHHh
Q psy13481        192 RLLGKWEEAAVDLRNACK  209 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~  209 (231)
                      ...|+|+.|++.......
T Consensus       199 ~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         199 CAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HhcCChHHHHHHHHHHHH
Confidence            899999999998876554

>KOG3617|consensus

Probab=94.36  E-value=0.4  Score=45.06  Aligned_cols=97  Identities=23%  Similarity=0.116  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH----------HhCCC----------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAI----------KLNPS----------SALLYAKRGQSYLQLSKPNACIRDCSVA  173 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al----------~~~p~----------~~~~~~~la~~~~~~~~~~~Ai~~~~~a  173 (231)
                      ..+++.|..+-..++.+.|+++|+++-          .-+|.          +..+|.+-|..+-..|+.+.|+..|..|
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA  938 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            456778888888899999999998753          22443          3456777799999999999999998876


Q ss_pred             HhhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        174 LKIN---------------------PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       174 l~~~---------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                      -+..                     ..+-.+.|.+|..|...|+..+|+.+|.+|...
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            4432                     345668899999999999999999998887554

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.24  E-value=1.6  Score=38.42  Aligned_cols=94  Identities=19%  Similarity=0.147  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH-------------------------------------------
Q psy13481        113 SNEKKREAIHAYNDGK-FEDAVNAYSEAIKLNPSSAL-------------------------------------------  148 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~-~~~Ai~~~~~al~~~p~~~~-------------------------------------------  148 (231)
                      +..+..-|..++..|. -++|+..++.+++..+.+..                                           
T Consensus       379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~  458 (549)
T PF07079_consen  379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS  458 (549)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence            3444556677777777 77888888888877666422                                           


Q ss_pred             ---HHHHH--HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481        149 ---LYAKR--GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA  207 (231)
Q Consensus       149 ---~~~~l--a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  207 (231)
                         .-+.+  |..++..|+|.+|.-...=...+.| ++.++..+|.|.....+|++|-.++...
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence               11122  4567788999999999888999999 9999999999999999999999988743

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.10  E-value=0.63  Score=30.62  Aligned_cols=60  Identities=13%  Similarity=0.134  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHh
Q psy13481        150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF---RGRAYRLLGKWEEAAVDLRNACK  209 (231)
Q Consensus       150 ~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~---lg~~~~~~g~~~~A~~~~~~al~  209 (231)
                      ....|.-++..++..+|+..++++++..++...-+..   +..+|...|+|.+.+++-.+-+.
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456777788899999999999999999887765544   45568888999888877554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.07  E-value=0.092  Score=29.48  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      .+|..+|.+....++|+.|+.+|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467889999999999999999999998764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.06  E-value=2.7  Score=36.43  Aligned_cols=98  Identities=19%  Similarity=0.175  Sum_probs=67.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481        123 AYNDGKFEDAVNAYSEAIKL---NPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL  194 (231)
Q Consensus       123 ~~~~~~~~~Ai~~~~~al~~---~p~~-----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~  194 (231)
                      .+..|+|+.|+.+.+.....   .++.     +.++...+.... .-+...|..+...++++.|+..-+-..-+.+++..
T Consensus       198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d  276 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRD  276 (531)
T ss_pred             HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc
Confidence            45667777777777665543   2221     112222222221 22467777788888888888888888889999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy13481        195 GKWEEAAVDLRNACKIDFDEQADEWLK  221 (231)
Q Consensus       195 g~~~~A~~~~~~al~l~p~~~~~~~l~  221 (231)
                      |+..++-..++.+.+..|+-.+.....
T Consensus       277 ~~~rKg~~ilE~aWK~ePHP~ia~lY~  303 (531)
T COG3898         277 GNLRKGSKILETAWKAEPHPDIALLYV  303 (531)
T ss_pred             cchhhhhhHHHHHHhcCCChHHHHHHH
Confidence            999999999999999999866555443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.92  E-value=2.3  Score=35.06  Aligned_cols=104  Identities=11%  Similarity=-0.010  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCC---C-------HHHHHHHHHHHHHcCChH---HHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDG-KFEDAVNAYSEAIKL----NPS---S-------ALLYAKRGQSYLQLSKPN---ACIRDC  170 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~-~~~~Ai~~~~~al~~----~p~---~-------~~~~~~la~~~~~~~~~~---~Ai~~~  170 (231)
                      ...-+..++..|...+..+ +++.|+..++++.++    ...   .       ...+..++.+|...+.++   .|....
T Consensus        31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l  110 (278)
T PF08631_consen   31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNAL  110 (278)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            3455788999999999999 999999999999988    221   1       456778899999988765   344455


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       171 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      +.+-.-.|+.+..++..=.++...++.+.+...+.+.+.--+
T Consensus       111 ~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  111 RLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            555556688887775544455558889999888888887543

It is also involved in sporulation [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.89  E-value=1.2  Score=31.90  Aligned_cols=68  Identities=10%  Similarity=0.122  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAI-------KLNPSSAL----LYAKRGQSYLQLSKPNACIRDCSVALKI  176 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al-------~~~p~~~~----~~~~la~~~~~~~~~~~Ai~~~~~al~~  176 (231)
                      +--++..+..++..+...|+|++++..-.+++       +++.+...    +.+++|.++-.+|+.++|+..|+.+-++
T Consensus        51 ~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   51 DGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            33456777788899999999998776655555       45666544    4568999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=93.84  E-value=0.12  Score=44.82  Aligned_cols=55  Identities=22%  Similarity=0.184  Sum_probs=26.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481        118 REAIHAYNDGKFEDAVNAYSEAIKLNPS---------SALLYAKRGQSYLQLSKPNACIRDCSVA  173 (231)
Q Consensus       118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~Ai~~~~~a  173 (231)
                      .+..++.-.|||..|+..++-. .++..         ....++..|-+|+.++||.+|++.|..+
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i  190 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI  190 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556666655554431 22111         1334555555555566665555555443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.71  E-value=0.29  Score=40.00  Aligned_cols=61  Identities=15%  Similarity=0.068  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCHHHHHHHHhhchh
Q psy13481        166 CIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKEVTPN  226 (231)
Q Consensus       166 Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~l~~~~~~  226 (231)
                      |+.+|.+|+.+.|.++..|+.+|.++...|+.=.|+-+|-+++... |-..+...+..+..+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999653 545566666666555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=93.66  E-value=1.6  Score=37.63  Aligned_cols=106  Identities=15%  Similarity=-0.118  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----CH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-SA-LLYAKRGQSYLQLSKPNACIRDCSVALKINPD-----SA  181 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-~~-~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~-----~~  181 (231)
                      +..--.+++.....+.++|-+..|++..+-.+.++|. ++ .+.+.+-...++.++|+--+..++........     -+
T Consensus        99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP  178 (360)
T PF04910_consen   99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP  178 (360)
T ss_pred             chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence            3444677888889999999999999999999999998 54 34555666667888998888888876653222     23


Q ss_pred             HHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhcCCCH
Q psy13481        182 AAYKFRGRAYRLLGKW---------------EEAAVDLRNACKIDFDE  214 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~---------------~~A~~~~~~al~l~p~~  214 (231)
                      ..-+.++.+++.+++-               +.|...+++|+...|.-
T Consensus       179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            5678899999999998               89999999999999963

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0529|consensus

Probab=93.66  E-value=1.1  Score=38.75  Aligned_cols=88  Identities=18%  Similarity=0.205  Sum_probs=72.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----HHHH
Q psy13481        127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK--PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK----WEEA  200 (231)
Q Consensus       127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~----~~~A  200 (231)
                      .-+++-+.+...+++.+|++..+|+.|.-++.+.+.  +..=+..++++++.+|.|..+|..+-.+......    ..+-
T Consensus        89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E  168 (421)
T KOG0529|consen   89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE  168 (421)
T ss_pred             HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence            366777889999999999999999999999988774  6788999999999999999999877766654443    5666


Q ss_pred             HHHHHHHHhcCCCH
Q psy13481        201 AVDLRNACKIDFDE  214 (231)
Q Consensus       201 ~~~~~~al~l~p~~  214 (231)
                      +.+..+++.-++.|
T Consensus       169 l~ftt~~I~~nfSN  182 (421)
T KOG0529|consen  169 LEFTTKLINDNFSN  182 (421)
T ss_pred             HHHHHHHHhccchh
Confidence            77788888777764

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=93.55  E-value=0.11  Score=26.28  Aligned_cols=22  Identities=32%  Similarity=0.084  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDL  204 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~  204 (231)
                      +.+.+|.++..+|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3445555555555555555544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4814|consensus

Probab=93.50  E-value=0.36  Score=43.97  Aligned_cols=68  Identities=18%  Similarity=0.123  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHH
Q psy13481        149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDS------AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQA  216 (231)
Q Consensus       149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  216 (231)
                      .+.+-|.-+++.++|..++++|...+...|.+      ++...+++.||..+.+.+.|.+.++.|-+.+|.+..
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l  429 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL  429 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH
Confidence            45567888999999999999999999877654      567888999999999999999999999999987653

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=93.37  E-value=0.11  Score=41.51  Aligned_cols=107  Identities=15%  Similarity=0.067  Sum_probs=67.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCChH-HH-HHHHHHHHhhC--CCC--HHHH
Q psy13481        123 AYNDGKFEDAVNAYSEAIKLNPSS------------ALLYAKRGQSYLQLSKPN-AC-IRDCSVALKIN--PDS--AAAY  184 (231)
Q Consensus       123 ~~~~~~~~~Ai~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~-~A-i~~~~~al~~~--p~~--~~~~  184 (231)
                      ++.-|+|+.|++...-||+.+-.-            ++-...-+...+..|+.- -. ...+..+..-.  |+-  ++.|
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~  172 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY  172 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence            466799999999999999874322            222223344455556521 11 11122221111  222  3456


Q ss_pred             HHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhhc
Q psy13481        185 KFRGRAYR---------LLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN  229 (231)
Q Consensus       185 ~~lg~~~~---------~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~k  229 (231)
                      ...|..+.         ..++...|+..|++|+.++|.......++++...++.
T Consensus       173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~  226 (230)
T PHA02537        173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKA  226 (230)
T ss_pred             HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhh
Confidence            66777773         4568889999999999999997778888888777654

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=93.37  E-value=2  Score=37.02  Aligned_cols=100  Identities=12%  Similarity=0.035  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCC---HHHHHHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------------------------NPSS---ALLYAKRGQSY  157 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------------------------~p~~---~~~~~~la~~~  157 (231)
                      ...|-.+..+.+.+.++...|++..|-++.++|+-.                          .+.|   ..+.++....+
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            455666788888888888888888888888888632                          1111   33555667777


Q ss_pred             HHcCChHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q psy13481        158 LQLSKPNACIRDCSVALKINPD-SAA-AYKFRGRAYRLLGKWEEAAVDLRN  206 (231)
Q Consensus       158 ~~~~~~~~Ai~~~~~al~~~p~-~~~-~~~~lg~~~~~~g~~~~A~~~~~~  206 (231)
                      .+.|-+.-|+++++-.+.++|. ++- +++.+-......++|+--+..+..
T Consensus       114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~  164 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES  164 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence            7888888888888888888887 653 444444455555666655555544

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=93.36  E-value=0.41  Score=27.79  Aligned_cols=25  Identities=28%  Similarity=0.199  Sum_probs=17.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACK  209 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~  209 (231)
                      +.++.+|..+|+++.|...++..+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4567777777777777777777774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2300|consensus

Probab=93.24  E-value=2.1  Score=38.04  Aligned_cols=97  Identities=21%  Similarity=0.145  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-S--ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---------  180 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---------  180 (231)
                      +...+.+|.....-+.|+.|...|..|+++-.. +  +-+-.++|.+|++.++-+.-.+.++   .+.|.|         
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHH
Confidence            445556676777779999999999999987443 2  3345578999999887544333332   233432         


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        181 -AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       181 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                       ..+++..|...+..+++.+|...++..+++.-
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman  476 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMAN  476 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence             34788899999999999999999999999874

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.22  E-value=1.1  Score=36.99  Aligned_cols=91  Identities=23%  Similarity=0.191  Sum_probs=66.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhC----C---CC------
Q psy13481        123 AYNDGKFEDAVNAYSEAIKLN----PSS----ALLYAKRGQSYLQLS-KPNACIRDCSVALKIN----P---DS------  180 (231)
Q Consensus       123 ~~~~~~~~~Ai~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~Ai~~~~~al~~~----p---~~------  180 (231)
                      +...|+++.|..+|.++-...    |+.    +..+++.|...+..+ +|..|+.++++++++-    .   .+      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            457789999999988887654    322    668889999999999 9999999999999882    1   11      


Q ss_pred             -HHHHHHHHHHHHHcCCHHHH---HHHHHHHHhcCCC
Q psy13481        181 -AAAYKFRGRAYRLLGKWEEA---AVDLRNACKIDFD  213 (231)
Q Consensus       181 -~~~~~~lg~~~~~~g~~~~A---~~~~~~al~l~p~  213 (231)
                       ..++..++.+|...+.++..   ...++.+-.-.|+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~  119 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN  119 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC
Confidence             23677889999888876544   4444444444555

It is also involved in sporulation [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.22  E-value=2.1  Score=32.30  Aligned_cols=77  Identities=17%  Similarity=0.092  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      ...+..+..+-...++..++...+.-.-.+.|.++..-..-|+.+...|+|.+|+..|+....-.|... ...++.-|
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            345666677777888999999999999999999999999999999999999999999999988888655 44444433

>KOG1258|consensus

Probab=93.12  E-value=2.9  Score=37.91  Aligned_cols=112  Identities=12%  Similarity=0.002  Sum_probs=96.1

Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCH
Q psy13481        103 IEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-PDSA  181 (231)
Q Consensus       103 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-p~~~  181 (231)
                      ..+.+-+..+...|......-...|++....-.|++++--......+|.+.+......|+..-|-..+.++.++. |..+
T Consensus       287 fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~  366 (577)
T KOG1258|consen  287 FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP  366 (577)
T ss_pred             cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc
Confidence            344445566678888888888899999999999999999998999999999999999999999988888888776 5667


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ......+......|++..|...|++...-.|+.
T Consensus       367 ~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~  399 (577)
T KOG1258|consen  367 IIHLLEARFEESNGNFDDAKVILQRIESEYPGL  399 (577)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch
Confidence            777788888899999999999999999887873

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.03  E-value=0.97  Score=34.76  Aligned_cols=66  Identities=11%  Similarity=0.111  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      ..++..+|..|.+.|+++.|++.|.++.+.....   ...+..+-.+....|+|........++-.+-.
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            4688899999999999999999999988876443   24667788889999999999999999887654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1914|consensus

Probab=93.02  E-value=0.72  Score=41.31  Aligned_cols=102  Identities=14%  Similarity=0.030  Sum_probs=74.7

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481        104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA  183 (231)
Q Consensus       104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~  183 (231)
                      +..+++|.+..+|+.+-..+..+ -+++..+.|++.+...|.++.+|.......+..++|......|.++|..- -|...
T Consensus        11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-LnlDL   88 (656)
T KOG1914|consen   11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-LNLDL   88 (656)
T ss_pred             HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-hhHhH
Confidence            34456778888888888777766 89999999999999999999999999999999999999999998888643 22334


Q ss_pred             H-HHHHHHHHHcCCHHHHHHHHHHH
Q psy13481        184 Y-KFRGRAYRLLGKWEEAAVDLRNA  207 (231)
Q Consensus       184 ~-~~lg~~~~~~g~~~~A~~~~~~a  207 (231)
                      | +.+..+..-.|+...+....-+|
T Consensus        89 W~lYl~YVR~~~~~~~~~r~~m~qA  113 (656)
T KOG1914|consen   89 WKLYLSYVRETKGKLFGYREKMVQA  113 (656)
T ss_pred             HHHHHHHHHHHccCcchHHHHHHHH
Confidence            4 23455555566555544333333

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=93.02  E-value=0.44  Score=41.44  Aligned_cols=58  Identities=12%  Similarity=0.086  Sum_probs=45.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHH-------Hhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481        152 KRGQSYLQLSKPNACIRDCSVA-------LKI-NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK  209 (231)
Q Consensus       152 ~la~~~~~~~~~~~Ai~~~~~a-------l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  209 (231)
                      .+..++.-+|+|..|++.++-.       +.. -+.+...+|..|.+|.++++|.+|++.|...+-
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888899999999887532       111 245677889999999999999999999988774

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.98  E-value=0.14  Score=25.86  Aligned_cols=23  Identities=13%  Similarity=0.089  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHH
Q psy13481        149 LYAKRGQSYLQLSKPNACIRDCS  171 (231)
Q Consensus       149 ~~~~la~~~~~~~~~~~Ai~~~~  171 (231)
                      +++.+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45666677777777777666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1550|consensus

Probab=92.89  E-value=2.1  Score=39.08  Aligned_cols=97  Identities=16%  Similarity=0.075  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhhC
Q psy13481        113 SNEKKREAIHAYN-----DGKFEDAVNAYSEAIKL-----NPSSALLYAKRGQSYLQLS-----KPNACIRDCSVALKIN  177 (231)
Q Consensus       113 a~~~~~~a~~~~~-----~~~~~~Ai~~~~~al~~-----~p~~~~~~~~la~~~~~~~-----~~~~Ai~~~~~al~~~  177 (231)
                      +......|.+++.     .+|.+.|+.+|..+...     .-..+.+.+.+|.+|.+-.     ++..|+..+.++-+..
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g  323 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG  323 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence            4444445544443     36888888888887661     1114456677777777743     5667777777777664


Q ss_pred             CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC
Q psy13481        178 PDSAAAYKFRGRAYRLLG---KWEEAAVDLRNACKID  211 (231)
Q Consensus       178 p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~  211 (231)
                        ++.+.+.+|.++..-.   ++..|.++|..|....
T Consensus       324 --~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G  358 (552)
T KOG1550|consen  324 --NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG  358 (552)
T ss_pred             --CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence              5556666777666555   4567777777776554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.80  E-value=2  Score=33.66  Aligned_cols=75  Identities=19%  Similarity=0.181  Sum_probs=57.4

Q ss_pred             HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHH
Q psy13481        125 NDGKFEDAVNAYSEAIKLNP--SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD----SAAAYKFRGRAYRLLGKWE  198 (231)
Q Consensus       125 ~~~~~~~Ai~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~  198 (231)
                      .+-.-+.|...|-++ +-.|  +.+...+.+|..|. ..+..+++..+.+++++...    |+.++..++.++..+|+++
T Consensus       118 sr~~d~~A~~~fL~~-E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGDQEALRRFLQL-EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCcHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            333335566555543 2233  56889999998876 67889999999999999754    5889999999999999999


Q ss_pred             HHH
Q psy13481        199 EAA  201 (231)
Q Consensus       199 ~A~  201 (231)
                      .|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            885

>KOG1550|consensus

Probab=92.59  E-value=3.2  Score=37.92  Aligned_cols=90  Identities=18%  Similarity=0.072  Sum_probs=72.0

Q ss_pred             HHHHHHHHc----C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        118 REAIHAYND----G-KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS---KPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       118 ~~a~~~~~~----~-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      .+|..+...    . ++..|+.+|.++....  ++.+.+.+|.++..-.   ++..|..+|..|...  .+..+.+++|.
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~  368 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLAL  368 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHH
Confidence            455555553    2 7889999999998875  4577888898887766   578999999998876  47889999999


Q ss_pred             HHHHc----CCHHHHHHHHHHHHhcC
Q psy13481        190 AYRLL----GKWEEAAVDLRNACKID  211 (231)
Q Consensus       190 ~~~~~----g~~~~A~~~~~~al~l~  211 (231)
                      ||..-    -+...|..+|.++...+
T Consensus       369 ~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  369 CYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            88653    37889999999999988

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.49  E-value=1.4  Score=38.83  Aligned_cols=58  Identities=16%  Similarity=0.126  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV  172 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~  172 (231)
                      .....-|.-++..|+|.++.-+-.-..++.| ++.++..+|.|++..++|.+|..++..
T Consensus       463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            3445567788999999999999999999999 999999999999999999999988854

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.13  E-value=0.71  Score=34.13  Aligned_cols=49  Identities=14%  Similarity=0.149  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK  162 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~  162 (231)
                      ......|..++..|+|.-|..+.+.++..+|++..+...++.++.++|.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            4556677778888888888888888888888888888888877766664

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.06  E-value=0.51  Score=24.43  Aligned_cols=29  Identities=31%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy13481        127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQ  155 (231)
Q Consensus       127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~  155 (231)
                      |+++.|...|++++...|.+..+|...+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            45677777777777777777777776654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=92.05  E-value=1.3  Score=34.32  Aligned_cols=57  Identities=25%  Similarity=0.154  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHH
Q psy13481        163 PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWL  220 (231)
Q Consensus       163 ~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l  220 (231)
                      ....++..++.+...| ++.++.+++.++..+|+.++|....+++..+.|.+....+.
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~  183 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ  183 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            3455666777777777 77888999999999999999999999999999977666655

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=91.97  E-value=6.1  Score=32.50  Aligned_cols=82  Identities=23%  Similarity=0.212  Sum_probs=67.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------
Q psy13481        128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG--------  195 (231)
Q Consensus       128 ~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g--------  195 (231)
                      +...|+..|.++-...  +..+.+++|.+|..    ..++.+|+.+|.++.+...  ..+.+.++ +++..|        
T Consensus       170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~  244 (292)
T COG0790         170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF  244 (292)
T ss_pred             HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence            3447999999987775  78899999988865    3489999999999999886  88889999 777766        


Q ss_pred             -------CHHHHHHHHHHHHhcCCCH
Q psy13481        196 -------KWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       196 -------~~~~A~~~~~~al~l~p~~  214 (231)
                             +...|...+..+....+..
T Consensus       245 ~~~~~~~~~~~a~~~~~~~~~~~~~~  270 (292)
T COG0790         245 LTAAKEEDKKQALEWLQKACELGFDN  270 (292)
T ss_pred             cccccCCCHHHHHHHHHHHHHcCChh
Confidence                   8888999999998887753

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.74  E-value=1.6  Score=38.85  Aligned_cols=80  Identities=21%  Similarity=0.260  Sum_probs=56.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481        122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA  201 (231)
Q Consensus       122 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  201 (231)
                      ..+..|+...|-..+..+++..|..+.....++.++..+|.|+.|..++.-+=.+-....++..-+-...+.+|+|++|.
T Consensus       298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence            44677999999999999999999999999999999999999999988876554443333333333333344444444443

>KOG2581|consensus

Probab=91.66  E-value=2.7  Score=36.54  Aligned_cols=109  Identities=12%  Similarity=0.022  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C-C--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CCCHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL---N-P--SSALLYAKRGQSYLQLSKPNACIRDCSVALKIN----PDSAA  182 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~---~-p--~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~----p~~~~  182 (231)
                      +..|+.....+-..|+...-...+...+..   . -  .-+...+.+-.+|+..+-|++|-....++.--.    ...+.
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR  248 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence            455555666666677766555555554443   1 1  225567778888889999999987777665211    13355


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK  221 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~  221 (231)
                      .+|.+|.+..-+++|..|.++|-+|+...|.+.+.-..+
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q  287 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQ  287 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHH
Confidence            778899999999999999999999999999754443333

>KOG0546|consensus

Probab=91.62  E-value=0.15  Score=43.10  Aligned_cols=82  Identities=17%  Similarity=0.113  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy13481        116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG  195 (231)
Q Consensus       116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g  195 (231)
                      ....+...+..+.+..|+..-..+++.++....+++.++..+..+.++++|++++..+....|++......+..+-....
T Consensus       278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~  357 (372)
T KOG0546|consen  278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK  357 (372)
T ss_pred             ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence            33466677778889999988888888889899999999999999999999999999999999999887666655544444


Q ss_pred             CH
Q psy13481        196 KW  197 (231)
Q Consensus       196 ~~  197 (231)
                      ++
T Consensus       358 ~~  359 (372)
T KOG0546|consen  358 QY  359 (372)
T ss_pred             HH
Confidence            43

>KOG1839|consensus

Probab=91.49  E-value=0.58  Score=45.85  Aligned_cols=104  Identities=14%  Similarity=0.137  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN--  177 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--  177 (231)
                      .+++.+..+..++..+...+++++|+..-.++.-+        .|+....+.+++...+..++...|+..+.++..+.  
T Consensus       968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen  968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred             cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence            45667888899999999999999999887777644        45567889999999999999999999999987764  


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        178 ------PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       178 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                            |.-+....+++.++...++++.|+.+++.|+++.
T Consensus      1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence                  4445567889999999999999999999999854

>KOG1310|consensus

Probab=90.97  E-value=0.56  Score=41.94  Aligned_cols=72  Identities=15%  Similarity=0.045  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481        110 IDKSNEKKREAIHAYND---GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA  181 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~---~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~  181 (231)
                      +.....+..+|.+++++   |+.-.|+.....|++++|....+|+.++.++..++++.+|+.+...+...+|.+.
T Consensus       405 ~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  405 PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            33455666677777765   4556788888889999999999999999999999999999999999999888554

>KOG0686|consensus

Probab=90.91  E-value=2.4  Score=36.81  Aligned_cols=96  Identities=19%  Similarity=0.055  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS---SALLYAKRGQSYLQLSKPNACIRDCSVALKIN--------PDSA  181 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--------p~~~  181 (231)
                      -.++..+|..|+.-|+++.|+..|.++-...-.   ....|.+.-.+-..+|+|..-.....+|...-        --.+
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            356677889999999999999999995443322   36778888888999999999888888887651        1234


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNAC  208 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al  208 (231)
                      ...+.-|.+...+++|..|.+.|-.+.
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            577788899999999999999887664

>KOG2047|consensus

Probab=90.69  E-value=5.7  Score=36.68  Aligned_cols=104  Identities=12%  Similarity=-0.053  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHH--
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP--DSAAAYKF--  186 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p--~~~~~~~~--  186 (231)
                      .....|...+...-..|-++.....|++.|.+.--.+....|.|..+-...-+.+|.+.|++.|.+.+  .-...|..  
T Consensus       475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL  554 (835)
T KOG2047|consen  475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL  554 (835)
T ss_pred             HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence            34556666666667778888888888888888777788888888888877788888888888888873  33344432  


Q ss_pred             -HHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        187 -RGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       187 -lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                       ....-+.--..+.|...|++|+...|..
T Consensus       555 tkfi~rygg~klEraRdLFEqaL~~Cpp~  583 (835)
T KOG2047|consen  555 TKFIKRYGGTKLERARDLFEQALDGCPPE  583 (835)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhcCCHH
Confidence             2222233336788888888888888753

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.42  E-value=1.8  Score=28.28  Aligned_cols=31  Identities=29%  Similarity=0.475  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL  142 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~  142 (231)
                      .+..+..+|..+-+.|++.+|+.+|+++++.
T Consensus         5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            3566677788888888888888877776654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG3807|consensus

Probab=90.36  E-value=3.7  Score=34.87  Aligned_cols=95  Identities=18%  Similarity=0.099  Sum_probs=67.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------------------
Q psy13481        117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-------------------  177 (231)
Q Consensus       117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-------------------  177 (231)
                      +..-....+..+..+-|..-..++++||..+.+|..+|.-  ...-..+|...+++|+...                   
T Consensus       188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da  265 (556)
T KOG3807|consen  188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA  265 (556)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence            3344456778888999999999999999999999887642  2222344555555444321                   


Q ss_pred             ----CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        178 ----PDSAA--AYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       178 ----p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                          ..+..  +...++.|-+.+|+..+|++.++...+-.|=
T Consensus       266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl  307 (556)
T KOG3807|consen  266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL  307 (556)
T ss_pred             hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence                11222  3356899999999999999999998887774

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=89.94  E-value=1.7  Score=30.60  Aligned_cols=62  Identities=10%  Similarity=0.153  Sum_probs=49.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCH
Q psy13481        153 RGQSYLQLSKPNACIRDCSVALKINPDSAA---AYKFRGRAYRLLGK-----------WEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       153 la~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~p~~  214 (231)
                      +|..++..|++-+|++..+..+...+++..   .+..-|.++..++.           .-.|+.+|.++..+.|+.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~   77 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS   77 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence            577889999999999999999999987764   44556777765553           345889999999999974

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.72  E-value=1.6  Score=34.18  Aligned_cols=57  Identities=11%  Similarity=0.022  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS----SALLYAKRGQSYLQLSKPNACIRD  169 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~Ai~~  169 (231)
                      ++...+.+|..|. ..|..+|+.+|.+++++.+.    +++.+..++.++.++|+++.|.-+
T Consensus       140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYiw  200 (203)
T PF11207_consen  140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYIW  200 (203)
T ss_pred             CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence            3556666665544 78999999999999998554    489999999999999999988543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.69  E-value=8.4  Score=30.17  Aligned_cols=97  Identities=15%  Similarity=0.074  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHH--HHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA---LLYAKRGQSYLQLSKPNACIRDCSVALKINPD-SAA--AYK  185 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~-~~~--~~~  185 (231)
                      .+...|.........+.. +.+....+.+..++.+.   -+-..+|..++..+++++|+..++.++..-.+ +..  +-.
T Consensus        52 ~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l  130 (207)
T COG2976          52 EASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL  130 (207)
T ss_pred             HHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence            355566666666666665 66777777777776553   23446789999999999999999999865433 333  557


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481        186 FRGRAYRLLGKWEEAAVDLRNACK  209 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~~al~  209 (231)
                      +++.+...+|.+++|++.+.....
T Consensus       131 RLArvq~q~~k~D~AL~~L~t~~~  154 (207)
T COG2976         131 RLARVQLQQKKADAALKTLDTIKE  154 (207)
T ss_pred             HHHHHHHHhhhHHHHHHHHhcccc
Confidence            899999999999999998875433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=89.66  E-value=2.3  Score=41.15  Aligned_cols=87  Identities=22%  Similarity=0.187  Sum_probs=62.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----CCHHHHHH
Q psy13481        128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL-----GKWEEAAV  202 (231)
Q Consensus       128 ~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~  202 (231)
                      .+.+|+..|++. .-.|.-+-=|...|.+|.++|+|.+-++++..|+...|.++..-...-.+.+.+     .+...|..
T Consensus       534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  612 (932)
T PRK13184        534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALV  612 (932)
T ss_pred             HHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466666666653 224444566888899999999999999999999999999987554443332222     23456777


Q ss_pred             HHHHHHhcCCCHH
Q psy13481        203 DLRNACKIDFDEQ  215 (231)
Q Consensus       203 ~~~~al~l~p~~~  215 (231)
                      +.--++.+-|...
T Consensus       613 ~~~~~~~~~~~~~  625 (932)
T PRK13184        613 FMLLALWIAPEKI  625 (932)
T ss_pred             HHHHHHHhCcccc
Confidence            8888888888744

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=89.52  E-value=8.3  Score=35.67  Aligned_cols=102  Identities=10%  Similarity=0.018  Sum_probs=76.6

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C-------------------HHHHHHHHHHH
Q psy13481        104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-------S-------------------ALLYAKRGQSY  157 (231)
Q Consensus       104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-------~-------------------~~~~~~la~~~  157 (231)
                      .|.+..--.+-.+..-|...+..+..++|..++.++++.-.+       .                   ..+.+..+.+.
T Consensus       292 ~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~  371 (608)
T PF10345_consen  292 SWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN  371 (608)
T ss_pred             eecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            444455445667777788888888888888888888865111       0                   12344567888


Q ss_pred             HHcCChHHHHHHHHHHHhhCC---C------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481        158 LQLSKPNACIRDCSVALKINP---D------SAAAYKFRGRAYRLLGKWEEAAVDLR  205 (231)
Q Consensus       158 ~~~~~~~~Ai~~~~~al~~~p---~------~~~~~~~lg~~~~~~g~~~~A~~~~~  205 (231)
                      +-++++..|...++.+.....   .      .+..++..|..+...|+.+.|...|.
T Consensus       372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            889999999999887776542   2      36788999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.44  E-value=2.3  Score=35.28  Aligned_cols=59  Identities=14%  Similarity=0.064  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481        149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA  207 (231)
Q Consensus       149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  207 (231)
                      .-+.-+.-....|++.+|...|..++...|.+..+...++.||...|+.+.|...+...
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l  194 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL  194 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence            34445667788999999999999999999999999999999999999999998887754

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=89.27  E-value=3.6  Score=33.34  Aligned_cols=61  Identities=11%  Similarity=0.047  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481        147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS------AAAYKFRGRAYRLLGKWEEAAVDLRNA  207 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~a  207 (231)
                      ......+|.-|+..|+|+.|+..|+.+.......      ..++..+..|+..+|+.+..+...-..
T Consensus       178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3455678999999999999999999997665432      346677888999999988877665443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG1839|consensus

Probab=89.25  E-value=0.88  Score=44.64  Aligned_cols=100  Identities=18%  Similarity=0.190  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVN------AYSEAI-KLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN------  177 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~------~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------  177 (231)
                      ..+...+..|......+.|.+|.+      +++... .++|..+..|..++.++.+++++++|+....++.-+.      
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            346677788888888899988888      555322 3488889999999999999999999999988876554      


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        178 --PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       178 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                        |+....|.+++...+..++...|+..+.++..+
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence              345568889999999999999999999988876

>KOG1914|consensus

Probab=89.19  E-value=4.3  Score=36.61  Aligned_cols=76  Identities=12%  Similarity=0.036  Sum_probs=67.9

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        137 SEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       137 ~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ++-|+.+|.+..+|+.+-.-+... .+++....|++.+...|..+.+|..........++|+.-.+.|.+++.-.-+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn   85 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN   85 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            677889999999999988766544 9999999999999999999999999999999999999999999999865444

>KOG2300|consensus

Probab=88.92  E-value=12  Score=33.44  Aligned_cols=109  Identities=19%  Similarity=0.149  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----------ALLYAKRGQSYLQLSKPNACIRDCSVALKINP----  178 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p----  178 (231)
                      +..-..+|..|...|+-+.-.+.++   .+.|.+          +.+++-.|...+..+++.+|...+.+.+++..    
T Consensus       404 a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~  480 (629)
T KOG2300|consen  404 AFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL  480 (629)
T ss_pred             HHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence            4444567888888776554443333   345542          56778889999999999999999999998761    


Q ss_pred             --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCHHHHHHHHhhc
Q psy13481        179 --DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID---FDEQADEWLKEVT  224 (231)
Q Consensus       179 --~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~l~~~~  224 (231)
                        -.+-.+..+|.+....|+..++....+-++.+.   ||....-|---+.
T Consensus       481 ~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~  531 (629)
T KOG2300|consen  481 NRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSIL  531 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHH
Confidence              123366778999999999999988877776653   5544444443333

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=88.72  E-value=2  Score=35.20  Aligned_cols=106  Identities=14%  Similarity=0.091  Sum_probs=73.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH-----------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHH
Q psy13481        123 AYNDGKFEDAVNAYSEAIKLNPSSAL-----------LYAKRGQSYLQLSKPNACIRDCSVALKINPDS------AAAYK  185 (231)
Q Consensus       123 ~~~~~~~~~Ai~~~~~al~~~p~~~~-----------~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~  185 (231)
                      ++..++.=.|+..|...+.-.|.+..           .++....++ ..-....|.+.++.|+.+.-.-      .-+.+
T Consensus         5 L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~-s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~   83 (368)
T COG5091           5 LYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWH-SDATMENAKELLDKALMTAEGRGDRSKIGLVNF   83 (368)
T ss_pred             hhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhh-cccChhhHHHHHHHHHHhhhccCCcceeeeehh
Confidence            44555666677777777777776632           222223222 2224567888889988775321      22557


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhhc
Q psy13481        186 FRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN  229 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~k  229 (231)
                      .++..|+...+|+.|..+|..|..+.-++....|..++..++.+
T Consensus        84 ~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~  127 (368)
T COG5091          84 RYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNK  127 (368)
T ss_pred             hhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhH
Confidence            78999999999999999999999998888777777777666543

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.68  E-value=3.2  Score=33.14  Aligned_cols=64  Identities=14%  Similarity=0.133  Sum_probs=55.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481        119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA  182 (231)
Q Consensus       119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~  182 (231)
                      -...+.+.+...+||...+.-++.+|.+......+-..+.-.|+|++|..-++-+-.+.|....
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~   70 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV   70 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence            4457788889999999999999999999888888888888999999999999999999887653

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.46  E-value=3.5  Score=26.89  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHH
Q psy13481        150 YAKRGQSYLQLSKPNACIRDCSVAL  174 (231)
Q Consensus       150 ~~~la~~~~~~~~~~~Ai~~~~~al  174 (231)
                      +..+|.-+-+.|++.+|+.+|+.++
T Consensus         9 ~a~~AVe~D~~gr~~eAi~~Y~~aI   33 (75)
T cd02682           9 YAINAVKAEKEGNAEDAITNYKKAI   33 (75)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3344444445555555555554443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.45  E-value=4.2  Score=32.54  Aligned_cols=58  Identities=21%  Similarity=0.252  Sum_probs=35.0

Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        156 SYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       156 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      -+++.+...+||...+.-++-+|.+......+-..+...|+|++|...++-+-.+.|.
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~   67 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ   67 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence            3445555566666666666666666665555666666666666666666666666655

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=88.21  E-value=4.3  Score=34.46  Aligned_cols=96  Identities=17%  Similarity=0.162  Sum_probs=73.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481        126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN--PDSAAAYKFRGRAYRLLGKWEEAAVD  203 (231)
Q Consensus       126 ~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~  203 (231)
                      .-+|..-..+|+-...+.| ++.+-.|++.+..+..-...++...+.....-  ....-.+..+|..+..+|+.++|...
T Consensus       309 dtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a  387 (415)
T COG4941         309 DTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA  387 (415)
T ss_pred             CCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence            3477777777777777776 66777788888888877888888887666542  23344667789999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHh
Q psy13481        204 LRNACKIDFDEQADEWLKE  222 (231)
Q Consensus       204 ~~~al~l~p~~~~~~~l~~  222 (231)
                      |.+++.+.++..-..++..
T Consensus       388 ydrAi~La~~~aer~~l~~  406 (415)
T COG4941         388 YDRAIALARNAAERAFLRQ  406 (415)
T ss_pred             HHHHHHhcCChHHHHHHHH
Confidence            9999999998665555543

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=88.20  E-value=2.3  Score=31.45  Aligned_cols=54  Identities=20%  Similarity=0.142  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy13481        146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEE  199 (231)
Q Consensus       146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  199 (231)
                      -......++...+..|+|.-|...++.++..+|+|..+...++.++..+|.-.+
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            356667788888999999999999999999999999999999999988875443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=87.94  E-value=2.5  Score=35.17  Aligned_cols=57  Identities=19%  Similarity=0.130  Sum_probs=50.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481        117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA  173 (231)
Q Consensus       117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~a  173 (231)
                      ...+..+...|.+.+|+.+.++++.++|=+...|..+-.++..+|+--.++..|++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            345677889999999999999999999999999999999999999988888887764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=87.71  E-value=9.4  Score=36.44  Aligned_cols=98  Identities=18%  Similarity=0.138  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS---------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA---  181 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~---  181 (231)
                      ......|..+....++.+|..+..++-..-+.         .+..-..+|.+....|+++.|+...+.++..-|.+.   
T Consensus       416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~  495 (894)
T COG2909         416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS  495 (894)
T ss_pred             hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence            33445667778889999999999888776444         145566679999999999999999999999887653   


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        182 --AAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       182 --~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                        .++...|.+....|++.+|..+.+.+.++.
T Consensus       496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a  527 (894)
T COG2909         496 RIVALSVLGEAAHIRGELTQALALMQQAEQMA  527 (894)
T ss_pred             hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence              377889999999999999999999998873

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=87.54  E-value=5  Score=32.52  Aligned_cols=61  Identities=10%  Similarity=0.022  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVAL  174 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al  174 (231)
                      ......|..++..|+|++|+.+|+.+.......      ..+...+..|...+|+.+..+..+-+.+
T Consensus       179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            445678999999999999999999997664322      5667788999999999988877765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=87.50  E-value=16  Score=33.75  Aligned_cols=101  Identities=13%  Similarity=0.039  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---
Q psy13481        110 IDKSNEKKREAIHAY-NDGKFEDAVNAYSEAIKLNPS--S----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD---  179 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~-~~~~~~~Ai~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~---  179 (231)
                      ..++.....+|..++ ...+++.|..++.+++.+...  .    ..+.+.++.++.+.+... |+..++++|+..-.   
T Consensus        56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~  134 (608)
T PF10345_consen   56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH  134 (608)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence            344788889998888 679999999999999988643  2    234556688888888777 99999999987654   


Q ss_pred             CHHHH-HHHH-HHHH-HcCCHHHHHHHHHHHHhcC
Q psy13481        180 SAAAY-KFRG-RAYR-LLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       180 ~~~~~-~~lg-~~~~-~~g~~~~A~~~~~~al~l~  211 (231)
                      +...| +.+- ..+. ..+++..|+..++....+.
T Consensus       135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a  169 (608)
T PF10345_consen  135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA  169 (608)
T ss_pred             hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence            22222 2222 2222 2379999999999888775

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=87.48  E-value=2  Score=38.18  Aligned_cols=96  Identities=10%  Similarity=0.085  Sum_probs=76.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy13481        119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWE  198 (231)
Q Consensus       119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  198 (231)
                      .+...-..|+|+.|...+..+=..-..-..+...+-...++++++..|.....-.+.-.-.++.+...-+..-..+|-++
T Consensus       329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d  408 (831)
T PRK15180        329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD  408 (831)
T ss_pred             HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence            34455567888888887766555444444566666777889999999999998888877788888887788888899999


Q ss_pred             HHHHHHHHHHhcCCCH
Q psy13481        199 EAAVDLRNACKIDFDE  214 (231)
Q Consensus       199 ~A~~~~~~al~l~p~~  214 (231)
                      ++...|.+.+.++|..
T Consensus       409 ~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        409 KSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHHHHhccCChh
Confidence            9999999999999854

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.30  E-value=1.3  Score=25.63  Aligned_cols=25  Identities=4%  Similarity=0.145  Sum_probs=22.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481        151 AKRGQSYLQLSKPNACIRDCSVALK  175 (231)
Q Consensus       151 ~~la~~~~~~~~~~~Ai~~~~~al~  175 (231)
                      +.+|.+|..+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5689999999999999999999995

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []

Probab=87.29  E-value=0.65  Score=22.66  Aligned_cols=16  Identities=25%  Similarity=0.567  Sum_probs=11.2

Q ss_pred             CCCCCHHHHHHHHHHH
Q psy13481          1 MSGLTPDAINKLQLFL   16 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~   16 (231)
                      |++|++++..+|.++|
T Consensus         7 mmPMSPddy~~l~~~V   22 (23)
T PF12162_consen    7 MMPMSPDDYDELERMV   22 (23)
T ss_dssp             ---S-HHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHhh
Confidence            7899999999999987

This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.

