Psyllid ID: psy13489

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MSPQYLDIMRKKAHLMIRMLEHRIGFELILQLRLPRPVDSVGSGDDYYSSDSPVLWIRLDPEMTIIRSVVIEASDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEILVFAVALRSAK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccccccccHHHHHHHHHcccccccEEEEEEcccccEEEEEEEcccHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccHEEEEEEEcccccccccccccccccccHHHHHHccccccHccEEEEEcccccEEEEEEcccHHHHHHEEcccccHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcHccc
Coil and Loop (DISEMBL)
MSPQYLDIMRKKAHLMIRMLEHRIGFELILQlrlprpvdsvgsgddyyssdspvlwirldpemTIIRSVVIeasdspvlwirldpemtIIRSVVieqpdyqwqyqlrherdVTAQFDAIRAlerfpttttrLALTDTIESERAYVQVRCKAAQALTKVKEILVFAVALRSAK
Flexible Loop (DISEMBL)
MSPQYLDIMRKKAHLMIRMLEHRIGFELILQLRLPRPVDSVGSGDDYYSSDSPVLWIRLDPEMTIIRSVvieasdspvlWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAiralerfpttttrlALTDTIESERAYVQVRCKAAQALTKVKEILVFAVALRSAK
Low Complexity Region (SEG)
MSPQYLDIMRKKAHLMIRMLEHRIGFELILQLRLPRPvdsvgsgddyyssdsPVLWIRLDPEMTIIRSVVIEASDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPttttrlaltdtIESERAYVQVRCKAAQALTKVKEILVFAVALRSAK
Disordered region (IsUnstruct)
*****LDIMRKKAHLMIRMLEHRIGFELILQLRLPRPVDSVGSGDDYYSSDSPVLWIRLDPEMTIIRSVVIEASDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEILVFAVAL****
Disordered Region (DISOPRED)
****Y***MRKKAHLMIRMLEHRIGFELILQLRLPRPVDSVGSGDDYYS*DSPV*WIRLDP**********EASDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEILVFAVALR***
Disordered Region (DISEMBL)
MSPQYLDIMRKKAHLMIRMLEHRIGFELILQLRLPRPVDSVGSGDDYYSSDSPVLWIRLDPEMTIIRSVVIEASDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEILVFAVALRSAK
Disordered Region (DISPRO)
*SPQYLDIMRKKAHLMIRMLEHRIGFELILQLRLPRPVDSVGSGDDYYSSDSPVLWIRLDPEMTIIRSVVIEASDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEILVFAVALRSA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPQYLDIMRKKAHLMIRMLEHRIGFELILQLRLPRPVDSVGSGDDYYSSDSPVLWIRLDPEMTIIRSVVIEASDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEILVFAVALRSAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q24325	1221	Transcription initiation	yes	N/A	0.517	0.072	0.730	5e-35
Q5ZIT8	1168	Transcription initiation	yes	N/A	0.523	0.077	0.544	4e-24
Q6P1X5	1199	Transcription initiation	yes	N/A	0.523	0.075	0.533	6e-24
Q8C176	1104	Transcription initiation	no	N/A	0.523	0.081	0.522	1e-23
Q32PW3	1191	Transcription initiation	yes	N/A	0.523	0.075	0.533	9e-23
P23255	1407	Transcription initiation	yes	N/A	0.453	0.055	0.345	1e-05
P87121	1172	Transcription initiation	yes	N/A	0.459	0.067	0.317	0.0004

>sp|Q24325|TAF2_DROME Transcription initiation factor TFIID subunit 2 OS=Drosophila melanogaster GN=Taf2 PE=1 SV=2

 Score =  147 bits (370), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 78/89 (87%)

Query: 75  DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLAL 134
           DSPVLWIRLDPEM ++R ++IEQPD+QWQYQLRHERDVTAQF AI+AL+++PT  TRLAL
Sbjct: 625 DSPVLWIRLDPEMILLRDLIIEQPDFQWQYQLRHERDVTAQFQAIQALQKYPTNATRLAL 684

Query: 135 TDTIESERAYVQVRCKAAQALTKVKEILV 163
           TDTIESER + QVRC+AA +LTKV   +V
Sbjct: 685 TDTIESERCFYQVRCEAAHSLTKVANQMV 713

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. An essential subunit binds to core promoter DNA.
Drosophila melanogaster (taxid: 7227)

>sp|Q5ZIT8|TAF2_CHICK Transcription initiation factor TFIID subunit 2 OS=Gallus gallus GN=TAF2 PE=2 SV=1

 Score =  110 bits (275), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/90 (54%), Positives = 67/90 (74%)

Query: 74  SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLA 133
           +DSP+LWIR+DP+M+++R V  EQ D+ WQYQLR+ERDV AQ +AI ALE+FPT  +RLA
Sbjct: 611 ADSPLLWIRIDPDMSVLRKVEFEQSDFMWQYQLRYERDVVAQEEAILALEKFPTPASRLA 670

Query: 134 LTDTIESERAYVQVRCKAAQALTKVKEILV 163
           LTD +E E+ + +VR  A   L K+   +V
Sbjct: 671 LTDILEQEQCFYRVRMLACFCLAKIANSMV 700

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. It requires core promoter-specific cofactors for productive transcription stimulation. TAF2 stabilizes TFIID binding to core promoter.

Gallus gallus (taxid: 9031)

>sp|Q6P1X5|TAF2_HUMAN Transcription initiation factor TFIID subunit 2 OS=Homo sapiens GN=TAF2 PE=1 SV=3

 Score =  110 bits (274), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/90 (53%), Positives = 67/90 (74%)

Query: 74  SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLA 133
           +DSP+LWIR+DP+M+++R V  EQ D+ WQYQLR+ERDV AQ ++I ALE+FPT  +RLA
Sbjct: 621 ADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQESILALEKFPTPASRLA 680

Query: 134 LTDTIESERAYVQVRCKAAQALTKVKEILV 163
           LTD +E E+ + +VR  A   L K+   +V
Sbjct: 681 LTDILEQEQCFYRVRMSACFCLAKIANSMV 710

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. It requires core promoter-specific cofactors for productive transcription stimulation. TAF2 stabilizes TFIID binding to core promoter.

