Psyllid ID: psy13560

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEPLVPRESKTKKAVPWAPSLPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIRDQDRNTRESKTKKAVPWAPSLPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIRDQDRNTRRMRRLANTTTGW
Secondary Structure (PSIPRED)
cccccccccccEEEEccccEEEEEHHHHHHHHHcccccHHHHccccccccccHHHHHHHHHHccccccccccccccccccHHHHHccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccEEEEEEEEEEcccccEEEEEEEcccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEccEEEEEEEEEccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccEEEEEEEEEcccEEEEEEEEEccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEccEEEEEEEEEccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEcccccEEEEEHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHcccccccccccHEEEEHHHHHHHHcccccccEEEEEccccccccHcHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccEEEEEEEEEccccEEEEEEEEEccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEccEEEEEEEEEEcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHcHHcccccEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccEEEEEEEEEccccEEEEEEEEccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEccEEEEEEEEEEcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHcccccEEEccHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
msvrtygdkpisfqieengdfycigsevgnYLRMFRGslykkypglfrrTISNEERKRLLdtaginshcLASSVTLLKVSEVEDILEGNDEKYKAVSihteplvpresktkkavpwapslpnsshldavpqatpvnrnrvnqkkvrtfplcfddtdpscifenashteVLVPIRLDMEIEGQKLRDtftwnkngtvfsfcsletlitpEQFAEVLcddldlnpllfvPAIAQSIRqqtdafpaenlldevhDQRVVIKLNIHVGNTSLVDQIEwdmsekensAEKFAVRLCTELGLGGEFVTAIAYSIRGQLswhqrtyafseaplpvveapfrshsesdqwspflETLTDAEMEKKIRdqdrntresktkkavpwapslpnsshldavpqatpvnrnrvnqkkvrtfplcfddtdpscifenashteVLVPIRLDMEIEGQKLRDTFtwnknetlitPEQFAEVLcddldlnpllfvPAIAQSIRqqtdafpaenlldevhDQRVVIKLNIHVGNTSLVDQIEwdmsekensAEKFAVRLCTELGLGGEFVTAIAYSIRGQLswhqrtyafseaplpvveapfrshsesdqwspflETLTDAEMEKKIRDQDRNTRRMRRLANTTTGW
Flexible Loop (DISEMBL)
msvrtygdkpisfqieengdfYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTAGINSHCLASSVTLLKVSEVEDILegndekykavsihteplvpreskTKKAVPWapslpnsshldavpqatpvnrnrvnqkkVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPfrshsesdqwspFLETLTDAEMEKkirdqdrntresktkkavpwapslpnsshldavpqatpvnrnrvnqkkVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPfrshsesdqwspfletltdaemekkirdqdrntrrmrrlantttgw
Low Complexity Region (SEG)
MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEPLVPRESKTKKAVPWAPSLPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIRDQDRNTRESKTKKAVPWAPSLPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIrdqdrntrrmrrLANTTTGW
Disordered region (IsUnstruct)
**********ISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSI********************************************KKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSE**NSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVE*************************************************************************KVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSE**NSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVE************************************************
Disordered Region (DISOPRED)
*******DKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTAGINSHCLASSVTLLKVSEVE*******************************************DAVPQA**********************************TEVLVPIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKI**********************************************************************VLVPIRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAE*************************
Disordered Region (DISEMBL)
********KPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEPLV***********WAPSLPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAP*********WSPFLETLTDAEMEKK*******************APSLPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAP*********WSPFLETLTDAEMEKKIRDQDRNTRRMRRLANTTTGW
Disordered Region (DISPRO)
****TYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIHTE************************LDAVPQAT*************TFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIRDQD***************************PQA**************TFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIRDQD****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEPLVPRESKTKKAVPWAPSLPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIRDQDRNTRESKTKKAVPWAPSLPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIRDQDRNTRRMRRLANTTTGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	629	2.2.26 [Sep-21-2011]
Q5U379	373	SWI/SNF-related matrix-as	yes	N/A	0.567	0.957	0.691	1e-147
Q6DFM1	378	SWI/SNF-related matrix-as	yes	N/A	0.567	0.944	0.677	1e-146
Q6GQ82	378	SWI/SNF-related matrix-as	N/A	N/A	0.567	0.944	0.680	1e-146
Q5ZK40	386	SWI/SNF-related matrix-as	yes	N/A	0.567	0.924	0.670	1e-145
Q9Z0H3	385	SWI/SNF-related matrix-as	yes	N/A	0.562	0.919	0.669	1e-144
Q12824	385	SWI/SNF-related matrix-as	yes	N/A	0.562	0.919	0.669	1e-144
Q5BIN2	385	SWI/SNF-related matrix-as	yes	N/A	0.562	0.919	0.669	1e-144
O42467	373	SWI/SNF-related matrix-as	N/A	N/A	0.562	0.949	0.680	1e-144
Q09699	632	SWI/SNF chromatin-remodel	yes	N/A	0.292	0.291	0.333	2e-25
P18480	905	SWI/SNF chromatin-remodel	yes	N/A	0.330	0.229	0.319	3e-23

>sp|Q5U379|SNF5_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A OS=Danio rerio GN=smarcb1a PE=2 SV=1

 Score =  522 bits (1345), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/369 (69%), Positives = 297/369 (80%), Gaps = 12/369 (3%)

Query: 4   RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
           +TYG KPI FQ+EE+GDFY IGSEVGNYLRMFRGSLYK+YP L RR  + EERK+++ ++
Sbjct: 5   KTYGQKPIKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLSRRLATVEERKKIVASS 64

Query: 64  GINSHC-LASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKKAVPWAPSLP 121
             + +  LA+SVTLLK SEVE+I +G+DEKYKAVSI TEP    RE K K+   W P+LP
Sbjct: 65  HDHGYTTLATSVTLLKASEVEEIFDGHDEKYKAVSISTEPPAYLREQKAKRNSQWVPTLP 124

Query: 122 NSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIE 180
           NSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVLVPIRLDMEI+
Sbjct: 125 NSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQQEVLVPIRLDMEID 184

Query: 181 GQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDA 240
           GQKLRD FTWN N         E L+TPE FAE+LCDDLDL+PL FVPAIA +IRQQ ++
Sbjct: 185 GQKLRDAFTWNMN---------EKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQQIES 235

Query: 241 FPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEF 300
           +P +++LDE  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC+ELGLGGEF
Sbjct: 236 YPTDSILDEQMDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEF 295

Query: 301 VTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIRD 360
           VT IAYSIRGQLSWHQRTYAFSE PLP VE   R+  ++DQW P LETLTDAEMEKKIRD
Sbjct: 296 VTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRD 355

Query: 361 QDRNTRESK 369
           QDRNTR  +
Sbjct: 356 QDRNTRRMR 364

Involved in chromatin-remodeling. Part of a complex that opens the chromatin to facilitate the transcriptional machinery to access their targets. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR).
Danio rerio (taxid: 7955)

>sp|Q6DFM1|SNF5_XENTR SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus tropicalis GN=smarcb1 PE=2 SV=1

 Score =  519 bits (1336), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/372 (67%), Positives = 300/372 (80%), Gaps = 15/372 (4%)

Query: 4   RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
           +T+G KP+ FQ+EE+G++Y IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++ ++
Sbjct: 7   KTFGQKPVKFQLEEDGEYYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 66

Query: 64  -GINSH---CLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKKAVPWAP 118
            G   H    LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K+   W P
Sbjct: 67  HGKKYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNSQWVP 126

Query: 119 SLPNSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDM 177
           +LPNSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENA+ +EVLVPIRLDM
Sbjct: 127 TLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENAAQSEVLVPIRLDM 186

Query: 178 EIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQ 237
           EI+GQKLRD FTWN N         E L+TPE FAE+LCDDLDLNPL FVPAIA +IRQQ
Sbjct: 187 EIDGQKLRDAFTWNMN---------EKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQ 237

Query: 238 TDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLG 297
            +++P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC+ELGLG
Sbjct: 238 IESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 297

Query: 298 GEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKK 357
           GEFVT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLTDAEMEKK
Sbjct: 298 GEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKK 357

Query: 358 IRDQDRNTRESK 369
           IRDQDRNTR  +
Sbjct: 358 IRDQDRNTRRMR 369

Involved in chromatin-remodeling. Part of a complex that opens the chromatin to facilitate the transcriptional machinery to access their targets. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR).

Xenopus tropicalis (taxid: 8364)

>sp|Q6GQ82|SNF5_XENLA SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus laevis GN=smarcb1 PE=2 SV=1

 Score =  518 bits (1335), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/372 (68%), Positives = 299/372 (80%), Gaps = 15/372 (4%)

Query: 4   RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
           +T+G KP+ FQ+EE+GD+Y IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++ ++
Sbjct: 7   KTFGQKPVKFQLEEDGDYYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 66

Query: 64  -GINSH---CLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKKAVPWAP 118
            G   H    LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K+   W P
Sbjct: 67  HGKKYHGHTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNSQWVP 126

Query: 119 SLPNSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDM 177
           +LPNSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENA+  EVLVPIRLDM
Sbjct: 127 TLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENAAQPEVLVPIRLDM 186

Query: 178 EIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQ 237
           EI+GQKLRD FTWN N         E L+TPE FAE+LCDDLDLNPL FVPAIA +IRQQ
Sbjct: 187 EIDGQKLRDAFTWNMN---------EKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQ 237

Query: 238 TDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLG 297
            +++P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC+ELGLG
Sbjct: 238 IESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLG 297

Query: 298 GEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKK 357
           GEFVT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLTDAEMEKK
Sbjct: 298 GEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKK 357

Query: 358 IRDQDRNTRESK 369
           IRDQDRNTR  +
Sbjct: 358 IRDQDRNTRRMR 369

Involved in chromatin-remodeling. Part of a complex that opens the chromatin to facilitate the transcriptional machinery to access their targets. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex) and may play a role in neural development.

