Psyllid ID: psy13615

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MVVKTRMVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP
Secondary Structure (PSIPRED)
cEEEEEccccccccEEEccccHHHHHHHHHHHccccEEcccEEEEcccHHHHcccccccccccccEEcEEccccccccccEEEEEEEcccccccccEEEcccccccccccccccccEEEEEEEEEEcccccccccccccccEEEEEcccccccccccEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccEEEEcccHHHHHHHHHHHHcccccccEEEEEEEcccccHHHHHHHHccccEEEccHHHcccccHHHHHHHHHHHHHHHHcccEEEEEEEEEcccccccccEEEEEEEEEEEEcccccccccccccccEEEEEEccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccEEEEEEcccccEEEEEEcccccc
Coil and Loop (DISEMBL)
mvvktrmvQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNkhnveglniarnagiptkvsTYKHTLILSNSLQVMQKVGakysdiapfsqdggetaelpglyqpgdydlagfaVGAVekasllpkvkdvaaGDVVIalpssgihsngFSLVLCftdgktvkvmppsqdhkrkynndkgpntggmgaycpcdilteaQKKEIHDTILMRVIKKMIAegtpfvgekkrgftegtVTAKVFSsrnrrekednpeegdp
Flexible Loop (DISEMBL)
mvvktrmvqrkrvavlisgtgtnlksLLEATSNRSDIMRAEIVLVVsnkhnveglniarnagiptkVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALpssgihsngFSLVLCFTDGKTVkvmppsqdhkrkynndkgpntgGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAegtpfvgekkrgftegtvtakvfssrnrrekednpeegdp
Low Complexity Region (SEG)
MVVKTRMVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP
Disordered region (IsUnstruct)
**********KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVK*********************GMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTV**********************
Disordered Region (DISOPRED)
***K***VQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD*
Disordered Region (DISEMBL)
********QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVF*****************
Disordered Region (DISPRO)
MVVKTRMVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVKTRMVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q3SS83	357	Phosphoribosylformylglyci	yes	N/A	0.281	0.207	0.613	3e-19
A7HYF2	363	Phosphoribosylformylglyci	yes	N/A	0.737	0.534	0.358	5e-19
P21872	1003	Trifunctional purine bios	yes	N/A	0.220	0.057	0.683	7e-19
Q215Q6	357	Phosphoribosylformylglyci	yes	N/A	0.224	0.165	0.766	9e-19
Q1QLI2	356	Phosphoribosylformylglyci	yes	N/A	0.224	0.165	0.733	2e-18
Q6FZK1	361	Phosphoribosylformylglyci	yes	N/A	0.224	0.163	0.716	3e-18
P22102	1010	Trifunctional purine bios	yes	N/A	0.262	0.068	0.577	3e-18
Q885Y1	352	Phosphoribosylformylglyci	yes	N/A	0.517	0.386	0.432	3e-18
Q48FI4	352	Phosphoribosylformylglyci	yes	N/A	0.517	0.386	0.432	3e-18
Q4ZQ51	352	Phosphoribosylformylglyci	yes	N/A	0.517	0.386	0.432	4e-18

>sp|Q3SS83|PUR5_NITWN Phosphoribosylformylglycinamidine cyclo-ligase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=purM PE=3 SV=1

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 1/75 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PGLY+ GDYDLAGFAVGA E+ SLLP  +D+AAGD VI L SSG+HSNG+SLV
Sbjct: 141 GGETAEMPGLYKDGDYDLAGFAVGAAERGSLLPG-RDIAAGDAVIGLASSGVHSNGYSLV 199

Query: 160 LCFTDGKTVKVMPPS 174
               +   + +  P+
Sbjct: 200 RNIVEASGIALSAPA 214

Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) (taxid: 323098)
EC: 6EC: .EC: 3EC: .EC: 3EC: .EC: 1

>sp|A7HYF2|PUR5_PARL1 Phosphoribosylformylglycinamidine cyclo-ligase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=purM PE=3 SV=1

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 112/229 (48%), Gaps = 35/229 (15%)

Query: 19  GTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHT--LIL 76
           G GT LK  +EA  +R D +  ++V +  N   V+G         P     Y  T  L +
Sbjct: 73  GVGTKLKVAIEA--DRHDTVGIDLVAMSVNDLVVQGAE-------PLFFLDYYATGKLHV 123

Query: 77  SNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD 136
             +  V+  + A+    A  +  GGETAE+PG+Y  GDYDLAGFAVGAVE+  +LP+  D
Sbjct: 124 DVARDVVAGI-AEGCRQAGCALIGGETAEMPGMYAKGDYDLAGFAVGAVERDGVLPR-GD 181

Query: 137 VAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGA-- 194
           VA GDV++ L SSG HSNGFSLV               +D++  Y+    P  GG GA  
Sbjct: 182 VAPGDVLLGLASSGFHSNGFSLVRRIV-----------EDNRISYS---APFPGGDGASI 227

Query: 195 ----YCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEG 239
                 P  I  +A  K I +T  ++ +  +   G  FV    R   EG
Sbjct: 228 GEVLLAPTRIYVKAMLKTIRETAAVKAVAHITGGG--FVENIPRVLPEG 274

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

>sp|P21872|PUR2_CHICK Trifunctional purine biosynthetic protein adenosine-3 OS=Gallus gallus GN=GART PE=2 SV=1

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 53/60 (88%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG+Y PG+YDLAGFAVGAVE+  +LP+++ +A GDVVI + SSG+HSNG+SLV
Sbjct: 568 GGETAEMPGMYPPGEYDLAGFAVGAVERGQMLPQLERIADGDVVIGVASSGVHSNGYSLV 627

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 2

>sp|Q215Q6|PUR5_RHOPB Phosphoribosylformylglycinamidine cyclo-ligase OS=Rhodopseudomonas palustris (strain BisB18) GN=purM PE=3 SV=1

 Score = 94.0 bits (232), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 51/60 (85%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PGLY  GDYDLAGFAVGA E+ +LLP  KD+AAGD VI L SSG+HSNGFSLV
Sbjct: 141 GGETAEMPGLYTDGDYDLAGFAVGAAERGTLLPG-KDIAAGDAVIGLASSGVHSNGFSLV 199

Rhodopseudomonas palustris (strain BisB18) (taxid: 316056)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

>sp|Q1QLI2|PUR5_NITHX Phosphoribosylformylglycinamidine cyclo-ligase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=purM PE=3 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/60 (73%), Positives = 52/60 (86%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PGLY+ GDYDLAGFAVGA E+ +LLP  +D+AAGD VI L SSG+HSNG+SLV
Sbjct: 141 GGETAEMPGLYKDGDYDLAGFAVGAAERGTLLPG-RDIAAGDAVIGLASSGVHSNGYSLV 199

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

>sp|Q6FZK1|PUR5_BARQU Phosphoribosylformylglycinamidine cyclo-ligase OS=Bartonella quintana (strain Toulouse) GN=purM PE=3 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 52/60 (86%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG+Y  GDYDLAGFAVGA E+++LLP  KD+A GD+++ L SSGIHSNGFSLV
Sbjct: 148 GGETAEMPGMYAKGDYDLAGFAVGATERSALLPS-KDLAEGDIILGLSSSGIHSNGFSLV 206

Bartonella quintana (strain Toulouse) (taxid: 283165)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

>sp|P22102|PUR2_HUMAN Trifunctional purine biosynthetic protein adenosine-3 OS=Homo sapiens GN=GART PE=1 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 48/71 (67%)

Query: 160 LCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219
           LCFTDGKTV  MPP+QDHKR    D GPNTGGMGAYCP   ++     +I DT+L R + 
Sbjct: 201 LCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVD 260

Query: 220 KMIAEGTPFVG 230
            M  EGTP+ G
Sbjct: 261 GMQQEGTPYTG 271

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 2

>sp|Q885Y1|PUR5_PSESM Phosphoribosylformylglycinamidine cyclo-ligase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=purM PE=3 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 85/148 (57%), Gaps = 12/148 (8%)

Query: 15  VLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHT 73
           VL+SGT G   K  L    N+ D +  ++V +  N   V G         P     Y  T
Sbjct: 59  VLVSGTDGVGTKLRLALNLNKHDTIGIDLVAMCVNDLVVCGAE-------PLFFLDYYAT 111

Query: 74  --LILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLL 131
             L +  + QV+  +GA   ++A  S  GGETAE+PG+Y+  DYDLAGF VG VEKA ++
Sbjct: 112 GKLNVDTAAQVVTGIGAG-CELAGCSLVGGETAEMPGMYEGEDYDLAGFCVGVVEKAEII 170

Query: 132 PKVKDVAAGDVVIALPSSGIHSNGFSLV 159
              K VAAGD ++ALPSSG HSNG+SL+
Sbjct: 171 DGSK-VAAGDALLALPSSGPHSNGYSLI 197

Pseudomonas syringae pv. tomato (strain DC3000) (taxid: 223283)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

>sp|Q48FI4|PUR5_PSE14 Phosphoribosylformylglycinamidine cyclo-ligase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=purM PE=3 SV=1

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 85/148 (57%), Gaps = 12/148 (8%)

Query: 15  VLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHT 73
           VL+SGT G   K  L    N+ D +  ++V +  N   V G         P     Y  T
Sbjct: 59  VLVSGTDGVGTKLRLALNLNKHDTIGIDLVAMCVNDLVVCGAE-------PLFFLDYYAT 111

Query: 74  --LILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLL 131
             L +  + QV+  +GA   ++A  S  GGETAE+PG+Y+  DYDLAGF VG VEKA ++
Sbjct: 112 GKLNVDTAAQVVTGIGAG-CELAGCSLVGGETAEMPGMYEGEDYDLAGFCVGVVEKAEII 170

Query: 132 PKVKDVAAGDVVIALPSSGIHSNGFSLV 159
              K VAAGD ++ALPSSG HSNG+SL+
Sbjct: 171 DGSK-VAAGDALLALPSSGPHSNGYSLI 197

Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) (taxid: 264730)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

>sp|Q4ZQ51|PUR5_PSEU2 Phosphoribosylformylglycinamidine cyclo-ligase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=purM PE=3 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 85/148 (57%), Gaps = 12/148 (8%)

Query: 15  VLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHT 73
           VL+SGT G   K  L    N+ D +  ++V +  N   V G         P     Y  T
Sbjct: 59  VLVSGTDGVGTKLRLALNLNKHDTIGIDLVAMCVNDLVVCGAE-------PLFFLDYYAT 111

Query: 74  --LILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLL 131
             L +  + QV+  +GA   ++A  S  GGETAE+PG+Y+  DYDLAGF VG VEKA ++
Sbjct: 112 GKLNVDTAAQVVTGIGAG-CELAGCSLVGGETAEMPGMYEGEDYDLAGFCVGVVEKAEII 170

Query: 132 PKVKDVAAGDVVIALPSSGIHSNGFSLV 159
              K VAAGD ++ALPSSG HSNG+SL+
Sbjct: 171 DGSK-VAAGDALLALPSSGPHSNGYSLI 197

Pseudomonas syringae pv. syringae (strain B728a) (taxid: 205918)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
390349450	1463	PREDICTED: trifunctional purine biosynth	0.593	0.106	0.417	2e-33
443724780	1027	hypothetical protein CAPTEDRAFT_90257 [C	0.247	0.063	0.692	2e-19
389751221	797	aminoimidazole ribonucleotide synthetase	0.509	0.168	0.446	2e-19
307209224	1008	Trifunctional purine biosynthetic protei	0.581	0.151	0.421	2e-19
242012671	995	phosphoribosylamine-glycine ligase, puta	0.520	0.137	0.425	3e-19
307191271	1008	Trifunctional purine biosynthetic protei	0.581	0.151	0.387	1e-18
393218185	808	bifunctional purine ADE1 [Fomitiporia me	0.224	0.073	0.766	2e-18
332019813	1036	Trifunctional purine biosynthetic protei	0.581	0.147	0.404	2e-18
383852304	1021	PREDICTED: trifunctional purine biosynth	0.532	0.137	0.370	2e-18
170084283	784	aminoimidazole ribonucleotide synthetase	0.224	0.075	0.75	2e-18

>gi|390349450|ref|XP_785897.3| PREDICTED: trifunctional purine biosynthetic protein adenosine-3-like isoform 2 [Strongylocentrotus purpuratus]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/187 (41%), Positives = 103/187 (55%), Gaps = 31/187 (16%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSL- 158
           GGETAE+PG+Y P +YDLAGF VGAVE+  +LP+  ++  GDVV+ + SSGIHSNG+SL 
Sbjct: 571 GGETAEMPGMYAPNEYDLAGFTVGAVERGHMLPRTDEIQVGDVVLGVASSGIHSNGYSLD 630

Query: 159 ----------------------VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYC 196
                                 VL F DG   + M P+QDHKR    D+GPNTGGMGAYC
Sbjct: 631 KLFGAAGESVIIEELLEGEEFSVLAFCDGSHFEAMLPAQDHKRVREGDQGPNTGGMGAYC 690

Query: 197 PCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKED 256
           PC  ++    ++I++ IL R +  M  +G P+ G    G         + +    R  E 
Sbjct: 691 PCPQVSRQVLQQINEEILQRAVGGMKEQGRPYKGVLYAGL--------MITKDGPRVLEF 742

Query: 257 NPEEGDP 263
           N   GDP
Sbjct: 743 NCRFGDP 749

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|443724780|gb|ELU12633.1| hypothetical protein CAPTEDRAFT_90257 [Capitella teleta]

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 55/65 (84%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG+Y PGDYDLAGFAVGAVE++  LP+  ++AAGD++I LPSSG+HSNGFSLV
Sbjct: 573 GGETAEMPGMYSPGDYDLAGFAVGAVERSQYLPRTSEMAAGDILIGLPSSGLHSNGFSLV 632

Query: 160 LCFTD 164
               D
Sbjct: 633 RRLVD 637

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|389751221|gb|EIM92294.1| aminoimidazole ribonucleotide synthetase [Stereum hirsutum FP-91666 SS1]

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/150 (44%), Positives = 94/150 (62%), Gaps = 16/150 (10%)

Query: 15  VLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
           VL+SGT   GT L+  ++A  +  D++  ++V +  N   V+G         P     Y 
Sbjct: 497 VLVSGTDGVGTKLRVAVDAGIH--DLVGIDLVAMSVNDLIVQGAE-------PLYFLDYY 547

Query: 72  --HTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKAS 129
               L +  + QV++ + A+   IA  +  GGETAE+PG+YQPGDYDLAGFAVGAVE++ 
Sbjct: 548 GCSKLEVDVASQVIKGI-AEGCQIAGCALIGGETAEMPGMYQPGDYDLAGFAVGAVERSQ 606

Query: 130 LLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           +LPK  D+  GDV++ LPSSG+HSNGFSLV
Sbjct: 607 ILPK-PDIKPGDVLLGLPSSGLHSNGFSLV 635

Source: Stereum hirsutum FP-91666 SS1

Species: Stereum hirsutum

Genus: Stereum

Family: Stereaceae

Order: Russulales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|307209224|gb|EFN86331.1| Trifunctional purine biosynthetic protein adenosine-3 [Harpegnathos saltator]

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 96/173 (55%), Gaps = 20/173 (11%)

Query: 15  VLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSN---KHNVEGLNIARNAGIPTKVS 68
           +L+SGT   GT LK   E   N+ D +  ++V +  N    HN E L          K+ 
Sbjct: 491 ILVSGTDGVGTKLKVAFEC--NKHDTVGIDLVAMCVNDILAHNAEPLFFLDYFAC-GKLD 547

Query: 69  TYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKA 128
               T +++   +     G K   +A     GGETAE+P +Y  G+YDLAGFAVGAVEK 
Sbjct: 548 VGVATTVVNGITE-----GCK---LAGCCLIGGETAEMPDMYSEGEYDLAGFAVGAVEKD 599

Query: 129 SLLPKVKDVAAGDVVIALPSSGIHSNGFSL---VLCFTDGKTVKVMPPSQDHK 178
           +LLP+V D+  GDVVI LPSSG+HSNGFSL   VL   D K   + P S+ +K
Sbjct: 600 NLLPRVNDIKEGDVVIGLPSSGVHSNGFSLVRKVLKIADKKYSDIAPFSKKNK 652

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012671|ref|XP_002427052.1| phosphoribosylamine-glycine ligase, putative [Pediculus humanus corporis] gi|212511302|gb|EEB14314.1| phosphoribosylamine-glycine ligase, putative [Pediculus humanus corporis]

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 86/148 (58%), Gaps = 11/148 (7%)

Query: 15  VLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHT 73
           VL+SGT G   K ++    N    +  ++V +  N       +I  N   P     Y   
Sbjct: 479 VLVSGTDGVGTKLVIAQACNLHSTIGIDLVAMCVN-------DILANGAEPLYFLDYFAC 531

Query: 74  LILSNSL--QVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLL 131
            IL  S+  ++++ + AK   +A  +  GGETAE+PG+Y PGDYDLAGFAVGAVE+  +L
Sbjct: 532 GILDVSVGCEIVEGI-AKGCKLAGCALIGGETAEMPGVYAPGDYDLAGFAVGAVERDKIL 590

Query: 132 PKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           P    +  GDVVI +PSSG+HSNGFSLV
Sbjct: 591 PLTDAIVPGDVVIGIPSSGVHSNGFSLV 618

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191271|gb|EFN74918.1| Trifunctional purine biosynthetic protein adenosine-3 [Camponotus floridanus]

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 20/173 (11%)

Query: 15  VLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSN---KHNVEGLNIARNAGIPTKVS 68
           +L+SGT   GT LK  +E   ++ D +  ++V +  N    HN E L         +K+ 
Sbjct: 492 ILVSGTDGVGTKLKIAIEC--DKHDTVGIDLVAMCVNDVLAHNAEPLFFLDYFAC-SKLD 548

Query: 69  TYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKA 128
                 +++   +  ++ G         S  GGETAE+P +Y+ G+YDLAGFAVGAVEK 
Sbjct: 549 VEVAAKVVNGIAEGCRQAGC--------SLIGGETAEMPDMYREGEYDLAGFAVGAVEKG 600

Query: 129 SLLPKVKDVAAGDVVIALPSSGIHSNGFSL---VLCFTDGKTVKVMPPSQDHK 178
           +LLP++ D+  GDVVI LPS+G+HSNGFSL   VL   D     V P S++++
Sbjct: 601 NLLPRIDDIEEGDVVIGLPSNGVHSNGFSLVRKVLKLADKSYSDVAPFSRNNR 653

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|393218185|gb|EJD03673.1| bifunctional purine ADE1 [Fomitiporia mediterranea MF3/22]

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 55/60 (91%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG+Y  GDYDLAGFAVGAVE++SLLPK  D++AGDV++ LPSSG+HSNGFSLV
Sbjct: 588 GGETAEMPGMYHGGDYDLAGFAVGAVERSSLLPK-SDISAGDVLLGLPSSGLHSNGFSLV 646

Source: Fomitiporia mediterranea MF3/22

Species: Fomitiporia mediterranea

Genus: Fomitiporia

Family: Hymenochaetaceae

Order: Hymenochaetales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|332019813|gb|EGI60274.1| Trifunctional purine biosynthetic protein adenosine-3 [Acromyrmex echinatior]

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 94/173 (54%), Gaps = 20/173 (11%)

Query: 15  VLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSN---KHNVEGLNIARNAGIPTKVS 68
           +L+SGT   GT LK  +E    + D +  ++V +  N    HN E L          K+ 
Sbjct: 520 ILVSGTDGVGTKLKIAIEC--KKHDTVGIDLVAMCVNDILAHNAEPLFFLDYFAC-GKLD 576

Query: 69  TYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKA 128
               T +++   +  ++ G         S  GGETAE+P +Y  G+YDLAGFAVGA EK 
Sbjct: 577 VEVATKVINGITEGCKQAGC--------SLVGGETAEMPDMYPEGEYDLAGFAVGAAEKG 628

Query: 129 SLLPKVKDVAAGDVVIALPSSGIHSNGFSL---VLCFTDGKTVKVMPPSQDHK 178
           +LLP V D+  GDV+I LPSSGIHSNGFSL   VL   D K   V P S+ ++
Sbjct: 629 NLLPCVNDIKEGDVIIGLPSSGIHSNGFSLVRKVLKLADKKFSDVAPFSRSNR 681

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852304|ref|XP_003701668.1| PREDICTED: trifunctional purine biosynthetic protein adenosine-3 [Megachile rotundata]

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/186 (37%), Positives = 98/186 (52%), Gaps = 46/186 (24%)

Query: 15  VLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSN---KHNVEGL------------- 55
           +L+SGT   GT LK   E   N+ D +  ++V +  N    HN E L             
Sbjct: 504 ILVSGTDGVGTKLKLAFEC--NKHDTIGIDLVAMCVNDVLAHNAEPLFFLDYFACGKLNV 561

Query: 56  NIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDY 115
           ++ARN              ++S   +  ++ G         S  GGETAE+P +Y  G+Y
Sbjct: 562 DVARN--------------VISGVSEGCKRAGC--------SLIGGETAEMPDMYSSGEY 599

Query: 116 DLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV---LCFTDGKTVKVMP 172
           DLAGFAVGAVE+ +LLP+  D+  GD+VI LPSSG+HSNGFSLV   L   + K   + P
Sbjct: 600 DLAGFAVGAVERNNLLPRTNDIEEGDIVIGLPSSGVHSNGFSLVRKILKLANKKYSDIAP 659

Query: 173 PSQDHK 178
            S++++
Sbjct: 660 FSKNNR 665

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170084283|ref|XP_001873365.1| aminoimidazole ribonucleotide synthetase [Laccaria bicolor S238N-H82] gi|164650917|gb|EDR15157.1| aminoimidazole ribonucleotide synthetase [Laccaria bicolor S238N-H82]

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 55/60 (91%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG+YQPGDYDLAGFAVGAVE+  LLP+ KD+AAGD+++ + SSG+HSNGFSLV
Sbjct: 571 GGETAEMPGMYQPGDYDLAGFAVGAVERDLLLPR-KDIAAGDIILGVASSGLHSNGFSLV 629

Source: Laccaria bicolor S238N-H82

Species: Laccaria bicolor

Genus: Laccaria

Family: Tricholomataceae

Order: Agaricales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
ZFIN|ZDB-GENE-000616-14	1017	gart "phosphoribosylglycinamid	0.285	0.073	0.56	5.7e-19
TIGR_CMR|APH_0202	344	APH_0202 "phosphoribosylformyl	0.304	0.232	0.552	1.6e-18
TIGR_CMR|APH_0210	344	APH_0210 "phosphoribosylformyl	0.304	0.232	0.552	1.6e-18
UNIPROTKB|F8WD69	306	GART "Phosphoribosylformylglyc	0.269	0.232	0.577	2.8e-18
UNIPROTKB|A0A547	1003	GART "Glycinamide ribonucleoti	0.228	0.059	0.683	6.5e-18
UNIPROTKB|P21872	1003	GART "Trifunctional purine bio	0.228	0.059	0.683	6.5e-18
UNIPROTKB|F1P3N9	1005	GART "Trifunctional purine bio	0.228	0.059	0.683	6.5e-18
UNIPROTKB|F1PTG8	1047	GART "Uncharacterized protein"	0.292	0.073	0.532	2.1e-17
RGD|1308717	433	Gart "phosphoribosylglycinamid	0.475	0.288	0.404	2.4e-17
TIGR_CMR|CBU_1736	352	CBU_1736 "phosphoribosylformyl	0.509	0.380	0.393	2.8e-17

ZFIN|ZDB-GENE-000616-14 gart "phosphoribosylglycinamide formyltransferase" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 5.7e-19, P = 5.7e-19
 Identities = 42/75 (56%), Positives = 60/75 (80%)

Query:   100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
             GGETAE+PG+Y PG+YDLAGF VGAVE+++LLP++KD++ GD+++ + SSGIHSNGFSLV
Sbjct:   569 GGETAEMPGVYPPGEYDLAGFCVGAVERSALLPRLKDISEGDLLLGVSSSGIHSNGFSLV 628

Query:   160 LCFTDGKTVKVMPPS 174
                 +   + +  P+
Sbjct:   629 RTILERSGLNISSPA 643

GO:0046872 "metal ion binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004637 "phosphoribosylamine-glycine ligase activity" evidence=IEA

GO:0004644 "phosphoribosylglycinamide formyltransferase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA

GO:0004641 "phosphoribosylformylglycinamidine cyclo-ligase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

GO:0043010 "camera-type eye development" evidence=IMP

GO:0043473 "pigmentation" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

TIGR_CMR|APH_0202 APH_0202 "phosphoribosylformylglycinamidine cyclo-ligase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 224 (83.9 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 47/85 (55%), Positives = 62/85 (72%)

Query:    77 SNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKV 134
             S +L+V++ +  G K   +A  S  GGETAE+PG+Y  G YDLAGF VG VE+  +LPK+
Sbjct:   115 SVALEVLRGISHGCK---LAGASLVGGETAEMPGMYSRGHYDLAGFTVGIVEREDILPKL 171

Query:   135 KDVAAGDVVIALPSSGIHSNGFSLV 159
               + AGDV++ LPSSG+HSNGFSLV
Sbjct:   172 DLIQAGDVILGLPSSGLHSNGFSLV 196

GO:0004641 "phosphoribosylformylglycinamidine cyclo-ligase activity" evidence=ISS

GO:0006189 "'de novo' IMP biosynthetic process" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

TIGR_CMR|APH_0210 APH_0210 "phosphoribosylformylglycinamidine cyclo-ligase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 224 (83.9 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 47/85 (55%), Positives = 62/85 (72%)

Query:    77 SNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKV 134
             S +L+V++ +  G K   +A  S  GGETAE+PG+Y  G YDLAGF VG VE+  +LPK+
Sbjct:   115 SVALEVLRGISHGCK---LAGASLVGGETAEMPGMYSRGHYDLAGFTVGIVEREDILPKL 171

Query:   135 KDVAAGDVVIALPSSGIHSNGFSLV 159
               + AGDV++ LPSSG+HSNGFSLV
Sbjct:   172 DLIQAGDVILGLPSSGLHSNGFSLV 196

GO:0004641 "phosphoribosylformylglycinamidine cyclo-ligase activity" evidence=ISS

GO:0006189 "'de novo' IMP biosynthetic process" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

UNIPROTKB|F8WD69 GART "Phosphoribosylformylglycinamidine cyclo-ligase" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 41/71 (57%), Positives = 48/71 (67%)

Query:   160 LCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219
             LCFTDGKTV  MPP+QDHKR    D GPNTGGMGAYCP   ++     +I DT+L R + 
Sbjct:   201 LCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVD 260

Query:   220 KMIAEGTPFVG 230
              M  EGTP+ G
Sbjct:   261 GMQQEGTPYTG 271

GO:0004637 "phosphoribosylamine-glycine ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|A0A547 GART "Glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase" [Gallus gallus (taxid:9031)]

 Score = 230 (86.0 bits), Expect = 6.5e-18, P = 6.5e-18
 Identities = 41/60 (68%), Positives = 53/60 (88%)

Query:   100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
             GGETAE+PG+Y PG+YDLAGFAVGAVE+  +LP+++ +A GDVVI + SSG+HSNG+SLV
Sbjct:   568 GGETAEMPGMYPPGEYDLAGFAVGAVERGQMLPQLERIADGDVVIGVASSGVHSNGYSLV 627

GO:0004637 "phosphoribosylamine-glycine ligase activity" evidence=IEA

GO:0004641 "phosphoribosylformylglycinamidine cyclo-ligase activity" evidence=IEA

GO:0004644 "phosphoribosylglycinamide formyltransferase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|P21872 GART "Trifunctional purine biosynthetic protein adenosine-3" [Gallus gallus (taxid:9031)]

 Score = 230 (86.0 bits), Expect = 6.5e-18, P = 6.5e-18
 Identities = 41/60 (68%), Positives = 53/60 (88%)

Query:   100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
             GGETAE+PG+Y PG+YDLAGFAVGAVE+  +LP+++ +A GDVVI + SSG+HSNG+SLV
Sbjct:   568 GGETAEMPGMYPPGEYDLAGFAVGAVERGQMLPQLERIADGDVVIGVASSGVHSNGYSLV 627

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004637 "phosphoribosylamine-glycine ligase activity" evidence=IEA

GO:0004641 "phosphoribosylformylglycinamidine cyclo-ligase activity" evidence=IEA

GO:0004644 "phosphoribosylglycinamide formyltransferase activity" evidence=IEA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006144 "purine nucleobase metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

UNIPROTKB|F1P3N9 GART "Trifunctional purine biosynthetic protein adenosine-3" [Gallus gallus (taxid:9031)]

 Score = 230 (86.0 bits), Expect = 6.5e-18, P = 6.5e-18
 Identities = 41/60 (68%), Positives = 53/60 (88%)

Query:   100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
             GGETAE+PG+Y PG+YDLAGFAVGAVE+  +LP+++ +A GDVVI + SSG+HSNG+SLV
Sbjct:   568 GGETAEMPGMYPPGEYDLAGFAVGAVERGQMLPQLERIADGDVVIGVASSGVHSNGYSLV 627

GO:0004637 "phosphoribosylamine-glycine ligase activity" evidence=IEA

GO:0004641 "phosphoribosylformylglycinamidine cyclo-ligase activity" evidence=IEA

GO:0004644 "phosphoribosylglycinamide formyltransferase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1PTG8 GART "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 216 (81.1 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 41/77 (53%), Positives = 55/77 (71%)

Query:   100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
             GGETAE+P +Y PG+YDLAGFAVGA+E+   LP ++ +  GDVVI + SSG+HSNGFSLV
Sbjct:   605 GGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHLERITEGDVVIGIASSGLHSNGFSLV 664

Query:   160 LCFTDGKTVKVMPPSQD 176
                    +++   P+ D
Sbjct:   665 RKIVAKSSLQYSSPAPD 681

GO:0046872 "metal ion binding" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004644 "phosphoribosylglycinamide formyltransferase activity" evidence=IEA

GO:0004641 "phosphoribosylformylglycinamidine cyclo-ligase activity" evidence=IEA

GO:0004637 "phosphoribosylamine-glycine ligase activity" evidence=IEA

RGD|1308717 Gart "phosphoribosylglycinamide formyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 55/136 (40%), Positives = 72/136 (52%)

Query:   103 TAELPGLYQPGDYDLAGFAV-GAVEKASLLPKVKDV-------AAGDVVIALPSSGIHSN 154
             +A+ P L        AG  V  A  KA     V+++       AAG+ V+      +   
Sbjct:   139 SADFPALVVKASGLAAGKGVIVAKSKAEACEAVQEIMQEKSFGAAGETVVV--EELLEGE 196

Query:   155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTIL 214
               S  LCFTDGKTV  MPP+QDHKR  + D+GPNTGGMGAYCP   + +    +I +TIL
Sbjct:   197 EVSC-LCFTDGKTVAPMPPAQDHKRLLDGDRGPNTGGMGAYCPAPQVPKDLLVKIKNTIL 255

Query:   215 MRVIKKMIAEGTPFVG 230
              R +  M  EG P+ G
Sbjct:   256 QRTVDGMQQEGVPYTG 271

GO:0003360 "brainstem development" evidence=IEP

GO:0004637 "phosphoribosylamine-glycine ligase activity" evidence=IDA

GO:0004641 "phosphoribosylformylglycinamidine cyclo-ligase activity" evidence=IDA

GO:0004644 "phosphoribosylglycinamide formyltransferase activity" evidence=IDA

GO:0006544 "glycine metabolic process" evidence=IDA

GO:0009156 "ribonucleoside monophosphate biosynthetic process" evidence=IDA

GO:0009235 "cobalamin metabolic process" evidence=TAS

GO:0010033 "response to organic substance" evidence=IDA

GO:0010035 "response to inorganic substance" evidence=IDA

GO:0021549 "cerebellum development" evidence=IEP

GO:0021987 "cerebral cortex development" evidence=IEP

GO:0046654 "tetrahydrofolate biosynthetic process" evidence=IDA

TIGR_CMR|CBU_1736 CBU_1736 "phosphoribosylformylglycinamidine cyclo-ligase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 214 (80.4 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 59/150 (39%), Positives = 84/150 (56%)

Query:    15 VLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
             VL+SGT   GT LK  +E   NR D +  ++V +  N       ++      P     Y 
Sbjct:    65 VLVSGTDGVGTKLKLAVEL--NRHDTIGIDLVAMCVN-------DVITTGAEPLFFLDYY 115

Query:    72 HTLILSN--SLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKAS 129
              T  L+N  + Q++  +GA   ++A  +  GGETAE+PGLY+  DYDLAGF VG VEK  
Sbjct:   116 ATGHLNNEQAKQILTGIGAG-CELAEVALIGGETAEMPGLYRQKDYDLAGFCVGVVEKEK 174

Query:   130 LLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
             ++   + V  GD +I + SSG HSNG+SL+
Sbjct:   175 IIDGSR-VRVGDALIGIASSGPHSNGYSLI 203

GO:0004641 "phosphoribosylformylglycinamidine cyclo-ligase activity" evidence=ISS

GO:0006189 "'de novo' IMP biosynthetic process" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.4.13	LOW CONFIDENCE prediction!
3rd Layer	6.3.3.1	LOW CONFIDENCE prediction!
3rd Layer	6.3.3	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	263
PRK05385	327	PRK05385, PRK05385, phosphoribosylaminoimidazole s	6e-33
cd02196	297	cd02196, PurM, PurM (Aminoimidazole Ribonucleotide	6e-32
PRK00885	420	PRK00885, PRK00885, phosphoribosylamine--glycine l	9e-30
pfam01071	193	pfam01071, GARS_A, Phosphoribosylglycinamide synth	1e-29
COG0150	345	COG0150, PurM, Phosphoribosylaminoimidazole (AIR)	5e-28
COG0151	428	COG0151, PurD, Phosphoribosylamine-glycine ligase	7e-27
TIGR00878	332	TIGR00878, purM, phosphoribosylaminoimidazole synt	6e-26
TIGR00877	422	TIGR00877, purD, phosphoribosylamine--glycine liga	6e-26
PLN02557	379	PLN02557, PLN02557, phosphoribosylformylglycinamid	1e-23
PLN02257	434	PLN02257, PLN02257, phosphoribosylamine--glycine l	8e-17
cd08645	183	cd08645, FMT_core_GART, Phosphoribosylglycinamide	5e-16
PRK05647	200	PRK05647, purN, phosphoribosylglycinamide formyltr	2e-14
PRK13789	426	PRK13789, PRK13789, phosphoribosylamine--glycine l	3e-14
COG0299	200	COG0299, PurN, Folate-dependent phosphoribosylglyc	8e-14
PRK13790	379	PRK13790, PRK13790, phosphoribosylamine--glycine l	1e-13
TIGR00639	190	TIGR00639, PurN, phosphoribosylglycinamide formylt	3e-11
PRK06395	435	PRK06395, PRK06395, phosphoribosylamine--glycine l	7e-10
pfam00551	181	pfam00551, Formyl_trans_N, Formyl transferase	1e-09
PRK05784	486	PRK05784, PRK05784, phosphoribosylamine--glycine l	4e-07
PLN02331	207	PLN02331, PLN02331, phosphoribosylglycinamide form	2e-06
pfam02769	150	pfam02769, AIRS_C, AIR synthase related protein, C	0.004