Homo sapiens (taxid: 9606)

>sp|Q8C176|TAF2_MOUSE Transcription initiation factor TFIID subunit 2 OS=Mus musculus GN=Taf2 PE=2 SV=2

 Score =  108 bits (271), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/90 (52%), Positives = 67/90 (74%)

Query: 74  SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLA 133
           +DSP+LWIR+DP+M+++R V  EQ D+ WQY+LR+ERDV AQ ++I ALE+FPT  +RLA
Sbjct: 611 ADSPLLWIRIDPDMSVLRKVEFEQADFMWQYELRYERDVVAQQESILALEKFPTPASRLA 670

Query: 134 LTDTIESERAYVQVRCKAAQALTKVKEILV 163
           LTD +E E+ + +VR  A   L K+   +V
Sbjct: 671 LTDILEQEQCFYRVRMSACFCLAKIANSMV 700

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. It requires core promoter-specific cofactors for productive transcription stimulation. TAF2 stabilizes TFIID binding to core promoter.

Mus musculus (taxid: 10090)

>sp|Q32PW3|TAF2_DANRE Transcription initiation factor TFIID subunit 2 OS=Danio rerio GN=taf2 PE=2 SV=2

 Score =  106 bits (264), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 66/90 (73%)

Query: 74  SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLA 133
           +DSP+LWIR+DP+M+I+R V  EQ D+ WQYQLR+ERDV AQ +AI ALE+FPT  +R A
Sbjct: 610 ADSPLLWIRIDPDMSILRKVEFEQADFMWQYQLRYERDVVAQEEAILALEKFPTPPSRRA 669

Query: 134 LTDTIESERAYVQVRCKAAQALTKVKEILV 163
           LTD +E ++ + +VR  A   L K+   +V
Sbjct: 670 LTDILEQDQCFYKVRMHACFCLAKIANSMV 699

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. It requires core promoter-specific cofactors for productive transcription stimulation. TAF2 stabilizes TFIID binding to core promoter.

Danio rerio (taxid: 7955)

>sp|P23255|TAF2_YEAST Transcription initiation factor TFIID subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF2 PE=1 SV=3

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 80  WIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALER------FPTTTTRLA 133
           WIR+D ++  I  + I QPDY +  QLR + D+ AQ +AIR  E         +      
Sbjct: 842 WIRIDSDLEWICQMHINQPDYMFSSQLRQDGDIEAQLEAIRYYEDVVVNGGVKSLVYSSI 901

Query: 134 LTDTIESERAYVQVRCKAAQALTK 157
           L  T   ER +  +R  A +AL+K
Sbjct: 902 LFRTAIDERYFFGIRLAACEALSK 925

Functions as a component of the DNA-binding general transcription factor complex TFIID. Binding of TFIID to a promoter (with or without TATA element) is the initial step in pre-initiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modification (histone acetylation by TAF1), facilitation of DNA opening and initiation of transcription.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P87121|TAF2_SCHPO Transcription initiation factor TFIID subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf2 PE=3 SV=3

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 80  WIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTR---LALTD 136
           WIR+D +   I  + + QP++ +  QL+ +RDV AQ + IR       T ++     L  
Sbjct: 699 WIRVDADFEWICDLRVRQPEHMYVSQLQQDRDVVAQLETIRHFTSESFTVSQQVSTVLLR 758

Query: 137 TIESERAYVQVRCKAAQALTKV 158
           T+   R Y  +R +AA+AL + 
Sbjct: 759 TLLDNRYYYGIRQEAARALARC 780

Functions as a component of the DNA-binding general transcription factor complex TFIID. Binding of TFIID to a promoter (with or without TATA element) is the initial step in pre-initiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modification (histone acetylation by taf1), facilitation of DNA opening and initiation of transcription.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
270013200	1169	hypothetical protein TcasGA2_TC011774 [T	0.517	0.076	0.775	2e-34
189241274	1158	PREDICTED: similar to conserved hypothet	0.517	0.076	0.775	2e-34
24662032	1221	TBP-associated factor 2, isoform A [Dros	0.517	0.072	0.730	2e-33
195326481	1197	GM24832 [Drosophila sechellia] gi|194118	0.517	0.074	0.730	2e-33
195589193	1224	GD12884 [Drosophila simulans] gi|1941963	0.517	0.072	0.730	2e-33
541665	1213	dTAF II 150 [Drosophila melanogaster]	0.517	0.073	0.730	2e-33
195493074	1219	GE20292 [Drosophila yakuba] gi|194180364	0.517	0.073	0.719	6e-33
195428287	1224	GK17418 [Drosophila willistoni] gi|19415	0.529	0.074	0.703	7e-33
194868201	1222	GG13996 [Drosophila erecta] gi|190654027	0.517	0.072	0.719	7e-33
194750911	1221	GF23856 [Drosophila ananassae] gi|190625	0.517	0.072	0.696	3e-32

>gi|270013200|gb|EFA09648.1| hypothetical protein TcasGA2_TC011774 [Tribolium castaneum]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 78/89 (87%)

Query: 75  DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLAL 134
           DSPVLWIRLDPEMT++RSVVIEQPDYQWQYQLRHERDVTAQ +AI ALER+PT  TRLAL
Sbjct: 621 DSPVLWIRLDPEMTLLRSVVIEQPDYQWQYQLRHERDVTAQMEAIYALERYPTPATRLAL 680

Query: 135 TDTIESERAYVQVRCKAAQALTKVKEILV 163
           TDTIE+E+ Y +VRC+AA  LTKV   +V
Sbjct: 681 TDTIENEQCYYKVRCRAAHCLTKVANAMV 709

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241274|ref|XP_974531.2| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 78/89 (87%)

Query: 75  DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLAL 134
           DSPVLWIRLDPEMT++RSVVIEQPDYQWQYQLRHERDVTAQ +AI ALER+PT  TRLAL
Sbjct: 610 DSPVLWIRLDPEMTLLRSVVIEQPDYQWQYQLRHERDVTAQMEAIYALERYPTPATRLAL 669

Query: 135 TDTIESERAYVQVRCKAAQALTKVKEILV 163
           TDTIE+E+ Y +VRC+AA  LTKV   +V
Sbjct: 670 TDTIENEQCYYKVRCRAAHCLTKVANAMV 698