Xenopus laevis (taxid: 8355)

>sp|Q5ZK40|SNF5_CHICK SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Gallus gallus GN=SMARCB1 PE=2 SV=1

 Score =  515 bits (1326), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 254/379 (67%), Positives = 300/379 (79%), Gaps = 22/379 (5%)

Query: 4   RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
           +T+G KP+ FQ+EE+G+FY IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++ ++
Sbjct: 8   KTFGQKPVKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 67

Query: 64  GIN--SHC---------LASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTK 111
             N  SH          LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K
Sbjct: 68  HENQRSHSPRRYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAK 127

Query: 112 KAVPWAPSLPNSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVL 170
           +   W P+LPNSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVL
Sbjct: 128 RNNQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVL 187

Query: 171 VPIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAI 230
           VPIRLDMEI+GQKLRD FTWN N         E L+TPE F+E+LCDDLDLNPL FVPAI
Sbjct: 188 VPIRLDMEIDGQKLRDAFTWNMN---------EKLMTPEMFSEILCDDLDLNPLTFVPAI 238

Query: 231 AQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRL 290
           A +IRQQ +++P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++L
Sbjct: 239 ASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKL 298

Query: 291 CTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLT 350
           C+ELGLGGEFVT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLT
Sbjct: 299 CSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLT 358

Query: 351 DAEMEKKIRDQDRNTRESK 369
           DAEMEKKIRDQDRNTR  +
Sbjct: 359 DAEMEKKIRDQDRNTRRMR 377

Involved in chromatin-remodeling. Part of a complex that opens the chromatin to facilitate the transcriptional machinery to access their targets. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex) and may play a role in neural development.

Gallus gallus (taxid: 9031)

>sp|Q9Z0H3|SNF5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Mus musculus GN=Smarcb1 PE=1 SV=1

 Score =  513 bits (1321), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/375 (66%), Positives = 296/375 (78%), Gaps = 21/375 (5%)

Query: 4   RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL--- 60
           +T+G KP+ FQ+E++G+FY IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++   
Sbjct: 8   KTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 67

Query: 61  -------DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKK 112
                  +T       LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K+
Sbjct: 68  HGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR 127

Query: 113 AVPWAPSLPNSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLV 171
              W P+LPNSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVLV
Sbjct: 128 NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLV 187

Query: 172 PIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIA 231
           PIRLDMEI+GQKLRD FTWN N         E L+TPE F+E+LCDDLDLNPL FVPAIA
Sbjct: 188 PIRLDMEIDGQKLRDAFTWNMN---------EKLMTPEMFSEILCDDLDLNPLTFVPAIA 238

Query: 232 QSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLC 291
            +IRQQ +++P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC
Sbjct: 239 SAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLC 298

Query: 292 TELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTD 351
           +ELGLGGEFVT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLTD
Sbjct: 299 SELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTD 358

Query: 352 AEMEKKIRDQDRNTR 366
           AEMEKKIRDQDRNTR
Sbjct: 359 AEMEKKIRDQDRNTR 373

Core component of the BAF (SWI/SNF) complex. This ATP-dependent chromatin-remodeling complex plays important roles in cell proliferation and differentiation, in cellular antiviral activities and inhibition of tumor formation. The BAF complex is able to create a stable, altered form of chromatin that constrains fewer negative supercoils than normal. This change in supercoiling would be due to the conversion of up to one-half of the nucleosomes on polynucleosomal arrays into asymmetric structures, termed altosomes, each composed of 2 histones octamers. Stimulates in vitro the remodeling activity of SMARCA4/BRG1/BAF190A. Plays a key role in cell-cycle control and causes cell cycle arrest in G0/G1. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Mus musculus (taxid: 10090)

>sp|Q12824|SNF5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Homo sapiens GN=SMARCB1 PE=1 SV=2

 Score =  513 bits (1321), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/375 (66%), Positives = 296/375 (78%), Gaps = 21/375 (5%)

Query: 4   RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL--- 60
           +T+G KP+ FQ+E++G+FY IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++   
Sbjct: 8   KTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 67

Query: 61  -------DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKK 112
                  +T       LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K+
Sbjct: 68  HGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR 127

Query: 113 AVPWAPSLPNSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLV 171
              W P+LPNSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVLV
Sbjct: 128 NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLV 187

Query: 172 PIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIA 231
           PIRLDMEI+GQKLRD FTWN N         E L+TPE F+E+LCDDLDLNPL FVPAIA
Sbjct: 188 PIRLDMEIDGQKLRDAFTWNMN---------EKLMTPEMFSEILCDDLDLNPLTFVPAIA 238

Query: 232 QSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLC 291
            +IRQQ +++P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC
Sbjct: 239 SAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLC 298

Query: 292 TELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTD 351
           +ELGLGGEFVT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLTD
Sbjct: 299 SELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTD 358

Query: 352 AEMEKKIRDQDRNTR 366
           AEMEKKIRDQDRNTR
Sbjct: 359 AEMEKKIRDQDRNTR 373

Core component of the BAF (hSWI/SNF) complex. This ATP-dependent chromatin-remodeling complex plays important roles in cell proliferation and differentiation, in cellular antiviral activities and inhibition of tumor formation. The BAF complex is able to create a stable, altered form of chromatin that constrains fewer negative supercoils than normal. This change in supercoiling would be due to the conversion of up to one-half of the nucleosomes on polynucleosomal arrays into asymmetric structures, termed altosomes, each composed of 2 histones octamers. Stimulates in vitro the remodeling activity of SMARCA4/BRG1/BAF190A. Involved in activation of CSF1 promoter. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Plays a key role in cell-cycle control and causes cell cycle arrest in G0/G1. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene.

Homo sapiens (taxid: 9606)

>sp|Q5BIN2|SNF5_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Bos taurus GN=SMARCB1 PE=2 SV=1

 Score =  512 bits (1319), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/375 (66%), Positives = 297/375 (79%), Gaps = 21/375 (5%)

Query: 4   RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
           +T+G KP+ FQ+E++G+FY IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++ ++
Sbjct: 8   KTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 67

Query: 64  -------GINSH---CLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKK 112
                      H    LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K+
Sbjct: 68  HGKKTKPNAKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR 127

Query: 113 AVPWAPSLPNSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLV 171
              W P+LPNSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVLV
Sbjct: 128 NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLV 187

Query: 172 PIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIA 231
           PIRLDMEI+GQKLRD FTWN N         E L+TPE F+E+LCDDLDLNPL FVPAIA
Sbjct: 188 PIRLDMEIDGQKLRDAFTWNMN---------EKLMTPEMFSEILCDDLDLNPLTFVPAIA 238

Query: 232 QSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLC 291
            +IRQQ +++P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC
Sbjct: 239 SAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLC 298

Query: 292 TELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTD 351
           +ELGLGGEFVT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLTD
Sbjct: 299 SELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTD 358

Query: 352 AEMEKKIRDQDRNTR 366
           AEMEKKIRDQDRNTR
Sbjct: 359 AEMEKKIRDQDRNTR 373

Core component of the BAF (SWI/SNF) complex. This ATP-dependent chromatin-remodeling complex plays important roles in cell proliferation and differentiation, in cellular antiviral activities and inhibition of tumor formation. The BAF complex is able to create a stable, altered form of chromatin that constrains fewer negative supercoils than normal. This change in supercoiling would be due to the conversion of up to one-half of the nucleosomes on polynucleosomal arrays into asymmetric structures, termed altosomes, each composed of 2 histones octamers. Stimulates in vitro the remodeling activity of SMARCA4/BRG1/BAF190A. Plays a key role in cell-cycle control and causes cell cycle arrest in G0/G1. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Bos taurus (taxid: 9913)

>sp|O42467|SNF5_TETFL SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Tetraodon fluviatilis GN=smarcb1 PE=3 SV=1

 Score =  511 bits (1317), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/366 (68%), Positives = 293/366 (80%), Gaps = 12/366 (3%)

Query: 4   RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
           + +G KP+ FQ+E+ GDFY IGSEVGNYLRMFRGSLYK+YP L+R+  S EERK++++++
Sbjct: 5   KAFGQKPVKFQLEDGGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKIVESS 64

Query: 64  GINSHC-LASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKKAVPWAPSLP 121
             + +  LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K+   W P+LP
Sbjct: 65  HDHGYTQLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPAYLREQKAKRNSQWVPTLP 124

Query: 122 NSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIE 180
           NSSH LDAVP +T +NR+R+ + K RTFPLCFDD DP+ I ENAS +EVLVPIRLDMEIE
Sbjct: 125 NSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENASQSEVLVPIRLDMEIE 184

Query: 181 GQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDA 240
           GQKLRD FTWN N         E L+TPE FAE+LCDDLDLNPL FVPAI  +IRQQ ++
Sbjct: 185 GQKLRDAFTWNMN---------EKLMTPEMFAEILCDDLDLNPLAFVPAIPSAIRQQIES 235

Query: 241 FPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEF 300
           +P + +L+E  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC+ELG GGEF
Sbjct: 236 YPTDAILEEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGQGGEF 295

Query: 301 VTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIRD 360
           VT IAYSIRGQLSWHQ+ YAFSE PLP VE   R+   +DQW P LETLTDAEMEKKIRD
Sbjct: 296 VTTIAYSIRGQLSWHQKAYAFSENPLPTVEIAIRNTGAADQWCPLLETLTDAEMEKKIRD 355

Query: 361 QDRNTR 366
           QDRNTR
Sbjct: 356 QDRNTR 361

Involved in chromatin-remodeling. Part of a complex that opens the chromatin to facilitate the transcriptional machinery to access their targets. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex) and may play a role in neural development.

