Psyllid ID: psy13494
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 143 | ||||||
| 157114223 | 156 | hypothetical protein AaeL_AAEL001085 [Ae | 0.993 | 0.910 | 0.571 | 9e-44 | |
| 332023563 | 144 | Mitochondrial intermembrane space import | 0.972 | 0.965 | 0.597 | 9e-43 | |
| 340714017 | 157 | PREDICTED: mitochondrial intermembrane s | 0.804 | 0.732 | 0.686 | 1e-42 | |
| 350421189 | 156 | PREDICTED: mitochondrial intermembrane s | 0.804 | 0.737 | 0.686 | 1e-42 | |
| 383863873 | 158 | PREDICTED: mitochondrial intermembrane s | 0.951 | 0.860 | 0.584 | 2e-42 | |
| 322793574 | 160 | hypothetical protein SINV_11196 [Solenop | 0.769 | 0.687 | 0.672 | 3e-41 | |
| 242022669 | 164 | mitochondrial intermembrane space import | 1.0 | 0.871 | 0.6 | 5e-41 | |
| 312384254 | 464 | hypothetical protein AND_02365 [Anophele | 0.776 | 0.239 | 0.666 | 1e-40 | |
| 189237671 | 137 | PREDICTED: similar to mitochondrial inte | 0.720 | 0.751 | 0.716 | 1e-40 | |
| 307174010 | 166 | Mitochondrial intermembrane space import | 0.699 | 0.602 | 0.72 | 2e-40 |
| >gi|157114223|ref|XP_001657994.1| hypothetical protein AaeL_AAEL001085 [Aedes aegypti] gi|108883600|gb|EAT47825.1| AAEL001085-PA [Aedes aegypti] | Back alignment and taxonomy information |
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Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 88/154 (57%), Positives = 107/154 (69%), Gaps = 12/154 (7%)
Query: 1 MSTCQREGKDFIIFATKEDHAIPSSVELPPPEPQPGLILPDGSINWNCPCLGGMATGPCG 60
MS C+ GKD +IFAT EDHA PS+VELP PE PGLIL +G INWNCPCLGGMATGPCG
Sbjct: 1 MSLCKSFGKDKVIFATAEDHATPSTVELPEPEASPGLILDNGDINWNCPCLGGMATGPCG 60
Query: 61 VQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDDD------------DE 108
V+FREAFSCFHYS +PKG +C++AFKTMQDCMA YP +YKQN D DE
Sbjct: 61 VEFREAFSCFHYSEAQPKGSDCYDAFKTMQDCMANYPGVYKQNLQDEEEGGMDLGAVLDE 120
Query: 109 DLDDVKDESIRKEAQEKADRIIEQADSGSSHTNK 142
D +D +++++EA +A A S ++ K
Sbjct: 121 DEEDPDKQTLKQEATSQASHSAPDAGSSTAIAQK 154
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332023563|gb|EGI63799.1| Mitochondrial intermembrane space import and assembly protein 40 [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|340714017|ref|XP_003395529.1| PREDICTED: mitochondrial intermembrane space import and assembly protein 40-B-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|350421189|ref|XP_003492764.1| PREDICTED: mitochondrial intermembrane space import and assembly protein 40-B-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|383863873|ref|XP_003707404.1| PREDICTED: mitochondrial intermembrane space import and assembly protein 40-like [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|322793574|gb|EFZ17056.1| hypothetical protein SINV_11196 [Solenopsis invicta] | Back alignment and taxonomy information |
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| >gi|242022669|ref|XP_002431761.1| mitochondrial intermembrane space import and assembly protein 40-B, putative [Pediculus humanus corporis] gi|212517086|gb|EEB19023.1| mitochondrial intermembrane space import and assembly protein 40-B, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|312384254|gb|EFR29022.1| hypothetical protein AND_02365 [Anopheles darlingi] | Back alignment and taxonomy information |
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| >gi|189237671|ref|XP_967514.2| PREDICTED: similar to mitochondrial intermembrane space import and assembly protein 40 [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|307174010|gb|EFN64720.1| Mitochondrial intermembrane space import and assembly protein 40 [Camponotus floridanus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 143 | ||||||