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24662032|ref|NP_729571.1| TBP-associated factor 2, isoform A [Drosophila melanogaster] gi|442631480|ref|NP_001261668.1| TBP-associated factor 2, isoform B [Drosophila melanogaster] gi|27924002|sp|Q24325.2|TAF2_DROME RecName: Full=Transcription initiation factor TFIID subunit 2; AltName: Full=Transcription initiation factor TFIID 150 kDa subunit; Short=TAF(II)150; Short=TAFII-150; Short=TAFII150 gi|17944283|gb|AAL48035.1| LD43729p [Drosophila melanogaster] gi|23093758|gb|AAF50190.2| TBP-associated factor 2, isoform A [Drosophila melanogaster] gi|220945982|gb|ACL85534.1| Taf2-PA [synthetic construct] gi|323301248|gb|ADX35966.1| LD23043p [Drosophila melanogaster] gi|440215588|gb|AGB94362.1| TBP-associated factor 2, isoform B [Drosophila melanogaster]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 78/89 (87%)

Query: 75  DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLAL 134
           DSPVLWIRLDPEM ++R ++IEQPD+QWQYQLRHERDVTAQF AI+AL+++PT  TRLAL
Sbjct: 625 DSPVLWIRLDPEMILLRDLIIEQPDFQWQYQLRHERDVTAQFQAIQALQKYPTNATRLAL 684

Query: 135 TDTIESERAYVQVRCKAAQALTKVKEILV 163
           TDTIESER + QVRC+AA +LTKV   +V
Sbjct: 685 TDTIESERCFYQVRCEAAHSLTKVANQMV 713

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195326481|ref|XP_002029957.1| GM24832 [Drosophila sechellia] gi|194118900|gb|EDW40943.1| GM24832 [Drosophila sechellia]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 78/89 (87%)

Query: 75  DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLAL 134
           DSPVLWIRLDPEM ++R ++IEQPD+QWQYQLRHERDVTAQF AI+AL+++PT  TRLAL
Sbjct: 603 DSPVLWIRLDPEMILLRDLIIEQPDFQWQYQLRHERDVTAQFQAIQALQKYPTNATRLAL 662

Query: 135 TDTIESERAYVQVRCKAAQALTKVKEILV 163
           TDTIESER + QVRC+AA +LTKV   +V
Sbjct: 663 TDTIESERCFYQVRCEAAHSLTKVANQMV 691

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195589193|ref|XP_002084340.1| GD12884 [Drosophila simulans] gi|194196349|gb|EDX09925.1| GD12884 [Drosophila simulans]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 78/89 (87%)

Query: 75  DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLAL 134
           DSPVLWIRLDPEM ++R ++IEQPD+QWQYQLRHERDVTAQF AI+AL+++PT  TRLAL
Sbjct: 630 DSPVLWIRLDPEMILLRDLIIEQPDFQWQYQLRHERDVTAQFQAIQALQKYPTNATRLAL 689

Query: 135 TDTIESERAYVQVRCKAAQALTKVKEILV 163
           TDTIESER + QVRC+AA +LTKV   +V
Sbjct: 690 TDTIESERCFYQVRCEAAHSLTKVANQMV 718

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|541665|emb|CAA55830.1| dTAF II 150 [Drosophila melanogaster]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 78/89 (87%)

Query: 75  DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLAL 134
           DSPVLWIRLDPEM ++R ++IEQPD+QWQYQLRHERDVTAQF AI+AL+++PT  TRLAL
Sbjct: 625 DSPVLWIRLDPEMILLRDLIIEQPDFQWQYQLRHERDVTAQFQAIQALQKYPTNATRLAL 684

Query: 135 TDTIESERAYVQVRCKAAQALTKVKEILV 163
           TDTIESER + QVRC+AA +LTKV   +V
Sbjct: 685 TDTIESERCFYQVRCEAAHSLTKVANQMV 713

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195493074|ref|XP_002094263.1| GE20292 [Drosophila yakuba] gi|194180364|gb|EDW93975.1| GE20292 [Drosophila yakuba]

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 78/89 (87%)

Query: 75  DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLAL 134
           DSPVLWIRLDPEM ++R ++IEQPD+QWQYQLRHERDVTAQF AI+AL+++PT  TRLAL
Sbjct: 623 DSPVLWIRLDPEMILLRDLIIEQPDFQWQYQLRHERDVTAQFQAIQALQKYPTNATRLAL 682

Query: 135 TDTIESERAYVQVRCKAAQALTKVKEILV 163
           TDTIESER + +VRC+AA +LTKV   +V
Sbjct: 683 TDTIESERCFYKVRCEAAHSLTKVANQMV 711

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428287|ref|XP_002062205.1| GK17418 [Drosophila willistoni] gi|194158290|gb|EDW73191.1| GK17418 [Drosophila willistoni]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 79/91 (86%)

Query: 75  DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLAL 134
           DSPVLWIRLDPEM ++R ++IEQPD+QWQYQLRHERDVTAQF AI+AL+++PT  TR+AL
Sbjct: 625 DSPVLWIRLDPEMILLRDLIIEQPDFQWQYQLRHERDVTAQFQAIQALQKYPTNATRMAL 684

Query: 135 TDTIESERAYVQVRCKAAQALTKVKEILVFA 165
           TDTIESER + +VRC+AA +LTKV   +V A
Sbjct: 685 TDTIESERCFYKVRCQAAHSLTKVANQMVAA 715

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194868201|ref|XP_001972244.1| GG13996 [Drosophila erecta] gi|190654027|gb|EDV51270.1| GG13996 [Drosophila erecta]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 78/89 (87%)

Query: 75  DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLAL 134
           DSPVLWIRLDPEM ++R ++IEQPD+QWQYQLRHERDVTAQF AI+AL+++PT  TRLAL
Sbjct: 626 DSPVLWIRLDPEMILLRDLIIEQPDFQWQYQLRHERDVTAQFQAIQALQKYPTNATRLAL 685

Query: 135 TDTIESERAYVQVRCKAAQALTKVKEILV 163
           TDTIESER + +VRC+AA +LTKV   +V
Sbjct: 686 TDTIESERCFYKVRCEAAHSLTKVANQMV 714

