Psyllid ID: psy13574


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
MFVTTTIAVIYFTVFFQGITIKPLVKILNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHHVRDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFMRRNASTIGGGSITGTDSMSAIFRNYTTGHLNGR
ccEEEEEEEEEEEHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccc
ccEEEEEEEEHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHccccccccccccccHHHHHHHccccccccccc
MFVTTTIAVIYFTVFFQGITIKPLVKILNvktaerrkpsmNERIHERLMDHVMAGIEDIlgrhgnhhvRDRFkrfdnrfirpyllrdhqqgaepkILETYSKLAMKDAMEFMRRNastigggsitgtdsMSAIFRNYTTGHLNGR
MFVTTTIAVIYFtvffqgitikplvkilnvktaerrkpsmnerIHERLMDHVMAGIEDILGRHGNHHVRDRFKRFDNRFIRPyllrdhqqgaepkILETYSKLAMKDAMEFMRRNAstigggsitgtdsmsAIFRNYTTGHLNGR
MFVTTTIAVIYFTVFFQGITIKPLVKILNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHHVRDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFMRRNAstigggsitgtDSMSAIFRNYTTGHLNGR
*FVTTTIAVIYFTVFFQGITIKPLVKILNVKT***********IHERLMDHVMAGIEDILGRHGNHHVRDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMK*AM*F********************AIFRNY********
MFVTTTIAVIYFTVFFQGITIKPLVKILNV***************ERLMDHVMAGIEDILGRHGNHHVRDRFKRFDNRFIRPYLL**H******KILETYSKLAMKDA*************************************
MFVTTTIAVIYFTVFFQGITIKPLVKILNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHHVRDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFMRRNASTIGGGSITGTDSMSAIFRNYTTGHLNGR
MFVTTTIAVIYFTVFFQGITIKPLVKILNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHHVRDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFMRRN******************************
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MFVTTTIAVIYFTVFFQGITIKPLVKILNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHHVRDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFMRRNASTIGGGSITGTDSMSAIFRNYTTGHLNGR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query145 2.2.26 [Sep-21-2011]
P26432 832 Sodium/hydrogen exchanger yes N/A 0.772 0.134 0.455 2e-27
P26434 717 Sodium/hydrogen exchanger yes N/A 0.737 0.149 0.518 3e-27
P26433 831 Sodium/hydrogen exchanger no N/A 0.772 0.134 0.437 1e-26
P48764 834 Sodium/hydrogen exchanger yes N/A 0.772 0.134 0.446 1e-26
Q6AI14 798 Sodium/hydrogen exchanger no N/A 0.751 0.136 0.508 2e-26
Q8BUE1 797 Sodium/hydrogen exchanger no N/A 0.751 0.136 0.5 3e-26
Q28362 839 Sodium/hydrogen exchanger N/A N/A 0.772 0.133 0.437 9e-26
Q28036 817 Sodium/hydrogen exchanger no N/A 0.765 0.135 0.428 5e-25
P23791 816 Sodium/hydrogen exchanger no N/A 0.765 0.136 0.428 6e-25
P26431 820 Sodium/hydrogen exchanger no N/A 0.765 0.135 0.428 6e-25
>sp|P26432|SL9A3_RABIT Sodium/hydrogen exchanger 3 OS=Oryctolagus cuniculus GN=SLC9A3 PE=1 SV=1 Back     alignment and function desciption
 Score =  121 bits (303), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/112 (45%), Positives = 82/112 (73%)

Query: 1   MFVTTTIAVIYFTVFFQGITIKPLVKILNVKTAERRKPSMNERIHERLMDHVMAGIEDIL 60
           +FV+TTI V++FTV FQG+TIKPLV+ L VK +E R+P +NE++H R  DH+++ IEDI 
Sbjct: 435 LFVSTTIIVVFFTVIFQGLTIKPLVQWLKVKRSEHREPKLNEKLHGRAFDHILSAIEDIS 494

Query: 61  GRHGNHHVRDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFM 112
           G+ G++++RD++  FD RF+   L+R   Q +  +IL  + +L +KDA+ ++
Sbjct: 495 GQIGHNYLRDKWANFDRRFLSKLLMRQSAQKSRDRILNVFHELNLKDAISYV 546




Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.
Oryctolagus cuniculus (taxid: 9986)
>sp|P26434|SL9A4_RAT Sodium/hydrogen exchanger 4 OS=Rattus norvegicus GN=Slc9a4 PE=1 SV=1 Back     alignment and function description
>sp|P26433|SL9A3_RAT Sodium/hydrogen exchanger 3 OS=Rattus norvegicus GN=Slc9a3 PE=1 SV=1 Back     alignment and function description
>sp|P48764|SL9A3_HUMAN Sodium/hydrogen exchanger 3 OS=Homo sapiens GN=SLC9A3 PE=1 SV=2 Back     alignment and function description
>sp|Q6AI14|SL9A4_HUMAN Sodium/hydrogen exchanger 4 OS=Homo sapiens GN=SLC9A4 PE=1 SV=2 Back     alignment and function description
>sp|Q8BUE1|SL9A4_MOUSE Sodium/hydrogen exchanger 4 OS=Mus musculus GN=Slc9a4 PE=2 SV=1 Back     alignment and function description
>sp|Q28362|SL9A3_DIDVI Sodium/hydrogen exchanger 3 OS=Didelphis virginiana GN=SLC9A3 PE=1 SV=1 Back     alignment and function description
>sp|Q28036|SL9A1_BOVIN Sodium/hydrogen exchanger 1 OS=Bos taurus GN=SLC9A1 PE=2 SV=1 Back     alignment and function description
>sp|P23791|SL9A1_RABIT Sodium/hydrogen exchanger 1 OS=Oryctolagus cuniculus GN=SLC9A1 PE=2 SV=1 Back     alignment and function description
>sp|P26431|SL9A1_RAT Sodium/hydrogen exchanger 1 OS=Rattus norvegicus GN=Slc9a1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
270004444 857 hypothetical protein TcasGA2_TC003796 [T 0.972 0.164 0.833 1e-66
189235673 988 PREDICTED: similar to alkali metal ion/p 0.972 0.142 0.833 2e-66
350417574 1037 PREDICTED: sodium/hydrogen exchanger 3-l 0.972 0.135 0.806 3e-63
350417576 1044 PREDICTED: sodium/hydrogen exchanger 3-l 0.972 0.135 0.806 3e-63
322802306 1023 hypothetical protein SINV_10800 [Solenop 0.972 0.137 0.813 5e-63
332031580 1047 Sodium/hydrogen exchanger 3 [Acromyrmex 0.972 0.134 0.813 5e-63
307213111 1090 Sodium/hydrogen exchanger 3 [Harpegnatho 0.972 0.129 0.808 7e-63
383848213 1039 PREDICTED: sodium/hydrogen exchanger 3-l 0.972 0.135 0.813 9e-63
328779129 1042 PREDICTED: sodium/hydrogen exchanger 3 [ 0.972 0.135 0.806 3e-62
307171705 1037 Sodium/hydrogen exchanger 3 [Camponotus 0.972 0.135 0.806 4e-62
>gi|270004444|gb|EFA00892.1| hypothetical protein TcasGA2_TC003796 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 120/144 (83%), Positives = 139/144 (96%), Gaps = 3/144 (2%)

Query: 1   MFVTTTIAVIYFTVFFQGITIKPLVKILNVKTAERRKPSMNERIHERLMDHVMAGIEDIL 60
           MF+TTTIAV+YFTVFFQGITIKPLVKILNVKT+E+RKP+MNERIHERLMDHVMA +EDI+
Sbjct: 369 MFMTTTIAVVYFTVFFQGITIKPLVKILNVKTSEKRKPTMNERIHERLMDHVMAALEDIM 428

Query: 61  GRHGNHHVRDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFMRRNASTIG 120
           G+HGN+H+RDRFKRFDN+FIRPYLLR+H QGAEPKILETYSKLAM+DAME+MRRNASTI 
Sbjct: 429 GQHGNYHIRDRFKRFDNKFIRPYLLRNH-QGAEPKILETYSKLAMRDAMEYMRRNASTI- 486

