Psyllid ID: psy13494


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
MSTCQREGKDFIIFATKEDHAIPSSVELPPPEPQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDEDLDDVKDESIRKEAQEKADRIIEQADSGSSHTNKK
ccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccc
cccHccccccEEEEEEcccccccccccccccccccccEcccccEcccccccccccccccHHHHHHHHHHEEEccccccccHHHHHHHHHHHHHHHcHHHcHHHccccHHHcHHHccccccccccccccccccccccccccccc
MSTCQREGKDFIIFAtkedhaipssvelpppepqpglilpdgsinwncpclggmatgpcgvqfreafscfhystdepkgvncFEAFKTMQDCMAqyptlykqnddddedlddvkDESIRKEAQEKADRIIeqadsgsshtnkk
MSTCQREGKDFIIFATKEDHAIPSSVELPPPEPQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLykqnddddeDLDDVKDESIRKEAQekadriieqadsgsshtnkk
MSTCQREGKDFIIFATKEDHAipssvelpppepqpglilpDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQNddddedlddvkdESIRKEAQEKADRIIEQADSGSSHTNKK
**********FIIFAT********************LILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLY*******************************************
******EGKDFIIF***************************GSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYP**********************************************
MSTCQREGKDFIIFATKEDHAIPSSVELPPPEPQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDEDLDDVKDESIRKEAQEKADRI**************
*STC**EGKDFIIFATKED********L******PGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDD**************************************
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oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTCQREGKDFIIFATKEDHAIPSSVELPPPEPQPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDEDLDDVKDESIRKEAQEKADRIIEQADSGSSHTNKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query143 2.2.26 [Sep-21-2011]
Q6DEI8146 Mitochondrial intermembra yes N/A 0.748 0.732 0.625 4e-36
Q8N4Q1142 Mitochondrial intermembra yes N/A 0.713 0.718 0.635 2e-35
Q5BJN5139 Mitochondrial intermembra yes N/A 0.930 0.956 0.542 2e-35
Q63ZK1139 Mitochondrial intermembra N/A N/A 0.713 0.733 0.626 4e-35
Q8VEA4139 Mitochondrial intermembra yes N/A 0.930 0.956 0.535 4e-35
Q6PBC3139 Mitochondrial intermembra yes N/A 0.713 0.733 0.616 2e-34
Q6NU12139 Mitochondrial intermembra N/A N/A 0.699 0.719 0.628 6e-34
Q2KHZ4137 Mitochondrial intermembra yes N/A 0.713 0.744 0.598 2e-33
P36046403 Mitochondrial intermembra yes N/A 0.692 0.245 0.504 3e-23
P0CM68242 Mitochondrial intermembra yes N/A 0.545 0.322 0.594 7e-23
>sp|Q6DEI8|MIA40_DANRE Mitochondrial intermembrane space import and assembly protein 40 OS=Danio rerio GN=chchd4 PE=2 SV=1 Back     alignment and function desciption
 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 84/112 (75%), Gaps = 5/112 (4%)

Query: 1   MSTCQREGKDFIIFATKEDHAIPSSVELPPPEPQP-----GLILPDGSINWNCPCLGGMA 55
           MS C++EGKD IIF TKEDH  PS+ EL   +P       GLILP+G INWNCPCLGGMA
Sbjct: 1   MSYCKQEGKDCIIFVTKEDHEAPSNAELVEDDPNDPYEDHGLILPNGDINWNCPCLGGMA 60

Query: 56  TGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDD 107
           +GPCG QF++AFSCFHYS +E KG +C E F+ MQ+CM +YP LY Q DD+D
Sbjct: 61  SGPCGQQFKDAFSCFHYSKEEIKGSDCVENFRGMQECMQKYPELYPQEDDND 112