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194750911|ref|XP_001957773.1| GF23856 [Drosophila ananassae] gi|190625055|gb|EDV40579.1| GF23856 [Drosophila ananassae]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 78/89 (87%)

Query: 75  DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPTTTTRLAL 134
           DSPVLWIRLDPEM ++R ++IEQPD+QWQYQLRHE+DVTAQF AI+AL+++PT  TR+AL
Sbjct: 625 DSPVLWIRLDPEMILMRDLIIEQPDFQWQYQLRHEKDVTAQFQAIQALQKYPTNATRMAL 684

Query: 135 TDTIESERAYVQVRCKAAQALTKVKEILV 163
           TDTIESER + +VRC+AA +LTKV   +V
Sbjct: 685 TDTIESERCFYKVRCEAAHSLTKVANQMV 713

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
FB|FBgn0011836	1221	Taf2 "TBP-associated factor 2"	0.517	0.072	0.629	2.2e-34
UNIPROTKB|F1NKW6	770	F1NKW6 "Uncharacterized protei	0.523	0.116	0.466	9.9e-23
UNIPROTKB|F1MME0	1202	TAF2 "Uncharacterized protein"	0.523	0.074	0.477	2.9e-22
UNIPROTKB|Q5ZIT8	1168	TAF2 "Transcription initiation	0.523	0.077	0.466	3.4e-22
UNIPROTKB|Q6P1X5	1199	TAF2 "Transcription initiation	0.523	0.075	0.455	3.7e-22
UNIPROTKB|K7GP24	1100	TAF2 "Uncharacterized protein"	0.523	0.081	0.455	3.7e-22
UNIPROTKB|F1S282	1101	TAF2 "Uncharacterized protein"	0.523	0.081	0.455	3.7e-22
UNIPROTKB|E2QT19	1202	TAF2 "Uncharacterized protein"	0.523	0.074	0.455	4.7e-22
UNIPROTKB|F6UTN8	1206	TAF2 "Uncharacterized protein"	0.523	0.074	0.455	4.7e-22
ZFIN|ZDB-GENE-030131-3207	1191	taf2 "TAF2 RNA polymerase II,	0.523	0.075	0.466	7.4e-22

FB|FBgn0011836 Taf2 "TBP-associated factor 2" [Drosophila melanogaster (taxid:7227)]

 Score = 308 (113.5 bits), Expect = 2.2e-34, Sum P(2) = 2.2e-34
 Identities = 56/89 (62%), Positives = 69/89 (77%)

Query:    75 DSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPXXXXXXXX 134
             DSPVLWIRLDPEM ++R ++IEQPD+QWQYQLRHERDVTAQF AI+AL+++P        
Sbjct:   625 DSPVLWIRLDPEMILLRDLIIEQPDFQWQYQLRHERDVTAQFQAIQALQKYPTNATRLAL 684

Query:   135 XXXIESERAYVQVRCKAAQALTKVKEILV 163
                IESER + QVRC+AA +LTKV   +V
Sbjct:   685 TDTIESERCFYQVRCEAAHSLTKVANQMV 713

GO:0008134 "transcription factor binding" evidence=IPI

GO:0001129 "TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0005669 "transcription factor TFIID complex" evidence=ISS;IPI

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0001075 "RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1NKW6 F1NKW6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 228 (85.3 bits), Expect = 9.9e-23, Sum P(2) = 9.9e-23
 Identities = 42/90 (46%), Positives = 59/90 (65%)

Query:    74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPXXXXXXX 133
             +DSP+LWIR+DP+M+++R V  EQ D+ WQYQLR+ERDV AQ +AI ALE+FP       
Sbjct:   196 ADSPLLWIRIDPDMSVLRKVEFEQSDFMWQYQLRYERDVVAQEEAILALEKFPTPASRLA 255

Query:   134 XXXXIESERAYVQVRCKAAQALTKVKEILV 163
                 +E E+ + +VR  A   L K+   +V
Sbjct:   256 LTDILEQEQCFYRVRMLACFCLAKIANSMV 285

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1MME0 TAF2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 229 (85.7 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
 Identities = 43/90 (47%), Positives = 58/90 (64%)

Query:    74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPXXXXXXX 133
             +DSP+LWIR+DP+M ++R V  EQ D+ WQYQLR+ERDV AQ +AI ALERFP       
Sbjct:   623 ADSPLLWIRIDPDMAVLRKVDSEQADFMWQYQLRYERDVVAQQEAISALERFPTPASRLA 682

Query:   134 XXXXIESERAYVQVRCKAAQALTKVKEILV 163
                 +E E+ + +VR  A   L K+   +V
Sbjct:   683 LTDVLEQEQCFYRVRMAACFCLAKIANSMV 712

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

UNIPROTKB|Q5ZIT8 TAF2 "Transcription initiation factor TFIID subunit 2" [Gallus gallus (taxid:9031)]

 Score = 228 (85.3 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
 Identities = 42/90 (46%), Positives = 59/90 (65%)

Query:    74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPXXXXXXX 133
             +DSP+LWIR+DP+M+++R V  EQ D+ WQYQLR+ERDV AQ +AI ALE+FP       
Sbjct:   611 ADSPLLWIRIDPDMSVLRKVEFEQSDFMWQYQLRYERDVVAQEEAILALEKFPTPASRLA 670

Query:   134 XXXXIESERAYVQVRCKAAQALTKVKEILV 163
                 +E E+ + +VR  A   L K+   +V
Sbjct:   671 LTDILEQEQCFYRVRMLACFCLAKIANSMV 700

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q6P1X5 TAF2 "Transcription initiation factor TFIID subunit 2" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 41/90 (45%), Positives = 59/90 (65%)

Query:    74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPXXXXXXX 133
             +DSP+LWIR+DP+M+++R V  EQ D+ WQYQLR+ERDV AQ ++I ALE+FP       
Sbjct:   621 ADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQESILALEKFPTPASRLA 680

Query:   134 XXXXIESERAYVQVRCKAAQALTKVKEILV 163
                 +E E+ + +VR  A   L K+   +V
Sbjct:   681 LTDILEQEQCFYRVRMSACFCLAKIANSMV 710

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IMP

GO:0005669 "transcription factor TFIID complex" evidence=IDA

GO:0033276 "transcription factor TFTC complex" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