Tetraodon fluviatilis (taxid: 47145)

>sp|Q09699|SNF5_SCHPO SWI/SNF chromatin-remodeling complex subunit snf5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf5 PE=1 SV=1

 Score =  117 bits (294), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 53/237 (22%)

Query: 430 LVPIRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLD--LNPLLFVPAIAQSIRQ 487
           LVPIRL+++ +  KLRD+FTWN  +  I+ +QFAE +C D D  L+ +  V  I++SI+ 
Sbjct: 141 LVPIRLEIDADRYKLRDSFTWNLYDKCISLDQFAEQICIDYDIPLHNVHIVQNISKSIQA 200

Query: 488 QTDAF---------------------------PAENLLDEV--------HDQRVVIKLNI 512
           Q + +                           P+++L            +D R++IKL+I
Sbjct: 201 QINDYEPRKAQSNLSFVSDVSSSTSETVYAHEPSDSLAKASKQQIPTVQNDLRILIKLDI 260

Query: 513 HVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQR---- 568
            +G  +L+DQ EW++   E+SAE+FA  +C +LGL GEF TA+A+SIR Q   + +    
Sbjct: 261 TIGRLNLIDQFEWNLFAPESSAEEFATVMCLDLGLSGEFCTAVAHSIREQCQMYIKYLSL 320

Query: 569 -TYAFSEAP----------LPVVEAPFR-SHSESDQWSPFLETLTDAEMEKKIRDQD 613
             Y F  +           LP ++   R S  ES  ++P +  L DAEME++ R  D
Sbjct: 321 IGYLFDGSEIEDEEVRSYILPPLKNTLRFSDMESSSFAPMIYELNDAEMERQDRGYD 377

Component of the SWI/SNF complex, an ATP-dependent chromatin remodeling complex, required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P18480|SNF5_YEAST SWI/SNF chromatin-remodeling complex subunit SNF5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF5 PE=1 SV=3

 Score =  110 bits (275), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 39/247 (15%)

Query: 389 VPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEGQK--LRD 446
           +PQ    NR    + K++ +    ++T           +E LVPIRL+ + +  +  LRD
Sbjct: 427 IPQVEVGNRKHYLEDKLKVYKQAMNET-----------SEQLVPIRLEFDQDRDRFFLRD 475

Query: 447 TFTWNKNETLITPEQFAEVLCDDL---DLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHD 503
           T  WNKN+ LI  E F + +  D    D      +  I QSI++Q   F     ++   D
Sbjct: 476 TLLWNKNDKLIKIEDFVDDMLRDYRFEDATREQHIDTICQSIQEQIQEFQGNPYIELNQD 535

Query: 504 Q------RVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAY 557
           +      R+ IKL+I VG   L+DQ EWD+S  +N  E+FA  +C EL L GEFVTAIA+
Sbjct: 536 RLGGDDLRIRIKLDIVVGQNQLIDQFEWDISNSDNCPEEFAESMCQELELPGEFVTAIAH 595

Query: 558 SIRGQLSWHQRT-----YAFSEA------------PLPVVEAPFRSHSESDQWSPFLETL 600
           SIR Q+  + ++     Y F  +            P   ++  +R  +ES  ++P L  +
Sbjct: 596 SIREQVHMYHKSLALLGYNFDGSAIEDDDIRSRMLPTITLDDVYRPAAESKIFTPNLLQI 655

Query: 601 TDAEMEK 607
           + AE+E+
Sbjct: 656 SAAELER 662

Involved in transcriptional activation. Component of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
328705925	375	PREDICTED: SWI/SNF-related matrix-associ	0.570	0.957	0.791	1e-175
328705929	369	PREDICTED: SWI/SNF-related matrix-associ	0.570	0.972	0.791	1e-175
340710344	369	PREDICTED: SWI/SNF-related matrix-associ	0.570	0.972	0.778	1e-173
242009928	366	snf5, putative [Pediculus humanus corpor	0.565	0.972	0.784	1e-173
66504971	369	PREDICTED: SWI/SNF-related matrix-associ	0.570	0.972	0.778	1e-172
307206506	369	SWI/SNF-related matrix-associated actin-	0.570	0.972	0.775	1e-172
307181132	369	SWI/SNF-related matrix-associated actin-	0.570	0.972	0.775	1e-172
380014716	369	PREDICTED: LOW QUALITY PROTEIN: SWI/SNF-	0.570	0.972	0.775	1e-172
156549529	369	PREDICTED: SWI/SNF-related matrix-associ	0.570	0.972	0.775	1e-171
91084969	371	PREDICTED: similar to AGAP001154-PA [Tri	0.565	0.959	0.772	1e-170

>gi|328705925|ref|XP_003242946.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform 2 [Acyrthosiphon pisum] gi|328705927|ref|XP_001944745.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform 1 [Acyrthosiphon pisum]

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 293/370 (79%), Positives = 335/370 (90%), Gaps = 11/370 (2%)

Query: 1   MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL 60
           M++RTYGDKPISFQ+EENG++YCIGSEVGNYLR+FRGSLYK+YPG+FRRTI+N+ERKRL+
Sbjct: 1   MALRTYGDKPISFQVEENGEYYCIGSEVGNYLRLFRGSLYKRYPGMFRRTITNDERKRLI 60

Query: 61  DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSI-HTEPLVPRESKTKKAVPWAPS 119
           D  G+++HCLASSV+LL+ SEVEDI++GNDE+YKAVS+  TEPL+ RESK KK+VPW PS
Sbjct: 61  DL-GLSAHCLASSVSLLRASEVEDIIDGNDERYKAVSVTSTEPLITRESKGKKSVPWVPS 119

Query: 120 LPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEI 179
           LPNSSHLDAVPQATP+NRNR+ QKKVRTFPLC+DDTDP+ I ENA+ +E+LVPIRLDMEI
Sbjct: 120 LPNSSHLDAVPQATPINRNRIIQKKVRTFPLCYDDTDPANIHENANFSELLVPIRLDMEI 179

Query: 180 EGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239
           EGQKLRDTFTWNKN         E+LITPEQFAEVLCDDLDLNPL FVPAIAQSIRQQ +
Sbjct: 180 EGQKLRDTFTWNKN---------ESLITPEQFAEVLCDDLDLNPLPFVPAIAQSIRQQIE 230

Query: 240 AFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGE 299
           AF  +N+LDE HDQRV+IKLNIHVGNTSLVDQ+EWDM EK+NS E+FA++LC ELGLGGE
Sbjct: 231 AFTNDNILDEQHDQRVIIKLNIHVGNTSLVDQVEWDMGEKDNSPEQFAMKLCAELGLGGE 290

Query: 300 FVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIR 359
           FVTAIAYSIRGQLSWHQRTYAFSEAPL VVE PFR  S++DQWSPFLETLTDAEMEKKIR
Sbjct: 291 FVTAIAYSIRGQLSWHQRTYAFSEAPLSVVETPFRPPSDADQWSPFLETLTDAEMEKKIR 350

Query: 360 DQDRNTRESK 369
           DQDRNTR  +
Sbjct: 351 DQDRNTRRMR 360

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705929|ref|XP_003242947.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform 3 [Acyrthosiphon pisum] gi|328705931|ref|XP_003242948.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform 4 [Acyrthosiphon pisum]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 293/370 (79%), Positives = 335/370 (90%), Gaps = 11/370 (2%)

Query: 1   MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL 60
           M++RTYGDKPISFQ+EENG++YCIGSEVGNYLR+FRGSLYK+YPG+FRRTI+N+ERKRL+
Sbjct: 1   MALRTYGDKPISFQVEENGEYYCIGSEVGNYLRLFRGSLYKRYPGMFRRTITNDERKRLI 60

Query: 61  DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSI-HTEPLVPRESKTKKAVPWAPS 119
           D  G+++HCLASSV+LL+ SEVEDI++GNDE+YKAVS+  TEPL+ RESK KK+VPW PS
Sbjct: 61  DL-GLSAHCLASSVSLLRASEVEDIIDGNDERYKAVSVTSTEPLITRESKGKKSVPWVPS 119

Query: 120 LPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEI 179
           LPNSSHLDAVPQATP+NRNR+ QKKVRTFPLC+DDTDP+ I ENA+ +E+LVPIRLDMEI
Sbjct: 120 LPNSSHLDAVPQATPINRNRIIQKKVRTFPLCYDDTDPANIHENANFSELLVPIRLDMEI 179

Query: 180 EGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239
           EGQKLRDTFTWNKN         E+LITPEQFAEVLCDDLDLNPL FVPAIAQSIRQQ +
Sbjct: 180 EGQKLRDTFTWNKN---------ESLITPEQFAEVLCDDLDLNPLPFVPAIAQSIRQQIE 230

Query: 240 AFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGE 299
           AF  +N+LDE HDQRV+IKLNIHVGNTSLVDQ+EWDM EK+NS E+FA++LC ELGLGGE
Sbjct: 231 AFTNDNILDEQHDQRVIIKLNIHVGNTSLVDQVEWDMGEKDNSPEQFAMKLCAELGLGGE 290

Query: 300 FVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIR 359
           FVTAIAYSIRGQLSWHQRTYAFSEAPL VVE PFR  S++DQWSPFLETLTDAEMEKKIR
Sbjct: 291 FVTAIAYSIRGQLSWHQRTYAFSEAPLSVVETPFRPPSDADQWSPFLETLTDAEMEKKIR 350

Query: 360 DQDRNTRESK 369
           DQDRNTR  +
Sbjct: 351 DQDRNTRRMR 360

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710344|ref|XP_003393752.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like [Bombus terrestris] gi|350415889|ref|XP_003490780.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like [Bombus impatiens] gi|383852860|ref|XP_003701943.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like [Megachile rotundata]

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 288/370 (77%), Positives = 331/370 (89%), Gaps = 11/370 (2%)

Query: 1   MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL 60
           M++RTYGDKPISFQ+EENG++YCIGSEVGNYLR+FRGSLYK+YPG+FRR+I+N+ERK+L+
Sbjct: 1   MALRTYGDKPISFQVEENGEYYCIGSEVGNYLRLFRGSLYKRYPGMFRRSITNDERKKLV 60

Query: 61  DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIH-TEPLVPRESKTKKAVPWAPS 119
           +  G++ H LASSV+LL+ SEVEDI+EGND+KYKAVS+H TEP  PRE K+KK++PW PS
Sbjct: 61  EL-GLSQHVLASSVSLLRASEVEDIIEGNDDKYKAVSVHSTEPPAPREGKSKKSMPWVPS 119

Query: 120 LPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEI 179
           LPNSSHLDAVPQATP+NRNRV+ KKVRTFPLCFDDTDPS   ENA+  E+LVPIRLDMEI
Sbjct: 120 LPNSSHLDAVPQATPINRNRVHNKKVRTFPLCFDDTDPSANLENAAQQEMLVPIRLDMEI 179

Query: 180 EGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239
           EGQKLRDTFTWNKN         E+LITPEQFAEVLCDDLDLNPL FVPAIAQ+IRQQ +
Sbjct: 180 EGQKLRDTFTWNKN---------ESLITPEQFAEVLCDDLDLNPLTFVPAIAQAIRQQIE 230

Query: 240 AFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGE 299
           AFP E +L++  DQRV+IKLNIHVGNTSLVDQ+EWDMSEKEN+ EKFA++LC ELGLGGE
Sbjct: 231 AFPQETILEDQCDQRVIIKLNIHVGNTSLVDQVEWDMSEKENNPEKFAMKLCAELGLGGE 290