Query: 121 GGSITGTDSMSAIFRNYTTGHLNG 144
            G+I+GT+SMSAIF+NYT G+LNG
Sbjct: 487 -GNISGTESMSAIFKNYTAGNLNG 509




Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235673|ref|XP_001810932.1| PREDICTED: similar to alkali metal ion/proton exchanger 3 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|350417574|ref|XP_003491489.1| PREDICTED: sodium/hydrogen exchanger 3-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350417576|ref|XP_003491490.1| PREDICTED: sodium/hydrogen exchanger 3-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|322802306|gb|EFZ22702.1| hypothetical protein SINV_10800 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332031580|gb|EGI71052.1| Sodium/hydrogen exchanger 3 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307213111|gb|EFN88633.1| Sodium/hydrogen exchanger 3 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383848213|ref|XP_003699746.1| PREDICTED: sodium/hydrogen exchanger 3-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328779129|ref|XP_391857.3| PREDICTED: sodium/hydrogen exchanger 3 [Apis mellifera] Back     alignment and taxonomy information
>gi|307171705|gb|EFN63440.1| Sodium/hydrogen exchanger 3 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
FB|FBgn0040297 1322 Nhe2 "Na[+]/H[+] hydrogen exch 0.972 0.106 0.715 3.1e-49
UNIPROTKB|E1BZW2 695 SLC9A4 "Sodium/hydrogen exchan 0.772 0.161 0.508 2.8e-25
UNIPROTKB|F1P4S6 699 SLC9A4 "Sodium/hydrogen exchan 0.772 0.160 0.508 2.8e-25
UNIPROTKB|E1BZW1 702 SLC9A4 "Sodium/hydrogen exchan 0.772 0.159 0.508 2.9e-25
UNIPROTKB|F1NWS2395 LOC100857416 "Sodium/hydrogen 0.765 0.281 0.441 1.2e-24
RGD|3721 717 Slc9a4 "solute carrier family 0.737 0.149 0.518 1.3e-24
UNIPROTKB|P26434 717 Slc9a4 "Sodium/hydrogen exchan 0.737 0.149 0.518 1.3e-24
UNIPROTKB|P26432 832 SLC9A3 "Sodium/hydrogen exchan 0.772 0.134 0.455 1.4e-24
UNIPROTKB|Q6AI14 798 SLC9A4 "Sodium/hydrogen exchan 0.751 0.136 0.508 2.7e-24
ZFIN|ZDB-GENE-070912-541 795 slc9a2 "solute carrier family 0.758 0.138 0.464 3.5e-24
FB|FBgn0040297 Nhe2 "Na[+]/H[+] hydrogen exchanger 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 525 (189.9 bits), Expect = 3.1e-49, P = 3.1e-49
 Identities = 103/144 (71%), Positives = 119/144 (82%)

Query:     1 MFVTTTIAVIYFTVFFQGITIKPLVKILNVKTAERRKPSMNERIHERLMDHVMAGIEDIL 60
             MFVTTTIAVIYFTVF QGITIKPLVKILNVK A +RKP+MNERIHER MDH+MAGIEDI+
Sbjct:   577 MFVTTTIAVIYFTVFLQGITIKPLVKILNVKRANKRKPTMNERIHERFMDHLMAGIEDIV 636

Query:    61 GRHGNHHVRDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFMRRNAXXXX 120
             G+ GN++VRD+FKRFDNRFIRP L+RD  +GAEPKI+ETYSKL M+DAME MRRN     
Sbjct:   637 GKTGNYNVRDKFKRFDNRFIRPLLIRD-LKGAEPKIIETYSKLTMRDAMEVMRRNPSTIG 695

Query:   121 XXXXXXXDSMSAIFRNYTTGHLNG 144
                    +SMSA+FRNYT  ++ G
Sbjct:   696 QMTGT--ESMSALFRNYTNNYIGG 717




GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;NAS
GO:0006885 "regulation of pH" evidence=IEA;NAS
GO:0006814 "sodium ion transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0006873 "cellular ion homeostasis" evidence=IEP
UNIPROTKB|E1BZW2 SLC9A4 "Sodium/hydrogen exchanger" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4S6 SLC9A4 "Sodium/hydrogen exchanger" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZW1 SLC9A4 "Sodium/hydrogen exchanger" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWS2 LOC100857416 "Sodium/hydrogen exchanger" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|3721 Slc9a4 "solute carrier family 9, subfamily A (NHE4, cation proton antiporter 4), member 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P26434 Slc9a4 "Sodium/hydrogen exchanger 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P26432 SLC9A3 "Sodium/hydrogen exchanger 3" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|Q6AI14 SLC9A4 "Sodium/hydrogen exchanger 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070912-541 slc9a2 "solute carrier family 9 (sodium/hydrogen exchanger), member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P26434SL9A4_RATNo assigned EC number0.51810.73790.1492yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
TIGR00840559 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 7e-37
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 Back     alignment and domain information
 Score =  131 bits (332), Expect = 7e-37
 Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 1   MFVTTTIAVIYFTVFFQGITIKPLVKILNVKTAERRKPSMNERIHERLMDHVMAGIEDIL 60
           +FVTTT+ V++FTV FQG TIKPLV++L VK     K  +NE +H+R  DH++ GIEDI 
Sbjct: 388 LFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKGCISKTKINEELHDREFDHLLPGIEDIC 447

Query: 61  GRHGNHHVRDRFKRFDNRFIRPYLLRDHQQGAEPKILETYSKLAMKDAMEFMRRNASTIG 120
           G+ G+    D+   FD +++   L+R         I+  Y KL +K A+  +   + +  
Sbjct: 448 GQIGHDRAIDKLNGFDIKYLLKPLIR-RNSPKSSDIVAVYHKLNLKQAISLVEGGSLSFV 506

Query: 121 G 121
           G
Sbjct: 507 G 507


The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles.This model is specific for the eukaryotic members members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 559


Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
2bec_B43 Crystal Structure Of Chp2 In Complex With Its Bindi 2e-06
>pdb|2BEC|B Chain B, Crystal Structure Of Chp2 In Complex With Its Binding Region In Nhe1 And Insights Into The Mechanism Of Ph Regulation Length = 43 Back     alignment and structure

Iteration: 1

Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats. Identities = 21/43 (48%), Positives = 30/43 (69%) Query: 25 VKILNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHH 67 V +L VK + K S+NE IH + +DH++ GIEDI G +G+HH Sbjct: 1 VDLLAVKKKQETKRSINEEIHTQFLDHLLTGIEDICGHYGHHH 43

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
2bec_B43 Sodium/hydrogen exchanger 1; calcineurin-homologou 2e-18
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B Length = 43 Back     alignment and structure
 Score = 72.4 bits (178), Expect = 2e-18
 Identities = 21/43 (48%), Positives = 30/43 (69%)

Query: 25 VKILNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHH 67
          V +L VK  +  K S+NE IH + +DH++ GIEDI G +G+HH
Sbjct: 1  VDLLAVKKKQETKRSINEEIHTQFLDHLLTGIEDICGHYGHHH 43


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
2bec_B43 Sodium/hydrogen exchanger 1; calcineurin-homologou 99.5
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B Back     alignment and structure
Probab=99.50  E-value=3.4e-15  Score=92.09  Aligned_cols=43  Identities=49%  Similarity=0.865  Sum_probs=24.9

Q ss_pred             HHHhhhhcccccCCCchHHHHHHHHHHhhhhccccccccccch
Q psy13574         25 VKILNVKTAERRKPSMNERIHERLMDHVMAGIEDILGRHGNHH   67 (145)
Q Consensus        25 v~~L~Ik~~~~~~~~l~e~~~~~~~dh~~~giEdi~g~~g~~~   67 (145)
                      |+||+||++++.+++++|++|++++||+|+|+|||||++||+|
T Consensus         1 V~~L~Vkr~~~~~~t~~e~ih~~~~dhlmaGiEdi~G~~g~~~   43 (43)
T 2bec_B            1 VDLLAVKKKQETKRSINEEIHTQFLDHLLTGIEDICGHYGHHH   43 (43)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             CcceeeeccccccccHHHHHhhhhhhhhhhchHhhcCCCCCCC
Confidence            6899999999999999999999999999999999999999986




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00