Psyllid ID: psy13511

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MTSRGRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPFHKMSRKLKERPTELRSLSTR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHcHHcccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHccccccccccHHHHHHHHccccccHHccccc
Coil and Loop (DISEMBL)
MTSRGRTFSGIIKSFLetsgplndtylplyetdagrrVYDATLASVRENFPQYVEEIEgtadgakvpfhkmsrklkerptelrslstr
Flexible Loop (DISEMBL)
MTSRGRTFSGIIKSfletsgplndTYLPLYETDAGRRVYDATLASVRENFPQYVEEIegtadgakvpfhkmsrklkerptelrslstr
Low Complexity Region (SEG)
MTSRGRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPFHKMSRKLKERPTELRSLSTR
Disordered region (IsUnstruct)
********SGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIE******************************
Disordered Region (DISOPRED)
**S*GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPFHKMSRKLKERPTELRSL***
Disordered Region (DISEMBL)
********SGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPFHKMSRK**************
Disordered Region (DISPRO)
*****RTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPFHKMSRKLK************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSRGRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPFHKMSRKLKERPTELRSLSTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
157167597	386	hypothetical protein AaeL_AAEL002457 [Ae	0.761	0.173	0.701	2e-22
157167595	392	hypothetical protein AaeL_AAEL002457 [Ae	0.761	0.170	0.701	2e-22
170042003	386	conserved hypothetical protein [Culex qu	0.761	0.173	0.686	3e-22
312382030	390	hypothetical protein AND_05569 [Anophele	0.761	0.171	0.686	1e-21
383855246	399	PREDICTED: uncharacterized protein LOC10	0.761	0.167	0.656	6e-20
340715564	394	PREDICTED: hypothetical protein LOC10064	0.761	0.170	0.641	1e-19
350396741	394	PREDICTED: hypothetical protein LOC10074	0.761	0.170	0.641	1e-19
195447932	388	GK25797 [Drosophila willistoni] gi|19416	0.761	0.172	0.611	2e-18
195356369	387	GM22371 [Drosophila sechellia] gi|195565	0.761	0.173	0.611	3e-18
195481620	387	GE15464 [Drosophila yakuba] gi|169144964	0.761	0.173	0.611	3e-18

>gi|157167597|ref|XP_001655263.1| hypothetical protein AaeL_AAEL002457 [Aedes aegypti] gi|108882121|gb|EAT46346.1| AAEL002457-PB [Aedes aegypti]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 59/67 (88%)

Query: 5  GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
          GRTF+ IIK+FL+ SGPLNDTYLPLY TD GR+VY+ TL SV+++FPQY+ E+EGTADGA
Sbjct: 31 GRTFAAIIKNFLQLSGPLNDTYLPLYNTDEGRKVYNETLESVKKSFPQYIRELEGTADGA 90

Query: 65 KVPFHKM 71
          +V FHK+
Sbjct: 91 QVEFHKL 97

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167595|ref|XP_001655262.1| hypothetical protein AaeL_AAEL002457 [Aedes aegypti] gi|108882120|gb|EAT46345.1| AAEL002457-PA [Aedes aegypti]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/67 (70%), Positives = 59/67 (88%)

Query: 5   GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
           GRTF+ IIK+FL+ SGPLNDTYLPLY TD GR+VY+ TL SV+++FPQY+ E+EGTADGA
Sbjct: 37  GRTFAAIIKNFLQLSGPLNDTYLPLYNTDEGRKVYNETLESVKKSFPQYIRELEGTADGA 96

Query: 65  KVPFHKM 71
           +V FHK+
Sbjct: 97  QVEFHKL 103

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170042003|ref|XP_001848733.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167865545|gb|EDS28928.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  108 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/67 (68%), Positives = 60/67 (89%)

Query: 5  GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
          GRTF+ +IK+FL+ SGPLNDTYLPLY TD GR+VY+ATL +V+++FPQY+ E+EGTADGA
Sbjct: 31 GRTFAALIKNFLQLSGPLNDTYLPLYNTDEGRKVYNATLETVKKSFPQYIRELEGTADGA 90

Query: 65 KVPFHKM 71
          +V FHK+
Sbjct: 91 QVEFHKL 97

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312382030|gb|EFR27618.1| hypothetical protein AND_05569 [Anopheles darlingi]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 59/67 (88%)

Query: 5  GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
          GRTF+ IIK+FL+ SGPLN+TYLPLY T+ GR+VY+ATL SV+ +FPQY+ E+EGTADGA
Sbjct: 31 GRTFAAIIKNFLQLSGPLNETYLPLYNTEEGRKVYNATLESVKRSFPQYIRELEGTADGA 90

Query: 65 KVPFHKM 71
          +V FHK+
Sbjct: 91 QVEFHKL 97

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855246|ref|XP_003703127.1| PREDICTED: uncharacterized protein LOC100881641 [Megachile rotundata]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 56/67 (83%)