>KOG3617|consensus

Probab=86.95  E-value=6.6  Score=37.46  Aligned_cols=64  Identities=17%  Similarity=0.153  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHH----------HhhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy13481        147 ALLYAKRGQSYLQLSKPNACIRDCSVA----------LKINP----------DSAAAYKFRGRAYRLLGKWEEAAVDLRN  206 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~~~~Ai~~~~~a----------l~~~p----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~  206 (231)
                      -..|++.|..+...++.+.|+++|+++          |.-+|          .+...|.+.|.-+...|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            467888999999999999999999864          22233          3556788889999999999999999988


Q ss_pred             HHhc
Q psy13481        207 ACKI  210 (231)
Q Consensus       207 al~l  210 (231)
                      |-..
T Consensus       938 A~D~  941 (1416)
T KOG3617|consen  938 AKDY  941 (1416)
T ss_pred             hhhh
Confidence            8543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.83  E-value=11  Score=28.14  Aligned_cols=67  Identities=16%  Similarity=0.050  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .+.....+-...+++.++...+...-.+.|+.+..-..-|+.+...|+|.+|+..|+....-.+...
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p   78 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP   78 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence            3444455555688999999999888899999999999999999999999999999999988776644

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=86.11  E-value=3  Score=26.43  Aligned_cols=31  Identities=35%  Similarity=0.567  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL  142 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~  142 (231)
                      .+..+...|...=..|++.+|+.+|..++..
T Consensus         4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    4 KAIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3556667777777788888888888777654

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=85.96  E-value=1.9  Score=37.61  Aligned_cols=60  Identities=18%  Similarity=0.133  Sum_probs=53.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481        118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN  177 (231)
Q Consensus       118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~  177 (231)
                      .+..+|+..++.+-|+.+--+.|.++|....-+.+.|.|+..+.+|.+|.+.+..+.-+.
T Consensus       233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymy  292 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY  292 (569)
T ss_pred             HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678888999999999999999999999999999999999999999999888776543

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=85.28  E-value=7.2  Score=28.14  Aligned_cols=99  Identities=12%  Similarity=0.136  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHH----Hh
Q psy13481        115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---------------ALLYAKRGQSYLQLSKPNACIRDCSVA----LK  175 (231)
Q Consensus       115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~Ai~~~~~a----l~  175 (231)
                      .+...|..+++.+++-.++-+|++|+.+..+-               .....|+|..+...|+.+-.+++++-|    +.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            35568899999999999999999999863221               335668999999999999889888754    55


Q ss_pred             hCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481        176 INPDSAA-----AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV  223 (231)
Q Consensus       176 ~~p~~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~  223 (231)
                      +-|.-+.     ....+|.|-       .|   +-.-++..|+-.+.+.++.+
T Consensus        83 LiPQCp~~~C~afi~sLGCCk-------~A---Ll~F~KRHPNP~iA~~vq~i  125 (140)
T PF10952_consen   83 LIPQCPNTECEAFIDSLGCCK-------KA---LLDFMKRHPNPEIARLVQHI  125 (140)
T ss_pred             hccCCCCcchHHHHHhhhccH-------HH---HHHHHHhCCCHHHHHHHHhc
Confidence            5565332     244555543       22   33345667776655555443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.18  E-value=3.1  Score=21.24  Aligned_cols=29  Identities=14%  Similarity=0.034  Sum_probs=22.3

Q ss_pred             CChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        161 SKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       161 ~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      |+++.|...|++++...|.+...|.....
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            45677888888888888888888776554

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=84.41  E-value=27  Score=30.37  Aligned_cols=62  Identities=16%  Similarity=0.169  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHH--HHHHHHcCChHHHHHHHHHHHh
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA--LLYAKR--GQSYLQLSKPNACIRDCSVALK  175 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~--~~~~~l--a~~~~~~~~~~~Ai~~~~~al~  175 (231)
                      ......+..+++.++|..|...|..++..-|...  ..+..+  |..+...-+|.+|...+++.+.
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~  197 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK  197 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4566788899999999999999999998633333  344444  5555667789999999987765

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.91  E-value=3.5  Score=26.95  Aligned_cols=31  Identities=29%  Similarity=0.457  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL  142 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~  142 (231)
                      .+..+...|..+=+.|+|++|+.+|..+++.
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~   35 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL   35 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3556667777788888888888888887764

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1258|consensus

Probab=83.75  E-value=11  Score=34.36  Aligned_cols=83  Identities=11%  Similarity=-0.033  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q psy13481        130 EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR-GRAYRLLGKWEEAAVDLRNAC  208 (231)
Q Consensus       130 ~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al  208 (231)
                      ..+...|+..+...|....+|...|..-.++|.-+.++..|++++.--|.+...|..+ +.+.-..|+.+.-...|++|.
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~  141 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK  141 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            5566778888888898888899999999999999999999999998888777777554 344455667777777778777


Q ss_pred             hcCC
Q psy13481        209 KIDF  212 (231)
Q Consensus       209 ~l~p  212 (231)
                      ....
T Consensus       142 ~~vG  145 (577)
T KOG1258|consen  142 SYVG  145 (577)
T ss_pred             Hhcc
Confidence            7653

>PF07939 DUF1685: Protein of unknown function (DUF1685); InterPro: IPR012881 The members of this family are hypothetical eukaryotic proteins of unknown function

Probab=83.64  E-value=2.9  Score=26.10  Aligned_cols=41  Identities=20%  Similarity=0.364  Sum_probs=28.2

Q ss_pred             CCHHHHHHHHHHHHHH------hhCCCCCCh-hhhhhHHHHHHHcCCC
Q psy13481          4 LTPDAINKLQLFLGAV------KKNPAIFYL-PELKFFKDFVESYGGT   44 (231)
Q Consensus         4 ~~~~~~~~~~~~~~~~------~~~p~~l~~-~~~~~~~~~~~~~g~~   44 (231)
                      +|++++++||++|++-      +.+|.+... |.|.++-..-..+...
T Consensus         1 lTd~dldELkGc~dLGFgF~~~~~~p~L~~tlPaL~lyyavn~q~~~~   48 (64)
T PF07939_consen    1 LTDDDLDELKGCIDLGFGFDEEDLDPRLCDTLPALELYYAVNRQYSDH   48 (64)
T ss_pred             CcHhHHHHHhhhhhhccccCccccChHHHhhhHHHHHHHHHHHHhccc
Confidence            5789999999999974      344555433 6677776665555544

The region in question is approximately 100 amino acid residues long.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.46  E-value=14  Score=32.92  Aligned_cols=30  Identities=23%  Similarity=0.128  Sum_probs=26.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481        179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNAC  208 (231)
Q Consensus       179 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  208 (231)
                      ++..-|..+|......|+++-|..+|+++-
T Consensus       345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  345 DDPEKWKQLGDEALRQGNIELAEECYQKAK  374 (443)
T ss_dssp             STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence            477899999999999999999999998874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=83.34  E-value=13  Score=33.86  Aligned_cols=92  Identities=20%  Similarity=0.156  Sum_probs=74.7

Q ss_pred             HHcCCHHH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy13481        124 YNDGKFED-AVNAYSEAIKLNPSSALLYAK--RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA  200 (231)
Q Consensus       124 ~~~~~~~~-Ai~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  200 (231)
                      +..+.... ++..+...+.+++.+...+..  +...+...+....++-.+..++..+|.+..++.++|.+....|....+
T Consensus        41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~  120 (620)
T COG3914          41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA  120 (620)
T ss_pred             hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence            33444444 788888888888888776443  588888899999999999999999999999999999999888887777


Q ss_pred             HHHHHH-HHhcCCCHH
Q psy13481        201 AVDLRN-ACKIDFDEQ  215 (231)
Q Consensus       201 ~~~~~~-al~l~p~~~  215 (231)
                      ...+.. +....|++.
T Consensus       121 ~~~~~~~a~~~~~~~~  136 (620)
T COG3914         121 LADISEIAEWLSPDNA  136 (620)
T ss_pred             HHHHHHHHHhcCcchH
Confidence            776666 888888754

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=82.74  E-value=7.6  Score=28.03  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481        150 YAKRGQSYLQLSKPNACIRDCSVALKINPD---------------SAAAYKFRGRAYRLLGKWEEAAVDLRNACK  209 (231)
Q Consensus       150 ~~~la~~~~~~~~~~~Ai~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  209 (231)
                      +..+|...++.+++-.+|-+|++|+.+--+               .....++++..++.+|+-+-.+++++-|.+
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE   78 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE   78 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence            556788888999999999999988865421               123568999999999999999999987754

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.75  E-value=4.3  Score=26.60  Aligned_cols=30  Identities=30%  Similarity=0.599  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL  142 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~  142 (231)
                      +..+...|...=..|+|++|+.+|.++|..
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            556666777777778888777777766653

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG2041|consensus

Probab=81.68  E-value=10  Score=35.56  Aligned_cols=85  Identities=12%  Similarity=0.080  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ...-.++...|..+.....|++|.++|.+.-.        .-+...|+++++.|.+    ++.....-|.+...+-.+|.
T Consensus       793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~  860 (1189)
T KOG2041|consen  793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMAD  860 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHH
Confidence            33456777888888888888888888876532        2345667777777655    45555666777777777777


Q ss_pred             HHHHcCCHHHHHHHHHH
Q psy13481        190 AYRLLGKWEEAAVDLRN  206 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~  206 (231)
                      ++...|.-++|..+|.+
T Consensus       861 mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  861 MFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHhhchHHHHHHHHHh
Confidence            77777777777766654

>KOG2758|consensus

Probab=81.41  E-value=7.1  Score=33.00  Aligned_cols=80  Identities=15%  Similarity=0.071  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH--HHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481        132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCS--VALKINP--DSAAAYKFRGRAYRLLGKWEEAAVDLRNA  207 (231)
Q Consensus       132 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~--~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  207 (231)
                      -+.++++--...|+....++..|...+..|+|..|-.++=  +++.-+|  ++..+++..-..-..+.+|+.|++.+.+.
T Consensus       114 ~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rL  193 (432)
T KOG2758|consen  114 NLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRL  193 (432)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3445555555577778889999999999999988876644  3333333  34555555555667778899999988877


Q ss_pred             HhcC
Q psy13481        208 CKID  211 (231)
Q Consensus       208 l~l~  211 (231)
                      -+.-
T Consensus       194 re~I  197 (432)
T KOG2758|consen  194 REYI  197 (432)
T ss_pred             HHHH
Confidence            6653

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.40  E-value=23  Score=27.45  Aligned_cols=97  Identities=15%  Similarity=0.039  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHcCChHHHHHHHHHH-HhhCCCCHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS--S--ALLYAKRGQSYLQLSKPNACIRDCSVA-LKINPDSAAAYKFR  187 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~--~--~~~~~~la~~~~~~~~~~~Ai~~~~~a-l~~~p~~~~~~~~l  187 (231)
                      ..+.+..|.+..+.|+...|+..|.++-+-.|-  -  -.+...-|.++...|-|++.....+.. -..+|--..+.--|
T Consensus        94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL  173 (221)
T COG4649          94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL  173 (221)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence            455667788888889999999999987665442  1  123344567777788888766555432 33445555677789


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACK  209 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~  209 (231)
                      |.+-++.|++..|...|.+...
T Consensus       174 glAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         174 GLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hHHHHhccchHHHHHHHHHHHc
Confidence            9999999999999999998876

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=81.40  E-value=36  Score=30.40  Aligned_cols=92  Identities=12%  Similarity=0.046  Sum_probs=58.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHH
Q psy13481        123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS--AAAYKFRGRAYRLLGKWEEA  200 (231)
Q Consensus       123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A  200 (231)
                      +...|++.-|-..|+-.+...|+++..-+..-..+...++-..|...|++++..-...  ...|-.+-.--..-|+...+
T Consensus       442 ~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v  521 (660)
T COG5107         442 YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNV  521 (660)
T ss_pred             HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHH
Confidence            4456777777777777777777777776666677777777777777777766554333  23344443444455666666


Q ss_pred             HHHHHHHHhcCCCH
Q psy13481        201 AVDLRNACKIDFDE  214 (231)
Q Consensus       201 ~~~~~~al~l~p~~  214 (231)
                      ...=++-..+.|..
T Consensus       522 ~sLe~rf~e~~pQe  535 (660)
T COG5107         522 YSLEERFRELVPQE  535 (660)
T ss_pred             HhHHHHHHHHcCcH
Confidence            66556666666654

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.00  E-value=12  Score=32.93  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HH--------HHHHHHHHHH-HcCC-----hHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS--------AL--------LYAKRGQSYL-QLSK-----PNACIR  168 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~--------~~--------~~~~la~~~~-~~~~-----~~~Ai~  168 (231)
                      .........|..++..|+|.+|+..|+.+|..-|-.        ..        --|-+|...- ..+.     .++..+
T Consensus       202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR  281 (422)
T PF06957_consen  202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKR  281 (422)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH
Confidence            334556678999999999999999999999762211        01        1122232221 1111     122223


Q ss_pred             HHHHHHh-----hCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhh
Q psy13481        169 DCSVALK-----INPDSAAAYKFRG-RAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNK  227 (231)
Q Consensus       169 ~~~~al~-----~~p~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~  227 (231)
                      .++-+.-     +.|.|...-.+.| ...++.++|.-|..+-++.+++.|.....+..+++....
T Consensus       282 ~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~  346 (422)
T PF06957_consen  282 NLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQAC  346 (422)
T ss_dssp             HHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            3333322     2233322222223 346788999999999999999999865555555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=80.74  E-value=9.1  Score=29.56  Aligned_cols=50  Identities=14%  Similarity=0.222  Sum_probs=43.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481        128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP  178 (231)
Q Consensus       128 ~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p  178 (231)
                      .....++..++.+...| ++..+.+++.++...|+.++|.....++..+.|
T Consensus       126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            34455666777777788 789999999999999999999999999999999

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG2422|consensus

Probab=80.70  E-value=46  Score=30.54  Aligned_cols=98  Identities=15%  Similarity=-0.048  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCChHHHHHHHHHHH-----hhCCCCHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-SALL-YAKRGQSYLQLSKPNACIRDCSVAL-----KINPDSAAAYK  185 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-~~~~-~~~la~~~~~~~~~~~Ai~~~~~al-----~~~p~~~~~~~  185 (231)
                      ..+++..-..+.++|-|..|.+..+-.+.++|. ++-+ .+.+-...++..+|+--|..++..-     ..-|+.+   |
T Consensus       342 yL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~---y  418 (665)
T KOG2422|consen  342 YLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG---Y  418 (665)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch---H
Confidence            344445555566789999999999999999998 6544 3444445556677888888777663     3334433   4


Q ss_pred             HHHHH--HHHcCC---HHHHHHHHHHHHhcCCC
Q psy13481        186 FRGRA--YRLLGK---WEEAAVDLRNACKIDFD  213 (231)
Q Consensus       186 ~lg~~--~~~~g~---~~~A~~~~~~al~l~p~  213 (231)
                      .++.+  |.....   -+.|..++.+|+++.|.
T Consensus       419 S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  419 SLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            44444  444443   56799999999999984

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.30  E-value=4.4  Score=26.45  Aligned_cols=31  Identities=26%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL  142 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~  142 (231)
                      .+..+...|...=..|+|++|+.+|..+++.
T Consensus         5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~   35 (75)
T cd02680           5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL   35 (75)
T ss_pred             HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence            3455566666666677777777777777764

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	231
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		2e-08
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		1e-06
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		1e-06
1wao_1	477	Pp5 Structure Length = 477		2e-06
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		2e-06
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		5e-06
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		7e-06
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		1e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		3e-05
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		3e-05
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		9e-05
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		1e-04
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		3e-04
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		5e-04
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		5e-04
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		5e-04
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		6e-04

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 56/110 (50%)
Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA 165
           SEED  ++   K E         FE AV+ Y +AI+LNP++A+ +  R  +Y +L     
Sbjct: 5   SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG 64
Query: 166 CIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
            ++DC  A+ I+P  + AY   G A   L K  EA    + A ++D D +
Sbjct: 65  AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187
           K+ +A   Y  AI  NP  A+ Y  R   YL++ +P   + DC  AL+++  S  A+ F 
Sbjct: 19  KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78
Query: 188 GRAYRLLGKWEEAAVDLRNA 207
           G+    +  ++EA  +L+ A
Sbjct: 79  GQCQLEMESYDEAIANLQRA 98

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
           +++ NE K +   A + G  +DA+  YSEAIKL+P + +LY+ R  +Y +         D
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEA 200
               + + PD    Y  +  A   L ++EEA
Sbjct: 61  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 91

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
           + ++ E K +A   +    +E+A+  YS+AI+LNPS+A+ Y  R  +YL+       + D
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
            + A++++      Y  R  +   LGK+  A  D     K+
Sbjct: 63  ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%)
Query: 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV 172
           + E K +    +   K+ +A   Y  AI  NP  A+ Y  R   YL++ +P   + DC  
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
           AL+++  S  A+ F G+    +  ++EA  +L+ A
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
           + ++ E K +A   +    +E+A+  YS+AI+LNPS+A+ Y  R  +YL+       + D
Sbjct: 10  LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 69
Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
            + A++++      Y  R  +   LGK+  A  D     K+
Sbjct: 70  ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
           K +    +  G +  A+  Y+EAIK NP  A LY+ R   Y +L +    ++DC   +++
Sbjct: 20  KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79
Query: 177 NPDSAAAYKFRGRAYRLLGKWEEA------AVDLRNACK 209
            P     Y  +  A   +  + +A      A+DL ++CK
Sbjct: 80  EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
           H +    F +A+  Y  AI+L+P+  + Y+     Y+        I   + AL+I PD +
Sbjct: 30  HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS 89
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRN-ACKIDFDEQADEWLKEVTPNKLNLK 231
            A   R  A   LG + +A  DL   +   DFD  + E + E   NK  +K
Sbjct: 90  KALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMK 140

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
           K    H +    F +A+  Y  AI+L+P+  + Y+     Y+        I   + AL+I
Sbjct: 29  KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI 88
Query: 177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRN-ACKIDFDEQADEWLKEVTPNKLNLK 231
            PD + A   R  A   LG + +A  DL   +   DFD  + E + E   NK  +K
Sbjct: 89  KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMK 144

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
           Y  G +++A+  Y +A++L+P SA  +   G +Y +    +  I     AL+++P SA A
Sbjct: 12  YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
           +   G AY   G ++EA    + A ++D
Sbjct: 72  WYNLGNAYYKQGDYDEAIEYYQKALELD 99

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
           Y  G +++A+  Y +A++L+P++A  +   G +Y +    +  I     AL+++P++A A
Sbjct: 20  YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
           +   G AY   G ++EA    + A ++D
Sbjct: 80  WYNLGNAYYKQGDYDEAIEYYQKALELD 107

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL----SKPNACIRDCSVALKINPDSA 181
           DG++ DA + Y   +K  PS A    +  +          KP   IR CS  L++ PD+ 
Sbjct: 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNV 329
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNA 207
            A K R  AY +   ++EA  D   A
Sbjct: 330 NALKDRAEAYLIEEMYDEAIQDYETA 355

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 101 TDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL 160
           TD  ++E+D+  +         AY    FE A   Y +AI+L+PS+   Y  +   Y + 
Sbjct: 5   TDAAIAEKDLGNA---------AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE 55
Query: 161 SKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG 195
            K   C++ C  A+++  ++ A YK   +A    G
Sbjct: 56  KKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP 163
           E+++E+ +K NE        +  G +  A+  Y+EA+K +P +A+LY+ R     +L + 
Sbjct: 11  ELAQEEKNKGNE-------YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 164 NACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLK 221
              + DC   ++++      Y  +      + +W +A     +A ++D  +E+A E ++
Sbjct: 64  QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL----SKPNACIRDCSVALKINPDSA 181
           DG++ DA + Y    K  PS A    +  +          KP   IR CS  L+  PD+ 
Sbjct: 270 DGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQXEPDNV 329
Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNA 207
            A K R  AY +   ++EA  D   A
Sbjct: 330 NALKDRAEAYLIEEXYDEAIQDYETA 355

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           GK ++A+  Y EAI+++P+ A  Y+  G +  ++      ++  + A++INP  A A+  
Sbjct: 57  GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFD 213
               ++  G   EA    R A K+  D
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPD 143

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
           Y  G ++ A+  Y +A++L+P++A  + +RG +Y +       I D   AL+++P++A A
Sbjct: 54  YKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113
Query: 184 YKFRGRAYRLLG 195
            +  G A +  G
Sbjct: 114 KQNLGNAKQKQG 125

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL----SKPNACIRDCSVALKINPDS 180
            DG++ DA + Y    K  PS A    +  +          KP   IR CS  L+  PD+
Sbjct: 246 RDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQXEPDN 305
Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNA 207
             A K R  AY +   ++EA  D   A
Sbjct: 306 VNALKDRAEAYLIEEXYDEAIQDYEAA 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	9e-29
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-28
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-27
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-27
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-08
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-26
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-26
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	5e-26
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-06
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-25
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-25
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-12
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-21
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-21
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-20
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	9e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-10
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-08
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	7e-17
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	8e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-16
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-14
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-14
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-12
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	8e-04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-15
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-15
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-11
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-14
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-15
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	4e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-12
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	6e-11
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	7e-11
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-10
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-09
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-09
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	7e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-05
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	1e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	7e-05
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	8e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-04

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  105 bits (264), Expect = 9e-29
 Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 1/124 (0%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS 161
           D   ++  + ++ E K +A   +    +E+A+  YS+AI+LNPS+A+ Y  R  +YL+  
Sbjct: 2   DEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE 61

Query: 162 KPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWL 220
                + D + A++++      Y  R  +   LGK+  A  D     K+   D+ A    
Sbjct: 62  CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121

Query: 221 KEVT 224
           +E  
Sbjct: 122 QECN 125

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  103 bits (258), Expect = 3e-28
 Identities = 27/109 (24%), Positives = 51/109 (46%)

Query: 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNAC 166
                 + E K +    +   K+ +A   Y  AI  NP  A+ Y  R   YL++ +P   
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62

Query: 167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
           + DC  AL+++  S  A+ F G+    +  ++EA  +L+ A  +  +++
Sbjct: 63  LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  105 bits (262), Expect = 2e-27
 Identities = 27/107 (25%), Positives = 52/107 (48%)

Query: 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC 170
             + E K +    +   K+ +A   Y  AI  NP  A+ Y  R   YL++ +P   + DC
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

Query: 171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQAD 217
             AL+++  S  A+ F G+    +  ++EA  +L+ A  +  +++ +
Sbjct: 62  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 99.2 bits (248), Expect = 7e-27
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP 163
             S  + D +   K +    +  G +  A+  Y+EAIK NP  A LY+ R   Y +L + 
Sbjct: 7   HHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF 66

Query: 164 NACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKE 222
              ++DC   +++ P     Y  +  A   +  + +A    + A  +D   ++A +  + 
Sbjct: 67  QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126

Query: 223 VT 224
             
Sbjct: 127 CM 128

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 11/66 (16%), Positives = 23/66 (34%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
            +F+ A+    E I+L P+    Y ++  +   +      +     AL ++     A   
Sbjct: 64  LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

Query: 187 RGRAYR 192
             R   
Sbjct: 124 YQRCMM 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 98.8 bits (247), Expect = 1e-26
 Identities = 35/108 (32%), Positives = 54/108 (50%)

Query: 104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP 163
             SEED  ++   K E         FE AV+ Y +AI+LNP++A+ +  R  +Y +L   
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62

Query: 164 NACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
              ++DC  A+ I+P  + AY   G A   L K  EA    + A ++D
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD 110

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 99.4 bits (248), Expect = 2e-26
 Identities = 20/126 (15%), Positives = 53/126 (42%)

Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA 165
           S     +S++ K E   A    ++  A++ Y++A+ + P++ +  + R  +Y    +   
Sbjct: 4   SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEK 63

Query: 166 CIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTP 225
              D  +A  ++P  + A+   G A   +  ++ A        + + +  +D   + +  
Sbjct: 64  AAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123

Query: 226 NKLNLK 231
            K  ++
Sbjct: 124 TKRKIE 129

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 97.7 bits (244), Expect = 2e-26
 Identities = 24/125 (19%), Positives = 60/125 (48%), Gaps = 1/125 (0%)

Query: 101 TDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL 160
           ++  ++  + + + E+K +    +  G +  A+  Y+EA+K +P +A+LY+ R     +L
Sbjct: 1   SNARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL 60

Query: 161 SKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEW 219
            +    + DC   ++++      Y  +      + +W +A     +A ++D  +E+A E 
Sbjct: 61  MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

Query: 220 LKEVT 224
           ++   
Sbjct: 121 VRNCL 125

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 97.0 bits (242), Expect = 5e-26
 Identities = 28/112 (25%), Positives = 49/112 (43%)

Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCS 171
           K+ E + E    +    + +AV AY+E IK  P  A  Y+ R  +  +L      I DC+
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62

Query: 172 VALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223
            A++ +P+   AY  +  A   + ++  A   L  A   D +       +E+
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 8/64 (12%), Positives = 25/64 (39%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
             F +A+   ++AI+ +P+    Y ++  + + + +  + +     A   + +       
Sbjct: 52  MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111

Query: 187 RGRA 190
           R   
Sbjct: 112 REID 115

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 95.7 bits (239), Expect = 1e-25
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
           +++ NE K +   A + G  +DA+  YSEAIKL+P + +LY+ R  +Y +         D
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60

Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKEV 223
               + + PD    Y  +  A   L ++EEA        K +  + Q  E L+ +
Sbjct: 61  GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 95.8 bits (239), Expect = 1e-25
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA 165
           S    D +  +K     AY    FE A   Y +AI+L+PS+   Y  +   Y +  K   
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60

Query: 166 CIRDCSVALKINPDSAAAYKF-------RGRAYRLLGKWEEAAVDLRNACKIDFDEQADE 218
           C++ C  A+++  ++ A YK         G A++       A      +     D +  +
Sbjct: 61  CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120

Query: 219 WLKEV 223
            +KE+
Sbjct: 121 KVKEL 125

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 95.1 bits (237), Expect = 6e-25
 Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 5/144 (3%)

Query: 85  GVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP 144
           G           P        +        + ++E    +  G +  A+ AY++A+ L+ 
Sbjct: 1   GSSGSSGMTVSGPGTPEP-RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA 59

Query: 145 SS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201
           +    A+L+  R   +L+L   +    + S A++ +     A   R +A   LG+ ++A 
Sbjct: 60  TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV 119

Query: 202 VDLRNACKID-FDEQADEWLKEVT 224
           +DL+    ++  ++   E L+ ++
Sbjct: 120 LDLQRCVSLEPKNKVFQEALRNIS 143

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 95.9 bits (239), Expect = 3e-23
 Identities = 22/105 (20%), Positives = 44/105 (41%)

Query: 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNAC 166
            + +    +           G+  DA++ +  A+  +P + + Y +R   +L + K  A 
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79

Query: 167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           + D +  +++  D  AA   RG      GK +EA  D +   K +
Sbjct: 80  LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 89.0 bits (221), Expect = 9e-21
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA----LLYAKRGQSYLQLSKPNACI 167
           K N+    A     DG++ DA + Y   +K  PS A        +    + +  KP   I
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315

Query: 168 RDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           R CS  L++ PD+  A K R  AY +   ++EA  D   A + +
Sbjct: 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 83.2 bits (206), Expect = 8e-19
 Identities = 22/103 (21%), Positives = 46/103 (44%)

Query: 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIR 168
             D+    + +A++A+  G +  A+    + +++    A L   R + +++  +P   I 
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198

Query: 169 DCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           D   A K+  D+  A+      Y  LG  E +  ++R   K+D
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 70.9 bits (174), Expect = 1e-14
 Identities = 19/92 (20%), Positives = 38/92 (41%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
             D K  +A+   SE +++ P +      R ++YL     +  I+D   A + N +    
Sbjct: 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
            +   +A RLL + ++         K +  +Q
Sbjct: 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G+   A++    A KL   +   + K    Y QL      + +    LK++ D    +  
Sbjct: 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250

Query: 187 RGRAYRL------------LGKWEEAAVDLRNACKID 211
             +  +L             G++ +A     +  K +
Sbjct: 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 16/104 (15%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYA------------KRGQSYLQLSKPNACIRDCS 171
           Y  G  E +++   E +KL+      +A            +  +  ++  +         
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281

Query: 172 VALKINPDSAA----AYKFRGRAYRLLGKWEEAAVDLRNACKID 211
             +K  P  A     + +     +    K  EA        +++
Sbjct: 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 15/100 (15%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           GK + A+   ++ I+L         +RG   L+  K +    D    LK NP      + 
Sbjct: 74  GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133

Query: 187 ---------------RGRAYRLLGKWEEAAVDLRNACKID 211
                          +       G +  A   L    ++ 
Sbjct: 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 11/88 (12%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
             +  +  ++    + ++            G+  L   +    +     A+  +PD+  A
Sbjct: 14  GTENLYFQSMADVEKHLE-----------LGKKLLAAGQLADALSQFHAAVDGDPDNYIA 62

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
           Y  R   +  +GK + A  DL    ++ 
Sbjct: 63  YYRRATVFLAMGKSKAALPDLTKVIQLK 90

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 12/95 (12%), Positives = 32/95 (33%), Gaps = 18/95 (18%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPN--------ACIRDCS---- 171
             +  +++A+  Y  A + N +   +     ++   L +             R+      
Sbjct: 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399

Query: 172 ------VALKINPDSAAAYKFRGRAYRLLGKWEEA 200
                 +AL+ +PD+    + + +A +       A
Sbjct: 400 IKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 90.8 bits (226), Expect = 1e-21
 Identities = 22/97 (22%), Positives = 41/97 (42%)

Query: 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVAL 174
           +           G+  DA++ +  A+  +P + + Y +R   +L + K  A + D +  +
Sbjct: 5   KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 64

Query: 175 KINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
            +  D  AA   RG      GK +EA  D +   K +
Sbjct: 65  ALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 90.8 bits (226), Expect = 1e-21
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA----LLYAKRGQSYLQLSKPNACI 167
           K N+    A     DG++ DA + Y   +K  PS A        +    + +  KP   I
Sbjct: 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292

Query: 168 RDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           R CS  L++ PD+  A K R  AY +   ++EA  D   A + +
Sbjct: 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 84.6 bits (210), Expect = 2e-19
 Identities = 22/104 (21%), Positives = 46/104 (44%)

Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
            D+    + +A+ A++   +  A+    + +++    A L   R + +++  +P   I D
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 176

Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
              A K+  D+  A+      Y  LG  E +  ++R   K+D D
Sbjct: 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 72.3 bits (178), Expect = 4e-15
 Identities = 17/76 (22%), Positives = 34/76 (44%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
             D K  +A+   SE +++ P +      R ++YL     +  I+D   A + N +    
Sbjct: 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342

Query: 184 YKFRGRAYRLLGKWEE 199
            +   +A RLL + ++
Sbjct: 343 REGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 15/100 (15%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQ---------------SYLQLSKPNACIRDCS 171
           GK ++A + + + +K NPS         Q                    +   A I    
Sbjct: 85  GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLD 144

Query: 172 VALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
             L++    A   + R   +   G+  +A  DL+ A K+ 
Sbjct: 145 KILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 184

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.5 bits (168), Expect = 9e-14
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G+   A++    A KL   +   + K    Y QL      + +    LK++ D    +  
Sbjct: 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227

Query: 187 RGRAYRL------------LGKWEEAAVDLRNACKID 211
             +  +L             G++ +A     +  K +
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 16/104 (15%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYA------------KRGQSYLQLSKPNACIRDCS 171
           Y  G  E +++   E +KL+      +A            +  +  ++  +         
Sbjct: 199 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258

Query: 172 VALKINPDSAA----AYKFRGRAYRLLGKWEEAAVDLRNACKID 211
             +K  P  A     + +     +    K  EA        +++
Sbjct: 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.4 bits (155), Expect = 5e-12
 Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 15/100 (15%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           GK + A+   ++ I L         +RG   L+  K +    D    LK NP      + 
Sbjct: 51  GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110

Query: 187 RGR---------------AYRLLGKWEEAAVDLRNACKID 211
             +                      +  A   L    ++ 
Sbjct: 111 ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 85.4 bits (212), Expect = 1e-21
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCS 171
           ++ ++K     AY    F+ A+  Y +A +L+P++      +   Y +    N C   C 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 172 VALKINPDSAA-------AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223
            A+++  ++         AY   G +Y    K+++A      +          +  ++ 
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 85.1 bits (211), Expect = 1e-21
 Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 2/112 (1%)

Query: 110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
           + +  ++K +    +  G + +AV+ Y + I   P + + Y+ +  + ++L +    I+ 
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60

Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221
           C   L+    +          YR L   + A   ++     + DE  + + +
Sbjct: 61  CQQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVV-EVDELPEGYDR 110

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 85.3 bits (212), Expect = 3e-20
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
           + E   +  +       E                 + +AV AY+E IK  P  A  Y+ R
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
             +  +L      I DC+ A++ +P+   AY  +  A   + ++  A   L  A   D
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 81.4 bits (202), Expect = 8e-19
 Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 3/103 (2%)

Query: 117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
           K E    Y   +F++A+  Y++A +L+     L   R  +  +  +    I   + A++ 
Sbjct: 9   KAEGNKFYKARQFDEAIEHYNKAWELHKDITYLN-NRAAAEYEKGEYETAISTLNDAVEQ 67

Query: 177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
             +  A YK   +++  +G       DL+    I++ +++   
Sbjct: 68  GREMRADYKVISKSFARIGNAYHKLGDLKKT--IEYYQKSLTE 108

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 71.0 bits (175), Expect = 5e-15
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYNDG-------KFEDAVNAYSEAIKLNPSSALLYAKRG 154
           +      D+ K+ E  ++++  +            E  +        +NP  A      G
Sbjct: 87  NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146

Query: 155 QSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           + Y   S     ++  +  +K  P+ A  Y  R  A   L  + EA  D   A + D
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 68.0 bits (167), Expect = 7e-14
 Identities = 14/96 (14%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
           Y  G++E A++  ++A++        Y    +S+ ++      + D    ++    S   
Sbjct: 49  YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
           ++        L   E+          ++  E+A+E 
Sbjct: 109 HR-TADILTKLRNAEKELKKAEAEAYVN-PEKAEEA 142

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 61.8 bits (151), Expect = 9e-12
 Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 123 AYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
           A      F +A+   ++AI+ +P+    Y ++  + + + +  + +     A   + +  
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241

Query: 182 AAYKFRGRAYRLLGKWE 198
                R          +
Sbjct: 242 NGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 144 PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVD 203
            S A      G  + +  + +  I   + A +++ D       R  A    G++E A   
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAIST 60

Query: 204 LRNACKID 211
           L +A +  
Sbjct: 61  LNDAVEQG 68

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 86.3 bits (214), Expect = 1e-19
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 2/143 (1%)

Query: 91  DEEEPIPDVATDIEVSEEDIDK-SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALL 149
                 PD+A    +S       + + K    H +    F +A+  Y  AI+L+P+  + 
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
           Y+     Y+        I   + AL+I PD + A   R  A   LG + +A  DL     
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSL 121

Query: 210 I-DFDEQADEWLKEVTPNKLNLK 231
             DFD  + E + E   NK  +K
Sbjct: 122 NGDFDGASIEPMLERNLNKQAMK 144

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 76.7 bits (189), Expect = 2e-16
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 9/118 (7%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
           ++  ++  + +S        ++Y             ++    + +A+ LNP     Y  R
Sbjct: 258 NLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR 316

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           GQ Y  L        D   A  +NP++   Y          GK+ E+           
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 75.1 bits (185), Expect = 6e-16
 Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 8/118 (6%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
           + +   +   K+ +   E    Y            +++A   + +A  LNP +   Y + 
Sbjct: 291 NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
                +  K        +      P       F        G ++ A      A +++
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYA----KRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
           G   +     ++   L+PS    YA     RG  +      N  I+    A++++P+   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKID 211
            Y      Y   G  E+       A +I 
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIK 89

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 66.7 bits (163), Expect = 4e-13
 Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 24/137 (17%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
               SE   +++  K                  G F+ A+  Y  A +L      ++   
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418

Query: 154 G----------------QSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKW 197
           G                 + L   K NA I+  + A +++P S  A     +    + K 
Sbjct: 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478

Query: 198 EEAAVDLRNACKIDFDE 214
           +EA     ++  +    
Sbjct: 479 DEAIELFEDSAILARTM 495

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 24/134 (17%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
           D + ++ED  K+     E ++ Y          GKF ++   ++E     P+   +    
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG----------------RAYRLLGKW 197
            +        +  I+   +A ++       +   G                       K+
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 198 EEAAVDLRNACKID 211
             A   L  AC++D
Sbjct: 445 NAAIKLLTKACELD 458

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 15/147 (10%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 65  PEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAY 124
           P  ++        D  L+ + V +  + +     ++  ++      D+      + +   
Sbjct: 162 PSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT-K 220

Query: 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184
           +   +   ++A +    L  ++AL     G  +   +           ++ ++P    +Y
Sbjct: 221 STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSY 279

Query: 185 KFRGRAYRLLGKWEEAAVDLRNACKID 211
            F           +E     + A  ++
Sbjct: 280 IFLALTLADKENSQEFFKFFQKAVDLN 306

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177
            +     ++ KF  A+   ++A +L+P S        Q  LQ+ K +  I     +  + 
Sbjct: 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492

Query: 178 PDSAAAYKFRGRAYRLLGKWEEA 200
                  +     +    K ++ 
Sbjct: 493 RTMDEKLQ--ATTFAEAAKIQKR 513

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 13/95 (13%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYL--QLSKPNACIRDCSVALKINPDSA 181
                ++ A    S+A++   S+           L       ++ +   +V   +  ++A
Sbjct: 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243

Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQA 216
            A  + G  + L     +A V L+ +  +     +
Sbjct: 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNS 278

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 17/103 (16%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
               + + + K+ E    +  A            K ++A+  + ++  L  +       +
Sbjct: 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL--Q 500

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK 196
             ++ + +K           L+ +P  +A  +     YR  G 
Sbjct: 501 ATTFAEAAKIQK-------RLRADPIISAKMELTLARYRAKGM 536

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 85.5 bits (212), Expect = 2e-19
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIR 168
            + ++ E K +A   +    +E+A+  YS+AI+LNPS+A+ Y  R  +YL+       + 
Sbjct: 2   ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 61

Query: 169 DCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKEVT 224
           D + A++++      Y  R  +   LGK+  A  D     K+   D+ A    +E  
Sbjct: 62  DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 118

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 83.0 bits (206), Expect = 8e-19
 Identities = 23/94 (24%), Positives = 39/94 (41%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           A   Y  G FE A     +  +  P +  +       + Q  + +      ++A+K NP 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
            A AY   G  Y+  G+ +EA    R+A ++  D
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 21/91 (23%), Positives = 35/91 (38%)

Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
            +   + + + +  + AIK NP  A  Y+  G  Y +  +    I     AL++ PD   
Sbjct: 43  HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID 102

Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
            Y     A    G  E A     +A + + D
Sbjct: 103 GYINLAAALVAAGDMEGAVQAYVSALQYNPD 133

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 17/85 (20%), Positives = 35/85 (41%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G+ E+A   Y +AI+  P+ A+ ++  G  +    +    I     A+ ++P+   AY  
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN 208

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            G   +    ++ A      A  + 
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLS 233

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.0 bits (188), Expect = 2e-16
 Identities = 20/85 (23%), Positives = 35/85 (41%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
             F+ AV AY  A+ L+P+ A+++      Y +    +  I     A+++ P    AY  
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
              A +  G   EA      A ++ 
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLC 301

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 76.0 bits (188), Expect = 2e-16
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 123 AYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
            Y + G  + A++ Y  AI+L P     Y     +  +           + AL++ P  A
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305

Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
            +        R  G  EEA    R A ++ 
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKALEVF 335

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 75.7 bits (187), Expect = 3e-16
 Identities = 16/88 (18%), Positives = 34/88 (38%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
              G+   A++ + +A+ L+P+    Y   G    +    +  +     AL ++P+ A  
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
           +      Y   G  + A    R A ++ 
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ 267

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 75.3 bits (186), Expect = 4e-16
 Identities = 20/85 (23%), Positives = 37/85 (43%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G   +A + Y+ A++L P+ A           +       +R    AL++ P+ AAA+  
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
                +  GK +EA +  + A +I 
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRIS 369

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 74.9 bits (185), Expect = 6e-16
 Identities = 20/88 (22%), Positives = 32/88 (36%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
              G  E AV AY  A++ NP    + +  G     L +          A++  P+ A A
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
           +   G  +   G+   A      A  +D
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLD 199

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 74.5 bits (184), Expect = 7e-16
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
            ++ S      + ++      AY++        G+ ++A+  Y  A++L P     Y   
Sbjct: 48  RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
             + +        ++    AL+ NPD        G   + LG+ EEA      A +  
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 17/72 (23%), Positives = 30/72 (41%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
              G  E+AV  Y +A+++ P  A  ++       Q  K    +     A++I+P  A A
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375

Query: 184 YKFRGRAYRLLG 195
           Y   G   + + 
Sbjct: 376 YSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 9/62 (14%), Positives = 17/62 (27%)

Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
             +      Q     A  R C    +  PD+          +    + + +A     A K
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 210 ID 211
            +
Sbjct: 62  QN 63

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 81.3 bits (201), Expect = 5e-18
 Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC 170
             +   K +    + + K++DA+  Y+ A++L     + Y+     Y+ +      +   
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMS 62

Query: 171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC-KIDFDEQADEWLKEVTPNKLN 229
           + AL++ PD +     R  A   LGK+ +A  DL       DF++ + E + E   NK  
Sbjct: 63  TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122

Query: 230 LK 231
           + 
Sbjct: 123 MS 124

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 8/118 (6%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
           D        DK+ +        Y            ++ A   + +A +L+P +   Y + 
Sbjct: 285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
                + +K + C    S A +  P++     F          +++A      A +++
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 73.6 bits (181), Expect = 2e-15
 Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
           D   + EDI K+ E      ++Y              +  N + +A+KL+ +++ +Y  R
Sbjct: 252 DPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           GQ    L   +   +D   A +++P++   Y           K+++       A +  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.5 bits (178), Expect = 5e-15
 Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 17/131 (12%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
             +  E    ++  K  EA    N           F+ A+  Y  AI+L      +Y   
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412

Query: 154 GQSYLQ---------LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDL 204
                +         +            A K++P S  A     +        +EA    
Sbjct: 413 APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472

Query: 205 RNACKIDFDEQ 215
             +  +    +
Sbjct: 473 EESADLARTME 483

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 67.1 bits (164), Expect = 3e-13
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 17/127 (13%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
           + + + +D DK+ E   E I  Y           KF+D    +SEA +  P +  +    
Sbjct: 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF 378

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR---------LLGKWEEAAVDL 204
            +     +  +  ++   +A+++       Y                  +  + EA   L
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438

Query: 205 RNACKID 211
             A K+D
Sbjct: 439 EKASKLD 445

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 3/123 (2%)

Query: 91  DEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYND--GKFEDAVNAYSEAIKLNPSSAL 148
           + +E        +        +S E   +A  ++      FE+ ++  +E  KL    A+
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238

Query: 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208
                G      + P     D   A+++ P    +Y +            E       A 
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKAL 297

Query: 209 KID 211
           K+D
Sbjct: 298 KLD 300

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.5 bits (147), Expect = 6e-11
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 2/86 (2%)

Query: 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
           K            F +A N   +A KL+P S        Q  LQ    +  I     +  
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477

Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAA 201
           +        +     +    K ++  
Sbjct: 478 LARTMEEKLQ--AITFAEAAKVQQRI 501

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 2/97 (2%)

Query: 116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ-LSKPNACIRDCSVAL 174
           K       Y++   E      +    L   S   Y K  +S+ +        +   +   
Sbjct: 172 KPELTFANYDE-SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230

Query: 175 KINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           K+    A + +  G    L      A  D++ A ++ 
Sbjct: 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 143 NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAV 202
               AL    +G  + +  K +  I+  + AL++  D    Y      Y  +G  ++   
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVE 60

Query: 203 DLRNACKID 211
               A ++ 
Sbjct: 61  MSTKALELK 69

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 76.3 bits (188), Expect = 6e-18
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 3/120 (2%)

Query: 103 IEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162
             +SE+ +++         + Y  GK++DA   +     L+   A  +   G     L  
Sbjct: 11  RGLSEDTLEQLYAL---GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67

Query: 163 PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKE 222
               ++  S    ++ +           +  LG  + A     +A  +   + A E L  
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 54.7 bits (132), Expect = 8e-10
 Identities = 13/68 (19%), Positives = 24/68 (35%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G +E A+ +YS    ++ +         + +LQL   +        A  +     A    
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125

Query: 187 RGRAYRLL 194
             RA  +L
Sbjct: 126 AARAGAML 133

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 11/77 (14%), Positives = 24/77 (31%)

Query: 135 AYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194
             +    L+  +       G +  Q  K +   +       ++   A  +   G   + L
Sbjct: 6   TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65

Query: 195 GKWEEAAVDLRNACKID 211
           G +E+A         +D
Sbjct: 66  GLYEQALQSYSYGALMD 82

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 74.0 bits (182), Expect = 7e-17
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 18/124 (14%)

Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAI------------------KLNPSSA 147
            ++ +      +++    +    +++A++AY +A+                  +L+  + 
Sbjct: 4   EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNI 63

Query: 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
            LYA   Q YL +   +      S  LK    +  A   R +A     K +EA  DL+  
Sbjct: 64  PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123

Query: 208 CKID 211
            +  
Sbjct: 124 LRNH 127

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 11/59 (18%), Positives = 25/59 (42%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK 185
           G   +A    SE +K   ++     +R ++ +   K +    D  + L+ +P +A+   
Sbjct: 77  GDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA 135

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 74.5 bits (184), Expect = 2e-16
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 106 SEEDIDKSNEKKREAIHAYND------------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
           S      S+       H  +             G +E A  A+++AI+ N   A+ Y   
Sbjct: 4   SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
                 +++    +     AL+++  +A AY   G  Y +   ++EA      A +  
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 14/90 (15%), Positives = 34/90 (37%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
                +++A + + +A++    +  L+   G   ++L +P   +     A+++N +   A
Sbjct: 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
               G      G  +EA        + D  
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPG 191

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 71.0 bits (175), Expect = 4e-15
 Identities = 15/85 (17%), Positives = 29/85 (34%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
            + + A+     A++LN +      + G         +  +   +   + +P  A A+  
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            G  Y      E+A   L  A  I 
Sbjct: 199 AGVTYAYKENREKALEMLDKAIDIQ 223

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 70.2 bits (173), Expect = 7e-15
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
           D E + E   K+ E+ +E    Y +         + E A+  Y +A++L+ S+A  Y   
Sbjct: 38  DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           G  Y+              AL+   ++   +   G     L + + A   L+ A +++
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 12/73 (16%), Positives = 26/73 (35%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
            N+G  ++A++ ++   + +P  A  +   G +Y         +     A+ I PD   A
Sbjct: 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229

Query: 184 YKFRGRAYRLLGK 196
              +         
Sbjct: 230 LHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.1 bits (144), Expect = 7e-11
 Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 130 EDAVNAYSEAIKLNPSSALLYAKRGQSYL----QLSKPNACIRDCSVALKINPDSAAAYK 185
             + + +  +  L P  + + +  G   +    +           + A++ N + A  Y 
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 186 FRGRAYRLLGKWEEAAVDLRNACKID 211
                   + + E A      A ++D
Sbjct: 62  NFANLLSSVNELERALAFYDKALELD 87

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 72.1 bits (177), Expect = 3e-16
 Identities = 14/103 (13%), Positives = 28/103 (27%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           A   YN G+ E+A   +      +  +          Y    +        +VA  +  +
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKE 222
                   G+    L    +A        +   DE+     + 
Sbjct: 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 9/103 (8%), Positives = 25/103 (24%), Gaps = 6/103 (5%)

Query: 109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIR 168
           +I ++       I A N G          +   +              +    +      
Sbjct: 4   NITENESISTAVIDAINSGA------TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEV 57

Query: 169 DCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
                   +  +          Y++  ++++AA     A  + 
Sbjct: 58  FFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 70.9 bits (175), Expect = 3e-16
 Identities = 14/90 (15%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS--A 181
           Y+ G + ++++ + +AI+L+P  +  +  +G++   L +    +   +  + +  D    
Sbjct: 17  YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76

Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
             +  +  A R +   E  A       K++
Sbjct: 77  DVWAAKADALRYIEGKEVEAEIAEARAKLE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201
           +   +   Y   G            I     A++++P+ +  +  +G+A   L ++EEA 
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 202 VDLRNACKIDFD-EQADEW 219
                   +  D    D W
Sbjct: 61  DCYNYVINVIEDEYNKDVW 79

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 127 GKFEDAVNAYSEAIKLNP--SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
            ++E+AV+ Y+  I +     +  ++A +  +   +              K+   
Sbjct: 54  ERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 73.8 bits (182), Expect = 5e-16
 Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV---ALKI 176
           A   + +  + +A+  +++      +S  +Y +R   Y +L+K +   +D       +  
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69

Query: 177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
               +A +++ G+     G+   A    + A   D
Sbjct: 70  TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD 104

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 11/88 (12%), Positives = 29/88 (32%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
              G+   A+  Y  A+  + +   +Y + G  +         I+     ++        
Sbjct: 85  MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
           +   G+AY    ++ +A        ++ 
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELK 172