| FB|FBgn0260468 | 158 | CG7950 [Drosophila melanogaste | 0.713 | 0.645 | 0.539 | 6.4e-28 | |
| RGD|1310746 | 139 | Chchd4 "coiled-coil-helix-coil | 0.930 | 0.956 | 0.45 | 6.4e-28 | |
| UNIPROTKB|Q8N4Q1 | 142 | CHCHD4 "Mitochondrial intermem | 0.713 | 0.718 | 0.532 | 1.3e-27 | |
| MGI|MGI:1919420 | 139 | Chchd4 "coiled-coil-helix-coil | 0.930 | 0.956 | 0.442 | 1.3e-27 | |
| ZFIN|ZDB-GENE-040801-46 | 146 | chchd4 "coiled-coil-helix-coil | 0.713 | 0.698 | 0.542 | 4.5e-27 | |
| UNIPROTKB|Q63ZK1 | 139 | chchd4-b "Mitochondrial interm | 0.713 | 0.733 | 0.523 | 5.7e-27 | |
| UNIPROTKB|Q6NU12 | 139 | chchd4-a "Mitochondrial interm | 0.937 | 0.964 | 0.433 | 7.3e-27 | |
| UNIPROTKB|Q6PBC3 | 139 | chchd4 "Mitochondrial intermem | 0.713 | 0.733 | 0.514 | 9.4e-27 | |
| UNIPROTKB|Q2KHZ4 | 137 | CHCHD4 "Mitochondrial intermem | 0.713 | 0.744 | 0.514 | 3.2e-26 | |
| ZFIN|ZDB-GENE-041010-149 | 152 | zgc:101803 "zgc:101803" [Danio | 0.720 | 0.677 | 0.425 | 6.3e-21 |
| FB|FBgn0260468 CG7950 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 55/102 (53%), Positives = 67/102 (65%)
Query: 2 STCQREGKDFIIFATKEDHAXXXXXXXXXXXXXXXXXXXDGSINWNCPCLGGMATGPCGV 61
S C+ GKD +IF TKEDHA DG INW+CPCLGGMATGPCGV
Sbjct: 4 SYCKEYGKDKVIFVTKEDHATPSTIELPPPEKPEGVITKDGKINWSCPCLGGMATGPCGV 63
Query: 62 QFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQN 103
FREAFSCF ST +PKG +C++AF M+DC +YPT+Y ++
Sbjct: 64 DFREAFSCFQNSTADPKGSDCYDAFTKMRDCFQKYPTVYNKS 105
|
|
| RGD|1310746 Chchd4 "coiled-coil-helix-coiled-coil-helix domain containing 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8N4Q1 CHCHD4 "Mitochondrial intermembrane space import and assembly protein 40" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| MGI|MGI:1919420 Chchd4 "coiled-coil-helix-coiled-coil-helix domain containing 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040801-46 chchd4 "coiled-coil-helix-coiled-coil-helix domain containing 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q63ZK1 chchd4-b "Mitochondrial intermembrane space import and assembly protein 40-B" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6NU12 chchd4-a "Mitochondrial intermembrane space import and assembly protein 40-A" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q6PBC3 chchd4 "Mitochondrial intermembrane space import and assembly protein 40" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q2KHZ4 CHCHD4 "Mitochondrial intermembrane space import and assembly protein 40" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-041010-149 zgc:101803 "zgc:101803" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 143 | |||
| pfam06747 | 35 | pfam06747, CHCH, CHCH domain | 9e-04 |
| >gnl|CDD|148383 pfam06747, CHCH, CHCH domain | Back alignment and domain information |
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Score = 34.5 bits (80), Expect = 9e-04
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 59 CGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQ 95
CG +F+ C ++DE C + F + C+ +
Sbjct: 1 CGEEFKAFLKCLKENSDE--LSKCRKEFDAFRQCVKK 35
|
we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterized proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11-kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit. The CHCH domain was previously called DUF657. Length = 35 |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 143 | ||||
| 2k3j_A | 146 | The Solution Structure Of Human Mia40 Length = 146 | 6e-29 | ||
| 2l0y_A | 146 | Complex Hmia40-Hcox17 Length = 146 | 4e-28 | ||
| 2zxt_A | 465 | Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY | 4e-21 | ||