>gnl|CDD|235439 PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional

 Score =  122 bits (308), Expect = 6e-33
 Identities = 39/60 (65%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG+Y  GDYDLAGFAVG VEK  ++     V  GDV+I L SSG+HSNG+SLV
Sbjct: 133 GGETAEMPGMYHEGDYDLAGFAVGVVEKDKIIDG-SKVKEGDVLIGLASSGLHSNGYSLV 191

Length = 327

>gnl|CDD|100032 cd02196, PurM, PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis

 Score =  118 bits (299), Expect = 6e-32
 Identities = 38/60 (63%), Positives = 47/60 (78%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG+Y  G+YDLAGFAVG VEK  ++     +  GDV+I LPSSG+HSNG+SLV
Sbjct: 101 GGETAEMPGVYAEGEYDLAGFAVGVVEKDKIIDG-SKIKPGDVLIGLPSSGLHSNGYSLV 159

The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP. Length = 297

>gnl|CDD|234856 PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional

 Score =  115 bits (290), Expect = 9e-30
 Identities = 32/72 (44%), Positives = 44/72 (61%)

Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
              F DG+ V  +P +QDHKR  + D GPNTGGMGAY P  ++TE   + + + I+   +
Sbjct: 195 FFAFVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTV 254

Query: 219 KKMIAEGTPFVG 230
           K M AEG P+ G
Sbjct: 255 KGMAAEGIPYTG 266

Length = 420

>gnl|CDD|216282 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain

 Score =  110 bits (276), Expect = 1e-29
 Identities = 37/72 (51%), Positives = 46/72 (63%)

Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
           VL F DGKTVK +PP+QDHKR    D GPNTGGMGAY P  +LT    + I +TI+   +
Sbjct: 95  VLAFVDGKTVKPLPPAQDHKRLGEGDTGPNTGGMGAYSPAPVLTPELLERIKETIVEPTV 154

Query: 219 KKMIAEGTPFVG 230
             +  EG P+ G
Sbjct: 155 DGLRKEGIPYKG 166

Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786). Length = 193

>gnl|CDD|223228 COG0150, PurM, Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]

 Score =  109 bits (274), Expect = 5e-28
 Identities = 39/60 (65%), Positives = 47/60 (78%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG+Y+ GDYDLAGFAVG VEK  ++     V  GDV+I L SSG+HSNG+SLV
Sbjct: 136 GGETAEMPGMYRGGDYDLAGFAVGVVEKDEIIDG-SKVKEGDVIIGLASSGLHSNGYSLV 194

Length = 345

>gnl|CDD|223229 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]

 Score =  107 bits (269), Expect = 7e-27
 Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 156 FSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILM 215
           FSL   F DGKTV  MP +QDHKR Y+ D GPNTGGMGAY P   +T+   +   + I+ 
Sbjct: 194 FSL-QAFVDGKTVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVE 252

Query: 216 RVIKKMIAEGTPFVG 230
             ++ M  EG PF G
Sbjct: 253 PTVEGMAKEGYPFRG 267

Length = 428

>gnl|CDD|162083 TIGR00878, purM, phosphoribosylaminoimidazole synthetase

 Score =  103 bits (259), Expect = 6e-26
 Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 6/81 (7%)

Query: 81  QVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVA 138
           Q+++ +  G K +  A     GGETAE+PG+Y+ G YDLAG AVG VEK  ++   + V 
Sbjct: 115 QIVKGIAEGCKQAGCALV---GGETAEMPGMYRGGHYDLAGTAVGVVEKDEIITG-EKVK 170

Query: 139 AGDVVIALPSSGIHSNGFSLV 159
            GDV+I L SSGIHSNG SLV
Sbjct: 171 PGDVLIGLGSSGIHSNGLSLV 191

Alternate name: phosphoribosylformylglycinamidine cyclo-ligase; AIRS; AIR synthase This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 332

>gnl|CDD|233164 TIGR00877, purD, phosphoribosylamine--glycine ligase

 Score =  104 bits (262), Expect = 6e-26
 Identities = 39/72 (54%), Positives = 48/72 (66%)

Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
           +L F DGKTV  MPP+QDHKR    DKGPNTGGMGAY P  + TE  ++ I + I+   +
Sbjct: 196 LLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVERRIAEEIVEPTV 255

Query: 219 KKMIAEGTPFVG 230
           K M  EGTP+ G
Sbjct: 256 KAMRKEGTPYKG 267

Alternate name: glycinamide ribonucleotide synthetase (GARS). This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 422

>gnl|CDD|178172 PLN02557, PLN02557, phosphoribosylformylglycinamidine cyclo-ligase

 Score = 98.0 bits (244), Expect = 1e-23
 Identities = 39/60 (65%), Positives = 51/60 (85%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG Y  G+YDL+GFAVG+V+K +++   K++ AGDV+I LPSSG+HSNGFSLV
Sbjct: 178 GGETAEMPGFYAEGEYDLSGFAVGSVKKDAVIDG-KNIVAGDVLIGLPSSGVHSNGFSLV 236

Length = 379

>gnl|CDD|177899 PLN02257, PLN02257, phosphoribosylamine--glycine ligase

 Score = 79.0 bits (195), Expect = 8e-17
 Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 12/106 (11%)

Query: 138 AAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCP 197
           A  +VV+     G  ++ F+LV    DG+    +  +QDHKR  + D GPNTGGMGAY P
Sbjct: 178 AGSEVVVEEFLDGEEASFFALV----DGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSP 233

Query: 198 CDILTEAQKKEIHDTILMRVIKKMIAEGTPFVG--------EKKRG 235
             +LT   + ++ +TI+   +K M AEG  FVG        EKK G
Sbjct: 234 APVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG 279

Length = 434

>gnl|CDD|187714 cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)

 Score = 73.6 bits (182), Expect = 5e-16
 Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 2/60 (3%)

Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
          R+AVL SG+G+NL++L++A   +S  + AEIVLV+SN  +  GL  A+ AGIPT V   K
Sbjct: 1  RIAVLASGSGSNLQALIDAI--KSGKLNAEIVLVISNNPDAYGLERAKKAGIPTFVINRK 58

Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities. Length = 183

>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed

 Score = 69.4 bits (171), Expect = 2e-14
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
          KR+ VL SG G+NL+++++A    +  + AEIV V+S++ +  GL  A  AGIPT V
Sbjct: 2  KRIVVLASGNGSNLQAIIDAC--AAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFV 56

Length = 200

>gnl|CDD|184327 PRK13789, PRK13789, phosphoribosylamine--glycine ligase; Provisional

 Score = 71.5 bits (175), Expect = 3e-14
 Identities = 28/74 (37%), Positives = 47/74 (63%)

Query: 157 SLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMR 216
           + +   +DG +  ++P +QDHKR ++ D+GPNTGGMGAYCP  ++TEA  +++ + I   
Sbjct: 199 ASIFAISDGDSYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDP 258

Query: 217 VIKKMIAEGTPFVG 230
           +      +G P+ G
Sbjct: 259 MFDDFRKKGHPYRG 272

Length = 426

>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]

 Score = 67.6 bits (166), Expect = 8e-14
 Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
          K++AVL SG G+NL+++++A   +   + AEIV V+S+K +   L  A  AGIPT V
Sbjct: 1  KKIAVLASGNGSNLQAIIDAI--KGGKLDAEIVAVISDKADAYALERAAKAGIPTVV 55

Length = 200

>gnl|CDD|237507 PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query: 174 SQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVG 230
           +QDHKR +++D+GPNTGGMGAYCP   +++   K  ++TI   + K M+ EG  F G
Sbjct: 172 AQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFG 228

Length = 379

>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)

Query: 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
          KR+ VLISG G+NL+++++A   +   + A +VLV+SNK +  GL  A  AGIPT V
Sbjct: 1  KRIVVLISGNGSNLQAIIDAC--KEGKIPASVVLVISNKPDAYGLERAAQAGIPTFV 55

This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (Pfam family pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 190

>gnl|CDD|102357 PRK06395, PRK06395, phosphoribosylamine--glycine ligase; Provisional

 Score = 58.4 bits (141), Expect = 7e-10
 Identities = 34/78 (43%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 156 FSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDI-LTEAQKKEIHDT-- 212
           FSL   F+DGK +  MP  QD+KR Y  D GPNTGGMG+    D  L    K        
Sbjct: 195 FSL-QAFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKH 253

Query: 213 ILMRVIKKMIAEGTPFVG 230
           IL  +I+ M  E  PF G
Sbjct: 254 ILNDIIRAMKDENNPFKG 271

Length = 435

>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
           ++AVLISGTG+NL++LL+A          EIV VV+NK    GL  A  AGIP +V
Sbjct: 1  MKIAVLISGTGSNLQALLDALRKGGH--EVEIVAVVTNKDKAAGLERAEQAGIPVEV 55

This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA contains a related domain of unknown function. PRTH_PORGI contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function. Length = 181

>gnl|CDD|180256 PRK05784, PRK05784, phosphoribosylamine--glycine ligase; Provisional

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCD----ILTEAQKKEIHDTILMRV 217
            TDG+TV  +P +QD+   Y +  GP TGGMG+          + E + +E  + I+ R 
Sbjct: 215 LTDGETVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVE-IVKRT 273

Query: 218 IKKMIAEGTPFVGEKKRGFTEG 239
           I  +  E     GE+  G   G
Sbjct: 274 IDAIYKE----TGERYVGVISG 291

Length = 486

>gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPT 65
          ++AV +SG G+N +++ +A  +    +  ++V+VV+NK    G   AR  GIP 
Sbjct: 1  KLAVFVSGGGSNFRAIHDACLDGR--VNGDVVVVVTNKPGCGGAEYARENGIPV 52

Length = 207

>gnl|CDD|217219 pfam02769, AIRS_C, AIR synthase related protein, C-terminal domain

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 138 AAGDVVIALPSSGIHSNGFSLVL-CFTDGKTVKVMPPSQDHKRKY 181
             GDV+I L SSG+H +G SLV     D   V +  P  +    Y
Sbjct: 1   KPGDVLILLGSSGLHGSGLSLVRKGLEDDGAVPLGDPLLEPTLIY 45

This family includes Hydrogen expression/formation protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The function of the C-terminal domain of AIR synthase is unclear, but the cleft formed between N and C domains is postulated as a sulphate binding site. Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
COG0299	200	PurN Folate-dependent phosphoribosylglycinamide fo	100.0
KOG3076|consensus	206		100.0
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071	194	GARS_A: Phosphoribosylglycinamide synthetase, ATP-	99.98
COG0151	428	PurD Phosphoribosylamine-glycine ligase [Nucleotid	99.97
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	99.97
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	99.97
PLN02331	207	phosphoribosylglycinamide formyltransferase	99.97
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	99.97
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	99.97
KOG0237|consensus	788		99.96
PLN02828	268	formyltetrahydrofolate deformylase	99.96
TIGR00639	190	PurN phosphoribosylglycinamide formyltransferase,	99.95
PRK05647	200	purN phosphoribosylglycinamide formyltransferase;	99.94
COG0150	345	PurM Phosphoribosylaminoimidazole (AIR) synthetase	99.92
KOG0237|consensus	788		99.89
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	99.87
PF00551	181	Formyl_trans_N: Formyl transferase; InterPro: IPR0	99.86
PRK13789	426	phosphoribosylamine--glycine ligase; Provisional	99.83
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	99.8
PLN02285	334	methionyl-tRNA formyltransferase	99.79
PRK05784	486	phosphoribosylamine--glycine ligase; Provisional	99.77
PLN02257	434	phosphoribosylamine--glycine ligase	99.73
PRK06988	312	putative formyltransferase; Provisional	99.63
PRK13790	379	phosphoribosylamine--glycine ligase; Provisional	99.61
COG0223	307	Fmt Methionyl-tRNA formyltransferase [Translation,	99.57
TIGR00460	313	fmt methionyl-tRNA formyltransferase. The top-scor	99.53
PRK00005	309	fmt methionyl-tRNA formyltransferase; Reviewed	99.52
PRK00885	420	phosphoribosylamine--glycine ligase; Provisional	99.46
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.44
PRK07579	245	hypothetical protein; Provisional	99.28
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	99.26
PLN02557	379	phosphoribosylformylglycinamidine cyclo-ligase	99.12
KOG2452|consensus	881		97.54
KOG3082|consensus	338		97.05
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	96.59
TIGR00878	332	purM phosphoribosylaminoimidazole synthetase. This	96.55
cd02196	297	PurM PurM (Aminoimidazole Ribonucleotide [AIR] syn	96.43
PRK05385	327	phosphoribosylaminoimidazole synthetase; Provision	96.35
cd06061	298	PurM-like1 AIR synthase (PurM) related protein, su	95.55
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	95.37
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.27
PLN02735	1102	carbamoyl-phosphate synthase	95.16
TIGR02124	320	hypE hydrogenase expression/formation protein HypE	94.71
cd02197	293	HypE HypE (Hydrogenase expression/formation protei	94.36
cd02195	287	SelD Selenophosphate synthetase (SelD) catalyzes t	94.02
TIGR00476	347	selD selenium donor protein. In prokaryotes, the i	93.28
PRK12815	1068	carB carbamoyl phosphate synthase large subunit; R	93.27
PRK00943	347	selenophosphate synthetase; Provisional	92.99
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	92.97
PRK07206	416	hypothetical protein; Provisional	92.58
PRK06111	450	acetyl-CoA carboxylase biotin carboxylase subunit;	92.53
cd02691	346	PurM-like2 AIR synthase (PurM) related protein, ar	92.22
PRK05294	1066	carB carbamoyl phosphate synthase large subunit; R	92.22
PF02655	161	ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806	91.95
cd00396	222	PurM-like AIR (aminoimidazole ribonucleotide) synt	91.9
TIGR01369	1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	91.71
PRK05731	318	thiamine monophosphate kinase; Provisional	91.45
cd02192	283	PurM-like3 AIR synthase (PurM) related protein, su	91.31
cd02194	291	ThiL ThiL (Thiamine-monophosphate kinase) plays a	91.17
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	91.1
PRK01372	304	ddl D-alanine--D-alanine ligase; Reviewed	90.81
TIGR01379	317	thiL thiamine-monophosphate kinase. Proteins scori	90.44
TIGR01205	315	D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a	90.3
TIGR03267	323	methan_mark_2 putative methanogenesis marker prote	89.85
PRK02186	887	argininosuccinate lyase; Provisional	89.78
PRK12815	1068	carB carbamoyl phosphate synthase large subunit; R	89.3
PRK14105	345	selenophosphate synthetase; Provisional	89.06
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	88.83
COG0309	339	HypE Hydrogenase maturation factor [Posttranslatio	87.86
PF02786	211	CPSase_L_D2: Carbamoyl-phosphate synthase L chain,	87.8
PRK14571	299	D-alanyl-alanine synthetase A; Provisional	86.88
TIGR00514	449	accC acetyl-CoA carboxylase, biotin carboxylase su	86.6
PRK05294	1066	carB carbamoyl phosphate synthase large subunit; R	85.46
cd02203	313	PurL_repeat1 PurL subunit of the formylglycinamide	85.45
PLN02735	1102	carbamoyl-phosphate synthase	85.19
TIGR01369	1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	84.85
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	84.65
COG2144	324	Selenophosphate synthetase-related proteins [Gener	84.14
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	82.83
PRK01966	333	ddl D-alanyl-alanine synthetase A; Reviewed	82.78
PRK08591	451	acetyl-CoA carboxylase biotin carboxylase subunit;	80.67
PRK12833	467	acetyl-CoA carboxylase biotin carboxylase subunit;	80.35

>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]

Probab=100.00  E-value=1.7e-42  Score=294.75  Aligned_cols=176  Identities=27%  Similarity=0.362  Sum_probs=155.4

Q ss_pred             ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615         11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK   89 (263)
Q Consensus        11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~   89 (263)
                      +||+||+||+|||||+|+++  ++.+.++++|++|+||+++|++++||+++|||++++++++|+++ +++.++++.+  +
T Consensus         1 ~ki~VlaSG~GSNlqaiida--~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l--~   76 (200)
T COG0299           1 KKIAVLASGNGSNLQAIIDA--IKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEAL--D   76 (200)
T ss_pred             CeEEEEEeCCcccHHHHHHH--HhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHH--H
Confidence            58999999999999999987  45567789999999999999999999999999999999999877 8999999988  7


Q ss_pred             cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615         90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF  162 (263)
Q Consensus        90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai  162 (263)
                      .                   +++|+++|||||+.+    ++  +++++|+||||        ||+ +|+|+++.++    
T Consensus        77 ~-------------------~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSL--------LP~f~G~h~~~~A~----  125 (200)
T COG0299          77 E-------------------YGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSL--------LPAFPGLHAHEQAL----  125 (200)
T ss_pred             h-------------------cCCCEEEEcchHHHcCHHHHHHhhcceEecCccc--------ccCCCCchHHHHHH----
Confidence            7                   999999999999942    22  47899999999        998 8999887554    


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCCCe
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGTPF  228 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~~~  228 (263)
                       + .+++.+||| +|    ++|+|+||||+++|..||+.++|+.+++++|       +|+.+++++.+....-
T Consensus       126 -~-aG~k~sG~T-VH----~V~e~vD~GpII~Q~~Vpv~~~Dt~etl~~RV~~~Eh~lyp~~v~~~~~g~~~~  191 (200)
T COG0299         126 -E-AGVKVSGCT-VH----FVTEGVDTGPIIAQAAVPVLPGDTAETLEARVLEQEHRLYPLAVKLLAEGRLKI  191 (200)
T ss_pred             -H-cCCCccCcE-EE----EEccCCCCCCeEEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCccee
Confidence             2 567889999 58    9999999999999999999999999988775       6999999998765443

>KOG3076|consensus

Probab=100.00  E-value=1.2e-34  Score=244.03  Aligned_cols=175  Identities=29%  Similarity=0.354  Sum_probs=148.6

Q ss_pred             CccEEEEEcCcchhHHHHHHHhccccCCC--CceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHh
Q psy13615         10 RKRVAVLISGTGTNLKSLLEATSNRSDIM--RAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKV   86 (263)
Q Consensus        10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l--~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l   86 (263)
                      ++|+++|+||+|||||+|+++  .+.+.+  .++|++|+||+.+|+|++||+++|||+.+++++.|.++ .++.++.+.+
T Consensus         6 r~rvavliSGtGsNlqaLid~--~r~~~l~~~a~VvlviSnk~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~~~l   83 (206)
T KOG3076|consen    6 RARVAVLISGTGSNLQALIDA--TRDGSLGPNADVVLVISNKKGVYGLERAADAGIPTLVIPHKRFASREKYDNELAEVL   83 (206)
T ss_pred             ceeEEEEEecCchhHHHHHHh--hcCCCcCCCceEEEEEeccccchhhhHHHHCCCCEEEeccccccccccCcHHHHHHH
Confidence            348999999999999999976  566666  78999999999999999999999999999999887665 5556666666


Q ss_pred             ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeE----Eee--cCCcCCccccccCCcEEEEecC-CCCCcccccee
Q psy13615         87 GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVG----AVE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLV  159 (263)
Q Consensus        87 ~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~----~~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~  159 (263)
                        .+                   +++|+++|||||+.    +++  +++++|+||+|        ||+ .|.|+.+.++ 
T Consensus        84 --~e-------------------~~~d~v~lAG~M~iLs~~fl~~~~~~iiNIHPaL--------lpaFkG~~a~k~Al-  133 (206)
T KOG3076|consen   84 --LE-------------------LGTDLVCLAGYMRILSGEFLSQLPKRIINIHPAL--------LPAFKGLHAIKQAL-  133 (206)
T ss_pred             --HH-------------------hCCCEEEehhhHHHcCHHHHhhcccceEeccccc--------ccccCCchHHHHHH-
Confidence              56                   89999999999983    222  46799999999        998 8988766443 


Q ss_pred             EEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        160 LCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       160 ~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                          + .+++.+||| .|    |++++.|||.+++|.++|+.+.|+.+++++|       ++++++.+..++..
T Consensus       134 ----e-agv~~~Gct-vH----fV~EevD~G~iI~q~~v~V~~~Dt~esl~qrv~~aEH~~~~~Ai~~v~~~~~  197 (206)
T KOG3076|consen  134 ----E-AGVKLSGCT-VH----FVIEEVDTGPIIAQMAVPVIPGDTLESLEQRVHDAEHKAFVEAIKAVCEGRV  197 (206)
T ss_pred             ----H-hccccccce-EE----EehhhccCCCceEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                2 568899999 58    9999999999999999999999999998876       48888888876544

>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6

Probab=99.98  E-value=2.1e-33  Score=241.82  Aligned_cols=112  Identities=40%  Similarity=0.622  Sum_probs=95.3

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK  219 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~  219 (263)
                      ..+||+....|   .++|+. +++||.++.++|++|||||++++|.||||||||+++|+|++++++.+++.++|+.|+++
T Consensus        81 ~~vvIEE~l~G---~E~S~~-a~~dG~~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt~~  156 (194)
T PF01071_consen   81 SKVVIEEFLEG---EEVSLF-ALTDGKNFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPTLK  156 (194)
T ss_dssp             SSEEEEE---S---EEEEEE-EEEESSEEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHHHH
T ss_pred             CcEEEEeccCC---eEEEEE-EEEcCCeEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHHHH
Confidence            35556655554   558876 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      +|++||++|+|+||+|||.+.        .|++|+|||+|||||
T Consensus       157 ~l~~eg~~y~GvLy~glMlt~--------~Gp~vlEfN~RfGDP  192 (194)
T PF01071_consen  157 GLKKEGIPYRGVLYAGLMLTE--------DGPKVLEFNVRFGDP  192 (194)
T ss_dssp             HHHHTT---EEEEEEEEEEET--------TEEEEEEEESSGSTT
T ss_pred             HHHhcCCCcceeeeeeeEEeC--------CCcEEEEEeCCCCCC
Confidence            999999999999999999554        445677999999999

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....

>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]

Probab=99.97  E-value=5.2e-32  Score=253.31  Aligned_cols=210  Identities=32%  Similarity=0.401  Sum_probs=148.6

Q ss_pred             CceEEEEEecCCCChh-hHHHHHcCCCEEEeeCCCC---CCHHHHHHHHHHhccccCCCCceee-eccccccCCCCcC--
Q psy13615         39 RAEIVLVVSNKHNVEG-LNIARNAGIPTKVSTYKHT---LILSNSLQVMQKVGAKYSDIAPFSQ-DGGETAELPGLYQ--  111 (263)
Q Consensus        39 ~~~iv~Visn~~~a~g-l~~A~~~gIP~~~v~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~-~gge~~~l~~~~~--  111 (263)
                      ..+++.|-...|...| .+.-++.|||+|-.+..+-   .+++|.+++++..+... ..+..-. .....+.+...-.  
T Consensus        63 ~idl~vVGPE~pL~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPt-a~y~~f~~~e~a~ayi~~~g~pi  141 (428)
T COG0151          63 NVDLVVVGPEAPLVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPT-AEYEVFTDPEEAKAYIDEKGAPI  141 (428)
T ss_pred             CCCEEEECCcHHHhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCc-ccccccCCHHHHHHHHHHcCCCE
Confidence            4688888888776655 7788999999998865431   45588888887665443 2221111 1111111222211  


Q ss_pred             -CCcEEEeeeeeEEeec----------CCcCCccccc-cC-CcEEEEecCCCCCccccceeEEEecCcceeecCCccccc
Q psy13615        112 -PGDYDLAGFAVGAVEK----------ASLLPKVKDV-AA-GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHK  178 (263)
Q Consensus       112 -~d~i~LAG~m~~~~~~----------~~~in~hpsl-~~-g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhk  178 (263)
                       +.-.-||+ .+|+.-.          ..++.. ..+ .. ..|||+....   +.++|++ +++||..+.+||++||||
T Consensus       142 VVKadGLaa-GKGV~V~~~~eeA~~a~~~~l~~-~~fg~~g~~VVIEEfL~---GeE~S~~-a~~DG~~v~p~p~aQDhK  215 (428)
T COG0151         142 VVKADGLAA-GKGVIVAMTLEEAEAAVDEMLEG-NAFGSAGARVVIEEFLD---GEEFSLQ-AFVDGKTVIPMPTAQDHK  215 (428)
T ss_pred             EEecccccC-CCCeEEcCCHHHHHHHHHHHHhh-ccccCCCCcEEEEeccc---ceEEEEE-EEEcCCeEEECccccccc
Confidence             11112443 3443210          112211 111 12 2355655554   4569986 999999999999999999


Q ss_pred             cccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCC
Q psy13615        179 RKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNP  258 (263)
Q Consensus       179 r~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~  258 (263)
                      |+|++|.||||||||+|||.|+++++..+++.++|+.||+++|++||.+|+|+||+|||++..+|||        +|||+
T Consensus       216 ra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkV--------iEfN~  287 (428)
T COG0151         216 RAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKV--------IEFNA  287 (428)
T ss_pred             cccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEE--------EEEec
Confidence            9999999999999999999999999999999999999999999999999999999999988888766        59999


Q ss_pred             CCCCC
Q psy13615        259 EEGDP  263 (263)
Q Consensus       259 ~~gdp  263 (263)
                      |||||
T Consensus       288 RFGDP  292 (428)
T COG0151         288 RFGDP  292 (428)
T ss_pred             ccCCh
Confidence            99999

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=99.97  E-value=5.4e-32  Score=246.71  Aligned_cols=181  Identities=16%  Similarity=0.156  Sum_probs=148.7

Q ss_pred             eeeeecc-CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHH
Q psy13615          2 VVKTRMV-QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSL   80 (263)
Q Consensus         2 ~~~~~m~-~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~   80 (263)
                      .++.|.. .++||+||+||+||||++|+++  ++.+.++++|++|+||++++.  ++|+++|||+++++++...+.+++.
T Consensus        84 ~~~i~~~~~~~kiavl~Sg~g~nl~al~~~--~~~~~l~~~i~~visn~~~~~--~~A~~~gIp~~~~~~~~~~~~~~~~  159 (289)
T PRK13010         84 QWAIHPDGQRPKVVIMVSKFDHCLNDLLYR--WRMGELDMDIVGIISNHPDLQ--PLAVQHDIPFHHLPVTPDTKAQQEA  159 (289)
T ss_pred             eEEEecCCCCeEEEEEEeCCCccHHHHHHH--HHCCCCCcEEEEEEECChhHH--HHHHHcCCCEEEeCCCcccccchHH
Confidence            3455555 4679999999999999999966  567788999999999999884  8999999999999887633336677


Q ss_pred             HHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCc
Q psy13615         81 QVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHS  153 (263)
Q Consensus        81 ~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~  153 (263)
                      ++++.+  ++                   +++|+++|||||+.+    ++  +.++||+|||+        ||+ .|.+.
T Consensus       160 ~~~~~l--~~-------------------~~~Dlivlagym~il~~~~l~~~~~~iiNiHpSl--------LP~f~G~~~  210 (289)
T PRK13010        160 QILDLI--ET-------------------SGAELVVLARYMQVLSDDLSRKLSGRAINIHHSF--------LPGFKGARP  210 (289)
T ss_pred             HHHHHH--HH-------------------hCCCEEEEehhhhhCCHHHHhhccCCceeeCccc--------CCCCCCCCH
Confidence            778877  77                   999999999999943    22  46899999999        998 56554


Q ss_pred             cccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        154 NGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       154 ~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                      ..    |++.  +|++.+|+| .|    ++++++|+|++++|.++|+.++|+.++++++       +|+++++++.++..
T Consensus       211 ~~----~ai~--~G~k~tG~T-vH----~v~~~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l~~ai~~~~~~~~  279 (289)
T PRK13010        211 YH----QAHA--RGVKLIGAT-AH----FVTDDLDEGPIIEQDVERVDHSYSPEDLVAKGRDVECLTLARAVKAFIEHRV  279 (289)
T ss_pred             HH----HHHH--cCCCeEEEE-EE----EEcCCCCCCCceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence            43    3444  457779999 48    9999999999999999999999998887765       69999999986654

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=99.97  E-value=1.1e-31  Score=243.77  Aligned_cols=173  Identities=21%  Similarity=0.255  Sum_probs=145.0

Q ss_pred             CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhccc
Q psy13615         10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAK   89 (263)
Q Consensus        10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~   89 (263)
                      ++||+||+||+||||++|+++  ++.+.++++|++|+||+++|++  +|+++|||+++++.+..++.+++.++++.+  +
T Consensus        84 ~~ki~vl~Sg~g~nl~~l~~~--~~~g~l~~~i~~visn~~~~~~--~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l--~  157 (280)
T TIGR00655        84 LKRVAILVSKEDHCLGDLLWR--WYSGELDAEIALVISNHEDLRS--LVERFGIPFHYIPATKDNRVEHEKRQLELL--K  157 (280)
T ss_pred             CcEEEEEEcCCChhHHHHHHH--HHcCCCCcEEEEEEEcChhHHH--HHHHhCCCEEEcCCCCcchhhhHHHHHHHH--H
Confidence            579999999999999999976  6778889999999999999987  499999999999876533346777888877  6


Q ss_pred             cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615         90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF  162 (263)
Q Consensus        90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai  162 (263)
                      +                   +++|+++|||||+.+    ++  +.+++|+|||+        ||+ .|.+....    ++
T Consensus       158 ~-------------------~~~Dlivlagym~il~~~~l~~~~~~iINiHpSL--------LP~f~G~~p~~~----ai  206 (280)
T TIGR00655       158 Q-------------------YQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSF--------LPAFIGANPYQR----AY  206 (280)
T ss_pred             H-------------------hCCCEEEEeCchhhCCHHHHhhccCCEEEecCCc--------CCCCCCcCHHHH----HH
Confidence            7                   999999999999843    22  46899999999        998 66665433    33


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                      .  +|++.+|+| .|    ++|++.|+|+++.|.++|+.++|+.+++.+|       +|+++++.+.++..
T Consensus       207 ~--~G~k~tG~T-vH----~V~e~lD~GpII~Q~~v~I~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~~~~  270 (280)
T TIGR00655       207 E--RGVKIIGAT-AH----YVTEELDEGPIIEQDVVRVDHTDNVEDLIRAGRDIEKVVLARAVKLHLEDRV  270 (280)
T ss_pred             H--cCCCeEEEE-EE----EEcCCCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence            3  457779999 58    9999999999999999999999999987765       58999999976543

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PLN02331 phosphoribosylglycinamide formyltransferase

Probab=99.97  E-value=8.1e-32  Score=234.79  Aligned_cols=180  Identities=22%  Similarity=0.278  Sum_probs=146.2

Q ss_pred             cEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcccc
Q psy13615         12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAKY   90 (263)
Q Consensus        12 riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~~   90 (263)
                      ||+||+||+||||++|+++  ++.+.+++++++||||+++|+++++|+++|||++.+++.++..+ .+.+++++.+  ++
T Consensus         1 ki~vl~Sg~Gsn~~al~~~--~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l--~~   76 (207)
T PLN02331          1 KLAVFVSGGGSNFRAIHDA--CLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDAL--RG   76 (207)
T ss_pred             CEEEEEeCCChhHHHHHHH--HHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHH--Hh
Confidence            6999999999999999976  56678899999999999999999999999999999988765333 4556677777  67


Q ss_pred             CCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEEe
Q psy13615         91 SDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCFT  163 (263)
Q Consensus        91 ~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai~  163 (263)
                                         +++|++++||||+.+    ++  +.+++|+|||+        ||. .|...++..+++++.
T Consensus        77 -------------------~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSL--------LP~yrG~g~~~~~v~~a~i  129 (207)
T PLN02331         77 -------------------AGVDFVLLAGYLKLIPVELVRAYPRSILNIHPAL--------LPAFGGKGYYGIKVHKAVI  129 (207)
T ss_pred             -------------------cCCCEEEEeCcchhCCHHHHhhCCCCEEEEeCcc--------ccCCCCCCcccchHHHHHH
Confidence                               899999999999843    22  35789999999        998 454444444555545


Q ss_pred             cCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCCCe
Q psy13615        164 DGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGTPF  228 (263)
Q Consensus       164 dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~~~  228 (263)
                      . ++.+.+|+| .|    ++|++.|||++++|.++|+.++|+.+++.+|       +|+++++.+.+..+.+
T Consensus       130 ~-~g~~~tG~T-vh----~v~~~~D~G~Ii~Q~~~~I~~~dt~~~L~~r~~~~e~~ll~~al~~l~~~~~~~  195 (207)
T PLN02331        130 A-SGARYSGPT-VH----FVDEHYDTGRILAQRVVPVLATDTPEELAARVLHEEHQLYVEVVAALCEERIVW  195 (207)
T ss_pred             H-cCCCeEEEE-EE----EECCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEe
Confidence            3 456679999 47    9999999999999999999999999988765       5888888886554433

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=99.97  E-value=2.2e-31  Score=242.66  Aligned_cols=173  Identities=20%  Similarity=0.279  Sum_probs=144.3

Q ss_pred             CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhccc
Q psy13615         10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAK   89 (263)
Q Consensus        10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~   89 (263)
                      ++||+||+||+||||++|+++  ++.+.++++|++|+||+++++++  |+++|||++.++++...+.++..++.+.+  +
T Consensus        89 ~~ri~vl~Sg~gsnl~al~~~--~~~~~~~~~i~~visn~~~~~~l--A~~~gIp~~~~~~~~~~~~~~~~~~~~~l--~  162 (286)
T PRK06027         89 RKRVVILVSKEDHCLGDLLWR--WRSGELPVEIAAVISNHDDLRSL--VERFGIPFHHVPVTKETKAEAEARLLELI--D  162 (286)
T ss_pred             CcEEEEEEcCCCCCHHHHHHH--HHcCCCCcEEEEEEEcChhHHHH--HHHhCCCEEEeccCccccchhHHHHHHHH--H
Confidence            679999999999999999976  56678899999999999999887  99999999999877543446777777877  6


Q ss_pred             cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615         90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF  162 (263)
Q Consensus        90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai  162 (263)
                      +                   +++|+++|||||+.+    ++  +.+++|+|||+        ||+ .|.+...    |++
T Consensus       163 ~-------------------~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSL--------LP~yrG~~~~~----~ai  211 (286)
T PRK06027        163 E-------------------YQPDLVVLARYMQILSPDFVARFPGRIINIHHSF--------LPAFKGAKPYH----QAY  211 (286)
T ss_pred             H-------------------hCCCEEEEecchhhcCHHHHhhccCCceecCccc--------CCCCCCCCHHH----HHH
Confidence            7                   899999999999943    22  46899999999        998 6655443    344