Query: 300 FVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIR 359
           FVTAIAYS+RGQLSWHQRTYAFSEAPLP VE PFR  SE+DQW+PFLETLTDAEMEKKIR
Sbjct: 291 FVTAIAYSVRGQLSWHQRTYAFSEAPLPTVEVPFRPPSEADQWAPFLETLTDAEMEKKIR 350

Query: 360 DQDRNTRESK 369
           DQDRNTR  +
Sbjct: 351 DQDRNTRRMR 360

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009928|ref|XP_002425734.1| snf5, putative [Pediculus humanus corporis] gi|212509635|gb|EEB12996.1| snf5, putative [Pediculus humanus corporis]

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 288/367 (78%), Positives = 330/367 (89%), Gaps = 11/367 (2%)

Query: 1   MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL 60
           M+++TYGDKP+SFQIEENG++YCIGSEVGNYLR+FRGSLYK+YPGL+RR ++ +ERKR+L
Sbjct: 1   MALKTYGDKPVSFQIEENGEYYCIGSEVGNYLRLFRGSLYKRYPGLYRRNLTVDERKRVL 60

Query: 61  DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIHT-EPLVPRESKTKKAVPWAPS 119
           D  G+++HCLASSV+LL+ SEVEDI++GNDEKYKAVSIHT E ++P  SK+KK++PW P+
Sbjct: 61  DL-GVSNHCLASSVSLLRASEVEDIIDGNDEKYKAVSIHTTEIVMPASSKSKKSMPWVPN 119

Query: 120 LPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEI 179
           LPNSSHLDAVPQATP+NRNRV  KKVRTFPLCFDD+DP+ + ENAS TEVLVPIRLDMEI
Sbjct: 120 LPNSSHLDAVPQATPINRNRVQNKKVRTFPLCFDDSDPNIVHENASQTEVLVPIRLDMEI 179

Query: 180 EGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239
           EGQKLRDTFTWNKN         ETLITPEQFAEVLCDDLDLNP+ FVPAIAQ+IRQQ D
Sbjct: 180 EGQKLRDTFTWNKN---------ETLITPEQFAEVLCDDLDLNPIAFVPAIAQAIRQQLD 230

Query: 240 AFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGE 299
           AFP +N+L E  DQRV++KLNIHVGNTSLVDQ+EWDMSEKENS E FA +LC ELGLGGE
Sbjct: 231 AFPTDNILSEQFDQRVIVKLNIHVGNTSLVDQVEWDMSEKENSPEMFAQKLCAELGLGGE 290

Query: 300 FVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIR 359
           FVTAIAYSIRGQ++WHQRTYAFSEAPLPVVE P+R  SESDQW+PFLETLTDAEMEKKIR
Sbjct: 291 FVTAIAYSIRGQITWHQRTYAFSEAPLPVVEVPYRPPSESDQWAPFLETLTDAEMEKKIR 350

Query: 360 DQDRNTR 366
           DQDRNTR
Sbjct: 351 DQDRNTR 357

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66504971|ref|XP_393072.2| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 [Apis mellifera]

 Score =  613 bits (1580), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 288/370 (77%), Positives = 331/370 (89%), Gaps = 11/370 (2%)

Query: 1   MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL 60
           M++RTYGDKPISFQ+EENG++YCIGSEVGNYLR+FRGSLYK+YPG+FRR+I+N+ERK+L+
Sbjct: 1   MALRTYGDKPISFQVEENGEYYCIGSEVGNYLRLFRGSLYKRYPGMFRRSITNDERKKLV 60

Query: 61  DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIH-TEPLVPRESKTKKAVPWAPS 119
           +  G++ H LASSV+LL+ SEVEDI+EGND+KYKAVS+H TEP  PRE K+KK++PW PS
Sbjct: 61  EL-GLSQHVLASSVSLLRASEVEDIIEGNDDKYKAVSVHSTEPPAPREGKSKKSMPWVPS 119

Query: 120 LPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEI 179
           LPNSSHLDAVPQATP+NRNRV+ KKVRTFPLCFDDTDPS   ENA+  E+LVPIRLDMEI
Sbjct: 120 LPNSSHLDAVPQATPINRNRVHNKKVRTFPLCFDDTDPSANLENAAQQEMLVPIRLDMEI 179

Query: 180 EGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239
           EGQKLRDTFTWNKN         E+LITPEQFAEVLCDDLDLNPL FVPAIAQ+IRQQ +
Sbjct: 180 EGQKLRDTFTWNKN---------ESLITPEQFAEVLCDDLDLNPLSFVPAIAQAIRQQIE 230

Query: 240 AFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGE 299
           AFP E +L++  DQRV+IKLNIHVGNTSLVDQ+EWDMSEKEN+ EKFA++LC ELGLGGE
Sbjct: 231 AFPQETILEDQCDQRVIIKLNIHVGNTSLVDQVEWDMSEKENNPEKFAMKLCAELGLGGE 290

Query: 300 FVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIR 359
           FVTAIAYS+RGQLSWHQRTYAFSEAPLP VE PFR  SE+DQW+PFLETLTDAEMEKKIR
Sbjct: 291 FVTAIAYSVRGQLSWHQRTYAFSEAPLPTVEVPFRPPSEADQWAPFLETLTDAEMEKKIR 350

Query: 360 DQDRNTRESK 369
           DQDRNTR  +
Sbjct: 351 DQDRNTRRMR 360

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206506|gb|EFN84532.1| SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 [Harpegnathos saltator]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 287/370 (77%), Positives = 330/370 (89%), Gaps = 11/370 (2%)

Query: 1   MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL 60
           M++RTYGDKPISFQ+EENG++YCIGSEVGNYLR+FRGSLYK+YPG++RR+I+N+ERK+L+
Sbjct: 1   MALRTYGDKPISFQVEENGEYYCIGSEVGNYLRLFRGSLYKRYPGMYRRSITNDERKKLV 60

Query: 61  DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIH-TEPLVPRESKTKKAVPWAPS 119
           +  G++ H LASSV+LL+ SEVEDI+EGND+KYKAVS+H TEP  PRE KTKK++ W PS
Sbjct: 61  EL-GLSQHVLASSVSLLRASEVEDIIEGNDDKYKAVSVHSTEPPAPREGKTKKSMAWVPS 119

Query: 120 LPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEI 179
           LPNSSHLDAVPQATP+NRNRV+ KKVRTFPLCFDDTDPS   ENA+  E+LVPIRLDMEI
Sbjct: 120 LPNSSHLDAVPQATPINRNRVHNKKVRTFPLCFDDTDPSANLENAAQQEMLVPIRLDMEI 179

Query: 180 EGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239
           EGQKLRDTFTWNKN         E+LITPEQFAEVLCDDLDLNPL FVPAIAQ+IRQQ +
Sbjct: 180 EGQKLRDTFTWNKN---------ESLITPEQFAEVLCDDLDLNPLTFVPAIAQAIRQQIE 230

Query: 240 AFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGE 299
           AFP E +L++  DQRV+IKLNIHVGNTSLVDQ+EWDMSEKEN+ EKFA++LC ELGLGGE
Sbjct: 231 AFPQETILEDQCDQRVIIKLNIHVGNTSLVDQVEWDMSEKENNPEKFAMKLCAELGLGGE 290

Query: 300 FVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIR 359
           FVTAIAYS+RGQLSWHQRTYAFSEAPLP VE PFR  SE+DQW+PFLETLTDAEMEKKIR
Sbjct: 291 FVTAIAYSVRGQLSWHQRTYAFSEAPLPTVEVPFRPPSEADQWAPFLETLTDAEMEKKIR 350

Query: 360 DQDRNTRESK 369
           DQDRNTR  +
Sbjct: 351 DQDRNTRRMR 360

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181132|gb|EFN68863.1| SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 [Camponotus floridanus] gi|322783269|gb|EFZ10853.1| hypothetical protein SINV_06600 [Solenopsis invicta] gi|332016251|gb|EGI57164.1| SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 [Acromyrmex echinatior]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 287/370 (77%), Positives = 330/370 (89%), Gaps = 11/370 (2%)

Query: 1   MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL 60
           M++RTYGDKPISFQ+EENG++YCIGSEVGNYLR+FRGSLYK+YPG+FRR+I+N+ERK+L+
Sbjct: 1   MALRTYGDKPISFQVEENGEYYCIGSEVGNYLRLFRGSLYKRYPGMFRRSITNDERKKLV 60

Query: 61  DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIH-TEPLVPRESKTKKAVPWAPS 119
           +  G++ H LASSV+LL+ SEVEDI+EGND+KYKAVS+H TEP  PRE K+KK++ W PS
Sbjct: 61  EL-GLSQHVLASSVSLLRASEVEDIIEGNDDKYKAVSVHSTEPPAPREGKSKKSMAWVPS 119

Query: 120 LPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEI 179
           LPNSSHLDAVPQATP+NRNRV+ KKVRTFPLCFDDTDPS   ENA+  E+LVPIRLDMEI
Sbjct: 120 LPNSSHLDAVPQATPINRNRVHNKKVRTFPLCFDDTDPSANLENAAQQEMLVPIRLDMEI 179

Query: 180 EGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239
           EGQKLRDTFTWNKN         E+LITPEQFAEVLCDDLDLNPL FVPAIAQ+IRQQ +
Sbjct: 180 EGQKLRDTFTWNKN---------ESLITPEQFAEVLCDDLDLNPLTFVPAIAQAIRQQIE 230

Query: 240 AFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGE 299
           AFP E +L++  DQRV+IKLNIHVGNTSLVDQ+EWDMSEKEN+ EKFA++LC ELGLGGE
Sbjct: 231 AFPQETILEDQCDQRVIIKLNIHVGNTSLVDQVEWDMSEKENNPEKFAMKLCAELGLGGE 290

Query: 300 FVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIR 359
           FVTAIAYS+RGQLSWHQRTYAFSEAPLP VE PFR  SE+DQW+PFLETLTDAEMEKKIR
Sbjct: 291 FVTAIAYSVRGQLSWHQRTYAFSEAPLPTVEVPFRPPSEADQWAPFLETLTDAEMEKKIR 350

Query: 360 DQDRNTRESK 369
           DQDRNTR  +
Sbjct: 351 DQDRNTRRMR 360

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014716|ref|XP_003691366.1| PREDICTED: LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like [Apis florea]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 287/370 (77%), Positives = 330/370 (89%), Gaps = 11/370 (2%)