Required for the import and folding of small cysteine-containing proteins (small Tim) in the mitochondrial intermembrane space (IMS). Probably acts by forming a redox cycle with GFER/ERV1 that involves a disulfide relay system. Precursor proteins to be imported into the IMS are translocated in their reduced form into the mitochondria. The oxidized form of MIA40 forms a transient intermolecular disulfide bridge with the reduced precursor protein, resulting in oxidation of the precursor protein that now contains an intramolecular disulfide bond and is able to undergo folding in the IMS.
Danio rerio (taxid: 7955)
>sp|Q8N4Q1|MIA40_HUMAN Mitochondrial intermembrane space import and assembly protein 40 OS=Homo sapiens GN=CHCHD4 PE=1 SV=1 Back     alignment and function description
>sp|Q5BJN5|MIA40_RAT Mitochondrial intermembrane space import and assembly protein 40 OS=Rattus norvegicus GN=Chchd4 PE=2 SV=1 Back     alignment and function description
>sp|Q63ZK1|MI40B_XENLA Mitochondrial intermembrane space import and assembly protein 40-B OS=Xenopus laevis GN=chchd4-b PE=2 SV=1 Back     alignment and function description
>sp|Q8VEA4|MIA40_MOUSE Mitochondrial intermembrane space import and assembly protein 40 OS=Mus musculus GN=Chchd4 PE=1 SV=1 Back     alignment and function description
>sp|Q6PBC3|MIA40_XENTR Mitochondrial intermembrane space import and assembly protein 40 OS=Xenopus tropicalis GN=chchd4 PE=2 SV=1 Back     alignment and function description
>sp|Q6NU12|MI40A_XENLA Mitochondrial intermembrane space import and assembly protein 40-A OS=Xenopus laevis GN=chchd4-a PE=2 SV=1 Back     alignment and function description
>sp|Q2KHZ4|MIA40_BOVIN Mitochondrial intermembrane space import and assembly protein 40 OS=Bos taurus GN=CHCHD4 PE=2 SV=1 Back     alignment and function description
>sp|P36046|MIA40_YEAST Mitochondrial intermembrane space import and assembly protein 40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIA40 PE=1 SV=2 Back     alignment and function description
>sp|P0CM68|MIA40_CRYNJ Mitochondrial intermembrane space import and assembly protein 40 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MIA40 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query143
157114223156 hypothetical protein AaeL_AAEL001085 [Ae 0.993 0.910 0.571 9e-44
332023563144 Mitochondrial intermembrane space import 0.972 0.965 0.597 9e-43
340714017157 PREDICTED: mitochondrial intermembrane s 0.804 0.732 0.686 1e-42
350421189156 PREDICTED: mitochondrial intermembrane s 0.804 0.737 0.686 1e-42
383863873158 PREDICTED: mitochondrial intermembrane s 0.951 0.860 0.584 2e-42
322793574160 hypothetical protein SINV_11196 [Solenop 0.769 0.687 0.672 3e-41
242022669164 mitochondrial intermembrane space import 1.0 0.871 0.6 5e-41
312384254 464 hypothetical protein AND_02365 [Anophele 0.776 0.239 0.666 1e-40
189237671137 PREDICTED: similar to mitochondrial inte 0.720 0.751 0.716 1e-40
307174010166 Mitochondrial intermembrane space import 0.699 0.602 0.72 2e-40
>gi|157114223|ref|XP_001657994.1| hypothetical protein AaeL_AAEL001085 [Aedes aegypti] gi|108883600|gb|EAT47825.1| AAEL001085-PA [Aedes aegypti] Back     alignment and taxonomy information
 Score =  181 bits (459), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 88/154 (57%), Positives = 107/154 (69%), Gaps = 12/154 (7%)

Query: 1   MSTCQREGKDFIIFATKEDHAIPSSVELPPPEPQPGLILPDGSINWNCPCLGGMATGPCG 60
           MS C+  GKD +IFAT EDHA PS+VELP PE  PGLIL +G INWNCPCLGGMATGPCG
Sbjct: 1   MSLCKSFGKDKVIFATAEDHATPSTVELPEPEASPGLILDNGDINWNCPCLGGMATGPCG 60