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                      .  +|++.+|+| .|    ++|+++|||+|++|.++|+.++|+.+++.+|       +|+++++.+.++..
T Consensus       212 ~--~G~~~tG~T-iH----~v~~~~D~G~Ii~Q~~v~i~~~dt~~~L~~ri~~~E~~~~~~ai~~~~~~~~  275 (286)
T PRK06027        212 E--RGVKLIGAT-AH----YVTADLDEGPIIEQDVIRVDHRDTAEDLVRAGRDVEKQVLARAVRWHLEDRV  275 (286)
T ss_pred             H--CCCCeEEEE-EE----EEcCCCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence            4  457779999 58    9999999999999999999999999887765       58999999976543

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=99.97  E-value=1.3e-30  Score=237.49  Aligned_cols=180  Identities=19%  Similarity=0.169  Sum_probs=146.6

Q ss_pred             eeeecc-CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615          3 VKTRMV-QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQ   81 (263)
Q Consensus         3 ~~~~m~-~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~   81 (263)
                      +..+.. .++||+||+||+||||++|+++  ++.+.++++|++|+||+++++++  |+++|||++++++....+.+++.+
T Consensus        81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~--~~~~~~~~~i~~visn~~~~~~l--A~~~gIp~~~~~~~~~~~~~~~~~  156 (286)
T PRK13011         81 WELHDPAARPKVLIMVSKFDHCLNDLLYR--WRIGELPMDIVGVVSNHPDLEPL--AAWHGIPFHHFPITPDTKPQQEAQ  156 (286)
T ss_pred             EEEeecccCceEEEEEcCCcccHHHHHHH--HHcCCCCcEEEEEEECCccHHHH--HHHhCCCEEEeCCCcCchhhhHHH
Confidence            444544 4679999999999999999976  56678889999999999999887  999999999998755222356677


Q ss_pred             HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCcc
Q psy13615         82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSN  154 (263)
Q Consensus        82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~  154 (263)
                      +++.+  +.                   +++|+++|||||+.+    ++  +.+++|+||||        ||+ .|.+..
T Consensus       157 ~~~~l--~~-------------------~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSL--------LP~~rG~~~~  207 (286)
T PRK13011        157 VLDVV--EE-------------------SGAELVVLARYMQVLSPELCRKLAGRAINIHHSF--------LPGFKGAKPY  207 (286)
T ss_pred             HHHHH--HH-------------------hCcCEEEEeChhhhCCHHHHhhccCCeEEecccc--------CCCCCCCcHH
Confidence            77777  67                   899999999999943    22  46899999999        998 665554


Q ss_pred             ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                      .    |++.  +|++.+|+| .|    ++|+++|+|++++|.++|+.++|+.+++++|       +|+++++.+.+...
T Consensus       208 ~----~ai~--~G~~~tG~T-vH----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~E~~~~~~ai~~~~~~~~  275 (286)
T PRK13011        208 H----QAYE--RGVKLIGAT-AH----YVTDDLDEGPIIEQDVERVDHAYSPEDLVAKGRDVECLTLARAVKAHIERRV  275 (286)
T ss_pred             H----HHHH--CCCCeEEEE-EE----EEcCCCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence            3    3444  457779999 47    9999999999999999999999999987775       58999999976543

>KOG0237|consensus

Probab=99.96  E-value=5.9e-30  Score=245.06  Aligned_cols=114  Identities=37%  Similarity=0.601  Sum_probs=101.8

Q ss_pred             CCcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHH
Q psy13615        139 AGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI  218 (263)
Q Consensus       139 ~g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i  218 (263)
                      +|..||..+.  +++.+.|+. +++||.++..||++|||||++++|.||||||||+|+|.|+.++++++.+.+.|++||+
T Consensus       185 AG~tvViEE~--LEGeEvS~l-aftDG~s~~~mp~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv  261 (788)
T KOG0237|consen  185 AGKTVVIEEL--LEGEEVSFL-AFTDGYSVRPLPPAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTV  261 (788)
T ss_pred             ccceEehhhh--cCcceEEEE-EEecCcccccCCcccchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHhh
Confidence            5666654333  345668875 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        219 KKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       219 ~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      ++|++||+||.|+||+|||.+..+|        ||+|||||||||
T Consensus       262 ~Gm~~eg~~y~GVLfaGlMl~k~~P--------~vLEfN~RFGDP  298 (788)
T KOG0237|consen  262 DGMAEEGIPYVGVLFAGLMLTKDGP--------KVLEFNVRFGDP  298 (788)
T ss_pred             hHHHhcCCceeeEEeeeeEEecCCc--------cEEEEecccCCc
Confidence            9999999999999999999665555        677999999999

>PLN02828 formyltetrahydrofolate deformylase

Probab=99.96  E-value=2.3e-29  Score=226.60  Aligned_cols=171  Identities=18%  Similarity=0.183  Sum_probs=138.8

Q ss_pred             CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecC---CCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHH
Q psy13615          9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNK---HNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQK   85 (263)
Q Consensus         9 ~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~---~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~   85 (263)
                      .++||+||+||+||||++|+++  ++.++++++|++|+||+   ++++++++|+++|||+++++.+.+.+++  +++++.
T Consensus        69 ~~~riavlvSg~g~nl~~ll~~--~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e--~~~~~~  144 (268)
T PLN02828         69 PKYKIAVLASKQDHCLIDLLHR--WQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKRE--DEILEL  144 (268)
T ss_pred             CCcEEEEEEcCCChhHHHHHHh--hhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHH--HHHHHH
Confidence            4679999999999999999965  67788999999999998   5679999999999999999887655542  345554


Q ss_pred             hccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccce
Q psy13615         86 VGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSL  158 (263)
Q Consensus        86 l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl  158 (263)
                      +                       -++|+++|||||+.+    ++  +.++||+|||+        ||+ .|.+.+.   
T Consensus       145 l-----------------------~~~DliVLAgym~IL~~~~l~~~~~riINIHpSl--------LP~f~Ga~p~~---  190 (268)
T PLN02828        145 V-----------------------KGTDFLVLARYMQILSGNFLKGYGKDIINIHHGL--------LPSFKGGNPSK---  190 (268)
T ss_pred             H-----------------------hcCCEEEEeeehHhCCHHHHhhccCCEEEecCcc--------CCCCCCCcHHH---
Confidence            4                       248999999999943    22  46899999999        998 5655443   


Q ss_pred             eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615        159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG  225 (263)
Q Consensus       159 ~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg  225 (263)
                       +++.  .|++.+|+| .|    ++++++|+|+|+.|..+|+.++|+.+++.++       +|+++++.+.+..
T Consensus       191 -~Ai~--~Gvk~tG~T-vH----~V~~~lD~GpII~Q~~v~V~~~dt~~~L~~r~~~~E~~~l~~av~~~~~~~  256 (268)
T PLN02828        191 -QAFD--AGVKLIGAT-SH----FVTEELDAGPIIEQMVERVSHRDNLRSFVQKSENLEKQCLAKAIKSYCELR  256 (268)
T ss_pred             -HHHH--cCCCeEEEE-EE----EEcCCCCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             3433  467889999 47    9999999999999999999988888877654       6889999886543

>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent

Probab=99.95  E-value=5.8e-28  Score=208.19  Aligned_cols=171  Identities=29%  Similarity=0.378  Sum_probs=140.1

Q ss_pred             ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615         11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK   89 (263)
Q Consensus        11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~   89 (263)
                      +||+||+||+|||+++++++  +.++.+.++|++|++|+++|+++++|+++|||++.+++..+.++ ++..++.+.+  +
T Consensus         1 ~riail~sg~gs~~~~ll~~--~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l--~   76 (190)
T TIGR00639         1 KRIVVLISGNGSNLQAIIDA--CKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEEL--R   76 (190)
T ss_pred             CeEEEEEcCCChhHHHHHHH--HHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHH--H
Confidence            58999999999999999976  45566778999999999999999999999999999887776544 5667777777  6


Q ss_pred             cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615         90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF  162 (263)
Q Consensus        90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai  162 (263)
                      +                   +++|+++++|||+.+    ++  +.+++|+|||+        ||. .|.+..    +|++
T Consensus        77 ~-------------------~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHpsl--------LP~yrG~~p~----~~ai  125 (190)
T TIGR00639        77 A-------------------HEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSL--------LPAFPGLHAV----EQAL  125 (190)
T ss_pred             h-------------------cCCCEEEEeCcchhCCHHHHhhccCCEEEEeCCc--------ccCCCCccHH----HHHH
Confidence            6                   899999999999843    22  35689999999        998 453322    4566


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA  223 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~  223 (263)
                      .+|  .+.+|+| .|    +.|+|.|||+|++|.++|+.++|+.+++.++       ++.++++.+.+
T Consensus       126 ~~g--~~~tGvT-ih----~v~~~~D~G~Ii~q~~~~i~~~dt~~~L~~k~~~~~~~l~~~~l~~~~~  186 (190)
T TIGR00639       126 EAG--VKESGCT-VH----YVDEEVDTGPIIAQAKVPILPEDTEETLEQRIHKQEHRIYPLAIAWFAQ  186 (190)
T ss_pred             HcC--CCeEEEE-EE----EEcCCCcCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            665  5569999 47    9999999999999999999999999888765       47777777754

In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.

>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed

Probab=99.94  E-value=4.2e-27  Score=204.39  Aligned_cols=177  Identities=29%  Similarity=0.393  Sum_probs=143.0

Q ss_pred             CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcc
Q psy13615         10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGA   88 (263)
Q Consensus        10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~   88 (263)
                      |+||+||+||+|||+++++++  ...+.+.++|++|+||+++|.+.++|+++|||++.+++.++.++ ++..++.+.+  
T Consensus         1 m~ki~vl~sg~gs~~~~ll~~--~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l--   76 (200)
T PRK05647          1 MKRIVVLASGNGSNLQAIIDA--CAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEAL--   76 (200)
T ss_pred             CceEEEEEcCCChhHHHHHHH--HHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHH--
Confidence            368999999999999999976  34456678999999999999999999999999999887766443 5666777767  


Q ss_pred             ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615         89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC  161 (263)
Q Consensus        89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a  161 (263)
                      +.                   +++|+++++||+..+    ++  +..++|+|||+        ||. .|.+..    +|+
T Consensus        77 ~~-------------------~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHpsl--------LP~yrG~~p~----~~a  125 (200)
T PRK05647         77 DA-------------------YQPDLVVLAGFMRILGPTFVSAYEGRIINIHPSL--------LPSFPGLHTH----EQA  125 (200)
T ss_pred             HH-------------------hCcCEEEhHHhhhhCCHHHHhhccCCEEEEeCcc--------ccCCCCccHH----HHH
Confidence            66                   899999999999732    22  34689999999        998 443322    456


Q ss_pred             EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCCCe
Q psy13615        162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGTPF  228 (263)
Q Consensus       162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~~~  228 (263)
                      +.+|  ...+|+| .|    +.|++.|||++..|..+|+.++|+.+++.++       +++++++.+.+....+
T Consensus       126 i~~g--~~~tG~T-vh----~~~~~~D~G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~~~  192 (200)
T PRK05647        126 LEAG--VKVHGCT-VH----FVDEGLDTGPIIAQAAVPVLAGDTEESLAARVLEQEHRLYPLVVKWFAEGRLKL  192 (200)
T ss_pred             HHcC--CCeEEEE-EE----EEcCCCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEe
Confidence            6665  4558999 47    9999999999999999999999999887765       5788888887665544

>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]

Probab=99.92  E-value=7.3e-26  Score=206.82  Aligned_cols=139  Identities=44%  Similarity=0.667  Sum_probs=128.5

Q ss_pred             EEEEcCc---chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH--HHHHHHHHHh--
Q psy13615         14 AVLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL--SNSLQVMQKV--   86 (263)
Q Consensus        14 avl~SG~---Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~--~~~~~i~~~l--   86 (263)
                      .+|+|++   ||++....+.  .+++.+++|++++++|+.-|.|.+       |.+++||.+.++.  +..+++++++  
T Consensus        55 p~Lv~~tDGVGTKl~~A~~~--~k~dTiGID~VAM~VNDlv~~GAe-------Pl~flDY~A~gk~~~~~~~~iv~Giae  125 (345)
T COG0150          55 PVLVSGTDGVGTKLLLAEDA--GKHDTIGIDLVAMCVNDLVVQGAE-------PLFFLDYLATGKLDPEVAAQIVKGIAE  125 (345)
T ss_pred             ceEEecCCCchHHHHHHHHh--CCccccccchheeecchhhhcCcc-------hHHHHhhhhcCCCCHHHHHHHHHHHHH
Confidence            7888888   9999988744  677889999999999999999999       9999999998775  8889999999  


Q ss_pred             ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccceeEEEecC
Q psy13615         87 GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFTDG  165 (263)
Q Consensus        87 ~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~~ai~dg  165 (263)
                      +|++   ++|+|+|||||+||++|..+.++||||+.++++++++|+. ..+++||+||+|||+|+|+||||+.|+++.-
T Consensus       126 Gc~~---ag~aLvGGETAeMPg~y~~g~yDlaG~~vGvvek~~ii~g-~~i~~GDviigl~SSG~HSNGySLvRKi~~~  200 (345)
T COG0150         126 GCKQ---AGCALVGGETAEMPGMYRGGDYDLAGFAVGVVEKDEIIDG-SKVKEGDVIIGLASSGLHSNGYSLVRKIIEE  200 (345)
T ss_pred             HHHH---hCCEEeccccccCCCcccCCceeeeeeEEEEEEccccccc-cccCCCCEEEEecCCCcCCCchHHHHHHHHh
Confidence            9999   9999999999999999999999999999999999999998 7899999999999999999999998887753

>KOG0237|consensus

Probab=99.89  E-value=5.4e-24  Score=204.31  Aligned_cols=182  Identities=40%  Similarity=0.579  Sum_probs=151.7

Q ss_pred             CccEEEEEcCc---chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH--HHHHHHHH
Q psy13615         10 RKRVAVLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL--SNSLQVMQ   84 (263)
Q Consensus        10 ~~riavl~SG~---Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~--~~~~~i~~   84 (263)
                      ..|-..|+||+   ||++....  .++..+.++.|++++..|+.-+.|.+       |.+++||.++++.  +..+++++
T Consensus       485 g~~d~~Lv~~tdGVGtKl~iA~--~~~~hdtvG~DlvAm~vNDii~~gAe-------Pl~FLDYfa~gkLd~~va~~~v~  555 (788)
T KOG0237|consen  485 GFKDPLLVSGTDGVGTKLKIAQ--ETNIHDTVGIDLVAMNVNDIIVQGAE-------PLFFLDYFATGKLDVSVAEQVVK  555 (788)
T ss_pred             CCCCceEEEeccCccceeehhh--hhCcccccceeeeeeehhhHhhcCCc-------ceeehhhhhhcccchHHHHHHHH
Confidence            44566788887   99999776  45677889999999999999999999       9999999999886  77888888


Q ss_pred             Hh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccceeEEE
Q psy13615         85 KV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCF  162 (263)
Q Consensus        85 ~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~~ai  162 (263)
                      ++  +|++   ++|+|+||||||||++|.+..|+||||..+++++..+++...++.+||++++|||+|+|+||||+.|++
T Consensus       556 gia~gC~q---a~CaLvGGETaEMP~~Y~~g~yDlaG~Avga~e~~~iLp~~~ei~~GDVllGL~SsGvHSNGfSLvrki  632 (788)
T KOG0237|consen  556 GIAEGCRQ---AGCALVGGETAEMPGMYAPGEYDLAGFAVGAVERTDILPKLNEIVAGDVLLGLPSSGVHSNGFSLVRKI  632 (788)
T ss_pred             HHHHHHhh---ccceeeccccccCCCCCCCCccccccceEeeeeccCcCCCccccccCcEEEeccccccccCcHHHHHHH
Confidence            88  9999   999999999999999999999999999999999888988867799999999999999999999999999


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHH
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHD  211 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~  211 (263)
                      +..+++.+.-++.       -|.+- |=|-....|..+|...++.-|++
T Consensus       633 l~~~~l~~~~~~P-------~~~~~-tlGd~LL~pTkiYvk~ll~~i~~  673 (788)
T KOG0237|consen  633 LARSGLSYKDPLP-------WDSSK-TLGDELLAPTKIYVKQLLPLIRK  673 (788)
T ss_pred             HHhcCCccCCCCC-------CCccc-chhhhhccccEEehhhhHHHHHh
Confidence            8877776665553       11111 44444566777776666665553

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=99.87  E-value=2.4e-22  Score=177.97  Aligned_cols=172  Identities=20%  Similarity=0.228  Sum_probs=140.3

Q ss_pred             CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhccc
Q psy13615         10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAK   89 (263)
Q Consensus        10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~   89 (263)
                      ++||++|+|..++||..|+  .+|+.|+++++|++||||+++...+  |+++|||+++++.....+.+.++++++.+  .
T Consensus        90 ~~ri~i~VSK~~HCL~DLL--~r~~~g~L~~eI~~VIsNH~dl~~~--v~~~~IPfhhip~~~~~k~e~E~~~~~ll--~  163 (287)
T COG0788          90 RKRIAILVSKEDHCLGDLL--YRWRIGELPAEIVAVISNHDDLRPL--VERFDIPFHHIPVTKENKAEAEARLLELL--E  163 (287)
T ss_pred             CceEEEEEechHHHHHHHH--HHHhcCCcCCceEEEEcCCHHHHHH--HHHcCCCeeeccCCCCcchHHHHHHHHHH--H
Confidence            7799999999999999999  6678899999999999999988754  89999999999876655668888888888  6


Q ss_pred             cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEe----e--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615         90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAV----E--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF  162 (263)
Q Consensus        90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~----~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai  162 (263)
                      +                   |++|+++||-||+.+.    +  .+++||||+|+        ||+ .|..     +++++
T Consensus       164 ~-------------------~~~DlvVLARYMqILS~d~~~~~~g~iINIHHSF--------LPaF~GA~-----PY~QA  211 (287)
T COG0788         164 E-------------------YGADLVVLARYMQILSPDFVERFPGKIINIHHSF--------LPAFIGAN-----PYHQA  211 (287)
T ss_pred             H-------------------hCCCEEeehhhHhhCCHHHHHhccCcEEEecccc--------cccCCCCC-----hHHHH
Confidence            7                   9999999999999432    2  47999999999        998 6644     32233


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHH-------HHHHHHHHHHHHHHhcC
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKE-------IHDTILMRVIKKMIAEG  225 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~-------i~~~il~~~i~~~~~eg  225 (263)
                      .. .|+++.|.|. |    ++...+|.|||+.|.-+++-..++.+.       ++..+|.+++++-.+..
T Consensus       212 ~e-RGVKlIGATA-H----YVT~dLDeGPIIeQdv~rV~H~~s~ed~~~~GrDvE~~VLARAv~~hle~R  275 (287)
T COG0788         212 YE-RGVKLIGATA-H----YVTADLDEGPIIEQDVIRVDHAYSVEDLVRAGRDVEKLVLARAVKAHLEDR  275 (287)
T ss_pred             Hh-cCCeEeeeee-e----eccCCCCCCCceeeeeeecCccCCHHHHHHhCCcHHHHHHHHHHHHHhcce
Confidence            43 7799999995 7    999999999999998877744444443       55567888888876544

>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group

Probab=99.86  E-value=2.6e-22  Score=171.44  Aligned_cols=170  Identities=23%  Similarity=0.281  Sum_probs=132.4

Q ss_pred             ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615         11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK   89 (263)
Q Consensus        11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~   89 (263)
                      +||+||+||+||+++.++++.  +.....+++++|+||++...+..+|.+.++|...++...+... ....++.+.+  +
T Consensus         1 mrI~~~~Sg~~~~~~~~l~~l--~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~   76 (181)
T PF00551_consen    1 MRIVFFGSGSGSFLKALLEAL--KARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELL--E   76 (181)
T ss_dssp             EEEEEEESSSSHHHHHHHHHH--HTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHH--H
T ss_pred             CEEEEEEcCCCHHHHHHHHHH--HhCCCCceEEEEeccccccccccccccCCCCEEeccccCCCchHhhhhHHHHHH--H
Confidence            589999999999999999764  3344447899999999999999999999999999998887665 6777778877  6


Q ss_pred             cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccccce-eEEE
Q psy13615         90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNGFSL-VLCF  162 (263)
Q Consensus        90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl-~~ai  162 (263)
                      +                   +++|+++++||++.+    ++  +..++|+|||+        ||.    ++|.++ .|++
T Consensus        77 ~-------------------~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHpsl--------LP~----yrG~~p~~~ai  125 (181)
T PF00551_consen   77 S-------------------LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPSL--------LPK----YRGASPIQWAI  125 (181)
T ss_dssp             H-------------------TT-SEEEESS-SS---HHHHHHSTTSEEEEESSS--------TTT----TBSSTHHHHHH
T ss_pred             h-------------------hccceeehhhhHHHhhhhhhhcccccEEEEeecC--------Ccc----CCCcchhhhhh
Confidence            7                   899999999999843    23  34679999999        998    344555 5567


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHH
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMI  222 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~  222 (263)
                      .+|  ...+|+| .|    +.+++.|+|++..|..+|+.++|+.+++.+|+.....+.|.
T Consensus       126 ~~g--~~~~G~T-vh----~~~~~~D~G~Ii~q~~~~i~~~dt~~~l~~r~~~~~~~~l~  178 (181)
T PF00551_consen  126 LNG--EKETGVT-VH----FMDEGLDAGPIIAQKKFPIEPDDTAESLYERLAEAEAELLV  178 (181)
T ss_dssp             HHT--SSEEEEE-EE----EE-SSTTTSEEEEEEEEE--TT--HHHHHHHHHHHHHHHHH
T ss_pred             cCC--cceeeeE-EE----EecccCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            766  4558999 47    89999999999999999999999999999988766555543

Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....

>PRK13789 phosphoribosylamine--glycine ligase; Provisional

Probab=99.83  E-value=2.5e-20  Score=178.61  Aligned_cols=207  Identities=28%  Similarity=0.417  Sum_probs=136.1

Q ss_pred             ceEEEEEecCCCChh-hHHHHHcCCCEEEeeCCC---CCCHHHHHHHHHHhccccCCCCceeeecc-ccc-------cCC
Q psy13615         40 AEIVLVVSNKHNVEG-LNIARNAGIPTKVSTYKH---TLILSNSLQVMQKVGAKYSDIAPFSQDGG-ETA-------ELP  107 (263)
Q Consensus        40 ~~iv~Visn~~~a~g-l~~A~~~gIP~~~v~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~gg-e~~-------~l~  107 (263)
                      .|.+.+-..++...+ .+.++++|||++-.+...   ..++.+.+++++..++..   +.....-. +.+       .+|
T Consensus        69 iD~Vv~g~E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt---~~~~~~~~~~ea~~~~~~~~~P  145 (426)
T PRK13789         69 FDLIVVGPEDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPT---ASYKTFTEYSSSLSYLESEMLP  145 (426)
T ss_pred             CCEEEECCchHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCC---CCeEeeCCHHHHHHHHHhcCCC
Confidence            455554444544444 366788888876554332   134567777777664444   22222111 000       123


Q ss_pred             CCcCCCcEEEeeeeeE--Eee-cCCc---CCc---cccc-cCC-cEEEEecCCCCCccccceeEEEecCcceeecCCccc
Q psy13615        108 GLYQPGDYDLAGFAVG--AVE-KASL---LPK---VKDV-AAG-DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQD  176 (263)
Q Consensus       108 ~~~~~d~i~LAG~m~~--~~~-~~~~---in~---hpsl-~~g-~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~d  176 (263)
                      =+..|+.  ++| .+|  ++. ...+   ++.   .... .++ +++|+-.-.|   .++|+. ++.+|..+.++|+++|
T Consensus       146 vVVKp~~--~~~-gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G---~E~Sv~-~~~dg~~~~~lp~~~d  218 (426)
T PRK13789        146 IVIKADG--LAA-GKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG---QEASIF-AISDGDSYFLLPAAQD  218 (426)
T ss_pred             EEEEeCC--CCC-CCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC---eEEEEE-EEECCCEEEEccceEe
Confidence            3344442  232 132  222 1111   110   0101 012 4555544455   468875 7889888889999999


Q ss_pred             cccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeee
Q psy13615        177 HKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKED  256 (263)
Q Consensus       177 hkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~  256 (263)
                      |||.++.|.|||||||++++|.|.++++..+++.++|+.+++++|+++|++|+|++|++||.+..+       .+.|+||
T Consensus       219 ~k~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g-------~~~vlE~  291 (426)
T PRK13789        219 HKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEG-------EPKVVEF  291 (426)
T ss_pred             cccccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCC-------CEEEEEE
Confidence            999999999999999999999999999999999989999999999999999999999999955433       0567899


Q ss_pred             CCCCCCC
Q psy13615        257 NPEEGDP  263 (263)
Q Consensus       257 n~~~gdp  263 (263)
                      |+|||||
T Consensus       292 n~R~Gdp  298 (426)
T PRK13789        292 NCRFGDP  298 (426)
T ss_pred             ecCCCCc
Confidence            9999998

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=99.80  E-value=2.1e-19  Score=172.68  Aligned_cols=111  Identities=37%  Similarity=0.553  Sum_probs=97.3

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEEC----cccCCCHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYC----PCDILTEAQKKEIHDTILM  215 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~----pv~i~~~~~~~~i~~~il~  215 (263)
                      +.+||+-.-.|.   ++|+. +++||..+.+++++|||||++++|.||+|||||+++    |.|.++++..+++ .+++.
T Consensus       182 ~~viIEEfl~G~---E~Svd-~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i-~~i~~  256 (435)
T PRK06395        182 GVVLIEKKMTGE---EFSLQ-AFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERA-KHILN  256 (435)
T ss_pred             CcEEEEeecCCc---eEEEE-EEEcCCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHH-HHHHH
Confidence            456665555554   58875 889999999999999999999999999999999999    7888999999999 68999


Q ss_pred             HHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        216 RVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       216 ~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      +++++|..++.+|+|+||+++|.+..+        ++|+|||+|||||
T Consensus       257 ~~~~~l~~~~~~~~G~l~~~~~lt~~g--------p~ViE~n~R~gdp  296 (435)
T PRK06395        257 DIIRAMKDENNPFKGIMYGQFMDTPNG--------VKVIEINARFADP  296 (435)
T ss_pred             HHHHHHHhcCCceEEEEEEEEEEeCCC--------cEEEEEeCCCCCc
Confidence            999999999999999999999955555        4667999999998

>PLN02285 methionyl-tRNA formyltransferase

Probab=99.79  E-value=1.3e-19  Score=168.63  Aligned_cols=169  Identities=18%  Similarity=0.192  Sum_probs=128.0

Q ss_pred             CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCC----------hhhHHHHHcCCCEEEeeCCCCCCHH
Q psy13615         10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV----------EGLNIARNAGIPTKVSTYKHTLILS   77 (263)
Q Consensus        10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a----------~gl~~A~~~gIP~~~v~~~~~~~~~   77 (263)
                      ++||++|+|+.  -+||++|+++  .+.+..+++|++|+||.+.+          ++.++|+++|||++++......   
T Consensus         6 ~~kI~f~Gt~~fa~~~L~~L~~~--~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~---   80 (334)
T PLN02285          6 KKRLVFLGTPEVAATVLDALLDA--SQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKA---   80 (334)
T ss_pred             ccEEEEEECCHHHHHHHHHHHhh--hhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCcccc---
Confidence            46899999997  8999999965  34455568999999998766          4789999999997754222111   


Q ss_pred             HHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCC
Q psy13615         78 NSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGI  151 (263)
Q Consensus        78 ~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~  151 (263)
                      ...++++.+  ++                   +++|++++||||+.+    ++  +..++|+|||+        ||.   
T Consensus        81 ~~~~~~~~l--~~-------------------~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSL--------LP~---  128 (334)
T PLN02285         81 GEEDFLSAL--RE-------------------LQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSL--------LPL---  128 (334)
T ss_pred             CCHHHHHHH--Hh-------------------hCCCEEEhhHhhhhcCHHHHhhccCCEEEEeccc--------ccC---
Confidence            122334555  56                   789999999999842    32  35689999999        998   


Q ss_pred             Cccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615        152 HSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA  223 (263)
Q Consensus       152 ~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~  223 (263)
                       ++|.++ +|++.+|  ...+|+| .|    +.+++.|||+|.+|.++++.++|+.+++.++       ++.+++..+.+
T Consensus       129 -yRG~~pi~~ai~~G--~~~tGvT-ih----~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~  200 (334)
T PLN02285        129 -YRGAAPVQRALQDG--VNETGVS-VA----FTVRALDAGPVIAQERVEVDEDIKAPELLPLLFELGTKLLLRELPSVLD  200 (334)
T ss_pred             -CCCcCHHHHHHHcC--CCcEEEE-EE----EECCCccCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence             334444 4566766  4559999 47    8999999999999999999988888887765       46777777753

>PRK05784 phosphoribosylamine--glycine ligase; Provisional

Probab=99.77  E-value=1.4e-18  Score=168.93  Aligned_cols=111  Identities=28%  Similarity=0.449  Sum_probs=95.9

Q ss_pred             cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECc----ccCCCHHHHHHHHHHHHHH
Q psy13615        141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCP----CDILTEAQKKEIHDTILMR  216 (263)
Q Consensus       141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~p----v~i~~~~~~~~i~~~il~~  216 (263)
                      .++|+-...|.   ++|+. +++||..+.+++.+||||++++.|.||||||||+++|    +|.++++..+++. +++.+
T Consensus       198 ~VlIEEfL~G~---E~SV~-al~dG~~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~-~~v~~  272 (486)
T PRK05784        198 KILVEEKVDGV---EYTLQ-VLTDGETVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAV-EIVKR  272 (486)
T ss_pred             eEEEEEccCCe---EEEEE-EEECCCeEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHH-HHHHH
Confidence            45666555664   47875 8889988888999999999999999999999999999    9999999988886 89999


Q ss_pred             HHHHHHhc-CCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        217 VIKKMIAE-GTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       217 ~i~~~~~e-g~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      ++++|..+ |++|+|++|++||.+.       ..|++|+|||+|||||
T Consensus       273 ~l~al~~~~g~~~~G~l~~elmlt~-------~~GP~vIE~n~R~Gdp  313 (486)
T PRK05784        273 TIDAIYKETGERYVGVISGQMMLTE-------LWGPTVIEYYSRFGDP  313 (486)
T ss_pred             HHHHHHHhcCCCcEEEEEEEEEEec-------CCCcEEEEEecccCCc
Confidence            99999998 9999999999999540       4455677999999998

>PLN02257 phosphoribosylamine--glycine ligase

Probab=99.73  E-value=2.5e-17  Score=158.37  Aligned_cols=209  Identities=28%  Similarity=0.315  Sum_probs=135.8

Q ss_pred             ceEEEEEecCCCC-hhhHHHHHcCCCEEEeeCCC---CCCHHHHHHHHHHhccccCCCCceeeecc-ccc-------cCC
Q psy13615         40 AEIVLVVSNKHNV-EGLNIARNAGIPTKVSTYKH---TLILSNSLQVMQKVGAKYSDIAPFSQDGG-ETA-------ELP  107 (263)
Q Consensus        40 ~~iv~Visn~~~a-~gl~~A~~~gIP~~~v~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~gg-e~~-------~l~  107 (263)
                      .+.+.+-+..+.. ..++..+++|+|++..+...   ..++.+.+++++..++..   .....+-. +.+       ..|
T Consensus        63 id~vvvg~E~~lv~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIpt---p~~~~~~~~~e~~~~~~~~g~P  139 (434)
T PLN02257         63 VGLVVVGPEAPLVAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPT---AKYETFTDPAAAKKYIKEQGAP  139 (434)
T ss_pred             CCEEEECCchHHHHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCC---CCeEEeCCHHHHHHHHHHcCCC
Confidence            4555555555543 33567778899987765433   234567777777664443   22222211 000       023


Q ss_pred             CCcCCCcEEEeeeeeEEee-cCCcCCcccc------c-cCC-cEEEEecCCCCCccccceeEEEecCcceeecCCccccc
Q psy13615        108 GLYQPGDYDLAGFAVGAVE-KASLLPKVKD------V-AAG-DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHK  178 (263)
Q Consensus       108 ~~~~~d~i~LAG~m~~~~~-~~~~in~hps------l-~~g-~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhk  178 (263)
                      =+..++. .-+|....++. ...+......      + ..+ .++|+-.-.|.   ++|+. +++||..+.+++..||||
T Consensus       140 vVVKp~~-~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G~---E~Sv~-~~~dG~~~~pl~~~~dhk  214 (434)
T PLN02257        140 IVVKADG-LAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDGE---EASFF-ALVDGENAIPLESAQDHK  214 (434)
T ss_pred             EEEEcCC-CCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCC---EEEEE-EEECCCcEEEEEeeeecc
Confidence            3344431 11221111222 1111111001      0 112 34454444554   58875 788988888888889999


Q ss_pred             cccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccc-cCCceeeecCcceeeeeC
Q psy13615        179 RKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEG-TVTAKVFSSRNRREKEDN  257 (263)
Q Consensus       179 r~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~-~~~~~~~~~~~~~~~e~n  257 (263)
                      |+|+.|.|+|||||++++|.|.++++..+++.++++.+++++|..++.+|+|+||++||.+ ..+       ++.|+|||
T Consensus       215 r~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-------~p~vLE~N  287 (434)
T PLN02257        215 RVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-------LPKLLEYN  287 (434)
T ss_pred             cccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-------CEEEEEEE
Confidence            9999999999999999999999999999999899999999999999999999999999965 222       25678999


Q ss_pred             CCCCCC
Q psy13615        258 PEEGDP  263 (263)
Q Consensus       258 ~~~gdp  263 (263)
                      +|||||
T Consensus       288 ~R~Gdp  293 (434)
T PLN02257        288 VRFGDP  293 (434)
T ss_pred             CCCCCC
Confidence            999998

>PRK06988 putative formyltransferase; Provisional

Probab=99.63  E-value=6.5e-16  Score=142.70  Aligned_cols=159  Identities=19%  Similarity=0.225  Sum_probs=117.0

Q ss_pred             ccEEEEEcCc-c-hhHHHHHHHhccccCCCCceEEEEEecCCC-------ChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615         11 KRVAVLISGT-G-TNLKSLLEATSNRSDIMRAEIVLVVSNKHN-------VEGLNIARNAGIPTKVSTYKHTLILSNSLQ   81 (263)
Q Consensus        11 ~riavl~SG~-G-snl~al~~~~~~~~~~l~~~iv~Visn~~~-------a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~   81 (263)
                      +||++|+|+. | .+|+.|+++        +.+|++|+|+.+.       .+..++|+++|||++......  +    .+
T Consensus         3 mkIvf~Gs~~~a~~~L~~L~~~--------~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~--~----~~   68 (312)
T PRK06988          3 PRAVVFAYHNVGVRCLQVLLAR--------GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPN--D----PE   68 (312)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhC--------CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCC--C----HH
Confidence            5999999997 4 377777621        3689999997422       266899999999987643221  2    23