Query: 1   MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL 60
           M++RTYGDKPISFQ+EENG++YCIGSEVGNYLR+FRGSLYK+YPG+FRR+I+N+ERK+L+
Sbjct: 1   MALRTYGDKPISFQVEENGEYYCIGSEVGNYLRLFRGSLYKRYPGMFRRSITNDERKKLV 60

Query: 61  DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIH-TEPLVPRESKTKKAVPWAPS 119
           +  G++ H LASSV+LL+ SEVEDI+EGND+KYKAVS+H TEP  PRE K+KK++PW PS
Sbjct: 61  EL-GLSQHVLASSVSLLRASEVEDIIEGNDDKYKAVSVHSTEPPAPREGKSKKSMPWVPS 119

Query: 120 LPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEI 179
           LPNSSHLDAVPQATP+NRNRV+ KKVRT PLCFDDTDPS   ENA+  E+LVPIRLDMEI
Sbjct: 120 LPNSSHLDAVPQATPINRNRVHNKKVRTXPLCFDDTDPSANLENAAQQEMLVPIRLDMEI 179

Query: 180 EGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239
           EGQKLRDTFTWNKN         E+LITPEQFAEVLCDDLDLNPL FVPAIAQ+IRQQ +
Sbjct: 180 EGQKLRDTFTWNKN---------ESLITPEQFAEVLCDDLDLNPLSFVPAIAQAIRQQIE 230

Query: 240 AFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGE 299
           AFP E +L++  DQRV+IKLNIHVGNTSLVDQ+EWDMSEKEN+ EKFA++LC ELGLGGE
Sbjct: 231 AFPQETILEDQCDQRVIIKLNIHVGNTSLVDQVEWDMSEKENNPEKFAMKLCAELGLGGE 290

Query: 300 FVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIR 359
           FVTAIAYS+RGQLSWHQRTYAFSEAPLP VE PFR  SE+DQW+PFLETLTDAEMEKKIR
Sbjct: 291 FVTAIAYSVRGQLSWHQRTYAFSEAPLPTVEVPFRPPSEADQWAPFLETLTDAEMEKKIR 350

Query: 360 DQDRNTRESK 369
           DQDRNTR  +
Sbjct: 351 DQDRNTRRMR 360

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549529|ref|XP_001601881.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 [Nasonia vitripennis]

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 287/370 (77%), Positives = 328/370 (88%), Gaps = 11/370 (2%)

Query: 1   MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL 60
           M++RTYGDKPISFQ+EENG++YCIGSEVGNYLR+FRGSLYK+YPG++RR+I+N+ERK+L+
Sbjct: 1   MALRTYGDKPISFQVEENGEYYCIGSEVGNYLRLFRGSLYKRYPGMYRRSITNDERKKLV 60

Query: 61  DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIH-TEPLVPRESKTKKAVPWAPS 119
           +  G++ H LASSV+LL+ SEVEDI+EGNDEKYKAVS+H TEP  PRE KTKK + W PS
Sbjct: 61  EL-GLSQHVLASSVSLLRASEVEDIIEGNDEKYKAVSVHSTEPPAPREGKTKKPMSWVPS 119

Query: 120 LPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEI 179
           LPNSSHLDAVPQATP+NRNRV+ KKVRTFPLC+DDTDPS   ENA+  EVLVPIRLDMEI
Sbjct: 120 LPNSSHLDAVPQATPINRNRVHNKKVRTFPLCYDDTDPSANLENAAQHEVLVPIRLDMEI 179

Query: 180 EGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239
           EGQKLRDTFTWNKN         E+LITPEQFAEVLCDDLDLNPL FVPAIAQ+IRQQ +
Sbjct: 180 EGQKLRDTFTWNKN---------ESLITPEQFAEVLCDDLDLNPLTFVPAIAQAIRQQIE 230

Query: 240 AFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGE 299
           AFP E +L+E  DQRV+IKLNIHVGNTSLVDQ+EWDMSEKEN+ EKFA++LC ELGLGGE
Sbjct: 231 AFPQEAILEEACDQRVIIKLNIHVGNTSLVDQVEWDMSEKENNPEKFAMKLCAELGLGGE 290

Query: 300 FVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIR 359
           FVTAIAYS+RGQLSWHQRTYAFSEAPLP VE PFR  SE++ W+PFLETLTDAEMEKKIR
Sbjct: 291 FVTAIAYSVRGQLSWHQRTYAFSEAPLPTVEVPFRPPSEAELWAPFLETLTDAEMEKKIR 350

Query: 360 DQDRNTRESK 369
           DQDRNTR  +
Sbjct: 351 DQDRNTRRMR 360

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084969|ref|XP_972023.1| PREDICTED: similar to AGAP001154-PA [Tribolium castaneum] gi|270009005|gb|EFA05453.1| hypothetical protein TcasGA2_TC015634 [Tribolium castaneum]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/369 (77%), Positives = 331/369 (89%), Gaps = 13/369 (3%)

Query: 1   MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL 60
           M++RT+G+KPI+FQ+EENG++YC+GSEVGNYLR+FRGSLYKKYPG++RR+I+NEERKRL+
Sbjct: 1   MALRTFGEKPITFQLEENGEYYCVGSEVGNYLRLFRGSLYKKYPGMYRRSITNEERKRLI 60

Query: 61  DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIHT-EPLVPRESKTKKAVPWAPS 119
           +  G++ H LASSV+LL+ SEVEDI+EGNDEKYKAVS+HT +P +PRESK+KK++ W PS
Sbjct: 61  EL-GLSQHVLASSVSLLRASEVEDIIEGNDEKYKAVSVHTSDPPMPRESKSKKSMQWVPS 119

Query: 120 LPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEI 179
           LPNSSHLDAVPQATP+NRNRV  KKVRTFPLCFDDTDP    +NA+  E+LVPIRLDMEI
Sbjct: 120 LPNSSHLDAVPQATPINRNRVAAKKVRTFPLCFDDTDPELNMQNAAQGELLVPIRLDMEI 179

Query: 180 EGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239
           EGQKLRDTFTWNKN         E+LITPEQFAEVLCDDLDLNPL FVPAIAQ+IRQQ D
Sbjct: 180 EGQKLRDTFTWNKN---------ESLITPEQFAEVLCDDLDLNPLTFVPAIAQAIRQQLD 230

Query: 240 AFPAE--NLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLG 297
           AFPAE   +++E  DQRV+IKLNIHVGNTSLVDQ+EWDMSEK+N+ E+FA+ LC+ELGLG
Sbjct: 231 AFPAEPSGIIEEGSDQRVIIKLNIHVGNTSLVDQVEWDMSEKQNNPEEFALTLCSELGLG 290

Query: 298 GEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKK 357
           GEFVTAIAYSIRGQLSWHQRTYA+SEAPLP VE PFR+ SESDQW+PFLETLTDAEMEKK
Sbjct: 291 GEFVTAIAYSIRGQLSWHQRTYAYSEAPLPTVEVPFRTPSESDQWAPFLETLTDAEMEKK 350

Query: 358 IRDQDRNTR 366
           IRDQDRNTR
Sbjct: 351 IRDQDRNTR 359

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
FB|FBgn0011715	370	Snr1 "Snf5-related 1" [Drosoph	0.570	0.970	0.706	3.7e-142
ZFIN|ZDB-GENE-041114-5	373	smarcb1a "SWI/SNF related, mat	0.567	0.957	0.691	3.8e-133
RGD|1308761	376	Smarcb1 "SWI/SNF related, matr	0.567	0.949	0.677	2.1e-132
UNIPROTKB|Q5ZK40	386	SMARCB1 "SWI/SNF-related matri	0.567	0.924	0.670	2.4e-131
ZFIN|ZDB-GENE-991008-16	382	smarcb1b "SWI/SNF related, mat	0.558	0.918	0.688	3.9e-131
UNIPROTKB|Q5BIN2	385	SMARCB1 "SWI/SNF-related matri	0.567	0.927	0.664	1e-130
UNIPROTKB|E2RMD3	385	SMARCB1 "Uncharacterized prote	0.567	0.927	0.664	1e-130
UNIPROTKB|Q12824	385	SMARCB1 "SWI/SNF-related matri	0.567	0.927	0.664	1e-130
UNIPROTKB|F2Z4X9	385	SMARCB1 "Uncharacterized prote	0.567	0.927	0.664	1e-130
MGI|MGI:1328366	385	Smarcb1 "SWI/SNF related, matr	0.567	0.927	0.664	1e-130

FB|FBgn0011715 Snr1 "Snf5-related 1" [Drosophila melanogaster (taxid:7227)]

 Score = 1390 (494.4 bits), Expect = 3.7e-142, P = 3.7e-142
 Identities = 262/371 (70%), Positives = 316/371 (85%)

Query:     1 MSVRTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLL 60
             M+++TYGDKP++FQ+EE G++Y +GSEVGNY+R FRG LYKKYPG+ R  +SNEERKRL 
Sbjct:     1 MALQTYGDKPVAFQLEEGGEYYYVGSEVGNYMRHFRGILYKKYPGMTRIVLSNEERKRLA 60

Query:    61 DTAGINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEPL-VPRESKTKKAVPWAPS 119
             ++ G++SH LASSV+LL+  EV+DI+ GNDEKY+AVS++T    VPRESK+KK   + P+
Sbjct:    61 ES-GLSSHILASSVSLLRAVEVDDIMAGNDEKYRAVSVNTSDTPVPRESKSKKQPQYVPT 119

Query:   120 LPNSSHLDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEI 179
             +PNSSHLDAVPQATP+NRNRV+ KKVRTFP+CFDDTDP+   ENA+  E LVPIRLDME+
Sbjct:   120 MPNSSHLDAVPQATPINRNRVHTKKVRTFPMCFDDTDPTASLENAAQKECLVPIRLDMEL 179

Query:   180 EGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD 239
             EGQKLRDTFTWNKN         E++ITPEQFAEVLCDDLDLNPL FVPAIAQ+IRQQ +
Sbjct:   180 EGQKLRDTFTWNKN---------ESMITPEQFAEVLCDDLDLNPLPFVPAIAQAIRQQIE 230

Query:   240 AFPAEN-LLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGG 298
             AFP +  +L+E  DQRV++KLNIHVGNTSLVDQ+EWDMSEK N+ E+FA++LC ELGLGG
Sbjct:   231 AFPNDPPILEETCDQRVIVKLNIHVGNTSLVDQVEWDMSEKNNNPEEFAIKLCAELGLGG 290