| 3a3c_A | 451 | Crystal Structure Of Tim40MIA40 FUSING MBP, C296S A | 4e-19 |
| >pdb|2K3J|A Chain A, The Solution Structure Of Human Mia40 Length = 146 | Back alignment and structure |
|
| >pdb|2L0Y|A Chain A, Complex Hmia40-Hcox17 Length = 146 | Back alignment and structure |
| >pdb|2ZXT|A Chain A, Crystal Structure Of Tim40MIA40, A DISULFIDE RELAY SYSTEM IN Mitochondria, Solved As Mbp Fusion Protein Length = 465 | Back alignment and structure |
| >pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND C298S Mutant Length = 451 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 143 | |||
| 2k3j_A | 146 | Mitochondrial intermembrane space import and assem | 2e-47 | |
| 2zxt_A | 465 | Maltose-binding periplasmic protein, linker, MITO | 1e-28 |
| >2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A Length = 146 | Back alignment and structure |
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Score = 149 bits (376), Expect = 2e-47
Identities = 74/142 (52%), Positives = 96/142 (67%), Gaps = 5/142 (3%)
Query: 1 MSTCQREGKDFIIFATKEDHAIPSSVELPPPEP-----QPGLILPDGSINWNCPCLGGMA 55
MS C++EGKD IIF TKEDH PSS EL +P + GLILP+G+INWNCPCLGGMA
Sbjct: 5 MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMA 64
Query: 56 TGPCGVQFREAFSCFHYSTDEPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDEDLDDVKD 115
+GPCG QF+ AFSCFHYST+E KG +C + F+ MQ+CM +YP LY Q D+D+E+ + K
Sbjct: 65 SGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEEREKKP 124
Query: 116 ESIRKEAQEKADRIIEQADSGS 137
+E ++ + S
Sbjct: 125 AEQAEETAPIEATATKEEEGSS 146
|
| >2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli} Length = 465 | Back alignment and structure |
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 143 | |||
| 2k3j_A | 146 | Mitochondrial intermembrane space import and assem | 100.0 | |
| 2zxt_A | 465 | Maltose-binding periplasmic protein, linker, MITO | 100.0 |
| >2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A | Back alignment and structure |
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Probab=100.00 E-value=6.5e-57 Score=350.42 Aligned_cols=113 Identities=63% Similarity=1.241 Sum_probs=64.9
Q ss_pred CccccccCCceEEEeccCCCCCCCCCCCCCCCC-----CCCCCCCCCcccccCCccCCCCCCCcHHHHhhhhccccccCC
Q psy13494 1 MSTCQREGKDFIIFATKEDHAIPSSVELPPPEP-----QPGLILPDGSINWNCPCLGGMATGPCGVQFREAFSCFHYSTD 75 (143)
Q Consensus 1 ms~~~~egKD~iiFvTkEd~~~Ps~~el~~~~~-----~~G~~~p~GeINwdCPCLggMa~GPCG~eFkeAFSCF~~S~~ 75 (143)
|||||++|||+|||||||||++|++++|++++| ++|+++|||+|||+|||||||++||||++||+|||||+||++
T Consensus 5 msy~r~~gKD~Vif~TkEe~~~ps~~el~~~d~~~~~~~~g~~~p~GeINwdCPClggma~GPCG~eFreAfsCF~~S~~ 84 (146)
T 2k3j_A 5 MSYCRQEGKDRIIFVTKEDHETPSSAELVADDPNDPYEEHGLILPNGNINWNCPCLGGMASGPCGEQFKSAFSCFHYSTE 84 (146)
T ss_dssp ----------------------------------------CCBCTTSSBCTTSHHHHHHTSSSTHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhcCceEEEeCHHHhcCcccccccCCCCCcccccCCccCCCCceeecCCcccccCCCCcHHHHHHHHHhhccCcc
Confidence 999999999999999999999999999998776 579999999999999999999999999999999999999999
Q ss_pred CCCcCchHHHHHHHHHHHHhChhhhCCCCCCCccchhH
Q psy13494 76 EPKGVNCFEAFKTMQDCMAQYPTLYKQNDDDDEDLDDV 113 (143)
Q Consensus 76 e~Kg~dC~e~F~amq~Cm~~~Pd~y~~~~~~~~~~~~~ 113 (143)
++||+||+++|++||+||++||++|+++++++++...+
T Consensus 85 e~Kg~dC~e~F~~mq~Cm~~~P~~y~~~~~~~~~~~~~ 122 (146)
T 2k3j_A 85 EIKGSDCVDQFRAMQECMQKYPDLYPQEDEDEEEEREK 122 (146)
T ss_dssp SSTTTTTHHHHHHHHHHHHHCSSCC-------------
T ss_pred ccccchHHHHHHHHHHHHHHChHhhccccccccccccc
Confidence 99999999999999999999999999988777665544
|
| >2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00