Q ss_pred             HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccc
Q psy13615         82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNG  155 (263)
Q Consensus        82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g  155 (263)
                      +++.+  ++                   .++|++++++|+..+    ++  +..++|+|||+        ||.    ++|
T Consensus        69 ~~~~l--~~-------------------~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpsl--------LP~----yRG  115 (312)
T PRK06988         69 LRAAV--AA-------------------AAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSL--------LPK----YRG  115 (312)
T ss_pred             HHHHH--Hh-------------------cCCCEEEEehhccccCHHHHhcCCCCEEEeeCcc--------ccC----CCC
Confidence            34555  56                   789999999998743    22  34579999999        998    444


Q ss_pred             cce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHH-------HHHHHHHHHh
Q psy13615        156 FSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTI-------LMRVIKKMIA  223 (263)
Q Consensus       156 ~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~i-------l~~~i~~~~~  223 (263)
                      .++ +|++.+|..  .+|+| .|    +.+++.|||+|.+|..+|+.++|+..++.+++       +.+++..+.+
T Consensus       116 ~~pi~~ai~~g~~--~tGvT-ih----~~~~~~D~G~Il~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~  184 (312)
T PRK06988        116 RVPVNWAVLNGET--ETGAT-LH----EMVAKPDAGAIVDQTAVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLA  184 (312)
T ss_pred             cCHHHHHHHcCCC--ceEEE-EE----EECCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            444 567777654  48999 46    89999999999999999998888888877653       5666666643

>PRK13790 phosphoribosylamine--glycine ligase; Provisional

Probab=99.61  E-value=4.7e-15  Score=140.20  Aligned_cols=220  Identities=26%  Similarity=0.400  Sum_probs=136.1

Q ss_pred             hhHHHHHHHhccccCCCCceEEEEEecCCCChh-hHHHHHcCCCEEEeeCCC---CCCHHHHHHHHHHhccccCCCCcee
Q psy13615         22 TNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEG-LNIARNAGIPTKVSTYKH---TLILSNSLQVMQKVGAKYSDIAPFS   97 (263)
Q Consensus        22 snl~al~~~~~~~~~~l~~~iv~Visn~~~a~g-l~~A~~~gIP~~~v~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~   97 (263)
                      ++.+.|++.  ++..  ..+.+.+-+..+.+.+ .+..++.|||++..+...   +.++.+.+++++..++..   ....
T Consensus        14 ~d~~~l~~~--~~~~--~id~vi~g~E~~l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIpt---p~~~   86 (379)
T PRK13790         14 SDHQAILDF--AKQQ--NVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPT---ADYK   86 (379)
T ss_pred             CCHHHHHHH--HHHh--CCCEEEECCcHHHHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCC---CCEE
Confidence            455666543  2212  3455555555544433 456777899877655432   234466666666654443   2222


Q ss_pred             eecccc--------ccCCCCcCCCcEEEeeeeeE--Eee-cCCc---CCc-cccccCCcEEEEecCCCCCccccceeEEE
Q psy13615         98 QDGGET--------AELPGLYQPGDYDLAGFAVG--AVE-KASL---LPK-VKDVAAGDVVIALPSSGIHSNGFSLVLCF  162 (263)
Q Consensus        98 ~~gge~--------~~l~~~~~~d~i~LAG~m~~--~~~-~~~~---in~-hpsl~~g~~ii~Lp~~G~~~~g~Sl~~ai  162 (263)
                      ..-...        -..|=+..|+.  ++| .++  ++. ...+   +.. ...-..+.++|+-.-.|   .++|+. ++
T Consensus        87 ~~~~~~ea~~~~~~~g~PvVvKp~~--~~~-gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G---~E~sv~-~~  159 (379)
T PRK13790         87 EVERKKDALTYIENCELPVVVKKDG--LAA-GKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEG---EEFSLM-TF  159 (379)
T ss_pred             EECCHHHHHHHHHhcCCCEEEEeCC--CCC-CCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccC---ceEEEE-EE
Confidence            211100        01222334332  222 122  222 1111   100 00001244555443455   458874 77


Q ss_pred             ecCcceeec-CCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccC
Q psy13615        163 TDGKTVKVM-PPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTV  241 (263)
Q Consensus       163 ~dg~~~~~~-~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~  241 (263)
                      ++|....++ +++++|||.|+.|.|++||||++++|.|.+++++.+++.+++..+++++|..+|.+|.|++|++|+.+  
T Consensus       160 ~~g~~~~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt--  237 (379)
T PRK13790        160 VNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILT--  237 (379)
T ss_pred             eeCCEEEecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEe--
Confidence            787765555 67889999999999999999999999998888888888789999999999999999999999999954  


Q ss_pred             CceeeecCcceeeeeCCCCCCC
Q psy13615        242 TAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       242 ~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                            ..|+.|+|+|+|||||
T Consensus       238 ------~~g~~viEiN~R~G~p  253 (379)
T PRK13790        238 ------KDGPKVIEFNARFGDP  253 (379)
T ss_pred             ------CCCeEEEEEEcccCCC
Confidence                  4456778999999998

>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=6.4e-15  Score=135.06  Aligned_cols=161  Identities=18%  Similarity=0.226  Sum_probs=124.7

Q ss_pred             CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC----------ChhhHHHHHcCCCEEEeeCCCCCCHH
Q psy13615         10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN----------VEGLNIARNAGIPTKVSTYKHTLILS   77 (263)
Q Consensus        10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~----------a~gl~~A~~~gIP~~~v~~~~~~~~~   77 (263)
                      ++||+||++..  -..|++|+++        +.+|++|+|.-+.          .+..+.|.++|||++......  +. 
T Consensus         1 ~mkivF~GTp~fa~~~L~~L~~~--------~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~--~~-   69 (307)
T COG0223           1 MMRIVFFGTPEFAVPSLEALIEA--------GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLN--DP-   69 (307)
T ss_pred             CcEEEEEcCchhhHHHHHHHHhC--------CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCC--cH-
Confidence            45899999987  5678887732        3799999997322          267889999999977765433  21 


Q ss_pred             HHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeE----EeecC--CcCCccccccCCcEEEEecCCCC
Q psy13615         78 NSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVG----AVEKA--SLLPKVKDVAAGDVVIALPSSGI  151 (263)
Q Consensus        78 ~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~----~~~~~--~~in~hpsl~~g~~ii~Lp~~G~  151 (263)
                         ++.+.+  ++                   .++|+++.+.|.+.    +++..  .++|+||||        ||.   
T Consensus        70 ---e~~~~l--~~-------------------l~~D~ivvvayG~ilp~~iL~~~~~G~iNvH~SL--------LPr---  114 (307)
T COG0223          70 ---EFLEEL--AA-------------------LDPDLIVVVAYGQILPKEILDLPPYGCINLHPSL--------LPR---  114 (307)
T ss_pred             ---HHHHHH--hc-------------------cCCCEEEEEehhhhCCHHHHhcCcCCeEEecCcc--------Ccc---
Confidence               344555  55                   78999999999984    33333  489999999        999   


Q ss_pred             Cccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615        152 HSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA  223 (263)
Q Consensus       152 ~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~  223 (263)
                       ++|.++ +|++.+|+..  +|+|     ++..|+|+|||+|.+|..+++.++|+..++.++       ++.+++..+.+
T Consensus       115 -~RGaAPIq~aI~~Gd~~--TGvT-----im~M~~~lDaG~Il~q~~~~I~~~dta~~L~~kLa~~ga~lL~~~L~~i~~  186 (307)
T COG0223         115 -YRGAAPIQWAILNGDTE--TGVT-----IMQMDEGLDAGDILAQREVPIEPDDTAGSLHDKLAELGAELLLETLPQLEA  186 (307)
T ss_pred             -ccCccHHHHHHHcCCcc--cceE-----EEEccccCCCcceeeeEEeccCCcccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             667777 7888987555  8999     449999999999999999999999999988875       57788888865


Q ss_pred             c
Q psy13615        224 E  224 (263)
Q Consensus       224 e  224 (263)
                      .
T Consensus       187 g  187 (307)
T COG0223         187 G  187 (307)
T ss_pred             C
Confidence            3

>TIGR00460 fmt methionyl-tRNA formyltransferase

Probab=99.53  E-value=1.3e-14  Score=134.16  Aligned_cols=159  Identities=17%  Similarity=0.156  Sum_probs=116.5

Q ss_pred             ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC----------ChhhHHHHHcCCCEEEeeCCCCCCHHH
Q psy13615         11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN----------VEGLNIARNAGIPTKVSTYKHTLILSN   78 (263)
Q Consensus        11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~----------a~gl~~A~~~gIP~~~v~~~~~~~~~~   78 (263)
                      +||++|+|+.  =..|++|++     .   +.++++|+|+.+.          .+..++|+++|||++..+..+.     
T Consensus         1 mkIvf~Gs~~~a~~~L~~L~~-----~---~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~-----   67 (313)
T TIGR00460         1 LRIVFFGTPTFSLPVLEELRE-----D---NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQ-----   67 (313)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----C---CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCc-----
Confidence            3899998876  245555552     1   3689999986422          3478999999999987654431     


Q ss_pred             HHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCC
Q psy13615         79 SLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIH  152 (263)
Q Consensus        79 ~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~  152 (263)
                       .+.++.+  ++                   +++|++++++|+..+    ++  +..++|+|||+        ||.    
T Consensus        68 -~~~~~~l--~~-------------------~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpSl--------LP~----  113 (313)
T TIGR00460        68 -LEELPLV--RE-------------------LKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSL--------LPR----  113 (313)
T ss_pred             -HHHHHHH--Hh-------------------hCCCEEEEccchhhCCHHHHhhccCCEEEecCcc--------ccC----
Confidence             1234445  55                   789999999998742    33  24589999999        998    


Q ss_pred             ccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615        153 SNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA  223 (263)
Q Consensus       153 ~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~  223 (263)
                      ++|.++ .|++.+|..  .+|+| .|    ..+++.|||+|.+|..+++.++|+..++.++       ++.+++..+.+
T Consensus       114 yRG~~pi~wai~~G~~--~tGvT-ih----~~~~~~D~G~Ii~q~~~~I~~~~t~~~l~~~l~~~~~~ll~~~l~~l~~  185 (313)
T TIGR00460       114 WRGGAPIQRAILNGDK--KTGVT-IM----QMVPKMDAGDILKQETFPIEEEDNSGTLSDKLSELGAQLLIETLKELPE  185 (313)
T ss_pred             CCCccHHHHHHHCCCC--eEEEE-EE----EEccccCCCCeEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            445554 567776644  58999 46    8999999999999999999888888877665       46777777653

The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.

>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed

Probab=99.52  E-value=1.7e-14  Score=133.02  Aligned_cols=159  Identities=18%  Similarity=0.221  Sum_probs=114.3

Q ss_pred             ccEEEEEcCc-c-hhHHHHHHHhccccCCCCceEEEEEecCCC----------ChhhHHHHHcCCCEEEeeCCCCCCHHH
Q psy13615         11 KRVAVLISGT-G-TNLKSLLEATSNRSDIMRAEIVLVVSNKHN----------VEGLNIARNAGIPTKVSTYKHTLILSN   78 (263)
Q Consensus        11 ~riavl~SG~-G-snl~al~~~~~~~~~~l~~~iv~Visn~~~----------a~gl~~A~~~gIP~~~v~~~~~~~~~~   78 (263)
                      +||++|+|+. + ..|++|+++        ..++++|+|..+.          .+..++|+++|||++..+...  +   
T Consensus         1 mkIvf~G~~~~a~~~L~~L~~~--------~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~--~---   67 (309)
T PRK00005          1 MRIVFMGTPEFAVPSLKALLES--------GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLR--D---   67 (309)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--------CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCC--C---
Confidence            4899998886 2 566666521        3689999985321          246799999999986543322  2   


Q ss_pred             HHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCC
Q psy13615         79 SLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIH  152 (263)
Q Consensus        79 ~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~  152 (263)
                       .++++.+  ++                   +++|++++++|+..+    ++  +..++|+|||+        ||.    
T Consensus        68 -~~~~~~l--~~-------------------~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpsl--------LP~----  113 (309)
T PRK00005         68 -PEFLAEL--AA-------------------LNADVIVVVAYGQILPKAVLDIPRLGCINLHASL--------LPR----  113 (309)
T ss_pred             -HHHHHHH--Hh-------------------cCcCEEEEehhhcccCHHHHhcCCCCEEEEeCcc--------ccc----
Confidence             2234445  56                   789999999998742    33  23489999999        998    


Q ss_pred             ccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615        153 SNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA  223 (263)
Q Consensus       153 ~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~  223 (263)
                      ++|.++ +|++.+|..  .+|+| .|    ..|++.|+|++.+|.++++.++|+.+++.++       ++.+++..+.+
T Consensus       114 yRG~~pi~wai~~g~~--~~GvT-ih----~~~~~~D~G~Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~  185 (309)
T PRK00005        114 WRGAAPIQRAIIAGDA--ETGVT-IM----QMDEGLDTGDMLLKAEVPITPTDTAGELHDKLAELGADLLVETLKGLED  185 (309)
T ss_pred             CCCccHHHHHHHcCCC--eEEEE-EE----EECCcccCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333333 567776644  48999 47    8899999999999999999888888887765       45667777653

>PRK00885 phosphoribosylamine--glycine ligase; Provisional

Probab=99.46  E-value=4.7e-13  Score=127.78  Aligned_cols=111  Identities=39%  Similarity=0.606  Sum_probs=95.1

Q ss_pred             cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHH
Q psy13615        141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKK  220 (263)
Q Consensus       141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~  220 (263)
                      .++|+-.-.|   .++|+. ++.+|..+.+++.+++|+|+++.|.+++||+|++++|.|.++++..+++.+++..+++++
T Consensus       181 ~vlvEe~i~G---~E~sv~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~a  256 (420)
T PRK00885        181 RVVIEEFLDG---EEASFF-AFVDGENVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKG  256 (420)
T ss_pred             eEEEEEccCC---cEEEEE-EEECCCceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4555443455   458874 778988888999999999999999999999999999999888888888887899999999


Q ss_pred             HHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        221 MIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       221 ~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      |...+++|+|+++++|+.+        ..|+.|+|+|+|||||
T Consensus       257 l~~~gl~~~G~~~ve~~~t--------~~g~~viEin~R~g~~  291 (420)
T PRK00885        257 MAAEGIPYTGVLYAGLMIT--------KDGPKVIEFNARFGDP  291 (420)
T ss_pred             HHHcCCCcEeEEEEEEEEE--------CCCcEEEEEecccCCc
Confidence            9999999999999999954        4455688999999997

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.44  E-value=2.1e-13  Score=137.28  Aligned_cols=159  Identities=16%  Similarity=0.163  Sum_probs=115.9

Q ss_pred             ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC-------ChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615         11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN-------VEGLNIARNAGIPTKVSTYKHTLILSNSLQ   81 (263)
Q Consensus        11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~-------a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~   81 (263)
                      +||+||+|+.  =..|++|+++        +.+|++|++..+.       .+..++|+++|||++..+..+  +    .+
T Consensus         1 mkivf~g~~~~a~~~l~~L~~~--------~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~--~----~~   66 (660)
T PRK08125          1 MKAVVFAYHDIGCVGIEALLAA--------GYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVN--H----PL   66 (660)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC--------CCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCC--c----HH
Confidence            3799998776  3556666521        3689999985321       156789999999998765433  2    22


Q ss_pred             HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccc
Q psy13615         82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNG  155 (263)
Q Consensus        82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g  155 (263)
                      .++.+  ++                   +++|++++++|+..+    ++  +..++|+|||+        ||.    ++|
T Consensus        67 ~~~~l--~~-------------------~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~sl--------LP~----yRG  113 (660)
T PRK08125         67 WVERI--RE-------------------LAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSL--------LPK----YRG  113 (660)
T ss_pred             HHHHH--Hh-------------------cCCCEEEEccccccCCHHHHhhcCCCEEEEeCCc--------ccC----CCC
Confidence            34545  56                   789999999998743    23  34579999999        999    444


Q ss_pred             cce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615        156 FSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA  223 (263)
Q Consensus       156 ~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~  223 (263)
                      .++ +|++.+|..  .+|+| .|    ..|+|.|||+|..|..+|+.++|+..++.++       ++.+++..+.+
T Consensus       114 ~~p~~wai~~g~~--~~GvT-i~----~~~~~~D~G~I~~q~~~~i~~~dt~~~l~~~l~~~~~~l~~~~l~~i~~  182 (660)
T PRK08125        114 RAPLNWVLVNGET--ETGVT-LH----RMVKRADAGAIVAQQRVAIAPDDTALTLHHKLCHAARQLLEQTLPAIKH  182 (660)
T ss_pred             cCHHHHHHHcCCC--cEEEE-EE----EECCCccCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            444 567777654  48999 46    8999999999999999999888888877665       46667776643

>PRK07579 hypothetical protein; Provisional

Probab=99.28  E-value=3.3e-12  Score=113.92  Aligned_cols=155  Identities=13%  Similarity=0.076  Sum_probs=108.6

Q ss_pred             CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhc
Q psy13615         10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVG   87 (263)
Q Consensus        10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~   87 (263)
                      ||||.||.+..  =.+++.|++.    ...+..++.++.++.+.-.+    .-+++|...+        +..+.+-+.+ 
T Consensus         1 ~k~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~~~~~-   63 (245)
T PRK07579          1 MKTILVLTDNVHAHALAVDLIAR----KNDMDVDYFCSFKSQTSFAK----EIYQSPIKQL--------DVAERVAEIV-   63 (245)
T ss_pred             CceEEEEcccHHHHHHHHHHHhh----ccCcceEEEEeccCCccccc----ccccccccCc--------chhhhHHhhh-
Confidence            57899998877  4678888743    34567899998888654221    1233442222        2222222322 


Q ss_pred             cccCCCCceeeeccccccCCCCcCCCcEEEeeeeeE----EeecCCcCCccccccCCcEEEEecCCCCCccccce-eEEE
Q psy13615         88 AKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVG----AVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSL-VLCF  162 (263)
Q Consensus        88 ~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~----~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl-~~ai  162 (263)
                                            -++|++++++|++.    +++..+++|+|||+        ||.    ++|.++ .|++
T Consensus        64 ----------------------~~~DliVvvayg~ilp~~iL~~~~~iNiHpSL--------LP~----yRGaaPi~wAI  109 (245)
T PRK07579         64 ----------------------ERYDLVLSFHCKQRFPAKLVNGVRCINIHPGF--------NPY----NRGWFPQVFSI  109 (245)
T ss_pred             ----------------------cCCCEEEEchhhccCCHHHHhhCCEEEEcCCc--------CCC----CCCcCHHHHHH
Confidence                                  35899999999984    33345799999999        998    334444 5677


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA  223 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~  223 (263)
                      .+|.  . +|+| .|    +.|+|+|||+|.+|..+|+.++|+.+++.++       ++.+++..+.+
T Consensus       110 ~nGe--~-tGvT-ih----~mde~lDtGdIi~Q~~v~I~~~dt~~sL~~kl~~~~~~ll~e~L~~i~~  169 (245)
T PRK07579        110 INGL--K-IGAT-IH----EMDEQLDHGPIIAQREVEIESWDSSGSVYARVMDIERELVLEHFDAIRD  169 (245)
T ss_pred             HCCC--e-EEEE-EE----EEcCCCCCCCeeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7774  3 7999 46    9999999999999999999888888877665       47777877754

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=99.26  E-value=4.5e-11  Score=114.02  Aligned_cols=111  Identities=46%  Similarity=0.685  Sum_probs=94.3

Q ss_pred             cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHH
Q psy13615        141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKK  220 (263)
Q Consensus       141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~  220 (263)
                      .++|+-.-.|   .++|+. .+.+|..+.+++++++|++.++.+.+++||+|++++|.|.++++..+++.+++..+++++
T Consensus       183 ~~lvEe~i~G---~E~sv~-~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~a  258 (423)
T TIGR00877       183 RVVIEEFLDG---EEVSLL-AFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKG  258 (423)
T ss_pred             eEEEEECccC---ceEEEE-EEEcCCeEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4455433355   357774 777888888899999999999999999999999999998888888888888999999999


Q ss_pred             HHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        221 MIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       221 ~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      |...+.+|+|++++.|+.        |..|++++|+|+|+|||
T Consensus       259 L~~~~~~~~G~~~ie~~~--------t~~g~~viEin~R~g~~  293 (423)
T TIGR00877       259 MRKEGTPYKGVLYAGLML--------TKEGPKVLEFNCRFGDP  293 (423)
T ss_pred             HHHhCCCcEeEEEEEEEE--------ECCCcEEEEEEccCCCc
Confidence            999999999999999994        44456788999999996

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase

Probab=99.12  E-value=1.5e-11  Score=116.22  Aligned_cols=138  Identities=39%  Similarity=0.625  Sum_probs=109.0

Q ss_pred             EEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--HHHHHHHHHHh--cc
Q psy13615         13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--LSNSLQVMQKV--GA   88 (263)
Q Consensus        13 iavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--~~~~~~i~~~l--~~   88 (263)
                      +++-.-+-||++....+  ......++.+.+++..|+-.|.|.+       |.+++++....+  .+..+++++++  +|
T Consensus        99 LV~ttD~vgtk~~~a~~--~~~~~~iG~~aVa~nvnDIaamGA~-------P~~~l~~l~~~~l~~~~l~~i~~Gi~~a~  169 (379)
T PLN02557         99 LVAGTDGVGTKLKLAFE--TGIHDTIGIDLVAMSVNDIVTSGAK-------PLFFLDYFATSHLDVDLAEKVIKGIVDGC  169 (379)
T ss_pred             EEEEeCCCCCCchhhhh--cCcHhhHHHHHHHhHHHHHHHcCCC-------hHHhheecccCCCCHHHHHHHHHHHHHHH
Confidence            44444444887764431  1222346788899999999898887       988888765433  37888899988  77


Q ss_pred             ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccceeEEEe
Q psy13615         89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFT  163 (263)
Q Consensus        89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~~ai~  163 (263)
                      ++   ++|.++||||+++|++|..+.+++++++.|++++++++.. ...++||+|+.+++.|+|++|+++.|..+
T Consensus       170 ~~---~Gv~lVGGdT~~~p~~~~~~~~~i~~t~iG~v~~~~~i~~-~~akpGD~Iigl~ssGiHsng~sl~r~~l  240 (379)
T PLN02557        170 QQ---SDCALLGGETAEMPGFYAEGEYDLSGFAVGSVKKDAVIDG-KNIVAGDVLIGLPSSGVHSNGFSLVRRVL  240 (379)
T ss_pred             HH---hCCEEEeecceEccCcccCCceeEEEEEEEEEeccccccc-ccCCCCCEEEEecccccccchhhhhHHHH
Confidence            87   9999999999999999988888899999999987777765 56789999999999999999999865444

>KOG2452|consensus

Probab=97.54  E-value=0.00013  Score=70.20  Aligned_cols=133  Identities=19%  Similarity=0.223  Sum_probs=82.7

Q ss_pred             CceEEEEEec-----CCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhccccCCCCceeeeccccccCCCCcCCC
Q psy13615         39 RAEIVLVVSN-----KHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPG  113 (263)
Q Consensus        39 ~~~iv~Visn-----~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d  113 (263)
                      +.+|+.|.+=     +.|--+++ |++-|+|++-.++-. .+.+...++++..  +.                   +..+
T Consensus        23 gheiv~vftipdk~g~~d~l~~e-a~kdgvpv~k~srwr-~k~~~lp~~~~~y--~~-------------------~gae   79 (881)
T KOG2452|consen   23 GHEVVGVFTVPDKDGKADPLGLE-AEKDGVPVFKYSRWR-AKAQALPDVVAKY--QA-------------------LGAE   79 (881)
T ss_pred             CceEEEEEEecCCCCCcCccccc-ccccCcceechhhhh-hhccccHHHHHHH--Hh-------------------hccc
Confidence            4688877763     33446666 788899988765321 1113444555544  33                   2222


Q ss_pred             cEEEeeeeeE-----Eee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEEecCcceeecCCccccccccCCCC
Q psy13615        114 DYDLAGFAVG-----AVE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDK  185 (263)
Q Consensus       114 ~i~LAG~m~~-----~~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~  185 (263)
                      +=+|- ||.-     +.+  .+.-|-.|||+        ||. .|..++.+    .+..|...  -|.+     +|+-|.
T Consensus        80 lnvlp-fcsqfip~ei~~ap~~~siiyhps~--------lp~hrgasainw----tli~gd~~--~g~s-----ifwadd  139 (881)
T KOG2452|consen   80 LNVLP-FCSQFIPMEIISAPRHGSIIYHPSL--------LPRHRGASAINW----TLIHGDKK--GGFS-----IFWADD  139 (881)
T ss_pred             ccccc-hhhhccchhhcccccCCceeecccc--------CccccCccccce----EEEecccc--CceE-----EEeecC
Confidence            22222 3321     233  23345569999        998 56555443    44444333  3333     679999


Q ss_pred             CCCCCCeeEECcccCCCHHHHHHHHHHHH
Q psy13615        186 GPNTGGMGAYCPCDILTEAQKKEIHDTIL  214 (263)
Q Consensus       186 G~dTGgmga~~pv~i~~~~~~~~i~~~il  214 (263)
                      |.|||++..|-.+.+.++|+...+-.|.+
T Consensus       140 gldtg~~llqk~c~v~~~dt~~tly~rfl  168 (881)
T KOG2452|consen  140 GLDTGDLLLQKECEVLPDDTVSTLYNRFL  168 (881)
T ss_pred             CccccchhhhhhcccCCCccHHHHHHhhc
Confidence            99999999999999999999999988854

>KOG3082|consensus

Probab=97.05  E-value=0.00022  Score=65.27  Aligned_cols=84  Identities=13%  Similarity=0.018  Sum_probs=60.6

Q ss_pred             cCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccccce-eEEEecCcceeecCCccccccccC
Q psy13615        110 YQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYN  182 (263)
Q Consensus       110 ~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~  182 (263)
                      -+.++.+.|.|.+-+    +.  +...+|+|||+        ||.    ++|.++ ++++++|..+  +|+|- .   .-
T Consensus        80 ~~~~l~ItaSfGrllp~kll~~~pyg~iNVHPSL--------LPk----~RGaAPV~~all~GD~~--TGVTI-~---~i  141 (338)
T KOG3082|consen   80 PDDQLAITASFGRLLPFKLLNQLPYGGINVHPSL--------LPK----YRGAAPVQRALLNGDTL--TGVTI-Q---TI  141 (338)
T ss_pred             CCcceEEEeehhccCcHHHHhhCCcceeecChhh--------ccc----ccCcchHHHHHhcCCcc--cceEE-E---Ee
Confidence            567799999999832    11  23579999999        999    555565 6788887554  78873 1   12


Q ss_pred             CCCCCCCCCeeEECcccCCCHHHHHHHHH
Q psy13615        183 NDKGPNTGGMGAYCPCDILTEAQKKEIHD  211 (263)
Q Consensus       183 ~d~G~dTGgmga~~pv~i~~~~~~~~i~~  211 (263)
                      ..+--|.|++.+|.++++-+..+..++..
T Consensus       142 ~p~rFD~G~ilAQ~~l~v~~~~t~~~L~~  170 (338)
T KOG3082|consen  142 DPKRFDKGPILAQEYLAVNPKETAPELTA  170 (338)
T ss_pred             cccccccccceecceeccCccccchHHHH
Confidence            23367899999999999977777776654

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=96.59  E-value=0.012  Score=55.55  Aligned_cols=57  Identities=18%  Similarity=0.122  Sum_probs=42.4

Q ss_pred             eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      +..+.|.+ ++++..+++ .++..+++++|   +  |.|++++.++.+.        .+++|+|+|+|+|++
T Consensus       232 ~~~~~p~~-l~~~~~~~i-~~~~~~~~~~L---~--~~G~~~ve~~~~~--------~~~~viEinpR~~~~  288 (395)
T PRK09288        232 RESWQPQP-MSPAALEEA-QEIAKKVTDAL---G--GRGLFGVELFVKG--------DEVYFSEVSPRPHDT  288 (395)
T ss_pred             EEEECCCC-CCHHHHHHH-HHHHHHHHHHc---C--CeeEEEEEEEEeC--------CeEEEEEecCCCCCC
Confidence            44556765 567777777 47777777777   3  8999999999543        456788999999975

>TIGR00878 purM phosphoribosylaminoimidazole synthetase

Probab=96.55  E-value=0.00029  Score=65.76  Aligned_cols=107  Identities=43%  Similarity=0.627  Sum_probs=75.5

Q ss_pred             ceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC--CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcE
Q psy13615         40 AEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL--ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDY  115 (263)
Q Consensus        40 ~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~--~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i  115 (263)
                      ...+.+..|+-.|.|.+       |..+++...++  +.+..+++++++  .|+.   +++.++||.|...|.+|.++-+
T Consensus        79 ~~av~~n~sDiaa~Ga~-------P~~~~~~l~~~~~~~~~~~~i~~Gi~~a~~~---~g~~ivGG~t~~~~~~~~~~~~  148 (332)
T TIGR00878        79 IDLVAMNVNDLLVQGAE-------PLFFLDYLAVGKLDPEVASQIVKGIAEGCKQ---AGCALVGGETAEMPGMYRGGHY  148 (332)
T ss_pred             HHHHHHHHHHHHHcCCc-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH---cCCEEEceeeeECCCcccCCce
Confidence            33444445555555544       65555543332  247788888888  6676   9999999999999999888667


Q ss_pred             EEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccc
Q psy13615        116 DLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFS  157 (263)
Q Consensus       116 ~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~S  157 (263)
                      .+++++.|++++.+++.. ...++||.|+..-..|.|+.|.+
T Consensus       149 ~i~~t~iG~~~~~~~~~~-~~a~~GD~i~ltg~~G~~~~g~~  189 (332)
T TIGR00878       149 DLAGTAVGVVEKDEIITG-EKVKPGDVLIGLGSSGIHSNGLS  189 (332)
T ss_pred             EEEEEEEEEEcCccccCc-cCCCCCCEEEEECCchHHHHHHH
Confidence            778888888876666554 45689999998877787765543

This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.

>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis

Probab=96.43  E-value=0.00093  Score=61.23  Aligned_cols=108  Identities=40%  Similarity=0.674  Sum_probs=77.9

Q ss_pred             CCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC--CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCC
Q psy13615         38 MRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL--ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPG  113 (263)
Q Consensus        38 l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~--~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d  113 (263)
                      ++...+++..|+-.|.|.+       |..++....++  +.++..++++++  .|+.   +++.++||.|...|.++..+
T Consensus        45 iG~~av~~~~sDiaamGa~-------P~~~~~~l~~~~~~~~~l~~~~~Gi~~~~~~---~gi~ivGGdt~~~~~~~~~~  114 (297)
T cd02196          45 IGIDLVAMCVNDILCQGAE-------PLFFLDYIATGKLDPEVAAEIVKGIAEGCRQ---AGCALLGGETAEMPGVYAEG  114 (297)
T ss_pred             HHHHHHHHhHHHHHHcCCE-------eHHHHhhhhcCCCCHHHHHHHHHHHHHHHHH---cCCeEeeecceEccCcccCC
Confidence            3455666677776777765       76665554443  337788888888  6677   99999999999988888655


Q ss_pred             cEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCcccc
Q psy13615        114 DYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGF  156 (263)
Q Consensus       114 ~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~  156 (263)
                      ...+++.+.|.+++.+++.. ...++||.|+.....|.++.|.
T Consensus       115 ~~~isvt~iG~~~~~~~~~~-~~a~~Gd~I~~tg~~G~~~~g~  156 (297)
T cd02196         115 EYDLAGFAVGVVEKDKIIDG-SKIKPGDVLIGLPSSGLHSNGY  156 (297)
T ss_pred             ceeEEEEEEEEEeccccccc-cCCCCCCEEEEccCcchhhhHH
Confidence            56677778887775555554 5568999999887778776553

The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.