Query:   299 EFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKI 358
             EFVTAIAYSIRGQLSWH RTYAFSEAPL  ++ PFR+ S++D W+PFLETLTDAEMEKKI
Sbjct:   291 EFVTAIAYSIRGQLSWHCRTYAFSEAPLSTIDVPFRNPSDADAWAPFLETLTDAEMEKKI 350

Query:   359 RDQDRNTRESK 369
             RDQDRNTR  +
Sbjct:   351 RDQDRNTRRMR 361

GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;NAS;IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;NAS

GO:0035060 "brahma complex" evidence=NAS;IDA;TAS

GO:0003713 "transcription coactivator activity" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0002165 "instar larval or pupal development" evidence=NAS

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=NAS

GO:0070984 "SET domain binding" evidence=IPI

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0008544 "epidermis development" evidence=IMP

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP

GO:0070983 "dendrite guidance" evidence=IMP

ZFIN|ZDB-GENE-041114-5 smarcb1a "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a" [Danio rerio (taxid:7955)]

 Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
 Identities = 255/369 (69%), Positives = 297/369 (80%)

Query:     4 RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
             +TYG KPI FQ+EE+GDFY IGSEVGNYLRMFRGSLYK+YP L RR  + EERK+++ ++
Sbjct:     5 KTYGQKPIKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLSRRLATVEERKKIVASS 64

Query:    64 GINSHC-LASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKKAVPWAPSLP 121
               + +  LA+SVTLLK SEVE+I +G+DEKYKAVSI TEP    RE K K+   W P+LP
Sbjct:    65 HDHGYTTLATSVTLLKASEVEEIFDGHDEKYKAVSISTEPPAYLREQKAKRNSQWVPTLP 124

Query:   122 NSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIE 180
             NSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVLVPIRLDMEI+
Sbjct:   125 NSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQQEVLVPIRLDMEID 184

Query:   181 GQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDA 240
             GQKLRD FTWN N         E L+TPE FAE+LCDDLDL+PL FVPAIA +IRQQ ++
Sbjct:   185 GQKLRDAFTWNMN---------EKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQQIES 235

Query:   241 FPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEF 300
             +P +++LDE  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC+ELGLGGEF
Sbjct:   236 YPTDSILDEQMDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEF 295

Query:   301 VTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIRD 360
             VT IAYSIRGQLSWHQRTYAFSE PLP VE   R+  ++DQW P LETLTDAEMEKKIRD
Sbjct:   296 VTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRD 355

Query:   361 QDRNTRESK 369
             QDRNTR  +
Sbjct:   356 QDRNTRRMR 364

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0044772 "mitotic cell cycle phase transition" evidence=IBA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IBA

GO:0043044 "ATP-dependent chromatin remodeling" evidence=IBA

GO:0005634 "nucleus" evidence=IEA;IBA

GO:0006337 "nucleosome disassembly" evidence=IBA

GO:0030154 "cell differentiation" evidence=IBA

GO:0008285 "negative regulation of cell proliferation" evidence=IBA

GO:0090544 "BAF-type complex" evidence=IBA

GO:0006281 "DNA repair" evidence=IBA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

RGD|1308761 Smarcb1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
 Identities = 250/369 (67%), Positives = 299/369 (81%)

Query:     4 RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
             +T+G KP+ FQ+E++G+FY IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++ ++
Sbjct:     8 KTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 67

Query:    64 GINSHC-LASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKKAVPWAPSLP 121
               + +  LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K+   W P+LP
Sbjct:    68 HDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNSQWVPTLP 127

Query:   122 NSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIE 180
             NSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVLVPIRLDMEI+
Sbjct:   128 NSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPIRLDMEID 187

Query:   181 GQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDA 240
             GQKLRD FTWN N         E L+TPE F+E+LCDDLDLNPL FVPAIA +IRQQ ++
Sbjct:   188 GQKLRDAFTWNMN---------EKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIES 238

Query:   241 FPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEF 300
             +P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC+ELGLGGEF
Sbjct:   239 YPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEF 298

Query:   301 VTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKKIRD 360
             VT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLTDAEMEKKIRD
Sbjct:   299 VTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRD 358

Query:   361 QDRNTRESK 369
             QDRNTR  +
Sbjct:   359 QDRNTRRMR 367

GO:0001741 "XY body" evidence=ISO

GO:0001824 "blastocyst development" evidence=ISO

GO:0001835 "blastocyst hatching" evidence=ISO

GO:0002039 "p53 binding" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0006337 "nucleosome disassembly" evidence=ISO

GO:0006338 "chromatin remodeling" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0016514 "SWI/SNF complex" evidence=ISO

GO:0030154 "cell differentiation" evidence=ISO

GO:0030957 "Tat protein binding" evidence=ISO

GO:0043923 "positive regulation by host of viral transcription" evidence=ISO

GO:0045090 "retroviral genome replication" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0071564 "npBAF complex" evidence=ISO

GO:0071565 "nBAF complex" evidence=ISO

UNIPROTKB|Q5ZK40 SMARCB1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1" [Gallus gallus (taxid:9031)]

 Score = 1288 (458.5 bits), Expect = 2.4e-131, P = 2.4e-131
 Identities = 254/379 (67%), Positives = 300/379 (79%)

Query:     4 RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
             +T+G KP+ FQ+EE+G+FY IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++ ++
Sbjct:     8 KTFGQKPVKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 67

Query:    64 GIN--SHC---------LASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTK 111
               N  SH          LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K
Sbjct:    68 HENQRSHSPRRYHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAK 127

Query:   112 KAVPWAPSLPNSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVL 170
             +   W P+LPNSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVL
Sbjct:   128 RNNQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVL 187

Query:   171 VPIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAI 230
             VPIRLDMEI+GQKLRD FTWN N         E L+TPE F+E+LCDDLDLNPL FVPAI
Sbjct:   188 VPIRLDMEIDGQKLRDAFTWNMN---------EKLMTPEMFSEILCDDLDLNPLTFVPAI 238

Query:   231 AQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRL 290
             A +IRQQ +++P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++L
Sbjct:   239 ASAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKL 298

Query:   291 CTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLT 350
             C+ELGLGGEFVT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLT
Sbjct:   299 CSELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLT 358

Query:   351 DAEMEKKIRDQDRNTRESK 369
             DAEMEKKIRDQDRNTR  +
Sbjct:   359 DAEMEKKIRDQDRNTRRMR 377

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0001741 "XY body" evidence=IEA

GO:0001835 "blastocyst hatching" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006337 "nucleosome disassembly" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030957 "Tat protein binding" evidence=IEA

GO:0043923 "positive regulation by host of viral transcription" evidence=IEA

GO:0045090 "retroviral genome replication" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0071565 "nBAF complex" evidence=IEA

ZFIN|ZDB-GENE-991008-16 smarcb1b "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1b" [Danio rerio (taxid:7955)]

 Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
 Identities = 256/372 (68%), Positives = 294/372 (79%)

Query:     4 RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
             +T+G KPI FQ+EE+GDFY IGSEVGNYLRMFRGSLYK+YP L+RR  S EERK+++   
Sbjct:    17 KTFGQKPIKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKIV--- 73

Query:    64 GINSHCLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKKAVPWAPSLPN 122
               +SH  A+SVTLLK SE E+I EGNDEKYKAVSI TEP    RE K K+   W P+LPN
Sbjct:    74 -ASSH--ATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKAKRNSQWVPTLPN 130

Query:   123 SSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLVPIRLDMEIEG 181
             SSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVLVPIRLDMEI+G
Sbjct:   131 SSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLDMEIDG 190

Query:   182 QKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTDAF 241
             QKLRD FTWN N         E L+TPE FAE+LCDDLDLNPL FVPAIA +IRQQ +++
Sbjct:   191 QKLRDAFTWNMN---------EKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESY 241

Query:   242 PAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFV 301
             P +++L+E  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS E FA++LC+ELGLGGEFV
Sbjct:   242 PTDSILEEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPESFALKLCSELGLGGEFV 301

Query:   302 TAIAYSIRGQLSWHQRTYAF----SEAPLPVVEAPFRSHSESDQWSPFLETLTDAEMEKK 357
             T IAYSIRGQLSWHQRTYAF    SE PLP VE   R+  ++DQW P LETLTDAEMEKK
Sbjct:   302 TTIAYSIRGQLSWHQRTYAFRSDFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKK 361

Query:   358 IRDQDRNTRESK 369
             IRDQDRNTR  +
Sbjct:   362 IRDQDRNTRRMR 373

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0090544 "BAF-type complex" evidence=IBA

GO:0006281 "DNA repair" evidence=IBA

GO:0006337 "nucleosome disassembly" evidence=IBA

GO:0043044 "ATP-dependent chromatin remodeling" evidence=IBA

GO:0030154 "cell differentiation" evidence=IBA

GO:0008285 "negative regulation of cell proliferation" evidence=IBA

GO:0044772 "mitotic cell cycle phase transition" evidence=IBA

UNIPROTKB|Q5BIN2 SMARCB1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1" [Bos taurus (taxid:9913)]

 Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
 Identities = 251/378 (66%), Positives = 298/378 (78%)

Query:     4 RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
             +T+G KP+ FQ+E++G+FY IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++ ++
Sbjct:     8 KTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 67

Query:    64 -------GINSH---CLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKK 112
                        H    LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K+
Sbjct:    68 HGKKTKPNAKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR 127

Query:   113 AVPWAPSLPNSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLV 171
                W P+LPNSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVLV
Sbjct:   128 NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLV 187

Query:   172 PIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIA 231
             PIRLDMEI+GQKLRD FTWN N         E L+TPE F+E+LCDDLDLNPL FVPAIA
Sbjct:   188 PIRLDMEIDGQKLRDAFTWNMN---------EKLMTPEMFSEILCDDLDLNPLTFVPAIA 238

Query:   232 QSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLC 291
              +IRQQ +++P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC
Sbjct:   239 SAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLC 298

Query:   292 TELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTD 351
             +ELGLGGEFVT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLTD
Sbjct:   299 SELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTD 358

Query:   352 AEMEKKIRDQDRNTRESK 369
             AEMEKKIRDQDRNTR  +
Sbjct:   359 AEMEKKIRDQDRNTRRMR 376

GO:0071565 "nBAF complex" evidence=ISS

GO:0071564 "npBAF complex" evidence=ISS

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045090 "retroviral genome replication" evidence=IEA