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 11/121 (9%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAV---NAYSEAIKLNPSSALLY 150
           +   + E  +K   KK  + + YN          K++ A      Y   +    + +  +
Sbjct: 18  NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF 77

Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
              G+  ++  + +  I+    A+  +      Y   G  +   G +  A   +    + 
Sbjct: 78  EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137

Query: 211 D 211
            
Sbjct: 138 T 138

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 11/121 (9%)

Query: 108 EDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ 159
           +    + ++    +  Y          G F  A+    + I+   +   ++ + GQ+Y  
Sbjct: 95  QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154

Query: 160 LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG---KWEEAAVDLRNACKIDFDEQA 216
             +           L++ P+    Y +R RA        K   A        ++     A
Sbjct: 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214

Query: 217 D 217
            
Sbjct: 215 K 215

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 9/80 (11%), Positives = 15/80 (18%), Gaps = 8/80 (10%)

Query: 125 NDGKFEDAVNAYSEAIKLNPSSALL--------YAKRGQSYLQLSKPNACIRDCSVALKI 176
            D K   A   Y + I++                      Y                L +
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 177 NPDSAAAYKFRGRAYRLLGK 196
           +P +  A             
Sbjct: 251 DPTNKKAIDGLKMKLEHHHH 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 9/55 (16%), Positives = 17/55 (30%)

Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDL 204
             +      + +     I   +       +S   Y  R   Y  L K++ A  D+
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 1/97 (1%)

Query: 122 HAYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
           H++   G+ + A++AY+ A +L   + L Y   G  ++QL            +  +    
Sbjct: 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQAD 217
                  G         + A    +NA  +    Q++
Sbjct: 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 88  SEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA 147
           S  DE     D  + I   E+  D    K   A   +   +F D +   ++ ++++P + 
Sbjct: 283 SHEDELRRAEDYLSSINGLEKSSDLLLCK---ADTLFVRSRFIDVLAITTKILEIDPYNL 339

Query: 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
            +Y     S  +  + N      +  +  +P+ A  +   G  Y  + K  EA      +
Sbjct: 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399

Query: 208 CKID 211
             +D
Sbjct: 400 STMD 403

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.3 bits (172), Expect = 3e-14
 Identities = 14/88 (15%), Positives = 33/88 (37%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
               K  +A   +S++  ++P     +     S+    + +  I   + A ++   +   
Sbjct: 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
           Y F G  +  LG    A   L+++  + 
Sbjct: 444 YLFLGMQHMQLGNILLANEYLQSSYALF 471

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 69.1 bits (169), Expect = 8e-14
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 123 AYNDGKFEDAVNAYSEAIKL-------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
           A+N    + A+N +  A+ L           A  +A  G +Y +L   +A I   +  L 
Sbjct: 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544

Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           ++ + A  +      Y        A   L  +  I 
Sbjct: 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 14/88 (15%), Positives = 37/88 (42%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
           +  G+        ++ +  +P  A+ +   G  YL ++K +   R  S +  ++P    A
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
           +     ++ + G+ ++A      A ++ 
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLF 437

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 9e-12
 Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 7/95 (7%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI-------NPD 179
           G    A      +  L     LL  + G      S     I     AL +          
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214
            AA +   G AYR L  ++ A   L     +  ++
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.5 bits (152), Expect = 1e-11
 Identities = 16/122 (13%), Positives = 36/122 (29%)

Query: 90  PDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALL 149
            DEE  +         S+ED           ++  +          Y  +I     S+ L
Sbjct: 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDL 307

Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
              +  +    S+    +   +  L+I+P +   Y     +    G+  +  +   +   
Sbjct: 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

Query: 210 ID 211
             
Sbjct: 368 RH 369

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.2 bits (146), Expect = 7e-11
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 122 HAYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
           HAY     ++ A++A ++ + L+ + A ++      YL    P   I     +L I+P+ 
Sbjct: 524 HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583

Query: 181 AAAYKFRGRAYR 192
             A     RA  
Sbjct: 584 IMASDLLKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 22/156 (14%), Positives = 38/156 (24%), Gaps = 4/156 (2%)

Query: 47  PPSKAQSDAPKPEKPFTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVS 106
           P +    DA       T P   A    +  S         ++                 +
Sbjct: 16  PGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNA 75

Query: 107 EEDIDKSNEKK-REAIH-AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPN 164
           +     S E   R   H A    +++ A     + + +  +    +    Q Y       
Sbjct: 76  QNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFW-LAQVYCCTGDYA 134

Query: 165 ACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA 200
                 +     N  SA  Y         L  W+ A
Sbjct: 135 RAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGA 169

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 8/121 (6%)

Query: 115 EKKREAIHAYND-----GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD 169
              + A++   +        ++A     +   +   +++ Y  RGQ Y  LS  +     
Sbjct: 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYL-RGQVYTNLSNFDRAKEC 222

Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN 229
              AL ++     A+      + L    E   V   N       ++   +L+ +   KLN
Sbjct: 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY--SKEDAAFLRSLYMLKLN 280

Query: 230 L 230
            
Sbjct: 281 K 281

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 20/85 (23%), Positives = 34/85 (40%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G    A N +S+A+ + P    ++   G    Q    +A        L+++P    A+  
Sbjct: 57  GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 116

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
           RG A    G+ + A  DL    + D
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDD 141

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 69.6 bits (171), Expect = 2e-14
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIK----LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
           A+      + E  +    + +      +   A L  +RG  Y  L        D S AL 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           I PD    + + G      G ++ A     +  ++D
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 67.7 bits (166), Expect = 8e-14
 Identities = 11/77 (14%), Positives = 26/77 (33%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
                 E      ++   L    +      G+ YL L   ++      +A+  N  +   
Sbjct: 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251

Query: 184 YKFRGRAYRLLGKWEEA 200
           +++      LLG+ ++ 
Sbjct: 252 HRYALLELSLLGQDQDD 268

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
              G F+ A  A+   ++L+P+    +  RG +     +      D     + +P+    
Sbjct: 88  TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR 147

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQAD 217
             +   A + L + ++A   L+   +    EQ  
Sbjct: 148 SLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWG 180

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 4/100 (4%)

Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRG---QSYLQLSKPNACIRDCSVALKINPD 179
           A      + A     +  + +      +        +  + +       D +    +   
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
            +    + G+ Y  LG  + A    + A   +      E 
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-FVEH 252

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 15/85 (17%), Positives = 25/85 (29%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G       A    + L+P      A+ G+      +          A    P+      +
Sbjct: 37  GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW 96

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            G A    G+ E AA     A ++ 
Sbjct: 97  LGHALEDAGQAEAAAAAYTRAHQLL 121

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 15/85 (17%), Positives = 26/85 (30%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
                 +     A++  P   + +     + L +    A        L ++P    A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            GR      +  EAAV L+ A    
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAA 87

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 10/82 (12%), Positives = 21/82 (25%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
               +   +  +A     +A    P    +    G +     +  A     + A ++ P+
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 180 SAAAYKFRGRAYRLLGKWEEAA 201
                       R L  W    
Sbjct: 124 EPYITAQLLNWRRRLCDWRALD 145

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 5/47 (10%), Positives = 14/47 (29%)

Query: 167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
           +     A++  P    A+     A   +G      + ++    +   
Sbjct: 9   LLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG 55

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 71.0 bits (174), Expect = 2e-15
 Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 16/122 (13%)

Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAI----------------KLNPSSALL 149
            EE +  + + K E    +   +  +A+  Y EA+                K        
Sbjct: 31  DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90

Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
                  Y +       I   S  LKI+ ++  A    G A    G  EEA  +L  A  
Sbjct: 91  NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150

Query: 210 ID 211
           ++
Sbjct: 151 LN 152

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 1/110 (0%)

Query: 122 HAYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
           H++    + + A+ AY  A +L     L     G  Y   +      R  S AL I P+ 
Sbjct: 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192

Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNL 230
                  G      G+W+ A     +A +       +  + +  P   NL
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 71.6 bits (176), Expect = 5e-15
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 122 HAYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
           H      K+ +A++ + +A+ L P +A  Y+  G  +  +      +     AL +  D 
Sbjct: 244 HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303

Query: 181 AAAYKFRGRAYRLLGKWEEAAV 202
             +    G    +     EA +
Sbjct: 304 TFSVTMLGHCIEMYIGDSEAYI 325

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 9/97 (9%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSS---------ALLYAKRGQSYLQLSKPNACIRDCSVAL 174
           + +G+++ A   + +A++   +            L    G    +L K    +     AL
Sbjct: 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263

Query: 175 KINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
            + P +A+ Y   G  + L+G +E A      A  + 
Sbjct: 264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           A   Y +  F+      S  ++ +P  A        + ++L+K N         + + P 
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVD-LRNACKID 211
           +  ++   G  Y ++G   E A   L  A  ++
Sbjct: 89  NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE 121

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 16/84 (19%), Positives = 27/84 (32%)

Query: 128 KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR 187
           K E A    S+A  L  +    +   G S+   S+ +  +     A ++         + 
Sbjct: 106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165

Query: 188 GRAYRLLGKWEEAAVDLRNACKID 211
           G  Y L    + A      A  I 
Sbjct: 166 GLEYGLTNNSKLAERFFSQALSIA 189

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 9/97 (9%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN--------- 177
              + A   +S+A+ + P    +  + G    Q  +     +    AL+           
Sbjct: 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232

Query: 178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214
                     G   R L K+ EA    R A  +    
Sbjct: 233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 9/82 (10%), Positives = 23/82 (28%)

Query: 130 EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189
           + +     E++     +  +     + +        C +  SV ++ +P  A+       
Sbjct: 5   KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64

Query: 190 AYRLLGKWEEAAVDLRNACKID 211
               L K  E          + 
Sbjct: 65  TLVELNKANELFYLSHKLVDLY 86

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 73.2 bits (180), Expect = 3e-15
 Identities = 13/123 (10%), Positives = 28/123 (22%), Gaps = 8/123 (6%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
            ++     + +++    E + A              +  +    +A  L P   +  A  
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
                 L      +     A  + P    A    G     L            A     +
Sbjct: 419 DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTN 478

Query: 214 EQA 216
           +  
Sbjct: 479 DHL 481

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 73.2 bits (180), Expect = 3e-15
 Identities = 12/87 (13%), Positives = 22/87 (25%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L P   +  A  G     L      +     A  + P    A   
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 349

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFD 213
                + L   +     L  A  +  +
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPE 376

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.1 bits (177), Expect = 6e-15
 Identities = 12/85 (14%), Positives = 22/85 (25%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L P   +  A  G     L      +     A  + P+   A   
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 417

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
                + L   +     L  A  + 
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLT 442

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.1 bits (177), Expect = 7e-15
 Identities = 13/118 (11%), Positives = 31/118 (26%), Gaps = 8/118 (6%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
            ++     + +++    + + A              +  +    +A  L P   +  A  
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
                 L      +     A  + P+   A    G   + L   +     L  A  + 
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 408

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 71.7 bits (176), Expect = 9e-15
 Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 8/118 (6%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
            ++     + +++    E + A              +  +    +A  L P   +  A  
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASN 180

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           G     L      +     A  + P    A    G   + L   +     L  A  + 
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 12/85 (14%), Positives = 21/85 (24%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L P   +  A        L      +     A  + P    A   
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 315

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            G   + L   +     L  A  + 
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLT 340

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 1/93 (1%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L P   +  A  G     L      +     A  + P    A   
Sbjct: 222 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 281

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
                + L   +     L  A  +    Q    
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQ-QVVAI 313

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 9/126 (7%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
            ++     + +++    + + A              +  +    +A  L P   +  A  
Sbjct: 87  TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 146

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
                 L    A +     A  + P+   A    G   + L   +     L  A  +   
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206

Query: 214 EQADEW 219
            Q    
Sbjct: 207 -QVVAI 211

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 67.5 bits (165), Expect = 3e-13
 Identities = 11/85 (12%), Positives = 21/85 (24%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L P   +  A        L      +     A  + P+   A   
Sbjct: 86  ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
                + L   +     L  A  + 
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLT 170

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 66.7 bits (163), Expect = 4e-13
 Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 8/118 (6%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
            ++     + +++    E + A              +  +    +A  L P   +  A  
Sbjct: 155 TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 214

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           G     L      +     A  + P    A    G   + L   +     L  A  + 
Sbjct: 215 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 9e-12
 Identities = 16/106 (15%), Positives = 27/106 (25%), Gaps = 6/106 (5%)

Query: 119 EAIHAYNDGKFEDAVNAYSEA-----IKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
             I         +AV+A+  A     + L P   +  A        L      +     A
Sbjct: 39  LKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQA 98

Query: 174 LKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
             + P    A        + L   +     L  A  +  + Q    
Sbjct: 99  HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE-QVVAI 143

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.3 bits (123), Expect = 8e-08
 Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 1/93 (1%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
                A       ++L+    L  AKRG      +            L + P+   A   
Sbjct: 18  ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIAS 77

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
                + L   +     L  A  +    Q    
Sbjct: 78  HDGGKQALETVQRLLPVLCQAHGLTPQ-QVVAI 109

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 14/102 (13%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
            ++     + +++    E + A              +  +    +A  L P   +  A  
Sbjct: 393 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 452

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG 195
           G     L    A +     AL    +          A   LG
Sbjct: 453 GGGRPALESIVAQLSRPDPALAALTND------HLVALACLG 488

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 73.3 bits (179), Expect = 3e-15
 Identities = 24/87 (27%), Positives = 44/87 (50%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           GK ++A+  Y EAI+++P+ A  Y+  G +  ++      ++  + A++INP  A A+  
Sbjct: 57  GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFD 213
               ++  G   EA    R A K+  D
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPD 143

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 63.3 bits (153), Expect = 9e-12
 Identities = 21/92 (22%), Positives = 37/92 (40%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           A      G  E+AV  Y +A+++ P  A  ++       Q  K    +     A++I+P 
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
            A AY   G   + +   + A      A +I+
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 62.5 bits (151), Expect = 1e-11
 Identities = 22/104 (21%), Positives = 40/104 (38%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              + A+  Y+ AI++NP+ A  ++     +         I     ALK+ PD   AY  
Sbjct: 91  QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNL 230
                +++  W +    ++    I  D+     L  V P+   L
Sbjct: 151 LAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSML 194

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 15/72 (20%), Positives = 27/72 (37%)

Query: 142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201
             P+ A           +       +R    AL++ P+ AAA+       +  GK +EA 
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 202 VDLRNACKIDFD 213
           +  + A +I   
Sbjct: 64  MHYKEAIRISPT 75

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 72.2 bits (177), Expect = 3e-15
 Identities = 27/165 (16%), Positives = 57/165 (34%), Gaps = 15/165 (9%)

Query: 62  FTTPEPSAPEEESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAI 121
                  A     +E      N  +  E   +       +    SEE +++S   K    
Sbjct: 96  VYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT 155

Query: 122 HAYNDGKFEDAVNAYSEAI---------------KLNPSSALLYAKRGQSYLQLSKPNAC 166
             + +GK++ A+  Y + +               K        +      +L+L   +A 
Sbjct: 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA 215

Query: 167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           I  C+ AL+++ ++      RG A+  +  +E A  D +   ++ 
Sbjct: 216 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 71.6 bits (176), Expect = 6e-15
 Identities = 19/88 (21%), Positives = 35/88 (39%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
                ++ A      A++L P  A L+ K G +    ++P   +   + AL INP     
Sbjct: 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
                 +Y  + +++ AA  L  A  + 
Sbjct: 243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 13/93 (13%), Positives = 26/93 (27%)

Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
           E +         +A  A+    +  P     +   G +  +  K    I   + A  ++P
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86

Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
              A +     ++        A   LR      
Sbjct: 87  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 119

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 17/85 (20%), Positives = 36/85 (42%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
            ++ +       A+++NP+ A L+A  G  Y   +  ++   +   A+++ PD A  +  
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            G       + +EA      A  I+
Sbjct: 212 LGATLANGNRPQEALDAYNRALDIN 236

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 37/137 (27%)

Query: 112 KSNEKKREAIHAY----------------------NDGKFEDAVNAYSEAIKLNPSSALL 149
             NEK   AI A                       N+     A+ +    +   P    L
Sbjct: 66  AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125

Query: 150 Y---------------AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL 194
                                 +   ++   C      AL++NP+ A  +   G  Y L 
Sbjct: 126 GSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185

Query: 195 GKWEEAAVDLRNACKID 211
             ++ AA +LR A ++ 
Sbjct: 186 NNYDSAAANLRRAVELR 202

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 56.9 bits (138), Expect = 7e-10
 Identities = 14/85 (16%), Positives = 24/85 (28%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G        Y               + G S L+L+             +  P+   A++ 
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            G       K   A + L +A  +D
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLD 85

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
            N  + ++A++AY+ A+ +NP    +      SY  +S+ +   +    A+ +       
Sbjct: 217 ANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276

Query: 184 YKFR------------GRAYRLLGKWEEA 200
                                ++ + +  
Sbjct: 277 TGEASREATRSMWDFFRMLLNVMNRPDLV 305

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 69.4 bits (171), Expect = 7e-15
 Identities = 13/88 (14%), Positives = 29/88 (32%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
              G++  AV    +    +     +    G +Y++    +        +L   PD+   
Sbjct: 19  AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV 78

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
               G  Y  + K++ A   L    + +
Sbjct: 79  ATVLGLTYVQVQKYDLAVPLLIKVAEAN 106

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 67.1 bits (165), Expect = 4e-14
 Identities = 18/85 (21%), Positives = 39/85 (45%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
            K++ AV    +  + NP +  +  + G +   L + +  I    +AL + P+    ++ 
Sbjct: 90  QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
              +Y  +G+ EEA    + A ++D
Sbjct: 150 IAFSYEQMGRHEEALPHFKKANELD 174

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 66.3 bits (163), Expect = 9e-14
 Identities = 15/85 (17%), Positives = 32/85 (37%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G  +        ++   P +  +    G +Y+Q+ K +  +       + NP +      
Sbjct: 56  GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR 115

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            G A   LG+++EA    + A  + 
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLR 140

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 50.9 bits (123), Expect = 3e-08
 Identities = 9/74 (12%), Positives = 21/74 (28%)

Query: 140 IKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEE 199
           +  +    + Y  +G S+ +  + +  +         +          G AY   G  + 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 200 AAVDLRNACKIDFD 213
               L  +     D
Sbjct: 61  GTELLERSLADAPD 74

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 50.1 bits (121), Expect = 5e-08
 Identities = 10/58 (17%), Positives = 29/58 (50%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184
           G+F++A++++  A+ L P+   ++     SY Q+ +    +     A +++  ++   
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 67.8 bits (167), Expect = 1e-14
 Identities = 25/85 (29%), Positives = 46/85 (54%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G +++A+  Y +A++L+P SA  +   G +Y +    +  I     AL+++P SA A+  
Sbjct: 15  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            G AY   G ++EA    + A ++D
Sbjct: 75  LGNAYYKQGDYDEAIEYYQKALELD 99

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 66.6 bits (164), Expect = 2e-14
 Identities = 25/85 (29%), Positives = 46/85 (54%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G +++A+  Y +A++L+P SA  +   G +Y +    +  I     AL+++P SA A+  
Sbjct: 49  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            G AY   G ++EA    + A ++D
Sbjct: 109 LGNAYYKQGDYDEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 47.0 bits (113), Expect = 4e-07
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 123 AYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
           AY   G +++A+  Y +A++L+P SA  +   G +Y +    +  I     AL+++P S
Sbjct: 78  AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 30/62 (48%)

Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
           +   G +Y +    +  I     AL+++P SA A+   G AY   G ++EA    + A +
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63

Query: 210 ID 211
           +D
Sbjct: 64  LD 65

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 68.0 bits (166), Expect = 1e-14
 Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 3/120 (2%)

Query: 103 IEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK 162
            E+S + +++       A + Y  G +EDA   +     L+   +  +   G     + +
Sbjct: 14  NEISSDTLEQLYSL---AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ 70

Query: 163 PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKE 222
            +  I   S    ++                 G+  EA   L  A ++  +      L  
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 6/85 (7%), Positives = 22/85 (25%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G         +   +++  +         +  Q                ++   +  +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            G   + +G+++ A         +D
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMD 85

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 52.6 bits (126), Expect = 5e-09
 Identities = 9/74 (12%), Positives = 26/74 (35%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G+++ A+++YS    ++           +  LQ  +         +A ++  +     + 
Sbjct: 69  GQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128

Query: 187 RGRAYRLLGKWEEA 200
             R   +L   +  
Sbjct: 129 STRVSSMLEAIKLK 142

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 15/93 (16%), Positives = 34/93 (36%)

Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
           E +    +G   +AV  +  A++ +P     +   G +  +  +    I      L++ P
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 129

Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           D+  A      ++       +A   LR+  +  
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYT 162

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 18/88 (20%), Positives = 37/88 (42%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
              G+++ AV+ ++ A+ + P+  LL+ K G +    ++    +     AL++ P    +
Sbjct: 228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 287

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
               G +   LG   EA      A  + 
Sbjct: 288 RYNLGISCINLGAHREAVEHFLEALNMQ 315

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 2/96 (2%)

Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRDCSVALK 175
           R      +D  F +    +  A++L+P+S    +    G  +    + +  +   + AL 
Sbjct: 186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245

Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           + P+    +   G       + EEA    R A ++ 
Sbjct: 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 4/101 (3%)

Query: 115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAK----RGQSYLQLSKPNACIRDC 170
            K+    H +     +     Y +  +    + L         G   LQ       +   
Sbjct: 28  AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87

Query: 171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
             A++ +P    A+++ G       +   A   LR   ++ 
Sbjct: 88  EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 11/88 (12%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
            N  + E+AV AY  A++L P         G S + L      +     AL +   S   
Sbjct: 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321

Query: 184 YKFR-----------GRAYRLLGKWEEA 200
                            A  +LG+ +  
Sbjct: 322 RGEGGAMSENIWSTLRLALSMLGQSDAY 349

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 15/103 (14%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
             + +   A++A    ++L P +         S+   S            L+  P  A  
Sbjct: 109 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 168

Query: 184 YKFR---------GRAYRLLG------KWEEAAVDLRNACKID 211
                        G + R+LG       + E       A ++D
Sbjct: 169 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 211

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 18/88 (20%), Positives = 38/88 (43%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
           +  G+F  A++A++ A+ + P    L+ + G +     +    +   + AL+I P    +
Sbjct: 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
               G +   LG + EA  +   A  + 
Sbjct: 284 RYNLGISCINLGAYREAVSNFLTALSLQ 311

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 17/93 (18%), Positives = 33/93 (35%)

Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
           E +    +G     +     AI  +P  A  +   G +  +     A I      L++ P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           ++  A      +Y      ++A   L+N  K +
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQN 163

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 5/124 (4%)

Query: 93  EEPIPDVATDIEVSEEDIDKSNEKKR-----EAIHAYNDGKFEDAVNAYSEAIKLNPSSA 147
           E     V +D E  ++   +  E  R     E   A N      +   Y    +      
Sbjct: 6   ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65

Query: 148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
               + G   L+       I     A+  +P  A A++F G         + A V L+  
Sbjct: 66  PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125

Query: 208 CKID 211
            ++ 
Sbjct: 126 LELQ 129

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 14/84 (16%), Positives = 27/84 (32%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
             +   + A+ A    ++L P++         SY   S            +K NP     
Sbjct: 110 AENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNA 207
            K +  +  L  +  ++ VD    
Sbjct: 170 VKNKKGSPGLTRRMSKSPVDSSVL 193

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 4/102 (3%)

Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRD 169
               +  ++         E     Y EA   N       L    G  +    + N  I  
Sbjct: 178 GLTRRMSKSPVDS--SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235

Query: 170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
            + AL + P+  + +   G       + EEA      A +I 
Sbjct: 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.7 bits (132), Expect = 4e-09
 Identities = 26/134 (19%), Positives = 36/134 (26%), Gaps = 34/134 (25%)

Query: 112 KSNEKKREAIHAY----------------------NDGKFEDAVNAYSEAIKLNPSSALL 149
             NE ++ AI A                       N    +DA  A    IK NP    L
Sbjct: 110 AENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169

Query: 150 YAKRGQSYLQLSKPNACIRDCSV----------ALKINPDS--AAAYKFRGRAYRLLGKW 197
              +  S     + +    D SV          A   N D          G  + L G++
Sbjct: 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF 229

Query: 198 EEAAVDLRNACKID 211
             A      A  + 
Sbjct: 230 NRAIDAFNAALTVR 243

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 15/68 (22%), Positives = 26/68 (38%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
            N  + E+AV AY+ A+++ P         G S + L      + +   AL +   S   
Sbjct: 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317

Query: 184 YKFRGRAY 191
            +    A 
Sbjct: 318 QQVPHPAI 325

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 10/93 (10%), Positives = 19/93 (20%), Gaps = 8/93 (8%)

Query: 127 GKFEDAVNAYSEAIKLNPS--------SALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
            +FE A  A     +            +   +    Q        +A  +      +   
Sbjct: 3   MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62

Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
                    G      G      + +  A   D
Sbjct: 63  KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 66.3 bits (163), Expect = 3e-14
 Identities = 23/85 (27%), Positives = 48/85 (56%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G +++A+  Y +A++L+P++A  +   G +Y +    +  I     AL+++P++A A+  
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            G AY   G ++EA    + A ++D
Sbjct: 83  LGNAYYKQGDYDEAIEYYQKALELD 107

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 56.6 bits (138), Expect = 9e-11
 Identities = 18/69 (26%), Positives = 39/69 (56%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G +++A+  Y +A++L+P++A  +   G +Y +    +  I     AL+++P++A A + 
Sbjct: 57  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116

Query: 187 RGRAYRLLG 195
            G A +  G
Sbjct: 117 LGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 142 LNPS-SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA 200
           ++P  SA  +   G +Y +    +  I     AL+++P++A A+   G AY   G ++EA
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 201 AVDLRNACKIDFD 213
               + A ++D +
Sbjct: 63  IEYYQKALELDPN 75

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 65.4 bits (160), Expect = 4e-14
 Identities = 13/82 (15%), Positives = 29/82 (35%)

Query: 130 EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR 189
           +         +     + LL    G++Y +  + +A +     AL  +P  + A+K+ G+
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 190 AYRLLGKWEEAAVDLRNACKID 211
             +  G    A     +     
Sbjct: 62  TLQGQGDRAGARQAWESGLAAA 83

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 2/79 (2%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SA 181
               +F+ A+     A+  +P+ ++ +   G++           +     L         
Sbjct: 30  AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89

Query: 182 AAYKFRGRAYRLLGKWEEA 200
              K      R L + +  
Sbjct: 90  QVVKELQVFLRRLAREDAL 108

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 9/131 (6%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
           + + +     +  +K    +             G+ +DA+  Y + ++L   +       
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 154 GQSY-LQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212
           G  Y L   +    +      L        A    G +     ++E+A   L+       
Sbjct: 129 GNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188

Query: 213 DEQADEWLKEV 223
             +A + L ++
Sbjct: 189 STEAQKTLDKI 199

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
             +  ++ A   Y E ++  P++        +  +   +    +R     L++  D+ AA
Sbjct: 65  KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124

Query: 184 YKFRGRAYRLLGKWEEAAV-DLRNACKID 211
             F G  Y L  + E+  +          
Sbjct: 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSP 153

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 59.4 bits (144), Expect = 4e-11
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 16/109 (14%)

Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKR----------------GQSYLQLSK 162
           +   A   G+   AV+ + + I LN     +Y                     +Y +   
Sbjct: 10  KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69

Query: 163 PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
            +         L+  P++    +         G+ ++A        +++
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 8/77 (10%), Positives = 20/77 (25%), Gaps = 2/77 (2%)

Query: 124 YNDGKFED-AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
           Y   + E   +    + +           + G S L  ++           +   P + A
Sbjct: 133 YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192

Query: 183 AYKFRGRAYRLLGKWEE 199
                 +  R+  +   
Sbjct: 193 QKTL-DKILRIEKEVNR 208

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 62.5 bits (152), Expect = 6e-13
 Identities = 13/93 (13%), Positives = 26/93 (27%)

Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
           E +         +A  A+    +  P     +   G +  +  K    I   + A  ++P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
              A +     ++        A   LR      
Sbjct: 83  KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 12/60 (20%), Positives = 22/60 (36%)

Query: 152 KRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           + G S L+L+             +  P+   A++  G       K   A + L +A  +D
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 12/54 (22%), Positives = 20/54 (37%)

Query: 126 DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           + K   A+ A + A  L+P    ++A    S+      NA +      L   P 
Sbjct: 64  NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 64.1 bits (157), Expect = 8e-13
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
           Y  G+++ A+  +  A+K NP          ++ L+L   N  + +    +   P     
Sbjct: 16  YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75

Query: 184 YKFRGRAYRLL-----------GKWEEAAVDLRNACKID 211
           Y     AY  L           G  E+A   L++A +++
Sbjct: 76  YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 64.1 bits (157), Expect = 1e-12
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNAC-----------IRDCSVALK 175
           G    A+      +   P     Y    ++Y+ L +               +     A +
Sbjct: 53  GLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112

Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           +NP  A  +  RG  Y LLG+ ++A   L+ A  ++
Sbjct: 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 62.2 bits (152), Expect = 5e-12
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G+ + A  +  +A+ L  +   + +   + YL + + +  +   + AL+  P        
Sbjct: 132 GERDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVR 190

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
              A  L GK EEAA          
Sbjct: 191 YASALLLKGKAEEAARAAALEHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G  E A++   +A ++NP  A L+ +RG  Y  L + +        AL +          
Sbjct: 98  GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSA 156

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
               Y  +G+ +EA      A +  
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQA 181

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.1 bits (113), Expect = 9e-07
 Identities = 13/62 (20%), Positives = 20/62 (32%)

Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
             + G     L + +A +     ALK NP    A  +  R    LG    A  + +    
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67

Query: 210 ID 211
             
Sbjct: 68  RT 69

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 9/52 (17%), Positives = 22/52 (42%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
           G+ ++A+  Y++A++  P    L  +   + L   K     R  ++    + 
Sbjct: 165 GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP 178
           E + A +   ++ A++A+S    +    + +    G  Y  L       +  + ++  + 
Sbjct: 12  EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
             A AY  RG  Y    K++ A  DL+ A
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEA 97

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 16/105 (15%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK-INPDSAAAYK 185
               +A  A++ +I  +   A+ Y +RG  Y Q  K +  I+D   AL  +  +    YK
Sbjct: 51  KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110

Query: 186 F---------------RGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
                               Y    +W++A   L  A  +  + +
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 3/70 (4%)

Query: 142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA 201
           ++   A+     G            +   S    +    +      G  Y +L    EA 
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAE 57

Query: 202 VDLRNACKID 211
                +   D
Sbjct: 58  KAFTRSINRD 67

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 65.1 bits (158), Expect = 2e-12
 Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 1/93 (1%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L P+  +  A        L      +     A  + PD   A   
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
                + L   +     L  A  +   +Q    
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLT-PDQVVAI 297

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 64.7 bits (157), Expect = 3e-12
 Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 1/93 (1%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L P   +  A  G     L      +     A  + PD   A   
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
                + L   +     L  A  +   +Q    
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLT-PDQVVAI 365

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.5 bits (154), Expect = 6e-12
 Identities = 14/90 (15%), Positives = 24/90 (26%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L P   +  A        L      +     A  + PD   A   
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQA 216
            G   + L   +     L  A  +  D+  
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVV 397

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 13/85 (15%), Positives = 22/85 (25%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L P   +  A        L      +     A  + PD   A   
Sbjct: 240 ETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 299

Query: 187 RGRAYRLLGKWEEAAVDLRNACKID 211
            G   + L   +     L  A  + 
Sbjct: 300 HGGGKQALETVQRLLPVLCQAHGLT 324

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.4 bits (151), Expect = 2e-11
 Identities = 13/121 (10%), Positives = 30/121 (24%), Gaps = 8/121 (6%)

Query: 101 TDIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAK 152
             ++     + +++      + A              +  +    +A  L P   +  A 
Sbjct: 613 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 672

Query: 153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212
            G     L      +     A  +  +   A        + L   +     L  A  +  
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732

Query: 213 D 213
           D
Sbjct: 733 D 733

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 3e-10
 Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 1/93 (1%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L P   +  A  G     L      +     A  + PD   A   
Sbjct: 511 ATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 570

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
            G   + L   +     L  A  +    Q    
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQV-QVVAI 602

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 5e-10
 Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 9/131 (6%)

Query: 94  EPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEA-----IKLNPSSAL 148
           E +   A ++      +D         I         +AV+A   A     + L P+  +
Sbjct: 137 EALLTDAGELRGPPLQLDTGQ---LVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVV 193

Query: 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208
             A        L      +     A  + P    A        + L   +     L  A 
Sbjct: 194 AIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAH 253

Query: 209 KIDFDEQADEW 219
            +   +Q    
Sbjct: 254 GLP-PDQVVAI 263

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.7 bits (139), Expect = 6e-10
 Identities = 12/93 (12%), Positives = 23/93 (24%), Gaps = 1/93 (1%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +   L P+  +  A        L      +     A  + PD   A   
Sbjct: 443 ETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIAS 502

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
                + L   +     L  A  +   +Q    
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLT-PDQVVAI 534

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 17/127 (13%), Positives = 33/127 (25%), Gaps = 5/127 (3%)

Query: 93  EEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAK 152
           +  +P +     ++ + +                   +  +    +A  L P   +  A 
Sbjct: 311 QRLLPVLCQAHGLTPDQVVAIASH---DGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367

Query: 153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212
            G     L      +     A  + PD   A    G   + L   +     L  A  +  
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG-GKQALETVQRLLPVLCQAHGLTP 426

Query: 213 DEQADEW 219
           D Q    
Sbjct: 427 D-QVVAI 432

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 3e-09
 Identities = 10/81 (12%), Positives = 18/81 (22%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L     +  A        L      +     A  + P    A   
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 638

Query: 187 RGRAYRLLGKWEEAAVDLRNA 207
                + L   +     L  A
Sbjct: 639 HDGGKQALETVQRLLPVLCQA 659

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 12/93 (12%), Positives = 21/93 (22%), Gaps = 1/93 (1%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L P   +  A  G     L      +     A  +      A   
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIAS 604

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
                + L   +     L  A  +    Q    
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPA-QVVAI 636

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 5e-09
 Identities = 11/92 (11%), Positives = 22/92 (23%)

Query: 123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
                  +  +    +A  L P   +  A        L      +        + P    
Sbjct: 405 KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV 464

Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214
           A        + L   ++    L  A  +  D+
Sbjct: 465 AIASHDGGKQALETVQQLLPVLCQAHGLTPDQ 496

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 7e-09
 Identities = 12/87 (13%), Positives = 21/87 (24%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L     +  A        L      +     A  + PD   A   
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFD 213
            G   + L   +     L  A  +   
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPA 767

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 14/87 (16%), Positives = 24/87 (27%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
              +  +    +A  L P   +  A        L+     +     A  + PD   A   
Sbjct: 477 ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIAS 536

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFD 213
            G   + L   +     L  A  +  D
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPD 563

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.5 bits (115), Expect = 8e-07
 Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 8/124 (6%)

Query: 101 TDIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAK 152
             ++     + +++   +E + A              +  +    +A  L P   +  A 
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740

Query: 153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF 212
            G     L      +     A  + P    A        + L   +     L     +  
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800

Query: 213 DEQA 216
            +  
Sbjct: 801 AQVV 804

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 7/123 (5%)

Query: 96  IPDVATDIEVSEEDID--KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKR 153
           +P +  D  ++   +    SN   ++A+        +  +    +A  L     +  A  
Sbjct: 789 LPVLCQDHGLTLAQVVAIASNIGGKQALETV-----QRLLPVLCQAHGLTQDQVVAIASN 843

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
                 L      +        + PD   A        + L   +     L     +  D
Sbjct: 844 IGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLD 903

Query: 214 EQA 216
           +  
Sbjct: 904 QVV 906

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 99  VATDIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLY 150
           V     + +++  K+++ + EA  AY          G  E A     +A++++PSSA  +
Sbjct: 15  VPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAH 74

Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
           A     +    +P     +   AL  +  +A      G       ++EEA   L  A
Sbjct: 75  AALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA 131

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 8/75 (10%), Positives = 26/75 (34%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
            K   A   + ++++LN +   +  +      +  +     +   +  +    +A +   
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLL 214

Query: 187 RGRAYRLLGKWEEAA 201
             R  ++    + AA
Sbjct: 215 GIRLAKVFEDRDTAA 229

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 2/92 (2%)

Query: 124 YNDGKFEDAVNAYSEAIK--LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
           Y   ++E+A     EA +  L P  + ++   G   LQ+ KP         +L++N +  
Sbjct: 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP 175

Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
           +             ++  A        +    
Sbjct: 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 17/81 (20%), Positives = 28/81 (34%)

Query: 131 DAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA 190
                  +  K    +   Y + G  YLQ             AL+I+P SA A+      
Sbjct: 21  MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVV 80

Query: 191 YRLLGKWEEAAVDLRNACKID 211
           ++   + + A  + R A   D
Sbjct: 81  FQTEMEPKLADEEYRKALASD 101

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 53.4 bits (129), Expect = 9e-09
 Identities = 10/87 (11%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK--INPDSAAAY 184
            + + A   Y +A+  +  +A +    G    +  +     +    A +  + P+ +  +
Sbjct: 85  MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF 144

Query: 185 KFRGRAYRLLGKWEEAAVDLRNACKID 211
           +  G     + K  +A      + +++
Sbjct: 145 ENLGLVSLQMKKPAQAKEYFEKSLRLN 171

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 7/64 (10%), Positives = 18/64 (28%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
           Y + ++  A   Y    +    +A       +        +          ++ P S   
Sbjct: 186 YKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245

Query: 184 YKFR 187
            +F+
Sbjct: 246 QEFQ 249

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 56.3 bits (137), Expect = 6e-11
 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 123 AYND-GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
           AY   G +++A+  Y +A++L+P++A  +   G +Y +    +  I     AL+++P++A
Sbjct: 18  AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77

Query: 182 AAYKFRGRAYRLLG 195
            A +  G A +  G
Sbjct: 78  EAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 44.7 bits (107), Expect = 1e-06
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 142 LNPS-SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA 200
           ++P  SA  +   G +Y +    +  I     AL+++P++A A+   G AY   G ++EA
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62

Query: 201 AVDLRNACKID 211
               + A ++D
Sbjct: 63  IEYYQKALELD 73

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 60.0 bits (145), Expect = 7e-11
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 18/135 (13%)

Query: 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAI-----------------KLNPSSALL 149
           EE I  ++ +K +    + + K E+A+  Y  AI                          
Sbjct: 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPC 232

Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
           +       ++L + +  I  C++ L     +  A   RG+A   LG+ + A  D R A K
Sbjct: 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292

Query: 210 ID-FDEQADEWLKEV 223
               D+     L+ +
Sbjct: 293 YAPDDKAIRRELRAL 307

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 16/155 (10%)

Query: 73  ESEESDPELDNTGVISEPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDA 132
           E +E D         S     +   D   D++  ++ +  S + K      +    +E A
Sbjct: 183 ELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMA 242

Query: 133 VNAYSEAI----------------KLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
           +  Y++ +                KL P +       G   L++S     +  C  AL+I
Sbjct: 243 IKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302

Query: 177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           +P +  A   R + ++ L ++++A  DL+ A +I 
Sbjct: 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 58.5 bits (141), Expect = 2e-10
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 15/121 (12%)

Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAI---------------KLNPSSALLY 150
           ++E ++++   K +    +  GK+  AV  Y + +                        +
Sbjct: 261 TKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320

Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
                 YL+L +    +  C  AL ++  +      RG A  L+ ++E A  D     ++
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380

Query: 211 D 211
           +
Sbjct: 381 N 381

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 125 NDGKFEDAVNAYSEAIK--LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA 182
              +  +++  + +A+     P+  +    +G    +  +          +L   P    
Sbjct: 89  RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148

Query: 183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQAD 217
           A+K   R   L G+  +A    +         QAD
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 9/102 (8%)

Query: 115 EKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNAC 166
           EK  +  +              +  A  +  +A+K +P + L +  R + Y  L   +  
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 167 IRDCSVALKINPDSAAAYKFRGRA-YRLLGKWEEAAVDLRNA 207
                 AL I PDSA      G      L +  E+      A
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA 103

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 13/69 (18%), Positives = 24/69 (34%)

Query: 143 NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAV 202
               + +  +    Y++             ALK +P +  A+  R   Y+ L   ++A  
Sbjct: 4   ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63

Query: 203 DLRNACKID 211
             R A  I 
Sbjct: 64  SFRQALSIK 72

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 57.3 bits (138), Expect = 7e-10
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 125 NDGKFEDAVNAYSEAIKLN---PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
           N    + A++AY++A K++    S+  L+  R   +         +   S A  ++P   
Sbjct: 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292

Query: 182 AAYKFRGRAYRLLGKWEEA 200
              +   +    L +    
Sbjct: 293 EPQQREQQLLEFLSRLTSL 311

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 52.7 bits (126), Expect = 3e-08
 Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 11/98 (11%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ--------LSKPNACIRDCSVALKIN- 177
               D+V     A++++      +   G +YL                +   + A K++ 
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252

Query: 178 --PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
               +   +  R   ++    + EA      A  +D  
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 10/128 (7%)

Query: 98  DVATDIEVSEEDIDKSNEKKREAIHAYN--------DGKF-EDAVNAYSEAIKLNPSSAL 148
           DV  ++E + + +++     +    A             +  +A    S+A+KL P    
Sbjct: 79  DVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138

Query: 149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208
            + + G+ Y +     +     S AL    +   + +      R L              
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMD 197

Query: 209 KIDFDEQA 216
            +   + A
Sbjct: 198 SVRQAKLA 205

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 48.5 bits (115), Expect = 6e-07
 Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 17/107 (15%)

Query: 122 HAYND-GKFEDAVNAYSEAIKLNPSSALLYAK--------RGQSYLQLSKPNACIRDCSV 172
             Y   G    A   +S A+    +   L                         +R   +
Sbjct: 145 EVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204

Query: 173 ALKINPDSAAAYKFRGRAY--------RLLGKWEEAAVDLRNACKID 211
           A++++     ++   G AY        +     ++A      A K+D
Sbjct: 205 AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD 251

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 127 GKFEDAVNAYSEAIKLN---PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
           G    AV  Y +AI         A  Y   G ++  L +        +  +K  P+  A 
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNA 207
             F       LG++E+    L   
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKI 87

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK----PNACIRDCSVALKINPDS 180
           N    ++A++   +AI+LNP +  L         ++ +         +    AL+  P  
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
               +   + YR   + ++A   L+ A +  
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY 184
              +  +      EA++  P    +     + Y +  +P+  I     AL+  P++A  +
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 185 KFRGRAYR-----LLGKWEEAAVDLRNA 207
              G  YR     ++   E      R  
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKL 312

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 17/134 (12%), Positives = 40/134 (29%), Gaps = 27/134 (20%)

Query: 107 EEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYL 158
           E+ ++++ EK                   + + A+    +A++  P++A L+ + G  Y 
Sbjct: 233 EKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292

Query: 159 Q-------------------LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEE 199
                               L      +     A + N +           + L  ++EE
Sbjct: 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352

Query: 200 AAVDLRNACKIDFD 213
           A    +     +  
Sbjct: 353 AEYYFQKEFSKELT 366

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.1 bits (122), Expect = 8e-08
 Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 7/99 (7%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL---SKPNACIRDCSVALKI 176
                   + E A   + +A++  P +    +    +  +L         I     A+++
Sbjct: 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204

Query: 177 NPDSAAAYKFRGRAY----RLLGKWEEAAVDLRNACKID 211
           NPD+                   +  E    +  A +  
Sbjct: 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
           Y     + A++ + E +K+N  S     K      +++K         + L  N   + A
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSRE-KEKMKDKLQKIAK---------MRLSKNGADSEA 432

Query: 184 YKFRGRAYRLLGKWEEAAVDLRNACKID 211
                    L  K ++A  D     +  
Sbjct: 433 LHVLAFLQELNEKMQQADEDSERGLESG 460

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 55.1 bits (132), Expect = 2e-09
 Identities = 14/86 (16%), Positives = 24/86 (27%)

Query: 122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
            A    K +DA   + E       + LL   +   ++   +  A       AL  +    
Sbjct: 175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234

Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNA 207
                     + LGK  E      + 
Sbjct: 235 ETLINLVVLSQHLGKPPEVTNRYLSQ 260

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 11/87 (12%), Positives = 21/87 (24%), Gaps = 2/87 (2%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL--SKPNACIRDCSVALKINPDSAAAY 184
            + + A     +    +  + L         L     K                 +    
Sbjct: 144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLL 203

Query: 185 KFRGRAYRLLGKWEEAAVDLRNACKID 211
             +   +   G+WE A   L+ A   D
Sbjct: 204 NGQAACHMAQGRWEAAEGVLQEALDKD 230

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 15/89 (16%), Positives = 33/89 (37%)

Query: 143 NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAV 202
           +P          Q +L+    +  +      ++ +PD    Y   G+ Y  L + ++A  
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 203 DLRNACKIDFDEQADEWLKEVTPNKLNLK 231
                 ++  +E   + L E+   KL  +
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAE 91

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 2/79 (2%)

Query: 124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA 183
                   A+  + E ++ +P     Y   G+ Y +L + +  I   +  +++  +    
Sbjct: 18  LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77

Query: 184 YKFR--GRAYRLLGKWEEA 200
                   A       E  
Sbjct: 78  KDLSELQDAKLKAEGLEHH 96

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 119 EAIHAYNDGKFEDAVNAYSEAIKLNP-SSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177
                 N G  E+A+ A  E ++  P      Y   G +Y +L      + +   A+++N
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 178 PDSAAAYKFRGRAYRLLGK 196
           PDS A       A +++  
Sbjct: 66  PDSPALQ-----ARKMVMD 79

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 13/96 (13%), Positives = 31/96 (32%)

Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN 177
           R  +         + +N  +  I+  P +  ++  R      L  P+  +   +  L  +
Sbjct: 137 RRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD 196

Query: 178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD 213
             +  A++ R    +    W+     +    K D  
Sbjct: 197 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 51.3 bits (122), Expect = 7e-08
 Identities = 11/104 (10%), Positives = 32/104 (30%), Gaps = 10/104 (9%)

Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC------- 170
            + +   +D     A     E ++ +P      A++    +     +             
Sbjct: 204 HDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263

Query: 171 ---SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
               V L    + +  Y+ +  +  + GK +E+   +     ++
Sbjct: 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 50.9 bits (121), Expect = 8e-08
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 3/106 (2%)

Query: 118 REAIHAYNDGKFEDAVNAYSEAIKL--NPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
           R + H  ++ +           + L    + +++Y  +  S L   K +   +  +  + 
Sbjct: 246 RHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID 305

Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221
           +   S   Y   G+ Y + G   EAA     A  +        W++
Sbjct: 306 LEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIE 350

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 49.5 bits (118), Expect = 9e-08
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPN------ACIRDCSVALKINPDS 180
             + +++ AY +A++L   +A LYA         +  +      A I     AL ++ + 
Sbjct: 58  NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK---ALALDSNE 114

Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221
             A         +   + +A    +    +D +       +
Sbjct: 115 ITALMLLASDAFMQANYAQAIELWQKV--MDLNSPRINRTQ 153

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 115 EKKREAIHAY-NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
           +++R+ +H + +    E  + A  + I+ NP ++  +A  G+ YL  +  +  +     A
Sbjct: 11  QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70

Query: 174 LKINPDSAAAYKFRGRAYRLLGK---WEEAAVDLRNACKID 211
           L++  ++A  Y                 +    +  A  +D
Sbjct: 71  LQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD 111

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 24/136 (17%)

Query: 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS------------SALLYAKRG 154
            +++  +     +A      G++++A      A++++ +             A  +A   
Sbjct: 5   LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 64

Query: 155 QSYLQLSKPNACIRDCSVALK-------INPDSAAAYKF----RGRAYRLLGKWEEAAVD 203
           ++   L   +  +     AL        +N D    +      R  A   LG+  EA  +
Sbjct: 65  EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124

Query: 204 LRNACKIDFDEQADEW 219
            +   ++  +E+  E 
Sbjct: 125 FKKVVEMI-EERKGET 139

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 119 EAIHAYNDGKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPNACIRDCSV 172
           E + +   G      N++    +         S  L  A  G+         A +     
Sbjct: 14  ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73

Query: 173 ALKIN----PDSAAAYKFRGRAYRLLGKWEEA 200
           A++         +A Y   G AY  LG + +A
Sbjct: 74  AIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKA 105

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 17/139 (12%), Positives = 46/139 (33%), Gaps = 16/139 (11%)

Query: 88  SEPDEEEPIPDVATDIEVSEEDIDKSNE---KKREAIHAYNDGKFEDAVNAYSEAIKL-- 142
              +E+  + D+  +I+  +  +    E        ++  +  ++  A+  + +A     
Sbjct: 75  MRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLI 134

Query: 143 ----NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI-------NPDSAAAYKFRGRAY 191
                   A  + K  +SY  + +    +     A +I       N      +      +
Sbjct: 135 FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194

Query: 192 RLLGKWEEAAVDLRNACKI 210
             L ++E+A    + A  +
Sbjct: 195 LDLKQYEDAISHFQKAYSM 213

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 40.9 bits (95), Expect = 8e-05
 Identities = 19/78 (24%), Positives = 23/78 (29%), Gaps = 10/78 (12%)

Query: 129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK----------PNACIRDCSVALKINP 178
           FE          K NP  A    + G   L+LS+              I     AL I+P
Sbjct: 18  FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77

Query: 179 DSAAAYKFRGRAYRLLGK 196
               A    G AY     
Sbjct: 78  KKDEAVWCIGNAYTSFAF 95

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 11/90 (12%)

Query: 122 HAYND-GKFEDAVNAYSEAIKLN----PSSALLYAKRGQSYLQLSKPNACIRDCSVALKI 176
                 G     V+ +  A+++      + + +Y++ G +Y  L      +      L +
Sbjct: 13  ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 72

Query: 177 ------NPDSAAAYKFRGRAYRLLGKWEEA 200
                     A A    G   ++LG ++EA
Sbjct: 73  ARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 118 REAIHAYNDGKFEDAVNAYSEAIKLN----PSSALLYAKRGQSYLQLSKPNACIRDCSVA 173
            E       G     V+ +  A+++      + + +Y++ G +Y  L      +      
Sbjct: 14  LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73

Query: 174 LKI------NPDSAAAYKFRGRAYRLLGKWEEA 200
           L +          A A    G   ++LG ++EA
Sbjct: 74  LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.9
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.88
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.85
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.84
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.83
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.82
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.82
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.82
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.81
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.79
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.76
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.75
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.74
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.74
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.74
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.73
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.73
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.73
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.73
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.73
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.72
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.72
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.71
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.71
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.7
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.69
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.69
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.69
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.69
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.69
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.68
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.68
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.67
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.66
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.66
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.66
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.65
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.65
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.64
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.63
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.62
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.61
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.61
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.57
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.57
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.56
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.55
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.55
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.55
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.55
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.54
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.53
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.53
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.53
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.52
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.52
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.52
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.52
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.52
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.52
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.51
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.51
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.51
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.51
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.5
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.5
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.5
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.5
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.5
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.49
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.49
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.49
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.48
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.48
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.48
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.48
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.47
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.47
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.46
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.46
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.46
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.46
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.46
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.46
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.45
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.45
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.45
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.44
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.44
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.43
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.43
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.42
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.42
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.41
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.41
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.41
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.41
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.4
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.4
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.38
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.37
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.35
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.35
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.34
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.34
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.33
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.32
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.31
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.31
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.31
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.31
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.3
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.3
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.3
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.3
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.29
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.29
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.29
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.28
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.28
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.27
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.27
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.27
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.27
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.26
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.26
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.25
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.25
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.25
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.24
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.23
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.23
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.23
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.23
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.22
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.22
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.22
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.22
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.21
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.21
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.21
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.2
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.2
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.19
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.19
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.18
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.17
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.17
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.17
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.16
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.16
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.16
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.16
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.16
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.15
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.15
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.15
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.14
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.13
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.13
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.12
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.12
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.09
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.09
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.08
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.07
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.07
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.03
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.98
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.98
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.97
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.96
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.92
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.9
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.89
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.89
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.88
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.84
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.83
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.81
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.75
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.74
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.67
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.67
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.66
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.62
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.47
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.45
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.43
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.39
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.38
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.36
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.26
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.25
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.25
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.24
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.23
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.1
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.09
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.08
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.02
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.97
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.97
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.93
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.93
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.89
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.75
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.66
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.57
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.42
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.9
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.81
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.78
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.65
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.56
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.51
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.51
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	96.41
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.19
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.92
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.57
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.52
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.47
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.27
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.19
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.95
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.78
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.87
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.03
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.71
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.31
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	90.72
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	90.26
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	90.11
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	88.41
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	87.12
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	86.87
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	85.01
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	84.78
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	84.36
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	84.33
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	83.89
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	82.05
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	81.8
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	81.71
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	80.79

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.90  E-value=2.6e-22  Score=145.45  Aligned_cols=116  Identities=20%  Similarity=0.432  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      +|+.+..++.+|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++.+|+.+|+++++++|.++.+|+++|
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   88 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA   88 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            56779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      .++..+|++++|+..|+++++++|++. +...+..+.
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999865 666665553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.88  E-value=3.5e-21  Score=144.03  Aligned_cols=121  Identities=12%  Similarity=0.009  Sum_probs=111.2

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481        104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA  183 (231)
Q Consensus       104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~  183 (231)
                      .+..-+++.+..++.+|..++..|+|++|+..|++++.++|+++.+|+++|.++..+|+|++|+.+|++++.++|+++.+
T Consensus        27 ~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~  106 (151)
T 3gyz_A           27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP  106 (151)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence            33445677789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVT  224 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~  224 (231)
                      |+++|.+|..+|++++|+..|++++++.|+....+..+...
T Consensus       107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~ll  147 (151)
T 3gyz_A          107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYL  147 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999987555444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.85  E-value=2.1e-20  Score=135.46  Aligned_cols=116  Identities=23%  Similarity=0.321  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-------  180 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~-------  180 (231)
                      ...+.+.++..+|+.++..|+|++|+.+|+++|+++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|.+       
T Consensus         3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~   82 (127)
T 4gcn_A            3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI   82 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence            4567788999999999999999999999999999999999999999999999999999999999999999876       


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481        181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV  223 (231)
Q Consensus       181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~  223 (231)
                      +.+|+++|.++..+|++++|+..|++++.+.|+......++++
T Consensus        83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~l  125 (127)
T 4gcn_A           83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHHHh
Confidence            3589999999999999999999999999999987766666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.5e-19  Score=129.87  Aligned_cols=117  Identities=24%  Similarity=0.342  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      ..+..++.+|..++..|+|++|+..|++++.++|+++.+|+++|.++..+|+|++|+.+|++++.++|+++.+|+++|.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcC------CCHH-HHHHHHhhchhh
Q psy13481        191 YRLLGKWEEAAVDLRNACKID------FDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~------p~~~-~~~~l~~~~~~~  227 (231)
                      +..+|++++|+..|++++.++      |++. +...+..+..++
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999999      8764 666666665543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.83  E-value=1.1e-19  Score=136.02  Aligned_cols=106  Identities=15%  Similarity=0.197  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-------SAL-----LYAKRGQSYLQLSKPNACIRDCSVALKI  176 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~Ai~~~~~al~~  176 (231)
                      +...+..++..|+.++..|+|++|+..|+++|+++|+       +..     +|.++|.++.++|+|++|+.+|+++|++
T Consensus         7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A            7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3556889999999999999999999999999999999       544     9999999999999999999999999999


Q ss_pred             -------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        177 -------NPDSAAAY----KFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       177 -------~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                             +|++..+|    +++|.++..+|++++|+.+|+++++++|++
T Consensus        87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                   99999999    999999999999999999999999999963

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.82  E-value=1.7e-19  Score=134.04  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=104.6

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      ....++.....++.+|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|+|++|+.+|++++.++|+++.++
T Consensus        13 al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   92 (148)
T 2vgx_A           13 LNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP   92 (148)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred             HHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            33445777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      +++|.++..+|++++|+..|+++++++|++
T Consensus        93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           93 FHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            999999999999999999999999999873

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.82  E-value=2.7e-19  Score=134.20  Aligned_cols=122  Identities=20%  Similarity=0.252  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL------------------NPSSALLYAKRGQSYLQLSKPNACIRD  169 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~Ai~~  169 (231)
                      +....+..+...|..++..|+|++|+..|++++.+                  +|.+..+|+++|.+|+++|+|.+|+.+
T Consensus         6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A            6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            34456889999999999999999999999999999                  777889999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH--HHHHHHhhchhhhc
Q psy13481        170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ--ADEWLKEVTPNKLN  229 (231)
Q Consensus       170 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~l~~~~~~~~k  229 (231)
                      |++++.++|.++.+|+.+|.+|..+|++++|+.+|++++.++|++.  +...+..+...+++
T Consensus        86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999865  46666666665543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.82  E-value=2.3e-19  Score=131.96  Aligned_cols=120  Identities=13%  Similarity=0.114  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ..++.....++.+|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|+|++|+.+|++++.++|+++.++++
T Consensus        12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   91 (142)
T 2xcb_A           12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH   91 (142)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN  226 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~  226 (231)
                      +|.++..+|++++|+..|++++.++|++. ...+..++...
T Consensus        92 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  132 (142)
T 2xcb_A           92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM  132 (142)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            99999999999999999999999998643 34444444333

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.81  E-value=3.9e-19  Score=132.31  Aligned_cols=120  Identities=11%  Similarity=-0.015  Sum_probs=108.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      ....++....++.+|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+
T Consensus        24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  103 (150)
T 4ga2_A           24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL  103 (150)
T ss_dssp             SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence            34567778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHH-HHHHHhcCCCHH-HHHHHHhhch
Q psy13481        186 FRGRAYRLLGKWEEAAVD-LRNACKIDFDEQ-ADEWLKEVTP  225 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~-~~~al~l~p~~~-~~~~l~~~~~  225 (231)
                      ++|.++..+|++++|... ++++++++|++. +.....++..
T Consensus       104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A          104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            999999999999887765 599999999875 5555555543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.79  E-value=1.1e-18  Score=131.20  Aligned_cols=107  Identities=16%  Similarity=0.280  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      ....+..++.+|..++..|+|++|+..|++++.++|++..+|+++|.+|+.+|+|++|+.+|++++.++|.++.+|+++|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .+|..+|++++|+.+|++++.++|++.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~  113 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGG  113 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCch
Confidence            999999999999999999999999853

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.76  E-value=9.9e-18  Score=120.26  Aligned_cols=101  Identities=13%  Similarity=0.056  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481        115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL  194 (231)
Q Consensus       115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~  194 (231)
                      .++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|++++.++|+++.+++.+|.++..+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCHH
Q psy13481        195 GKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       195 g~~~~A~~~~~~al~l~p~~~  215 (231)
                      |++++|+..|+++++++|++.
T Consensus        99 g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHhCcCCC
Confidence            999999999999999999753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.75  E-value=2.8e-17  Score=118.95  Aligned_cols=116  Identities=24%  Similarity=0.436  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      .+..++..|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|+|++|+..|++++.++|.++.+++.+|.++
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC------HHHHHHHHhhchhh
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFD------EQADEWLKEVTPNK  227 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~------~~~~~~l~~~~~~~  227 (231)
                      ..+|++++|+..|++++.++|+      ..+...+..+..+.
T Consensus        88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887      34666666655443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.74  E-value=3.2e-17  Score=140.09  Aligned_cols=118  Identities=14%  Similarity=0.038  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK-PNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      .++.+.++..+|.++...|++++|+..|+++|.++|++..+|+++|.++..+|+ +++|+.+|++++.++|++..+|+++
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~  172 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  172 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            344566677777777777777777777777777777777777777777777775 7777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN  226 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~  226 (231)
                      |.++..+|++++|+.+|++++.++|++. ++..+..+...
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~  212 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE  212 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence            7777777777777777777777777643 44444444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.74  E-value=2.9e-16  Score=111.53  Aligned_cols=123  Identities=30%  Similarity=0.411  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ...+..+..++.+|..++..|++++|+..|++++..+|++..++..+|.++...|++.+|+..+++++.++|.++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            35677789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLN  229 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k  229 (231)
                      +|.++..+|++++|+..|++++.++|++. +...+..+...+++
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999754 66666666655544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.74  E-value=1.2e-16  Score=134.13  Aligned_cols=122  Identities=20%  Similarity=0.276  Sum_probs=111.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHH
Q psy13481        106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---------------ALLYAKRGQSYLQLSKPNACIRDC  170 (231)
Q Consensus       106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~Ai~~~  170 (231)
                      ....+..+..++.+|..++..|+|++|+..|++++.++|++               ..+|+++|.++.++|+|.+|+.+|
T Consensus       140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  219 (336)
T 1p5q_A          140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC  219 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35678889999999999999999999999999999999998               699999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481        171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       171 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~  227 (231)
                      ++++.++|.++.+|+++|.+|..+|++++|+.+|+++++++|++. +...+..+...+
T Consensus       220 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~  277 (336)
T 1p5q_A          220 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  277 (336)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999854 555555555443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.73  E-value=2.2e-16  Score=110.29  Aligned_cols=112  Identities=28%  Similarity=0.453  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      .+..++..|..++..|++++|+..|++++..+|++..++.++|.++...|++++|+..+++++.++|.++.+++.+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      ..+|++++|...|++++.++|++. +...+..+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            999999999999999999999864 44444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.73  E-value=1.3e-16  Score=124.76  Aligned_cols=118  Identities=18%  Similarity=0.202  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy13481        107 EEDIDKSNEKKR----------------EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC  170 (231)
Q Consensus       107 ~~~~~~a~~~~~----------------~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~  170 (231)
                      ..+++.+..++.                +|.++...|++++|+..|+++++++|++..+|+++|.++..+|++++|+.+|
T Consensus        32 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  111 (208)
T 3urz_A           32 ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMY  111 (208)
T ss_dssp             HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            445666777777                9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHc-----------------------------------CCHHHHHHHHHHHHhcCCCHH
Q psy13481        171 SVALKINPDSAAAYKFRGRAYRLL-----------------------------------GKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       171 ~~al~~~p~~~~~~~~lg~~~~~~-----------------------------------g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ++++.++|+++.+|+++|.+|+..                                   |++++|+.+|+++++++|+..
T Consensus       112 ~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          112 EKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999988888776443                                   468899999999999999987


Q ss_pred             HHHHHHhhc
Q psy13481        216 ADEWLKEVT  224 (231)
Q Consensus       216 ~~~~l~~~~  224 (231)
                      +...+..+.
T Consensus       192 ~~~~l~~i~  200 (208)
T 3urz_A          192 AQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.73  E-value=1.1e-16  Score=113.92  Aligned_cols=119  Identities=18%  Similarity=0.262  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------HHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-------AAAY  184 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~~~  184 (231)
                      .+..++.+|..++..|++++|+..|++++..+|++..+++++|.++...|++.+|+..|++++.++|.+       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999999887       8999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhhcc
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLNL  230 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~k~  230 (231)
                      +.+|.++..+|++++|+..|++++.+.|+......+..+...+++.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999877888888887776654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.73  E-value=2.2e-16  Score=122.06  Aligned_cols=122  Identities=19%  Similarity=0.192  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA----------------LLYAKRGQSYLQLSKPNACIRDC  170 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~Ai~~~  170 (231)
                      ......+..++..|..++..|+|++|+..|++++.+.|+++                .+|+++|.++..+|+|.+|+.+|
T Consensus        32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            45677889999999999999999999999999999999887                89999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481        171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKL  228 (231)
Q Consensus       171 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~  228 (231)
                      ++++.++|.++.+++.+|.++..+|++++|+..|++++.++|++. +...+..+...+.
T Consensus       112 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A          112 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999754 6666666655543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.73  E-value=6.5e-17  Score=148.36  Aligned_cols=104  Identities=20%  Similarity=0.214  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      |+.+.++..+|..+...|++++|+..|+++++++|+++.+|+++|.+|.++|++++|+..|+++++++|+++.+|+++|.
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN   85 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ++..+|++++|+..|+++++++|+
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~  109 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA  109 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Confidence            555555555555555555555554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.72  E-value=1.6e-16  Score=138.66  Aligned_cols=122  Identities=17%  Similarity=0.279  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---------------ALLYAKRGQSYLQLSKPNACIRDCS  171 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~Ai~~~~  171 (231)
                      ...+..+..++.+|..++..|+|.+|+..|++++.++|++               ..+|+++|.||+++|+|.+|+.+|+
T Consensus       262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  341 (457)
T 1kt0_A          262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD  341 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            5677889999999999999999999999999999999998               7999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481        172 VALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKL  228 (231)
Q Consensus       172 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~  228 (231)
                      +++.++|++..+|+++|.+|..+|+|++|+.+|+++++++|++. +...+..+...++
T Consensus       342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~  399 (457)
T 1kt0_A          342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK  399 (457)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999865 5555555554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.72  E-value=1.2e-16  Score=124.80  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHhh
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAK----------------RGQSYLQLSKPNACIRDCSVALKI  176 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~Ai~~~~~al~~  176 (231)
                      +..+...|..++..|+|++|+..|++++..+|+++.+|+.                +|.++..+|++++|+..|++++.+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5678899999999999999999999999999999999999                999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q psy13481        177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLK  221 (231)
Q Consensus       177 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~  221 (231)
                      +|+++.+++++|.++..+|++++|+..|+++++++|++. +...+.
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg  129 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG  129 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999854 443333

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.71  E-value=2.7e-16  Score=112.40  Aligned_cols=116  Identities=22%  Similarity=0.385  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      .....++.+|..++..|++++|+..|++++..+|++..+++++|.++...|++++|+..+++++.++|.+..+++.+|.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCH-HHHHHHHhhchh
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFDE-QADEWLKEVTPN  226 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~  226 (231)
                      +..+|++++|+..|++++.++|++ .+...+..+...
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            999999999999999999999975 356656555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.71  E-value=5.1e-16  Score=111.05  Aligned_cols=102  Identities=19%  Similarity=0.149  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA---LLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYKFR  187 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~l  187 (231)
                      ..++..|..++..|+|++|+..|++++..+|++.   .+++.+|.+++..|+|++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3567899999999999999999999999999988   899999999999999999999999999999999   8999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      |.++..+|++++|+..|++++..+|++.
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~  110 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSD  110 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence            9999999999999999999999999855

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.71  E-value=1.6e-16  Score=124.96  Aligned_cols=102  Identities=20%  Similarity=0.202  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCC
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL-----------SKPNACIRDCSVALKINP  178 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-----------~~~~~Ai~~~~~al~~~p  178 (231)
                      ++.+..++.+|..+...|++++|+..|+++++++|+++.+|+++|.++..+           |++++|+..|++++.++|
T Consensus        36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P  115 (217)
T 2pl2_A           36 PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP  115 (217)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc
Confidence            334555566666666666666666666666666666666666666666666           666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       179 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      +++.+++++|.++..+|++++|+..|+++++++
T Consensus       116 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A          116 RYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            666666666666666666666666666666665

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=5.8e-16  Score=112.85  Aligned_cols=112  Identities=21%  Similarity=0.377  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +..++..|..++..|+|++|+..|++++..+|++   ..+|+++|.++...|+|++|+..|++++.++|.++.+++.+|.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            6788999999999999999999999999999988   8999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      ++..+|++++|+..|++++.++|++. +...+..+.
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            99999999999999999999999854 566555554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.69  E-value=2.3e-15  Score=111.70  Aligned_cols=109  Identities=26%  Similarity=0.443  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ......+..++.+|..++..|++++|+..|.+++..+|++..+++++|.++...|+|.+|+..+++++.++|.++.+++.
T Consensus         7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   86 (166)
T 1a17_A            7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   86 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +|.++..+|++++|+..|++++.++|++.
T Consensus        87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           87 RAASNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            99999999999999999999999999754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.69  E-value=6.5e-17  Score=120.68  Aligned_cols=102  Identities=24%  Similarity=0.187  Sum_probs=92.0

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481        125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKP----------NACIRDCSVALKINPDSAAAYKFRGRAYRLL  194 (231)
Q Consensus       125 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~  194 (231)
                      +.+.|++|+..|+++++++|+++.+|+++|.++..++++          ++|+..|++||.++|++..+|+++|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            346899999999999999999999999999999999886          4999999999999999999999999999988


Q ss_pred             C-----------CHHHHHHHHHHHHhcCCCHHHHHHHHhhchh
Q psy13481        195 G-----------KWEEAAVDLRNACKIDFDEQADEWLKEVTPN  226 (231)
Q Consensus       195 g-----------~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~  226 (231)
                      |           ++++|+.+|++|++++|++.......++.++
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~k  136 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK  136 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            5           8999999999999999998766555555444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.69  E-value=2.9e-16  Score=144.06  Aligned_cols=121  Identities=23%  Similarity=0.213  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      .-+++.+.++..+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.+|++
T Consensus        37 ~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~  116 (723)
T 4gyw_A           37 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN  116 (723)
T ss_dssp             HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34455688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~  227 (231)
                      +|.+|..+|++++|+..|+++++++|++. +...+..+...+
T Consensus       117 Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~  158 (723)
T 4gyw_A          117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV  158 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence            99999999999999999999999999854 555555554443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.69  E-value=1.7e-16  Score=135.65  Aligned_cols=120  Identities=13%  Similarity=0.089  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGK-FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      ..+++...+|+.+|.++...|+ +++|+..|++++.++|++..+|+++|.++..+|++.+|+.+|+++|.++|++..+|+
T Consensus       125 ~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~  204 (382)
T 2h6f_A          125 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ  204 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHH
Confidence            3456678899999999999997 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481        186 FRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN  226 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~  226 (231)
                      ++|.++..+|++++|+.+|+++++++|++. ++..+..+...
T Consensus       205 ~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999854 66555555444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.69  E-value=2.5e-17  Score=122.45  Aligned_cols=109  Identities=9%  Similarity=0.059  Sum_probs=96.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy13481        119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWE  198 (231)
Q Consensus       119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  198 (231)
                      +|..+..+|++++|+..|++++..+|+++..++.+|.+|+.+|+|++|+.+|+++++++|+++.+|+++|.+|..+|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            57777888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481        199 EAAVDLRNACKIDFDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       199 ~A~~~~~~al~l~p~~~-~~~~l~~~~~~~  227 (231)
                      +|+..|+++++++|++. +...+..+..+.
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~  112 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKN  112 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999999999999854 555555554443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.68  E-value=1.4e-15  Score=115.68  Aligned_cols=103  Identities=22%  Similarity=0.227  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+...|..+...++++.|+..+.+++.++|++..++..+|.++..+|+|++|+..|+++++++|.++.+|+++|.+|.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~  152 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE  152 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .+|++++|+..|++|++++|++.
T Consensus       153 ~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          153 GKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HCCCHHHHHHHHHHHHhCCccCH
Confidence            99999999999999999999763

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.68  E-value=8.1e-16  Score=130.86  Aligned_cols=122  Identities=20%  Similarity=0.321  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIK----------------LNPSSALLYAKRGQSYLQLSKPNACIRDC  170 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~----------------~~p~~~~~~~~la~~~~~~~~~~~Ai~~~  170 (231)
                      ......+..++.+|..++..|+|++|+..|+++++                .+|.+..+|+++|.+|+++|+|++|+.+|
T Consensus       217 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  296 (370)
T 1ihg_A          217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC  296 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            34566788899999999999999999999999999                78888999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481        171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKL  228 (231)
Q Consensus       171 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~  228 (231)
                      ++++.++|.++.+|+++|.+|..+|++++|+..|+++++++|++. +...+..+...++
T Consensus       297 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          297 LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999754 6666666655443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.67  E-value=8.9e-16  Score=120.70  Aligned_cols=118  Identities=17%  Similarity=0.132  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481        107 EEDIDKSNEKKREAIHAYND-----------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK  175 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~-----------~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~  175 (231)
                      ..+++....++.+|..+...           |++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++++.
T Consensus        67 ~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  146 (217)
T 2pl2_A           67 ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA  146 (217)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            34455667788888888888           8888888888888888888888888888888888888888888888888


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481        176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTP  225 (231)
Q Consensus       176 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~  225 (231)
                      ++ +++.+++++|.++..+|++++|+..|+++++++|++. +...+..+..
T Consensus       147 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~  196 (217)
T 2pl2_A          147 LE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL  196 (217)
T ss_dssp             HC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred             cc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            88 8888888888888888888888888888888888754 4444444443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.67  E-value=3.2e-15  Score=113.55  Aligned_cols=114  Identities=20%  Similarity=0.262  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----------------
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK-----------------  175 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~-----------------  175 (231)
                      +..++.+|..+...|+|++|+..|+++++++|+++.+|.++|.++..+|++++|+..+.+++.                 
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            456677777777777777777777777777777777777777777777776666655555544                 


Q ss_pred             -----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481        176 -----------------INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN  226 (231)
Q Consensus       176 -----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~  226 (231)
                                       ++|.+..++..+|.++..+|++++|+..|+++++++|++. +...+..+...
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence                             4555555566666666666666666666666666666543 44444444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.66  E-value=7.3e-16  Score=116.67  Aligned_cols=109  Identities=15%  Similarity=0.144  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHhhCCCCHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQS-YLQLSKP--NACIRDCSVALKINPDSAAA  183 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~Ai~~~~~al~~~p~~~~~  183 (231)
                      ...+.....++.+|..++..|++++|+..|++++.++|+++.++.++|.+ +...|++  ++|+..|++++.++|.+..+
T Consensus        38 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~  117 (177)
T 2e2e_A           38 RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA  117 (177)
T ss_dssp             HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHH
Confidence            34455678999999999999999999999999999999999999999999 8899999  99999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ++.+|.++..+|++++|+..|++++.++|++.
T Consensus       118 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          118 LMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            99999999999999999999999999999864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.66  E-value=9.8e-15  Score=102.64  Aligned_cols=112  Identities=23%  Similarity=0.397  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..++.+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++.++|.+..+++.+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      ..|++++|...|++++.++|++. +...+..+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            99999999999999999999754 444444443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.66  E-value=3.2e-16  Score=108.52  Aligned_cols=102  Identities=18%  Similarity=0.352  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAAAYKFRGRA  190 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~lg~~  190 (231)
                      +..++.+|..++..|++++|+..|++++..+|.+..+|+++|.++...|++++|+..+++++.++|.  +..+++.+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999999999999999999999999999  99999999999


Q ss_pred             HHHc-CCHHHHHHHHHHHHhcCCCH
Q psy13481        191 YRLL-GKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       191 ~~~~-g~~~~A~~~~~~al~l~p~~  214 (231)
                      +..+ |++++|+.++++++...|++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999 99999999999999999864

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.65  E-value=4.2e-16  Score=130.96  Aligned_cols=117  Identities=23%  Similarity=0.330  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA-----------------LLYAKRGQSYLQLSKPNACIRD  169 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~Ai~~  169 (231)
                      ...+..+..++.+|..++..|+|.+|+..|++++.+.|++.                 .+|+++|.+|+++|+|.+|+.+
T Consensus       173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~  252 (338)
T 2if4_A          173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            46678899999999999999999999999999999999877                 4999999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       170 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      |++++.++|.+..+|+++|.+|..+|++++|+.+|+++++++|++. +...+..+
T Consensus       253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999865 55555544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.65  E-value=5.3e-15  Score=116.27  Aligned_cols=103  Identities=24%  Similarity=0.221  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP-SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      +..++..|..++..|+|++|+..|++++.++| .+..+++++|.++..+|+|++|+..|++++.++|.+..+++.+|.++
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            47889999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ..+|++++|+..|+++++++|++.
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~  110 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNA  110 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcH
Confidence            999999999999999999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.64  E-value=1.6e-15  Score=124.05  Aligned_cols=102  Identities=26%  Similarity=0.482  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..++.+|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|+|++|+.+|++++.++|++..+++++|.++.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+|++++|+..|+++++++|++
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999864

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.63  E-value=4.4e-16  Score=110.45  Aligned_cols=91  Identities=21%  Similarity=0.164  Sum_probs=83.6

Q ss_pred             HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481        125 NDGKFEDAVNAYSEAIKL---NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA  201 (231)
Q Consensus       125 ~~~~~~~Ai~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  201 (231)
                      ..|++++|+..|++++++   +|++..+|+++|.++..+|+|++|+..|++++.++|+++.+++++|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   59999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCHH
Q psy13481        202 VDLRNACKIDFDEQ  215 (231)
Q Consensus       202 ~~~~~al~l~p~~~  215 (231)
                      ..|++++.+.|++.
T Consensus        82 ~~~~~al~~~p~~~   95 (117)
T 3k9i_A           82 ELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHHCCCH
T ss_pred             HHHHHHHHhCCCcH
Confidence            99999999999865

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.63  E-value=1.3e-14  Score=114.05  Aligned_cols=101  Identities=22%  Similarity=0.283  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-------HHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-------AAYK  185 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-------~~~~  185 (231)
                      ...++.+|.++...|++++|+..|++++..+|++..+|.++|.++..+|++.+|+..|++++.++|+++       .+|+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  121 (228)
T 4i17_A           42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYL  121 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            457777999999999999999999999999999999999999999999999999999999999999999       6799


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        186 FRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      .+|.++..+|++++|+..|+++++++|+
T Consensus       122 ~~g~~~~~~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A          122 KEGQKFQQAGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred             HHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999998

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.62  E-value=1.5e-14  Score=112.24  Aligned_cols=102  Identities=20%  Similarity=0.159  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-----------
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-----------  181 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-----------  181 (231)
                      +..++.+|..+...|++++|+..|++++.++|++..+|+++|.++..+|+|++|+..|++++.+.|.+.           
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  116 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  116 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence            468899999999999999999999999999999999999999999999999999999999999888876           


Q ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        182 -----AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       182 -----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                           .+++++|.++..+|++++|+..|++++.++|++
T Consensus       117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                 999999999999999999999999999999974

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.61  E-value=2.8e-14  Score=112.91  Aligned_cols=115  Identities=24%  Similarity=0.350  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      .+.....+..+|..++..|++++|+..|++++..+|++..+|.++|.++...|++++|+..|++++.++|+++.+++.+|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  214 (258)
T 3uq3_A          135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA  214 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcC------CCHH-HHHHHHhh
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKID------FDEQ-ADEWLKEV  223 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~------p~~~-~~~~l~~~  223 (231)
                      .++..+|++++|+..|+++++++      |++. +...+.++
T Consensus       215 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          215 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999999999999999999      8754 44444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.61  E-value=3.3e-14  Score=113.80  Aligned_cols=107  Identities=20%  Similarity=0.145  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      .+..+..++.+|..++..|++++|+..|++++..+|++..+|..+|.++...|++++|+..|++++.++|.++.+++.+|
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .++..+|++++|+..|+++++++|++.
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999999865

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.57  E-value=1.6e-15  Score=113.11  Aligned_cols=97  Identities=4%  Similarity=-0.136  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       132 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      +-..|++++.++|++..+++++|.+++..|+|++|+..|++++.++|.++.+|+++|.++..+|+|++|+.+|+++++++
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            34567888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHH-HHHHHHhhchhhh
Q psy13481        212 FDEQ-ADEWLKEVTPNKL  228 (231)
Q Consensus       212 p~~~-~~~~l~~~~~~~~  228 (231)
                      |++. ++..+..+...++
T Consensus       101 P~~~~~~~~lg~~~~~lg  118 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLK  118 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHHcC
Confidence            9853 5555555554443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.57  E-value=1.8e-14  Score=101.45  Aligned_cols=85  Identities=15%  Similarity=0.231  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481        130 EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK  209 (231)
Q Consensus       130 ~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  209 (231)
                      ..|+..|+++++.+|+++.+|+++|.++...|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|++++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCH
Q psy13481        210 IDFDE  214 (231)
Q Consensus       210 l~p~~  214 (231)
                      ++|+.
T Consensus        82 ~~~~~   86 (115)
T 2kat_A           82 AAQSR   86 (115)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            98853

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.56  E-value=3.7e-15  Score=103.55  Aligned_cols=95  Identities=16%  Similarity=0.321  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS------AAAYK  185 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~  185 (231)
                      .+..++.+|..++..|+|++|+..|++++.++|+++.+|+++|.++..+|+|++|+.+|++++.++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999999999999999999999      89999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q psy13481        186 FRGRAYRLLGKWEEAAVDLRN  206 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~~  206 (231)
                      .+|.++..+|+++.|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999988877765543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.55  E-value=5.8e-14  Score=117.54  Aligned_cols=102  Identities=18%  Similarity=0.281  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      .+..+..+|..+...|++++|+..|+++++.+|+++.+|+++|.++...|++++|+..|++++.++|+++.+++++|.+|
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ..+|++++|+..|++++.++|+
T Consensus       292 ~~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          292 INLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999987

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.55  E-value=8.4e-15  Score=128.55  Aligned_cols=113  Identities=27%  Similarity=0.422  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      ..+..++.+|..++..|+|++|+..|+++++++|+++.+|+++|.++.++|+|++|+..|+++++++|.++.+++++|.+
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44667778888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      |..+|++++|+..|+++++++|++. +...+..+
T Consensus        84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999753 44444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.55  E-value=6.1e-14  Score=125.05  Aligned_cols=119  Identities=15%  Similarity=0.046  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ..++..+..++.+|..+...|++++|+..|+++++++|++..+|+++|.++..+|++++|+..|++++.++|++..++++
T Consensus        17 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   96 (568)
T 2vsy_A           17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW   96 (568)
T ss_dssp             ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            34455578899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481        187 RGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTP  225 (231)
Q Consensus       187 lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~  225 (231)
                      +|.++..+|++++|+..|+++++++|++. +...+..+..
T Consensus        97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  136 (568)
T 2vsy_A           97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR  136 (568)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999754 4444444433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.55  E-value=2.6e-13  Score=96.22  Aligned_cols=99  Identities=26%  Similarity=0.411  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481        115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL  194 (231)
Q Consensus       115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~  194 (231)
                      .++.+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHhcCCC
Q psy13481        195 GKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       195 g~~~~A~~~~~~al~l~p~  213 (231)
                      |++++|+..|.+++...|+
T Consensus        83 ~~~~~A~~~~~~~~~~~~~  101 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPR  101 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTT
T ss_pred             cCHHHHHHHHHHHHHhCCC
Confidence            6666666666666666664

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.54  E-value=8.9e-14  Score=111.64  Aligned_cols=104  Identities=14%  Similarity=0.100  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---AAAYK  185 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~  185 (231)
                      .+..++.+|..++..|+|++|+..|++++..+|++   ..+++.+|.+++.+|+|.+|+..|++++.++|++   ..+++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            36789999999999999999999999999999999   9999999999999999999999999999998855   67899


Q ss_pred             HHHHHHHH--------cCCHHHHHHHHHHHHhcCCCHH
Q psy13481        186 FRGRAYRL--------LGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       186 ~lg~~~~~--------~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .+|.++..        +|++++|+..|++++..+|++.
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            99999999        9999999999999999999853

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.54  E-value=1.3e-13  Score=108.24  Aligned_cols=115  Identities=17%  Similarity=0.129  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      .+.....+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++.++|.+..+++.+|
T Consensus        53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  132 (243)
T 2q7f_A           53 NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG  132 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34446788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      .++...|++++|+..|++++.++|++. +...+..+
T Consensus       133 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  168 (243)
T 2q7f_A          133 TVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC  168 (243)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            999999999999999999999988643 33333333

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.53  E-value=5.2e-13  Score=100.03  Aligned_cols=102  Identities=17%  Similarity=0.167  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|.+..++..+|.++.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  121 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD  121 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ..|++++|+..|++++..+|++
T Consensus       122 ~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A          122 NLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HcCcHHHHHHHHHHHHhcCccc
Confidence            8888888888888888888764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.53  E-value=2e-13  Score=113.92  Aligned_cols=117  Identities=16%  Similarity=0.192  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      .+..+..+|..+...|++++|+..|++++.++|+++.+|+++|.++...|++++|+..|++++.++|.++.+++.+|.++
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  295 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCH------------HHHHHHHhhchhhh
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFDE------------QADEWLKEVTPNKL  228 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~~------------~~~~~l~~~~~~~~  228 (231)
                      ..+|++++|+..|++++.++|++            .++..+..+...+.
T Consensus       296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  344 (368)
T 1fch_A          296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG  344 (368)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence            99999999999999999999875            35555555554443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.53  E-value=3.1e-13  Score=95.77  Aligned_cols=101  Identities=26%  Similarity=0.410  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+...|..+...|++++|+..|++++...|.+..+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++.
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  114 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY  114 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC
Q psy13481        193 LLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ..|++++|...|.+++.++|+
T Consensus       115 ~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          115 KQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHccHHHHHHHHHHHHccCCC
Confidence            999999999999999999886

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.53  E-value=4.4e-14  Score=101.80  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=79.9

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-H
Q psy13481        138 EAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-A  216 (231)
Q Consensus       138 ~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~  216 (231)
                      ++..++|+.+..+.++|.++++.|+|++|+..|+++++++|.++.+|+++|.++..+|++++|+..|+++++++|++. +
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            345689999999999999999999999999999999999999999999999999999999999999999999999854 5


Q ss_pred             HHHHHhhchhhh
Q psy13481        217 DEWLKEVTPNKL  228 (231)
Q Consensus       217 ~~~l~~~~~~~~  228 (231)
                      +..+..+...++
T Consensus        84 ~~~lg~~~~~~~   95 (126)
T 4gco_A           84 YIRKAACLVAMR   95 (126)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCC
Confidence            555655554443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.52  E-value=4.1e-13  Score=110.93  Aligned_cols=114  Identities=27%  Similarity=0.346  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL----LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ....|..+...|++++|+..|++++...|++..    ++..+|.++...|++++|+..|++++.++|.++.+++.+|.++
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            345688899999999999999999999999874    4667999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLN  229 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k  229 (231)
                      ..+|++++|+..|+++++++|++. +...+..+...+++
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999854 77777777766654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.52  E-value=2.1e-13  Score=105.63  Aligned_cols=100  Identities=20%  Similarity=0.226  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      .+..++.+|..++..|+|++|+..|++++  .| ++.+|+++|.++..+|++.+|+..|++++.++|.++.+++++|.++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            46678899999999999999999999995  44 7899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ..+|++++|+..|++++.+.|++
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~  104 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGN  104 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HHcccHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999988863

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.52  E-value=3.1e-13  Score=115.88  Aligned_cols=112  Identities=21%  Similarity=0.327  Sum_probs=103.4

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q psy13481        104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAA  183 (231)
Q Consensus       104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~  183 (231)
                      .+...++..+..++.+|..++..|++++|+..|++++..+|++..+|+.+|.++..+|++.+|+..|++++.++|.+..+
T Consensus        17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~   96 (450)
T 2y4t_A           17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA   96 (450)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            34456677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ++.+|.+|..+|++++|+..|++++.++|++.
T Consensus        97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            99999999999999999999999999999864

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.52  E-value=6.8e-14  Score=122.54  Aligned_cols=115  Identities=12%  Similarity=0.082  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHh
Q psy13481        113 SNEKKREAIHAYND---------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL--------SKPNACIRDCSVALK  175 (231)
Q Consensus       113 a~~~~~~a~~~~~~---------~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~Ai~~~~~al~  175 (231)
                      ...+..+|..+...         |++++|+..|+++++++|++..+|+++|.+|..+        |++++|+..|++++.
T Consensus       170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~  249 (474)
T 4abn_A          170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK  249 (474)
T ss_dssp             HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence            36788899999999         9999999999999999999999999999999999        999999999999999


Q ss_pred             hCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481        176 INP---DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       176 ~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~  227 (231)
                      ++|   .++.+|+++|.+|..+|++++|+..|+++++++|++. +...+..+...+
T Consensus       250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l  305 (474)
T 4abn_A          250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL  305 (474)
T ss_dssp             HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999   9999999999999999999999999999999999854 455555544443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.52  E-value=3.1e-14  Score=130.05  Aligned_cols=101  Identities=12%  Similarity=-0.007  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...++.+|..++..|++++|+..|+++++++|++..+|+++|.++..+|+|++ +.+|+++++++|++..+|+++|.++.
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            34444444455555555555555555555555555555555555555555555 55555555555555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+|++++|+..|+++++++|++
T Consensus       546 ~~g~~~~A~~~~~~al~l~P~~  567 (681)
T 2pzi_A          546 AEGDRVGAVRTLDEVPPTSRHF  567 (681)
T ss_dssp             HTTCHHHHHHHHHTSCTTSTTH
T ss_pred             HcCCHHHHHHHHHhhcccCccc
Confidence            5555555555555555555543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=3.5e-13  Score=106.53  Aligned_cols=115  Identities=20%  Similarity=0.190  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCChHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIK--------------------------LNPSSALLYAKRGQSYLQLSKPNAC  166 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~~~~~~A  166 (231)
                      +..+..+|..+...|++++|+..|++++.                          .+|.+..++..+|.++...|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            68889999999999999999999999999                          6777889999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481        167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       167 i~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~  227 (231)
                      +..|++++.++|.++.+++.+|.++..+|++++|+..|++++.++|++. +...+..+....
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  220 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV  220 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999854 555555554433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.51  E-value=7.2e-13  Score=102.55  Aligned_cols=98  Identities=22%  Similarity=0.231  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      .+..+..+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++.++|.+..++..+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            34555555555666666666666666666666655555666666666666666666666666666655555555566666


Q ss_pred             HHc-CCHHHHHHHHHHHHh
Q psy13481        192 RLL-GKWEEAAVDLRNACK  209 (231)
Q Consensus       192 ~~~-g~~~~A~~~~~~al~  209 (231)
                      ... |++++|+..|++++.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHT
T ss_pred             HHhcCcHHHHHHHHHHHHc
Confidence            665 666666666665555

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.51  E-value=3.8e-13  Score=111.12  Aligned_cols=101  Identities=22%  Similarity=0.336  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ++..++..|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++.++|.+..+++.+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCC
Q psy13481        192 RLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p  212 (231)
                      ...|++++|+..|+++++++|
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCC
T ss_pred             HHcCChHHHHHHHHHHHhcCC
Confidence            999999999999999999999

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.51  E-value=2.2e-14  Score=131.00  Aligned_cols=117  Identities=12%  Similarity=-0.020  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ++.+..++.+|..++..|++++|+..|+++++.+|++..+|+++|.++..+|+|++|+..|++++.++|+++.+|+++|.
T Consensus       430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~  509 (681)
T 2pzi_A          430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAA  509 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~  227 (231)
                      ++..+|++++ +..|+++++++|++. ++..+..+...+
T Consensus       510 ~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~  547 (681)
T 2pzi_A          510 TAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAE  547 (681)
T ss_dssp             HHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc
Confidence            9999999999 999999999999854 555555554443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.51  E-value=2.3e-13  Score=113.84  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..++.+|..++..|++++|+..|++++..+|++..+|+.+|.++..+|++++|+..|++++.++|.+..+++.+|.+|.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT  144 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .+|++++|+..|+++++++|++.
T Consensus       145 ~~g~~~~A~~~~~~al~~~p~~~  167 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQNPKYK  167 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCccch
Confidence            99999999999999999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.50  E-value=2.9e-13  Score=110.83  Aligned_cols=119  Identities=15%  Similarity=0.154  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH--------------------
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRD--------------------  169 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~--------------------  169 (231)
                      +.....+..+|..+...|++++|+..|+++++.+|++..+++++|.++...|++++|+..                    
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            345677889999999999999999999999999999999999999999999998876544                    


Q ss_pred             --------------HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH---HHHHHHHhhchhhh
Q psy13481        170 --------------CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE---QADEWLKEVTPNKL  228 (231)
Q Consensus       170 --------------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~l~~~~~~~~  228 (231)
                                    +++++..+|+++.+++++|.++...|++++|+..|+++++.+|++   .+...+..+...+.
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence                          556678899999999999999999999999999999999999975   36666666655544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.50  E-value=2.2e-13  Score=102.06  Aligned_cols=105  Identities=18%  Similarity=0.230  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      .....+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.+
T Consensus        74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  153 (186)
T 3as5_A           74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS  153 (186)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +..+|++++|...|++++.++|++.
T Consensus       154 ~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          154 YEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCch
Confidence            9999999999999999999988753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.50  E-value=2.7e-13  Score=106.83  Aligned_cols=103  Identities=15%  Similarity=0.109  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA---AYKF  186 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~  186 (231)
                      +..++.+|..++..|+|++|+..|++++..+|++   ..+++.+|.+++.+|+|++|+..|++++.++|++..   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            5678999999999999999999999999999987   479999999999999999999999999999999875   8999