>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional

Probab=96.35  E-value=0.00069  Score=62.97  Aligned_cols=108  Identities=44%  Similarity=0.676  Sum_probs=73.9

Q ss_pred             CceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC--CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCc
Q psy13615         39 RAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL--ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGD  114 (263)
Q Consensus        39 ~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~--~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~  114 (263)
                      +...+++..|+-.|.|.+       |..++....+.  +.++.+++++++  .|+.   +++.++||+|...|.++..+.
T Consensus        78 G~~av~~n~sDIaamGa~-------P~~~~~~l~~~~~~~~~~~~~~~Gi~~~~~~---~g~~ivGGdt~~~~~~~~~~~  147 (327)
T PRK05385         78 GIDLVAMCVNDLLVQGAE-------PLFFLDYIATGKLDPEVAAQVVKGIAEGCEQ---AGCALIGGETAEMPGMYHEGD  147 (327)
T ss_pred             HHHHHHHHHHHHHHcCCC-------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH---cCCeEeCccceECCCcccCCC
Confidence            334445555555555544       66655544332  347778888888  6676   999999999998888774445


Q ss_pred             EEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccc
Q psy13615        115 YDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFS  157 (263)
Q Consensus       115 i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~S  157 (263)
                      .++++++.|.+++.+.+.. ...++||.|+.....|.++.+.+
T Consensus       148 ~~i~~t~~G~~~~~~~~~r-~~a~~GD~I~~tg~~G~~g~g~~  189 (327)
T PRK05385        148 YDLAGFAVGVVEKDKIIDG-SKVKEGDVLIGLASSGLHSNGYS  189 (327)
T ss_pred             eeEEEEEEEEEecccccCc-CCCCCCCEEEEeCCcchhhhHHH
Confidence            5667778887775555554 55689999998877787765543

>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function

Probab=95.55  E-value=0.0093  Score=54.31  Aligned_cols=101  Identities=22%  Similarity=0.225  Sum_probs=69.3

Q ss_pred             ceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCc
Q psy13615         40 AEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGD  114 (263)
Q Consensus        40 ~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~  114 (263)
                      ...+++..|+-.|.|.+       |...+....++   +.++.+++++++  .|+.   +++.++||.|...++...   
T Consensus        61 ~~av~~~~sDi~amGa~-------P~~~~~~l~~p~~~~~~~l~~~~~Gi~~~~~~---~gi~ivGG~t~~~~~~~~---  127 (298)
T cd06061          61 WLAVHIAANDIATSGAR-------PRWLLVTLLLPPGTDEEELKAIMREINEAAKE---LGVSIVGGHTEVTPGVTR---  127 (298)
T ss_pred             eehhhhhHHHHHhcCCC-------CceeEEEEEcCCCCCHHHHHHHHHHHHHHHHH---cCCeEEeeeeEEcCCCCc---
Confidence            34444444454555544       87777665554   347788888888  6677   999999999998776433   


Q ss_pred             EEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCcc
Q psy13615        115 YDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSN  154 (263)
Q Consensus       115 i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~  154 (263)
                      ..+++++.|.++....+.. ...++||.|+..-..|.++.
T Consensus       128 ~~i~vt~~G~~~~~~~~~~-~~a~~Gd~i~ltg~~G~~~~  166 (298)
T cd06061         128 PIISVTAIGKGEKDKLVTP-SGAKPGDDIVMTKGAGIEGT  166 (298)
T ss_pred             cEEEEEEEEEEcccccccc-cCCCCCCEEEEeCCchHHHH
Confidence            4677788887764444433 45689999998877676643

The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=95.37  E-value=0.092  Score=48.99  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=35.7

Q ss_pred             ECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        195 YCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       195 ~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      ..|.. ++++..+++. ++..+++++|     .|.|++.+.++.+..+.       +.|+|+|+|+|++
T Consensus       214 ~~p~~-~~~~~~~~~~-~~a~~i~~~l-----~~~G~~~ve~~~~~dg~-------~~v~EinpR~~~s  268 (352)
T TIGR01161       214 VAPAA-VPDAIQARAE-EIARRLMEEL-----GYVGVLAVEMFVLPDGR-------LLINELAPRVHNS  268 (352)
T ss_pred             ECCCC-CCHHHHHHHH-HHHHHHHHHc-----CceeEEEEEEEEeCCCc-------EEEEEecCCCCCc
Confidence            34443 4555556653 4555555544     46899999999543331       5688999999974

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.27  E-value=0.032  Score=51.66  Aligned_cols=55  Identities=33%  Similarity=0.442  Sum_probs=43.0

Q ss_pred             ccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEE
Q psy13615          7 MVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV   67 (263)
Q Consensus         7 m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~   67 (263)
                      ||++.|++++.+|+ |+.+-..+.    +..  ..++++|+.-+++..++++|+++|+|+.+
T Consensus         1 ~m~klrVAIIGtG~IGt~hm~~l~----~~~--~velvAVvdid~es~gla~A~~~Gi~~~~   56 (302)
T PRK08300          1 MMSKLKVAIIGSGNIGTDLMIKIL----RSE--HLEPGAMVGIDPESDGLARARRLGVATSA   56 (302)
T ss_pred             CCCCCeEEEEcCcHHHHHHHHHHh----cCC--CcEEEEEEeCChhhHHHHHHHHcCCCccc
Confidence            78889999999999 886433331    112  46999999988888899999999999764

>PLN02735 carbamoyl-phosphate synthase

Probab=95.16  E-value=0.081  Score=57.01  Aligned_cols=92  Identities=15%  Similarity=0.183  Sum_probs=60.7

Q ss_pred             ccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Q psy13615        153 SNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEK  232 (263)
Q Consensus       153 ~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L  232 (263)
                      +.++++. ++.|+++....++..+|    ..+.|+.+|.+....|.+.++++..+++.+ +.    .++ .+.+.|+|..
T Consensus       787 g~Ei~V~-vl~D~~G~vv~~~i~e~----~~~~gvhsGds~~~~P~~~L~~e~~~~i~~-~a----~ki-~~~L~~~G~~  855 (1102)
T PLN02735        787 ATEIDVD-ALADSEGNVVIGGIMEH----IEQAGVHSGDSACSLPTQTIPSSCLATIRD-WT----TKL-AKRLNVCGLM  855 (1102)
T ss_pred             cEEEEEE-EEECCCCCEEEecceEe----eeccCccCCCccEEecCCCCCHHHHHHHHH-HH----HHH-HHHcCCccee
Confidence            3456763 67776654333444467    446788999888877776678877777652 22    222 3456688999


Q ss_pred             eeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        233 KRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       233 ~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      .+.|+.+..+       .+.|+|+|+|++.
T Consensus       856 ~vqf~v~~dg-------~~yviEiNpR~s~  878 (1102)
T PLN02735        856 NCQYAITPSG-------EVYIIEANPRASR  878 (1102)
T ss_pred             eEEEEEcCCC-------cEEEEEEeCCCCc
Confidence            9999964322       2468999999973

>TIGR02124 hypE hydrogenase expression/formation protein HypE

Probab=94.71  E-value=0.01  Score=54.96  Aligned_cols=101  Identities=16%  Similarity=0.153  Sum_probs=68.0

Q ss_pred             eEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcE
Q psy13615         41 EIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDY  115 (263)
Q Consensus        41 ~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i  115 (263)
                      ..+++..|+-.|.|.+       |.+.+......   +.++.+++++++  +|+.   +++.++||.|...++- ..+.+
T Consensus        56 ~av~~n~sDiaamGa~-------P~~~~~~l~lp~~~~~~~l~~~~~Gi~~a~~~---~gi~ivGGdt~~~~~~-~~~~~  124 (320)
T TIGR02124        56 LAVCGTVNDVAVSGAK-------PLYLSCGFILEEGFPIEDLERIVKSMAEAARK---AGVKIVTGDTKVVEKG-KADGI  124 (320)
T ss_pred             HHHHHHHHHHHHcCCc-------chhhEEEEEcCCCCCHHHHHHHHHHHHHHHHH---cCCEEEeeeeEEccCC-CCCcE
Confidence            3344444454455544       87776655432   347888899988  7777   9999999999875422 12456


Q ss_pred             EEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCc
Q psy13615        116 DLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHS  153 (263)
Q Consensus       116 ~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~  153 (263)
                      .+++++.|.+++.+++.. ...++||.|+..-..|.++
T Consensus       125 ~i~~t~~G~~~~~~~~~r-~~a~~GD~I~ltg~~G~~g  161 (320)
T TIGR02124       125 FINTTGIGVIPSGIPISA-HNLQPGDKIIVSGTIGDHG  161 (320)
T ss_pred             EEEEEEEEEEcCCccccc-cCCCCCCEEEEeCCccHHH
Confidence            777888888875555443 5568999998776556554

This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.

>cd02197 HypE HypE (Hydrogenase expression/formation protein)

Probab=94.36  E-value=0.016  Score=52.99  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEE
Q psy13615         42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYD  116 (263)
Q Consensus        42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~  116 (263)
                      .+++..|+-.|.|.+       |.+++....+.   +.++.+++++++  .|+.   +++.++||.|...++.. .+.+.
T Consensus        62 av~~~~sDiaamGa~-------P~~~~~~l~lp~~~~~~~l~~~~~Gi~~~~~~---~g~~ivGGdt~~~~~~~-~~~~~  130 (293)
T cd02197          62 AVCGTVNDLAMMGAK-------PLYLSLGFILEEGFPLEDLERIVKSMAEAARE---AGVKIVTGDTKVVPKGK-ADGIF  130 (293)
T ss_pred             HHHhhHHHHHHcCCc-------chhheEEEECCCCCCHHHHHHHHHHHHHHHHH---cCCEEEeceeEeccCCc-cCceE
Confidence            344444444444444       87777766553   337888899988  6676   99999999999754421 23456


Q ss_pred             EeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCc
Q psy13615        117 LAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHS  153 (263)
Q Consensus       117 LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~  153 (263)
                      +.+++.|.+++.+.+.. ...++||.|+..-..|.++
T Consensus       131 i~~t~~G~~~~~~~~~r-~~a~~GD~i~vtG~~G~~~  166 (293)
T cd02197         131 INTTGIGVIPRGVIISP-SNIRPGDKIIVSGTIGDHG  166 (293)
T ss_pred             EEEEEEEEEcCCccccc-cCCCCCCEEEEeCCccHHH
Confidence            77788888775554432 3458999998776666553

HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.

>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes

Probab=94.02  E-value=0.014  Score=53.35  Aligned_cols=77  Identities=19%  Similarity=0.152  Sum_probs=53.7

Q ss_pred             CEEEeeCCCCC------CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccc
Q psy13615         64 PTKVSTYKHTL------ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVK  135 (263)
Q Consensus        64 P~~~v~~~~~~------~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hp  135 (263)
                      |...+....+.      +.++.+++++++  .|+.   +++.++||+|...|      ...+++++.|++++++++.. .
T Consensus        91 P~~~~~~l~lp~~~~~~~~~~l~~~~~Gi~~~~~~---~g~~ivGGdt~~~~------~~~i~~t~~G~~~~~~~~~~-~  160 (287)
T cd02195          91 PLSALAIVTLPRKLPALQEEVLREILAGGKDKLRE---AGAVLVGGHTIEGP------EPKYGLSVTGLVHPNKILRN-S  160 (287)
T ss_pred             HHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHH---cCCcEEeeeeccCC------CcEEEEEEEEEEcchheecC-C
Confidence            65554443332      337788888888  6677   99999999998754      34577788888876666554 5


Q ss_pred             cccCCcEEEEecCCC
Q psy13615        136 DVAAGDVVIALPSSG  150 (263)
Q Consensus       136 sl~~g~~ii~Lp~~G  150 (263)
                      ..++||.|+..-..|
T Consensus       161 ~a~~GD~I~ltg~lG  175 (287)
T cd02195         161 GAKPGDVLILTKPLG  175 (287)
T ss_pred             CCCCCCEEEEcCCch
Confidence            567999998643333

The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.

>TIGR00476 selD selenium donor protein

Probab=93.28  E-value=0.14  Score=47.93  Aligned_cols=67  Identities=22%  Similarity=0.282  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCC
Q psy13615         76 LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIH  152 (263)
Q Consensus        76 ~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~  152 (263)
                      .++.+++++++  +|++   +++.++||+|...|..      .+++++.++.++.+++.. ...++||.|+.....|.+
T Consensus       116 ~~~l~~i~~Gi~~~~~~---~g~~lvGGdT~~~~~~------~i~~t~~G~~~~~~~i~~-~~ak~GD~Iiltg~lG~~  184 (347)
T TIGR00476       116 IEVMREVIQGFKDACRE---AGTSLTGGHTILNPWP------VFGGAVTGVCPEEEVITP-SGAQVGDVLILTKPLGTQ  184 (347)
T ss_pred             HHHHHHHHHHHHHHHHH---cCCCeEeeeeecCCcC------EEEEEEEEEECccceecC-CCCCCCCEEEEECCccHH
Confidence            47888899988  6677   9999999999987632      356777777766666654 567899999988777764

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=93.27  E-value=0.3  Score=52.57  Aligned_cols=88  Identities=23%  Similarity=0.303  Sum_probs=55.1

Q ss_pred             ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEee
Q psy13615        155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKR  234 (263)
Q Consensus       155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~  234 (263)
                      ++++ .++.||..+...++. +|    ....|...|.-....|..-++++..+++. ++..+++++     +.+.|...+
T Consensus       754 E~~V-d~i~dg~~v~i~~i~-e~----~e~~gv~sGds~~v~pp~~l~~~~~~~i~-~~a~ki~~~-----L~~~G~~ni  821 (1068)
T PRK12815        754 EYEV-DAISDGEDVTIPGII-EH----IEQAGVHSGDSIAVLPPQSLSEEQQEKIR-DYAIKIAKK-----LGFRGIMNI  821 (1068)
T ss_pred             eEEE-EEEEcCCceEEeeEE-EE----eeccCCcCCCeeEEECCCCCCHHHHHHHH-HHHHHHHHH-----cCCccEEEE
Confidence            4665 377887766544444 46    33456667765555554445666666665 333344443     346799999


Q ss_pred             ccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        235 GFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       235 gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      .++.++        .++.++|+|+|++.
T Consensus       822 qf~v~~--------~~~yviEiNpR~s~  841 (1068)
T PRK12815        822 QFVLAN--------DEIYVLEVNPRASR  841 (1068)
T ss_pred             EEEEEC--------CcEEEEEEeCCCCc
Confidence            998554        34578899999973

>PRK00943 selenophosphate synthetase; Provisional

Probab=92.99  E-value=0.047  Score=51.32  Aligned_cols=67  Identities=19%  Similarity=0.264  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCC
Q psy13615         76 LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIH  152 (263)
Q Consensus        76 ~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~  152 (263)
                      .++.+++++++  .|+.   +++.++||+|...|..    .+.+  .+.|.+++.+++.. ...++||+|+.--..|.+
T Consensus       115 ~~~l~~i~~Gi~~~~~~---~gv~lvGGdT~~~~~~----~i~~--t~~G~~~~~~~l~~-~~ak~GD~Iivtg~iG~~  183 (347)
T PRK00943        115 PEVAREVLEGGRAACRQ---AGIPLAGGHSIDAPEP----IFGL--AVTGVVPPERVKRN-ATAQAGDKLFLTKPLGIG  183 (347)
T ss_pred             HHHHHHHHHHHHHHHHH---cCCceecccccCCCCc----eEEE--EEEEEEcCCceeeC-CCCCCCCEEEEeCCccHH
Confidence            36788888888  6666   9999999999876522    3333  45666665666654 557899999876555543

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.97  E-value=0.2  Score=44.14  Aligned_cols=56  Identities=29%  Similarity=0.439  Sum_probs=43.5

Q ss_pred             ccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEE
Q psy13615          7 MVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV   67 (263)
Q Consensus         7 m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~   67 (263)
                      |.++.|+++..||+ ||.|-.=+  .  ++++ +.+...++-=+|...|+.||.++|+|+.+
T Consensus         1 m~sk~kvaiigsgni~tdlm~k~--l--r~g~-~le~~~mvgidp~sdglaraarlgv~tt~   57 (310)
T COG4569           1 MSSKRKVAIIGSGNIGTDLMIKI--L--RHGQ-HLEMAVMVGIDPQSDGLARAARLGVATTH   57 (310)
T ss_pred             CCCcceEEEEccCcccHHHHHHH--H--hcCC-cccceeEEccCCCccHHHHHHhcCCcchh
Confidence            78899999999999 88665333  2  2232 35777788889999999999999999754

>PRK07206 hypothetical protein; Provisional

Probab=92.58  E-value=0.54  Score=44.65  Aligned_cols=34  Identities=15%  Similarity=0.019  Sum_probs=23.6

Q ss_pred             HHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        219 KKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       219 ~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      +.+...|+. .|...+.++.+        ..|++++|+|+|+|
T Consensus       256 ~~~~alg~~-~G~~h~E~~~~--------~~g~~liEin~R~~  289 (416)
T PRK07206        256 QALDALGIK-NGPAHAEVMLT--------ADGPRLIEIGARLD  289 (416)
T ss_pred             HHHHHcCCc-cCCceEEEEEc--------CCCCEEEEECCccC
Confidence            334344553 38888999844        44567889999997

>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=92.53  E-value=0.36  Score=46.41  Aligned_cols=53  Identities=15%  Similarity=0.121  Sum_probs=34.3

Q ss_pred             CcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        196 CPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       196 ~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      +|.|..+++..++++ ++..+++     +.+.|.|+..+.++.+..+       .+.++|+|+|++
T Consensus       242 ~p~~~~~~~~~~~i~-~~a~~~~-----~~lg~~g~~~ve~~~~~~g-------~~~viEiN~R~~  294 (450)
T PRK06111        242 APSPFLDEETRKAMG-ERAVQAA-----KAIGYTNAGTIEFLVDEQK-------NFYFLEMNTRLQ  294 (450)
T ss_pred             cCCCCCCHHHHHHHH-HHHHHHH-----HHcCCCCceeEEEEEcCCC-------CEEEEEEECCcC
Confidence            466666776666664 3332333     3456788888999954432       157899999995

>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function

Probab=92.22  E-value=0.054  Score=51.01  Aligned_cols=67  Identities=15%  Similarity=0.119  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcC-CCcEEEeeeeeEEeecCCcCCccccccCCcEEEEec
Q psy13615         76 LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQ-PGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALP  147 (263)
Q Consensus        76 ~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~-~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp  147 (263)
                      .++.+++++++  .|+.   +++.++||+|...|+.+. .+.++++.++.|..++ ..+.. ...++||.|+.--
T Consensus       101 ~~~l~~i~~Gi~~a~~~---~gv~lvGGdT~~~~~~~~~~~~l~~svT~iG~~~~-~~~~r-~gA~pGD~I~vtg  170 (346)
T cd02691         101 VGKLFDFTAGVTAVSEA---TGVPLVAGSTLRIGGDMVLGDRLVGGVGAVGRSKS-DPSRR-KNAEPGDLILMTE  170 (346)
T ss_pred             HHHHHHHHHHHHHHHHH---cCCeEEeeeeEEecCCcccCCceEEEEEEEEEecc-ccccc-cCCCCCCEEEEEC
Confidence            47788888888  6676   999999999988766642 2345566667776653 22222 5678999998653

The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=92.22  E-value=0.54  Score=50.58  Aligned_cols=87  Identities=20%  Similarity=0.235  Sum_probs=54.0

Q ss_pred             ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEee
Q psy13615        155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKR  234 (263)
Q Consensus       155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~  234 (263)
                      ++++ .++.+|..+...++. .|    ....|..+|.-....|...++++..+++. ++..+++++|     .+.|...+
T Consensus       756 E~sV-~~v~dg~~v~i~~i~-e~----i~~~gv~~Gds~~~~p~~~l~~~~~~~i~-~~a~~i~~aL-----g~~G~~~v  823 (1066)
T PRK05294        756 EVDV-DAICDGEDVLIGGIM-EH----IEEAGVHSGDSACSLPPQTLSEEIIEEIR-EYTKKLALEL-----NVVGLMNV  823 (1066)
T ss_pred             EEEE-EEEecCCeEEEeeeE-Ee----eeeccccCCCCcEEecCCCCCHHHHHHHH-HHHHHHHHHc-----CCeeeEEE
Confidence            4665 367787766555555 34    22345666665555554345666666664 4444444433     46799999


Q ss_pred             ccccccCCceeeecCcceeeeeCCCCC
Q psy13615        235 GFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       235 gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      .++.+        ..++.|+|+|+|++
T Consensus       824 qf~~~--------~~~~yViEiNpR~s  842 (1066)
T PRK05294        824 QFAVK--------DDEVYVIEVNPRAS  842 (1066)
T ss_pred             EEEEE--------CCeEEEEEEecCCC
Confidence            99954        34567889999986

>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []

Probab=91.95  E-value=0.25  Score=41.05  Aligned_cols=37  Identities=16%  Similarity=0.106  Sum_probs=22.6

Q ss_pred             HHHHHHHhcCC-CeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        216 RVIKKMIAEGT-PFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       216 ~~i~~~~~eg~-~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      ...+.+. +-+ .+.|..-++|+.++        .++.|+|+|+||+
T Consensus       122 ~~~~~i~-~~l~gl~G~~giD~I~~~--------~~~~viEINPR~t  159 (161)
T PF02655_consen  122 ELARRIA-EALPGLRGYVGIDFILDD--------GGPYVIEINPRFT  159 (161)
T ss_dssp             HHHHHHH-TTSTT--EEEEEEEEESS---------SEEEEEEESS--
T ss_pred             HHHHHHH-HHcCCCeeeEeEEEEEeC--------CcEEEEEEcCCCC
Confidence            3344442 344 79999999999554        5556889999996

This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.

>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein

Probab=91.90  E-value=0.13  Score=44.64  Aligned_cols=78  Identities=26%  Similarity=0.302  Sum_probs=51.4

Q ss_pred             CEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccccc
Q psy13615         64 PTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVA  138 (263)
Q Consensus        64 P~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~  138 (263)
                      |....+...++   +.+..+++++++  .|++   +++.++||+|..-++. ..+...+.+++.|.+++.+.+.. ...+
T Consensus        39 P~~~~~~l~~~~~~~~~~~~~~~~Gi~~~~~~---~gi~ivgG~t~~~~~~-~~~~~~i~~t~~G~~~~~~~~~~-~~~~  113 (222)
T cd00396          39 PIALLASLSLSNGLEVDILEDVVDGVAEACNQ---LGVPIVGGHTSVSPGT-MGHKLSLAVFAIGVVEKDRVIDS-SGAR  113 (222)
T ss_pred             cHHHhhheccCCCCCHHHHHHHHHHHHHHHHH---cCCeEeceeeEEccCC-cCCCceEEEEEEEEecCCccccc-cCCC
Confidence            54444443332   236778888888  6666   9999999999887665 23345667777887764444321 3457


Q ss_pred             CCcEEEEe
Q psy13615        139 AGDVVIAL  146 (263)
Q Consensus       139 ~g~~ii~L  146 (263)
                      +||.|+..
T Consensus       114 ~Gd~lv~~  121 (222)
T cd00396         114 PGDVLILT  121 (222)
T ss_pred             CCCEEEEe
Confidence            99999863

This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit

Probab=91.71  E-value=0.57  Score=50.40  Aligned_cols=89  Identities=18%  Similarity=0.232  Sum_probs=57.4

Q ss_pred             ccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Q psy13615        153 SNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEK  232 (263)
Q Consensus       153 ~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L  232 (263)
                      +.++++ .++.++..+...+++ .|    ....|..+|......|...++++..+++. ++..++.++|     .+.|..
T Consensus       754 G~E~~V-d~l~d~g~v~i~~i~-e~----~~~~gv~sGds~~~~P~~~l~~~~~~~i~-~~a~ki~~aL-----gi~G~~  821 (1050)
T TIGR01369       754 AVEVDV-DAVSDGEEVLIPGIM-EH----IEEAGVHSGDSTCVLPPQTLSAEIVDRIK-DIVRKIAKEL-----NVKGLM  821 (1050)
T ss_pred             CeEEEE-EEEEeCCEEEEEEEE-Ee----ecccCCcCCCceEEecCCCCCHHHHHHHH-HHHHHHHHHC-----CCcceE
Confidence            344665 377887666665555 35    23456777776666666556777666664 4444444443     357999


Q ss_pred             eeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        233 KRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       233 ~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      .+.++.++        .++.++|+|+|++
T Consensus       822 ~vqf~~~~--------~~~yvIEvNpR~s  842 (1050)
T TIGR01369       822 NIQFAVKD--------GEVYVIEVNPRAS  842 (1050)
T ss_pred             EEEEEEEC--------CeEEEEEEeCCCC
Confidence            99999543        4567889999985

In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.

>PRK05731 thiamine monophosphate kinase; Provisional

Probab=91.45  E-value=0.083  Score=48.70  Aligned_cols=83  Identities=18%  Similarity=0.122  Sum_probs=56.0

Q ss_pred             CCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccc
Q psy13615         63 IPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDV  137 (263)
Q Consensus        63 IP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl  137 (263)
                      -|..++......   +.+..+++++++  .|+.   +++.++||.|..-|.      ..++.++.|++++.+.+.. ...
T Consensus        80 ~P~~~~~~l~~p~~~~~~~l~~i~~Gi~~~~~~---~g~~ivGG~t~~~~~------~~i~vt~iG~~~~~~~~~~-~~a  149 (318)
T PRK05731         80 RPAAFLLALALPKDLDEAWLEALADGLFELADR---YGAELIGGDTTRGPD------LSISVTAIGDVPGGRALRR-SGA  149 (318)
T ss_pred             CcceEEEEEEcCCCCCHHHHHHHHHHHHHHHHH---hCCeEECcccCCCCC------cEEEEEEEEEcCCCCcccc-cCC
Confidence            376666544333   346788888888  6666   999999999985432      4456677887765544443 345


Q ss_pred             cCCcEEEEecCCCCCccc
Q psy13615        138 AAGDVVIALPSSGIHSNG  155 (263)
Q Consensus       138 ~~g~~ii~Lp~~G~~~~g  155 (263)
                      ++||.|+..-..|.++.+
T Consensus       150 ~~Gd~i~ltg~~G~~~~g  167 (318)
T PRK05731        150 KPGDLVAVTGTLGDSAAG  167 (318)
T ss_pred             CCCCEEEEECCccHHHHH
Confidence            799999877666666544

>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function

Probab=91.31  E-value=0.16  Score=46.35  Aligned_cols=87  Identities=21%  Similarity=0.154  Sum_probs=59.3

Q ss_pred             EEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeee
Q psy13615         43 VLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGF  120 (263)
Q Consensus        43 v~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~  120 (263)
                      +++..|+..|.|.+       |..++....+.+.++.+++++++  .|+.   +++.++||+|..    +. ..-.+...
T Consensus        72 v~~~vsDiaa~Ga~-------P~~~~~~l~~p~~e~l~~i~~Gi~~a~~~---~gi~ivGGdt~~----~~-~~~~i~vt  136 (283)
T cd02192          72 VLVNVSDIAAMGGR-------PLAMVDALWSPSAEAAAQVLEGMRDAAEK---FGVPIVGGHTHP----DS-PYNALSVA  136 (283)
T ss_pred             HHHHHHHHHhcCCE-------eeeeeeeecCCCHHHHHHHHHHHHHHHHH---cCCcEecccCCC----CC-CCCeEEEE
Confidence            33444444445544       98888888777778889999988  6677   999999999963    11 11134455


Q ss_pred             eeEEeecCCcCCccccccCCcEEEEe
Q psy13615        121 AVGAVEKASLLPKVKDVAAGDVVIAL  146 (263)
Q Consensus       121 m~~~~~~~~~in~hpsl~~g~~ii~L  146 (263)
                      +.|.+++.+.+ . ...++||.|+..
T Consensus       137 ~iG~~~~~~~~-r-~~a~~GD~I~vt  160 (283)
T cd02192         137 ILGRARKDLLI-S-FGAKPGDRLILA  160 (283)
T ss_pred             EEEEEcCCccc-c-CCCCCCCEEEEE
Confidence            67777655544 3 556899999865

The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.

>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine

Probab=91.17  E-value=0.45  Score=43.21  Aligned_cols=86  Identities=17%  Similarity=0.145  Sum_probs=60.2

Q ss_pred             CCCEEEeeCCCCCC---HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccc
Q psy13615         62 GIPTKVSTYKHTLI---LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD  136 (263)
Q Consensus        62 gIP~~~v~~~~~~~---~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hps  136 (263)
                      +-|...+....+.+   .++.+++++++  +|+.   +++.++||+|..-+      ...+++++.|..++.+.+.. ..
T Consensus        76 a~P~~~~~~l~~p~~~~~~~l~~i~~Gi~~a~~~---~g~~liGGdt~~~~------~~~i~vt~iG~~~~~~~~~~-~~  145 (291)
T cd02194          76 ARPLGFLLSLGLPPDTDEEWLEEFYRGLAEAADR---YGVPLVGGDTTSGS------ELVISVTALGEVEKGKPLRR-SG  145 (291)
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHHHHHHHHH---cCCeEEcccCCCCC------CeEEEEEEEEecCCCCceec-CC
Confidence            44877776655543   47888888888  6677   99999999997632      45566777887764445544 44


Q ss_pred             ccCCcEEEEecCCCCCccccc
Q psy13615        137 VAAGDVVIALPSSGIHSNGFS  157 (263)
Q Consensus       137 l~~g~~ii~Lp~~G~~~~g~S  157 (263)
                      .++||.|+..-..|.++.++.
T Consensus       146 a~~GD~I~ltg~~G~~~~g~~  166 (291)
T cd02194         146 AKPGDLLYVTGTLGDAAAGLA  166 (291)
T ss_pred             CCCCCEEEEeCCccHHHHHHH
Confidence            579999987766676655443

Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=91.10  E-value=1.4  Score=41.66  Aligned_cols=57  Identities=16%  Similarity=0.232  Sum_probs=36.9

Q ss_pred             CeeEE--CcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCc-ceeeeeCCCCCC
Q psy13615        191 GMGAY--CPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRN-RREKEDNPEEGD  262 (263)
Q Consensus       191 gmga~--~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~-~~~~e~n~~~gd  262 (263)
                      |+..+  .|.. .+++..++++ ++...+++.|     .|.|++.+.|+.+.        .| +.|+|+|+|++.
T Consensus       210 gi~~~~~~pa~-~~~~~~~~~~-~~a~~i~~~L-----~~~G~~~vEff~~~--------dg~~~v~EinpR~~~  269 (372)
T PRK06019        210 GILRTSIAPAR-ISAELQAQAE-EIASRIAEEL-----DYVGVLAVEFFVTG--------DGELLVNEIAPRPHN  269 (372)
T ss_pred             CEEEEEECCCC-CCHHHHHHHH-HHHHHHHHHc-----CccceeEEEEEEcC--------CCeEEEEEecCCccC
Confidence            45443  4443 4566666663 5555555544     47899999999543        33 568999999974

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed

Probab=90.81  E-value=1.1  Score=40.63  Aligned_cols=64  Identities=19%  Similarity=0.276  Sum_probs=41.8

Q ss_pred             CCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        184 DKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       184 d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      +....+|+....+|. ..+++..++++ ++...+++.+   +  +.|...+.++.+..|       .+.|+|+|+|+|
T Consensus       208 ~~~~~~g~~~~~~p~-~~~~~~~~~l~-~~a~~~~~~l---g--~~g~~~iD~~~~~~g-------~~~viEvN~~p~  271 (304)
T PRK01372        208 EAKYLAGGTQYICPA-GLPAEIEAELQ-ELALKAYRAL---G--CRGWGRVDFMLDEDG-------KPYLLEVNTQPG  271 (304)
T ss_pred             eccccCCCeEEEeCC-CCCHHHHHHHH-HHHHHHHHHh---C--CcceEEEEEEEcCCC-------CEEEEEecCCCC
Confidence            345667777777765 35667666664 4444444443   4  568888999965533       246889999987

>TIGR01379 thiL thiamine-monophosphate kinase

Probab=90.44  E-value=0.2  Score=46.26  Aligned_cols=85  Identities=19%  Similarity=0.154  Sum_probs=57.5

Q ss_pred             CCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccc
Q psy13615         62 GIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD  136 (263)
Q Consensus        62 gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hps  136 (263)
                      +-|...+......   +....+++++++  +|+.   +++.++||.|..-+      ...+.+.+.|..+..+.+.. ..
T Consensus        77 a~P~~~~~~~~~P~~~~~~~l~~i~~Gi~~a~~~---~g~~ivGG~t~~~~------~~~i~vt~iG~~~~~~~~~~-~~  146 (317)
T TIGR01379        77 ATPKWFLLSLGLPSDLDEAWLEAFYDGLFECAKQ---YGVPLVGGDTVSSP------ELVVTVTAIGEAPKGRALLR-SG  146 (317)
T ss_pred             CcccEEEEEEEcCCCCCHHHHHHHHHHHHHHHHH---cCCeEECccCCCCC------CcEEEEEEEEEeCCCCceec-CC
Confidence            3476665433332   235678888888  6676   99999999998643      24455667787765555554 44


Q ss_pred             ccCCcEEEEecCCCCCcccc
Q psy13615        137 VAAGDVVIALPSSGIHSNGF  156 (263)
Q Consensus       137 l~~g~~ii~Lp~~G~~~~g~  156 (263)
                      .++||.|+..-..|.++.++
T Consensus       147 a~~Gd~I~ltg~~G~~~~~~  166 (317)
T TIGR01379       147 AKPGDLVFVTGTLGDSAAGL  166 (317)
T ss_pred             CCCCCEEEEcCchhHHHHHH
Confidence            58999999877777766543

Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.

>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase

Probab=90.30  E-value=1.4  Score=40.03  Aligned_cols=66  Identities=18%  Similarity=0.201  Sum_probs=39.2

Q ss_pred             CCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        182 NNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       182 ~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      ..+.....|+.....|.+ .+++..++++ ++..++.++|   +  +.|..-+.++.+..+       .+.++|+|+++|
T Consensus       221 ~~~~~~~~~~~~~~~p~~-l~~~~~~~i~-~~a~~~~~~l---g--~~G~~~vD~~~~~~g-------~~~viEvN~~pg  286 (315)
T TIGR01205       221 DYEAKYLDGSTEYVIPAP-LDEELEEKIK-ELALKAYKAL---G--CRGLARVDFFLDEEG-------EIYLNEINTIPG  286 (315)
T ss_pred             CcccccCCCCeeEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--CCceEEEEEEEeCCC-------CEEEEEeeCCCC
Confidence            334444455554545554 4666666664 4444444544   3  358888888854332       257899999987

but a number of antibiotic resistance proteins score above the trusted cutoff of this model.