UNIPROTKB|K7GP24 TAF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 227 (85.0 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 41/90 (45%), Positives = 59/90 (65%)

Query:    74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPXXXXXXX 133
             +DSP+LWIR+DP+M+++R V  EQ D+ WQYQLR+ERDV AQ ++I ALE+FP       
Sbjct:   522 ADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQESILALEKFPTPASRLA 581

Query:   134 XXXXIESERAYVQVRCKAAQALTKVKEILV 163
                 +E E+ + +VR  A   L K+   +V
Sbjct:   582 LTDILEQEQCFYRVRMSACFCLAKIANSMV 611

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

UNIPROTKB|F1S282 TAF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 227 (85.0 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 41/90 (45%), Positives = 59/90 (65%)

Query:    74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPXXXXXXX 133
             +DSP+LWIR+DP+M+++R V  EQ D+ WQYQLR+ERDV AQ ++I ALE+FP       
Sbjct:   523 ADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQESILALEKFPTPASRLA 582

Query:   134 XXXXIESERAYVQVRCKAAQALTKVKEILV 163
                 +E E+ + +VR  A   L K+   +V
Sbjct:   583 LTDILEQEQCFYRVRMSACFCLAKIANSMV 612

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

UNIPROTKB|E2QT19 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 227 (85.0 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
 Identities = 41/90 (45%), Positives = 59/90 (65%)

Query:    74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPXXXXXXX 133
             +DSP+LWIR+DP+M+++R V  EQ D+ WQYQLR+ERDV AQ ++I ALE+FP       
Sbjct:   622 ADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQESILALEKFPTPASRLA 681

Query:   134 XXXXIESERAYVQVRCKAAQALTKVKEILV 163
                 +E E+ + +VR  A   L K+   +V
Sbjct:   682 LTDILEQEQCFYRVRMSACFCLAKIANSMV 711

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

UNIPROTKB|F6UTN8 TAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 227 (85.0 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
 Identities = 41/90 (45%), Positives = 59/90 (65%)

Query:    74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPXXXXXXX 133
             +DSP+LWIR+DP+M+++R V  EQ D+ WQYQLR+ERDV AQ ++I ALE+FP       
Sbjct:   621 ADSPLLWIRIDPDMSVLRKVEFEQADFMWQYQLRYERDVVAQQESILALEKFPTPASRLA 680

Query:   134 XXXXIESERAYVQVRCKAAQALTKVKEILV 163
                 +E E+ + +VR  A   L K+   +V
Sbjct:   681 LTDILEQEQCFYRVRMSACFCLAKIANSMV 710

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-3207 taf2 "TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)]

 Score = 225 (84.3 bits), Expect = 7.4e-22, Sum P(2) = 7.4e-22
 Identities = 42/90 (46%), Positives = 59/90 (65%)

Query:    74 SDSPVLWIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFPXXXXXXX 133
             +DSP+LWIR+DP+M+I+R V  EQ D+ WQYQLR+ERDV AQ +AI ALE+FP       
Sbjct:   610 ADSPLLWIRIDPDMSILRKVEFEQADFMWQYQLRYERDVVAQEEAILALEKFPTPPSRRA 669

Query:   134 XXXXIESERAYVQVRCKAAQALTKVKEILV 163
                 +E ++ + +VR  A   L K+   +V
Sbjct:   670 LTDILEQDQCFYKVRMHACFCLAKIANSMV 699

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24325	TAF2_DROME	No assigned EC number	0.7303	0.5174	0.0728	yes	N/A
Q6P1X5	TAF2_HUMAN	No assigned EC number	0.5333	0.5232	0.0750	yes	N/A
Q5ZIT8	TAF2_CHICK	No assigned EC number	0.5444	0.5232	0.0770	yes	N/A
Q32PW3	TAF2_DANRE	No assigned EC number	0.5333	0.5232	0.0755	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	172
cd09839	507	cd09839, M1_TAF2, TATA binding protein (TBP) assoc	4e-06

>gnl|CDD|189018 cd09839, M1_TAF2, TATA binding protein (TBP) associated factor 2

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 2   SPQYLDIMRKKAHLMIRMLEHRIGFELILQ 31
           SP Y + M  KAHL++RMLE RIG E  LQ
Sbjct: 408 SPLYGEFMALKAHLVLRMLERRIGKESFLQ 437

This family includes TATA binding protein (TBP) associated factor 2 (TAF2, TBP-associated factor TAFII150, transcription initiation factor TFIID subunit 2, RNA polymerase II TBP-associated factor subunit B), and has homology to the aminopeptidase N (APN) subfamily, belonging to the M1 gluzincin family. TAF2 is part of the TFIID multidomain subunit complex essential for transcription of most protein-encoded genes by RNA polymerase II. TAF2 is known to interact with the initiator element (Inr) found at the transcription start site of many genes, thus possibly playing a key role in promoter binding as well as start-site selection. Image analysis has shown TAF2 to form a complex with TAF1 and TBP, inferring its role in promoter recognition. Peptidases in the M1 family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. TAF2, however, does not seem to contain any of the active site residues. Length = 507

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 37/183 (20%)

Query: 14  HLMIRMLEHRIGFELILQLRLPRPVDSVGSGDDYYSSDSP--VLWIRLDPEMTIIRSVVI 71
           H+     EH+  ++ IL +     VD+    D     D P  +L      E   I  +++
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNF---DCKDVQDMPKSIL---SKEE---IDHIIM 56

Query: 72  EASDSP----VLWIRLDPEMTIIRSVVIE--QPDYQW-----QYQLRHERDVTAQFDAIR 120
                     + W  L  +  +++  V E  + +Y++     + + R    +T  +  I 
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY--IE 114

Query: 121 ALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEILVF-----------AVALR 169
             +R        A    +   + Y+++R +A   L   K +L+                 
Sbjct: 115 QRDRLYNDNQVFA-KYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 170 SAK 172
           S K
Sbjct: 173 SYK 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
3b34_A	891	Aminopeptidase N; protease, hydrolase, thermolysin	97.16
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.74
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	95.83
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	95.67
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	95.65
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	95.42
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	95.4
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	94.58
2gtq_A	867	Aminopeptidase N; alanine aminopeptidase, M1 famil	94.2
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	93.66
3ebh_A	889	PFA-M1, M1 family aminopeptidase; hydrolase, metal	88.9
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	84.13
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	81.98