Q ss_pred             HHHHHHH------------------cCCHHHHHHHHHHHHhcCCCHH
Q psy13481        187 RGRAYRL------------------LGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       187 lg~~~~~------------------~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +|.++..                  .|++++|+..|+++++.+|++.
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            9999987                  5799999999999999999854

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.50  E-value=3.9e-13  Score=113.51  Aligned_cols=105  Identities=20%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ++....+..+|..+...|++++|+..|+++++++|+++.+|+++|.++...|++++|+..|++++.++|.++.++..+|.
T Consensus       234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  313 (388)
T 1w3b_A          234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN  313 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence            33456666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ++...|++++|+..|+++++++|++
T Consensus       314 ~~~~~g~~~~A~~~~~~al~~~p~~  338 (388)
T 1w3b_A          314 IKREQGNIEEAVRLYRKALEVFPEF  338 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            7777777777777777777777763

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.50  E-value=6e-13  Score=88.90  Aligned_cols=85  Identities=22%  Similarity=0.402  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      ..+..++.+|..++..|++++|+..|++++..+|++..+++++|.++...|++++|+..|++++.++|.+..++.++|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcC
Q psy13481        191 YRLLG  195 (231)
Q Consensus       191 ~~~~g  195 (231)
                      +..+|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.50  E-value=1.1e-12  Score=103.07  Aligned_cols=113  Identities=13%  Similarity=0.090  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ....+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++.++|.+..+++.+|.++
T Consensus        90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  169 (243)
T 2q7f_A           90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL  169 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            34566667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      ...|++++|+..|++++..+|++. ....+..+.
T Consensus       170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  203 (243)
T 2q7f_A          170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY  203 (243)
T ss_dssp             HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            777777777777777777777632 333343333

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.49  E-value=6.9e-13  Score=108.42  Aligned_cols=103  Identities=18%  Similarity=0.281  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      .....+..+|..+...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++.++|.+..+++.+|.+
T Consensus       170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            34678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      +..+|++++|+..|++++.++|+
T Consensus       250 ~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          250 YSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhccHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999998

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.49  E-value=1.3e-13  Score=110.59  Aligned_cols=118  Identities=17%  Similarity=0.149  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHH
Q psy13481        111 DKSNEKKREAIHAYN--------DGKFEDAVNAYSEAIKLNPSSALLY-----------------AKRGQSYLQLSKPNA  165 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~--------~~~~~~Ai~~~~~al~~~p~~~~~~-----------------~~la~~~~~~~~~~~  165 (231)
                      ....+++.+|.+++.        .|++++|+..|++++..+|++..++                 +.+|.+|...|+|.+
T Consensus        87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  166 (261)
T 3qky_A           87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA  166 (261)
T ss_dssp             THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence            346788999999999        9999999999999999999986665                 889999999999999


Q ss_pred             HHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCHH----HHHHHHhhchhhh
Q psy13481        166 CIRDCSVALKINPD---SAAAYKFRGRAYRLL----------GKWEEAAVDLRNACKIDFDEQ----ADEWLKEVTPNKL  228 (231)
Q Consensus       166 Ai~~~~~al~~~p~---~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~l~p~~~----~~~~l~~~~~~~~  228 (231)
                      |+..|++++..+|+   ...+++.+|.+|..+          |++++|+..|+++++.+|++.    +...+..+...+.
T Consensus       167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~  246 (261)
T 3qky_A          167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLT  246 (261)
T ss_dssp             HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence            99999999999998   467999999999988          999999999999999999853    4555555554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.49  E-value=5.3e-13  Score=112.72  Aligned_cols=105  Identities=15%  Similarity=0.099  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +..+..+..+|..+...|++++|+..|++++.++|++..+|.++|.++...|++++|+..|++++.++|+++.++.++|.
T Consensus       166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  245 (388)
T 1w3b_A          166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC  245 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence            33456666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ++...|++++|+..|++++.++|++
T Consensus       246 ~~~~~g~~~~A~~~~~~al~~~p~~  270 (388)
T 1w3b_A          246 VYYEQGLIDLAIDTYRRAIELQPHF  270 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            7777777777777777777777753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.48  E-value=4.9e-14  Score=104.36  Aligned_cols=96  Identities=7%  Similarity=-0.024  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        131 DAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       131 ~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                      .+-..|++++.++|++..+++++|.+++..|+|.+|+..|++++.++|.++.+|+++|.++..+|++++|+..|++++.+
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34456889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHH-HHHHHHhhchh
Q psy13481        211 DFDEQ-ADEWLKEVTPN  226 (231)
Q Consensus       211 ~p~~~-~~~~l~~~~~~  226 (231)
                      +|++. +.-.+..+...
T Consensus        85 ~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             STTCTHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHH
Confidence            99853 44444444433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.48  E-value=1.2e-12  Score=103.66  Aligned_cols=105  Identities=10%  Similarity=0.099  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK--INPDSAAAYKFR  187 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~--~~p~~~~~~~~l  187 (231)
                      +.....+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++.  .+|.+..+++.+
T Consensus        68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  147 (252)
T 2ho1_A           68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL  147 (252)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH
Confidence            334556666666667777777777777777777776666777777777777777777777777766  666666666777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      |.++...|++++|+..|++++.++|++
T Consensus       148 a~~~~~~g~~~~A~~~~~~~~~~~~~~  174 (252)
T 2ho1_A          148 GLVSLQMKKPAQAKEYFEKSLRLNRNQ  174 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence            777777777777777777777766653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.48  E-value=8.3e-13  Score=114.67  Aligned_cols=103  Identities=20%  Similarity=0.288  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ...+..++..|..++..|+|++|+..|++++..+| ++.+|.++|.++..+|++++|+..|++++.++|.+..+++.+|.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            35688999999999999999999999999999999 69999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ++..+|++++|+..|++++.++|.
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~  105 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDF  105 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999985

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.48  E-value=6.7e-13  Score=106.23  Aligned_cols=112  Identities=12%  Similarity=0.150  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..+..+|..+...|++++|+..|++++..+|++..+|.++|.++..+|++++|+..|++++.++|.++.+++++|...+
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  153 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999996566


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      ..+++++|+..|+++++++|++. +..++..+.
T Consensus       154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  186 (272)
T 3u4t_A          154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARAN  186 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            66799999999999999999853 444444433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.47  E-value=2.3e-13  Score=119.20  Aligned_cols=112  Identities=14%  Similarity=0.090  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKF-EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~-~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      .+..++.+|..++..|+| ++|+..|+++++++|++..+|+++|.+|...|++++|+.+|++++.++|+ ..+++++|.+
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~  179 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMV  179 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHH
Confidence            478899999999999999 99999999999999999999999999999999999999999999999999 7999999999


Q ss_pred             HHHc---------CCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        191 YRLL---------GKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       191 ~~~~---------g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      +..+         |++++|+..|+++++++|++. ++..+..+.
T Consensus       180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  223 (474)
T 4abn_A          180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAY  223 (474)
T ss_dssp             HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999         999999999999999999854 454444444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.47  E-value=1.2e-12  Score=109.15  Aligned_cols=102  Identities=15%  Similarity=0.166  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..++.+|..++..|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|++++.++|.++.+++.+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+|++++|+..|++++.++|++
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~  165 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAY  165 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTT
T ss_pred             HcCCHHHHHHHHHHHHHhCcCc
Confidence            9999999999999999999974

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.46  E-value=1.7e-13  Score=94.51  Aligned_cols=73  Identities=15%  Similarity=0.237  Sum_probs=64.5

Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       142 ~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+|+++.+|+++|.+++..|+|++|+..|++++.++|+++.+|+.+|.+|..+|++++|+..|++++.+.|..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            4788999999999999999999999999999999999999999999999999999999999999999987753

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.46  E-value=1.2e-12  Score=107.59  Aligned_cols=95  Identities=15%  Similarity=0.021  Sum_probs=80.6

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHH
Q psy13481        124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEE-AAV  202 (231)
Q Consensus       124 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~~  202 (231)
                      ...|++++|+..|++++..+|+++.+|+++|.++.++|++++|+..|++++.++|+++.+++++|.++..+|++.+ +..
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~  256 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR  256 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            3458888888888888888888888899999999999999999999999999999999999999999989998876 567


Q ss_pred             HHHHHHhcCCCHHHHH
Q psy13481        203 DLRNACKIDFDEQADE  218 (231)
Q Consensus       203 ~~~~al~l~p~~~~~~  218 (231)
                      +++++++++|++....
T Consensus       257 ~~~~~~~~~P~~~~~~  272 (291)
T 3mkr_A          257 YLSQLKDAHRSHPFIK  272 (291)
T ss_dssp             HHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHhCCCChHHH
Confidence            8888999999876333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.46  E-value=1.6e-12  Score=100.49  Aligned_cols=101  Identities=16%  Similarity=0.087  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHh--hCCCCHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL-SKPNACIRDCSVALK--INPDSAAAYKFRGR  189 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~Ai~~~~~al~--~~p~~~~~~~~lg~  189 (231)
                      ...+..+|..+...|++++|+..|++++..+|++..++..+|.++... |++++|+..+++++.  .+|.+..+++.+|.
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  121 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI  121 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence            345555666666666666666666666666666666666666666666 666666666666666  44444556666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ++...|++++|+..|+++++.+|+
T Consensus       122 ~~~~~~~~~~A~~~~~~~~~~~~~  145 (225)
T 2vq2_A          122 CSAKQGQFGLAEAYLKRSLAAQPQ  145 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Confidence            666666666666666666666655

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.46  E-value=8e-13  Score=100.10  Aligned_cols=124  Identities=17%  Similarity=0.091  Sum_probs=101.5

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCHH
Q psy13481        104 EVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYL-QLSKPNACIRDCSVALKINPDSAA  182 (231)
Q Consensus       104 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~Ai~~~~~al~~~p~~~~  182 (231)
                      .....+++....++.+|..+...|++++|+..|++++..+| ++..+..++.+.. ..+....|+..+++++.++|+++.
T Consensus        31 ~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~  109 (176)
T 2r5s_A           31 TLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFE  109 (176)
T ss_dssp             TSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHH
Confidence            44566778888899999999999999999999999999999 7777666665433 334455689999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH---HHHHHHHhhchhhh
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE---QADEWLKEVTPNKL  228 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~l~~~~~~~~  228 (231)
                      +++.+|.++...|++++|+..|+++++++|+.   .+...+..+...+.
T Consensus       110 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g  158 (176)
T 2r5s_A          110 LACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG  158 (176)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999863   35666666655443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.46  E-value=4.9e-13  Score=109.48  Aligned_cols=113  Identities=19%  Similarity=0.230  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLN---------PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA  182 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~---------p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~  182 (231)
                      ....+..+|..+...|++++|+..|++++...         |....++.++|.++...|++++|+..|++++.++|.+..
T Consensus       192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  271 (330)
T 3hym_B          192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAS  271 (330)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred             ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchH
Confidence            35667777888888888888888888888775         566678888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      +++.+|.++..+|++++|+..|+++++++|++. +...+..+.
T Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          272 TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            888888888888888888888888888888644 444444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.46  E-value=6.3e-13  Score=116.32  Aligned_cols=106  Identities=25%  Similarity=0.384  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      .....+..++.+|..++..|+|++|+..|++++..+|+++.+|+++|.++..+|++.+|+..|++++.++|++..+++.+
T Consensus        20 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   99 (537)
T 3fp2_A           20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR   99 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            34557899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      |.++..+|++++|+..|+ ++.++|+.
T Consensus       100 a~~~~~~g~~~~A~~~~~-~~~~~~~~  125 (537)
T 3fp2_A          100 ASANESLGNFTDAMFDLS-VLSLNGDF  125 (537)
T ss_dssp             HHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred             HHHHHHcCCHHHHHHHHH-HHhcCCCC
Confidence            999999999999999996 88888874

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.45  E-value=4e-13  Score=107.56  Aligned_cols=102  Identities=12%  Similarity=0.142  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      ....+..+|..++..|++++|+..|++++. .|.+    ..+|..+|.++..+|++++|+..|++++.++|.++.++..+
T Consensus        36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  114 (272)
T 3u4t_A           36 SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI  114 (272)
T ss_dssp             CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            344566667777777777777777777776 3322    34467777777777777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        188 GRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      |.++..+|++++|+..|++++.++|++
T Consensus       115 ~~~~~~~~~~~~A~~~~~~al~~~~~~  141 (272)
T 3u4t_A          115 GSYFYNKGNFPLAIQYMEKQIRPTTTD  141 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred             HHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence            777777777777777777777777654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.45  E-value=1.3e-12  Score=102.91  Aligned_cols=115  Identities=17%  Similarity=0.162  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------cCChHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL---LYAKRGQSYLQ------------------LSKPNACIRDCS  171 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~la~~~~~------------------~~~~~~Ai~~~~  171 (231)
                      ..+++.+|.+++..|+|++|+..|+++++.+|++..   +++.+|.++..                  .|++++|+..|+
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  120 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS  120 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence            467889999999999999999999999999998854   89999999987                  578999999999


Q ss_pred             HHHhhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH----HHHHHHhhchhh
Q psy13481        172 VALKINPDSAAAY-----------------KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ----ADEWLKEVTPNK  227 (231)
Q Consensus       172 ~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~l~~~~~~~  227 (231)
                      +++..+|++..++                 +.+|.+|...|++++|+..|+++++.+|++.    +...+..+..++
T Consensus       121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  197 (225)
T 2yhc_A          121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM  197 (225)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence            9999999987654                 5789999999999999999999999999853    344455444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.45  E-value=1.8e-12  Score=108.66  Aligned_cols=99  Identities=14%  Similarity=0.144  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      .+..+..+|.+++..|+|++|+..|+++++++|++..+|+++|.+|..+|+|++|+.+|++++.++|.+..++..+|.++
T Consensus       195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  274 (336)
T 1p5q_A          195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHH-HHHHHHHHhc
Q psy13481        192 RLLGKWEEA-AVDLRNACKI  210 (231)
Q Consensus       192 ~~~g~~~~A-~~~~~~al~l  210 (231)
                      ..+|++++| ...|++.+..
T Consensus       275 ~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          275 QRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            999999999 5577777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.44  E-value=1.3e-12  Score=106.84  Aligned_cols=114  Identities=16%  Similarity=0.057  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDG-KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      +.....+..+|..+...| ++++|+..|++++..+|++..+|..+|.++...|++++|+..|++++.++|.+..++..+|
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  166 (330)
T 3hym_B           87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG  166 (330)
T ss_dssp             TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            344677888999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      .++...|++++|+..|++++.++|++. +...+..+
T Consensus       167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~  202 (330)
T 3hym_B          167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV  202 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            999999999999999999999998753 44444333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.44  E-value=4e-12  Score=100.64  Aligned_cols=102  Identities=9%  Similarity=-0.015  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..++.++.
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (252)
T 2ho1_A          141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAK  220 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ..|++++|...+++++.++|++
T Consensus       221 ~~g~~~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          221 VFEDRDTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HccCHHHHHHHHHHHHHHCCCC
Confidence            5555555555555555555554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.43  E-value=4.6e-12  Score=108.53  Aligned_cols=107  Identities=29%  Similarity=0.402  Sum_probs=98.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSA----LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...|..+...|++++|+..|++++...|++.    .++.++|.++.+.|++++|+..|++++.++|+++.+|+.+|.++.
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  340 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL  340 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4459999999999999999999999999984    488999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      ..|++++|+..|+++++++|++. +...+..+
T Consensus       341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  372 (450)
T 2y4t_A          341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKA  372 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            99999999999999999999854 55555544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.43  E-value=2e-12  Score=95.68  Aligned_cols=102  Identities=17%  Similarity=0.139  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +.....+..+|..+...|++++|+..|++++..+|++..+|+++|.++..+|++++|+..|++++.++|.+..++..++.
T Consensus        44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~  123 (166)
T 1a17_A           44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  123 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34467889999999999999999999999999999999999999999999999999999999999999999998855555


Q ss_pred             H--HHHcCCHHHHHHHHHHHHhcC
Q psy13481        190 A--YRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       190 ~--~~~~g~~~~A~~~~~~al~l~  211 (231)
                      +  +...|++++|+..+.++..+.
T Consensus       124 ~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          124 CNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccchHHHh
Confidence            5  888999999999999876553

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.42  E-value=3.1e-13  Score=92.25  Aligned_cols=90  Identities=19%  Similarity=0.233  Sum_probs=81.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy13481        117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL-LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG  195 (231)
Q Consensus       117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g  195 (231)
                      +..|..++..|++++|+..|++++..+|++.. +|+++|.++..+|++++|+..|++++.++|++..++.+        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            56888999999999999999999999999999 99999999999999999999999999999999988754        5


Q ss_pred             CHHHHHHHHHHHHhcCCCH
Q psy13481        196 KWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       196 ~~~~A~~~~~~al~l~p~~  214 (231)
                      .+.+++..|+++...+|++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHhccCccc
Confidence            6778888888888877764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.42  E-value=7.5e-13  Score=99.92  Aligned_cols=103  Identities=18%  Similarity=0.190  Sum_probs=89.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HH
Q psy13481        123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA-YRLLGKW--EE  199 (231)
Q Consensus       123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~--~~  199 (231)
                      +...|++++|+..|++++..+|++..+|+.+|.++...|++.+|+..|++++.++|.++.+++.+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999 8899999  99


Q ss_pred             HHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481        200 AAVDLRNACKIDFDEQ-ADEWLKEVTP  225 (231)
Q Consensus       200 A~~~~~~al~l~p~~~-~~~~l~~~~~  225 (231)
                      |+..|++++.++|++. +...+..+..
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~  126 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAF  126 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            9999999999999854 4444444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.41  E-value=5.2e-12  Score=103.16  Aligned_cols=102  Identities=13%  Similarity=0.051  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...++.+|..++..|++++|+..|++++..+|++..+|..+|.++...|++++|+..+++++.++|.+..++..+|.++.
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT  100 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ..|++++|+..|++++.++|++
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~  122 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQY  122 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTT
T ss_pred             HcCCHHHHHHHHHHHHHhCCcc
Confidence            9999999999999999999874

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.41  E-value=6.6e-12  Score=100.30  Aligned_cols=103  Identities=17%  Similarity=0.233  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----------
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA----------  181 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~----------  181 (231)
                      ....+..+|..+...|++++|+..|++++.++|++..++.++|.++..+|++++|+..|++++.++|.+.          
T Consensus        76 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  155 (275)
T 1xnf_A           76 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE  155 (275)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            3678889999999999999999999999999999999999999999999999999999999999998874          


Q ss_pred             ------------------------------------------------------------HHHHHHHHHHHHcCCHHHHH
Q psy13481        182 ------------------------------------------------------------AAYKFRGRAYRLLGKWEEAA  201 (231)
Q Consensus       182 ------------------------------------------------------------~~~~~lg~~~~~~g~~~~A~  201 (231)
                                                                                  .+++.+|.++..+|++++|+
T Consensus       156 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  235 (275)
T 1xnf_A          156 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT  235 (275)
T ss_dssp             HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence                                                                        56778899999999999999


Q ss_pred             HHHHHHHhcCCCH
Q psy13481        202 VDLRNACKIDFDE  214 (231)
Q Consensus       202 ~~~~~al~l~p~~  214 (231)
                      ..|++++.++|++
T Consensus       236 ~~~~~al~~~p~~  248 (275)
T 1xnf_A          236 ALFKLAVANNVHN  248 (275)
T ss_dssp             HHHHHHHTTCCTT
T ss_pred             HHHHHHHhCCchh
Confidence            9999999999964

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.41  E-value=2.7e-12  Score=114.44  Aligned_cols=103  Identities=12%  Similarity=0.066  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ....+..+|..+...|++++|+..|+++++++|++..+++++|.++..+|++++|+..|+++++++|.+..++.++|.++
T Consensus        56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  135 (568)
T 2vsy_A           56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR  135 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHc---CCHHHHHHHHHHHHhcCCCH
Q psy13481        192 RLL---GKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       192 ~~~---g~~~~A~~~~~~al~l~p~~  214 (231)
                      ..+   |++++|...|+++++.+|++
T Consensus       136 ~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          136 RRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHhhccccHHHHHHHHHHHHhcCCcc
Confidence            999   99999999999999999874

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.41  E-value=1.6e-12  Score=106.42  Aligned_cols=103  Identities=15%  Similarity=-0.019  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH--
Q psy13481        112 KSNEKKREAIHAYND-GKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA--  182 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~-~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~--  182 (231)
                      .+..+..+|.++... |++++|+.+|++++.+.|..      ..++.++|.++..+|+|++|+..|++++.+.|.+..  
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  195 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence            366888999999996 99999999999999998754      578999999999999999999999999999987653  


Q ss_pred             -----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        183 -----AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       183 -----~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                           +++++|.++..+|++++|+..|++++.++|+.
T Consensus       196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence                 68999999999999999999999999999974

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.40  E-value=5.3e-13  Score=97.60  Aligned_cols=93  Identities=14%  Similarity=0.045  Sum_probs=80.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        134 NAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       134 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ..|.+++.++|++...++.+|.+++..|+|.+|+..|++++.++|.++.+|+.+|.++..+|++++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HH-HHHHHHhhchh
Q psy13481        214 EQ-ADEWLKEVTPN  226 (231)
Q Consensus       214 ~~-~~~~l~~~~~~  226 (231)
                      +. +...+..+...
T Consensus        85 ~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           85 EPRFPFHAAECHLQ   98 (142)
T ss_dssp             CTHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHH
Confidence            54 44444444433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.40  E-value=8.1e-12  Score=102.55  Aligned_cols=111  Identities=11%  Similarity=-0.046  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRG--QSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la--~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      .....+..+|..+...|++++|+..|+++++.+|++.......|  .++...|++++|+..|++++..+|.++.+++++|
T Consensus       128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la  207 (291)
T 3mkr_A          128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA  207 (291)
T ss_dssp             CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34568888999999999999999999999999999864433333  2333458999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLK  221 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~  221 (231)
                      .++..+|++++|...|++++.++|++. +...+.
T Consensus       208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~  241 (291)
T 3mkr_A          208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV  241 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            999999999999999999999999864 443333

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.38  E-value=3e-12  Score=104.89  Aligned_cols=104  Identities=14%  Similarity=0.053  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC---
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQL-SKPNACIRDCSVALKINPDS---  180 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~Ai~~~~~al~~~p~~---  180 (231)
                      ..+..+..+|.++...|++++|+.+|++++.+.+..      +.++.++|.+|... |++++|+.+|++++.+.|.+   
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            447889999999999999999999999999997754      56899999999996 99999999999999998854   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        181 ---AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       181 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                         ..++.++|.++..+|++++|+..|++++.+.|++
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence               5679999999999999999999999999999874

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.37  E-value=1.4e-11  Score=109.28  Aligned_cols=113  Identities=21%  Similarity=0.228  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL------NPSS-ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~------~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      +...+..+|..+...|++++|+..|++++..      +|++ ..+|..+|.++.+.|++++|+..|+++++++|.++.+|
T Consensus       474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  553 (597)
T 2xpi_A          474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH  553 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence            3566778888888888999999988888888      6654 78888889999999999999999999998888888899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      ..+|.+|...|++++|...|+++++++|++. +...+..+.
T Consensus       554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL  594 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            9999999999999999999999999988754 555555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.35  E-value=4.4e-12  Score=91.21  Aligned_cols=69  Identities=13%  Similarity=0.164  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+.++.++|.++++.|+|++|+.+|+++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            467889999999999999999999999999999999999999999999999999999999999998863

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.35  E-value=1.4e-11  Score=86.96  Aligned_cols=86  Identities=9%  Similarity=0.022  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      ++.....+..+|.+++..|+|++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++..+|.++.+.....
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999998765444


Q ss_pred             HHHHHc
Q psy13481        189 RAYRLL  194 (231)
Q Consensus       189 ~~~~~~  194 (231)
                      .+....
T Consensus       103 ai~~~~  108 (117)
T 3k9i_A          103 AILFYA  108 (117)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            444333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.34  E-value=8.3e-12  Score=109.16  Aligned_cols=100  Identities=19%  Similarity=0.288  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..+..+|..+...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..|++++.++|.++.++..+|.++.
T Consensus       243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            334444444444444444444444444444444 4444444444444444444444444444444444444444444444


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC
Q psy13481        193 LLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ..|++++|+..|++++.++|+
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~  342 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPE  342 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT
T ss_pred             hcCCHHHHHHHHHHHHHhCCC
Confidence            444444444444444444443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.34  E-value=8.5e-12  Score=99.52  Aligned_cols=102  Identities=23%  Similarity=0.226  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI----  176 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~----  176 (231)
                      .+..+..+..+|..++..|++++|+..|++++.+        .|....++.++|.++...|++++|+..|++++.+    
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            3667889999999999999999999999999988        4666889999999999999999999999999998    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        177 ----NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       177 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                          +|....++.++|.++..+|++++|+..|++++.+
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                4667889999999999999999999999999998

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.33  E-value=1.1e-11  Score=87.54  Aligned_cols=88  Identities=19%  Similarity=0.154  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +.....+..+|..+...|++++|+..|.+++..+|++..+++.+|.++..+|++++|+..+++++.++|.+..++..+|.
T Consensus        43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  122 (131)
T 2vyi_A           43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI  122 (131)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            33467889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCH
Q psy13481        190 AYRLLGKW  197 (231)
Q Consensus       190 ~~~~~g~~  197 (231)
                      ++..+|++
T Consensus       123 ~~~~~~~~  130 (131)
T 2vyi_A          123 AELKLREA  130 (131)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHhcC
Confidence            99999875

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.33  E-value=4.8e-13  Score=117.37  Aligned_cols=107  Identities=18%  Similarity=0.164  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ..++..+..+..+|..+...|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++..++..
T Consensus        34 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  113 (477)
T 1wao_1           34 ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK  113 (477)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHH
T ss_pred             HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34455688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH--HHHcCCHHHHHHHHH-----------HHHhcCCC
Q psy13481        187 RGRA--YRLLGKWEEAAVDLR-----------NACKIDFD  213 (231)
Q Consensus       187 lg~~--~~~~g~~~~A~~~~~-----------~al~l~p~  213 (231)
                      ++.+  +...|++++|+..++           +++.++|+
T Consensus       114 l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1          114 YQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence            9999  889999999999999           88887765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.32  E-value=1e-11  Score=92.49  Aligned_cols=90  Identities=14%  Similarity=0.083  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-AAYKFR  187 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~~~l  187 (231)
                      ++..+..+..+|.+++..|+|++|+..+++++.++|+++.+|+++|.+|..+|+|++|+.+|++++.++|++. .+...+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            5666789999999999999999999999999999999999999999999999999999999999999999999 677788


Q ss_pred             HHHHHHcCCHH
Q psy13481        188 GRAYRLLGKWE  198 (231)
Q Consensus       188 g~~~~~~g~~~  198 (231)
                      +.+...++++.
T Consensus       139 ~~~~~~~~~~~  149 (162)
T 3rkv_A          139 KIVTERRAEKK  149 (162)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            88776665443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.31  E-value=3.9e-11  Score=103.52  Aligned_cols=103  Identities=15%  Similarity=0.048  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL---------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN------  177 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------  177 (231)
                      +..+..+|.++...|++++|+..|++|+++         +|....+|.++|.+|..+|+|++|+.++++++.+.      
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            456778999999999999999999999986         67788899999999999999999999999999874      


Q ss_pred             --CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCHH
Q psy13481        178 --PDSAAAYKFRGRAYRLLG--KWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       178 --p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~  215 (231)
                        +..+.++.++|+++...|  +|++|+.+|++++.++|++.
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~  172 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP  172 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence              456788999998887765  69999999999999999854

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.31  E-value=1.7e-11  Score=106.86  Aligned_cols=91  Identities=16%  Similarity=0.152  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..+..+|.+++..|+|++|+..|++++.++|++..+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHH
Q psy13481        193 LLGKWEEAAVD  203 (231)
Q Consensus       193 ~~g~~~~A~~~  203 (231)
                      .+|++++|.+.
T Consensus       397 ~~~~~~~a~~~  407 (457)
T 1kt0_A          397 KAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.31  E-value=2.7e-11  Score=107.47  Aligned_cols=105  Identities=15%  Similarity=0.126  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      .....+..+|..+...|++++|+..|+++++.+|.+..+|+.+|.+|.+.|++++|+..|++++..+|.+..+|..+|.+
T Consensus       371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  450 (597)
T 2xpi_A          371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ  450 (597)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            34667788888999999999999999999999999999999999999999999999999999999999888999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      |...|++++|+..|++++.++|++.
T Consensus       451 ~~~~g~~~~A~~~~~~~~~~~~~~~  475 (597)
T 2xpi_A          451 HMQLGNILLANEYLQSSYALFQYDP  475 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCCCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999888743

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.31  E-value=2.2e-12  Score=97.65  Aligned_cols=112  Identities=7%  Similarity=-0.077  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...++..|..++..|++++|+..|+++++.+|+++.+|+++|.++...|++++|+..|++++..+| ++..+..++.+..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~   84 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL   84 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence            345778999999999999999999999999999999999999999999999999999999999999 8887776665533


Q ss_pred             -HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhch
Q psy13481        193 -LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTP  225 (231)
Q Consensus       193 -~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~  225 (231)
                       ..++...|+..|+++++++|++. +...+..+..
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~  119 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYN  119 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence             33344568999999999999854 4444444443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.30  E-value=2.8e-12  Score=107.50  Aligned_cols=102  Identities=12%  Similarity=0.068  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH-HH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA-YR  192 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~-~~  192 (231)
                      ..+..+|.+++..|+|++|+..|++++.++|++..+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.+ ..
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999998 55


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ..+..+.+...|.+++...|++.
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCC
Confidence            66788889999999999999865

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.30  E-value=1.8e-11  Score=94.10  Aligned_cols=97  Identities=10%  Similarity=0.075  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+..+|.+++..|+|++|+..|++++.++|++..+++++|.++..+|+|++|+..|++++.++|.+..++..++.++.
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHH-HHHHHHHh
Q psy13481        193 LLGKWEEAA-VDLRNACK  209 (231)
Q Consensus       193 ~~g~~~~A~-~~~~~al~  209 (231)
                      .+++..++. ..|.+.+.
T Consensus       168 ~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          168 KLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999988887 44554443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.30  E-value=1.2e-11  Score=98.74  Aligned_cols=104  Identities=16%  Similarity=0.154  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI----  176 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~----  176 (231)
                      .+..+..+..+|..+...|++++|+.+|.+++.+        +|....++.++|.++..+|++++|+..|++++.+    
T Consensus        81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            3667889999999999999999999999999998        5777899999999999999999999999999999    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        177 ----NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       177 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                          .|....++.++|.++..+|++++|+..|++++.+.+
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                677788999999999999999999999999998743

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.30  E-value=4.1e-11  Score=82.73  Aligned_cols=69  Identities=12%  Similarity=0.145  Sum_probs=66.8

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ++.+|+.+|.+++..|+|.+|+..|++++.++|.++.+++++|.++..+|++++|+..|++++.++|++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            467899999999999999999999999999999999999999999999999999999999999999986

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.29  E-value=2.1e-11  Score=86.77  Aligned_cols=86  Identities=10%  Similarity=0.124  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN------PDSAA  182 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------p~~~~  182 (231)
                      ++.....+..+|.+++..|+|++|+..|+++++++|++..+|+++|.++..+|++++|+.+|++++.++      |.+..
T Consensus        34 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~  113 (126)
T 3upv_A           34 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE  113 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred             CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHH
Confidence            344578899999999999999999999999999999999999999999999999999999999999999      99999


Q ss_pred             HHHHHHHHHHHc
Q psy13481        183 AYKFRGRAYRLL  194 (231)
Q Consensus       183 ~~~~lg~~~~~~  194 (231)
                      ++..++.+...+
T Consensus       114 ~~~~l~~~~~~l  125 (126)
T 3upv_A          114 IDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999988887643

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.29  E-value=2.5e-11  Score=99.96  Aligned_cols=105  Identities=16%  Similarity=0.032  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYN-------DGKF-------EDAVNAYSEAIK-LNPSSALLYAKRGQSYLQLSKPNACIRDCSVA  173 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~-------~~~~-------~~Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~a  173 (231)
                      ++..+..|+.+|..+..       .|++       ++|+..|++++. ++|++..+|.++|.++...|++++|+..|+++
T Consensus        46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  125 (308)
T 2ond_A           46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  125 (308)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            44556677777766653       4664       788888888888 68888888888888888888888888888888


Q ss_pred             HhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        174 LKINPDSAA-AYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       174 l~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      +.++|.++. +|..+|.++...|++++|...|+++++++|.
T Consensus       126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~  166 (308)
T 2ond_A          126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  166 (308)
T ss_dssp             HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred             HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence            888887775 7888888888888888888888888877775

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.29  E-value=3.2e-11  Score=104.58  Aligned_cols=105  Identities=13%  Similarity=0.047  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCChHHHHHHHHHHHhhCCCCH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL------LYAKRGQSYLQ---LSKPNACIRDCSVALKINPDSA  181 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~------~~~~la~~~~~---~~~~~~Ai~~~~~al~~~p~~~  181 (231)
                      .....+..+|..+...|++++|+..|++++..+|++..      +++.+|.++..   .|++++|+..|++++.++|++.
T Consensus       370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  449 (514)
T 2gw1_A          370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE  449 (514)
T ss_dssp             TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH
Confidence            34567788899999999999999999999999888754      89999999999   9999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .+++.+|.++...|++++|...|++++.++|++.
T Consensus       450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  483 (514)
T 2gw1_A          450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTME  483 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence            9999999999999999999999999999999865

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.28  E-value=3.3e-11  Score=85.52  Aligned_cols=86  Identities=14%  Similarity=0.096  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      .....+..+|..+...|++++|+..|++++..+|++..+++++|.++..+|++++|+..|++++.++|.+..++..++.+
T Consensus        48 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  127 (133)
T 2lni_A           48 KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC  127 (133)
T ss_dssp             TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCC
Q psy13481        191 YRLLGK  196 (231)
Q Consensus       191 ~~~~g~  196 (231)
                      +..+|+
T Consensus       128 ~~~~~~  133 (133)
T 2lni_A          128 MMAQYN  133 (133)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            988774

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.28  E-value=1.7e-10  Score=92.76  Aligned_cols=94  Identities=18%  Similarity=0.227  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        114 NEKKREAIHAYN----DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       114 ~~~~~~a~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      .+++.+|..+..    .+++++|+..|+++++.+  ++.+++++|.+|..    .+++.+|+.+|++++..+  ++.+++
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~  114 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCA  114 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHH
Confidence            344445555555    555555555555555443  44555555555555    555555555555555542  455555


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHhcC
Q psy13481        186 FRGRAYRL----LGKWEEAAVDLRNACKID  211 (231)
Q Consensus       186 ~lg~~~~~----~g~~~~A~~~~~~al~l~  211 (231)
                      ++|.+|..    .|++++|+..|+++++++
T Consensus       115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A          115 SLGGIYHDGKVVTRDFKKAVEYFTKACDLN  144 (273)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence            55555555    555555555555555544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.27  E-value=4.3e-11  Score=79.65  Aligned_cols=80  Identities=25%  Similarity=0.356  Sum_probs=72.0

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        145 SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       145 ~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      .++.+++.+|.++...|++.+|+..|++++.++|.+..+++.+|.++...|++++|+..|++++.++|++. +...+..+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999754 45444444


Q ss_pred             c
Q psy13481        224 T  224 (231)
Q Consensus       224 ~  224 (231)
                      .
T Consensus        87 ~   87 (91)
T 1na3_A           87 K   87 (91)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.27  E-value=1.6e-10  Score=94.27  Aligned_cols=103  Identities=12%  Similarity=0.042  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCCH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVAL---KINPDSA  181 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al---~~~p~~~  181 (231)
                      ..+..++..|..+...|++++|+..|++++...+..      ..+++++|.+|..+|+|++|+..|++++   ...|.+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~  192 (293)
T 2qfc_A          113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence            344556778888899999999999999999875544      6789999999999999999999999999   5556643


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        182 ----AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       182 ----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                          .+++++|.+|..+|+|++|+..|++++.+.++
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence                68999999999999999999999999988643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.27  E-value=1.8e-11  Score=91.35  Aligned_cols=85  Identities=11%  Similarity=0.091  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      .++.....++.+|.+++..|+|++|+..|++++.++|++..+|+++|.++..+|++++|+.+|++++.++|++..+|+.+
T Consensus        40 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  119 (164)
T 3sz7_A           40 IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR  119 (164)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            34556788999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHHHH
Q psy13481        188 GRAYR  192 (231)
Q Consensus       188 g~~~~  192 (231)
                      +.+..
T Consensus       120 ~l~~~  124 (164)
T 3sz7_A          120 GLETT  124 (164)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.27  E-value=3.3e-11  Score=99.19  Aligned_cols=103  Identities=10%  Similarity=-0.145  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL-LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      ....|..+|..+...|++++|+..|++++++.|.+.. +|.++|.++.+.|++++|+..|++++..+|.+..+|...+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM  177 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3566777777777777777777777777777777765 777777777777777777777777766666666555544444


Q ss_pred             HHH-cCCHHHHHHHHHHHHhcCCCH
Q psy13481        191 YRL-LGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       191 ~~~-~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ... .|++++|...|+++++++|++
T Consensus       178 ~~~~~~~~~~A~~~~~~al~~~p~~  202 (308)
T 2ond_A          178 EYYCSKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            332 566666666666666666653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.27  E-value=1.9e-11  Score=99.14  Aligned_cols=104  Identities=23%  Similarity=0.269  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI-----  176 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~-----  176 (231)
                      +..+..+..+|..+...|++++|+.+|++++..        .|....++..+|.++..+|++++|+..+++++.+     
T Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  229 (311)
T 3nf1_A          150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE  229 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            666788999999999999999999999999998        7777889999999999999999999999999985     


Q ss_pred             --------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        177 --------------------------------------------NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       177 --------------------------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                                                                  .|..+.++..+|.+|..+|++++|+..|++++++.|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             HC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                                                        356678999999999999999999999999999887


Q ss_pred             C
Q psy13481        213 D  213 (231)
Q Consensus       213 ~  213 (231)
                      +
T Consensus       310 ~  310 (311)
T 3nf1_A          310 Q  310 (311)
T ss_dssp             -
T ss_pred             c
Confidence            5

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.26  E-value=2.3e-11  Score=83.65  Aligned_cols=86  Identities=13%  Similarity=0.164  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAAAYKF  186 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~  186 (231)
                      +++.+..++.+|..++..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|++++.+.|.  +......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            34557889999999999999999999999999999999999999999999999999999999999998764  4444455


Q ss_pred             HHHHHHHc
Q psy13481        187 RGRAYRLL  194 (231)
Q Consensus       187 lg~~~~~~  194 (231)
                      +..++...
T Consensus        83 l~~~l~~~   90 (100)
T 3ma5_A           83 LQDAKLKA   90 (100)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            55544443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.26  E-value=4.6e-11  Score=106.90  Aligned_cols=124  Identities=10%  Similarity=0.042  Sum_probs=111.8

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHH
Q psy13481        104 EVSEEDIDKSNEKKREAIHAYNDGK----------FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS--KPNACIRDCS  171 (231)
Q Consensus       104 ~~~~~~~~~a~~~~~~a~~~~~~~~----------~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~Ai~~~~  171 (231)
                      .+...+++...+|..++.++...|+          +++|+..+++++..+|++..+|+.|+-++.+++  ++.+++.+++
T Consensus        54 ~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~  133 (567)
T 1dce_A           54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA  133 (567)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            3344567778999999999999888          999999999999999999999999999999999  6699999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCH-HHHHHHHhhchhh
Q psy13481        172 VALKINPDSAAAYKFRGRAYRLLG-KWEEAAVDLRNACKIDFDE-QADEWLKEVTPNK  227 (231)
Q Consensus       172 ~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~~  227 (231)
                      ++++++|+|..+|+.+|.++..+| .++++++++.++++.+|++ +++.....+..++
T Consensus       134 k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          134 RFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            999999999999999999999999 9999999999999999974 4777766665554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.26  E-value=7e-11  Score=97.77  Aligned_cols=121  Identities=10%  Similarity=-0.060  Sum_probs=105.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CChHHHHHHHHHHHhh
Q psy13481        106 SEEDIDKSNEKKREAIHAYNDG--KFEDAVNAYSEAIKLNPSSALLYAKRGQSY----LQL---SKPNACIRDCSVALKI  176 (231)
Q Consensus       106 ~~~~~~~a~~~~~~a~~~~~~~--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~----~~~---~~~~~Ai~~~~~al~~  176 (231)
                      ..-+++...+|..++.++...+  ++++++..++.++..+|.+..+|+.|+.++    ..+   +++.+++..+++++++
T Consensus        60 L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~  139 (306)
T 3dra_A           60 INELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS  139 (306)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH
T ss_pred             HHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh
Confidence            3445667889999999999999  999999999999999999999999999999    777   7899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCH-HHHHHHHhhchh
Q psy13481        177 NPDSAAAYKFRGRAYRLLGKWE--EAAVDLRNACKIDFDE-QADEWLKEVTPN  226 (231)
Q Consensus       177 ~p~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~l~p~~-~~~~~l~~~~~~  226 (231)
                      +|.|..+|+.++.++..+|.++  +++.++.+++.++|.+ .++.....+...
T Consensus       140 ~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~  192 (306)
T 3dra_A          140 DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS  192 (306)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999998  9999999999999974 365555444443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.25  E-value=6.4e-11  Score=100.55  Aligned_cols=96  Identities=15%  Similarity=0.132  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      ..+..+..+..+|.+++..|+|++|+.+|+++++++|+++.+|+++|.+|..+|+|++|+.+|+++++++|.+..++..+
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q psy13481        188 GRAYRLLGKWEEAAVD  203 (231)
Q Consensus       188 g~~~~~~g~~~~A~~~  203 (231)
                      +.++..+++++++.+.
T Consensus       348 ~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998887654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.25  E-value=6.7e-11  Score=97.89  Aligned_cols=121  Identities=6%  Similarity=-0.065  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhhCC
Q psy13481        108 EDIDKSNEKKREAIHA----YND---GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPN--ACIRDCSVALKINP  178 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~----~~~---~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~Ai~~~~~al~~~p  178 (231)
                      .++....+|..++.++    ...   +++.+++.++++++..+|.+..+|+.|+.++..+|+++  +++..++++++++|
T Consensus        98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~  177 (306)
T 3dra_A           98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL  177 (306)
T ss_dssp             HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred             HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence            4455567888888888    666   89999999999999999999999999999999999999  99999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCH-HHHHHHHhhchhhh
Q psy13481        179 DSAAAYKFRGRAYRLLGK------WEEAAVDLRNACKIDFDE-QADEWLKEVTPNKL  228 (231)
Q Consensus       179 ~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~~~  228 (231)
                      .|..+|+.++.+...+|.      +++++.++.+++.++|++ +++..+..+..++.
T Consensus       178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~  234 (306)
T 3dra_A          178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD  234 (306)
T ss_dssp             TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence            999999999999999998      999999999999999975 47777777766554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.25  E-value=1.1e-11  Score=92.26  Aligned_cols=81  Identities=15%  Similarity=0.175  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------ChHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKF----------EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-----------KPNA  165 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~----------~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~  165 (231)
                      ..++.++..|+.+|.++...+++          ++|+..|+++|+++|++..+|+++|.+|..+|           +|++
T Consensus        30 ~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~e  109 (158)
T 1zu2_A           30 KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDL  109 (158)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHH
Confidence            44566789999999999998875          59999999999999999999999999999885           8999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHH
Q psy13481        166 CIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       166 Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      |+.+|++|++++|++...+..+
T Consensus       110 A~~~~~kAl~l~P~~~~y~~al  131 (158)
T 1zu2_A          110 ATQFFQQAVDEQPDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999987554443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.24  E-value=4.2e-11  Score=98.65  Aligned_cols=101  Identities=11%  Similarity=-0.018  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS----  180 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~----  180 (231)
                      ..+..+..+|.++.. |++++|+.+|++++.+.+..      ..++.++|.+|..+|+|++|+..|++++.+.|.+    
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  192 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP  192 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence            346788899999988 99999999999999987654      6789999999999999999999999999987644    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        181 --AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       181 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                        ..++..+|.++..+|++++|+..|++++ ++|+
T Consensus       193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~  226 (307)
T 2ifu_A          193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG  226 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence              3478899999999999999999999999 9986

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.23  E-value=3.3e-11  Score=98.43  Aligned_cols=100  Identities=13%  Similarity=0.107  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL-------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS----  180 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~----  180 (231)
                      .+..+..+|.++...|+|++|+.+|++++..       .+....+++++|.+|..+|+|++|+..+++++.+.+..    
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence            3567899999999999999999999999953       22235689999999999999999999999999987544    


Q ss_pred             --HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC
Q psy13481        181 --AAAYKFRGRAYRLLG-KWEEAAVDLRNACKID  211 (231)
Q Consensus       181 --~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~  211 (231)
                        +.+++++|.++..+| ++++|+..|++|+.+.
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence              789999999999999 5799999999999874

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.23  E-value=5.5e-11  Score=86.67  Aligned_cols=102  Identities=20%  Similarity=0.203  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---  180 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---  180 (231)
                      ...+..+..+|..++..|++++|+.+|++++.+.+..      ..++.++|.++...|++++|+..+++++.+.+..   
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            4457788999999999999999999999999886543      2588999999999999999999999999887543   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        181 ---AAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       181 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                         ..+++++|.++..+|++++|+..+++++.+.
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence               5688999999999999999999999999874

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.23  E-value=1.2e-10  Score=83.55  Aligned_cols=86  Identities=22%  Similarity=0.187  Sum_probs=75.2

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHH
Q psy13481        141 KLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEW  219 (231)
Q Consensus       141 ~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~  219 (231)
                      ..+|.++..|+.+|.+++..|+|.+|+..|++++.++|.++.+|+++|.++..+|++++|+..|++++.++|++. +...
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            457788999999999999999999999999999999999999999999999999999999999999999999854 5555