Query: 61  VQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDDD------------DE 108
           V+FREAFSCFHYS  +PKG +C++AFKTMQDCMA YP +YKQN  D            DE
Sbjct: 61  VEFREAFSCFHYSEAQPKGSDCYDAFKTMQDCMANYPGVYKQNLQDEEEGGMDLGAVLDE 120

Query: 109 DLDDVKDESIRKEAQEKADRIIEQADSGSSHTNK 142
           D +D   +++++EA  +A      A S ++   K
Sbjct: 121 DEEDPDKQTLKQEATSQASHSAPDAGSSTAIAQK 154




Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023563|gb|EGI63799.1| Mitochondrial intermembrane space import and assembly protein 40 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340714017|ref|XP_003395529.1| PREDICTED: mitochondrial intermembrane space import and assembly protein 40-B-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350421189|ref|XP_003492764.1| PREDICTED: mitochondrial intermembrane space import and assembly protein 40-B-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383863873|ref|XP_003707404.1| PREDICTED: mitochondrial intermembrane space import and assembly protein 40-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|322793574|gb|EFZ17056.1| hypothetical protein SINV_11196 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|242022669|ref|XP_002431761.1| mitochondrial intermembrane space import and assembly protein 40-B, putative [Pediculus humanus corporis] gi|212517086|gb|EEB19023.1| mitochondrial intermembrane space import and assembly protein 40-B, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|312384254|gb|EFR29022.1| hypothetical protein AND_02365 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|189237671|ref|XP_967514.2| PREDICTED: similar to mitochondrial intermembrane space import and assembly protein 40 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307174010|gb|EFN64720.1| Mitochondrial intermembrane space import and assembly protein 40 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query143
FB|FBgn0260468158 CG7950 [Drosophila melanogaste 0.713 0.645 0.539 6.4e-28
RGD|1310746139 Chchd4 "coiled-coil-helix-coil 0.930 0.956 0.45 6.4e-28
UNIPROTKB|Q8N4Q1142 CHCHD4 "Mitochondrial intermem 0.713 0.718 0.532 1.3e-27
MGI|MGI:1919420139 Chchd4 "coiled-coil-helix-coil 0.930 0.956 0.442 1.3e-27
ZFIN|ZDB-GENE-040801-46146 chchd4 "coiled-coil-helix-coil 0.713 0.698 0.542 4.5e-27
UNIPROTKB|Q63ZK1139 chchd4-b "Mitochondrial interm 0.713 0.733 0.523 5.7e-27
UNIPROTKB|Q6NU12139 chchd4-a "Mitochondrial interm 0.937 0.964 0.433 7.3e-27
UNIPROTKB|Q6PBC3139 chchd4 "Mitochondrial intermem 0.713 0.733 0.514 9.4e-27
UNIPROTKB|Q2KHZ4137 CHCHD4 "Mitochondrial intermem 0.713 0.744 0.514 3.2e-26
ZFIN|ZDB-GENE-041010-149152 zgc:101803 "zgc:101803" [Danio 0.720 0.677 0.425 6.3e-21
FB|FBgn0260468 CG7950 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 55/102 (53%), Positives = 67/102 (65%)

Query:     2 STCQREGKDFIIFATKEDHAXXXXXXXXXXXXXXXXXXXDGSINWNCPCLGGMATGPCGV 61
             S C+  GKD +IF TKEDHA                   DG INW+CPCLGGMATGPCGV
Sbjct:     4 SYCKEYGKDKVIFVTKEDHATPSTIELPPPEKPEGVITKDGKINWSCPCLGGMATGPCGV 63

Query:    62 QFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQN 103
              FREAFSCF  ST +PKG +C++AF  M+DC  +YPT+Y ++
Sbjct:    64 DFREAFSCFQNSTADPKGSDCYDAFTKMRDCFQKYPTVYNKS 105