>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*

Probab=97.16  E-value=0.0011  Score=64.21  Aligned_cols=62  Identities=19%  Similarity=0.153  Sum_probs=54.5

Q ss_pred             eEEecCCCceeEEEeecCCHHHHHHHHhhCCChHHHHHHHHHHhcCC----------------ChhHHHHHHHHhhcC
Q psy13489         80 WIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERFP----------------TTTTRLALTDTIESE  141 (172)
Q Consensus        80 WIRiDpd~ewL~~v~~~QP~~Mw~~QLq~DrDVvAQ~EAI~aL~k~~----------------s~~~~~~L~r~L~d~  141 (172)
                      ||++|++|....+|+.++++++|..||++|+|+.+|.||++.|++..                +...+.++..+|.|+
T Consensus       550 ~~~l~~~~s~~~~v~~~~~~~~l~~~l~~d~d~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  627 (891)
T 3b34_A          550 VPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWDAAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDE  627 (891)
T ss_dssp             EEEESTTCCSSCEEECCCCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHCS
T ss_pred             cEEEcCCCcceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhhhcCCCcCccHHHHHHHHHHhcCC
Confidence            69999999999999999999999999999999999999999998742                134677888888764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.74  E-value=0.0054  Score=44.23  Aligned_cols=57  Identities=18%  Similarity=0.124  Sum_probs=49.4

Q ss_pred             HHHHhhCCChHHHHHHHHHHhcCCChhHHHHHHHHhhcCCcchHHHHHHHHHHHhhhhh
Q psy13489        103 QYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEI  161 (172)
Q Consensus       103 ~~QLq~DrDVvAQ~EAI~aL~k~~s~~~~~~L~r~L~d~~~FygVR~eAA~aLak~a~~  161 (172)
                      ...+-.|+|...|..|+.+|++.+...++..|.+.+.|+  -+.||..|+.+|+++...
T Consensus        47 L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~~  103 (131)
T 1te4_A           47 LLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDD--SGFVRSGAARSLEQIGGE  103 (131)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCSH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCcH
Confidence            334446899999999999999999999999999999875  679999999999998764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=95.83  E-value=0.013  Score=42.15  Aligned_cols=56  Identities=20%  Similarity=0.079  Sum_probs=47.8

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHhcCCChhHHHHHHHHhhcCCcchHHHHHHHHHHHhh
Q psy13489        100 YQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKV  158 (172)
Q Consensus       100 ~Mw~~QLq~DrDVvAQ~EAI~aL~k~~s~~~~~~L~r~L~d~~~FygVR~eAA~aLak~  158 (172)
                      ......| .|+|..-+..|+.+|++.+.+.+...|...+.++  -..||..|+.+|+++
T Consensus        76 ~~L~~~L-~d~~~~VR~~A~~aL~~~~~~~a~~~L~~~l~d~--~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           76 EPLIKLL-EDDSGFVRSGAARSLEQIGGERVRAAMEKLAETG--TGFARKVAVNYLETH  131 (131)
T ss_dssp             HHHHHHH-HHCCTHHHHHHHHHHHHHCSHHHHHHHHHHTTSC--CTHHHHHHHHHGGGC
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCC--CHHHHHHHHHHHHhC
Confidence            3444555 6899999999999999999999999999999765  468999999999874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=95.67  E-value=0.019  Score=43.49  Aligned_cols=52  Identities=21%  Similarity=0.126  Sum_probs=24.6

Q ss_pred             hCCChHHHHHHHHHHhcCCChhHHHHHHHHhhcCCcchHHHHHHHHHHHhhhhh
Q psy13489        108 HERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEI  161 (172)
Q Consensus       108 ~DrDVvAQ~EAI~aL~k~~s~~~~~~L~r~L~d~~~FygVR~eAA~aLak~a~~  161 (172)
                      .|+|..-+..|+.+|++.+.+.+...|.+.+.++.  ..||..|+.+|.++.+.
T Consensus       153 ~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~--~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          153 KDEDGWVRQSAADALGEIGGERVRAAMEKLAETGT--GFARKVAVNYLETHKSF  204 (211)
T ss_dssp             TCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCC--HHHHHHHHHHHHC----
T ss_pred             cCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCC--HHHHHHHHHHHHhcCCC
Confidence            44555555555555555555555555555554432  33555555555555443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=95.65  E-value=0.023  Score=43.10  Aligned_cols=56  Identities=21%  Similarity=0.225  Sum_probs=30.0

Q ss_pred             HHHHHhhCCChHHHHHHHHHHhcCCChhHHHHHHHHhhcCCcchHHHHHHHHHHHhhhh
Q psy13489        102 WQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKE  160 (172)
Q Consensus       102 w~~QLq~DrDVvAQ~EAI~aL~k~~s~~~~~~L~r~L~d~~~FygVR~eAA~aLak~a~  160 (172)
                      +...|. |+|..-|..|+.+|++.+.+.+...|.+.+.++  ...||..|+.+|+++..
T Consensus        24 L~~~L~-~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~   79 (211)
T 3ltm_A           24 YIKNLQ-DDSYYVRRAAAYALGKIGDERAVEPLIKALKDE--DAWVRRAAADALGQIGD   79 (211)
T ss_dssp             HHHHTT-CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS--CHHHHHHHHHHHHHHCC
T ss_pred             HHHHHc-CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCC--CHHHHHHHHHHHHhhCC
Confidence            444443 455555555555555555555555555555443  34555555555555543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=95.42  E-value=0.031  Score=42.00  Aligned_cols=55  Identities=22%  Similarity=0.147  Sum_probs=36.5

Q ss_pred             HHhhCCChHHHHHHHHHHhcCCChhHHHHHHHHhhcCCcchHHHHHHHHHHHhhhhh
Q psy13489        105 QLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEI  161 (172)
Q Consensus       105 QLq~DrDVvAQ~EAI~aL~k~~s~~~~~~L~r~L~d~~~FygVR~eAA~aLak~a~~  161 (172)
                      .+-.|+|..-|..|+.+|++.+.+.++..|.+.+.|+  -..||..|+.+|+++..+
T Consensus       114 ~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~~  168 (201)
T 3ltj_A          114 KALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDE--DGWVRQSAADALGEIGGE  168 (201)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCSH
T ss_pred             HHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCch
Confidence            3345667777777777777777666777777777654  456777777777776543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=95.40  E-value=0.029  Score=42.18  Aligned_cols=51  Identities=24%  Similarity=0.182  Sum_probs=26.7