Q ss_pred             HHhhchh
Q psy13481        220 LKEVTPN  226 (231)
Q Consensus       220 l~~~~~~  226 (231)
                      +..+...
T Consensus        83 l~~~~~~   89 (137)
T 3q49_B           83 LGQCQLE   89 (137)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.23  E-value=3.6e-11  Score=107.56  Aligned_cols=121  Identities=9%  Similarity=-0.003  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDG--KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-KPNACIRDCSVALKINPDSAAA  183 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~  183 (231)
                      ..++....+|..++.++...+  +|++|++.++++++.+|.+..+|+.|+.++..+| .+++++.++.++|+.+|.|..+
T Consensus       101 ~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~sa  180 (567)
T 1dce_A          101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  180 (567)
T ss_dssp             HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccH
Confidence            455666889999999999999  7899999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481        184 YKFRGRAYRLL--------------GKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       184 ~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~  227 (231)
                      |+.+|.++..+              +.++++++++.+|+.++|++. ++..++-+....
T Consensus       181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~  239 (567)
T 1dce_A          181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA  239 (567)
T ss_dssp             HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence            99999999986              668999999999999999854 777777666543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.23  E-value=4.4e-11  Score=96.89  Aligned_cols=106  Identities=23%  Similarity=0.196  Sum_probs=96.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-
Q psy13481        106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI-  176 (231)
Q Consensus       106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~-  176 (231)
                      ...++..+..+..+|..++..|++++|+.+|++++.+        .|....++..+|.++...|++++|+..+++++.+ 
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3455677899999999999999999999999999995        6777899999999999999999999999999988 


Q ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        177 -------NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       177 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                             .|....++..+|.++..+|++++|+..|++++.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  141 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR  141 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence                   35567899999999999999999999999999884

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.22  E-value=5.1e-11  Score=81.83  Aligned_cols=86  Identities=14%  Similarity=0.123  Sum_probs=76.3

Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--HH-HHH
Q psy13481        142 LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD--EQ-ADE  218 (231)
Q Consensus       142 ~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~-~~~  218 (231)
                      ++|++..+|+.+|.++...|++.+|+..|++++.++|.+..+++.+|.++..+|++++|+..|+++++++|+  +. +..
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368889999999999999999999999999999999999999999999999999999999999999999998  53 455


Q ss_pred             HHHhhchhh
Q psy13481        219 WLKEVTPNK  227 (231)
Q Consensus       219 ~l~~~~~~~  227 (231)
                      .+..+...+
T Consensus        81 ~l~~~~~~~   89 (112)
T 2kck_A           81 AKADALRYI   89 (112)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHHH
Confidence            555444433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.22  E-value=7.4e-11  Score=96.37  Aligned_cols=100  Identities=12%  Similarity=0.091  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAI---KLNPSSA----LLYAKRGQSYLQLSKPNACIRDCSVALKINPD-----  179 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al---~~~p~~~----~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~-----  179 (231)
                      .+..+..+|..+...|+|++|+.+|++++   ...|++.    .+++++|.+|..+|+|++|+..+++++.+.+.     
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~  233 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence            36788999999999999999999999999   5566642    68999999999999999999999999988643     


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q psy13481        180 -SAAAYKFRGRAYRLLGKWEEA-AVDLRNACKID  211 (231)
Q Consensus       180 -~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~l~  211 (231)
                       .+.+++++|.+|..+|++++| ..+|++|+.+.
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence             277999999999999999999 78899998764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.22  E-value=1.8e-10  Score=80.38  Aligned_cols=84  Identities=23%  Similarity=0.401  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ....+..+|..+...|++++|+..|++++..+|.+..+++.+|.++...|++++|+..+++++.++|.+..++..+|.++
T Consensus        42 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           42 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHcC
Q psy13481        192 RLLG  195 (231)
Q Consensus       192 ~~~g  195 (231)
                      ...|
T Consensus       122 ~~~g  125 (125)
T 1na0_A          122 QKQG  125 (125)
T ss_dssp             HHHC
T ss_pred             Hhcc
Confidence            8765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.22  E-value=1.1e-10  Score=98.84  Aligned_cols=103  Identities=18%  Similarity=0.276  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhh------CC
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA----LLYAKRGQSYLQLSKPNACIRDCSVALKI------NP  178 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~Ai~~~~~al~~------~p  178 (231)
                      .+..+..+...|..++..|++++|+..|++++...|++.    .+|+.+|.++...|++++|+..|++++.+      .+
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            356688889999999999999999999999999999986    58999999999999999999999999998      56


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       179 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      ....+++.+|.+|..+|++++|+..|++++.+.
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  156 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA  156 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999999984

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.21  E-value=1.3e-10  Score=82.74  Aligned_cols=79  Identities=18%  Similarity=0.100  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481        148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN  226 (231)
Q Consensus       148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~  226 (231)
                      ..++.+|.+++..|++.+|+..|++++.++|+++.+|+.+|.++..+|++++|+..|+++++++|++. +...+..+...
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999854 44445444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.21  E-value=2e-11  Score=91.06  Aligned_cols=81  Identities=11%  Similarity=0.073  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL-------NPSSALLY----AKRGQSYLQLSKPNACIRDCSVALKINP  178 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-------~p~~~~~~----~~la~~~~~~~~~~~Ai~~~~~al~~~p  178 (231)
                      +..+..|..+|.++...|+|++|+..|+++|++       +|+++.+|    +++|.++..+|+|++|+.+|+++++++|
T Consensus        54 ~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            345679999999999999999999999999999       99999999    9999999999999999999999999999


Q ss_pred             CCHHHHHHHHHH
Q psy13481        179 DSAAAYKFRGRA  190 (231)
Q Consensus       179 ~~~~~~~~lg~~  190 (231)
                      .+..++..+..+
T Consensus       134 ~d~~~~~~~~~~  145 (159)
T 2hr2_A          134 ERKGETPGKERM  145 (159)
T ss_dssp             HCCSCCTTHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            887665554444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.21  E-value=1.1e-10  Score=98.71  Aligned_cols=104  Identities=16%  Similarity=0.093  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----hC
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALK-----IN  177 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~-----~~  177 (231)
                      .+..+..+..+|..+...|+|++|+.+|++++.+.+..      +.+++++|.+|..+|++++|+.++++++.     .+
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            45567888999999999999999999999999885533      36899999999999999999999999999     46


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        178 -PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       178 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                       |..+.+++++|.++..+|++++|...|++++.+.+
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             77889999999999999999999999999999853

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.20  E-value=1.3e-10  Score=98.11  Aligned_cols=102  Identities=12%  Similarity=0.055  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA  181 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~  181 (231)
                      ....+..+..+|..+...|++++|+.+|++++.+.+.       .+.++.++|.+|..+|+|++|+..|++++.+.+...
T Consensus       139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  218 (383)
T 3ulq_A          139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK  218 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence            4557889999999999999999999999999998443       356899999999999999999999999998865432


Q ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        182 ------AAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       182 ------~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                            .+++++|.+|..+|++++|+..|++++.+
T Consensus       219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                  58999999999999999999999999994

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.20  E-value=8.5e-11  Score=101.40  Aligned_cols=107  Identities=13%  Similarity=0.108  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------------------CChHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL-------------------SKPNACIRD  169 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-------------------~~~~~Ai~~  169 (231)
                      ++.....+..+|..+...|++++|+..|+++++.+|+++.+++++|.+|...                   +.+..|+..
T Consensus       243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  322 (472)
T 4g1t_A          243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH  322 (472)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence            3445677889999999999999999999999999999999999999988653                   346789999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        170 CSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       170 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +++++.++|.+..+++.+|.++..+|++++|+..|++++.++|++.
T Consensus       323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~  368 (472)
T 4g1t_A          323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV  368 (472)
T ss_dssp             HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence            9999999999999999999999999999999999999999998754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.19  E-value=2e-10  Score=83.58  Aligned_cols=101  Identities=21%  Similarity=0.151  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPD------  179 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~------  179 (231)
                      .+..+..+|..+...|++++|+.+|++++.+.+..      ..++.++|.++...|++++|+..+++++.+.+.      
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  127 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  127 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence            35688899999999999999999999999986543      678999999999999999999999999987532      


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       180 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      ...++..+|.++..+|++++|...+++++.+..
T Consensus       128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            256889999999999999999999999998754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.19  E-value=1.3e-10  Score=94.60  Aligned_cols=102  Identities=19%  Similarity=0.283  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKI------NPDSA  181 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~------~p~~~  181 (231)
                      ....++..|..++..|++++|+..|++++...|++    ..++..+|.++...|++++|+..+++++.+      .+...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            45678899999999999999999999999999998    578899999999999999999999999988      44557


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      .++..+|.++..+|++++|+..|++++.+.+.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  115 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  115 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999988653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.18  E-value=3.4e-10  Score=94.47  Aligned_cols=118  Identities=9%  Similarity=-0.002  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDG--KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK-PNACIRDCSVALKINPDSAAA  183 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~  183 (231)
                      ..++....+|..++.++...+  .+++++.++.+++..+|.+..+|+.++.++...|. +.+++.++.++|+.+|.|..+
T Consensus       102 ~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SA  181 (331)
T 3dss_A          102 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS  181 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHH
Confidence            345666889999999999988  49999999999999999999999999999999999 599999999999999999999


Q ss_pred             HHHHHHHHHHc--------------CCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        184 YKFRGRAYRLL--------------GKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       184 ~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      |+.++.++..+              +.+++++.++.+++.++|++. ++..++-+.
T Consensus       182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll  237 (331)
T 3dss_A          182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL  237 (331)
T ss_dssp             HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999988              569999999999999999865 665555443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.17  E-value=1.3e-10  Score=97.56  Aligned_cols=101  Identities=19%  Similarity=0.286  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKI------NPDSAA  182 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~------~p~~~~  182 (231)
                      +..+...|..++..|++++|+..|++++...|++    ..++..+|.+++..|+|.+|+..+++++.+      .|....
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            5678899999999999999999999999999998    468999999999999999999999999988      345577


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ++..+|.++..+|++++|+..|++++.+.|.
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.17  E-value=3e-10  Score=78.46  Aligned_cols=81  Identities=11%  Similarity=0.104  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      .....+..+|..+...|++++|+..|++++..+|++..+++++|.++..+|++++|+..+++++.++|.+..++..++.+
T Consensus        36 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           36 HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             H
Q psy13481        191 Y  191 (231)
Q Consensus       191 ~  191 (231)
                      .
T Consensus       116 ~  116 (118)
T 1elw_A          116 E  116 (118)
T ss_dssp             H
T ss_pred             h
Confidence            5

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.17  E-value=3.1e-10  Score=77.30  Aligned_cols=72  Identities=17%  Similarity=0.088  Sum_probs=67.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        143 NPSSALLYAKRGQSYLQLSK---PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       143 ~p~~~~~~~~la~~~~~~~~---~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      +|+++..+..+|.+++..++   ..+|...+++++.++|+++.+++.+|..++..|+|++|+..|++++..+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            68899999999999987776   7999999999999999999999999999999999999999999999999984

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.17  E-value=1.5e-10  Score=88.30  Aligned_cols=99  Identities=10%  Similarity=-0.001  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCCC--
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI---NPDS--  180 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~---~p~~--  180 (231)
                      .+..+..+|..+...|++++|+.+|++++.+      .+....++.++|.++...|++++|+..+++++.+   .+++  
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            3566777777888888888888888887773      3344667777888888888888888888887777   3322  


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        181 --AAAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       181 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                        ..+++++|.++..+|++++|+..+++++.+
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVY  136 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence              346777788888888888888888777765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.16  E-value=1.2e-10  Score=95.22  Aligned_cols=103  Identities=14%  Similarity=0.041  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHH----------------------------------HHHHHHHHhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAV----------------------------------NAYSEAIKLNPSSALLYAK  152 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai----------------------------------~~~~~al~~~p~~~~~~~~  152 (231)
                      ..+++....+..+|..+...|++++|+                                  ..|++++..+|++..++++
T Consensus       145 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~  224 (287)
T 3qou_A          145 QLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQ  224 (287)
T ss_dssp             HHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHH
Confidence            445555666677777777777666654                                  5566668889999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481        153 RGQSYLQLSKPNACIRDCSVALKINPDS--AAAYKFRGRAYRLLGKWEEAAVDLRNACK  209 (231)
Q Consensus       153 la~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~  209 (231)
                      +|.++...|++++|+..|.+++..+|++  ..++.++|.++..+|+.++|...|++++.
T Consensus       225 la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          225 LALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999999999999999999998  89999999999999999999999999875

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.16  E-value=5.7e-11  Score=97.89  Aligned_cols=102  Identities=13%  Similarity=0.095  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS----  180 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~----  180 (231)
                      ..+..+...|.++...|++++|+.+|++++.+.+.      ...++.++|.+|.. |+|++|+.+|++++.+.+..    
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence            44678889999999999999999999999998543      25789999999999 99999999999999998754    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        181 --AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       181 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                        ..++.++|.+|..+|+|++|+..|++++.+.|+
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence              578999999999999999999999999998654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.16  E-value=2.5e-10  Score=77.52  Aligned_cols=66  Identities=23%  Similarity=0.383  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAA-AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       150 ~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .+++|.+++..|+|.+|+..|++++..+|.++. +++++|.++..+|++++|+..|+++++++|++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            357899999999999999999999999999999 999999999999999999999999999999854

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.16  E-value=2.7e-10  Score=92.79  Aligned_cols=111  Identities=14%  Similarity=-0.016  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CC-CHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRDCSVALKIN--PD-SAAA  183 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--p~-~~~~  183 (231)
                      .+... ..+.+|..++..++|++|+..|++++...+..  ..+++++|.++..+|++.+|+.+|++++...  |. .+.+
T Consensus       132 ~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da  210 (282)
T 4f3v_A          132 GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAI  210 (282)
T ss_dssp             TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHH
T ss_pred             CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHH
Confidence            34556 88999999999999999999999887653221  4589999999999999999999999999655  55 6679


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHH
Q psy13481        184 YKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWL  220 (231)
Q Consensus       184 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l  220 (231)
                      ++.+|.|+..+|+.++|...|++++..+|+..+...+
T Consensus       211 ~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL  247 (282)
T 4f3v_A          211 AWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            9999999999999999999999999999993344433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.16  E-value=2.8e-10  Score=96.11  Aligned_cols=103  Identities=12%  Similarity=-0.038  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----hCC
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP------SSALLYAKRGQSYLQLSKPNACIRDCSVALK-----INP  178 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~-----~~p  178 (231)
                      ...+..+..+|..+...|+|++|+.+|++++.+.+      ..+.++.++|.+|..+|++++|+..+++++.     .+|
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~  258 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD  258 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence            35678889999999999999999999999999743      1256899999999999999999999999999     778


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        179 DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       179 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      ..+.+++++|.++..+|++++|+..+++++.+.+
T Consensus       259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999854

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.15  E-value=2.2e-09  Score=86.18  Aligned_cols=95  Identities=20%  Similarity=0.204  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        113 SNEKKREAIHAYN----DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       113 a~~~~~~a~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      ...++.+|..+..    .+++++|+..|++++..+  ++.+++++|.+|..    .+++++|+.+|+++++.+  +..++
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~  149 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGC  149 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHH
Confidence            4555566666666    666666666666666553  56666666666666    666666666666666654  55566


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q psy13481        185 KFRGRAYRL----LGKWEEAAVDLRNACKID  211 (231)
Q Consensus       185 ~~lg~~~~~----~g~~~~A~~~~~~al~l~  211 (231)
                      +++|.+|..    .+++++|+..|+++++.+
T Consensus       150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  180 (273)
T 1ouv_A          150 TILGSLYDAGRGTPKDLKKALASYDKACDLK  180 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            666666666    666666666666666654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.15  E-value=4e-11  Score=97.82  Aligned_cols=105  Identities=13%  Similarity=0.072  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-----HH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-----AA  183 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-----~~  183 (231)
                      ++.....+..+|..+...|++++|+..|+++++++|++..+++++|.++..+|++++|+..|++++.++|++.     .+
T Consensus        34 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~  113 (281)
T 2c2l_A           34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI  113 (281)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHH
Confidence            3445788999999999999999999999999999999999999999999999999999999999999998652     11


Q ss_pred             H--------------------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        184 Y--------------------------KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       184 ~--------------------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +                          ..++.  ...|++++|++.|+++++++|++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~al~~~p~~~  169 (281)
T 2c2l_A          114 PSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRNHEGHEDDG  169 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGGGTTTSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhccccchh
Confidence            1                          11222  246899999999999999999853

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.15  E-value=5.8e-10  Score=93.05  Aligned_cols=119  Identities=10%  Similarity=0.036  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhh
Q psy13481        109 DIDKSNEKKREAIHAYNDGK----------FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK--PNACIRDCSVALKI  176 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~----------~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~Ai~~~~~al~~  176 (231)
                      +|+...+|..++.++...+.          +.+++.+++.++..+|.+..+|+.|+.++..+++  +.+++.++.+++++
T Consensus        60 nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~  139 (331)
T 3dss_A           60 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA  139 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh
Confidence            34446788888888876665          7899999999999999999999999999999995  89999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCH-HHHHHHHhhchhh
Q psy13481        177 NPDSAAAYKFRGRAYRLLGK-WEEAAVDLRNACKIDFDE-QADEWLKEVTPNK  227 (231)
Q Consensus       177 ~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~~  227 (231)
                      +|.|..+|+.++.+....|. +++++.++.+++..+|.+ +++.....+...+
T Consensus       140 dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          140 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999 699999999999999974 4776666665554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.14  E-value=1.1e-09  Score=77.47  Aligned_cols=84  Identities=18%  Similarity=0.063  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ...++.+|..++..|+|++|+..|++++..+|++   +.+++.+|.++..+|++++|+..|++++..+|++..+...+..
T Consensus        39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            3688899999999999999999999999999999   8999999999999999999999999999999999988777766


Q ss_pred             HHHHcCC
Q psy13481        190 AYRLLGK  196 (231)
Q Consensus       190 ~~~~~g~  196 (231)
                      +....++
T Consensus       119 l~~l~~~  125 (129)
T 2xev_A          119 LQSIRLG  125 (129)
T ss_dssp             HHHHC--
T ss_pred             HHHHHhh
Confidence            6655544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.13  E-value=3.5e-10  Score=94.90  Aligned_cols=116  Identities=12%  Similarity=0.035  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDG-KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL-S-KPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      +++...+|..++.++...| ++++++..++.++..+|++..+|+.|+.++..+ + ++.+++..+.++++++|.|..+|+
T Consensus        84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~  163 (349)
T 3q7a_A           84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA  163 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence            3444555666666666666 366666666666666666666666666666665 5 566666666666666666666666


Q ss_pred             HHHHHHHHcCCHH--------HHHHHHHHHHhcCCCH-HHHHHHHhhc
Q psy13481        186 FRGRAYRLLGKWE--------EAAVDLRNACKIDFDE-QADEWLKEVT  224 (231)
Q Consensus       186 ~lg~~~~~~g~~~--------~A~~~~~~al~l~p~~-~~~~~l~~~~  224 (231)
                      .++.+...+|.++        +++.++.+++..+|.| .++.....+.
T Consensus       164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL  211 (349)
T 3q7a_A          164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR  211 (349)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            6666666666555        6666666666666643 2444444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=7.9e-10  Score=79.83  Aligned_cols=82  Identities=12%  Similarity=0.126  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ....+..+|..+...|++++|+..|++++..+|++..+|+++|.++..+|++++|+..|++++.++|.+..++..++.+.
T Consensus        64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999998888775


Q ss_pred             HH
Q psy13481        192 RL  193 (231)
Q Consensus       192 ~~  193 (231)
                      ..
T Consensus       144 ~~  145 (148)
T 2dba_A          144 GP  145 (148)
T ss_dssp             CS
T ss_pred             hh
Confidence            43

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.13  E-value=2.3e-10  Score=80.10  Aligned_cols=85  Identities=12%  Similarity=0.093  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--SAAAYKFRG  188 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~~~~~~~lg  188 (231)
                      .....++.+|..++..|++++|+..|++++.++|++..+|+++|.++..+|++++|+..|++++.++|.  +..+...+.
T Consensus        17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~   96 (115)
T 2kat_A           17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQ   96 (115)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            346789999999999999999999999999999999999999999999999999999999999999874  445555555


Q ss_pred             HHHHHcC
Q psy13481        189 RAYRLLG  195 (231)
Q Consensus       189 ~~~~~~g  195 (231)
                      ..+..+|
T Consensus        97 ~~l~~l~  103 (115)
T 2kat_A           97 VFLRRLA  103 (115)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            5554443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.12  E-value=2.2e-10  Score=87.40  Aligned_cols=104  Identities=14%  Similarity=0.099  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--C
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL---NPS----SALLYAKRGQSYLQLSKPNACIRDCSVALKINP--D  179 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~---~p~----~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p--~  179 (231)
                      .+..+..+..+|..+...|++++|+..|++++.+   .++    ...++.++|.++..+|++++|+..+++++.+.+  .
T Consensus        62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  141 (203)
T 3gw4_A           62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD  141 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence            4556788999999999999999999999999998   442    356799999999999999999999999997743  2


Q ss_pred             C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        180 S----AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       180 ~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      +    ..++.++|.++..+|++++|...|++++.+..
T Consensus       142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            2    23568999999999999999999999998754

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.12  E-value=6.3e-10  Score=82.05  Aligned_cols=100  Identities=9%  Similarity=-0.028  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481        129 FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS---KPNACIRDCSVALKIN-P-DSAAAYKFRGRAYRLLGKWEEAAVD  203 (231)
Q Consensus       129 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~Ai~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~  203 (231)
                      ...+...|.+.+..++.+..+.+++|.++.+.+   +..+++..++.++..+ | ++..++|++|..|+.+|+|++|..+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            456677788888888999999999999999999   6679999999999998 7 6688999999999999999999999


Q ss_pred             HHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481        204 LRNACKIDFDEQ-ADEWLKEVTPNKL  228 (231)
Q Consensus       204 ~~~al~l~p~~~-~~~~l~~~~~~~~  228 (231)
                      +.++++++|++. +....+.+..++.
T Consensus        94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~  119 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKELERLIDKAMK  119 (152)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            999999999875 6666666665554

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.09  E-value=6.4e-09  Score=87.25  Aligned_cols=109  Identities=13%  Similarity=-0.004  Sum_probs=94.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C-
Q psy13481        119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-KPNACIRDCSVALKINPDSAAAYKFRGRAYRLL-G-  195 (231)
Q Consensus       119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~-g-  195 (231)
                      ........+..++|+..++++|.++|++..+|+.|+.++..+| .+.+++..+++++..+|.+..+|+.++.++..+ + 
T Consensus        60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~  139 (349)
T 3q7a_A           60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ  139 (349)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence            3334445566679999999999999999999999999999999 599999999999999999999999999999998 8 


Q ss_pred             CHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481        196 KWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       196 ~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~  227 (231)
                      ++++++.++.+++.++|.+. ++....-+..++
T Consensus       140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l  172 (349)
T 3q7a_A          140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHF  172 (349)
T ss_dssp             CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999854 555544444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.09  E-value=5.6e-10  Score=91.09  Aligned_cols=100  Identities=12%  Similarity=0.025  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CC
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN-------PD  179 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-------p~  179 (231)
                      +..+...|..+...+++++|+.+|++++...+..      ..+++++|.+|..+|+|++|+..|++++.+.       +.
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            3445568888899999999999999999974432      4479999999999999999999999999532       22


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       180 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      ...+++++|.+|..+|+|++|+..+++++.+.+
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~  227 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            345899999999999999999999999998864

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.08  E-value=3.8e-10  Score=94.77  Aligned_cols=97  Identities=22%  Similarity=0.165  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------H
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS------A  181 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------~  181 (231)
                      ..+..+|..+...|++++|+.+|++++.+.+..      ..++.++|.++...|++++|+..+++++.+.+..      .
T Consensus       228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  307 (406)
T 3sf4_A          228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG  307 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            355555666666666666666666666554443      4555566666666666666666666666554332      4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                      .++..+|.+|..+|++++|+..|++++.+
T Consensus       308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  336 (406)
T 3sf4_A          308 RACWSLGNAYTALGNHDQAMHFAEKHLEI  336 (406)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45556666666666666666666666655

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.08  E-value=4.3e-09  Score=88.48  Aligned_cols=110  Identities=16%  Similarity=0.184  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------
Q psy13481        113 SNEKKREAIHAYNDGK---FEDAVNAYSEAIKLNPSSALLYAKRGQS---------------------------------  156 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~---~~~Ai~~~~~al~~~p~~~~~~~~la~~---------------------------------  156 (231)
                      +..++.+|..++..++   +.+|+.+|++|++++|+++.+|..++.+                                 
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~  275 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN  275 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence            5667788888876654   5789999999999999998877754443                                 


Q ss_pred             -----------HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481        157 -----------YLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV  223 (231)
Q Consensus       157 -----------~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~  223 (231)
                                 +...|++++|+..+++|+.++| +..+|..+|.++...|++++|+..|.+|+.++|......|...+
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l  352 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENG  352 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCc
Confidence                       3447899999999999999997 57788999999999999999999999999999998877776654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.07  E-value=1.5e-09  Score=91.56  Aligned_cols=101  Identities=16%  Similarity=0.130  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPD--  179 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~--  179 (231)
                      .+..+..++.+|..+...|++..|+.++++++.+.+.       .+.+++++|.++..+|+|++|+..|++++.+.+.  
T Consensus       137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~  216 (378)
T 3q15_A          137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ  216 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence            4566788888999999999999999999999887442       2567888999999999999999999999887431  


Q ss_pred             ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy13481        180 ----SAAAYKFRGRAYRLLGKWEEAAVDLRNACK  209 (231)
Q Consensus       180 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  209 (231)
                          ...+++++|.+|..+|++++|+..|++++.
T Consensus       217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                245788899999999999999999999998

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.07  E-value=2.4e-10  Score=96.76  Aligned_cols=104  Identities=15%  Similarity=0.138  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA------LLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---  180 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---  180 (231)
                      ...+..+..+|..++..|++++|+.+|++++.+.+...      .++.++|.++..+|++++|+..|++++.+.+..   
T Consensus       220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            34456788889999999999999999999998876543      388899999999999999999999999888754   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        181 ---AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       181 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                         ..++..+|.++..+|++++|+..|++++.+.+.
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence               678889999999999999999999999887653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.07  E-value=2e-09  Score=83.95  Aligned_cols=97  Identities=12%  Similarity=-0.027  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS----KPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      ++.+++.+|..+...+++++|+..|+++++.  .++.+++++|.+|.. +    ++.+|+.+|+++++  +.++.+++++
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~L   91 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVL   91 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHH
Confidence            3566777777777777777777777777664  467777777777776 5    67777777777754  4567777777


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhcCCC
Q psy13481        188 GRAYRL----LGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       188 g~~~~~----~g~~~~A~~~~~~al~l~p~  213 (231)
                      |.+|..    .+++++|+.+|++++...+.
T Consensus        92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  121 (212)
T 3rjv_A           92 ARVLVNRQAGATDVAHAITLLQDAARDSES  121 (212)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence            777766    67777777777777777763

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=1.4e-09  Score=84.78  Aligned_cols=110  Identities=13%  Similarity=0.046  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCH
Q psy13481        112 KSNEKKREAIHAYN----DGKFEDAVNAYSEAIKLNP--SSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSA  181 (231)
Q Consensus       112 ~a~~~~~~a~~~~~----~~~~~~Ai~~~~~al~~~p--~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~  181 (231)
                      .+.+++.+|..+..    .+++.+|+..|+++++..+  .++.+++++|.+|..    .+++.+|+.+|++++++ +.++
T Consensus        84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~  162 (212)
T 3rjv_A           84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG  162 (212)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH
Confidence            44556666666665    6677777777777776666  236777777777777    66777777777777776 5566


Q ss_pred             HHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q psy13481        182 AAYKFRGRAYRLL-G-----KWEEAAVDLRNACKIDFDEQADEWLKEV  223 (231)
Q Consensus       182 ~~~~~lg~~~~~~-g-----~~~~A~~~~~~al~l~p~~~~~~~l~~~  223 (231)
                      .+++++|.+|..- |     ++++|+.+|+++++.... .+...+..+
T Consensus       163 ~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~-~A~~~l~~l  209 (212)
T 3rjv_A          163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD-TGCEEFDRI  209 (212)
T ss_dssp             HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHh
Confidence            6777777776654 2     677777777777776542 234444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.05  E-value=1e-09  Score=89.16  Aligned_cols=105  Identities=19%  Similarity=0.191  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS------SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS--  180 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~--  180 (231)
                      .+..+..+..+|..+...|++++|+..|++++.+.+.      ...++.++|.++...|++++|+..+++++.+.+..  
T Consensus       179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (338)
T 3ro2_A          179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD  258 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence            5566778888888888888888888888888877432      25578888888888888888888888888877655  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        181 ----AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       181 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                          ..++..+|.++..+|++++|+..|++++.+.+.
T Consensus       259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence                668888888888888888888888888887543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.03  E-value=1.2e-09  Score=96.07  Aligned_cols=98  Identities=15%  Similarity=0.069  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CC
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-----PD  179 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-----p~  179 (231)
                      +......+..+..+|+|++|+..|++++++        +|+.+..+.++|.+|..+|+|++|+..+++++.+.     |+
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            445556677788999999999999999987        44457889999999999999999999999999874     55


Q ss_pred             CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        180 SA---AAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       180 ~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                      |+   ..++++|.+|..+|+|++|+..|++|+.+
T Consensus       389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            65   57899999999999999999999999986

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.98  E-value=9.6e-09  Score=71.07  Aligned_cols=78  Identities=9%  Similarity=0.015  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLN-------PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      +..++.+|..++..++|..|+..|++|++..       +....++..+|.+++++|++..|+..+++++.++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4667889999999999999999999999863       345788999999999999999999999999999999999988


Q ss_pred             HHHHH
Q psy13481        186 FRGRA  190 (231)
Q Consensus       186 ~lg~~  190 (231)
                      +++..
T Consensus        85 n~~~~   89 (104)
T 2v5f_A           85 NLKYF   89 (104)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            88743

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.98  E-value=1.7e-09  Score=93.66  Aligned_cols=97  Identities=14%  Similarity=0.018  Sum_probs=82.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCCH---H
Q psy13481        119 EAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-----PDSA---A  182 (231)
Q Consensus       119 ~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-----p~~~---~  182 (231)
                      .+......|+|++|+..|++++++        +|..+..+.++|.+|..+|+|++|+..+++++.+.     |+|+   .
T Consensus       304 ~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  383 (433)
T 3qww_A          304 EFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS  383 (433)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            344444578999999999999986        33446789999999999999999999999999773     5555   5


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCHH
Q psy13481        183 AYKFRGRAYRLLGKWEEAAVDLRNACKI-----DFDEQ  215 (231)
Q Consensus       183 ~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~  215 (231)
                      .++++|.+|..+|+|++|+..|++|+++     .|++.
T Consensus       384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp  421 (433)
T 3qww_A          384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP  421 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            7899999999999999999999999986     46654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.97  E-value=1.4e-09  Score=76.54  Aligned_cols=83  Identities=19%  Similarity=0.249  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      ....+..+|..+...|++++|+..|++++...|++       ..+++++|.++...|++++|+..|++++.+.| +...+
T Consensus        37 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~  115 (131)
T 1elr_A           37 NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVL  115 (131)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHH
Confidence            46778899999999999999999999999998877       99999999999999999999999999999999 68888


Q ss_pred             HHHHHHHHHcC
Q psy13481        185 KFRGRAYRLLG  195 (231)
Q Consensus       185 ~~lg~~~~~~g  195 (231)
                      ..++.+...++
T Consensus       116 ~~l~~~~~~~~  126 (131)
T 1elr_A          116 KKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888876554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.96  E-value=3.9e-09  Score=93.06  Aligned_cols=106  Identities=16%  Similarity=0.014  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYN-------DGKFE-------DAVNAYSEAIK-LNPSSALLYAKRGQSYLQLSKPNACIRDCSV  172 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~-------~~~~~-------~Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~  172 (231)
                      ..+.....|...|..+..       .|+++       +|+..|+++++ ++|++..+|..+|.++...|++++|+..|++
T Consensus       267 ~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~  346 (530)
T 2ooe_A          267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR  346 (530)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            345567888888888876       78987       89999999997 8999999999999999999999999999999


Q ss_pred             HHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        173 ALKINPDSA-AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       173 al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ++.++|.++ .+|..+|.++...|++++|...|++|++..|.
T Consensus       347 al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          347 LLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  388 (530)
T ss_dssp             HHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            999999985 68999999988888999999999999888775

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.92  E-value=6.5e-09  Score=91.65  Aligned_cols=105  Identities=11%  Similarity=-0.102  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSA-LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      ++....+..+|..+...|++++|...|++++++.|.++ .+|.++|.++.+.|++++|+..|++|+...|.+...+...+
T Consensus       318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a  397 (530)
T 2ooe_A          318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA  397 (530)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence            44567888899999999999999999999999999885 68988888887777777777777777777776666665555


Q ss_pred             HH-HHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        189 RA-YRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       189 ~~-~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      .+ +...|++++|...|+++++.+|++
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~~~p~~  424 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLKKYGDI  424 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHCCCC
Confidence            44 335677777777777777777754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.90  E-value=7.7e-09  Score=89.43  Aligned_cols=104  Identities=12%  Similarity=0.049  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----C
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL-----NPS---SALLYAKRGQSYLQLSKPNACIRDCSVALKIN-----P  178 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-----p  178 (231)
                      .+..+......+...|+|++|+..|++++++     .|+   ....+.++|.+|..+|+|++|+..+++++.+.     |
T Consensus       286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~  365 (429)
T 3qwp_A          286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG  365 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence            3445555566778899999999999999976     333   36789999999999999999999999999774     5


Q ss_pred             CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCHH
Q psy13481        179 DSA---AAYKFRGRAYRLLGKWEEAAVDLRNACKI-----DFDEQ  215 (231)
Q Consensus       179 ~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~  215 (231)
                      +++   ..++++|.+|..+|++++|+..|++|+++     .|++.
T Consensus       366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp  410 (429)
T 3qwp_A          366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS  410 (429)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            565   47899999999999999999999999986     56654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.89  E-value=4.3e-09  Score=92.46  Aligned_cols=107  Identities=8%  Similarity=-0.005  Sum_probs=94.5

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481        105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI  176 (231)
Q Consensus       105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~  176 (231)
                      +.+.++..+..+..+|.++...|+|++|+.+|++++++        +|+.+..++++|.+|..+|+|++|+..|++|+.+
T Consensus       343 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          343 FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45667888999999999999999999999999999987        5555788999999999999999999999999976


Q ss_pred             -----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        177 -----NPDSAA---AYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       177 -----~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                           .|+|+.   ...+++.++..++.+++|...|+++.+-.
T Consensus       423 ~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          423 LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 477754   66789999999999999999999987543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.89  E-value=3.5e-08  Score=71.72  Aligned_cols=91  Identities=13%  Similarity=0.084  Sum_probs=84.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q psy13481        119 EAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL-  193 (231)
Q Consensus       119 ~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~-  193 (231)
                      +|..+...+.+++|+..|+++.+.  .++.+++++|.+|..    .+++.+|+.+|+++.+.  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            777778888999999999999987  689999999999999    89999999999999987  689999999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHhcCCC
Q psy13481        194 ---LGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       194 ---~g~~~~A~~~~~~al~l~p~  213 (231)
                         .+++++|+.+|++|.+....
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             CCCCcCHHHHHHHHHHHHHCCCH
Confidence               99999999999999998653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.88  E-value=2.2e-08  Score=69.23  Aligned_cols=70  Identities=14%  Similarity=0.023  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        146 SALLYAKRGQSYLQLSKPNACIRDCSVALKIN-------PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      ++.-++.+|..++..|+|..|+.+|+.|+...       .....++..+|.+++.+|+++.|+..++++++++|++.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~   80 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            45678899999999999999999999999874       34578999999999999999999999999999999865

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.84  E-value=3.4e-08  Score=82.64  Aligned_cols=99  Identities=11%  Similarity=0.086  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLN--------PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS----  180 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~----  180 (231)
                      +..+..+|..+...|++++|+..|++++.+.        |....++.++|.++...|++++|+..+++++.+.+..    
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  172 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  172 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence            4567889999999999999999999999875        3456788899999999999999999999999998753    


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        181 -AAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       181 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                       ..++..+|.++...|++++|...+++++.+.
T Consensus       173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             4688999999999999999999999999873

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.83  E-value=1.3e-08  Score=85.14  Aligned_cols=102  Identities=7%  Similarity=0.047  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN--------  177 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--------  177 (231)
                      .+..+..+|..+...|++++|+..|++++.+.+..      ..+++++|.++...|++.+|+..+++++.+.        
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  131 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL  131 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence            35677889999999999999999999999886543      3447889999999999999999999999876        


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       178 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      |....++.++|.++...|++++|...+++++.+.+.
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            334567888999999999999999999999998774

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.82  E-value=1.3e-08  Score=69.12  Aligned_cols=70  Identities=13%  Similarity=0.099  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q psy13481        112 KSNEKKREAIHAYNDGK---FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA  181 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~---~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~  181 (231)
                      ++..+..+|..++..++   .++|..+++++++++|+++.+++.+|..+++.|+|.+|+..+++++..+|.++
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            46788889999876665   79999999999999999999999999999999999999999999999999843

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.81  E-value=5.7e-08  Score=84.76  Aligned_cols=96  Identities=16%  Similarity=0.076  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        113 SNEKKREAIHAYNDG---KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       113 a~~~~~~a~~~~~~~---~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      ..+++.+|..+...|   ++++|+..|+++++.  .++.+++++|.+|..    .+++.+|+.+|+++++..  ++.+++
T Consensus       328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~  403 (490)
T 2xm6_A          328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV  403 (490)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence            456677777777756   788888888888877  578889999999988    889999999999998864  688999


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q psy13481        186 FRGRAYRL----LGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       186 ~lg~~~~~----~g~~~~A~~~~~~al~l~p  212 (231)
                      ++|.+|..    .+++++|..+|++++..+|
T Consensus       404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            99999988    8899999999999999884

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.75  E-value=2.4e-08  Score=81.36  Aligned_cols=97  Identities=20%  Similarity=0.064  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-C-HHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD-S-AAAYKFRGRAY  191 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~-~-~~~~~~lg~~~  191 (231)
                      .....+|..+...|+|++|.+.|..++...|.+. +++.+|.++++.++|.+|+..|+.++...+. . ..+++++|.++
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence            4556788999999999999999999999999888 9999999999999999999999988765322 1 35899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcC
Q psy13481        192 RLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~  211 (231)
                      ..+|++++|+..|++++.-.
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTST
T ss_pred             HHCCCHHHHHHHHHHHhcCC
Confidence            99999999999999998654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.74  E-value=9.1e-08  Score=77.68  Aligned_cols=104  Identities=13%  Similarity=-0.027  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CChHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYN-----DG------KFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQL-----SKPNACIRDCS  171 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~-----~~------~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~Ai~~~~  171 (231)
                      ++++..++..|.....     .|      ....|...++++++++|+  +..+|..+|.+|...     |+.++|..+|+
T Consensus       149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe  228 (301)
T 3u64_A          149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE  228 (301)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence            3445666666655432     23      457899999999999999  677999999999996     99999999999


Q ss_pred             HHHhhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q psy13481        172 VALKINPDS-AAAYKFRGRAYRL-LGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       172 ~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~  213 (231)
                      +|+.++|+. ..+++.+|..+.. .|++++|...+++++..+|.
T Consensus       229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            999999975 9999999999988 59999999999999998876

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.67  E-value=1.2e-07  Score=69.87  Aligned_cols=80  Identities=8%  Similarity=-0.000  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDG---KFEDAVNAYSEAIKLN-P-SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~---~~~~Ai~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      +....++.|..+.+.+   ++.+++..|+.+++.+ | +..+++|++|..++++|+|..|+.+++++++++|+|..+...
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            3678899999999988   7779999999999998 7 568999999999999999999999999999999999998876


Q ss_pred             HHHHH
Q psy13481        187 RGRAY  191 (231)
Q Consensus       187 lg~~~  191 (231)
                      +..+-
T Consensus       111 k~~ie  115 (152)
T 1pc2_A          111 ERLID  115 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.67  E-value=2e-07  Score=80.92  Aligned_cols=94  Identities=12%  Similarity=0.016  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        115 EKKREAIHAYNDG---KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL----SKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       115 ~~~~~a~~~~~~~---~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      +++.+|..+...|   ++.+|+..|++++...+..+..++++|.+|...    +++.+|+.+|+++.   |.++.+++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            6677888888888   888899999999888888888888888888665    68888888888887   7888888888


Q ss_pred             HHH-H--HHcCCHHHHHHHHHHHHhcC
Q psy13481        188 GRA-Y--RLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       188 g~~-~--~~~g~~~~A~~~~~~al~l~  211 (231)
                      |.+ +  ...|++++|+.+|+++....
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g  281 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAAD  281 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence            888 4  46788888888888888765

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.66  E-value=1.1e-06  Score=76.44  Aligned_cols=93  Identities=14%  Similarity=0.055  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        114 NEKKREAIHAYN----DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       114 ~~~~~~a~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      .+++.+|..+..    .+++++|+..|++++..  .++.+++++|.+|..    .+++++|+.+|+++++.  .++.+++
T Consensus        76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~  151 (490)
T 2xm6_A           76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQ  151 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence            344444444444    45555555555554443  244445555555544    44555555555554443  2444555


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHhc
Q psy13481        186 FRGRAYRL----LGKWEEAAVDLRNACKI  210 (231)
Q Consensus       186 ~lg~~~~~----~g~~~~A~~~~~~al~l  210 (231)
                      ++|.+|..    .+++++|+..|++++..
T Consensus       152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~  180 (490)
T 2xm6_A          152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQ  180 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            55555544    44555555555555444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.62  E-value=4e-07  Score=64.80  Aligned_cols=103  Identities=9%  Similarity=-0.021  Sum_probs=86.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q psy13481        127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA---CIRDCSVALKIN-P-DSAAAYKFRGRAYRLLGKWEEAA  201 (231)
Q Consensus       127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---Ai~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~  201 (231)
                      .....+...|.+.+..++.+..+.+++|.++.+.++...   +|..++..+..+ | ..-..+|.+|..++.+|+|..|.
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            455667778888888888899999999999999998777   899999888876 4 45578999999999999999999


Q ss_pred             HHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481        202 VDLRNACKIDFDEQ-ADEWLKEVTPNKLN  229 (231)
Q Consensus       202 ~~~~~al~l~p~~~-~~~~l~~~~~~~~k  229 (231)
                      .++...+++.|++. +..+...+..++.|
T Consensus        95 ~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           95 KYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999875 77777666666543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.50  E-value=2e-06  Score=70.90  Aligned_cols=100  Identities=8%  Similarity=-0.139  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNP--SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD------SAAAYK  185 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~  185 (231)
                      ..+...|.++...|++++|+..+.++|..+|  ++..++..++.+++++|+++.|...+++....+|+      ......
T Consensus       101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L  180 (310)
T 3mv2_B          101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL  180 (310)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence            3456899999999999999999999999987  88999999999999999999999999999999983      333444


Q ss_pred             HHHHHHHHcC--CHHHHHHHHHHHHhcCCC
Q psy13481        186 FRGRAYRLLG--KWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       186 ~lg~~~~~~g--~~~~A~~~~~~al~l~p~  213 (231)
                      .-|++....|  ++++|...|+.+....|+
T Consensus       181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          181 AESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            4466677777  999999999999999887

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.47  E-value=1.2e-06  Score=75.92  Aligned_cols=86  Identities=14%  Similarity=0.100  Sum_probs=51.7

Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        117 KREAIHAYND----GKFEDAVNAYSEAIKLNPSSALLYAKRGQS-Y--LQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       117 ~~~a~~~~~~----~~~~~Ai~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +.+|..+...    +++++|+..|+++.   |.++.+++++|.+ +  ...+++.+|+.+|+++++.+  ++.+++++|.
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~  291 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGK  291 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence            4444444333    56666666666665   5666666666666 3  35566666666666666543  5666666666


Q ss_pred             HHHHcC-----CHHHHHHHHHHHH
Q psy13481        190 AYRLLG-----KWEEAAVDLRNAC  208 (231)
Q Consensus       190 ~~~~~g-----~~~~A~~~~~~al  208 (231)
                      +|. .|     ++++|+.+|+++.
T Consensus       292 ~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          292 LYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             HHH-cCCCCCCCHHHHHHHHHHHh
Confidence            665 44     6666666666666

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.45  E-value=2.1e-06  Score=62.10  Aligned_cols=79  Identities=19%  Similarity=0.205  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q psy13481        127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL----LGKWEEAAV  202 (231)
Q Consensus       127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~  202 (231)
                      +++++|+..|+++.+.....+.    +|.+|...+.+++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            5789999999999998754443    999999999999999999999997  689999999999999    899999999


Q ss_pred             HHHHHHhcC
Q psy13481        203 DLRNACKID  211 (231)
Q Consensus       203 ~~~~al~l~  211 (231)
                      +|+++.+..
T Consensus        83 ~~~~Aa~~g   91 (138)
T 1klx_A           83 YYSKACGLN   91 (138)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHcCC
Confidence            999999874

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.43  E-value=1.6e-06  Score=71.42  Aligned_cols=101  Identities=12%  Similarity=0.014  Sum_probs=83.4