GO:0043923 "positive regulation by host of viral transcription" evidence=IEA

GO:0030957 "Tat protein binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0006337 "nucleosome disassembly" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0001835 "blastocyst hatching" evidence=IEA

GO:0001741 "XY body" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0000228 "nuclear chromosome" evidence=IEA

UNIPROTKB|E2RMD3 SMARCB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
 Identities = 251/378 (66%), Positives = 298/378 (78%)

Query:     4 RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
             +T+G KP+ FQ+E++G+FY IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++ ++
Sbjct:     8 KTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 67

Query:    64 -------GINSH---CLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKK 112
                        H    LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K+
Sbjct:    68 HGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR 127

Query:   113 AVPWAPSLPNSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLV 171
                W P+LPNSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVLV
Sbjct:   128 NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLV 187

Query:   172 PIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIA 231
             PIRLDMEI+GQKLRD FTWN N         E L+TPE F+E+LCDDLDLNPL FVPAIA
Sbjct:   188 PIRLDMEIDGQKLRDAFTWNMN---------EKLMTPEMFSEILCDDLDLNPLTFVPAIA 238

Query:   232 QSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLC 291
              +IRQQ +++P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC
Sbjct:   239 SAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLC 298

Query:   292 TELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTD 351
             +ELGLGGEFVT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLTD
Sbjct:   299 SELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTD 358

Query:   352 AEMEKKIRDQDRNTRESK 369
             AEMEKKIRDQDRNTR  +
Sbjct:   359 AEMEKKIRDQDRNTRRMR 376

GO:0006337 "nucleosome disassembly" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0001835 "blastocyst hatching" evidence=IEA

GO:0001741 "XY body" evidence=IEA

GO:0071565 "nBAF complex" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045090 "retroviral genome replication" evidence=IEA

GO:0043923 "positive regulation by host of viral transcription" evidence=IEA

GO:0030957 "Tat protein binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0000228 "nuclear chromosome" evidence=IEA

UNIPROTKB|Q12824 SMARCB1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1" [Homo sapiens (taxid:9606)]

 Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
 Identities = 251/378 (66%), Positives = 298/378 (78%)

Query:     4 RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
             +T+G KP+ FQ+E++G+FY IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++ ++
Sbjct:     8 KTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 67

Query:    64 -------GINSH---CLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKK 112
                        H    LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K+
Sbjct:    68 HGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR 127

Query:   113 AVPWAPSLPNSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLV 171
                W P+LPNSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVLV
Sbjct:   128 NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLV 187

Query:   172 PIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIA 231
             PIRLDMEI+GQKLRD FTWN N         E L+TPE F+E+LCDDLDLNPL FVPAIA
Sbjct:   188 PIRLDMEIDGQKLRDAFTWNMN---------EKLMTPEMFSEILCDDLDLNPLTFVPAIA 238

Query:   232 QSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLC 291
              +IRQQ +++P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC
Sbjct:   239 SAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLC 298

Query:   292 TELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTD 351
             +ELGLGGEFVT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLTD
Sbjct:   299 SELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTD 358

Query:   352 AEMEKKIRDQDRNTRESK 369
             AEMEKKIRDQDRNTR  +
Sbjct:   359 AEMEKKIRDQDRNTRRMR 376

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0001741 "XY body" evidence=IEA

GO:0001835 "blastocyst hatching" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IDA

GO:0071564 "npBAF complex" evidence=ISS

GO:0071565 "nBAF complex" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0045090 "retroviral genome replication" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0015074 "DNA integration" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0002039 "p53 binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0003713 "transcription coactivator activity" evidence=IMP;NAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0006337 "nucleosome disassembly" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0043923 "positive regulation by host of viral transcription" evidence=IMP

GO:0030957 "Tat protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F2Z4X9 SMARCB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
 Identities = 251/378 (66%), Positives = 298/378 (78%)

Query:     4 RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
             +T+G KP+ FQ+E++G+FY IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++ ++
Sbjct:     8 KTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 67

Query:    64 -------GINSH---CLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKK 112
                        H    LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K+
Sbjct:    68 HGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR 127

Query:   113 AVPWAPSLPNSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLV 171
                W P+LPNSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVLV
Sbjct:   128 NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLV 187

Query:   172 PIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIA 231
             PIRLDMEI+GQKLRD FTWN N         E L+TPE F+E+LCDDLDLNPL FVPAIA
Sbjct:   188 PIRLDMEIDGQKLRDAFTWNMN---------EKLMTPEMFSEILCDDLDLNPLTFVPAIA 238

Query:   232 QSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLC 291
              +IRQQ +++P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC
Sbjct:   239 SAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLC 298

Query:   292 TELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTD 351
             +ELGLGGEFVT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLTD
Sbjct:   299 SELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTD 358

Query:   352 AEMEKKIRDQDRNTRESK 369
             AEMEKKIRDQDRNTR  +
Sbjct:   359 AEMEKKIRDQDRNTRRMR 376

GO:0071565 "nBAF complex" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045090 "retroviral genome replication" evidence=IEA

GO:0043923 "positive regulation by host of viral transcription" evidence=IEA

GO:0030957 "Tat protein binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0006337 "nucleosome disassembly" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0001835 "blastocyst hatching" evidence=IEA

GO:0001741 "XY body" evidence=IEA

GO:0000228 "nuclear chromosome" evidence=IEA

MGI|MGI:1328366 Smarcb1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1" [Mus musculus (taxid:10090)]

 Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
 Identities = 251/378 (66%), Positives = 298/378 (78%)

Query:     4 RTYGDKPISFQIEENGDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKRLLDTA 63
             +T+G KP+ FQ+E++G+FY IGSEVGNYLRMFRGSLYK+YP L+RR  + EERK+++ ++
Sbjct:     8 KTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEERKKIVASS 67

Query:    64 -------GINSH---CLASSVTLLKVSEVEDILEGNDEKYKAVSIHTEP-LVPRESKTKK 112
                        H    LA+SVTLLK SEVE+IL+GNDEKYKAVSI TEP    RE K K+
Sbjct:    68 HGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKR 127

Query:   113 AVPWAPSLPNSSH-LDAVPQATPVNRNRVNQKKVRTFPLCFDDTDPSCIFENASHTEVLV 171
                W P+LPNSSH LDAVP +T +NRNR+ + K RTFPLCFDD DP+ I ENAS  EVLV
Sbjct:   128 NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLV 187

Query:   172 PIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDLNPLLFVPAIA 231
             PIRLDMEI+GQKLRD FTWN N         E L+TPE F+E+LCDDLDLNPL FVPAIA
Sbjct:   188 PIRLDMEIDGQKLRDAFTWNMN---------EKLMTPEMFSEILCDDLDLNPLTFVPAIA 238

Query:   232 QSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLC 291
              +IRQQ +++P +++L++  DQRV+IKLNIHVGN SLVDQ EWDMSEKENS EKFA++LC
Sbjct:   239 SAIRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLC 298

Query:   292 TELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTD 351
             +ELGLGGEFVT IAYSIRGQLSWHQ+TYAFSE PLP VE   R+  ++DQW P LETLTD
Sbjct:   299 SELGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTD 358

Query:   352 AEMEKKIRDQDRNTRESK 369
             AEMEKKIRDQDRNTR  +
Sbjct:   359 AEMEKKIRDQDRNTRRMR 376

GO:0000228 "nuclear chromosome" evidence=IEA

GO:0001741 "XY body" evidence=IDA

GO:0001824 "blastocyst development" evidence=IMP

GO:0001835 "blastocyst hatching" evidence=IMP

GO:0002039 "p53 binding" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006281 "DNA repair" evidence=IBA

GO:0006337 "nucleosome disassembly" evidence=ISO;IBA

GO:0006338 "chromatin remodeling" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IBA

GO:0007049 "cell cycle" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0016514 "SWI/SNF complex" evidence=ISO;IDA

GO:0016568 "chromatin modification" evidence=IEA

GO:0030154 "cell differentiation" evidence=IMP

GO:0030957 "Tat protein binding" evidence=ISO

GO:0043044 "ATP-dependent chromatin remodeling" evidence=IBA

GO:0043923 "positive regulation by host of viral transcription" evidence=ISO

GO:0044772 "mitotic cell cycle phase transition" evidence=IBA

GO:0045090 "retroviral genome replication" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0071564 "npBAF complex" evidence=IDA

GO:0071565 "nBAF complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z0H3	SNF5_MOUSE	No assigned EC number	0.6693	0.5627	0.9194	yes	N/A
Q12824	SNF5_HUMAN	No assigned EC number	0.6693	0.5627	0.9194	yes	N/A
Q5U379	SNF5_DANRE	No assigned EC number	0.6910	0.5675	0.9571	yes	N/A
Q5ZK40	SNF5_CHICK	No assigned EC number	0.6701	0.5675	0.9248	yes	N/A
Q5BIN2	SNF5_BOVIN	No assigned EC number	0.6693	0.5627	0.9194	yes	N/A
Q6DFM1	SNF5_XENTR	No assigned EC number	0.6774	0.5675	0.9444	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	629
pfam04855	228	pfam04855, SNF5, SNF5 / SMARCB1 / INI1	9e-85
pfam04855	228	pfam04855, SNF5, SNF5 / SMARCB1 / INI1	9e-82

>gnl|CDD|218293 pfam04855, SNF5, SNF5 / SMARCB1 / INI1

 Score =  264 bits (677), Expect = 9e-85
 Identities = 101/228 (44%), Positives = 142/228 (62%), Gaps = 32/228 (14%)

Query: 422 ENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAI 481
             A   E+LVPIRLD+E++G KLRDTFTWN NE+LITPE+FAE+LC+DLDL    F+  I
Sbjct: 1   AQAEQPEILVPIRLDLELDGYKLRDTFTWNLNESLITPEEFAEILCEDLDLPNSPFIQQI 60

Query: 482 AQSIRQQTDAFPAENLLDEVH---------------DQRVVIKLNIHVGNTSLVDQIEWD 526
           + SIR+Q + +    LL ++                D RV+IKLNI++G  +L+DQ EWD
Sbjct: 61  SSSIREQIEEYAGVALLPQLEPEDPDLPSSAYKNDDDLRVLIKLNINLGQQNLIDQFEWD 120

Query: 527 MSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQR-----TYAFSEAPLPVVE 581
           +++  N+ E+FA  +C +LGL GEFVTAIA+SIR QL   ++      + F  +P+   E
Sbjct: 121 LNDPPNTPEEFAEIMCADLGLSGEFVTAIAHSIREQLLKFKKSLCELGHLFDGSPIEDDE 180