Q ss_pred             hCCChHHHHHHHHHHhcCCChhHHHHHHHHhhcCCcchHHHHHHHHHHHhhhh
Q psy13489        108 HERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKE  160 (172)
Q Consensus       108 ~DrDVvAQ~EAI~aL~k~~s~~~~~~L~r~L~d~~~FygVR~eAA~aLak~a~  160 (172)
                      .|+|..-|..|+.+|++.+.+.+...|.+.+.++  -+.||..|+.+|+++..
T Consensus        86 ~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~  136 (201)
T 3ltj_A           86 KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDE--DWFVRIAAAFALGEIGD  136 (201)
T ss_dssp             TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHTC
T ss_pred             cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC
Confidence            3455555555555555555555555555555432  34555555555555543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=94.58  E-value=0.048  Score=43.10  Aligned_cols=50  Identities=16%  Similarity=0.118  Sum_probs=23.9

Q ss_pred             hCCChHHHHHHHHHHhcCC--ChhHHHHHHHHhhcCCcchHHHHHHHHHHHhhh
Q psy13489        108 HERDVTAQFDAIRALERFP--TTTTRLALTDTIESERAYVQVRCKAAQALTKVK  159 (172)
Q Consensus       108 ~DrDVvAQ~EAI~aL~k~~--s~~~~~~L~r~L~d~~~FygVR~eAA~aLak~a  159 (172)
                      .|+|..-+..|+.+|+..+  ++.+...|.+.+.|+  -..||..|+.+|++++
T Consensus       169 ~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          169 KDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             TCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhC
Confidence            3444445555555555443  344444555554433  2445555555555544

>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}

Probab=94.20  E-value=0.15  Score=49.03  Aligned_cols=74  Identities=14%  Similarity=0.054  Sum_probs=57.3

Q ss_pred             eEEecCCCceeEEEeecCCHHHHHHHHhhCCChHHHHHHHHHHhcC-------------C---ChhHHHHHHHHhhcCCc
Q psy13489         80 WIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERF-------------P---TTTTRLALTDTIESERA  143 (172)
Q Consensus        80 WIRiDpd~ewL~~v~~~QP~~Mw~~QLq~DrDVvAQ~EAI~aL~k~-------------~---s~~~~~~L~r~L~d~~~  143 (172)
                      |++++++|.-..+++.++++.+|..+|.+|+|+..|.+|++.|++.             .   ......++..++.++.-
T Consensus       524 ~~~l~r~fs~~~~l~~~~~~~~l~~l~~~~~d~~~R~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  603 (867)
T 2gtq_A          524 VPSLLRGFSAPVHLNYPYSDDDLLLLLAHDSDAFTRWEAAQTLYRRAVAANLATLSDGVELPKHEKLLAAVEKVISDDLL  603 (867)
T ss_dssp             EEEESTTCCSSCEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHCSSS
T ss_pred             ceEecCCCCccEEEECCCCHHHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHhcCcCC
Confidence            6999999999999999999999999999999999999997766542             1   23466777777756543


Q ss_pred             chHHHHHHHH
Q psy13489        144 YVQVRCKAAQ  153 (172)
Q Consensus       144 FygVR~eAA~  153 (172)
                      -+.|+.++..
T Consensus       604 d~~~~a~~l~  613 (867)
T 2gtq_A          604 DNAFKALLLG  613 (867)
T ss_dssp             CHHHHHHHTC
T ss_pred             CHHHHHHHhc
Confidence            5555555443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=93.66  E-value=0.12  Score=40.80  Aligned_cols=58  Identities=12%  Similarity=0.004  Sum_probs=43.3

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHhcCCChhHHHHHHHHhhcCCcchHHHHHHHHHHHhhhh
Q psy13489        100 YQWQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKE  160 (172)
Q Consensus       100 ~Mw~~QLq~DrDVvAQ~EAI~aL~k~~s~~~~~~L~r~L~d~~~FygVR~eAA~aLak~a~  160 (172)
                      ..+...| .|+|..-|..|+.+|++.+++.+...|.+.+.++  -+.||..|+.+|++++.
T Consensus        26 ~~L~~~L-~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~l~~   83 (280)
T 1oyz_A           26 DELFRLL-DDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDK--NYIRRDIGAFILGQIKI   83 (280)
T ss_dssp             HHHHHHT-TCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCC--CHHHHHHHHHHHHHhcc
Confidence            4455666 4678888888888888888877888888888765  45788888888887763

>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*

Probab=88.90  E-value=0.43  Score=46.47  Aligned_cols=46  Identities=9%  Similarity=-0.010  Sum_probs=41.8

Q ss_pred             eEEecCCCceeEEEeecCCHHHHHHHHhhCCChHHHHHHHHHHhcC
Q psy13489         80 WIRLDPEMTIIRSVVIEQPDYQWQYQLRHERDVTAQFDAIRALERF  125 (172)
Q Consensus        80 WIRiDpd~ewL~~v~~~QP~~Mw~~QLq~DrDVvAQ~EAI~aL~k~  125 (172)
                      |..++++|.-..+++.++++.++..||++|.|..++.||++.|++.
T Consensus       534 ~~sl~r~fsa~v~l~~~~~~~~l~~l~~~d~d~~~r~~a~~~l~~~  579 (889)
T 3ebh_A          534 IPSLFRGFSAPVYIEDQLTDEERILLLKYDSDAFVRYNSCTNIYMK  579 (889)
T ss_dssp             EEEESTTCCSSSEEECCCCHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             eEEEcCCCCceEEEeCCCCHHHHHHHHhhCCChhHHHHHHHHHHHH
Confidence            4479999999999999999999999999999999999999998643

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=84.13  E-value=1.5  Score=33.45  Aligned_cols=62  Identities=19%  Similarity=0.190  Sum_probs=47.9