>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2

Probab=89.85  E-value=0.18  Score=46.85  Aligned_cols=91  Identities=21%  Similarity=0.183  Sum_probs=59.9

Q ss_pred             ceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEE
Q psy13615         40 AEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDL  117 (263)
Q Consensus        40 ~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~L  117 (263)
                      ...+.+..|+..|.|.+       |..++....+.+.++.+++++++  +|+.   +++.++||.|..- .-|    ..+
T Consensus        79 ~~av~~nlsDiaamGa~-------P~~~~~~L~~~~~~~l~~~~~Gi~~a~~~---~gi~ivGGdT~~~-~~~----~~i  143 (323)
T TIGR03267        79 YCAVLVNVNDIAAMGGK-------PVGMVNVLSINDVDVCREVLEGMREGAWK---FGVPVVGGHTHPD-TPY----NAL  143 (323)
T ss_pred             HHhhhhhhhhHHhcCCE-------ehhHhhhhcCCCHHHHHHHHHHHHHHHHH---cCCCEEccccCCC-CCc----cee
Confidence            44555666666666655       87776666666667788888888  6676   9999999999531 112    123


Q ss_pred             eeeeeEEeecCCcCCccccccCCcEEEEe
Q psy13615        118 AGFAVGAVEKASLLPKVKDVAAGDVVIAL  146 (263)
Q Consensus       118 AG~m~~~~~~~~~in~hpsl~~g~~ii~L  146 (263)
                      ..++.|..++.+++.. ...++||.|+..
T Consensus       144 ~vt~iG~~~~~~~~~r-~~a~~GD~I~vt  171 (323)
T TIGR03267       144 DVAIVGIAKEDCIIRS-DTAKPGDLIIFA  171 (323)
T ss_pred             eEEEEEEEcCcceeeC-CCCCCCCEEEEE
Confidence            4456666665555544 445799999743

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK02186 argininosuccinate lyase; Provisional

Probab=89.78  E-value=1.5  Score=46.31  Aligned_cols=99  Identities=17%  Similarity=0.236  Sum_probs=54.1

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK  219 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~  219 (263)
                      ++++|+-.-.|.   ++++. .+.++.+..+.+++..+     ....+..-.++...|.+ .+++..+++. ++..++++
T Consensus       180 ~~~lvEEfI~G~---E~sVe-~i~~~g~~~i~~i~~k~-----~~~~~~~ve~g~~~P~~-l~~~~~~~l~-~~~~~~l~  248 (887)
T PRK02186        180 RAALVQAYVEGD---EYSVE-TLTVARGHQVLGITRKH-----LGPPPHFVEIGHDFPAP-LSAPQRERIV-RTVLRALD  248 (887)
T ss_pred             CcEEEeecccCC---cEEEE-EEEECCcEEEEEEEeee-----cCCCCCeEEeccccCCC-CCHHHHHHHH-HHHHHHHH
Confidence            455554444553   47763 55655556666666422     11222222223344554 3555555553 44444444


Q ss_pred             HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      ++   |+. .|...+.++.+        ..++.++|+|+|+|
T Consensus       249 aL---G~~-~G~~hvE~~~t--------~~g~~liEIn~R~~  278 (887)
T PRK02186        249 AV---GYA-FGPAHTELRVR--------GDTVVIIEINPRLA  278 (887)
T ss_pred             Hc---CCC-cCceEEEEEEE--------CCCEEEEEECCCCC
Confidence            43   544 48888888844        34567899999986

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=89.30  E-value=1.9  Score=46.53  Aligned_cols=102  Identities=16%  Similarity=0.206  Sum_probs=61.1

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcce-eecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTV-KVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI  218 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~-~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i  218 (263)
                      ++++|+-.-.|.  .++++. .+.|+++. ...+....+     .+.|..||.....+|...++++..++++ ++..+++
T Consensus       202 ~~vLVEe~I~G~--~E~sv~-v~rD~~g~~~~~~~~e~~-----~p~gi~tG~s~~v~Pa~~l~~~~~~~l~-~~a~ki~  272 (1068)
T PRK12815        202 HQCLLEESIAGW--KEIEYE-VMRDRNGNCITVCNMENI-----DPVGIHTGDSIVVAPSQTLTDDEYQMLR-SASLKII  272 (1068)
T ss_pred             CeEEEEEccCCC--eEEEEE-EEEcCCCCEEEEEeceec-----ccccccCCceEEEecCCCCCHHHHHHHH-HHHHHHH
Confidence            345554333442  246653 55554443 233333211     2457788888887787667777777765 5555555


Q ss_pred             HHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        219 KKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       219 ~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      +.|   +  ++|..-+.++.+..+.      .+.|+|+|+|+.
T Consensus       273 ~~L---g--~~G~~~vef~l~~~~g------~~~ViEINPR~~  304 (1068)
T PRK12815        273 SAL---G--VVGGCNIQFALDPKSK------QYYLIEVNPRVS  304 (1068)
T ss_pred             HHc---C--CCCceEEEEEEECCCC------cEEEEEEecCcc
Confidence            554   3  5899999999543322      257899999985

>PRK14105 selenophosphate synthetase; Provisional

Probab=89.06  E-value=0.65  Score=43.50  Aligned_cols=67  Identities=21%  Similarity=0.240  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCC
Q psy13615         76 LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIH  152 (263)
Q Consensus        76 ~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~  152 (263)
                      .++.+++++++  .|++   +++.++||+|..-|.      -.+++.+.++.++.+++.. ...++||+|+.--..|.|
T Consensus       112 ~~~l~~i~~Gi~~~~~~---~gv~lvGGdT~~~~~------~~l~~svtg~g~~~~~i~r-~ga~~GD~I~vTg~lG~~  180 (345)
T PRK14105        112 IEVAKEMLQGFQDFCRE---NDTTIIGGHTILNPW------PLIGGAVTGVGKEEDILTK-AGAKEGDVLILTKPLGTQ  180 (345)
T ss_pred             HHHHHHHHHHHHHHHHH---hCCEEEeeeeccCCC------CEEEEEEEEEEcccceeeC-CCCCCCCEEEEeCCChHH
Confidence            47888888888  6666   999999999987542      2255666666655556554 557899999877666655

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=88.83  E-value=1.2  Score=40.94  Aligned_cols=51  Identities=37%  Similarity=0.560  Sum_probs=39.5

Q ss_pred             CccEEEEEcCc-chhH-HHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEE
Q psy13615         10 RKRVAVLISGT-GTNL-KSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV   67 (263)
Q Consensus        10 ~~riavl~SG~-Gsnl-~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~   67 (263)
                      +.|++++.+|+ |+.+ ..+++     ..  ..++++|+.-+++..++++|+++|+|+++
T Consensus         1 klrVAIIG~G~IG~~h~~~ll~-----~~--~~elvaV~d~d~es~~la~A~~~Gi~~~~   53 (285)
T TIGR03215         1 KVKVAIIGSGNIGTDLMYKLLR-----SE--HLEMVAMVGIDPESDGLARARELGVKTSA   53 (285)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHh-----CC--CcEEEEEEeCCcccHHHHHHHHCCCCEEE
Confidence            35899999998 8765 44441     12  46899988888888888999999999876

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

Probab=87.86  E-value=1.4  Score=41.40  Aligned_cols=99  Identities=25%  Similarity=0.319  Sum_probs=64.4

Q ss_pred             eEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcE
Q psy13615         41 EIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDY  115 (263)
Q Consensus        41 ~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i  115 (263)
                      =-+++-+|+-...|++       |-+.....-..   +.+..+++++.+  .|+.   .|+++++|-|...|+.-.+.++
T Consensus        73 lAV~gt~NDlav~GA~-------P~~l~~~lil~eg~~~e~l~~i~~si~e~a~~---~Gv~IvtGdTkV~~~~~~~~vi  142 (339)
T COG0309          73 LAVHGTANDVAVSGAK-------PRYLSVGLILPEGLPIEDLERILKSIDEEAEE---AGVSIVTGDTKVVPGGKDPIVI  142 (339)
T ss_pred             EEEEEehhhhhhcCCC-------ceeeeEeEecCCCCCHHHHHHHHHHHHHHHHH---cCCeEEccCceeecCCCCCcEE
Confidence            3466667776667766       65543322211   236777888877  3344   9999999999999888655566


Q ss_pred             EEeeeeeEEeecCCcCCcccc-ccCCcEEEEecCCCCCc
Q psy13615        116 DLAGFAVGAVEKASLLPKVKD-VAAGDVVIALPSSGIHS  153 (263)
Q Consensus       116 ~LAG~m~~~~~~~~~in~hps-l~~g~~ii~Lp~~G~~~  153 (263)
                      ..+|  .|+..++..+.  |+ +++||.||.--+.|.|+
T Consensus       143 ~tt~--iG~~~~~~~v~--~~~~~~GD~vI~tg~~g~hg  177 (339)
T COG0309         143 NTTG--IGIIDKEILVS--PSGARPGDAVIVTGTIGIHG  177 (339)
T ss_pred             Eeee--EEeecCCcccc--cCCCCCCCEEEEcCChhHHH
Confidence            6654  55555343333  44 79999998765566664

>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=87.80  E-value=1  Score=39.50  Aligned_cols=84  Identities=14%  Similarity=0.197  Sum_probs=52.7

Q ss_pred             EEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccc
Q psy13615        160 LCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEG  239 (263)
Q Consensus       160 ~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~  239 (263)
                      +.+.|+.+..+....++|    ....  ++|-....+|.+.++++..++|. +.-..+.     ..+.|.|..-+.|...
T Consensus        98 qvi~D~~gn~~~~~~~e~----~~~~--hs~dsi~~~P~~~L~~~~~~~l~-~~a~~ia-----~~l~~~G~~tvef~~~  165 (211)
T PF02786_consen   98 QVIRDGKGNVVHLGEREC----SEQR--HSQDSIEEAPAQTLSDEERQKLR-EAAKKIA-----RALGYVGAGTVEFAVD  165 (211)
T ss_dssp             EEEEETTSEEEEEEEEEE----EEEE--TTEEEEEEES-SSS-HHHHHHHH-HHHHHHH-----HHTT-EEEEEEEEEEE
T ss_pred             hhhhccccceeeeeeecc----cccc--ccccceeEeeccccchHHHHHHH-HHHHHHH-----HhhCeeecceEEEEEc
Confidence            367777765544445555    1111  77778889999999999888876 2222222     3456899999999965


Q ss_pred             cCCceeeecCcceeeeeCCCCC
Q psy13615        240 TVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       240 ~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      ..+.      ..-++|.|+|+-
T Consensus       166 ~~~~------~~y~lEvNpR~~  181 (211)
T PF02786_consen  166 PDDG------EFYFLEVNPRLQ  181 (211)
T ss_dssp             TTTT------EEEEEEEESS--
T ss_pred             cCcc------ceeeecccCCCC
Confidence            4333      346999999963

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....

>PRK14571 D-alanyl-alanine synthetase A; Provisional

Probab=86.88  E-value=3.6  Score=37.37  Aligned_cols=91  Identities=16%  Similarity=0.138  Sum_probs=46.4

Q ss_pred             cccceeEEEecCcceeecCCcccc-c-cccCCCCCCCCCCeeE-ECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Q psy13615        154 NGFSLVLCFTDGKTVKVMPPSQDH-K-RKYNNDKGPNTGGMGA-YCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVG  230 (263)
Q Consensus       154 ~g~Sl~~ai~dg~~~~~~~~t~dh-k-r~~~~d~G~dTGgmga-~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G  230 (263)
                      .++++. .+.++.+...+|++..+ + +.++-+... ++|... ..|.+ ++++..++++ ++..++.+++   |  +.|
T Consensus       173 ~E~sv~-vl~~~~~~~vl~~~e~~~~~~~~~~~~k~-~~g~~~~~~p~~-l~~~~~~~i~-~~a~~~~~~l---g--~~g  243 (299)
T PRK14571        173 REMTVS-ILETEKGFEVLPILELRPKRRFYDYVAKY-TKGETEFILPAP-LNPEEERLVK-ETALKAFVEA---G--CRG  243 (299)
T ss_pred             eEEEEE-EEcCCCCeeeeceEEEecCCCcccccccc-CCCCeeEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--CCc
Confidence            456652 33344445567766421 1 121111222 233333 23554 4666666664 3443444433   4  457


Q ss_pred             EEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        231 EKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       231 ~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      +.-+.++.+.        .++.|+|+|.++|
T Consensus       244 ~~rvD~~~~~--------~~~~viEiN~~Pg  266 (299)
T PRK14571        244 FGRVDGIFSD--------GRFYFLEINTVPG  266 (299)
T ss_pred             eEEEEEEEEC--------CcEEEEEeeCCCC
Confidence            7777777432        3457889999997

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit

Probab=86.60  E-value=4.8  Score=38.88  Aligned_cols=57  Identities=14%  Similarity=0.101  Sum_probs=35.5

Q ss_pred             eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      .....|.+.++++..+++. +....+++   .-+  |.|...+.++.+..+       .+.++|+|+|++
T Consensus       238 ~~~~~p~~~l~~~~~~~i~-~~a~~~~~---~lg--~~G~~~vef~~~~~g-------~~~viEiNpR~~  294 (449)
T TIGR00514       238 LLEEAPSPALTPELRRKMG-DAAVKAAV---SIG--YRGAGTVEFLLDKNG-------EFYFMEMNTRIQ  294 (449)
T ss_pred             eEEECCCCCCCHHHHHHHH-HHHHHHHH---HCC--CcceEEEEEEEeCCC-------CEEEEEEECCCC
Confidence            4455666666776665554 33323333   334  579999999955322       246889999995

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=85.46  E-value=3.2  Score=44.75  Aligned_cols=65  Identities=18%  Similarity=0.227  Sum_probs=45.0

Q ss_pred             CCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        185 KGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFV-GEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       185 ~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~-G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      .|..+|+....+|...++++..++++ ++..++++.     +.+. |.+-+.++.+..+++      +.|+|+|+|++
T Consensus       240 ~gih~g~~~~~~Pa~~l~~~~~~~l~-~~a~ki~~a-----Lg~~~G~~~vef~~~~~~g~------~~viEiNPR~~  305 (1066)
T PRK05294        240 MGVHTGDSITVAPAQTLTDKEYQMLR-DASIAIIRE-----IGVETGGCNVQFALNPKDGR------YIVIEMNPRVS  305 (1066)
T ss_pred             cceecCCeEEEeCCCCCCHHHHHHHH-HHHHHHHHH-----cCCccCceEEEEEEECCCCc------EEEEEeecCCC
Confidence            46788888777777556777766664 444444444     4588 999999995543332      46999999986

>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat

Probab=85.45  E-value=1.2  Score=41.03  Aligned_cols=115  Identities=20%  Similarity=0.057  Sum_probs=70.3

Q ss_pred             EEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--------------HHHH
Q psy13615         14 AVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--------------LSNS   79 (263)
Q Consensus        14 avl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--------------~~~~   79 (263)
                      ++.++..++++-.-++     .-...+..++...++..|.|.+       |..++....+++              .+..
T Consensus        27 ~~~~~~e~~~~~~~~~-----p~~~g~~~v~~~vsDiaamGa~-------P~~~~~~l~~p~~~~~~~~~~~~~~~~~~l   94 (313)
T cd02203          27 AVVFKVETHNHPSAIE-----PFGGAATGVGGIIRDILSMGAR-------PIALLDGLRFGDLDIPGYEPKGKLSPRRIL   94 (313)
T ss_pred             EEEEEeccCCCCCCcC-----CcccHhhhhhhhhhcccccCCE-------EEEEeeEEeecCCcccccccccccCHHHHH
Confidence            4555555555432221     1112345566667777777766       877776554422              2557


Q ss_pred             HHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEe
Q psy13615         80 LQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIAL  146 (263)
Q Consensus        80 ~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~L  146 (263)
                      +++++++  .|+.   +++.++||.|...++.+..-.+  .+.+.|.+++++++.. ...++||.|+.+
T Consensus        95 ~~~~~Gi~~~~~~---~gv~lvGGdt~~~~~~~~~p~~--~~~~~G~~~~~~~~~~-~~a~~GD~I~l~  157 (313)
T cd02203          95 DGVVAGISDYGNC---IGIPTVGGEVRFDPSYYGNPLV--NVGCVGIVPKDHIVKS-KAPGPGDLVVLV  157 (313)
T ss_pred             HHHHHHHHHHHHH---hCCceeeeEEEEECCcCCCceE--EEEEEEEEehhhcccC-CCCCCCCEEEEe
Confidence            7788887  6666   9999999999987665322222  3346676664445443 445799999876

FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.

>PLN02735 carbamoyl-phosphate synthase

Probab=85.19  E-value=3.7  Score=44.55  Aligned_cols=66  Identities=21%  Similarity=0.330  Sum_probs=45.6

Q ss_pred             CCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCe-EEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        184 DKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPF-VGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       184 d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~-~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      ..|..+|.+...+|...++++..++++ +....+++.|   |  + .|..-+.++.+..+.+      +.|+|+|+|++
T Consensus       256 p~gvh~G~s~~vaPa~tL~~~~~q~l~-~~A~ki~~aL---g--i~~G~~nVqf~l~~~~g~------~~ViEVNPR~s  322 (1102)
T PLN02735        256 PMGVHTGDSITVAPAQTLTDKEYQRLR-DYSVAIIREI---G--VECGGSNVQFAVNPVDGE------VMIIEMNPRVS  322 (1102)
T ss_pred             CCccccCCEEEEEeCCCCCHHHHHHHH-HHHHHHHHHh---C--CCcCceEEEEEEECCCCc------EEEEEecCCCC
Confidence            357789999888888777888777775 4444555544   3  4 4778888885532222      46899999996

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit

Probab=84.85  E-value=4.5  Score=43.66  Aligned_cols=66  Identities=18%  Similarity=0.226  Sum_probs=44.6

Q ss_pred             CCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        184 DKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       184 d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      ..|..+|+....+|...++++..+++. ++...+++.     +.|.|..-+.++.+..+.      .+.|+|+|+|++
T Consensus       238 p~gvh~g~~i~v~Pa~tl~~~~~~~l~-~~a~~i~~~-----Lg~~G~~~Vef~l~~~~g------~~~viEiNPR~~  303 (1050)
T TIGR01369       238 PMGVHTGDSIVVAPSQTLTDKEYQMLR-DASIKIIRE-----LGIEGGCNVQFALNPDSG------RYYVIEVNPRVS  303 (1050)
T ss_pred             CcceecCceEEEecCCCCCHHHHHHHH-HHHHHHHHH-----cCCcceeEEEEEEECCCC------cEEEEEeecCcC
Confidence            357788988888887666777666664 333344443     446788888888543322      247999999985

In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=84.65  E-value=1.3  Score=41.46  Aligned_cols=53  Identities=19%  Similarity=0.182  Sum_probs=36.2

Q ss_pred             ECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        195 YCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       195 ~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      ..|.+ ++++..+++. ++..+++++|   +  +.|++.+.++.+.        .++.|+|+|+|+|.
T Consensus       222 ~~p~~-l~~~~~~~i~-~~a~~~~~~l---~--~~G~~~ie~~~~~--------~~~~viEinpR~~~  274 (380)
T TIGR01142       222 WQPQE-MSEKALEEAQ-RIAKRITDAL---G--GYGLFGVELFVKG--------DEVIFSEVSPRPHD  274 (380)
T ss_pred             ECCCC-CCHHHHHHHH-HHHHHHHHHc---C--CcceEEEEEEEEC--------CcEEEEEeecCCCC
Confidence            44554 4666666663 5555555555   3  6899999999543        35678899999984

This enzyme is an alternative to PurN (TIGR00639)

>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]

Probab=84.14  E-value=3.8  Score=37.92  Aligned_cols=92  Identities=18%  Similarity=0.173  Sum_probs=62.2

Q ss_pred             ceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhccccCCCCceeeeccccccCCCC-cCCCcEEEe
Q psy13615         40 AEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGL-YQPGDYDLA  118 (263)
Q Consensus        40 ~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~-~~~d~i~LA  118 (263)
                      .--++|.+|+-.|.|-+       |.+.++-..-.+.+..+++++++. +.+...|.-++||-|  .|+. |.+=.++  
T Consensus        77 ~csvLVn~~DV~amGG~-------Pv~~vd~isa~s~d~~~ei~eglr-~~a~kfgvpivGGht--hpd~~y~vl~v~--  144 (324)
T COG2144          77 YCSVLVNVNDVAAMGGE-------PVGAVDAISAKSEDQAREILEGLR-KGARKFGVPIVGGHT--HPDTPYCVLDVV--  144 (324)
T ss_pred             ceeEEEeehhhhhhCCc-------ceEEEEeeecCCHHHHHHHHHHHH-HHHHhcCCceecCcc--CCCCCCceeeeE--
Confidence            45677778888888877       999999766556688999999993 334458999999933  3333 3321222  


Q ss_pred             eeeeEEeecCCcCCccccccCCcEEEEe
Q psy13615        119 GFAVGAVEKASLLPKVKDVAAGDVVIAL  146 (263)
Q Consensus       119 G~m~~~~~~~~~in~hpsl~~g~~ii~L  146 (263)
                        +.++...+.++.- -..++||.||.+
T Consensus       145 --i~gl~~~e~Ii~s-~~Ak~GD~lI~~  169 (324)
T COG2144         145 --IGGLIAEEPIITS-GTAKPGDLLIFV  169 (324)
T ss_pred             --Eeccccccccccc-CCCCcCCEEEEE
Confidence              3345554555543 456899999865

>TIGR02712 urea_carbox urea carboxylase

Probab=82.83  E-value=5.8  Score=43.46  Aligned_cols=58  Identities=10%  Similarity=0.074  Sum_probs=37.6

Q ss_pred             eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      ....+|.|..+++..+++.+..     .++ .+.+.|.|.+++.++.+..+      .++.++|+|+|++
T Consensus       236 ~vee~Pap~l~~~~~~~l~~~a-----~~l-~~aLgy~G~~~VEfild~~~------g~~y~lEVNpRlq  293 (1201)
T TIGR02712       236 VVEETPAPNLPPETRQALLAAA-----ERL-GEAVNYRSAGTVEFIYDEAR------DEFYFLEVNTRLQ  293 (1201)
T ss_pred             EEEEcCCCCCCHHHHHHHHHHH-----HHH-HHhcCccceEEEEEEEECCC------CCEEEEEEECCcC
Confidence            3345677767777766665222     222 34666889999999954321      2357889999985

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed

Probab=82.78  E-value=4.7  Score=37.42  Aligned_cols=67  Identities=21%  Similarity=0.277  Sum_probs=41.3

Q ss_pred             cCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCC
Q psy13615        181 YNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEE  260 (263)
Q Consensus       181 ~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~  260 (263)
                      |+.+....+|+.....|.+ ++++..++++ ++..++.++|   |  +.|..-+.++.+..+       .+.++|+|.++
T Consensus       236 ~d~~~ky~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aL---g--~~G~~rvDf~~~~~g-------~~~vlEiNt~P  301 (333)
T PRK01966        236 YDYEAKYLDGSAELIIPAD-LSEELTEKIR-ELAIKAFKAL---G--CSGLARVDFFLTEDG-------EIYLNEINTMP  301 (333)
T ss_pred             EcHHHccCCCCceEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--CcceEEEEEEEcCCC-------CEEEEEeeCCC
Confidence            3444444455555556664 4666666664 5555555554   3  468888888854332       24689999999


Q ss_pred             C
Q psy13615        261 G  261 (263)
Q Consensus       261 g  261 (263)
                      |
T Consensus       302 g  302 (333)
T PRK01966        302 G  302 (333)
T ss_pred             C
Confidence            8

>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=80.67  E-value=10  Score=36.40  Aligned_cols=57  Identities=19%  Similarity=0.131  Sum_probs=34.4

Q ss_pred             eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      +...+|.+.++++..+++. +   .+.+.+..-|  |.|...+.++.+..+       .+.++|+|+|++
T Consensus       238 ~~~~~p~~~l~~~~~~~l~-~---~a~~~~~~lg--~~G~~~vEf~~~~~g-------~~~viEINpR~~  294 (451)
T PRK08591        238 VLEEAPSPAITEELRRKIG-E---AAVKAAKAIG--YRGAGTIEFLYEKNG-------EFYFIEMNTRIQ  294 (451)
T ss_pred             EEEECCCCCCCHHHHHHHH-H---HHHHHHHHcC--CCceEEEEEEEcCCC-------CEEEEEEECCCC
Confidence            3445565556666655554 2   2333333334  679988999855322       256899999995

>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional

Probab=80.35  E-value=9.9  Score=37.07  Aligned_cols=59  Identities=15%  Similarity=0.095  Sum_probs=36.2

Q ss_pred             CeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        191 GMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       191 gmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      .+...+|.+..+++..+++. +....+++     .+.|+|..-+.++.+..+      ..+.++|+|+|++
T Consensus       239 ki~e~~p~~~l~~~~~~~l~-~~a~~~~~-----alg~~G~~~vEf~~~~~~------g~~~~iEvNpR~~  297 (467)
T PRK12833        239 KILEEAPSPSLTPAQRDALC-ASAVRLAR-----QVGYRGAGTLEYLFDDAR------GEFYFIEMNTRIQ  297 (467)
T ss_pred             cEEEECCCCCCCHHHHHHHH-HHHHHHHH-----HcCCcCcceEEEEEecCC------CCEEEEEEECCCC
Confidence            55666777667777766664 33323333     335678877777743211      1257899999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	263
2qk4_A	452	Human Glycinamide Ribonucleotide Synthetase Length		3e-19
2v9y_A	334	Human Aminoimidazole Ribonucleotide Synthetase Leng		1e-17
2z01_A	348	Crystal Structure Of Phosphoribosylaminoimidazole S		3e-15
1cli_A	345	X-Ray Crystal Structure Of Aminoimidazole Ribonucle		3e-15
2btu_A	346	Crystal Structure Of Phosphoribosylformylglycinamid		1e-13
3p4e_A	349	Phosphoribosylformylglycinamidine Cyclo-Ligase From		4e-13
2xd4_A	422	Nucleotide-Bound Structures Of Bacillus Subtilis Gl		2e-12
2yrw_A	451	Crystal Structure Of Gar Synthetase From Geobacillu		2e-12
2yw2_A	424	Crystal Structure Of Gar Synthetase From Aquifex Ae		5e-12
1gso_A	431	Glycinamide Ribonucleotide Synthetase (Gar-Syn) Fro		1e-10
2ip4_A	417	Crystal Structure Of Glycinamide Ribonucleotide Syn		7e-10
2xcl_A	422	Nucleotide-Bound Structures Of Bacillus Subtilis Gl		1e-09
3mjf_A	431	Phosphoribosylamine-Glycine Ligase From Yersinia Pe		4e-09
3m84_A	350	Crystal Structure Of Phosphoribosylaminoimidazole S		8e-09
1zlx_A	203	The Apo Structure Of Human Glycinamide Ribonucleoti		9e-09
1zly_A	203	The Structure Of Human Glycinamide Ribonucleotide T		1e-08
1meo_A	209	Human Glycinamide Ribonucleotide Transformylase At		1e-08
1mej_B	223	Human Glycinamide Ribonucleotide Transformylase Dom		3e-08
3lp8_A	442	Crystal Structure Of Phosphoribosylamine-Glycine Li		4e-06
1vkz_A	412	Crystal Structure Of Phosphoribosylamine--Glycine L		1e-05
3kcq_A	215	Crystal Structure Of Phosphoribosylglycinamide Form		2e-04
4ds3_A	209	Crystal Structure Of Phosphoribosylglycinamide Form		2e-04
1grc_A	212	Crystal Structure Of Glycinamide Ribonucleotide Tra		3e-04
2gar_A	212	A Ph-dependent Stablization Of An Active Site Loop		3e-04
1cdd_A	212	Structures Of Apo And Complexed Escherichia Coli Gl		3e-04
1c3e_A	209	New Insights Into Inhibitor Design From The Crystal		3e-04

>pdb|2QK4|A Chain A, Human Glycinamide Ribonucleotide Synthetase Length = 452

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 48/72 (66%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
            LCFTDGKTV  MPP+QDHKR    D GPNTGGMGAYCP   ++     +I DT+L R +
Sbjct: 222 CLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTV 281
Query: 219 KKMIAEGTPFVG 230
             M  EGTP+ G
Sbjct: 282 DGMQQEGTPYTG 293

>pdb|2V9Y|A Chain A, Human Aminoimidazole Ribonucleotide Synthetase Length = 334

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Query: 19  GTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHT--LIL 76
           G GT LK  +    N+ D +  ++V +  N       +I      P     Y     L L
Sbjct: 35  GVGTKLK--IAQLCNKHDTIGQDLVAMCVN-------DILAQGAEPLFFLDYFSCGKLDL 85
Query: 77  SNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD 136
           S +  V+  + AK    A  +  GGETAE+P +Y PG+YDLAGFAVGA+E+   LP ++ 
Sbjct: 86  SVTEAVVAGI-AKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHLER 144
Query: 137 VAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQD 176
           +  GDVV+ + SSG+HSNGFSLV       +++   P+ D
Sbjct: 145 ITEGDVVVGIASSGLHSNGFSLVRKIVAKSSLQYSSPAPD 184

>pdb|2Z01|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Synthetase From Geobacillus Kaustophilus Length = 348

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 83/158 (52%), Gaps = 26/158 (16%)
Query: 12  RVAVLISGT---GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLN-------IARNA 61
           R  VLISGT   GT LK  L    +R D +  + V +  N   V+G         IA   
Sbjct: 55  RQPVLISGTDGVGTKLK--LAFLLDRHDTIGIDCVAMCVNDIIVQGAEPLFFLDYIACGK 112
Query: 62  GIPTKVSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFA 121
            +P K++             +++ V     + A  +  GGETAE+PG+Y   +YDLAGFA
Sbjct: 113 AVPEKIAA------------IVKGVADGCVE-AGCALIGGETAEMPGMYDEDEYDLAGFA 159
Query: 122 VGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           VG  EK  L+   + + AGD ++ LPSSG+HSNG+SLV
Sbjct: 160 VGVAEKERLITG-ETIQAGDALVGLPSSGLHSNGYSLV 196

>pdb|1CLI|A Chain A, X-Ray Crystal Structure Of Aminoimidazole Ribonucleotide Synthetase (Purm), From The E. Coli Purine Biosynthetic Pathway, At 2.5 A Resolution Length = 345

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 83/154 (53%), Gaps = 12/154 (7%)
Query: 9   QRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
           Q+ R  VL+SGT G   K  L     R D +  ++V +  N   V+G         P   
Sbjct: 53  QKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAE-------PLFF 105
Query: 68  STYKHT--LILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAV 125
             Y  T  L +  +  V+  + A+    +  S  GGETAE+PG+Y   DYD+AGF VG V
Sbjct: 106 LDYYATGKLDVDTASAVISGI-AEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVV 164
Query: 126 EKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           EK+ ++   K V+ GDV+IAL SSG HSNG+SLV
Sbjct: 165 EKSEIIDGSK-VSDGDVLIALGSSGPHSNGYSLV 197

>pdb|2BTU|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine Cyclo-Ligase From Bacillus Anthracis At 2.3a Resolution. Length = 346

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 22/153 (14%)
Query: 15  VLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLN-------IARNAGIPTK 66
           VL+SGT G   K +L   +++ D +  + V +  N   V+G         IA     P+K
Sbjct: 56  VLVSGTDGVGTKLMLAFMADKHDTIGIDAVAMCVNDIVVQGAEPLFFLDYIACGKAEPSK 115
Query: 67  VSTYKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVE 126
           +          N ++ + + G + +  A     GGETAE+PG+Y   +YDLAGF VG V+
Sbjct: 116 IE---------NIVKGISE-GCRQAGCALI---GGETAEMPGMYSTEEYDLAGFTVGIVD 162
Query: 127 KASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           K  ++   K + AG V+I L SSGIHSNG+SLV
Sbjct: 163 KKKIVTGEK-IEAGHVLIGLASSGIHSNGYSLV 194

>pdb|3P4E|A Chain A, Phosphoribosylformylglycinamidine Cyclo-Ligase From Vibrio Cholerae Length = 349

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 15  VLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHT 73
           VL+SGT G   K  L     + D +  ++V +  N   V+G         P     Y  T
Sbjct: 63  VLVSGTDGVGTKLRLALDMKKHDTIGIDLVAMCVNDLIVQGAE-------PLFFLDYYAT 115
Query: 74  --LILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLL 131
             L +  + +V+  + A     A  +  GGETAE+PG+Y+  DYD+AGF VG VEK  ++
Sbjct: 116 GKLDVDTAAEVISGI-ADGCLQAGCALIGGETAEMPGMYEGEDYDVAGFCVGVVEKEEII 174
Query: 132 PKVKDVAAGDVVIALPSSGIHSNGFSLV 159
              K V  GD +IA+ SSG HSNG+SLV
Sbjct: 175 DGSK-VQVGDALIAVGSSGPHSNGYSLV 201

>pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis Glycinamide Ribonucleotide Synthetase Length = 422

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 156 FSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILM 215
           FSL + F  G+ V  M  +QDHKR ++ DKGPNTGGMGAY P   ++E   +   +TI+ 
Sbjct: 193 FSL-MAFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVK 251
Query: 216 RVIKKMIAEGTPFVG 230
              K M+ EG  F G
Sbjct: 252 PAAKAMVQEGRSFTG 266

>pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus Kaustophilus Length = 451

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 156 FSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILM 215
           FS  + F +G+ V  +  +QDHKR Y+ D+GPNTGGMGAY P   +++       + IL 
Sbjct: 214 FSF-MAFVNGEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILR 272
Query: 216 RVIKKMIAEGTPFVG 230
              K + AEG PF+G
Sbjct: 273 PAAKALAAEGRPFLG 287

>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus In Complex With Atp Length = 424

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 171 MPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVG 230
           +P SQDHKR  + DKGPNTGGMGAY P  ++ E  +K I + I+ RVIK +  EG  + G
Sbjct: 207 LPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRG 266

>pdb|1GSO|A Chain A, Glycinamide Ribonucleotide Synthetase (Gar-Syn) From E. Coli Length = 431

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 41/71 (57%)
Query: 160 LCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219
           +   DG+ V  M  SQDHKR  + D GPNTGGMGAY P  ++T+   +   + I+   +K
Sbjct: 200 IVMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVK 259
Query: 220 KMIAEGTPFVG 230
            M AEG  + G
Sbjct: 260 GMAAEGNTYTG 270

>pdb|2IP4|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Synthetase From Thermus Thermophilus Hb8 Length = 417

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
           VL  TDG+T+  + PSQDHKR  + D+GP TGG GA  P     EA  + + + IL  ++
Sbjct: 190 VLALTDGETILPLLPSQDHKRLLDGDQGPXTGGXGAVAPYPX-DEATLRRVEEEILGPLV 248
Query: 219 KKMIAEGTPFVG 230
           + + AEG  + G
Sbjct: 249 RGLRAEGVVYRG 260

>pdb|2XCL|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis Glycinamide Ribonucleotide Synthetase Length = 422

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 156 FSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILM 215
           FSL   F  G+ V     +QDHKR ++ DKGPNTGG GAY P   ++E   +   +TI+ 
Sbjct: 193 FSLX-AFVKGEKVYPXVIAQDHKRAFDGDKGPNTGGXGAYSPVPQISEETVRHAVETIVK 251
Query: 216 RVIKKMIAEGTPFVG 230
              K  + EG  F G
Sbjct: 252 PAAKAXVQEGRSFTG 266

>pdb|3MJF|A Chain A, Phosphoribosylamine-Glycine Ligase From Yersinia Pestis Length = 431

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 160 LCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK 219
           +   DG+ V     SQDHKR  + D GPNTGG GAY P  ++T+   + + D ++   ++
Sbjct: 201 IVXVDGENVLPXATSQDHKRVGDGDTGPNTGGXGAYSPAPVVTDDVHQRVXDQVIWPTVR 260
Query: 220 KMIAEGTPFVG 230
              AEG  + G
Sbjct: 261 GXAAEGNIYTG 271

>pdb|3M84|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole Synthetase From Francisella Tularensis Length = 350

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSL 158
           GGETAE PG+YQ G+ D  G   G V++  ++   +++  GD+V  L SSG+H+NG+S 
Sbjct: 142 GGETAEXPGVYQAGEIDXVGVITGIVDRKRIING-ENIKEGDIVFGLSSSGLHTNGYSF 199

>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide Transformylase Length = 203

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
          RVAVLISGTG+NL++L+++T  R     A+I +V+SNK  V GL+ A  AGIPT+V  +K
Sbjct: 2  RVAVLISGTGSNLQALIDST--REPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHK 59

>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide Transformylase In Complex With Alpha,beta-n- (hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8, Dideazafolate Length = 203

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
          RVAVLISGTG+NL++L+++T  R     A+I +V+SNK  V GL+ A  AGIPT+V  +K
Sbjct: 2  RVAVLISGTGSNLQALIDST--REPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHK 59

>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2 Length = 209

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 44/60 (73%), Gaps = 2/60 (3%)
Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
          RVAVLISGTG+NL++L+++T  R     A+I +V+SNK  V GL+ A  AGIPT+V  +K
Sbjct: 2  RVAVLISGTGSNLQALIDST--REPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHK 59

>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At Ph 8.5 Length = 223

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVST 69
          R  VAVLISGTG+NL++L+++T  R     A+I +V+SNK  V GL+ A  AGIPT+V  
Sbjct: 11 RILVAVLISGTGSNLQALIDST--REPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVIN 68
Query: 70 YK 71
          +K
Sbjct: 69 HK 70

>pdb|3LP8|A Chain A, Crystal Structure Of Phosphoribosylamine-Glycine Ligase From Ehrlichia Chaffeensis Length = 442