GO:0005575 "cellular_component" evidence=ND
RGD|1310746 Chchd4 "coiled-coil-helix-coiled-coil-helix domain containing 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N4Q1 CHCHD4 "Mitochondrial intermembrane space import and assembly protein 40" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1919420 Chchd4 "coiled-coil-helix-coiled-coil-helix domain containing 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-46 chchd4 "coiled-coil-helix-coiled-coil-helix domain containing 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q63ZK1 chchd4-b "Mitochondrial intermembrane space import and assembly protein 40-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NU12 chchd4-a "Mitochondrial intermembrane space import and assembly protein 40-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6PBC3 chchd4 "Mitochondrial intermembrane space import and assembly protein 40" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHZ4 CHCHD4 "Mitochondrial intermembrane space import and assembly protein 40" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-149 zgc:101803 "zgc:101803" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q757A5MIA40_ASHGONo assigned EC number0.54540.53140.2857yesN/A
P0CM68MIA40_CRYNJNo assigned EC number0.59490.54540.3223yesN/A
Q6DEI8MIA40_DANRENo assigned EC number0.6250.74820.7328yesN/A
Q5BJN5MIA40_RATNo assigned EC number0.54280.93000.9568yesN/A
Q4WGL2MIA40_ASPFUNo assigned EC number0.64400.41250.1986yesN/A
Q6CSA1MIA40_KLULANo assigned EC number0.58820.47550.1674yesN/A
Q6FW26MIA40_CANGANo assigned EC number0.53480.57340.2029yesN/A
P36046MIA40_YEASTNo assigned EC number0.50450.69230.2456yesN/A
Q2KHZ4MIA40_BOVINNo assigned EC number0.59810.71320.7445yesN/A
Q8N4Q1MIA40_HUMANNo assigned EC number0.63550.71320.7183yesN/A
Q8VEA4MIA40_MOUSENo assigned EC number0.53570.93000.9568yesN/A
Q6PBC3MIA40_XENTRNo assigned EC number0.61680.71320.7338yesN/A
Q4IK03MIA40_GIBZENo assigned EC number0.54540.53140.2065yesN/A
P87059MIA40_SCHPONo assigned EC number0.51280.53840.2460yesN/A
Q6BSK8MIA40_DEBHANo assigned EC number0.50630.55240.3172yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query143
pfam0674735 pfam06747, CHCH, CHCH domain 9e-04
>gnl|CDD|148383 pfam06747, CHCH, CHCH domain Back     alignment and domain information
 Score = 34.5 bits (80), Expect = 9e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 59 CGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQ 95
          CG +F+    C   ++DE     C + F   + C+ +
Sbjct: 1  CGEEFKAFLKCLKENSDE--LSKCRKEFDAFRQCVKK 35


we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterized proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11-kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit. The CHCH domain was previously called DUF657. Length = 35


Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query143
2k3j_A146 The Solution Structure Of Human Mia40 Length = 146 6e-29
2l0y_A146 Complex Hmia40-Hcox17 Length = 146 4e-28
2zxt_A465 Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY 4e-21
3a3c_A451 Crystal Structure Of Tim40MIA40 FUSING MBP, C296S A 4e-19
>pdb|2K3J|A Chain A, The Solution Structure Of Human Mia40 Length = 146 Back     alignment and structure

Iteration: 1

Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 58/107 (54%), Positives = 70/107 (65%), Gaps = 5/107 (4%) Query: 1 MSTCQREGKDFIIFATKEDH-----AXXXXXXXXXXXXXXXXXXXDGSINWNCPCLGGMA 55 MS C++EGKD IIF TKEDH A +G+INWNCPCLGGMA Sbjct: 5 MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMA 64 Query: 56 TGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQ 102 +GPCG QF+ AFSCFHYST+E KG +C + F+ MQ+CM +YP LY Q Sbjct: 65 SGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQ 111
>pdb|2L0Y|A Chain A, Complex Hmia40-Hcox17 Length = 146 Back     alignment and structure
>pdb|2ZXT|A Chain A, Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY SYSTEM IN Mitochondria, Solved As Mbp Fusion Protein Length = 465 Back     alignment and structure
>pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND C298S Mutant Length = 451 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query143
2k3j_A146 Mitochondrial intermembrane space import and assem 2e-47
2zxt_A465 Maltose-binding periplasmic protein, linker, MITO 1e-28
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A Length = 146 Back     alignment and structure
 Score =  149 bits (376), Expect = 2e-47
 Identities = 74/142 (52%), Positives = 96/142 (67%), Gaps = 5/142 (3%)