Q ss_pred             HHHHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----------CCCCHHHH
Q psy13481        119 EAIHAYNDG--KFEDAVNAYSEAIKLNPS--SALLYAKRGQSYLQLSKPNACIRDCSVALKI----------NPDSAAAY  184 (231)
Q Consensus       119 ~a~~~~~~~--~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~----------~p~~~~~~  184 (231)
                      .|.+.+..|  ++.+|...|+++....|+  ....+++   ++.++|+|++|...++.++..          +|+++.++
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L  258 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL  258 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence            343355555  999999999999999887  3445554   899999999999999988877          58899999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVT  224 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~  224 (231)
                      .++..+...+|+  +|.+.++++...+|++....-+.+..
T Consensus       259 aN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~  296 (310)
T 3mv2_B          259 ANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEID  296 (310)
T ss_dssp             HHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            999999999998  89999999999999987555554443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.39  E-value=2.7e-06  Score=82.04  Aligned_cols=91  Identities=21%  Similarity=0.196  Sum_probs=76.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--------------------h--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481        119 EAIHAYNDGKFEDAVNAYSEAIK--------------------L--NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI  176 (231)
Q Consensus       119 ~a~~~~~~~~~~~Ai~~~~~al~--------------------~--~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~  176 (231)
                      .|..+...|.|++|..+|+++-.                    .  ..+.+.+|+++|.++...|++.+|+..|.++   
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            36777777777777666665431                    1  3467899999999999999999999999876   


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        177 NPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       177 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                        +++..|...|.++..+|+|++|+++|..|.+..++.
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence              899999999999999999999999999999988664

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.38  E-value=1.1e-06  Score=75.80  Aligned_cols=90  Identities=12%  Similarity=0.101  Sum_probs=75.9

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481        105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI  176 (231)
Q Consensus       105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~  176 (231)
                      +.+.++..+..+..+|.++...|+|++|+.++++++.+        +|..+..++++|.+|..+|+|++|+..+++|+.+
T Consensus       321 lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          321 LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            45677888999999999999999999999999999986        4555778999999999999999999999999977


Q ss_pred             -----CCCCHH---HHHHHHHHHHHc
Q psy13481        177 -----NPDSAA---AYKFRGRAYRLL  194 (231)
Q Consensus       177 -----~p~~~~---~~~~lg~~~~~~  194 (231)
                           .|+|+.   ++.+++.+...+
T Consensus       401 ~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          401 MRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHH
Confidence                 477765   445566665443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.36  E-value=9.8e-07  Score=76.27  Aligned_cols=80  Identities=16%  Similarity=0.117  Sum_probs=70.5

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q psy13481        105 VSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL--------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI  176 (231)
Q Consensus       105 ~~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~  176 (231)
                      +.+.++..+..+..+|.++..+|+|++|+.+|++++.+        +|+.+..++++|.+|..+|+|++|+..|++|+.+
T Consensus       332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            45667888999999999999999999999999999987        5556788999999999999999999999999987


Q ss_pred             C-----CCCHHHH
Q psy13481        177 N-----PDSAAAY  184 (231)
Q Consensus       177 ~-----p~~~~~~  184 (231)
                      .     |+|+.+-
T Consensus       412 ~~~~lG~~Hp~~~  424 (433)
T 3qww_A          412 MEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHTCTTCHHHH
T ss_pred             HHHHcCCCChHHH
Confidence            4     7776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.26  E-value=8e-06  Score=78.81  Aligned_cols=94  Identities=14%  Similarity=0.145  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---------------
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP---------------  178 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p---------------  178 (231)
                      ..+...|..++..|+|++|+.+|.++        ..|..+|.++.++|+|++|+..+++|....+               
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence            45668999999999999999999986        5899999999999999999999999855543               


Q ss_pred             ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        179 ----------DSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       179 ----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                                .++..+..++..|...|.|++|+..|++++.+++.+.
T Consensus      1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~ 1314 (1630)
T 1xi4_A         1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHM 1314 (1630)
T ss_pred             HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh
Confidence                      2444566778889999999999999999999998653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.25  E-value=9.2e-07  Score=76.19  Aligned_cols=88  Identities=16%  Similarity=0.216  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH-------
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF-------  186 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~-------  186 (231)
                      ..+...|..++..|+|++|+.+|.++        ..|.++|.++.++|+|++|+..+.++     .++.+|..       
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD  189 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence            37777888888888888888888866        46778888888888888888888877     24444443       


Q ss_pred             -----------------------HHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        187 -----------------------RGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       187 -----------------------lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                                             +..+|...|++++|+..+++++.+++.+
T Consensus       190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah  240 (449)
T 1b89_A          190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH  240 (449)
T ss_dssp             TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred             cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence                                   3356777778888888888888887754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.25  E-value=4.2e-06  Score=71.00  Aligned_cols=98  Identities=11%  Similarity=0.055  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CC---
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP---DS---  180 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p---~~---  180 (231)
                      +..+..+|..+...|+|.+|+..+++++..      .+....++..+|.+|..+|+|.+|...+++++.+.+   ..   
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  214 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT  214 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence            567788999999999999999999999876      334478999999999999999999999999987753   22   


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        181 -AAAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       181 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                       ...+..+|..+...|+|..|..+|..++..
T Consensus       215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          215 VAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence             356788899999999999999999999875

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.24  E-value=1.1e-05  Score=59.81  Aligned_cols=94  Identities=12%  Similarity=0.054  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CC-
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---------ALLYAKRGQSYLQLSKPNACIRDCSVALKINP---DS-  180 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p---~~-  180 (231)
                      ..++.....++..+.|+.|+-....++.+..++         ..++..+|.+++..++|..|...|++||....   ++ 
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            456778888999999999999999988764322         34788899999999999999999999876541   11 


Q ss_pred             ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481        181 ---------------------AAAYKFRGRAYRLLGKWEEAAVDLRNA  207 (231)
Q Consensus       181 ---------------------~~~~~~lg~~~~~~g~~~~A~~~~~~a  207 (231)
                                           ....|.++.||..+|++++|+..++..
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                                 257899999999999999999998864

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.23  E-value=1e-05  Score=68.54  Aligned_cols=98  Identities=12%  Similarity=0.051  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNP------SSALLYAKRGQSYLQLSKPNACIRDCSVALKIN------PDSA  181 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~------p~~~  181 (231)
                      ......|..+...|++++|+.++++++...+      ....++.++|.+|...|+|.+|+..+++++...      +...
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~  175 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV  175 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence            3444556666667788888888888776522      236788999999999999999999999998763      3346


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        182 AAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       182 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      .++..+|.+|..+|+|++|...|++++.+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          176 DVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            789999999999999999999999999874

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.10  E-value=1.7e-05  Score=56.31  Aligned_cols=79  Identities=9%  Similarity=-0.003  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFED---AVNAYSEAIKLN-P-SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFR  187 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~---Ai~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~l  187 (231)
                      ....+..|..+....+...   +|.+++..++.+ | ..-++++.+|..++++|+|..|+.+++.+|++.|.|..+....
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            5677888989988887776   999999999887 5 5678999999999999999999999999999999999987766


Q ss_pred             HHHH
Q psy13481        188 GRAY  191 (231)
Q Consensus       188 g~~~  191 (231)
                      ..+-
T Consensus       115 ~~i~  118 (126)
T 1nzn_A          115 RLID  118 (126)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.09  E-value=4e-05  Score=66.02  Aligned_cols=97  Identities=15%  Similarity=0.097  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------------------------HHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAK------------------------------RGQSYLQ  159 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~------------------------------la~~~~~  159 (231)
                      ...+..+..+|.++...|+|++|++.|.++     +++..|..                              +..+|.+
T Consensus       145 Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek  219 (449)
T 1b89_A          145 YNNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD  219 (449)
T ss_dssp             HHHTTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHH
Confidence            334567778999999999999999999999     24444433                              3367888


Q ss_pred             cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcC
Q psy13481        160 LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL--GKWEEAAVDLRNACKID  211 (231)
Q Consensus       160 ~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~  211 (231)
                      .|++.+|+..+++++.+++.+...|..+|.+|..-  ++..+.++.|...+.+.
T Consensus       220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~  273 (449)
T 1b89_A          220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP  273 (449)
T ss_dssp             TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHH
T ss_pred             CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCc
Confidence            89999999999999999999999999999988654  45666666666544443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.08  E-value=2.3e-05  Score=63.59  Aligned_cols=106  Identities=12%  Similarity=0.087  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHH------cCCHHHHHHH-----HHHHH-HhCCCCHHHHHHHHHHHHH---c--CC------hHH
Q psy13481        109 DIDKSNEKKREAIHAYN------DGKFEDAVNA-----YSEAI-KLNPSSALLYAKRGQSYLQ---L--SK------PNA  165 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~------~~~~~~Ai~~-----~~~al-~~~p~~~~~~~~la~~~~~---~--~~------~~~  165 (231)
                      ++..+..++.+|..|..      ...|.+++..     +..++ +.+|+++.++++.|.++..   .  |.      ...
T Consensus       102 ~~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~  181 (301)
T 3u64_A          102 AYSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHA  181 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHH
Confidence            34455666666654432      2455544442     23333 3588889999999888755   2  32      578


Q ss_pred             HHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCH
Q psy13481        166 CIRDCSVALKINPD--SAAAYKFRGRAYRLL-----GKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       166 Ai~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~l~p~~  214 (231)
                      |...++++++++|+  +..+|..+|..|...     |+.++|..+|++|++++|+.
T Consensus       182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999  677999999999996     99999999999999999963

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.02  E-value=6.2e-05  Score=53.71  Aligned_cols=67  Identities=6%  Similarity=-0.039  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        147 ALLYAKRGQSYLQLSKP---NACIRDCSVALKINPD-SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~~---~~Ai~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ..+.+++|-++.+..+.   ..+|..++..+...|. .-..++.+|..++.+|+|..|..+....+++.|+
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~  110 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  110 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            34444444444444432   2344444444444442 2334444555555555555555555555555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.97  E-value=2e-05  Score=66.28  Aligned_cols=72  Identities=21%  Similarity=0.217  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA  182 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~  182 (231)
                      +..+..+...|..++..|++++|+..+++|+.++| +..+|..+|.++...|++++|+..|.+|+.++|....
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            33466777788888888999999999999999997 5788899999999999999999999999999998753

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.97  E-value=0.00028  Score=50.91  Aligned_cols=84  Identities=6%  Similarity=-0.029  Sum_probs=62.1

Q ss_pred             CCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHH
Q psy13481        145 SSALLYAKRGQSYLQLSKP---NACIRDCSVALKINPDS-AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEW  219 (231)
Q Consensus       145 ~~~~~~~~la~~~~~~~~~---~~Ai~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~  219 (231)
                      -+....+++|.++.+..+.   ..+|..++..+...|.. -..+|.+|..++.+|+|..|..+....+++.|++. +..+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            3677788888888887764   36788888888877743 45778888888888888888888888888888764 5555


Q ss_pred             HHhhchhhh
Q psy13481        220 LKEVTPNKL  228 (231)
Q Consensus       220 l~~~~~~~~  228 (231)
                      ...+..++.
T Consensus       117 k~~Ie~~i~  125 (144)
T 1y8m_A          117 KSMVEDKIQ  125 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.93  E-value=0.00014  Score=53.10  Aligned_cols=102  Identities=12%  Similarity=0.019  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481        112 KSNEKKREAIHAYNDGKF------EDAVNAYSEAIKLNPSS--------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN  177 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~------~~Ai~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~  177 (231)
                      +.+.|+......-+.|+.      +.-++.|++|+..-|-.        ...|.+.|.. ..+++.+.|...|+.++.+.
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh
Confidence            356788888888888998      89999999999987642        5677777755 67799999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        178 PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       178 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ...+.+|...|..-..+|+...|.+.+.+|+.+.|..
T Consensus        91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            8889999999999999999999999999999999974

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.93  E-value=0.00015  Score=51.70  Aligned_cols=79  Identities=8%  Similarity=-0.048  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKF---EDAVNAYSEAIKLNPS-SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~---~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      ....+..|..+....+.   .++|.+++..++.+|. .-++++.+|..++++|+|..|..+++.++++.|+|..+.....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            46777888888877654   4799999999999984 5889999999999999999999999999999999999877665


Q ss_pred             HHH
Q psy13481        189 RAY  191 (231)
Q Consensus       189 ~~~  191 (231)
                      .+-
T Consensus       120 ~Ie  122 (134)
T 3o48_A          120 MVE  122 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.89  E-value=0.00025  Score=51.22  Aligned_cols=79  Identities=6%  Similarity=-0.055  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFE---DAVNAYSEAIKLNP-SSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~---~Ai~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      ....|+.|..+....+..   ++|.+++..++..| ..-++++.+|..++++|+|..|..+++.+|++.|+|..+.....
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            567788888888876554   79999999999998 45789999999999999999999999999999999998876655


Q ss_pred             HHH
Q psy13481        189 RAY  191 (231)
Q Consensus       189 ~~~  191 (231)
                      .+-
T Consensus       119 ~Ie  121 (144)
T 1y8m_A          119 MVE  121 (144)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.75  E-value=0.0021  Score=54.56  Aligned_cols=116  Identities=18%  Similarity=0.197  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----------------------ALLYAKRGQSYLQLSKPNAC  166 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A  166 (231)
                      |......+...|......|+...|+..+.+|+.+....                      ..+...++.++...|++.+|
T Consensus       111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a  190 (388)
T 2ff4_A          111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV  190 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            44456666777777788899999999999999884211                      12344567888999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCHHHHHHHHhhc
Q psy13481        167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK-------IDFDEQADEWLKEVT  224 (231)
Q Consensus       167 i~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------l~p~~~~~~~l~~~~  224 (231)
                      +..+..++..+|.+-.+|..+-.++...|+..+|+..|+++..       ++|.....+++..+.
T Consensus       191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il  255 (388)
T 2ff4_A          191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL  255 (388)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988754       578877777666654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.66  E-value=0.00062  Score=61.98  Aligned_cols=100  Identities=7%  Similarity=-0.056  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKL-NPSSALLYAKRGQSYLQLSK-PNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-~p~~~~~~~~la~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ..|...+....+.|+.+.|...|.+|++. .+....+|...|.+.++.++ ++.|...|+++++..|+++..|...+...
T Consensus       435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe  514 (679)
T 4e6h_A          435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL  514 (679)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            35666666667789999999999999988 44456788888888878765 99999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ...|+.+.|...|++|+...|+
T Consensus       515 ~~~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          515 IYVNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HHHTCHHHHHHHHHHHTTTSSS
T ss_pred             HhCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999884

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.57  E-value=0.00056  Score=62.30  Aligned_cols=81  Identities=12%  Similarity=0.047  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481        130 EDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACI-RDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC  208 (231)
Q Consensus       130 ~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai-~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  208 (231)
                      ......|++++...|.++.+|+..|..+...|+..+|+ ..|++|+..+|.+...|..++......|+++.|...|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             hc
Q psy13481        209 KI  210 (231)
Q Consensus       209 ~l  210 (231)
                      ..
T Consensus       406 ~~  407 (679)
T 4e6h_A          406 DR  407 (679)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.42  E-value=0.00093  Score=49.53  Aligned_cols=79  Identities=15%  Similarity=0.149  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC-------------------CHHHHHHHHHHHHHcCChHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKL------NPS-------------------SALLYAKRGQSYLQLSKPNAC  166 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~------~p~-------------------~~~~~~~la~~~~~~~~~~~A  166 (231)
                      .+..+...|..++..++|..|...|+++|..      .+.                   ..++.+.+|.||.+++++.+|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            3678888999999999999999999999865      111                   126889999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        167 IRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       167 i~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      +..++.. -..-+.+++...+|..|
T Consensus       142 i~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHhcC-CchhcCHHHHHHHHHHh
Confidence            9988543 22336777777787765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.0031  Score=57.84  Aligned_cols=80  Identities=14%  Similarity=0.118  Sum_probs=65.5

Q ss_pred             CHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        128 KFEDAVNAYSEAIKL--------NPSS----------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       128 ~~~~Ai~~~~~al~~--------~p~~----------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +=-+|+..+.++++.        .+.+          ...+..-+..+...|+|+-|+...++|+..-|.....|+.|+.
T Consensus       300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~  379 (754)
T 4gns_B          300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLAR  379 (754)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence            344678888877742        2222          3355556888889999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q psy13481        190 AYRLLGKWEEAAVDLRNA  207 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~a  207 (231)
                      ||..+|+|+.|+-.+..+
T Consensus       380 vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          380 CHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccHHHHHHHHhcC
Confidence            999999999999887766

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.81  E-value=0.061  Score=40.12  Aligned_cols=94  Identities=15%  Similarity=0.127  Sum_probs=76.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hC---------------CC
Q psy13481        117 KREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK--IN---------------PD  179 (231)
Q Consensus       117 ~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~--~~---------------p~  179 (231)
                      ...+..++-.|.|..|+-++.     +-+...+.+--+.||.++++|..|+..++..+.  .+               |.
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~  111 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG  111 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred             hhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence            346778888999999987754     335567777789999999999999999999982  22               33


Q ss_pred             CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        180 SAA-AYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       180 ~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      +-. .+..+|..+...|+.++|+..|......+|=-.
T Consensus       112 DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~  148 (242)
T 3kae_A          112 DEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS  148 (242)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence            443 567789999999999999999999999988654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.78  E-value=0.064  Score=46.92  Aligned_cols=110  Identities=7%  Similarity=-0.042  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL--NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINP-DSAAAYKFRGR  189 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p-~~~~~~~~lg~  189 (231)
                      ...+..+...+.+.|++++|+.+|++....  .| +...|+.+-..|.+.|+.++|...|+...+..- -+...|..+-.
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            356667778889999999999999998875  44 678888999999999999999999999887653 36778899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHh--cCCCHHHHHHHHhh
Q psy13481        190 AYRLLGKWEEAAVDLRNACK--IDFDEQADEWLKEV  223 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~l~~~  223 (231)
                      +|...|++++|...|++...  ..|+......+...
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~  219 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW  219 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred             HHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence            99999999999999998765  56776655555544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.0094  Score=54.68  Aligned_cols=61  Identities=11%  Similarity=0.073  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA  173 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~a  173 (231)
                      ...+...+..+..+|+|+-|+.+-++|+...|.....|+.|+.||..+|+|+.|+-.++-+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3456677888999999999999999999999999999999999999999999999887765

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.56  E-value=0.022  Score=49.83  Aligned_cols=80  Identities=15%  Similarity=-0.017  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL  193 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~  193 (231)
                      ..+..+|....-...+..|..+|.+|+.++|++...|+.+|.+....|++-+|+-+|-+++....-.+.+..++...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            45667888888889999999999999999999999999999999999999999999999998887788888888888765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.51  E-value=0.033  Score=48.61  Aligned_cols=94  Identities=11%  Similarity=-0.086  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS-KPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ...|...+....+.++.+.|...|.+| ...+.....|...|...+..+ +++.|...|+.++...|+++..|...+...
T Consensus       286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            356677777777788899999999999 433345678887888777777 599999999999999999998888888888


Q ss_pred             HHcCCHHHHHHHHHHH
Q psy13481        192 RLLGKWEEAAVDLRNA  207 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~a  207 (231)
                      ...|+.+.|...|+++
T Consensus       365 ~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          365 LRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHTCHHHHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            8999999999888886

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.51  E-value=0.029  Score=49.00  Aligned_cols=101  Identities=8%  Similarity=-0.107  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------------------------------
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQS------------------------------------  156 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~------------------------------------  156 (231)
                      ...|...+..+...|+.++|...|++|+.. |.+...|...+..                                    
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            567888888888999999999999999999 9886655544332                                    


Q ss_pred             ----HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCHH
Q psy13481        157 ----YLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG-KWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       157 ----~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~  215 (231)
                          ..+.+..+.|...|.+| ...+.....|...+..-...| +.+.|...|+.+++..|+..
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~  354 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST  354 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH
Confidence                22355677788888888 433345667766676666556 58999999999998888753

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=96.41  E-value=0.023  Score=49.71  Aligned_cols=78  Identities=9%  Similarity=-0.017  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCHHHHHHHHhhchh
Q psy13481        149 LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKEVTPN  226 (231)
Q Consensus       149 ~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~l~~~~~~  226 (231)
                      .+..+|.+......+..|..+|.+|+.++|.++..|+.+|.+....|+.-.|+-+|.+++... |-..+...+..+..+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            566789999999999999999999999999999999999999999999999999999999764 445556555555544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.19  E-value=0.081  Score=42.26  Aligned_cols=62  Identities=19%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481        121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA  182 (231)
Q Consensus       121 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~  182 (231)
                      ..+++.|+.++|+......|+.+|.++.....+-..+.-.|+++.|..-++.+.+++|....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            45678899999999999999999999999999999999999999999999999999998654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.92  E-value=0.14  Score=43.41  Aligned_cols=94  Identities=10%  Similarity=-0.056  Sum_probs=75.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCCHH----HH
Q psy13481        118 REAIHAYNDGKFEDAVNAYSEAIKLNPS------SALLYAKRGQSYLQLSKPNACIRDCSVALKIN---PDSAA----AY  184 (231)
Q Consensus       118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~---p~~~~----~~  184 (231)
                      .+|..++..|+|.+|+..+++..+-...      ..+.+..-..+|..++++..+...+.+|....   +.++.    ..
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6889999999999999999998875222      25667778999999999999999999886554   23443    44


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHhcC
Q psy13481        185 KFRGRAYR-LLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       185 ~~lg~~~~-~~g~~~~A~~~~~~al~l~  211 (231)
                      ..-|..+. ..++|..|...|-.+++-.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            56688888 8999999999999987543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.57  E-value=0.064  Score=39.08  Aligned_cols=81  Identities=12%  Similarity=-0.122  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..|...|.. ...++.++|.+.|+.++.++...+.+|...|..-.+.|+...|...+.+|+.+.|.....+ ..+..-.
T Consensus        61 I~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l-e~a~~nl  138 (161)
T 4h7y_A           61 ARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML-EIALRNL  138 (161)
T ss_dssp             HHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH-HHHHHHH
T ss_pred             HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH-HHHHHhh
Confidence            4555555544 4558999999999999999999999999999999999999999999999999999866543 3344444


Q ss_pred             HcC
Q psy13481        193 LLG  195 (231)
Q Consensus       193 ~~g  195 (231)
                      ..|
T Consensus       139 ~~~  141 (161)
T 4h7y_A          139 NLQ  141 (161)
T ss_dssp             HTT
T ss_pred             hcC
Confidence            444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.52  E-value=0.28  Score=42.80  Aligned_cols=96  Identities=9%  Similarity=0.035  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481        127 GKFEDAVNAYSEAIKL--NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-PDSAAAYKFRGRAYRLLGKWEEAAVD  203 (231)
Q Consensus       127 ~~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~  203 (231)
                      ++++.|..+|++....  .| +...|+.+-.+|.+.|++++|...|+...... .-+...|..+-.+|...|++++|...
T Consensus        84 ~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence            3478899999988765  34 67889999999999999999999999988764 23778888899999999999999999


Q ss_pred             HHHHHh--cCCCHHHHHHHHhh
Q psy13481        204 LRNACK--IDFDEQADEWLKEV  223 (231)
Q Consensus       204 ~~~al~--l~p~~~~~~~l~~~  223 (231)
                      |....+  +.|+......+-..
T Consensus       163 ~~~M~~~G~~Pd~~ty~~Li~~  184 (501)
T 4g26_A          163 DAHMVESEVVPEEPELAALLKV  184 (501)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHH
Confidence            998876  45775544444433

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.47  E-value=0.073  Score=42.52  Aligned_cols=60  Identities=17%  Similarity=0.072  Sum_probs=56.8

Q ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        156 SYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       156 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .+++.|+.++|+..+...+..+|.|+.....+-..++..|+|+.|.+.++.+.+++|+..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            456889999999999999999999999999999999999999999999999999999855

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.27  E-value=0.11  Score=43.79  Aligned_cols=63  Identities=8%  Similarity=0.046  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK  175 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~  175 (231)
                      ..++..++..+...|++.+|+..+..++..+|-+-.+|..+-.++...|+..+|+..|+++-.
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345556777888999999999999999999999999999999999999999999999988654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.19  E-value=0.56  Score=40.26  Aligned_cols=98  Identities=13%  Similarity=0.046  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHh---hCCCCH--
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNP--S----SALLYAKRGQSYLQLSKPNACIRDCSVALK---INPDSA--  181 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~~~Ai~~~~~al~---~~p~~~--  181 (231)
                      +.....+|..+...|++.+|...+.....-.-  .    -..++.....+++..++|..|...++++..   -.+.++  
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            56667899999999999999999998764311  1    156788889999999999999999998632   233443  


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        182 --AAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       182 --~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                        ..+...|..+...++|.+|..+|..++..
T Consensus       217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              35677899999999999999999998864

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.97  E-value=0.12  Score=44.24  Aligned_cols=98  Identities=7%  Similarity=-0.085  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCH----HHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNP---SSALLYAKRGQSYLQLSKPNACIRDCSVALKINP--DSA----AAY  184 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p--~~~----~~~  184 (231)
                      ..+..+|..+++.|++++|++.|.++.....   ...+++.....+++..++|..+...++++-.+..  .++    ...
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            3556799999999999999999999887643   3378888899999999999999999999865532  222    244


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      ...|.++...++|..|...|..++.-.
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            556788889999999999998877654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.95  E-value=0.43  Score=43.33  Aligned_cols=45  Identities=18%  Similarity=0.158  Sum_probs=33.7

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy13481        124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVA  173 (231)
Q Consensus       124 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~a  173 (231)
                      ...|+++.|.+..     ..-++...|.++|..+.+.++++.|+.+|.++
T Consensus       663 l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3344555554442     24467899999999999999999999999875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.78  E-value=0.68  Score=34.53  Aligned_cols=99  Identities=8%  Similarity=-0.001  Sum_probs=61.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHH--------
Q psy13481        121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN--------PDSAAAY--------  184 (231)
Q Consensus       121 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~--------p~~~~~~--------  184 (231)
                      ..+...|+++.|.+..+..     ++...|..+|...+..|++.-|..+|.++-...        ..+..-+        
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~   87 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQ   87 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456778888888876654     567888888888888888888888877542221        1122211        


Q ss_pred             -----HHHHHHHHHcCCHHHHHHHHHHHHh----------cCCCHHHHHHHHhhc
Q psy13481        185 -----KFRGRAYRLLGKWEEAAVDLRNACK----------IDFDEQADEWLKEVT  224 (231)
Q Consensus       185 -----~~lg~~~~~~g~~~~A~~~~~~al~----------l~p~~~~~~~l~~~~  224 (231)
                           .....++..+|+++++++.|.+.-+          ..|++.+.+.+..+.
T Consensus        88 ~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~a~~~~~~~~  142 (177)
T 3mkq_B           88 TREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAE  142 (177)
T ss_dssp             HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHHHHHHHHHhC
Confidence                 2234456677777777776654432          346555666555543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.87  E-value=2.7  Score=40.00  Aligned_cols=101  Identities=4%  Similarity=-0.147  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIK-----LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKIN-PDSAAAYKF  186 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~-----~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~-p~~~~~~~~  186 (231)
                      -..+..+-..+++.|+.++|..+|.+.-+     ..| +...|+-+-..|.+.|+.++|...|++..+.. .-|...|..
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            45677788899999999999999977543     355 67899999999999999999999999987765 246777887


Q ss_pred             HHHHHHHcCC-HHHHHHHHHHHHhc--CCCH
Q psy13481        187 RGRAYRLLGK-WEEAAVDLRNACKI--DFDE  214 (231)
Q Consensus       187 lg~~~~~~g~-~~~A~~~~~~al~l--~p~~  214 (231)
                      +-.++...|+ .++|...|+.....  .||.
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~  236 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQA  236 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCCh
Confidence            8778888898 57888999888764  4553

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.03  E-value=0.33  Score=42.50  Aligned_cols=65  Identities=12%  Similarity=0.056  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-------AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      +..++.+-..|+..+.|++|.....++.  .|.+       ...+|.+|.++...++|.+|..+|..|++..|.
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~  302 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH  302 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            6788889999999999999999999985  4432       346678999999999999999999999998774

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.71  E-value=0.54  Score=45.27  Aligned_cols=93  Identities=13%  Similarity=0.033  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy13481        115 EKKREAIHAYNDGKFEDAVNAYSEAIKL-----------------------NPSSALLYAKRGQSYLQLSKPNACIRDCS  171 (231)
Q Consensus       115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~  171 (231)
                      ..+.+|..++..|++++|..+|.++-.-                       ....+.+|.....++.+.+.++.++....
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3488999999999999999999887321                       11124677888889999999999999999


Q ss_pred             HHHhhCC-CCHH----HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481        172 VALKINP-DSAA----AYKFRGRAYRLLGKWEEAAVDLRNA  207 (231)
Q Consensus       172 ~al~~~p-~~~~----~~~~lg~~~~~~g~~~~A~~~~~~a  207 (231)
                      .||+..+ ++..    .|.++-..+..+|+|++|...+...
T Consensus       924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            9998775 3332    6778888899999999999888654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.31  E-value=1.2  Score=33.12  Aligned_cols=55  Identities=7%  Similarity=0.028  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481        146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC  208 (231)
Q Consensus       146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  208 (231)
                      ++...+.+|   +.+|+++.|...++..     ++...|..+|......|+++-|..+|+++-
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            556666666   5889999999987654     678899999999999999999999999873

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=90.72  E-value=2.6  Score=38.11  Aligned_cols=91  Identities=11%  Similarity=-0.017  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIK--------LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~--------~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      ...|..+|..+...++++.|+.+|.++-.        ....+...+..++......|++..|...|-+.   .  +   +
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~---g--~---~  752 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA---G--D---I  752 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---T--C---H
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc---C--C---H
Confidence            36788999999999999999999998621        12233444455555555666666555544321   1  1   1


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      ...-.+|..+++|++|+..-+   ...|..
T Consensus       753 ~~a~~~~~~~~~~~~A~~lA~---~~~~~~  779 (814)
T 3mkq_A          753 QGAKDLLIKSQRFSEAAFLGS---TYGLGD  779 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH---HTTCCH
T ss_pred             HHHHHHHHHcCChHHHHHHHH---HhCCCh
Confidence            223345666677777666533   355554

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=90.26  E-value=1.6  Score=39.21  Aligned_cols=87  Identities=11%  Similarity=-0.002  Sum_probs=61.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy13481        122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAA  201 (231)
Q Consensus       122 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  201 (231)
                      .++..+...++...+.+......++. ..-.++...++.|++..|..+|.+.-.-........|.+|.++..+|+.++|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~  339 (618)
T 1qsa_A          261 RLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK  339 (618)
T ss_dssp             TSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHH
Confidence            33444535566677776655444333 33344444557799999999997765544456788899999999999999999


Q ss_pred             HHHHHHHh
Q psy13481        202 VDLRNACK  209 (231)
Q Consensus       202 ~~~~~al~  209 (231)
                      ..|+++..
T Consensus       340 ~~~~~~a~  347 (618)
T 1qsa_A          340 EILHQLMQ  347 (618)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99999876

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=90.11  E-value=4.6  Score=30.11  Aligned_cols=68  Identities=9%  Similarity=0.078  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h---------------CCCCHHH-HHHHHHHHHHcCChHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIK--L---------------NPSSALL-YAKRGQSYLQLSKPNACIRDCSVA  173 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~--~---------------~p~~~~~-~~~la~~~~~~~~~~~Ai~~~~~a  173 (231)
                      ++...+-.+.++...++|..|+..++..+.  .               +|.+-+. +..+|.++.+.|+-++||.++...
T Consensus        61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S  140 (242)
T 3kae_A           61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS  140 (242)
T ss_dssp             BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence            356777888999999999999999999992  2               4445554 556799999999999999999987


Q ss_pred             HhhCCC
Q psy13481        174 LKINPD  179 (231)
Q Consensus       174 l~~~p~  179 (231)
                      ....|-
T Consensus       141 f~~~~l  146 (242)
T 3kae_A          141 FGKSFL  146 (242)
T ss_dssp             HHHCCC
T ss_pred             cCCccc
Confidence            776643

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=88.41  E-value=4.6  Score=29.51  Aligned_cols=63  Identities=8%  Similarity=0.133  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH---HHHHHHHcCChHHHHHHHHHHHhh
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAK---RGQSYLQLSKPNACIRDCSVALKI  176 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~---la~~~~~~~~~~~Ai~~~~~al~~  176 (231)
                      ...+..|..++..|+|=+|-+.++.+....+..      ...+..   .|..+.+.||...|...+.+++..
T Consensus        33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~  104 (161)
T 2ijq_A           33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY  104 (161)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            344678899999999999999999999887654      222223   345667789999999999999874

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=87.12  E-value=11  Score=30.66  Aligned_cols=27  Identities=11%  Similarity=-0.230  Sum_probs=24.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481        179 DSAAAYKFRGRAYRLLGKWEEAAVDLR  205 (231)
Q Consensus       179 ~~~~~~~~lg~~~~~~g~~~~A~~~~~  205 (231)
                      .++..+..+|..|...|++.+|..+|-
T Consensus       132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          132 GDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            477889999999999999999999886

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=86.87  E-value=8.5  Score=29.17  Aligned_cols=93  Identities=8%  Similarity=-0.041  Sum_probs=66.2

Q ss_pred             HHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy13481        134 NAYSEAIKL---------NPSSALLYAKRGQSYLQLSKPNACIRDCSVALKI--NPDSAAAYKFRGRAYRLLGKWEEAAV  202 (231)
Q Consensus       134 ~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~  202 (231)
                      .++++++..         +|....+|...+..+ ..++...+...|.-....  .-..+..|-..|..+...|++.+|..
T Consensus        58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~  136 (202)
T 3esl_A           58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV  136 (202)
T ss_dssp             HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            577777765         333356677766654 234466777777776554  45678888889999999999999999


Q ss_pred             HHHHHHhcC--CCHHHHHHHHhhchhh
Q psy13481        203 DLRNACKID--FDEQADEWLKEVTPNK  227 (231)
Q Consensus       203 ~~~~al~l~--p~~~~~~~l~~~~~~~  227 (231)
                      .|+.++...  |-+...+.......++
T Consensus       137 Vy~~GI~~~A~P~~rL~~~~~~F~~R~  163 (202)
T 3esl_A          137 LLELGAENNCRPYNRLLRSLSNYEDRL  163 (202)
T ss_dssp             HHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence            999999876  5566666665555544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.01  E-value=0.77  Score=39.17  Aligned_cols=65  Identities=11%  Similarity=0.042  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPD---SAAAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                      ...++..+|..|++.|++..|+..|.++......   -...+...-.++...++|..+...+.++..+
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            3557888999999999999999999998876533   2467788888999999999999999999765

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=84.78  E-value=5.9  Score=25.40  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL  142 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~  142 (231)
                      .....+..+...|...-+.|+|.+|+.+|..+++.
T Consensus        14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            44566778888898899999999999999888764

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.36  E-value=2.1  Score=37.45  Aligned_cols=67  Identities=13%  Similarity=0.046  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS  180 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~  180 (231)
                      .+..+..+-..|...+.|+.|..+..++.  .|.+       ..+++..|.++.-.++|.+|..++..|+...|.+
T Consensus       230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            34555566677888899999999999884  5533       5677888999999999999999999999988754

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=84.33  E-value=16  Score=30.02  Aligned_cols=93  Identities=14%  Similarity=0.065  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------CCCCHHHHHHHHHHHHHcCC-----
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKL-------------------------NPSSALLYAKRGQSYLQLSK-----  162 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~-------------------------~p~~~~~~~~la~~~~~~~~-----  162 (231)
                      -+.+...+.-+.+.++|++|++++......                         -+-+.....++..++.....     
T Consensus        35 HQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r  114 (336)
T 3lpz_A           35 AQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR  114 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH
Confidence            355566677777888888888764443321                         11122333333444333332     


Q ss_pred             ---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy13481        163 ---PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLR  205 (231)
Q Consensus       163 ---~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  205 (231)
                         ...|+.|-.+.=...-.++..+..+|..|...+++.+|..+|-
T Consensus       115 ~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          115 KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence               1234444433111122577888899999999999999998884

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=83.89  E-value=3.7  Score=25.73  Aligned_cols=28  Identities=21%  Similarity=0.185  Sum_probs=17.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy13481        186 FRGRAYRLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      .+|..+...|++++|..+|-+|+.+.|.
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q   49 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ   49 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            3566666666666666666666666665

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=82.05  E-value=13  Score=31.29  Aligned_cols=60  Identities=13%  Similarity=0.109  Sum_probs=49.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy13481        151 AKRGQSYLQLSKPNACIRDCSVALKINPD--S----AAAYKFRGRAYRLLGKWEEAAVDLRNACKI  210 (231)
Q Consensus       151 ~~la~~~~~~~~~~~Ai~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  210 (231)
                      .++|..|+..|+|.+|+..+.+.+.--..  +    ..++..-..+|..+|++..+...|.+|...
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            37899999999999999999888764321  1    346777888999999999999999998654

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=81.80  E-value=2.8  Score=27.50  Aligned_cols=28  Identities=25%  Similarity=0.421  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEA  139 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~a  139 (231)
                      .+-.+-.+|..+...|+|++||++..++
T Consensus        14 ~AH~~~RrAe~ll~~gkydeAIech~kA   41 (97)
T 2crb_A           14 LAHQQSRRADRLLAAGKYEEAISCHRKA   41 (97)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence            3555556666666666666666665554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=81.71  E-value=9  Score=27.50  Aligned_cols=53  Identities=26%  Similarity=0.139  Sum_probs=26.0

Q ss_pred             HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        159 QLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       159 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                      ..|+-++--..+...+.-++-++..+..+|.+|...|+..+|-..+.+|.+-.
T Consensus       103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A          103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            44444443333333333344455555566666666666666666555555543

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=80.79  E-value=4.4  Score=26.21  Aligned_cols=32  Identities=19%  Similarity=0.385  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL  142 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~  142 (231)
                      ..+..+...|...-..|+|++|+.+|..+++.
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34666777888888888888888888887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	231
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-12
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-12
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-09
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.001
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-09
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	3e-08
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-07
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-07
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	9e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-04
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	4e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	6e-06
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	3e-05
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	3e-05
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	3e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 2e-12
 Identities = 17/73 (23%), Positives = 28/73 (38%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           A   Y  G FE A     +  +  P +  +       + Q  + +      ++A+K NP 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 180 SAAAYKFRGRAYR 192
            A AY   G  Y+
Sbjct: 66  LAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 8e-12
 Identities = 18/76 (23%), Positives = 31/76 (40%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           A      G  E+AV  Y +A+++ P  A  ++       Q  K    +     A++I+P 
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 180 SAAAYKFRGRAYRLLG 195
            A AY   G   + + 
Sbjct: 372 FADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 5e-11
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKR 153
            I+++ +   ++ E +     AY +        G   +A + Y+ A++L P+ A      
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

Query: 154 GQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
                +       +R    AL++ P+ AAA+       +  GK +EA +  + A +I 
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 7e-11
 Identities = 21/92 (22%), Positives = 33/92 (35%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           A   Y  G  + A++ Y  AI+L P     Y     +  +           + AL++ P 
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
            A +        R  G  EEA    R A ++ 
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 6e-10
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 108 EDIDKSNEKKREAIHAYND--------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ 159
              +K+       + AY +          F+ AV AY  A+ L+P+ A+++      Y +
Sbjct: 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249

Query: 160 LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNAC 208
               +  I     A+++ P    AY     A +  G   EA      A 
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 7e-07
 Identities = 9/60 (15%), Positives = 17/60 (28%)

Query: 152 KRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           +      Q     A  R C    +  PD+          +    + + +A     A K +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 4e-06
 Identities = 14/77 (18%), Positives = 30/77 (38%)

Query: 136 YSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG 195
           Y +AI+  P+ A+ ++  G  +    +    I     A+ ++P+   AY   G   +   
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217

Query: 196 KWEEAAVDLRNACKIDF 212
            ++ A      A  +  
Sbjct: 218 IFDRAVAAYLRALSLSP 234

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 27/103 (26%), Positives = 51/103 (49%)

Query: 113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSV 172
           + E K +    +   K+ +A   Y  AI  NP  A+ Y  R   YL++ +P   + DC  
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
           AL+++  S  A+ F G+    +  ++EA  +L+ A  +  +++
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.0 bits (150), Expect = 3e-12
 Identities = 15/98 (15%), Positives = 35/98 (35%)

Query: 122 HAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA 181
           +A ++G+ + A+    EAIK +P  A L +   +                 ++K+ P+  
Sbjct: 5   NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 64

Query: 182 AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
                     +     ++ A     A  +  +E+  + 
Sbjct: 65  PGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKS 102

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 10/59 (16%), Positives = 22/59 (37%)

Query: 153 RGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
           + ++ L   +    +     A+K +P  A+          + G +E A   L  + K+ 
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 4e-09
 Identities = 11/97 (11%), Positives = 22/97 (22%), Gaps = 4/97 (4%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
            I +         V   S +        L++   G      ++ +        A ++ P 
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQHCLVH--LGDIARYRNQTSQAESYYRHAAQLVPS 184

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNA--CKIDFDE 214
           +   Y          G           +   K  F  
Sbjct: 185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA 221

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 9/87 (10%), Positives = 27/87 (31%), Gaps = 2/87 (2%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
           G +   +        ++    +  ++ G    + +  +A ++  S +             
Sbjct: 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVH 157

Query: 187 RGRAYRLLGKWEEAAVDLRNACKIDFD 213
            G   R   +  +A    R+A ++   
Sbjct: 158 LGDIARYRNQTSQAESYYRHAAQLVPS 184

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 8/95 (8%), Positives = 22/95 (23%), Gaps = 5/95 (5%)

Query: 132 AVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY 191
           +     +A  L            + +          +     L  + + A   K     +
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQK---MLVTDLEYALDKKVEQDLW 61

Query: 192 RLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
                ++     L+   K   +    E    ++  
Sbjct: 62  NHA--FKNQITTLQGQAKNRANPNRSEVQANLSLF 94

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 9/111 (8%), Positives = 26/111 (23%), Gaps = 5/111 (4%)

Query: 107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS---SALLYAKRGQSYLQLSKP 163
             D++ + +KK E     +   F++ +       K   +   S +               
Sbjct: 45  VTDLEYALDKKVEQDLWNH--AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFY 102

Query: 164 NACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214
              +++      ++          G                 ++C      
Sbjct: 103 TQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH 153

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 11/66 (16%), Positives = 20/66 (30%)

Query: 127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF 186
            +   A + Y  A +L PS+   Y +              I     ++ +     AA   
Sbjct: 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN 225

Query: 187 RGRAYR 192
             +A  
Sbjct: 226 LQKALS 231

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 7e-09
 Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCS 171
           ++ ++K     AY    F+ A+  Y +A +L+P++      +   Y +    N C   C 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 172 VALKINPDSAAAYKF-------RGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEV 223
            A+++  ++   Y+         G +Y    K+++A      +          +  ++ 
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-08
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDC 170
           ++ NE K +   A + G  +DA+  YSEAIKL+P + +LY+ R  +Y +         D 
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKEV 223
              + + PD    Y  +  A   L ++EEA        K +  + Q  E L+ +
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 3e-08
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNA 165
           ++  + ++ E K +A   +    +E+A+  YS+AI+LNPS+A+ Y  R  +YL+      
Sbjct: 3   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGY 62

Query: 166 CIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID-FDEQADEWLKEV 223
            + D + A++++      Y  R  +   LGK+  A  D     K+   D+ A    +E 
Sbjct: 63  ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 121

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 1/121 (0%)

Query: 103 IEVSEEDIDKSNEKK-REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS 161
            +  EE+  + + +   E +    +G   +AV  +  A++ +P     +   G +  +  
Sbjct: 8   YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 67

Query: 162 KPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLK 221
           +    I      L++ PD+  A      ++       +A   LR+  +            
Sbjct: 68  QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 127

Query: 222 E 222
           E
Sbjct: 128 E 128

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
               N  + E+AV AY  A++L P         G S + L      +     AL +   S
Sbjct: 214 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273

Query: 181 AAA-----------YKFRGRAYRLLGKWEEA-AVDLRN 206
                         +     A  +LG+ +   A D R+
Sbjct: 274 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 311

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 15/121 (12%)

Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL---------------NPSSALLY 150
           ++E ++++   K +    +  GK+  AV  Y + +                        +
Sbjct: 8   TKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 67

Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
                 YL+L +    +  C  AL ++  +      RG A  L+ ++E A  D     ++
Sbjct: 68  LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127

Query: 211 D 211
           +
Sbjct: 128 N 128

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 48.8 bits (114), Expect = 2e-07
 Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 5/94 (5%)

Query: 138 EAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-----AAAYKFRGRAYR 192
           + I+ +   A   A R Q  +    P+   R   +AL+  P         A    G    
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 193 LLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPN 226
             G+   +   ++   ++        +       
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 13/121 (10%), Positives = 26/121 (21%), Gaps = 10/121 (8%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAK----RGQSYLQLSKPNACIRDCSVALK 175
            I+    G    A N      K   ++            ++ + L +            +
Sbjct: 220 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 279

Query: 176 IN------PDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN 229
                    D         + Y   G+  +A   L +A K+                   
Sbjct: 280 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 339

Query: 230 L 230
            
Sbjct: 340 Q 340

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.7 bits (112), Expect = 4e-07
 Identities = 9/114 (7%), Positives = 20/114 (17%), Gaps = 4/114 (3%)

Query: 102 DIEVSEEDIDKSNEKKREAIHAYND----GKFEDAVNAYSEAIKLNPSSALLYAKRGQSY 157
               S            + +    +       + +   Y   +              +  
Sbjct: 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKS 252

Query: 158 LQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKID 211
             L       ++       N           RA   L   +E          +D
Sbjct: 253 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 46.3 bits (108), Expect = 9e-07
 Identities = 16/106 (15%), Positives = 37/106 (34%)

Query: 91  DEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLY 150
           DE++    +    E S+++    N  +    +       E      ++   L    +   
Sbjct: 153 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 212

Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK 196
              G+ YL L   ++      +A+  N  +   +++      LLG+
Sbjct: 213 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 4/104 (3%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIK----LNPSSALLYAKRGQSYLQLSKPNACIRDCSVALK 175
           A+      + E  +    + +      +   A L  +RG  Y  L        D S AL 
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65

Query: 176 INPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEW 219
           I PD    + + G      G ++ A     +  ++D        
Sbjct: 66  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 109

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 9/95 (9%), Positives = 28/95 (29%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPD 179
           A    ++ + ++ +  + E          +      +  + +       D +    +   
Sbjct: 148 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 207

Query: 180 SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE 214
            +    + G+ Y  LG  + A    + A   +   
Sbjct: 208 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 119 EAIHAYNDGKFEDAVNAYSEAI----KLNPSSALLYAKRGQSYLQLSKPNACIRDCSVAL 174
           EAI  +N+G        +  A+     +    + +    G  Y  L       +  + ++
Sbjct: 4   EAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI 63