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 156 FSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILM 215
           F+LV    DG    ++  +QD+K   +N+KGPNTGGMG+Y   +I+T+  +  I   I+ 
Sbjct: 217 FTLV----DGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIY 272
Query: 216 RVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNR-REKEDNPEEGDP 263
             IK M      F          G + A +   +N  +  E N   GDP
Sbjct: 273 PTIKAMFNMNIQF---------RGLLFAGIIIKKNEPKLLEYNVRFGDP 312

>pdb|1VKZ|A Chain A, Crystal Structure Of Phosphoribosylamine--Glycine Ligase (Tm1250) From Thermotoga Maritima At 2.30 A Resolution Length = 412

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKK--EIHDTILMRVIKK 220
            +G+   ++P  +D+KR  + D+GPNTGG G++ P +I ++  KK  E+ D  L  V K+
Sbjct: 203 VNGRNFVILPFVRDYKRLXDGDRGPNTGGXGSWGPVEIPSDTIKKIEELFDKTLWGVEKE 262
Query: 221 MIA 223
             A
Sbjct: 263 GYA 265

>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Anaplasma Phagocytophilum Length = 215

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 7  MVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66
          M +  RV VLISG G+NL++L +A S         I  V+SN     GL IA++ GIPT 
Sbjct: 5  MKKELRVGVLISGRGSNLEALAKAFSTEES--SVVISCVISNNAEARGLLIAQSYGIPTF 62
Query: 67 V 67
          V
Sbjct: 63 V 63

>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Brucella Melitensis Length = 209

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 8  VQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
          ++R RV + ISG G+N+++L+ A   ++    AEIV V S+K    GL  A  AGI T+V
Sbjct: 5  MKRNRVVIFISGGGSNMEALIRAA--QAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQV 62
Query: 68 STYK 71
             K
Sbjct: 63 FKRK 66

>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase From Escherichia Coli At 3.0 Angstroms Resolution: A Target Enzyme For Chemotherapy Length = 212

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72
          + VLISG G+NL+++++A   +++ ++  +  V SNK +  GL  AR AGI T      H
Sbjct: 3  IVVLISGNGSNLQAIIDAC--KTNKIKGTVRAVFSNKADAFGLERARQAGIAT------H 54
Query: 73 TLILS 77
          TLI S
Sbjct: 55 TLIAS 59

>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop Observed From Low And High Ph Crystal Structures Of Mutant Monomeric Glycinamide Ribonucleotide Transformylase Length = 212

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72
          + VLISG G+NL+++++A   +++ ++  +  V SNK +  GL  AR AGI T      H
Sbjct: 3  IVVLISGNGSNLQAIIDAC--KTNKIKGTVRAVFSNKADAFGLERARQAGIAT------H 54
Query: 73 TLILS 77
          TLI S
Sbjct: 55 TLIAS 59

>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli Glycinamide Ribonucleotide Transformylase Length = 212

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72
          + VLISG G+NL+++++A   +++ ++  +  V SNK +  GL  AR AGI T      H
Sbjct: 3  IVVLISGNGSNLQAIIDAC--KTNKIKGTVRAVFSNKADAFGLERARQAGIAT------H 54
Query: 73 TLILS 77
          TLI S
Sbjct: 55 TLIAS 59

>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal Structure And Nmr Studies Of E. Coli Gar Transformylate In Complex With Beta-Gar And 10-Formyl-5,8,10-Trideazafolic Acid. Length = 209

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKH 72
          + VLISG G+NL+++++A   +++ ++  +  V SNK +  GL  AR AGI T      H
Sbjct: 3  IVVLISGNGSNLQAIIDAC--KTNKIKGTVRAVFSNKADAFGLERARQAGIAT------H 54
Query: 73 TLILS 77
          TLI S
Sbjct: 55 TLIAS 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
2v9y_A	334	Phosphoribosylformylglycinamidine cyclo-ligase; mu	1e-35
2btu_A	346	Phosphoribosyl-aminoimidazole synthetase; synthase	6e-34
3p4e_A	349	Phosphoribosylformylglycinamidine cyclo-ligase; st	9e-34
3m84_A	350	Phosphoribosylformylglycinamidine cyclo-ligase; al	9e-34
2z01_A	348	Phosphoribosylformylglycinamidine cyclo-ligase; al	2e-33
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	4e-32
2xcl_A	422	Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-	1e-30
2yrx_A	451	Phosphoribosylglycinamide synthetase; glycinamide	1e-30
2yw2_A	424	Phosphoribosylamine--glycine ligase; glycinamide r	2e-30
3mjf_A	431	Phosphoribosylamine--glycine ligase; structural ge	2e-30
3lp8_A	442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	1e-29
2ip4_A	417	PURD, phosphoribosylamine--glycine ligase; GAR syn	5e-29
1vkz_A	412	Phosphoribosylamine--glycine ligase; TM1250, struc	7e-28
4ds3_A	209	Phosphoribosylglycinamide formyltransferase; struc	2e-19
3kcq_A	215	Phosphoribosylglycinamide formyltransferase; struc	5e-19
3kiz_A	394	Phosphoribosylformylglycinamidine cyclo-ligase; ST	7e-19
1meo_A	209	Phosophoribosylglycinamide formyltransferase; puri	1e-18
3tqr_A	215	Phosphoribosylglycinamide formyltransferase; purin	1e-18
3p9x_A	211	Phosphoribosylglycinamide formyltransferase; struc	1e-18
2ywr_A	216	Phosphoribosylglycinamide formyltransferase; rossm	2e-18
3av3_A	212	Phosphoribosylglycinamide formyltransferase; struc	3e-18
1jkx_A	212	GART;, phosphoribosylglycinamide formyltransferase	4e-18
3auf_A	229	Glycinamide ribonucleotide transformylase 1; struc	5e-18
3da8_A	215	Probable 5'-phosphoribosylglycinamide formyltransf	5e-17
3mdo_A	389	Putative phosphoribosylformylglycinamidine cyclo-;	1e-16
4dim_A	403	Phosphoribosylglycinamide synthetase; structural g	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens} Length = 334

 Score =  128 bits (325), Expect = 1e-35
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+P +Y PG+YDLAGFAVGA+E+   LP ++ +  GDVV+ + SSG+HSNGFSLV
Sbjct: 108 GGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHLERITEGDVVVGIASSGLHSNGFSLV 167

>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis} Length = 346

 Score =  124 bits (314), Expect = 6e-34
 Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG+Y   +YDLAGF VG V+K  ++   + + AG V+I L SSGIHSNG+SLV
Sbjct: 136 GGETAEMPGMYSTEEYDLAGFTVGIVDKKKIVTG-EKIEAGHVLIGLASSGIHSNGYSLV 194

>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A Length = 349

 Score =  124 bits (313), Expect = 9e-34
 Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG+Y+  DYD+AGF VG VEK  ++     V  GD +IA+ SSG HSNG+SLV
Sbjct: 143 GGETAEMPGMYEGEDYDVAGFCVGVVEKEEIIDG-SKVQVGDALIAVGSSGPHSNGYSLV 201

>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A* Length = 350

 Score =  124 bits (313), Expect = 9e-34
 Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG+YQ G+ D+ G   G V++  ++   +++  GD+V  L SSG+H+NG+S  
Sbjct: 142 GGETAEMPGVYQAGEIDMVGVITGIVDRKRIING-ENIKEGDIVFGLSSSGLHTNGYSFA 200

>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus} Length = 348

 Score =  123 bits (311), Expect = 2e-33
 Identities = 36/60 (60%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV 159
           GGETAE+PG+Y   +YDLAGFAVG  EK  L+   + + AGD ++ LPSSG+HSNG+SLV
Sbjct: 138 GGETAEMPGMYDEDEYDLAGFAVGVAEKERLITG-ETIQAGDALVGLPSSGLHSNGYSLV 196

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens} Length = 452

 Score =  121 bits (306), Expect = 4e-32
 Identities = 41/72 (56%), Positives = 48/72 (66%)

Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
            LCFTDGKTV  MPP+QDHKR    D GPNTGGMGAYCP   ++     +I DT+L R +
Sbjct: 222 CLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTV 281

Query: 219 KKMIAEGTPFVG 230
             M  EGTP+ G
Sbjct: 282 DGMQQEGTPYTG 293

>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* Length = 422

 Score =  117 bits (295), Expect = 1e-30
 Identities = 31/72 (43%), Positives = 43/72 (59%)

Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
           ++ F  G+ V  M  +QDHKR ++ DKGPNTGGMGAY P   ++E   +   +TI+    
Sbjct: 195 LMAFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAA 254

Query: 219 KKMIAEGTPFVG 230
           K M+ EG  F G
Sbjct: 255 KAMVQEGRSFTG 266

>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Length = 451

 Score =  117 bits (295), Expect = 1e-30
 Identities = 30/72 (41%), Positives = 43/72 (59%)

Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
            + F +G+ V  +  +QDHKR Y+ D+GPNTGGMGAY P   +++       + IL    
Sbjct: 216 FMAFVNGEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAA 275

Query: 219 KKMIAEGTPFVG 230
           K + AEG PF+G
Sbjct: 276 KALAAEGRPFLG 287

>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Length = 424

 Score =  116 bits (294), Expect = 2e-30
 Identities = 32/72 (44%), Positives = 43/72 (59%)

Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
            +   +G     +P SQDHKR  + DKGPNTGGMGAY P  ++ E  +K I + I+ RVI
Sbjct: 195 YIVMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVI 254

Query: 219 KKMIAEGTPFVG 230
           K +  EG  + G
Sbjct: 255 KGLKEEGIYYRG 266

>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Length = 431

 Score =  116 bits (294), Expect = 2e-30
 Identities = 29/72 (40%), Positives = 42/72 (58%)

Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
            +   DG+ V  M  SQDHKR  + D GPNTGGMGAY P  ++T+   + + D ++   +
Sbjct: 200 FIVMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTV 259

Query: 219 KKMIAEGTPFVG 230
           + M AEG  + G
Sbjct: 260 RGMAAEGNIYTG 271

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Length = 442

 Score =  114 bits (288), Expect = 1e-29
 Identities = 25/72 (34%), Positives = 37/72 (51%)

Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
                DG    ++  +QD+K   +N+KGPNTGGMG+Y   +I+T+  +  I   I+   I
Sbjct: 216 FFTLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTI 275

Query: 219 KKMIAEGTPFVG 230
           K M      F G
Sbjct: 276 KAMFNMNIQFRG 287

>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus} Length = 417

 Score =  112 bits (283), Expect = 5e-29
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
           VL  TDG+T+  + PSQDHKR  + D+GP TGGMGA  P  +      + + + IL  ++
Sbjct: 190 VLALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYPMDEATL-RRVEEEILGPLV 248

Query: 219 KKMIAEGTPFVG 230
           + + AEG  + G
Sbjct: 249 RGLRAEGVVYRG 260

>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 412

 Score =  109 bits (275), Expect = 7e-28
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)

Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
            +   +G+   ++P  +D+KR  + D+GPNTGGMG++ P +I ++  KK   + +  + +
Sbjct: 199 AMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTIKKI--EELFDKTL 256

Query: 219 KKMIAEGTPFVG 230
             +  EG  + G
Sbjct: 257 WGVEKEGYAYRG 268

>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Length = 209

 Score = 82.5 bits (205), Expect = 2e-19
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 8  VQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
          ++R RV + ISG G+N+++L+ A   ++    AEIV V S+K    GL  A  AGI T+V
Sbjct: 5  MKRNRVVIFISGGGSNMEALIRAA--QAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQV 62

>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} Length = 215

 Score = 81.8 bits (203), Expect = 5e-19
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 7  MVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK 66
          M +  RV VLISG G+NL++L +A    ++     I  V+SN     GL IA++ GIPT 
Sbjct: 5  MKKELRVGVLISGRGSNLEALAKAF--STEESSVVISCVISNNAEARGLLIAQSYGIPTF 62

Query: 67 VSTYK 71
          V   K
Sbjct: 63 VVKRK 67

>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406} Length = 394

 Score = 84.0 bits (208), Expect = 7e-19
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 14/71 (19%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPS----------- 148
           GGETA++  L +    D        +++  ++   +++ AG+V++   S           
Sbjct: 146 GGETADVGDLVRTIIVDSTV--TCRMKRQDVISN-ENIKAGNVIVGFASYGQTSYETEYN 202

Query: 149 SGIHSNGFSLV 159
            G+ SNG +  
Sbjct: 203 GGMGSNGLTSA 213

>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209

 Score = 81.0 bits (201), Expect = 1e-18
 Identities = 31/56 (55%), Positives = 42/56 (75%), Gaps = 2/56 (3%)

Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
          RVAVLISGTG+NL++L+++T  R     A+I +V+SNK  V GL+ A  AGIPT+V
Sbjct: 2  RVAVLISGTGSNLQALIDST--REPNSSAQIDIVISNKAAVAGLDKAERAGIPTRV 55

>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} Length = 215

 Score = 81.0 bits (201), Expect = 1e-18
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 7  MVQRK-RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPT 65
          M +    + VLISG GTNL++++ A          EI  V+SN+ +  GL  A+ A IPT
Sbjct: 1  MNREPLPIVVLISGNGTNLQAIIGAIQKGLA---IEIRAVISNRADAYGLKRAQQADIPT 57

Query: 66 KV 67
           +
Sbjct: 58 HI 59

>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Length = 211

 Score = 80.6 bits (200), Expect = 1e-18
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70
          KRVA+  SG+GTN ++++++   ++  +  E+ L++++K   + +   +   IP      
Sbjct: 3  KRVAIFASGSGTNAEAIIQSQ--KAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDP 60

Query: 71 K 71
          K
Sbjct: 61 K 61

>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216

 Score = 79.9 bits (198), Expect = 2e-18
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
           ++ VL+SG G+NL+++++A    S  + A I LV+S+      +   +   +  KV
Sbjct: 2  LKIGVLVSGRGSNLQAIIDAI--ESGKVNASIELVISDNPKAYAIERCKKHNVECKV 56

>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Length = 212

 Score = 79.5 bits (197), Expect = 3e-18
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTY 70
          KR+AV  SG+GTN +++++A   +   + A + L+V ++   + +  A    +P  V + 
Sbjct: 4  KRLAVFASGSGTNFQAIVDAA--KRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSP 61

Query: 71 K 71
          K
Sbjct: 62 K 62

>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212

 Score = 79.5 bits (197), Expect = 4e-18
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
           + VLISG G+NL+++++A   +++ ++  +  V SNK +  GL  AR AGI T  
Sbjct: 2  NIVVLISGNGSNLQAIIDAC--KTNKIKGTVRAVFSNKADAFGLERARQAGIATHT 55

>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Length = 229

 Score = 79.5 bits (197), Expect = 5e-18
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 1  MVVKTRMVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARN 60
          +  +  M    R+ VLISG+GTNL+++L+    R   +   + +V+S++ +  GL  AR 
Sbjct: 16 LYFQGHM---IRIGVLISGSGTNLQAILDGC--REGRIPGRVAVVISDRADAYGLERARR 70

Query: 61 AGIPTKV 67
          AG+    
Sbjct: 71 AGVDALH 77

>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215

 Score = 76.4 bits (189), Expect = 5e-17
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 9  QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV 67
             R+ VL SGTG+ L+SLL+A         A +V V  ++       IA  A +P   
Sbjct: 11 APARLVVLASGTGSLLRSLLDAAVGDYP---ARVVAVGVDR-ECRAAEIAAEASVPVFT 65

>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis} Length = 389

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 14/71 (19%)

Query: 100 GGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSG--------- 150
           GGETA++  L +    D        ++++ ++   K++  GDV++ L SSG         
Sbjct: 145 GGETADVGDLVRTIIVDSTV--TCRMKRSDVIDN-KNIQGGDVIVGLASSGQATYEKEYN 201

Query: 151 --IHSNGFSLV 159
             + SNG +  
Sbjct: 202 GGMGSNGLTSA 212

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 19/85 (22%)

Query: 159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI 218
              F     V  + P  D               +G Y P D + +   ++    +  + I
Sbjct: 198 AQAFVYKNDVLFVMPHGDETYM-----SHTAVPVGHYVPLD-VKDDIIEKTKTEVK-KAI 250

Query: 219 KK------------MIAEGTPFVGE 231
           K             ++ +   ++ E
Sbjct: 251 KALGLNNCAVNVDMILKDNEVYIIE 275

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 43/273 (15%), Positives = 78/273 (28%), Gaps = 86/273 (31%)

Query: 7   MVQRKRVAVLISGTGTNLKSLLEATSN---RSDIMRAEIVLVVSNKHNVEGLNIARNAGI 63
           M+Q+     L+     N  S  + +SN   R   ++AE+  ++ +K     L +  N   
Sbjct: 201 MLQK-----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--- 252

Query: 64  PTKVSTYKH---------TLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGD 114
              V   K           L+ +   QV   + A  +     S D         L     
Sbjct: 253 ---VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT--THISLDH----HSMTLTPD-- 301

Query: 115 YDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPS 174
                      E  SLL K  D    D    LP   + +N   L +     ++++    +
Sbjct: 302 -----------EVKSLLLKYLDCRPQD----LPREVLTTNPRRLSII---AESIRDGLAT 343

Query: 175 QDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKR 234
            D+ +  N DK                            L  +I+  +    P   E ++
Sbjct: 344 WDNWKHVNCDK----------------------------LTTIIESSLNVLEP--AEYRK 373

Query: 235 G------FTEGT-VTAKVFSSRNRREKEDNPEE 260
                  F     +   + S       + +   
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
4ds3_A	209	Phosphoribosylglycinamide formyltransferase; struc	100.0
3p9x_A	211	Phosphoribosylglycinamide formyltransferase; struc	99.98
3tqr_A	215	Phosphoribosylglycinamide formyltransferase; purin	99.97
3kcq_A	215	Phosphoribosylglycinamide formyltransferase; struc	99.97
3da8_A	215	Probable 5'-phosphoribosylglycinamide formyltransf	99.97
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	99.97
1jkx_A	212	GART;, phosphoribosylglycinamide formyltransferase	99.97
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	99.97
1meo_A	209	Phosophoribosylglycinamide formyltransferase; puri	99.97
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	99.96
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	99.96
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	99.96
3av3_A	212	Phosphoribosylglycinamide formyltransferase; struc	99.96
2ywr_A	216	Phosphoribosylglycinamide formyltransferase; rossm	99.96
3auf_A	229	Glycinamide ribonucleotide transformylase 1; struc	99.96
2bln_A	305	Protein YFBG; transferase, formyltransferase, L-AR	99.83
1fmt_A	314	Methionyl-tRNA FMet formyltransferase; initiator t	99.82
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.81
3q0i_A	318	Methionyl-tRNA formyltransferase; structural genom	99.79
2bw0_A	329	10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase	99.77
3rfo_A	317	Methionyl-tRNA formyltransferase; structural genom	99.72
3tqq_A	314	Methionyl-tRNA formyltransferase; protein synthesi	99.72
3mjf_A	431	Phosphoribosylamine--glycine ligase; structural ge	99.55
3lp8_A	442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	99.51
3kiz_A	394	Phosphoribosylformylglycinamidine cyclo-ligase; ST	99.3
3mdo_A	389	Putative phosphoribosylformylglycinamidine cyclo-;	99.29
1vkz_A	412	Phosphoribosylamine--glycine ligase; TM1250, struc	99.1
2yw2_A	424	Phosphoribosylamine--glycine ligase; glycinamide r	99.05
2xcl_A	422	Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-	99.05
2yrx_A	451	Phosphoribosylglycinamide synthetase; glycinamide	99.04
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	99.03
2ip4_A	417	PURD, phosphoribosylamine--glycine ligase; GAR syn	99.03
1zgh_A	260	Methionyl-tRNA formyltransferase; southeast collab	98.93
3p4e_A	349	Phosphoribosylformylglycinamidine cyclo-ligase; st	98.8
3m84_A	350	Phosphoribosylformylglycinamidine cyclo-ligase; al	98.78
2btu_A	346	Phosphoribosyl-aminoimidazole synthetase; synthase	98.35
2z01_A	348	Phosphoribosylformylglycinamidine cyclo-ligase; al	98.27
2v9y_A	334	Phosphoribosylformylglycinamidine cyclo-ligase; mu	98.22
3vti_C	314	Hydrogenase maturation factor; transferase, carbam	97.46
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	97.39
3aw8_A	369	PURK, phosphoribosylaminoimidazole carboxylase, AT	97.31
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.13
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	97.09
3vot_A	425	L-amino acid ligase, BL00235; ATP-grAsp motif, ATP	96.85
2z1u_A	343	Hydrogenase expression/formation protein HYPE; alp	96.84
2rb9_A	334	HYPE protein; hydrogenase maturation, dimer, enzym	96.7
3mcq_A	319	Thiamine-monophosphate kinase; structural genomics	96.55
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	96.33
3c9u_A	342	Thiamine monophosphate kinase; beta barrel, alpha-	96.31
2z04_A	365	Phosphoribosylaminoimidazole carboxylase ATPase su	96.02
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	95.94
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.89
2z1e_A	338	Hydrogenase expression/formation protein HYPE; [NI	95.41
1iow_A	306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	94.93
3u0o_A	347	Selenide, water dikinase; ATP binding protein, sel	94.89
3r5x_A	307	D-alanine--D-alanine ligase; alpha-beta structure,	94.82
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	94.61
2yyd_A	345	Selenide, water dikinase; FULL-length selenophosph	94.32
3se7_A	346	VANA; alpha-beta structure, D-alanine-D-lactate li	94.17
1e4e_A	343	Vancomycin/teicoplanin A-type resistance protein;	94.07
2pvp_A	367	D-alanine-D-alanine ligase; 2.40A {Helicobacter py	94.03
2r85_A	334	PURP protein PF1517; ATP-grAsp superfamily, unknow	93.95
3k3p_A	383	D-alanine--D-alanine ligase; D-alanyl-alanine synt	93.94
4dim_A	403	Phosphoribosylglycinamide synthetase; structural g	93.76
2yxz_A	311	Thiamin-monophosphate kinase; alpha/beta structure	93.64
1w96_A	554	ACC, acetyl-coenzyme A carboxylase; ligase, obesit	93.24
2vpq_A	451	Acetyl-COA carboxylase; bacteria, ATP-grAsp domain	92.88
1ulz_A	451	Pyruvate carboxylase N-terminal domain; biotin car	92.85
2w70_A	449	Biotin carboxylase; ligase, ATP-binding, fatty aci	92.76
2i87_A	364	D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco	92.51
3tqt_A	372	D-alanine--D-alanine ligase; cell envelope; 1.88A	92.44
1ehi_A	377	LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g	92.18
3e5n_A	386	D-alanine-D-alanine ligase A; bacterial blight; 2.	92.04
3i12_A	364	D-alanine-D-alanine ligase A; D-alanyl-alanine syn	91.92
3lwb_A	373	D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan	91.9
3ac6_A	725	Phosphoribosylformylglycinamidine synthase 2; puri	91.75
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.54
1vk3_A	615	Phosphoribosylformylglycinamidine synthase II; TM1	91.44
3eth_A	355	Phosphoribosylaminoimidazole carboxylase ATPase su	91.27
3fd5_A	394	Selenide, water dikinase 1; selenophosphate synthe	91.01
3rjz_A	237	N-type ATP pyrophosphatase superfamily; structural	90.91
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	90.66
3ac6_A	725	Phosphoribosylformylglycinamidine synthase 2; puri	90.33
2dzd_A	461	Pyruvate carboxylase; biotin carboxylase, ligase;	90.1
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	88.01
3k32_A	203	Uncharacterized protein MJ0690; predicted subunit	86.51
4eg0_A	317	D-alanine--D-alanine ligase; structural genomics,	86.41
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	86.25
3vmm_A	474	Alanine-anticapsin ligase BACD; ATP-grAsp domain,	84.58
2fb9_A	322	D-alanine:D-alanine ligase; 1.90A {Thermus caldoph	84.41
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	83.99
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	83.0
3glk_A	540	Acetyl-COA carboxylase 2; ATP binding, alternative	82.39
3jrx_A	587	Acetyl-COA carboxylase 2; BC domain, soraphen A, a	81.9
3ouz_A	446	Biotin carboxylase; structural genomics, center fo	81.86
4fu0_A	357	D-alanine--D-alanine ligase 7; vancomycin resistan	81.63

>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}

Probab=100.00  E-value=3.3e-33  Score=242.79  Aligned_cols=177  Identities=25%  Similarity=0.356  Sum_probs=145.0

Q ss_pred             ccCCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHH
Q psy13615          7 MVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQK   85 (263)
Q Consensus         7 m~~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~   85 (263)
                      |. ++||+||+||+||||++|+++  .+.+.++++|++|+||+++++++++|+++|||+++++++++.++ ++++++++.
T Consensus         5 m~-~~ri~vl~SG~gsnl~all~~--~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~   81 (209)
T 4ds3_A            5 MK-RNRVVIFISGGGSNMEALIRA--AQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKRKDFASKEAHEDAILAA   81 (209)
T ss_dssp             -C-CEEEEEEESSCCHHHHHHHHH--HTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHH
T ss_pred             CC-CccEEEEEECCcHHHHHHHHH--HHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEeCccccCCHHHHHHHHHHH
Confidence            44 789999999999999999976  45567789999999999999999999999999999999888665 778888888


Q ss_pred             hccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccce
Q psy13615         86 VGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSL  158 (263)
Q Consensus        86 l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl  158 (263)
                      +  ++                   +++|++++||||+.+    ++  +.+++|+|||+        ||+ .|.+..    
T Consensus        82 l--~~-------------------~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----  128 (209)
T 4ds3_A           82 L--DV-------------------LKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSL--------LPLFPGLHTH----  128 (209)
T ss_dssp             H--HH-------------------HCCSEEEESSCCSCCCHHHHGGGTTCEEEEESSC--------TTSSCSSCHH----
T ss_pred             H--Hh-------------------cCCCEEEEeccccCcCHHHHhhccCCeEEECCcc--------ccCCCChhHH----
Confidence            8  77                   899999999999843    33  35799999999        998 565543    


Q ss_pred             eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        159 VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       159 ~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                      .|++.+|  .+.+|+| .|    ++|+|+|||+|++|..+|+.++|+.+++.+|       +|+++++.+.+...
T Consensus       129 ~~Ai~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~~~~ll~~~l~~~~~g~~  196 (209)
T 4ds3_A          129 QRALDAG--MKLAGCT-VH----LVTEGMDEGPILAQAAVPVLDGDTAETLAARVLKAEHRLYPLALQKFAAGEK  196 (209)
T ss_dssp             HHHHHTT--CSEEEEE-EE----ECCC--CCCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHcC--CCeEEEE-EE----EEcCCCCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3455554  5669999 47    9999999999999999999988888877765       58888988865443

>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}

Probab=99.98  E-value=5.5e-33  Score=241.57  Aligned_cols=173  Identities=22%  Similarity=0.309  Sum_probs=145.4

Q ss_pred             CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcc
Q psy13615         10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGA   88 (263)
Q Consensus        10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~   88 (263)
                      |+||+||+||+||||++|+++  ++.+.++++|++|+||+++++++++|+++|||+++++++++.++ +++.++++.+  
T Consensus         2 m~riavl~Sg~Gsnl~ali~~--~~~~~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l--   77 (211)
T 3p9x_A            2 MKRVAIFASGSGTNAEAIIQS--QKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQL--   77 (211)
T ss_dssp             -CEEEEECCTTCHHHHHHHHH--HHTTCCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCGGGSSSHHHHHHHHHHHH--
T ss_pred             CCEEEEEEeCCchHHHHHHHH--HHcCCCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeChhhcCchhhhHHHHHHHH--
Confidence            469999999999999999976  46677889999999999999999999999999999998887665 7788888888  


Q ss_pred             ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615         89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC  161 (263)
Q Consensus        89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a  161 (263)
                      ++                   +++|++++||||+.+    ++  +.+++|+|||+        ||+ .|.+..    .|+
T Consensus        78 ~~-------------------~~~Dliv~agy~~Il~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~A  126 (211)
T 3p9x_A           78 KE-------------------KQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPSL--------LPAFPGLHAI----EQA  126 (211)
T ss_dssp             HH-------------------TTCCEEEESSCCSCCCHHHHHHHTTSEEEEESSC--------TTSSCSSCHH----HHH
T ss_pred             Hh-------------------cCCCEEEEeCchhhcCHHHHhhccCCeEEECCcc--------CCCCCCccHH----HHH
Confidence            77                   899999999999843    22  45699999999        998 555443    345


Q ss_pred             EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhc
Q psy13615        162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAE  224 (263)
Q Consensus       162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~e  224 (263)
                      +.+|  .+.+|+| .|    ++|+|.|||+|++|..+|+.++|+.+++.+|       +|+++++.+.+.
T Consensus       127 i~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g  189 (211)
T 3p9x_A          127 IRAN--VKVTGVT-IH----YVDEGMDTGPIIAQEAVSIEEEDTLETLTTKIQAVEHRLYPATLHKLLSK  189 (211)
T ss_dssp             HHTT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHcC--CCeEEEE-EE----EEcCCCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            5555  5669999 47    9999999999999999999988888887765       588888888543

>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0

Probab=99.97  E-value=1.4e-32  Score=239.79  Aligned_cols=175  Identities=23%  Similarity=0.299  Sum_probs=145.7

Q ss_pred             CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcc
Q psy13615         10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGA   88 (263)
Q Consensus        10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~   88 (263)
                      ++||+||+||+||||++|+++  ++.+ ++++|++|+||+++++++++|+++|||+++++++++.++ ++++++++.+  
T Consensus         5 ~~riavl~SG~Gsnl~all~~--~~~~-~~~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l--   79 (215)
T 3tqr_A            5 PLPIVVLISGNGTNLQAIIGA--IQKG-LAIEIRAVISNRADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTI--   79 (215)
T ss_dssp             CEEEEEEESSCCHHHHHHHHH--HHTT-CSEEEEEEEESCTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH--
T ss_pred             CcEEEEEEeCCcHHHHHHHHH--HHcC-CCCEEEEEEeCCcchHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHHH--
Confidence            568999999999999999976  4556 789999999999999999999999999999999888766 7788888888  


Q ss_pred             ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615         89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC  161 (263)
Q Consensus        89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a  161 (263)
                      ++                   +++|++++||||+.+    ++  +.+++|+|||+        ||+ .|.+..    .|+
T Consensus        80 ~~-------------------~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~A  128 (215)
T 3tqr_A           80 DH-------------------YDPKLIVLAGFMRKLGKAFVSHYSGRMINIHPSL--------LPKYTGLNTH----ERA  128 (215)
T ss_dssp             HT-------------------TCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSS--------TTTTCSSCHH----HHH
T ss_pred             Hh-------------------cCCCEEEEccchhhCCHHHHhhccCCeEEeCccc--------CCCCCChhHH----HHH
Confidence            77                   999999999999843    22  35799999999        998 555543    345


Q ss_pred             EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCCC
Q psy13615        162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGTP  227 (263)
Q Consensus       162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~~  227 (263)
                      +.+|  .+.+|+| .|    ++|+|.|||+|++|..+|+.++|+.+++.+|       +|+++++.+.+....
T Consensus       129 i~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~  194 (215)
T 3tqr_A          129 LAAG--ETEHGVS-VH----YVTEDLDAGPLICQARLSITPQDTPETLKTRVHALEHIIYPEVLSWFAAGRLN  194 (215)
T ss_dssp             HHTT--CSEEEEE-EE----ECC-CTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHcC--CCeEEEE-EE----EEcCCCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeE
Confidence            5555  5669999 47    9999999999999999999988888887765       588999998655443

>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0

Probab=99.97  E-value=6.2e-32  Score=235.66  Aligned_cols=173  Identities=26%  Similarity=0.311  Sum_probs=141.0

Q ss_pred             ccCCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615          7 MVQRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV   86 (263)
Q Consensus         7 m~~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l   86 (263)
                      |..++||+||+||+|||+++|+++  .+.+.++++|++|+||+++++++++|+++|||+++++++++.+    +++++.+
T Consensus         5 ~~~~~ri~vl~SG~gsnl~all~~--~~~~~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~~~~~~----~~~~~~L   78 (215)
T 3kcq_A            5 MKKELRVGVLISGRGSNLEALAKA--FSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKRKPLDI----EHISTVL   78 (215)
T ss_dssp             --CCEEEEEEESSCCHHHHHHHHH--TCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCBTTBCH----HHHHHHH
T ss_pred             CCCCCEEEEEEECCcHHHHHHHHH--HHcCCCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeCcccCCh----HHHHHHH
Confidence            667889999999999999999976  4556778999999999999999999999999999998876643    4556666


Q ss_pred             ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCcccccee
Q psy13615         87 GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLV  159 (263)
Q Consensus        87 ~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~  159 (263)
                        ++                   +++|++++||||+.+    ++  +.+++|+|||+        ||+ .|.+..    +
T Consensus        79 --~~-------------------~~~Dlivlagy~~IL~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~  125 (215)
T 3kcq_A           79 --RE-------------------HDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSL--------LPSFKGLNAQ----E  125 (215)
T ss_dssp             --HH-------------------TTCSEEEESSCCSCCCHHHHHHTTTSEEEEESSC--------TTTTCSSCHH----H
T ss_pred             --HH-------------------hCCCEEEEeCCceEeCHHHHhhccCCeEEECccc--------ccCCCCccHH----H
Confidence              66                   899999999999843    22  35799999999        998 565543    3


Q ss_pred             EEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615        160 LCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG  225 (263)
Q Consensus       160 ~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg  225 (263)
                      |++.+|  ++.+|+| .|    ++|+|.|||+|++|..+|+.++|+.+++.+|       +|+++++.+.+..
T Consensus       126 ~Ai~~G--~~~tGvT-vh----~v~~~lD~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~e~~ll~~~l~~~~~g~  191 (215)
T 3kcq_A          126 QAYKAG--VKIAGCT-LH----YVYQELDAGPIIMQAAVPVLREDTAESLASRILAAEHVCYPKGVKLIAQDK  191 (215)
T ss_dssp             HHHHHT--CSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHcC--CCeEEEE-EE----EEcCCCCCCCEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            455555  5679999 47    9999999999999999999988888877665       5888999986543

>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*

Probab=99.97  E-value=2.5e-31  Score=231.86  Aligned_cols=174  Identities=25%  Similarity=0.324  Sum_probs=144.4

Q ss_pred             CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcc
Q psy13615         10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGA   88 (263)
Q Consensus        10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~   88 (263)
                      ++||+||+||+||||++|+++  .+. .++++|++|+||++ ++++++|+++|||++.++++++.++ ++++++++.+  
T Consensus        12 ~~ri~vl~SG~gsnl~all~~--~~~-~~~~eI~~Vis~~~-a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l--   85 (215)
T 3da8_A           12 PARLVVLASGTGSLLRSLLDA--AVG-DYPARVVAVGVDRE-CRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAAT--   85 (215)
T ss_dssp             SEEEEEEESSCCHHHHHHHHH--SST-TCSEEEEEEEESSC-CHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH--
T ss_pred             CcEEEEEEeCChHHHHHHHHH--Hhc-cCCCeEEEEEeCCc-hHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHH--
Confidence            569999999999999999976  332 56789999999986 9999999999999999988777666 7788888888  