Query: 5   GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
           GRTFSG+I+S+++   PLN+TYLPLYET+AGR++Y+ TLA V E FP Y+ EI GTADGA
Sbjct: 40  GRTFSGLIRSYMDRYRPLNETYLPLYETEAGRKIYEETLACVEEQFPGYLREIRGTADGA 99

Query: 65  KVPFHKM 71
            VPFHK+
Sbjct: 100 DVPFHKL 106

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715564|ref|XP_003396281.1| PREDICTED: hypothetical protein LOC100649211 [Bombus terrestris]

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 56/67 (83%)

Query: 5   GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
           GRTFS +I+ F++   PLN+TYLPLY+T+AGR++YD TLA V + FP YV+EI+GTADGA
Sbjct: 36  GRTFSDLIQKFVDAYRPLNETYLPLYKTEAGRKIYDETLACVEQQFPGYVKEIQGTADGA 95

Query: 65  KVPFHKM 71
            VPFHK+
Sbjct: 96  NVPFHKL 102

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396741|ref|XP_003484648.1| PREDICTED: hypothetical protein LOC100741126 [Bombus impatiens]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 56/67 (83%)

Query: 5   GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
           GRTFS +I+ F++   PLN+TYLPLYET+AGR++Y+ TLA V + FP YV+EI+GTADGA
Sbjct: 36  GRTFSDLIQKFVDAYRPLNETYLPLYETEAGRKIYEETLACVEQQFPGYVKEIQGTADGA 95

Query: 65  KVPFHKM 71
            VPFHK+
Sbjct: 96  NVPFHKL 102

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195447932|ref|XP_002071435.1| GK25797 [Drosophila willistoni] gi|194167520|gb|EDW82421.1| GK25797 [Drosophila willistoni]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 55/67 (82%)

Query: 5  GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
          GRTF  +IK+FL  S PLN+TYLPLY++  GR++Y+ TL SV+E+FPQY+ E+EG ADGA
Sbjct: 30 GRTFGSMIKNFLILSNPLNETYLPLYQSPKGRQIYNETLESVKESFPQYIRELEGVADGA 89

Query: 65 KVPFHKM 71
          +V FHK+
Sbjct: 90 EVEFHKL 96

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195356369|ref|XP_002044646.1| GM22371 [Drosophila sechellia] gi|195565901|ref|XP_002106534.1| GD16075 [Drosophila simulans] gi|194133227|gb|EDW54743.1| GM22371 [Drosophila sechellia] gi|194203912|gb|EDX17488.1| GD16075 [Drosophila simulans]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 55/67 (82%)

Query: 5  GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
          GRTF  +IK+FL  S PLN+TYLPLY++  GR++Y+ TL SV+++FPQYV E+EG ADGA
Sbjct: 30 GRTFGSMIKNFLILSKPLNETYLPLYQSPKGRQIYNETLGSVKDSFPQYVRELEGVADGA 89

Query: 65 KVPFHKM 71
          +V FHK+
Sbjct: 90 EVEFHKL 96

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195481620|ref|XP_002101714.1| GE15464 [Drosophila yakuba] gi|169144964|gb|ACA49238.1| tan [Drosophila santomea] gi|194189238|gb|EDX02822.1| GE15464 [Drosophila yakuba]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 55/67 (82%)

Query: 5  GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
          GRTF  +IK+FL  S PLN+TYLPLY++  GR++Y+ TL SV+++FPQYV E+EG ADGA
Sbjct: 30 GRTFGSMIKNFLILSKPLNETYLPLYQSPKGRQIYNETLGSVKDSFPQYVRELEGVADGA 89

Query: 65 KVPFHKM 71
          +V FHK+
Sbjct: 90 EVEFHKL 96

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
FB|FBgn0086367	387	t "tan" [Drosophila melanogast	0.761	0.173	0.611	5.4e-19

FB|FBgn0086367 t "tan" [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 5.4e-19, P = 5.4e-19
 Identities = 41/67 (61%), Positives = 55/67 (82%)

Query:     5 GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
             GRTF  +IK+FL  S PLN+TYLPLY++  GR++Y+ TL SV+++FPQYV E+EG ADGA
Sbjct:    30 GRTFGSMIKNFLILSKPLNETYLPLYQSPKGRQIYNETLGSVKDSFPQYVRELEGVADGA 89

Query:    65 KVPFHKM 71
             +V FHK+
Sbjct:    90 EVEFHKL 96


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        88   0.00091  102 3  11 23  0.50    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  466 (50 KB)
  Total size of DFA:  86 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.56u 0.10s 11.66t   Elapsed:  00:00:00
  Total cpu time:  11.56u 0.10s 11.66t   Elapsed:  00:00:00
  Start:  Thu Aug 15 12:58:18 2013   End:  Thu Aug 15 12:58:18 2013