Query: 175 KINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKLN 229
             +   A AY  RG  Y    K++ A  DL+ A       Q  ++       KL 
Sbjct: 64  NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 118

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 18/95 (18%)

Query: 121 IHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS 180
           +  Y   K++ A+    EA+                       N  I    + L+    +
Sbjct: 78  MLYYQTEKYDLAIKDLKEALIQLR------------------GNQLIDYKILGLQFKLFA 119

Query: 181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ 215
                     Y    +W++A   L  A  +  + +
Sbjct: 120 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 43.1 bits (100), Expect = 4e-06
 Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 16/140 (11%)

Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSE----------------AIKLNPSSALL 149
            EE +  + + K E    +   +  +A+  Y E                  K        
Sbjct: 10  DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 69

Query: 150 YAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACK 209
                  Y +       I   S  LKI+ ++  A    G A    G  EEA  +L  A  
Sbjct: 70  NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129

Query: 210 IDFDEQADEWLKEVTPNKLN 229
           ++ +        E+  NKL 
Sbjct: 130 LNPNNLDIRNSYELCVNKLK 149

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 17/138 (12%)

Query: 91  DEEEPIP-DVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEA---------- 139
           D     P D   D++  ++ +  S + K      +    +E A+  Y++           
Sbjct: 4   DSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAA 63

Query: 140 ------IKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193
                  KL P +       G   L++S     +  C  AL+I+P +  A   R + ++ 
Sbjct: 64  AEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG 123

Query: 194 LGKWEEAAVDLRNACKID 211
           L ++++A  DL+ A +I 
Sbjct: 124 LKEYDQALADLKKAQEIA 141

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 1/92 (1%)

Query: 139 AIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGK-W 197
            I  +     +Y        +  +     +    A+++N  +   + FR    + L K  
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 198 EEAAVDLRNACKIDFDEQADEWLKEVTPNKLN 229
            E    +    +           + V    L 
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR 126

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 4/126 (3%)

Query: 89  EPDEEEPIPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL 148
           +P  +   P+    I  S++  D  +   R  +    D + E A     +AI+LN ++  
Sbjct: 22  DPVPQNDGPNPVVQIIYSDKFRDVYD-YFRAVLQR--DERSERAFKLTRDAIELNAANYT 78

Query: 149 LYAKRGQSYLQLSK-PNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA 207
           ++  R      L K  +  +   +  ++  P +   +  R      L    +    + + 
Sbjct: 79  VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 138

Query: 208 CKIDFD 213
              D  
Sbjct: 139 LNQDAK 144

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 16/134 (11%)

Query: 106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEA---------------IKLNPSSALLY 150
           SEE +++S   K      + +GK++ A+  Y +                 K        +
Sbjct: 6   SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 65

Query: 151 AKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKI 210
                 +L+L   +A I  C+ AL+++ ++      RG A+  +  +E A  D +   ++
Sbjct: 66  LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125

Query: 211 D-FDEQADEWLKEV 223
              ++ A   L   
Sbjct: 126 YPNNKAAKTQLAVC 139

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 3e-05
 Identities = 8/84 (9%), Positives = 23/84 (27%), Gaps = 7/84 (8%)

Query: 120 AIHAYNDGKFEDAVNAYSEAIKL-------NPSSALLYAKRGQSYLQLSKPNACIRDCSV 172
              AY +  +        +A++              +      +  Q    +  +     
Sbjct: 12  GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71

Query: 173 ALKINPDSAAAYKFRGRAYRLLGK 196
            L+++P+   A         ++ K
Sbjct: 72  LLELDPEHQRANGNLKYFEYIMAK 95

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 23/141 (16%), Positives = 42/141 (29%), Gaps = 29/141 (20%)

Query: 96  IPDVATDIEVSEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSAL------- 148
           IPD   D+     +       K   +HA   G+FE A    S A++      L       
Sbjct: 1   IPDNTCDLGRFVAE-------KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQ 53

Query: 149 ---------------LYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL 193
                           +  + ++ +   + +A I +       +P     +     AY L
Sbjct: 54  FVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYL 113

Query: 194 LGKWEEAAVDLRNACKIDFDE 214
             +  +A    R       D+
Sbjct: 114 SDRQSDALGAYRRVKTTLADD 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.86
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.83
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.82
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.79
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.78
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.76
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.75
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.74
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.69
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.67
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.64
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.63
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.63
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.61
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.59
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.52
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.51
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.5
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.47
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.46
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.41
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.41
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.39
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.32
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.28
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.25
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.16
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.11
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.02
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.02
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.01
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.95
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.92
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.85
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.77
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.74
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.71
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.62
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.54
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.48
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.43
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.38
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.34
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.2
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.19
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.5
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.89
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	87.94
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	87.09
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	86.97
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	83.75
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	82.95

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.1e-21  Score=137.27  Aligned_cols=112  Identities=28%  Similarity=0.448  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..++..|+.++..|+|++|+..|+++|..+|+++.+|.++|.+|..+|+|.+|+..|++++.++|+++.+|+++|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      .+|++++|+..|+++++++|++. +...+..+.
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999999999865 666665554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-20  Score=138.98  Aligned_cols=118  Identities=25%  Similarity=0.420  Sum_probs=109.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        106 SEEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       106 ~~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      +....+.+..+...|+.+++.|+|++|+..|+++++++|+++.+|+++|.+++.+|++.+|+.+|+++++++|.+..+|+
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~   82 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY   82 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        186 FRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      ++|.++..+|++++|+.+|++++.++|++. +...+.++
T Consensus        83 ~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          83 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            999999999999999999999999999865 44444444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=3.5e-20  Score=141.56  Aligned_cols=101  Identities=27%  Similarity=0.481  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..+...|+.++..|+|++|+..|+++|.++|+++.+|+++|.+|.++|+|++|+.+|++|++++|+++.+|+++|.+|.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCC
Q psy13481        193 LLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~  213 (231)
                      .+|++++|+..|++++.++|+
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999999875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.82  E-value=2.9e-19  Score=131.94  Aligned_cols=124  Identities=19%  Similarity=0.186  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCChHHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----------------ALLYAKRGQSYLQLSKPNACIRDC  170 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----------------~~~~~~la~~~~~~~~~~~Ai~~~  170 (231)
                      ++..+.+..++..|+.++..|+|.+|+..|++++...+..                ..++.++|.+|+++|+|.+|+.+|
T Consensus        11 ~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~   90 (153)
T d2fbna1          11 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA   90 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhh
Confidence            4556778899999999999999999999999999876543                347889999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhcc
Q psy13481        171 SVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLNL  230 (231)
Q Consensus       171 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k~  230 (231)
                      +++|.++|.+..+|+++|.++..+|++++|+.+|+++++++|++. +...+..+..++++.
T Consensus        91 ~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          91 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             hccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999865 777777777766553

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.7e-18  Score=128.87  Aligned_cols=119  Identities=18%  Similarity=0.272  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---------------ALLYAKRGQSYLQLSKPNACIRDCSV  172 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~Ai~~~~~  172 (231)
                      +....+..+...|+.++..|+|++|+..|+++|...|..               ..+|.++|.||+++|+|.+|+.++++
T Consensus         8 ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~   87 (170)
T d1p5qa1           8 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK   87 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhh
Confidence            446678888999999999999999999999999997754               46788999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481        173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN  226 (231)
Q Consensus       173 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~  226 (231)
                      +|.++|+++.+|+.+|.+|..+|+|++|+.+|+++++++|++. +...+..+...
T Consensus        88 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          88 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             hhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999754 55556555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.8e-18  Score=123.83  Aligned_cols=117  Identities=17%  Similarity=0.260  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-------HHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSA-------AAY  184 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~-------~~~  184 (231)
                      .+..+..+|+.++..|+|++|+.+|+++|.++|++..+++++|.+|.++|+|.+|+.+|+++++++|.+.       .+|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4678889999999999999999999999999999999999999999999999999999999999998774       477


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhhh
Q psy13481        185 KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNKL  228 (231)
Q Consensus       185 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~~  228 (231)
                      +.+|.++..++++++|+.+|.+++..+++......+.++...++
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~~~k~lk  126 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence            78888999999999999999999999998877777777655543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.78  E-value=6.8e-18  Score=126.31  Aligned_cols=121  Identities=17%  Similarity=0.278  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS---------------ALLYAKRGQSYLQLSKPNACIRDCS  171 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~Ai~~~~  171 (231)
                      .+....+..+...|+.++..|+|.+|+..|++++...+..               ..++.++|.||+++|+|.+|+.+|+
T Consensus         9 ~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~   88 (168)
T d1kt1a1           9 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD   88 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhh
Confidence            4566788999999999999999999999999999864432               4578899999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481        172 VALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       172 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~  227 (231)
                      +++.++|.+..+|+++|.++..+|+|++|+.+|.+++.++|++. +...+..+...+
T Consensus        89 ~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          89 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999864 555555554443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=5.5e-18  Score=126.80  Aligned_cols=121  Identities=20%  Similarity=0.301  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL----------------NPSSALLYAKRGQSYLQLSKPNACIRDCSV  172 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~  172 (231)
                      ....+..+...|..++..|+|.+|+..|+++|..                +|....++.++|.++.++|+|.+|+..|++
T Consensus        23 ~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  102 (169)
T d1ihga1          23 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  102 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhh
Confidence            3455677889999999999999999999999864                556678899999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481        173 ALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLN  229 (231)
Q Consensus       173 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k  229 (231)
                      +|+++|.++.+|+++|.+|..+|++++|+..|+++++++|++. +...+..+..++++
T Consensus       103 al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~  160 (169)
T d1ihga1         103 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA  160 (169)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999865 66677777665543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.1e-17  Score=131.99  Aligned_cols=107  Identities=20%  Similarity=0.145  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      ++..+..++.+|.+++..|++++|+..|++++.++|+++.+|+++|.++..+|++++|+..|++++.++|+++.+++++|
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .++..+|++++|+..|+++++++|++.
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~~~  139 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPNDP  139 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccH
Confidence            999999999999999999999999754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.75  E-value=1.3e-17  Score=116.49  Aligned_cols=94  Identities=14%  Similarity=0.085  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy13481        115 EKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLL  194 (231)
Q Consensus       115 ~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~  194 (231)
                      ..+..|..+++.|++.+|+..|++++..+|+++.+|..+|.++.++|++.+|+.+|+++++++|.+..+|+.+|.+|..+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            34778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy13481        195 GKWEEAAVDLRNAC  208 (231)
Q Consensus       195 g~~~~A~~~~~~al  208 (231)
                      |++++|++.|++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999876

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.2e-18  Score=120.45  Aligned_cols=112  Identities=8%  Similarity=-0.056  Sum_probs=99.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHH
Q psy13481        118 REAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS---KPNACIRDCSVALKINPDS--AAAYKFRGRAYR  192 (231)
Q Consensus       118 ~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~Ai~~~~~al~~~p~~--~~~~~~lg~~~~  192 (231)
                      .+++.+...+++++|.+.|++++.++|+++.+++++|.++++.+   ++.+|+..|++++..+|.+  ..+|+++|.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            46778889999999999999999999999999999999998755   4567999999999998765  458999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLN  229 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k  229 (231)
                      .+|++++|+.+|+++++++|++. +......|.++++|
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            99999999999999999999865 77777778777664

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.4e-16  Score=120.29  Aligned_cols=99  Identities=19%  Similarity=0.206  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      .+..++..|..++..|+|++|++.|.+   +.|.++.+|+++|.+|..+|+|++|+.+|++||+++|+++.+|+++|.+|
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            356778899999999999999999986   45668899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCC
Q psy13481        192 RLLGKWEEAAVDLRNACKIDFD  213 (231)
Q Consensus       192 ~~~g~~~~A~~~~~~al~l~p~  213 (231)
                      ..+|++++|+.+|++|+...+.
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~  102 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRG  102 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTT
T ss_pred             HhhccHHHHHHHHHHHHHhCcc
Confidence            9999999999999999987654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-15  Score=115.68  Aligned_cols=102  Identities=20%  Similarity=0.161  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------------
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS------------  180 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~------------  180 (231)
                      +..++.+|.+++..|+|++|+..|+++|+++|+++.+|+++|.++.++|+|.+|+.+|++++...+.+            
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~  115 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  115 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhc
Confidence            45789999999999999999999999999999999999999999999999999999999999876543            


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        181 ----AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       181 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                          ..+++++|.++..+|++++|...|.+|+.+.|+.
T Consensus       116 ~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                4688999999999999999999999999998873

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-15  Score=123.94  Aligned_cols=103  Identities=17%  Similarity=0.267  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +..+..+|..+...|++++|+..|++++..+|+++.+|+++|.++..+|++++|+..|+++++++|+++.+|+++|.+|.
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  251 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  251 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        193 LLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .+|++++|+..|++|++++|++.
T Consensus       252 ~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         252 NLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             HCCCHHHHHHHHHHHHHhCCcCh
Confidence            99999999999999999998753

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.6e-16  Score=126.20  Aligned_cols=117  Identities=12%  Similarity=0.073  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDG-KFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      .-+|....+|+.+|.++...| ++++|+..|++++..+|++..+|+++|.++..+|++.+|+..++++++++|++..+|+
T Consensus        71 ~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~  150 (315)
T d2h6fa1          71 ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ  150 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHH
Confidence            345666777777777777765 4777888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhh
Q psy13481        186 FRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEV  223 (231)
Q Consensus       186 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~  223 (231)
                      ++|.++..+|++++|+.+|.++++++|.+. ++..+..+
T Consensus       151 ~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~  189 (315)
T d2h6fa1         151 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV  189 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence            888888888888888888888888887643 44433333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.1e-15  Score=123.50  Aligned_cols=119  Identities=13%  Similarity=0.021  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK-PNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      ++-+.++..+|.++.+.+.+++|+..|+++|+++|++..+|++||.++..+|+ +++|+.++++++.++|++..+|+++|
T Consensus        40 p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~  119 (315)
T d2h6fa1          40 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHh
Confidence            45577888889999999999999999999999999999999999999999875 99999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKL  228 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~  228 (231)
                      .++..+|++++|+..|.++++++|++. ++..+..+...++
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~  160 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK  160 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999854 5555555554443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=5.3e-16  Score=113.18  Aligned_cols=100  Identities=22%  Similarity=0.148  Sum_probs=87.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        123 AYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQL----------SKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       123 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~----------~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      +-+.+.|++|+..|+++++++|+++.+++++|.++..+          +.+++|+..|+++++++|+++.+|+++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            34557799999999999999999999999999999865          44588999999999999999999999999998


Q ss_pred             HcCC-----------HHHHHHHHHHHHhcCCCHH-HHHHHHh
Q psy13481        193 LLGK-----------WEEAAVDLRNACKIDFDEQ-ADEWLKE  222 (231)
Q Consensus       193 ~~g~-----------~~~A~~~~~~al~l~p~~~-~~~~l~~  222 (231)
                      .+|+           |++|+.+|++++.++|++. +...+..
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~  128 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  128 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHH
Confidence            8764           7999999999999999876 4443433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.61  E-value=2.2e-15  Score=110.98  Aligned_cols=120  Identities=13%  Similarity=0.126  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------------ALLYAKRGQSYLQLSKPNACIRDCSVALKIN  177 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~  177 (231)
                      ...+..+...|..++..|+|++|+..|+++|+++|+.            +.+|.++|.+|..+|+|.+|+.++++++.+.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            3445566677999999999999999999999998764            4689999999999999999999999999875


Q ss_pred             CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----HHHHHHHHhhchhhhc
Q psy13481        178 PD-----------SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFD-----EQADEWLKEVTPNKLN  229 (231)
Q Consensus       178 p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~l~~~~~~~~k  229 (231)
                      |.           ...+++++|.+|..+|++++|+..|++++++.|.     .....+++.+...+.+
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~  153 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  153 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHH
Confidence            42           2447899999999999999999999999999663     2245555555554443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.4e-15  Score=121.62  Aligned_cols=117  Identities=19%  Similarity=0.152  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRA  190 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~  190 (231)
                      +....+..+|..+...|++.+|+..|+.++...|.+...+..+|.++...|++++|+..|+++++++|+++.+++++|.+
T Consensus       269 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  348 (388)
T d1w3ba_         269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV  348 (388)
T ss_dssp             SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            33566777788888888888888888888888888888888888888888899999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhh
Q psy13481        191 YRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNK  227 (231)
Q Consensus       191 ~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~  227 (231)
                      +..+|++++|+..|+++++++|++. +...+..+..++
T Consensus       349 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999754 666666655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.8e-14  Score=116.86  Aligned_cols=99  Identities=15%  Similarity=0.169  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy13481        116 KKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLG  195 (231)
Q Consensus       116 ~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g  195 (231)
                      .+.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++.+|+..|.++++++|.+..+|..+|.++..+|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCH
Q psy13481        196 KWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       196 ~~~~A~~~~~~al~l~p~~  214 (231)
                      ++++|+..+.+++.++|+.
T Consensus       102 ~~~~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAY  120 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTT
T ss_pred             cccccccchhhHHHhccch
Confidence            9999999999999999863

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.7e-14  Score=94.71  Aligned_cols=83  Identities=8%  Similarity=0.040  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-------ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYK  185 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~  185 (231)
                      +..++.+|..+++.|+|.+|+..|++|+++.|.+       +.++.++|.++.++|+|++|+..++++|+++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            5678899999999999999999999999985543       788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q psy13481        186 FRGRAYRLLG  195 (231)
Q Consensus       186 ~lg~~~~~~g  195 (231)
                      +++.+...++
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9988776543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.6e-13  Score=110.83  Aligned_cols=119  Identities=20%  Similarity=0.172  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      +.....+..+|..+...|++++|+..|+++++++|+++.+|.++|.++...|++.+|+..+++++...|.+..++..+|.
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  313 (388)
T d1w3ba_         234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN  313 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHH
Confidence            33466778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhh
Q psy13481        190 AYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKL  228 (231)
Q Consensus       190 ~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~  228 (231)
                      ++...|++++|+..|+++++++|++. +...+..+....+
T Consensus       314 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  353 (388)
T d1w3ba_         314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999854 5555555555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=9.8e-14  Score=108.90  Aligned_cols=107  Identities=17%  Similarity=0.215  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH-----
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA-----  182 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~-----  182 (231)
                      -+++.+.+++.+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++.+|+..|+++++++|.+..     
T Consensus        66 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  145 (259)
T d1xnfa_          66 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL  145 (259)
T ss_dssp             HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHH
Confidence            344557889999999999999999999999999999999999999999999999999999999999999887332     


Q ss_pred             -----------------------------------------------------------------HHHHHHHHHHHcCCH
Q psy13481        183 -----------------------------------------------------------------AYKFRGRAYRLLGKW  197 (231)
Q Consensus       183 -----------------------------------------------------------------~~~~lg~~~~~~g~~  197 (231)
                                                                                       +|+++|.++..+|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  225 (259)
T d1xnfa_         146 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL  225 (259)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCH
Confidence                                                                             355689999999999


Q ss_pred             HHHHHHHHHHHhcCCCH
Q psy13481        198 EEAAVDLRNACKIDFDE  214 (231)
Q Consensus       198 ~~A~~~~~~al~l~p~~  214 (231)
                      ++|+..|++++..+|++
T Consensus       226 ~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         226 DSATALFKLAVANNVHN  242 (259)
T ss_dssp             HHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            99999999999999985

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=3.4e-13  Score=100.15  Aligned_cols=93  Identities=15%  Similarity=0.154  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      .+..+..+..+|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++
T Consensus        73 ~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1          73 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHH
Q psy13481        189 RAYRLLGKWEEAA  201 (231)
Q Consensus       189 ~~~~~~g~~~~A~  201 (231)
                      .+...+....++.
T Consensus       153 ~~~~~l~~~~~~~  165 (169)
T d1ihga1         153 KVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9988777665554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.46  E-value=2.1e-12  Score=97.03  Aligned_cols=116  Identities=18%  Similarity=0.198  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----------------------ALLYAKRGQSYLQLSKPNAC  166 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A  166 (231)
                      +......+...|..+...|++++|+..|.+|+.+.+..                      ..++.++|.++..+|+|.+|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            55668899999999999999999999999999997643                      25788999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhcCCCHHHHHHHHhhc
Q psy13481        167 IRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNA-------CKIDFDEQADEWLKEVT  224 (231)
Q Consensus       167 i~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-------l~l~p~~~~~~~l~~~~  224 (231)
                      +.++++++.++|.+..+|..++.++..+|++.+|+..|+++       +-+.|..........+.
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il  151 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL  151 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998       56788876666555543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5e-13  Score=93.37  Aligned_cols=86  Identities=12%  Similarity=0.098  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      ..++..+..+..+|.++...|++++|+..|++++.++|+++.+|+++|.++..+|+|++|+.+|+++++++|+++.++..
T Consensus        31 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  110 (117)
T d1elwa_          31 KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG  110 (117)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             hcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            44566688999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy13481        187 RGRAYR  192 (231)
Q Consensus       187 lg~~~~  192 (231)
                      ++.+..
T Consensus       111 l~~l~~  116 (117)
T d1elwa_         111 LQNMEA  116 (117)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            988753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-12  Score=96.19  Aligned_cols=96  Identities=19%  Similarity=0.216  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKF  186 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~  186 (231)
                      .-++..+..|..+|.+++..|++++|+..|+++++++|++..+|+++|.++..+|+|.+|+.+|++++.++|++..++..
T Consensus        38 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~  117 (159)
T d1a17a_          38 ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK  117 (159)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHc--CCHHHHHH
Q psy13481        187 RGRAYRLL--GKWEEAAV  202 (231)
Q Consensus       187 lg~~~~~~--g~~~~A~~  202 (231)
                      ++.+....  +.+++|+.
T Consensus       118 l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_         118 YQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            88776443  33555543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.5e-12  Score=95.66  Aligned_cols=90  Identities=14%  Similarity=0.179  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ....+..+|.++++.|+|++|+..++++|.++|+++.+|+++|.+|+.+|+|++|+.+|++++.++|+|..+...++.+.
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHcCCHHHHH
Q psy13481        192 RLLGKWEEAA  201 (231)
Q Consensus       192 ~~~g~~~~A~  201 (231)
                      ...++.....
T Consensus       141 ~~~~~~~~~e  150 (170)
T d1p5qa1         141 QRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887766554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.41  E-value=4e-12  Score=94.26  Aligned_cols=97  Identities=16%  Similarity=0.107  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGR  189 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~  189 (231)
                      ...+..+.++|.+++..|+|.+|+..+++++.++|++..+|+++|.+|..+|+|.+|+.+|++++.++|++..++..++.
T Consensus        61 ~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          61 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             hhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            33456777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHH-HHHHHHH
Q psy13481        190 AYRLLGKWEE-AAVDLRN  206 (231)
Q Consensus       190 ~~~~~g~~~~-A~~~~~~  206 (231)
                      +....+.+.+ ..+.|.+
T Consensus       141 ~~~~~~~~~e~~kk~~~~  158 (168)
T d1kt1a1         141 CQKKAKEHNERDRRTYAN  158 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHH
Confidence            9887776654 3344333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.39  E-value=2.6e-12  Score=93.88  Aligned_cols=84  Identities=12%  Similarity=0.088  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        112 KSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       112 ~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      .+..+..+|.+++..|+|++|+..|+++|.++|++..+|+++|.++..+|+|.+|+.+|++++.++|+|..+...++.+.
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHcC
Q psy13481        192 RLLG  195 (231)
Q Consensus       192 ~~~g  195 (231)
                      ..++
T Consensus       146 ~kl~  149 (153)
T d2fbna1         146 NKLK  149 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.4e-12  Score=87.71  Aligned_cols=82  Identities=15%  Similarity=0.005  Sum_probs=70.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HH
Q psy13481        146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS-------AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-AD  217 (231)
Q Consensus       146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~  217 (231)
                      +++-++.+|.++++.|+|.+|+.+|++|+.+.|.+       ..++.++|.++..+|++++|+..|+++++++|++. +.
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            35678899999999999999999999999987653       67899999999999999999999999999999865 66


Q ss_pred             HHHHhhchhh
Q psy13481        218 EWLKEVTPNK  227 (231)
Q Consensus       218 ~~l~~~~~~~  227 (231)
                      ..+..+...+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6665555444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=6.9e-12  Score=94.51  Aligned_cols=84  Identities=23%  Similarity=0.158  Sum_probs=75.0

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhc
Q psy13481        146 SALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVT  224 (231)
Q Consensus       146 ~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~  224 (231)
                      ++..+...|..+++.|+|++|+..|+++|.++|.++.+|+++|.||..+|+|++|+.+|.+|+.++|++. ++..+..+.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            5667889999999999999999999999999999999999999999999999999999999999999854 666666666


Q ss_pred             hhhhc
Q psy13481        225 PNKLN  229 (231)
Q Consensus       225 ~~~~k  229 (231)
                      ..+++
T Consensus        83 ~~l~~   87 (201)
T d2c2la1          83 LEMES   87 (201)
T ss_dssp             HHTTC
T ss_pred             HHCCC
Confidence            55543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.28  E-value=1.4e-11  Score=85.08  Aligned_cols=80  Identities=18%  Similarity=0.103  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchh
Q psy13481        148 LLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPN  226 (231)
Q Consensus       148 ~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~  226 (231)
                      ..++.+|.++++.|++.+|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|++. ++-.+..+..+
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999854 55555555544


Q ss_pred             h
Q psy13481        227 K  227 (231)
Q Consensus       227 ~  227 (231)
                      .
T Consensus        97 ~   97 (112)
T d1hxia_          97 E   97 (112)
T ss_dssp             H
T ss_pred             C
Confidence            4

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.25  E-value=5.9e-12  Score=91.20  Aligned_cols=95  Identities=14%  Similarity=0.083  Sum_probs=81.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------hH
Q psy13481        106 SEEDIDKSNEKKREAIHAYND----------GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK-----------PN  164 (231)
Q Consensus       106 ~~~~~~~a~~~~~~a~~~~~~----------~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------~~  164 (231)
                      ...+|.++..+..+|.++...          +.+++|+..|+++++++|+++.+|+++|.+|..+|+           |.
T Consensus        24 l~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~  103 (145)
T d1zu2a1          24 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFD  103 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHH
Confidence            345677789999999998744          566899999999999999999999999999988764           79


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy13481        165 ACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEA  200 (231)
Q Consensus       165 ~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A  200 (231)
                      .|+.+|+++++++|++..++..++.+....+.+.++
T Consensus       104 ~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         104 LATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987665555554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1e-11  Score=107.33  Aligned_cols=118  Identities=11%  Similarity=0.029  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        109 DIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       109 ~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      ++.....+...|..+...|++.+|+..+.+++..+|  ..++.++|.++..+|+|++|+.+|++|+.++|+++.+|+++|
T Consensus       116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg  193 (497)
T d1ya0a1         116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLA  193 (497)
T ss_dssp             ---------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHH
T ss_pred             ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            345567778889999999999999999999998876  468889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCH-HHHHHHHhhchhhh
Q psy13481        189 RAYRLLGKWEEAAVDLRNACKIDFDE-QADEWLKEVTPNKL  228 (231)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~l~~~~~~~~  228 (231)
                      .++...|++.+|+.+|.+|+.++|.. .+...+..+..+..
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999998874 36666666555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.8e-11  Score=86.54  Aligned_cols=68  Identities=12%  Similarity=0.163  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        147 ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                      +..+.++|..++..|+|.+|+.+|+++|+++|.+..+++++|.+|..+|+|++|+.+|.+++.++|++
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~   71 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc
Confidence            34567899999999999999999999999999999999999999999999999999999999999864

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.8e-11  Score=84.98  Aligned_cols=87  Identities=7%  Similarity=0.001  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q psy13481        108 EDIDKSNEKKREAIHAYNDG---KFEDAVNAYSEAIKLNPSS--ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAA  182 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~---~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~  182 (231)
                      .++..+..++.+|.+++..+   ++.+|+..|++++..+|+.  ..+|+++|.+|.++|+|++|+.+|+++++++|++..
T Consensus        28 ~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~  107 (122)
T d1nzna_          28 AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  107 (122)
T ss_dssp             HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence            34455788999999998644   5567999999999998765  458999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHc
Q psy13481        183 AYKFRGRAYRLL  194 (231)
Q Consensus       183 ~~~~lg~~~~~~  194 (231)
                      +...++.+...+
T Consensus       108 A~~l~~~I~~~~  119 (122)
T d1nzna_         108 AKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999988876543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=3.6e-10  Score=91.85  Aligned_cols=123  Identities=11%  Similarity=-0.004  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHH
Q psy13481        107 EEDIDKSNEKKREAIHAY----------NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK--PNACIRDCSVAL  174 (231)
Q Consensus       107 ~~~~~~a~~~~~~a~~~~----------~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~Ai~~~~~al  174 (231)
                      ..+|+...+|..++..+.          ..|++.+|+.+|+++++.+|++..+|+.+|.++..+++  +.+|+..+++++
T Consensus        57 ~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al  136 (334)
T d1dcea1          57 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL  136 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             HHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHH
Confidence            344555556655554443          34568999999999999999999999999999998885  789999999999


Q ss_pred             hhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHHhhchhhhc
Q psy13481        175 KINPDSAAAY-KFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLKEVTPNKLN  229 (231)
Q Consensus       175 ~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~~~~~~~~k  229 (231)
                      .++|.+..++ +.+|.++...|.++.|+..+++++.++|++. ++..+..+...+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~  193 (334)
T d1dcea1         137 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  193 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred             hhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            9999999886 5778999999999999999999999999754 66666666655543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=1.3e-09  Score=87.10  Aligned_cols=105  Identities=16%  Similarity=0.071  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCC---
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS------ALLYAKRGQSYLQ-LSKPNACIRDCSVALKINPD---  179 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~-~~~~~~Ai~~~~~al~~~p~---  179 (231)
                      ...+..+...|.++...|++++|+..|++++.+.+..      ..++.++|.++.. .|+|++|+..|++++++.+.   
T Consensus        74 ~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~  153 (290)
T d1qqea_          74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            4456788888999999999999999999998886554      6678888888765 68999999999999877532   


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCH
Q psy13481        180 ---SAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       180 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  214 (231)
                         ...++.++|.++..+|+|++|+..|++++.+.+..
T Consensus       154 ~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence               24568889999999999999999999999887763

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=3.5e-10  Score=90.55  Aligned_cols=103  Identities=11%  Similarity=-0.015  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLN------PSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS---  180 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~---  180 (231)
                      ...+..+...|..+...|+|++|++.|.+++.+.      +..+.+|.++|.+|.++|++++|+..+++++.+.+.+   
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            4446778889999999999999999999999973      2336789999999999999999999999999987655   


Q ss_pred             ---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCC
Q psy13481        181 ---AAAYKFRGRAYRL-LGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       181 ---~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p  212 (231)
                         ..++..+|.+|.. .|++++|+..|++++.+.+
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence               5688899998865 6999999999999998754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.01  E-value=1.7e-09  Score=85.68  Aligned_cols=80  Identities=15%  Similarity=0.098  Sum_probs=67.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy13481        120 AIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEE  199 (231)
Q Consensus       120 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~  199 (231)
                      +..++..|++++|+..|+++|+.+|++..++..+|.++...|++++|+..|+++++++|++..++..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            45678899999999999999999999999999999999999999999999999999999987766655444444443333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=6.4e-09  Score=82.94  Aligned_cols=104  Identities=13%  Similarity=0.021  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-----ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDS--  180 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~--  180 (231)
                      ++.-.+.....+|.+++..|++++|+..|++++...|++     ..++..+|.++..+|++++|+..|++++.+.+..  
T Consensus         7 ~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~   86 (366)
T d1hz4a_           7 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV   86 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            444556777788999999999999999999999999986     4588899999999999999999999999886543  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy13481        181 ----AAAYKFRGRAYRLLGKWEEAAVDLRNACKID  211 (231)
Q Consensus       181 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  211 (231)
                          ..++..++.++...|++..|...+.+++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                3577899999999999999999999998764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=1.9e-08  Score=81.37  Aligned_cols=92  Identities=20%  Similarity=0.206  Sum_probs=82.0

Q ss_pred             HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        124 YNDGK-FEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSK----------PNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       124 ~~~~~-~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+. .++|++++++++.++|++..+|+.++.++..+++          +.+|+.++++++..+|++..+|+.+|.++.
T Consensus        39 ~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~  118 (334)
T d1dcea1          39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (334)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence            34444 5899999999999999999999999888776655          789999999999999999999999999998


Q ss_pred             HcCC--HHHHHHHHHHHHhcCCCHH
Q psy13481        193 LLGK--WEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       193 ~~g~--~~~A~~~~~~al~l~p~~~  215 (231)
                      .+++  +++|+..+.+++.++|.+.
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~~~  143 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADERNF  143 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhccccHHHHHHHHHHHHhhCchhh
Confidence            8875  8999999999999999753

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.1e-08  Score=87.83  Aligned_cols=84  Identities=14%  Similarity=-0.033  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ...+..+|..+...|+|++|+.+|++|+.++|+++.+|+++|.++...|++.+|+.+|.+++..+|.++.++.+++.++.
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HcCC
Q psy13481        193 LLGK  196 (231)
Q Consensus       193 ~~g~  196 (231)
                      ...+
T Consensus       232 ~~~~  235 (497)
T d1ya0a1         232 KALE  235 (497)
T ss_dssp             HHTT
T ss_pred             Hhhh
Confidence            6543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=3.6e-08  Score=68.21  Aligned_cols=81  Identities=6%  Similarity=-0.029  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH-HHHHHH
Q psy13481        147 ALLYAKRGQSYLQLSK---PNACIRDCSVALKINPDSA-AAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ-ADEWLK  221 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~---~~~Ai~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~l~  221 (231)
                      ....++.|-++.+..+   ...+|..++.++..+|.+. .+++++|.+|+.+|+|+.|..++.++++++|++. +....+
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            4566666666665543   3466666666666666553 5666666666666666666666666666666654 444444


Q ss_pred             hhchhh
Q psy13481        222 EVTPNK  227 (231)
Q Consensus       222 ~~~~~~  227 (231)
                      .|..++
T Consensus       115 ~Ie~~~  120 (124)
T d2pqrb1         115 MVEDKI  120 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=2.5e-08  Score=79.36  Aligned_cols=102  Identities=16%  Similarity=0.007  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCC
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS----ALLYAKRGQSYLQLSKPNACIRDCSVALKI------NPDS  180 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~Ai~~~~~al~~------~p~~  180 (231)
                      .....+...|..+...|++++|+..+.+++...+.+    ...+.++|.++...|++.+|+..+++++..      .|..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  290 (366)
T d1hz4a_         211 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL  290 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHH
Confidence            345667778889999999999999999999887654    567888999999999999999999999854      3456


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy13481        181 AAAYKFRGRAYRLLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       181 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  212 (231)
                      ..++..+|.+|..+|++++|+..|++|+++.+
T Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         291 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            67999999999999999999999999999854

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=1.2e-07  Score=65.41  Aligned_cols=80  Identities=8%  Similarity=-0.065  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDG---KFEDAVNAYSEAIKLNPSS-ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       113 a~~~~~~a~~~~~~~---~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      ....|..|..+....   +..+||..|+.+++.+|.. .++++++|.+|+++|+|+.|..+++++|+++|+|..+....-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            467788888887654   5569999999999999976 489999999999999999999999999999999999987766


Q ss_pred             HHHH
Q psy13481        189 RAYR  192 (231)
Q Consensus       189 ~~~~  192 (231)
                      .+..
T Consensus       115 ~Ie~  118 (124)
T d2pqrb1         115 MVED  118 (124)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.62  E-value=5.4e-08  Score=70.40  Aligned_cols=71  Identities=8%  Similarity=-0.019  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPS-----------SALLYAKRGQSYLQLSKPNACIRDCSVALKINP  178 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~-----------~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p  178 (231)
                      ...+..+..+|.++...|+|++|+..+++++.+.|.           ...+++++|.+|..+|++++|+.+|++++++.|
T Consensus        52 ~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          52 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            445678899999999999999999999999987442           245789999999999999999999999999976


Q ss_pred             CC
Q psy13481        179 DS  180 (231)
Q Consensus       179 ~~  180 (231)
                      ..
T Consensus       132 ~~  133 (156)
T d2hr2a1         132 ER  133 (156)
T ss_dssp             HC
T ss_pred             Hh
Confidence            44

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=4.2e-07  Score=72.65  Aligned_cols=99  Identities=8%  Similarity=-0.087  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ-LSKPNACIRDCSVALKINPDSAAAYKFRGRAYR  192 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~  192 (231)
                      ..+...+......|+++.|...|.++++..|.+...|...|..... .|+++.|...|++++..+|.++..|..++..+.
T Consensus       135 ~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~  214 (308)
T d2onda1         135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            3566777777888899999999999999999888888888876544 578888999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCC
Q psy13481        193 LLGKWEEAAVDLRNACKIDF  212 (231)
Q Consensus       193 ~~g~~~~A~~~~~~al~l~p  212 (231)
                      ..|+++.|...|+++++..|
T Consensus       215 ~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         215 HLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             TTCCHHHHHHHHHHHHHSSS
T ss_pred             HcCChHHHHHHHHHHHHhCC
Confidence            99999999999999988765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=6.6e-07  Score=71.43  Aligned_cols=103  Identities=11%  Similarity=-0.135  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSS-ALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAY  191 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~  191 (231)
                      ...+...+......|+++.|...|++++...|.+ ..+|..++....+.|+++.|+..|.+++...|.+...|...|...
T Consensus        99 ~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e  178 (308)
T d2onda1          99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  178 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4567778888899999999999999999999976 457999999999999999999999999999999999999988875


Q ss_pred             -HHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        192 -RLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       192 -~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                       ...|+.+.|...|++++..+|++.
T Consensus       179 ~~~~~~~~~a~~i~e~~l~~~p~~~  203 (308)
T d2onda1         179 YYCSKDKSVAFKIFELGLKKYGDIP  203 (308)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHhccCHHHHHHHHHHHHHhhhhhH
Confidence             456899999999999999999853

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.43  E-value=9e-07  Score=65.47  Aligned_cols=65  Identities=11%  Similarity=0.070  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy13481        110 IDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVAL  174 (231)
Q Consensus       110 ~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al  174 (231)
                      ......+..++..+...|++++|+..+++++..+|.+..+|..++.++..+|++.+|+..|+++.
T Consensus        64 ~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          64 EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            44567888999999999999999999999999999999999999999999999999999999983

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.38  E-value=7e-06  Score=63.48  Aligned_cols=99  Identities=17%  Similarity=0.195  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy13481        113 SNEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAYKFRG  188 (231)
Q Consensus       113 a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~lg  188 (231)
                      +.+++.+|..++..+++.+|+.+|+++.+.  .+..+++++|.+|..    ..++..|+.+++.+....  ++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            468899999999999999999999999876  588999999999998    679999999999988754  888889999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhcCCCHH
Q psy13481        189 RAYRL----LGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       189 ~~~~~----~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .++..    .++.+.|...++.+....+...
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a  108 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEG  108 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhhH
Confidence            98876    5689999999999998876543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.34  E-value=9e-07  Score=69.57  Aligned_cols=61  Identities=16%  Similarity=0.079  Sum_probs=57.5

Q ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCHH
Q psy13481        155 QSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVDLRNACKIDFDEQ  215 (231)
Q Consensus       155 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  215 (231)
                      .-.+..|++++|+..++++++.+|.++.++..+|.++...|+|++|+..|+++++++|++.
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~   64 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   64 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcH
Confidence            3456789999999999999999999999999999999999999999999999999999864

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.20  E-value=1.8e-05  Score=61.08  Aligned_cols=110  Identities=14%  Similarity=0.122  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHH
Q psy13481        113 SNEKKREAIHAYN----DGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAY  184 (231)
Q Consensus       113 a~~~~~~a~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~  184 (231)
                      ...+..+|..+..    ..+...+...++.+.+.  .++.+++++|.+|..    .++++.|+.+|+++.+.  .++.++
T Consensus       142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~  217 (265)
T d1ouva_         142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGC  217 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             cchhhhhhhhhccCCCcccccccchhhhhccccc--cccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHH
Confidence            4566677877775    56788888888888754  578999999999988    67999999999999997  479999


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhcCCCHHHHHHHHhhchhh
Q psy13481        185 KFRGRAYRL----LGKWEEAAVDLRNACKIDFDEQADEWLKEVTPNK  227 (231)
Q Consensus       185 ~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~l~~~~~~~  227 (231)
                      +++|.+|..    ..++++|..+|++|....... +...+.++..++
T Consensus       218 ~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~-A~~~l~~l~~~~  263 (265)
T d1ouva_         218 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG-ACDILKQLKIKV  263 (265)
T ss_dssp             HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH-HHHHHHTCCCCC
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH-HHHHHHHHHHHh
Confidence            999999986    448999999999999998644 677777776654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.19  E-value=4.3e-05  Score=53.00  Aligned_cols=86  Identities=14%  Similarity=0.104  Sum_probs=74.7

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCC
Q psy13481        125 NDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQ----LSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL----LGK  196 (231)
Q Consensus       125 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~----~g~  196 (231)
                      ...++++|+..|+++.+.  .++.+.+.+|.+|..    ..++.+|+.+|+++.+.  .++.+.+.+|.+|..    ..+
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCC
Confidence            346899999999999875  588999999999986    56799999999999986  588999999999987    568


Q ss_pred             HHHHHHHHHHHHhcCCCH
Q psy13481        197 WEEAAVDLRNACKIDFDE  214 (231)
Q Consensus       197 ~~~A~~~~~~al~l~p~~  214 (231)
                      +.+|+.+|++|.++...+
T Consensus       111 ~~~A~~~~~~Aa~~G~~~  128 (133)
T d1klxa_         111 EKQAVKTFEKACRLGSED  128 (133)
T ss_dssp             HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHCCCHH
Confidence            999999999999887543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.50  E-value=0.00041  Score=47.79  Aligned_cols=81  Identities=19%  Similarity=0.194  Sum_probs=67.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q psy13481        127 GKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRL----LGKWEEAAV  202 (231)
Q Consensus       127 ~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~  202 (231)
                      .|+.+|+..|+++.+..  ++.+++++|.  ....++++|+.+++++.+.  .++.+.+.+|.+|..    ..+++.|+.
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHH
Confidence            47899999999998875  5566677764  3456899999999999886  589999999999986    567999999


Q ss_pred             HHHHHHhcCCC
Q psy13481        203 DLRNACKIDFD  213 (231)
Q Consensus       203 ~~~~al~l~p~  213 (231)
                      +|+++.+....
T Consensus        81 ~~~~aa~~g~~   91 (133)
T d1klxa_          81 YYSKACGLNDQ   91 (133)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHhhhhccCcc
Confidence            99999987643

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.89  E-value=1.2  Score=35.94  Aligned_cols=88  Identities=11%  Similarity=-0.017  Sum_probs=60.3

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy13481        124 YNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLSKPNACIRDCSVALKINPDSAAAYKFRGRAYRLLGKWEEAAVD  203 (231)
Q Consensus       124 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  203 (231)
                      +..+..+.|...+........+...... ++...+..+++..+...+...-......+...|.+|.++..+|+.+.|...
T Consensus       263 ~~~~~~~~a~~~~~~~~~~~~~~~~~~w-~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~  341 (450)
T d1qsaa1         263 MGNDVTDEQAKWRDDAIMRSQSTSLIER-RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI  341 (450)
T ss_dssp             CSTTCCHHHHHHHHHHHHTCCCHHHHHH-HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCchHHHHHHHHhhcccccchHHHHH-HHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHH
Confidence            3446667777777666555444333333 333455678998888887654332234577889999999999999999999


Q ss_pred             HHHHHhcCCC
Q psy13481        204 LRNACKIDFD  213 (231)
Q Consensus       204 ~~~al~l~p~  213 (231)
                      |..+.. .++
T Consensus       342 ~~~~a~-~~~  350 (450)
T d1qsaa1         342 LHQLMQ-QRG  350 (450)
T ss_dssp             HHHHHT-SCS
T ss_pred             HHHHhc-CCC
Confidence            998876 344

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.94  E-value=0.6  Score=28.34  Aligned_cols=30  Identities=23%  Similarity=0.411  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy13481        111 DKSNEKKREAIHAYNDGKFEDAVNAYSEAI  140 (231)
Q Consensus       111 ~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al  140 (231)
                      +.|-.+-.+|..+...|+|++||++++.+.
T Consensus         6 N~AH~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334555566777777777777777666554

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.09  E-value=0.72  Score=28.86  Aligned_cols=35  Identities=17%  Similarity=0.362  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL  142 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~  142 (231)
                      .....+..+...|..+-..|+|++|+.+|..++..
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34556778888999999999999999999988764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.97  E-value=0.59  Score=28.37  Aligned_cols=29  Identities=21%  Similarity=0.117  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy13481        147 ALLYAKRGQSYLQLSKPNACIRDCSVALK  175 (231)
Q Consensus       147 ~~~~~~la~~~~~~~~~~~Ai~~~~~al~  175 (231)
                      +..+..+|.-+.+.|+|++||.+.++|..
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45677899999999999999999887654

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.75  E-value=1.2  Score=36.83  Aligned_cols=48  Identities=15%  Similarity=0.198  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy13481        114 NEKKREAIHAYNDGKFEDAVNAYSEAIKLNPSSALLYAKRGQSYLQLS  161 (231)
Q Consensus       114 ~~~~~~a~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~  161 (231)
                      ......|..++..|+|.-|.++.+.++..+|++..+...++.+|.++|
T Consensus       431 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~  478 (505)
T d2cfua2         431 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG  478 (505)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            344455566666666666666666666666666666666666665554

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.95  E-value=0.53  Score=28.34  Aligned_cols=35  Identities=20%  Similarity=0.444  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy13481        108 EDIDKSNEKKREAIHAYNDGKFEDAVNAYSEAIKL  142 (231)
Q Consensus       108 ~~~~~a~~~~~~a~~~~~~~~~~~Ai~~~~~al~~  142 (231)
                      .....+..+...|...=..|+|.+|+.+|..++..
T Consensus         6 ~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~   40 (77)
T d1wr0a1           6 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY   40 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44556777778888888888888888888777654