Query: 582 -----APFRSHS-------ESDQWSPFLETLTDAEMEKKIRDQDRNTR 617
                 P             +D+W+P LE LTDAE+E++ RD++RNTR
Sbjct: 181 IRAAFLPGPLAGTRRDPDQLADEWTPRLEELTDAEIERRERDRERNTR 228

SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterized so far. This family consists of the conserved region of SNF5, including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex. SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily b, member 1, and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs). Length = 228

>gnl|CDD|218293 pfam04855, SNF5, SNF5 / SMARCB1 / INI1

 Score =  256 bits (657), Expect = 9e-82
 Identities = 101/237 (42%), Positives = 142/237 (59%), Gaps = 41/237 (17%)

Query: 162 ENASHTEVLVPIRLDMEIEGQKLRDTFTWNKNGTVFSFCSLETLITPEQFAEVLCDDLDL 221
             A   E+LVPIRLD+E++G KLRDTFTWN N         E+LITPE+FAE+LC+DLDL
Sbjct: 1   AQAEQPEILVPIRLDLELDGYKLRDTFTWNLN---------ESLITPEEFAEILCEDLDL 51

Query: 222 NPLLFVPAIAQSIRQQTDAFPAENLLDEVH---------------DQRVVIKLNIHVGNT 266
               F+  I+ SIR+Q + +    LL ++                D RV+IKLNI++G  
Sbjct: 52  PNSPFIQQISSSIREQIEEYAGVALLPQLEPEDPDLPSSAYKNDDDLRVLIKLNINLGQQ 111

Query: 267 SLVDQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQR-----TYAF 321
           +L+DQ EWD+++  N+ E+FA  +C +LGL GEFVTAIA+SIR QL   ++      + F
Sbjct: 112 NLIDQFEWDLNDPPNTPEEFAEIMCADLGLSGEFVTAIAHSIREQLLKFKKSLCELGHLF 171

Query: 322 SEAPLPVVE-----APFRSHS-------ESDQWSPFLETLTDAEMEKKIRDQDRNTR 366
             +P+   E      P             +D+W+P LE LTDAE+E++ RD++RNTR
Sbjct: 172 DGSPIEDDEIRAAFLPGPLAGTRRDPDQLADEWTPRLEELTDAEIERRERDRERNTR 228

SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterized so far. This family consists of the conserved region of SNF5, including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex. SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily b, member 1, and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs). Length = 228

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	629
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 5e-10
 Identities = 97/679 (14%), Positives = 173/679 (25%), Gaps = 220/679 (32%)

Query: 1   MSVRTYGDKPISFQIEEN--GDFYCIGSEVGNYLRMFRGSLYKKYPGLFRRTISNEERKR 58
                Y  K I    E+    +F C                 K    + +  +S EE   
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDC-----------------KDVQDMPKSILSKEEIDH 53

Query: 59  LLDTAGINSHCLASSVTLLKVSE------VEDILEGNDEKYK--AVSIHTEPLVPRESKT 110
           ++ +    S  L    TLL   E      VE++L  N   YK     I TE   P    T
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQP-SMMT 109

Query: 111 KKAVPWAPSLPNSSHLDAVPQATPVNRNRVNQ-KKVRTFPLCFDDTDPSCIFENASHTEV 169
           +  +     L N             N +R+    K+R             + E      V
Sbjct: 110 RMYIEQRDRLYND-----NQVFAKYNVSRLQPYLKLRQ-----------ALLELRPAKNV 153

Query: 170 LVPIRLDMEIEGQK-----------LRD-TFTWNKNGTVF--SF---CSLETLITPEQFA 212
           L+        +G                       +  +F  +     S ET++   Q  
Sbjct: 154 LI--------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-- 203

Query: 213 EVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLV-DQ 271
             L   +D N        + +I+ +  +   +  L      R ++K   +  N  LV   
Sbjct: 204 -KLLYQIDPN-WTSRSDHSSNIKLRIHS--IQAEL------RRLLKSKPYE-NCLLVLLN 252

Query: 272 IEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEA 331
           +  +      +   F +  C  L      +T     +   LS    T+   +        
Sbjct: 253 V-QN----AKAWNAFNLS-CKIL------LTTRFKQVTDFLSAATTTHISLD-------- 292

Query: 332 PFRSHSESDQWSPFLETLTDAEMEK---KIRDQDRNTRESKTKKAVPWAPSL------PN 382
                           TLT  E++    K  D        +     P   S+        
Sbjct: 293 ------------HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 383 SSHLDAVPQATPVNRNRVNQKKV-RTFPLCFDDTDPS---------CIFENASHTEVLVP 432
            +  D        N   VN  K+        +  +P+          +F         +P
Sbjct: 341 LATWD--------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP----SAHIP 388

Query: 433 IRLDMEIEGQKLRDTFTWNKNETLITPEQFAEVLCDDLDLN-----PLLFVPAIAQSIRQ 487
             L + +          W               L     +        + +P+I   ++ 
Sbjct: 389 TIL-LSL---------IWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 488 QTDAFPAENLLDEVHDQRVVIKLNIHVGNTSLVDQIEWDMSEKENSAEKFAVRLCTELGL 547
           + +          +H + +V   NI        D    D+                    
Sbjct: 438 KLEN------EYALH-RSIVDHYNIPKT----FDS--DDLIPPYLD-------------- 470

Query: 548 GGEFVTAIAYSIRGQLSWHQRTYAFSEAPLPVVEAPFRSHSESDQWSPFLETLTDAE-ME 606
              F + I +        H                  ++    ++ + F     D   +E
Sbjct: 471 -QYFYSHIGH--------H-----------------LKNIEHPERMTLFRMVFLDFRFLE 504

Query: 607 KKIRDQDRNTRRMRRLANT 625
           +KIR           + NT
Sbjct: 505 QKIRHDSTAWNASGSILNT 523

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 3e-09
 Identities = 84/577 (14%), Positives = 158/577 (27%), Gaps = 183/577 (31%)

Query: 76  LLKVSEVEDILEGNDEKYKAVSIHTEPLVPRESKTKKAV--------PW----------A 117
           +L   E++ I+   D     + +    L  +E   +K V         +           
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 118 PSLPNSSHLDA-------VPQATPVNRNRVNQ-KKVRTFPLCFDDTDPSCIFENASHTEV 169
           PS+    +++               N +R+    K+R             + E      V
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-----------ALLELRPAKNV 153

Query: 170 LVPIRLDMEIEGQK-----------LRD-TFTWNKNGTVF--SF---CSLETLITPEQFA 212
           L+        +G                       +  +F  +     S ET++   Q  
Sbjct: 154 LI--------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ-- 203

Query: 213 EVLCDDLDLNPLLFVPAIAQSIRQQTDAFPAE--NL------------LDEVHDQRVVIK 258
             L   +D N        + +I+ +  +  AE   L            L  V + +    
Sbjct: 204 -KLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 259 LNIHV------GNTSLVDQIEWDMSEKENSAEKFAVRLCTE--LGLGGEFVTAIAYSIRG 310
            N+            + D +    +    S +  ++ L  +    L  +++      +  
Sbjct: 262 FNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 311 QLSWHQRTYAFSEAPLPV--VEAPFRSH-SESDQW------------SPFLETLTDAEME 355
           +          +  P  +  +    R   +  D W               L  L  AE  
Sbjct: 321 E--------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 356 K------------KI--------------RDQDRNTRESKTKKAV-----PWAPSLPNSS 384
           K             I               D      +      V         S+P S 
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SI 431

Query: 385 HLDAVPQATPVNRNRVNQKKVR--TFPLCFDDTDPSC------IF-------ENASHTEV 429
           +L+   +    N   +++  V     P  FD  D          +       +N  H E 
Sbjct: 432 YLELKVKLE--NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 430 LVPIR---LDMEIEGQKLR-DTFTWNK----NETLITPEQFAEVLCDDLD-----LNPLL 476
           +   R   LD     QK+R D+  WN       TL   + +   +CD+       +N +L
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 477 -FVPAIAQ--------SIRQQTDAFPAENLLDEVHDQ 504
            F+P I +         + +       E + +E H Q
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	629
2lru_A	98	Serine/threonine-protein kinase WNK1; autoinhibito	82.37
2k89_A	80	PLA2P, PLAP, phospholipase A-2-activating protein;	81.09

>2lru_A Serine/threonine-protein kinase WNK1; autoinhibitory domain, PF2 domain, transferase; NMR {Rattus norvegicus}

Probab=82.37  E-value=0.29  Score=43.08  Aligned_cols=46  Identities=15%  Similarity=0.177  Sum_probs=41.1

Q ss_pred             cceeecCCCCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhhc
Q psy13560        521 DQIEWDMSEKENSAEKFAVRLCTELGLGGEFVTAIAYSIRGQLSWHQR  568 (629)
Q Consensus       521 DqFEWDl~~~~nsPE~FA~~~c~DLGL~gEF~~AIAhsIrEQl~~~~k  568 (629)
                      =||..||..  .+||++|..||..+.|+.+=..+||-.|+.++...++
T Consensus        48 IeF~Fdle~--Dta~eVA~EMVe~~~l~e~D~~~VaklI~~~v~~~~r   93 (98)
T 2lru_A           48 IEFSFDLER--DVPEDVAQEMVESGYVCEGDHKTMAKAIKDRVSLIKR   93 (98)
Confidence            378899986  4899999999999999999999999999999876654

>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B

Probab=81.09  E-value=3  Score=35.48  Aligned_cols=39  Identities=23%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             EeeeCCCCCCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Q psy13560        448 FTWNKNETLITPEQFAEVLCDDLDLNPLLFVPAIAQSIRQQTD  490 (629)
Q Consensus       448 F~WNlnE~~itPe~FA~~lc~Dl~l~p~~~~~~I~~sI~~Qi~  490 (629)
                      +-.|.+|   .|-.-|+.+|++-+| |..|..+|++-|.+...
T Consensus        33 LpyN~~d---nP~~aAqkFi~~n~L-p~~yldqI~~FI~~N~~   71 (80)
T 2k89_A           33 LPYNTSD---DPWLTAYNFLQKNDL-NPMFLDQVAKFIIDNTK   71 (80)
T ss_dssp             EEECTTS---CHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHS
T ss_pred             cCccCCC---CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC
Confidence            5689999   799999999999999 67899999999998875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005