Query: 1   MSTCQREGKDFIIFATKEDHAIPSSVELPPPEP-----QPGLILPDGSINWNCPCLGGMA 55
           MS C++EGKD IIF TKEDH  PSS EL   +P     + GLILP+G+INWNCPCLGGMA
Sbjct: 5   MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMA 64

Query: 56  TGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDEDLDDVKD 115
           +GPCG QF+ AFSCFHYST+E KG +C + F+ MQ+CM +YP LY Q D+D+E+  + K 
Sbjct: 65  SGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEEREKKP 124

Query: 116 ESIRKEAQEKADRIIEQADSGS 137
               +E         ++ +  S
Sbjct: 125 AEQAEETAPIEATATKEEEGSS 146


>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli} Length = 465 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query143
2k3j_A146 Mitochondrial intermembrane space import and assem 100.0
2zxt_A465 Maltose-binding periplasmic protein, linker, MITO 100.0
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A Back     alignment and structure
Probab=100.00  E-value=6.5e-57  Score=350.42  Aligned_cols=113  Identities=63%  Similarity=1.241  Sum_probs=64.9

Q ss_pred             CccccccCCceEEEeccCCCCCCCCCCCCCCCC-----CCCCCCCCCcccccCCccCCCCCCCcHHHHhhhhccccccCC
Q psy13494          1 MSTCQREGKDFIIFATKEDHAIPSSVELPPPEP-----QPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTD   75 (143)
Q Consensus         1 ms~~~~egKD~iiFvTkEd~~~Ps~~el~~~~~-----~~G~~~p~GeINwdCPCLggMa~GPCG~eFkeAFSCF~~S~~   75 (143)
                      |||||++|||+|||||||||++|++++|++++|     ++|+++|||+|||+|||||||++||||++||+|||||+||++
T Consensus         5 msy~r~~gKD~Vif~TkEe~~~ps~~el~~~d~~~~~~~~g~~~p~GeINwdCPClggma~GPCG~eFreAfsCF~~S~~   84 (146)
T 2k3j_A            5 MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKSAFSCFHYSTE   84 (146)
T ss_dssp             ----------------------------------------CCBCTTSSBCTTSHHHHHHTSSSTHHHHHHHHHHHHHHCC
T ss_pred             hhhhhhhcCceEEEeCHHHhcCcccccccCCCCCcccccCCccCCCCceeecCCcccccCCCCcHHHHHHHHHhhccCcc
Confidence            999999999999999999999999999998776     579999999999999999999999999999999999999999


Q ss_pred             CCCcCchHHHHHHHHHHHHhChhhhCCCCCCCccchhH
Q psy13494         76 EPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDEDLDDV  113 (143)
Q Consensus        76 e~Kg~dC~e~F~amq~Cm~~~Pd~y~~~~~~~~~~~~~  113 (143)
                      ++||+||+++|++||+||++||++|+++++++++...+
T Consensus        85 e~Kg~dC~e~F~~mq~Cm~~~P~~y~~~~~~~~~~~~~  122 (146)
T 2k3j_A           85 EIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEEREK  122 (146)
T ss_dssp             SSTTTTTHHHHHHHHHHHHHCSSCC-------------
T ss_pred             ccccchHHHHHHHHHHHHHHChHhhccccccccccccc
Confidence            99999999999999999999999999988777665544



>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00