GO:0007629 "flight behavior" evidence=IMP

GO:0003832 "beta-alanyl-dopamine hydrolase activity" evidence=IDA;IMP

GO:0016787 "hydrolase activity" evidence=IDA

GO:0001692 "histamine metabolic process" evidence=IMP

GO:0042318 "penicillin biosynthetic process" evidence=IEA

GO:0042416 "dopamine biosynthetic process" evidence=IDA

GO:0031964 "beta-alanyl-histamine hydrolase activity" evidence=IDA

GO:0048067 "cuticle pigmentation" evidence=IMP

GO:0001694 "histamine biosynthetic process" evidence=IDA

GO:0007601 "visual perception" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
2x1d_A	357	Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltran	3e-09

>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A Length = 357

 Score = 51.0 bits (121), Expect = 3e-09
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 5  GRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGA 64
          G     +I   ++ +  L        + +  ++V       + E +P+Y EEI G A GA
Sbjct: 18 GSAAKAVIARSIDFAVDLIRGKTKKTDEEL-KQVLSQLGRVIEERWPKYYEEIRGIAKGA 76

Query: 65 KVPFHKM 71
          +    ++
Sbjct: 77 ERDVSEI 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
2x1d_A	357	Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltran	99.71
1dul_A	69	Signal recognition particle protein (fifty-four ho	80.77

>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A

Probab=99.71  E-value=9e-18  Score=124.65  Aligned_cols=75  Identities=19%  Similarity=0.214  Sum_probs=58.2

Q ss_pred             chHHHhHHHHHHHHH----hhchhhHhhhcccccCHHHHHHHHHHHHHHHHhCchHHHHHHHhhcccCCCHHHHHHhhcC
Q psy13511          2 TSRGRTFSGIIKSFL----ETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTADGAKVPFHKMSRKLKE   77 (88)
Q Consensus         2 yeiG~~~g~~I~~~i----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~P~y~eEmrGIAdGAgv~fedI~lin~~   77 (88)
                      ||+|.++|++.++.|    ..+..+++.+.++ .|++.++.++++++.+++++|+|+|||+|||||+|+|+++|+++|+-
T Consensus        11 ye~G~~~G~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~eEi~GiA~g~~~~~~~i~~ln~~   89 (357)
T 2x1d_A           11 FEIGYEHGSAAKAVIARSIDFAVDLIRGKTKK-TDEELKQVLSQLGRVIEERWPKYYEEIRGIAKGAERDVSEIVMLNTR   89 (357)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhhChhHHHHHHHHHhhcCCCHHHHHhhhcH
Confidence            566666666555554    4455554444443 35566999999999999999999999999999999999999999984

>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C

Probab=80.77  E-value=0.51  Score=27.99  Aligned_cols=28  Identities=21%  Similarity=0.377  Sum_probs=21.3

Q ss_pred             CchHH--HHHHHhhcccCCCHHHHHHhhcC
Q psy13511         50 FPQYV--EEIEGTADGAKVPFHKMSRKLKE   77 (88)
Q Consensus        50 ~P~y~--eEmrGIAdGAgv~fedI~lin~~   77 (88)
                      .|+++  .=.+=||.|||++..||--+-+|
T Consensus        29 nP~ii~~SR~~RIA~GSG~~v~eVn~Llkq   58 (69)
T 1dul_A           29 KPEIIKGSRKRRIAAGSGMQVQDVNRLLKQ   58 (69)
T ss_dssp             CGGGCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CccccCHHHHHHHHccCCCCHHHHHHHHHH
Confidence            46665  34577999999999999766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1n8va_	101	Chemosensory protein Csp2 {Cabbage moth (Mamestra	80.62

>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Chemosensory protein Csp2
family: Chemosensory protein Csp2
domain: Chemosensory protein Csp2
species: Cabbage moth (Mamestra brassicae) [TaxId: 55057]

Probab=80.62  E-value=3.4  Score=24.41  Aligned_cols=51  Identities=12%  Similarity=0.127  Sum_probs=38.4

Q ss_pred             HHHhHHHHHHHHHhhchhhHhhhcccccCHHHHHHHHHHHHHHHHhCchHHHHHHHhhc
Q psy13511          4 RGRTFSGIIKSFLETSGPLNDTYLPLYETDAGRRVYDATLASVRENFPQYVEEIEGTAD   62 (88)
Q Consensus         4 iG~~~g~~I~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~P~y~eEmrGIAd   62 (88)
                      .|+.+++.|.+.|...      -..  =++..+..+++.+..+.+..|+.|++|.-.=|
T Consensus        37 egk~lK~~lPeal~t~------C~k--CT~kQK~~~~kvi~~l~~~~p~~w~~l~~KYD   87 (101)
T d1n8va_          37 EGKELKEHLQDAIENG------CKK--CTENQEKGAYRVIEHLIKNEIEIWRELTAKYD   87 (101)
T ss_dssp             HHHHHHHHHHHHHHHT------TTT--CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred             HHHHHHHHhHHHHHcc------ccC--CCHHHHHHHHHHHHHHHHcCcHHHHHHHHHHC
Confidence            4677777777776553      111  26777999999999999999999999875443