Q ss_pred             CCHHHHHHHHhhCCChHHHHHHHHHHhcCCC-----------hhHHHHHHHHhhcCCcchHHHHHHHHHHHhhhh
Q psy13489         97 QPDYQWQYQLRHERDVTAQFDAIRALERFPT-----------TTTRLALTDTIESERAYVQVRCKAAQALTKVKE  160 (172)
Q Consensus        97 QP~~Mw~~QLq~DrDVvAQ~EAI~aL~k~~s-----------~~~~~~L~r~L~d~~~FygVR~eAA~aLak~a~  160 (172)
                      .+.|.+...+-++.|..-|..|+.+|.+.-+           ..++..|.+.|.+..  ..||..|+.+|+.++.
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~   83 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIAS   83 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC--HHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHhc
Confidence            3456666666677999999999999965322           135778889998764  8999999999999986

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=81.98  E-value=2.3  Score=31.48  Aligned_cols=62  Identities=19%  Similarity=0.160  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHhhCCChHHHHHHHHHHhcCCC--h---------hHHHHHHHHhhcCCcchHHHHHHHHHHHhhhh
Q psy13489         97 QPDYQWQYQLRHERDVTAQFDAIRALERFPT--T---------TTRLALTDTIESERAYVQVRCKAAQALTKVKE  160 (172)
Q Consensus        97 QP~~Mw~~QLq~DrDVvAQ~EAI~aL~k~~s--~---------~~~~~L~r~L~d~~~FygVR~eAA~aLak~a~  160 (172)
                      .+.+.....|-++.|...|.+|+.+|+....  .         .++..|.+.|.+.  -..||..|+.+|+.++.
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~   83 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS   83 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhc
Confidence            4566777788888999999999999987642  2         2567888888765  57999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.94
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.95
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	95.69
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	91.72

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.94  E-value=0.0015  Score=44.16  Aligned_cols=57  Identities=19%  Similarity=0.144  Sum_probs=50.1

Q ss_pred             HHHHHhhCCChHHHHHHHHHHhcCCChhHHHHHHHHhhcCCcchHHHHHHHHHHHhhhhh
Q psy13489        102 WQYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEI  161 (172)
Q Consensus       102 w~~QLq~DrDVvAQ~EAI~aL~k~~s~~~~~~L~r~L~d~~~FygVR~eAA~aLak~a~~  161 (172)
                      ....| .|.|..-+..|+.+|++.++..++..|.+.+.|+  -+.||..|+.+|++++.+
T Consensus        27 L~~~l-~d~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~d~--~~~VR~~a~~aL~~i~~~   83 (111)
T d1te4a_          27 LLESL-SNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDD--SGFVRSGAARSLEQIGGE   83 (111)
T ss_dssp             HHHGG-GCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCSH
T ss_pred             HHHHH-cCCCHHHHHHHHHHHHhcchhhhHHHHHhhhccc--hhHHHHHHHHHHHHhCcc
Confidence            44455 5889999999999999999999999999999886  568999999999999865

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.95  E-value=0.0051  Score=41.38  Aligned_cols=51  Identities=22%  Similarity=0.154  Sum_probs=45.0

Q ss_pred             HHhhCCChHHHHHHHHHHhcCCChhHHHHHHHHhhcCCcchHHHHHHHHHHHh
Q psy13489        105 QLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTK  157 (172)
Q Consensus       105 QLq~DrDVvAQ~EAI~aL~k~~s~~~~~~L~r~L~d~~~FygVR~eAA~aLak  157 (172)
                      .+-.|+|...+..|+++|++.+++.+...|...+.++  -..||..|+.+|.+
T Consensus        60 ~~l~d~~~~VR~~a~~aL~~i~~~~~~~~L~~ll~d~--~~~vr~~A~~aL~t  110 (111)
T d1te4a_          60 KLLEDDSGFVRSGAARSLEQIGGERVRAAMEKLAETG--TGFARKVAVNYLET  110 (111)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHHCSHHHHHHHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred             hhhccchhHHHHHHHHHHHHhCccchHHHHHHHHcCC--CHHHHHHHHHHHHc
Confidence            4446899999999999999999999999999999876  46799999999975

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.011  Score=43.41  Aligned_cols=56  Identities=13%  Similarity=0.077  Sum_probs=44.4

Q ss_pred             HHHHhhCCChHHHHHHHHHHhcCCChhHHHHHHHHhhcCCcchHHHHHHHHHHHhhhh
Q psy13489        103 QYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKE  160 (172)
Q Consensus       103 ~~QLq~DrDVvAQ~EAI~aL~k~~s~~~~~~L~r~L~d~~~FygVR~eAA~aLak~a~  160 (172)
                      ...+-.|+|..-+..|+++|+..++..++..|.+.+.++.  +.||..|+.+|+++..
T Consensus        24 L~~~L~d~~~~vR~~A~~~L~~~~~~~~~~~l~~~l~d~~--~~vr~~a~~aL~~l~~   79 (276)
T d1oyza_          24 LFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKN--YIRRDIGAFILGQIKI   79 (276)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSS--HHHHHHHHHHHHHSCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHhhCCHhHHHHHHHHHcCCC--HHHHHHHHHHHHHhcc
Confidence            3345568888888999999988888888888888888764  6688888888887653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=91.72  E-value=0.11  Score=37.75  Aligned_cols=55  Identities=13%  Similarity=0.148  Sum_probs=46.8

Q ss_pred             HHHHhhCCChHHHHHHHHHHhcCCChhHHHHHHHHhhcCCcchHHHHHHHHHHHhhhhh
Q psy13489        103 QYQLRHERDVTAQFDAIRALERFPTTTTRLALTDTIESERAYVQVRCKAAQALTKVKEI  161 (172)
Q Consensus       103 ~~QLq~DrDVvAQ~EAI~aL~k~~s~~~~~~L~r~L~d~~~FygVR~eAA~aLak~a~~  161 (172)
                      ..++..+.+...+..++.++++.+...++..|.+.+.++.    ||..|+.+|++++++
T Consensus       193 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~d~~----vr~~a~~aL~~ig~~  247 (276)
T d1oyza_         193 FVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT----VYDDIIEAAGELGDK  247 (276)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSS----CCHHHHHHHHHHCCG
T ss_pred             hhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHhCChH----HHHHHHHHHHHcCCH
Confidence            3445577899999999999999999889999999998753    899999999999865