Q ss_pred             ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615         89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC  161 (263)
Q Consensus        89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a  161 (263)
                      ++                   +++|++++||||+.+    ++  +.+++|+|||+        ||+ .|.+..    +|+
T Consensus        86 ~~-------------------~~~Dlivlagy~~iL~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~A  134 (215)
T 3da8_A           86 AA-------------------HEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPAL--------LPAFPGTHGV----ADA  134 (215)
T ss_dssp             HT-------------------TCCSEEEEEECCSCCCHHHHHHHTTTEEEEESSC--------TTSSCSTTHH----HHH
T ss_pred             Hh-------------------hCCCEEEEcCchhhCCHHHHhhccCCeEEeCccc--------ccCCCCchHH----HHH
Confidence            77                   999999999999843    22  45799999999        998 565543    345


Q ss_pred             EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCCC
Q psy13615        162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGTP  227 (263)
Q Consensus       162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~~  227 (263)
                      +.+|  .+.+|+| .|    ++|+|+|||+|++|..+|+.++|+.+++.+|       +|+++++.+.+....
T Consensus       135 i~~G--~~~tGvT-vh----~v~~~lD~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~  200 (215)
T 3da8_A          135 LAYG--VKVTGAT-VH----LVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVT  200 (215)
T ss_dssp             HHHT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred             HHcC--CCeEEEE-EE----EEcCCCCCCCEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence            5555  6669999 47    9999999999999999999988888877765       588899998765543

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=99.97  E-value=9.4e-31  Score=238.64  Aligned_cols=180  Identities=17%  Similarity=0.146  Sum_probs=146.4

Q ss_pred             eeeecc-CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615          3 VKTRMV-QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQ   81 (263)
Q Consensus         3 ~~~~m~-~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~   81 (263)
                      ++.+-. .++||+||+||+||||++|+++  ++.+.++++|++|+||+++++.  +|+++|||+++++.....+.+++++
T Consensus        97 ~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~--~~~g~l~~~I~~Visn~~~~~~--~A~~~gIp~~~~~~~~~~r~~~~~~  172 (302)
T 3o1l_A           97 WRITDSAQKKRVVLMASRESHCLADLLHR--WHSDELDCDIACVISNHQDLRS--MVEWHDIPYYHVPVDPKDKEPAFAE  172 (302)
T ss_dssp             EEEEETTSCCEEEEEECSCCHHHHHHHHH--HHTTCSCSEEEEEEESSSTTHH--HHHTTTCCEEECCCCSSCCHHHHHH
T ss_pred             eeecccCCCcEEEEEEeCCchhHHHHHHH--HHCCCCCcEEEEEEECcHHHHH--HHHHcCCCEEEcCCCcCCHHHHHHH
Confidence            444433 4779999999999999999966  5678889999999999999874  6999999999997655445577888


Q ss_pred             HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEe----e--cCCcCCccccccCCcEEEEecC-CCCCcc
Q psy13615         82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAV----E--KASLLPKVKDVAAGDVVIALPS-SGIHSN  154 (263)
Q Consensus        82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~----~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~  154 (263)
                      +++.+  ++                   +++|+++|||||+.+.    +  +.++||+|||+        ||+ .|.+..
T Consensus       173 ~~~~l--~~-------------------~~~DliVlagym~IL~~~~l~~~~~~~INiHpSl--------LP~frG~~p~  223 (302)
T 3o1l_A          173 VSRLV--GH-------------------HQADVVVLARYMQILPPQLCREYAHQVINIHHSF--------LPSFVGAKPY  223 (302)
T ss_dssp             HHHHH--HH-------------------TTCSEEEESSCCSCCCTTHHHHTTTCEEEEESSC--------TTSSCSSCHH
T ss_pred             HHHHH--HH-------------------hCCCEEEHhHhhhhcCHHHHhhhhCCeEEeCccc--------ccCCCCccHH
Confidence            88888  77                   9999999999998432    2  35799999999        998 565544


Q ss_pred             ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                          +|++.  +|++.+|+| .|    ++++++|||+|++|..+|+.++|+.+++.++       +|+++++++.+...
T Consensus       224 ----~~Ai~--~G~k~tG~T-vH----~v~~~lD~GpII~Q~~v~I~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~v  291 (302)
T 3o1l_A          224 ----HQASL--RGVKLIGAT-CH----YVTEELDAGPIIEQDVVRVSHRDSIENMVRFGRDVEKMVLARGLRAHLEDRV  291 (302)
T ss_dssp             ----HHHHH--HTCSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             ----HHHHH--cCCCeEEEE-EE----EECCCCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence                34444  457779999 47    9999999999999999999888888876654       68999999976554

>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*

Probab=99.97  E-value=1.1e-30  Score=227.48  Aligned_cols=173  Identities=24%  Similarity=0.326  Sum_probs=145.1

Q ss_pred             ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615         11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK   89 (263)
Q Consensus        11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~   89 (263)
                      +||+||+||+||||++|+++  .+.+.++++|++|+||+++++++++|+++|||++.+++.++.++ ++++++++.+  +
T Consensus         1 ~ri~vl~Sg~gsnl~ali~~--~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l--~   76 (212)
T 1jkx_A            1 MNIVVLISGNGSNLQAIIDA--CKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEI--D   76 (212)
T ss_dssp             CEEEEEESSCCHHHHHHHHH--HHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHH--G
T ss_pred             CEEEEEEECCcHHHHHHHHH--HHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeCcccccchhhccHHHHHHH--H
Confidence            48999999999999999976  45567788999999999999999999999999999988877665 7788888888  7


Q ss_pred             cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615         90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF  162 (263)
Q Consensus        90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai  162 (263)
                      +                   +++|++++||||+.+    ++  +.+++|+|||+        ||+ .|.+..    .|++
T Consensus        77 ~-------------------~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSl--------LP~yrG~~pi----~~ai  125 (212)
T 1jkx_A           77 M-------------------YAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSL--------LPKYPGLHTH----RQAL  125 (212)
T ss_dssp             G-------------------GCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSC--------TTSCCSSCHH----HHHH
T ss_pred             h-------------------cCCCEEEEeChhhhCCHHHHhhccCCEEEEccCc--------ccCCCCccHH----HHHH
Confidence            7                   999999999999843    22  35799999999        998 554433    4455


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG  225 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg  225 (263)
                      .+|  .+.+|+| .|    ++|+|.|||+|.+|..+|+.++|+.+++.+|       +++++++.+.+..
T Consensus       126 ~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~  188 (212)
T 1jkx_A          126 ENG--DEEHGTS-VH----FVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGR  188 (212)
T ss_dssp             HTT--CSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HcC--CCceEEE-EE----EEcccccCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            655  5568999 47    9999999999999999999999888887765       5889999886544

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=99.97  E-value=2.7e-31  Score=240.89  Aligned_cols=175  Identities=18%  Similarity=0.187  Sum_probs=143.7

Q ss_pred             CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhcc
Q psy13615          9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGA   88 (263)
Q Consensus         9 ~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~   88 (263)
                      .++||+||+||+||||++|+++  ++.+.++++|++|+||++++ +.++|+++|||++++++....+.++++++++.+  
T Consensus        87 ~~~ri~vl~Sg~g~nl~~ll~~--~~~g~l~~~i~~Visn~~~a-~~~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l--  161 (287)
T 3nrb_A           87 DRKKVVIMVSKFDHCLGDLLYR--HRLGELDMEVVGIISNHPRE-ALSVSLVGDIPFHYLPVTPATKAAQESQIKNIV--  161 (287)
T ss_dssp             CCCEEEEEECSCCHHHHHHHHH--HHHTSSCCEEEEEEESSCGG-GCCCCCCTTSCEEECCCCGGGHHHHHHHHHHHH--
T ss_pred             CCcEEEEEEeCCCcCHHHHHHH--HHCCCCCeEEEEEEeCChHH-HHHHHHHcCCCEEEEeccCcchhhHHHHHHHHH--
Confidence            4779999999999999999966  56688899999999999986 678899999999999765422336778888888  


Q ss_pred             ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615         89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC  161 (263)
Q Consensus        89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a  161 (263)
                      ++                   +++|+++|||||+.+    ++  +.++||+|||+        ||+ .|.+.+    +|+
T Consensus       162 ~~-------------------~~~Dlivlagym~il~~~~l~~~~~~~iNiHpSl--------LP~~rG~~p~----~~A  210 (287)
T 3nrb_A          162 TQ-------------------SQADLIVLARYMQILSDDLSAFLSGRCINIHHSF--------LPGFKGAKPY----HQA  210 (287)
T ss_dssp             HH-------------------HTCSEEEESSCCSCCCHHHHHHHTTSEEEEESSC--------TTTTCSSCHH----HHH
T ss_pred             HH-------------------hCCCEEEhhhhhhhcCHHHHhhccCCeEEECccc--------ccCCCCchHH----HHH
Confidence            77                   899999999999843    22  46899999999        998 565544    344


Q ss_pred             EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                      +.  +|++.+|+| .|    +++++.|+|+|+.|..+|+.++|+.+++.++       +|+++++++.+...
T Consensus       211 i~--~G~k~tG~T-vh----~v~~~lD~GpIi~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~  275 (287)
T 3nrb_A          211 HT--RGVKLIGAT-AH----FVTADLDEGPIIAQDVEHVSHRDSAEDLVRKGRDIERRVLSRAVLLFLEDRL  275 (287)
T ss_dssp             HH--HTCSEEEEE-EE----ECCSSSSCCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HH--cCCCeEEEE-EE----EECCCCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence            44  457779999 47    9999999999999999999888888876654       68999999876543

>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*

Probab=99.97  E-value=1e-30  Score=227.13  Aligned_cols=173  Identities=27%  Similarity=0.318  Sum_probs=141.4

Q ss_pred             ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615         11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK   89 (263)
Q Consensus        11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~   89 (263)
                      +||+||+||+||||++|+++  .+.+.++++|++|+||++++.++++|+++|||++++++.++.++ ++++++++.+  +
T Consensus         1 ~riaVl~SG~Gs~L~aLi~~--~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l--~   76 (209)
T 1meo_A            1 ARVAVLISGTGSNLQALIDS--TREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVL--E   76 (209)
T ss_dssp             CEEEEEESSSCTTHHHHHHH--HHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH--H
T ss_pred             CeEEEEEECCchHHHHHHHH--HhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECccccCchhhhhHHHHHHH--H
Confidence            48999999999999999976  45566778999999999999999999999999999998877665 6777888877  6


Q ss_pred             cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615         90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF  162 (263)
Q Consensus        90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai  162 (263)
                      +                   +++|++++||||+.+    ++  +.+++|+|||+        ||+ .|.+..    .|++
T Consensus        77 ~-------------------~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~Ai  125 (209)
T 1meo_A           77 E-------------------FSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSL--------LPSFKGSNAH----EQAL  125 (209)
T ss_dssp             H-------------------TTCCEEEEESCCSCCCHHHHHHTTTSEEEEESSS--------TTSSCSSCHH----HHHH
T ss_pred             h-------------------cCCCEEEEcchhhhCCHHHHhhhcCCEEEEccCc--------CcCCCCccHH----HHHH
Confidence            7                   899999999999843    22  35799999999        998 554433    4455


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG  225 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg  225 (263)
                      .+|  .+.+|+| .|    ++|+|.|||+|++|..+|+.++|+.+++.+|       +++++++.+.+..
T Consensus       126 ~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~  188 (209)
T 1meo_A          126 ETG--VTVTGCT-VH----FVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGT  188 (209)
T ss_dssp             HHT--CSEEEEE-EE----ECCC---CCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HcC--CCcEEEE-EE----EECCCCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            655  5669999 47    9999999999999999999999888887766       5888898886543

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=99.96  E-value=1.3e-30  Score=236.24  Aligned_cols=180  Identities=18%  Similarity=0.165  Sum_probs=144.9

Q ss_pred             eeeeccC-CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615          3 VKTRMVQ-RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQ   81 (263)
Q Consensus         3 ~~~~m~~-~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~   81 (263)
                      ++.+... ++||+||+||+||||++|+++  ++.+.++++|++|+||+++++++  |+++|||+++++....++.+++++
T Consensus        82 ~~l~~~~~~~ri~vl~Sg~g~~l~~ll~~--~~~g~l~~~i~~Visn~~~~~~~--A~~~gIp~~~~~~~~~~r~~~~~~  157 (286)
T 3n0v_A           82 FELTAPNHRPKVVIMVSKADHCLNDLLYR--QRIGQLGMDVVAVVSNHPDLEPL--AHWHKIPYYHFALDPKDKPGQERK  157 (286)
T ss_dssp             EEEECTTCCCEEEEEESSCCHHHHHHHHH--HHTTSSCCEEEEEEESSSTTHHH--HHHTTCCEEECCCBTTBHHHHHHH
T ss_pred             EEeecCCCCcEEEEEEeCCCCCHHHHHHH--HHCCCCCcEEEEEEeCcHHHHHH--HHHcCCCEEEeCCCcCCHHHHHHH
Confidence            3444333 679999999999999999966  56678899999999999999865  999999999987654223367788


Q ss_pred             HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCcc
Q psy13615         82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSN  154 (263)
Q Consensus        82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~  154 (263)
                      +++.+  ++                   +++|+++|||||+.+    ++  +.++||+|||+        ||+ .|.+..
T Consensus       158 ~~~~l--~~-------------------~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpSl--------LP~~rG~~p~  208 (286)
T 3n0v_A          158 VLQVI--EE-------------------TGAELVILARYMQVLSPELCRRLDGWAINIHHSL--------LPGFKGAKPY  208 (286)
T ss_dssp             HHHHH--HH-------------------HTCSEEEESSCCSCCCHHHHHHTTTSEEEEEECS--------STTCCCSCHH
T ss_pred             HHHHH--Hh-------------------cCCCEEEecccccccCHHHHhhhcCCeEEecccc--------ccCCCCccHH
Confidence            88888  77                   899999999999843    22  45799999999        998 565544


Q ss_pred             ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                          +|++.+  |++.+|+| .|    +++++.|+|+|+.|..+|+.++|+.+++.++       +|+++++++.+...
T Consensus       209 ----~~Ai~~--G~~~~G~T-vh----~v~~~lD~GpIi~Q~~~~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~  276 (286)
T 3n0v_A          209 ----HQAYNK--GVKMVGAT-AH----YINNDLDEGPIIAQGVEVVDHSHYPEDLIAKGRDIECLTLARAVGYHIERRV  276 (286)
T ss_dssp             ----HHHHHH--TCSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             ----HHHHHc--CCCeEEEE-EE----EEcCCCCCCceeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence                345454  46779999 47    9999999999999999999888888876654       68999999876543

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=99.96  E-value=1.6e-30  Score=236.28  Aligned_cols=174  Identities=17%  Similarity=0.161  Sum_probs=143.0

Q ss_pred             CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhcc
Q psy13615          9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVGA   88 (263)
Q Consensus         9 ~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~~   88 (263)
                      .++||+||+||+||||++|+++  ++.+.++++|++|+||+++++++  |+++|||+++++.....+.++++++++.+  
T Consensus        94 ~~~ri~vl~Sg~g~~l~~ll~~--~~~g~l~~~i~~Visn~~~~~~~--A~~~gIp~~~~~~~~~~r~~~~~~~~~~l--  167 (292)
T 3lou_A           94 ARPKVLIMVSKLEHCLADLLFR--WKMGELKMDIVGIVSNHPDFAPL--AAQHGLPFRHFPITADTKAQQEAQWLDVF--  167 (292)
T ss_dssp             SCCEEEEEECSCCHHHHHHHHH--HHHTSSCCEEEEEEESSSTTHHH--HHHTTCCEEECCCCSSCHHHHHHHHHHHH--
T ss_pred             CCCEEEEEEcCCCcCHHHHHHH--HHcCCCCcEEEEEEeCcHHHHHH--HHHcCCCEEEeCCCcCCHHHHHHHHHHHH--
Confidence            3679999999999999999966  56688899999999999999865  99999999998765423336778888888  


Q ss_pred             ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615         89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC  161 (263)
Q Consensus        89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a  161 (263)
                      ++                   +++|+++|||||+.+    ++  +.++||+|||+        ||+ .|.+.+    +|+
T Consensus       168 ~~-------------------~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpSl--------LP~~rG~~p~----~~A  216 (292)
T 3lou_A          168 ET-------------------SGAELVILARYMQVLSPEASARLANRAINIHHSF--------LPGFKGAKPY----HQA  216 (292)
T ss_dssp             HH-------------------HTCSEEEESSCCSCCCHHHHHHTTTSEEEEEEEC--------SSCCCSSCHH----HHH
T ss_pred             HH-------------------hCCCEEEecCchhhCCHHHHhhhcCCeEEeCCCc--------CcCCCCccHH----HHH
Confidence            77                   899999999999843    22  45799999999        998 565544    345


Q ss_pred             EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                      +.+  |++.+|+| .|    +++++.|+|+|+.|..+|+.++|+.+++.++       +|+++++++.+...
T Consensus       217 i~~--G~~~~G~T-vh----~v~~~lD~G~Ii~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~  281 (292)
T 3lou_A          217 HAR--GVKLIGAT-AH----FVTDDLDEGPIIEQVVERVDHSYRPEQLLAVGRDVECITLARAVKAFIERRV  281 (292)
T ss_dssp             HHH--TCSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHc--CCCeEEEE-EE----EEcCCCcCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence            454  46779999 47    9999999999999999999888888876654       68999999976544

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=99.96  E-value=1.6e-30  Score=235.87  Aligned_cols=174  Identities=14%  Similarity=0.113  Sum_probs=142.2

Q ss_pred             CCccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecC-CCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhc
Q psy13615          9 QRKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNK-HNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVG   87 (263)
Q Consensus         9 ~~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~-~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~   87 (263)
                      .++||+||+||+||||++|+++  ++.+.++++|++|+||+ +++.  ++|+++|||++++++....+.++++++++.+ 
T Consensus        88 ~~~ri~vl~Sg~g~nl~~ll~~--~~~g~l~~~i~~Visn~p~~~~--~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l-  162 (288)
T 3obi_A           88 TRRKVMLLVSQSDHCLADILYR--WRVGDLHMIPTAIVSNHPRETF--SGFDFGDIPFYHFPVNKDTRRQQEAAITALI-  162 (288)
T ss_dssp             SCEEEEEEECSCCHHHHHHHHH--HHTTSSCEEEEEEEESSCGGGS--CCTTTTTCCEEECCCCTTTHHHHHHHHHHHH-
T ss_pred             CCcEEEEEEcCCCCCHHHHHHH--HHCCCCCeEEEEEEcCCChhHH--HHHHHcCCCEEEeCCCcccHHHHHHHHHHHH-
Confidence            4779999999999999999966  56788899999999999 7765  6799999999999876523337778888888 


Q ss_pred             cccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeE
Q psy13615         88 AKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVL  160 (263)
Q Consensus        88 ~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~  160 (263)
                       ++                   +++|+++|||||+.+    ++  +.++||+|||+        ||+ .|.+..    +|
T Consensus       163 -~~-------------------~~~Dlivlagy~~il~~~~l~~~~~~~iNiHpSl--------LP~~rG~~p~----~~  210 (288)
T 3obi_A          163 -AQ-------------------THTDLVVLARYMQILSDEMSARLAGRCINIHHSF--------LPGFKGAKPY----HQ  210 (288)
T ss_dssp             -HH-------------------HTCCEEEESSCCSCCCHHHHHHTTTSEEEEEEEC--------SSCCCSSCHH----HH
T ss_pred             -Hh-------------------cCCCEEEhhhhhhhCCHHHHhhhcCCeEEeCccc--------ccCCCCchHH----HH
Confidence             77                   899999999999843    22  45799999999        998 565543    34


Q ss_pred             EEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        161 CFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       161 ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                      ++.+  |++.+|+| .|    +++++.|+|+|+.|..+|+.++|+.+++.++       +|+++++++.+...
T Consensus       211 A~~~--G~~~~G~T-vh----~v~~~~D~GpIi~Q~~v~i~~~dt~~~L~~r~~~~e~~~l~~av~~~~~~~~  276 (288)
T 3obi_A          211 AFDR--GVKLIGAT-AH----YVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRV  276 (288)
T ss_dssp             HHHH--TCSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHc--CCCEEEEE-EE----EECCCCcCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence            5454  46779999 47    9999999999999999999888888876654       68999999876543

>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}

Probab=99.96  E-value=6.4e-30  Score=222.59  Aligned_cols=174  Identities=21%  Similarity=0.298  Sum_probs=143.7

Q ss_pred             ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615         11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK   89 (263)
Q Consensus        11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~   89 (263)
                      +||+||+||+|+|+++++++.  ..+.++++|++|+||+++++++++|+++|||++++++.++.++ ++++++++.+  +
T Consensus         4 ~ki~vl~sG~g~~~~~~l~~l--~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l--~   79 (212)
T 3av3_A            4 KRLAVFASGSGTNFQAIVDAA--KRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSPKDYPSKAAFESEILREL--K   79 (212)
T ss_dssp             EEEEEECCSSCHHHHHHHHHH--HTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH--H
T ss_pred             cEEEEEEECCcHHHHHHHHHH--HhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHH--H
Confidence            589999999999999999764  4455678999999999999999999999999999988877665 7788888877  6


Q ss_pred             cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615         90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF  162 (263)
Q Consensus        90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai  162 (263)
                      +                   +++|++++||||+.+    ++  +.+++|+|||+        ||+ .|.+..    +|++
T Consensus        80 ~-------------------~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~Ai  128 (212)
T 3av3_A           80 G-------------------RQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPSL--------LPAFPGKDAI----GQAY  128 (212)
T ss_dssp             H-------------------TTCCEEEESSCCSCCCHHHHHHTTTCEEEEESSC--------TTSSCSTTHH----HHHH
T ss_pred             h-------------------cCCCEEEEchhhhhCCHHHHhhhcCCEEEEecCc--------CCCCCCcCHH----HHHH
Confidence            7                   899999999999843    23  35799999999        998 555443    4455


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                      .+|  .+.+|+| .|    ++|+|.|||+|++|..+|+.++|+.+++.++       +|+++++.+.+...
T Consensus       129 ~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~~~~ll~~~l~~~~~g~~  192 (212)
T 3av3_A          129 RAG--VSETGVT-VH----YVDEGMDTGPVIAQRVVPIVPGEPIEALEERIHQVEHELYPTVLRMLLGEKE  192 (212)
T ss_dssp             HHT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HcC--CCeEEEE-EE----EECCCCCCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            655  5679999 47    9999999999999999999999888887765       58888998865443

>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}

Probab=99.96  E-value=2e-29  Score=220.07  Aligned_cols=173  Identities=21%  Similarity=0.277  Sum_probs=143.5

Q ss_pred             ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615         11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK   89 (263)
Q Consensus        11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~   89 (263)
                      +||+||+||+|+|+++++++.  ..+.++++|++|+||++++.++++|+++|||++++++.++.++ ++++++++.+  +
T Consensus         2 ~rI~vl~SG~g~~~~~~l~~l--~~~~~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l--~   77 (216)
T 2ywr_A            2 LKIGVLVSGRGSNLQAIIDAI--ESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALEL--K   77 (216)
T ss_dssp             EEEEEEECSCCHHHHHHHHHH--HTTSSCEEEEEEEESCTTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHH--H
T ss_pred             CEEEEEEeCCcHHHHHHHHHH--HhCCCCCeEEEEEeCCCChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHH--H
Confidence            589999999999999999774  3344567999999999999999999999999999988877665 7778888877  6


Q ss_pred             cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEE
Q psy13615         90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCF  162 (263)
Q Consensus        90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai  162 (263)
                      +                   +++|++++||||+.+    ++  +.+++|+|||+        ||+ .|.+..    +|++
T Consensus        78 ~-------------------~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~ai  126 (216)
T 2ywr_A           78 K-------------------KGVELVVLAGFMRILSHNFLKYFPNKVINIHPSL--------IPAFQGLHAQ----KQAV  126 (216)
T ss_dssp             H-------------------TTCCEEEESSCCSCCCHHHHTTSTTCEEEEESSC--------TTTTCSTTHH----HHHH
T ss_pred             h-------------------cCCCEEEEeCchhhCCHHHHhhccCCeEEEcCCc--------CcCCCCccHH----HHHH
Confidence            7                   899999999999843    33  35789999999        998 555543    3455


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG  225 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg  225 (263)
                      .+|  .+.+|+| .|    ++|+|.|||+|++|..+|+.++|+.+++.+|       +++++++.+.+..
T Consensus       127 ~~G--~~~tGvT-vh----~v~~~~D~G~Ii~q~~~~i~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~  189 (216)
T 2ywr_A          127 EFG--VKFSGCT-VH----IVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDR  189 (216)
T ss_dssp             HHT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HcC--CCeEEEE-EE----EEcccCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            655  5568999 47    9999999999999999999988888887765       5888898886543

>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}

Probab=99.96  E-value=2.3e-29  Score=221.49  Aligned_cols=174  Identities=22%  Similarity=0.311  Sum_probs=144.6

Q ss_pred             CccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcc
Q psy13615         10 RKRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGA   88 (263)
Q Consensus        10 ~~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~   88 (263)
                      |+||+||+||+|+|+++++++.  ..+.++++|++|+||+++++++++|+++|||++++++.++.++ ++++++++.+  
T Consensus        22 ~~rI~~l~SG~g~~~~~~l~~l--~~~~~~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l--   97 (229)
T 3auf_A           22 MIRIGVLISGSGTNLQAILDGC--REGRIPGRVAVVISDRADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERL--   97 (229)
T ss_dssp             CEEEEEEESSCCHHHHHHHHHH--HTTSSSEEEEEEEESSTTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHH--
T ss_pred             CcEEEEEEeCCcHHHHHHHHHH--HhCCCCCeEEEEEcCCCchHHHHHHHHcCCCEEEECcccccchhhccHHHHHHH--
Confidence            5699999999999999999764  3345568999999999999999999999999999988887665 7778888877  


Q ss_pred             ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEE
Q psy13615         89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLC  161 (263)
Q Consensus        89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~a  161 (263)
                      ++                   +++|++++||||+.+    ++  +.+++|+|||+        ||+ .|.+..    .|+
T Consensus        98 ~~-------------------~~~Dliv~agy~~IL~~~~l~~~~~~~iNiHpSL--------LP~yrG~~pi----~~A  146 (229)
T 3auf_A           98 QA-------------------YGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSL--------LPAFPGLEAQ----RQA  146 (229)
T ss_dssp             HH-------------------TTCSEEEESSCCSCCCHHHHHHSTTCEEEEESSC--------TTSSCSSCHH----HHH
T ss_pred             Hh-------------------cCCCEEEEcChhHhCCHHHHhhccCCEEEEccCc--------CcCCCCcCHH----HHH
Confidence            67                   899999999999843    22  35799999999        998 554433    445


Q ss_pred             EecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615        162 FTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG  225 (263)
Q Consensus       162 i~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg  225 (263)
                      +.+|  .+.+|+| .|    ++|+|.|||+|++|..+|+.++|+.+++.+|       +|+++++.+.+..
T Consensus       147 i~~G--~~~tGvT-vh----~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~  210 (229)
T 3auf_A          147 LEHG--VKVAGCT-VH----FVTAGVDEGPIILQAAVPVLEGDTVEDLRRRILAEEHRIYPEAIRLFAEGR  210 (229)
T ss_dssp             HHHT--CSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHcC--CCeEEEE-EE----EECCCCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5655  5669999 47    9999999999999999999999888887765       5888999886543

>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A

Probab=99.83  E-value=4.3e-21  Score=175.25  Aligned_cols=160  Identities=15%  Similarity=0.140  Sum_probs=125.9

Q ss_pred             ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC-------ChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615         11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN-------VEGLNIARNAGIPTKVSTYKHTLILSNSLQ   81 (263)
Q Consensus        11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~-------a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~   81 (263)
                      +||+||+|+.  ++||++|+++        +.+|++|+||.++       +++.++|+++|||++.++...  +    .+
T Consensus         1 mrivf~gt~~fa~~~L~~L~~~--------~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIpv~~~~~~~--~----~~   66 (305)
T 2bln_A            1 MKTVVFAYHDMGCLGIEALLAA--------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVN--H----PL   66 (305)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT--------TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCC--S----HH
T ss_pred             CEEEEEEcCHHHHHHHHHHHHC--------CCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCCEECCCcCC--c----HH
Confidence            4899999998  9999999843        3699999998655       368999999999999876543  2    23


Q ss_pred             HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccc
Q psy13615         82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNG  155 (263)
Q Consensus        82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g  155 (263)
                      +++.+  ++                   +++|++++||||+.+    ++  +.+++|+|||+        ||.    ++|
T Consensus        67 ~~~~l--~~-------------------~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpSL--------LP~----yRG  113 (305)
T 2bln_A           67 WVERI--AQ-------------------LSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSL--------LPK----YRG  113 (305)
T ss_dssp             HHHHH--HH-------------------TCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSC--------TTT----TEE
T ss_pred             HHHHH--Hh-------------------cCCCEEEEeccccccCHHHHhcCcCCEEEecCCc--------CcC----CCC
Confidence            44555  56                   889999999999842    22  35689999999        998    344


Q ss_pred             cce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhc
Q psy13615        156 FSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAE  224 (263)
Q Consensus       156 ~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~e  224 (263)
                      .++ +|++.+|  .+.+|+| .|    +.|+|.|||+|.+|..+|+.++|+.+++.++       ++.++++.+.+.
T Consensus       114 ~~pi~~ai~~G--~~~tGvT-ih----~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g  183 (305)
T 2bln_A          114 RAPLNWVLVNG--ETETGVT-LH----RMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHG  183 (305)
T ss_dssp             SCHHHHHHHTT--CSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHcC--CCcEEEE-EE----EECCCccCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            444 5566766  4559999 46    9999999999999999999998888888776       478888888643

>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A

Probab=99.82  E-value=9.3e-21  Score=173.69  Aligned_cols=162  Identities=17%  Similarity=0.156  Sum_probs=125.3

Q ss_pred             CCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEec--CCC--------ChhhHHHHHcCCCEEEeeCCCCCCH
Q psy13615          9 QRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSN--KHN--------VEGLNIARNAGIPTKVSTYKHTLIL   76 (263)
Q Consensus         9 ~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn--~~~--------a~gl~~A~~~gIP~~~v~~~~~~~~   76 (263)
                      .++||+||+|+.  +++|++|+++        +.+|++|+||  ++.        +++.++|+++|||++..  .++.+ 
T Consensus         2 ~~mrIvf~Gt~~fa~~~L~~L~~~--------~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~--~~~~~-   70 (314)
T 1fmt_A            2 ESLRIIFAGTPDFAARHLDALLSS--------GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQP--VSLRP-   70 (314)
T ss_dssp             CCCEEEEEECSHHHHHHHHHHHHT--------TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECC--SCSCS-
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHC--------CCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEEec--CCCCC-
Confidence            457999999999  9999999842        2699999998  332        57899999999998643  33323 


Q ss_pred             HHHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCC
Q psy13615         77 SNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSG  150 (263)
Q Consensus        77 ~~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G  150 (263)
                         .++++.+  ++                   +++|++++||||+.+    ++  +.+++|+|||+        ||.  
T Consensus        71 ---~~~~~~l--~~-------------------~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpSL--------LP~--  116 (314)
T 1fmt_A           71 ---QENQQLV--AE-------------------LQADVMVVVAYGLILPKAVLEMPRLGCINVHGSL--------LPR--  116 (314)
T ss_dssp             ---HHHHHHH--HH-------------------TTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSS--------TTT--
T ss_pred             ---HHHHHHH--Hh-------------------cCCCEEEEeeccccCCHHHHhhccCCEEEEcCCc--------CcC--
Confidence               2344555  56                   889999999999842    33  35689999999        998  


Q ss_pred             CCccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHH
Q psy13615        151 IHSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMI  222 (263)
Q Consensus       151 ~~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~  222 (263)
                        ++|.++ +|++.+|  .+.+|+| .|    +.|+|.|||+|.+|..+|+.++|+.+++.++       ++.++++.+.
T Consensus       117 --yRG~~pi~~Ai~~G--~~~tGvT-ih----~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~  187 (314)
T 1fmt_A          117 --WRGAAPIQRSLWAG--DAETGVT-IM----QMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLA  187 (314)
T ss_dssp             --TBSSCHHHHHHHHT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcCHHHHHHHcC--CCceEEE-EE----EEcccCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              333444 5677766  4558999 46    9999999999999999999998888887765       5788888886


Q ss_pred             hc
Q psy13615        223 AE  224 (263)
Q Consensus       223 ~e  224 (263)
                      +.
T Consensus       188 ~g  189 (314)
T 1fmt_A          188 DG  189 (314)
T ss_dssp             HT
T ss_pred             cC
Confidence            53

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.81  E-value=1.8e-20  Score=185.95  Aligned_cols=160  Identities=15%  Similarity=0.147  Sum_probs=126.1

Q ss_pred             ccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCC-------hhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615         11 KRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNV-------EGLNIARNAGIPTKVSTYKHTLILSNSLQ   81 (263)
Q Consensus        11 ~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a-------~gl~~A~~~gIP~~~v~~~~~~~~~~~~~   81 (263)
                      +||+||+|+.  ++||++|+++        +++|++|+||++++       ++.++|+++|||++.++....      .+
T Consensus         1 ~ri~~~~s~~~~~~~l~~l~~~--------~~~i~~v~t~~~~~~~~~~~~~~~~~a~~~~ip~~~~~~~~~------~~   66 (660)
T 1z7e_A            1 MKTVVFAYHDMGCLGIEALLAA--------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNH------PL   66 (660)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT--------TCEEEEEECCCC--------CCHHHHHHHHTCCEECCSCTTS------HH
T ss_pred             CEEEEEEeCHHHHHHHHHHHhC--------CCCEEEEEeCCCCCccCcCccHHHHHHHHcCCCEeccCCCCc------HH
Confidence            4899999998  9999999943        36999999997664       589999999999988765431      23


Q ss_pred             HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCcc
Q psy13615         82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSN  154 (263)
Q Consensus        82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~  154 (263)
                      +++.+  ++                   +++|++++||||+.+    ++  +.++||+||||        ||+ .|.+..
T Consensus        67 ~~~~l--~~-------------------~~~d~iv~~~~~~il~~~~l~~~~~~~iNiH~sl--------LP~~rG~~p~  117 (660)
T 1z7e_A           67 WVERI--AQ-------------------LSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSL--------LPKYRGRAPL  117 (660)
T ss_dssp             HHHHH--HH-------------------HCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSS--------TTTTCSSCHH
T ss_pred             HHHHH--Hh-------------------cCCCEEEEcCcccccCHHHHhcCCCCeEEecCCc--------CCCCCCccHH
Confidence            45555  56                   789999999999843    33  35689999999        998 554433


Q ss_pred             ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhc
Q psy13615        155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAE  224 (263)
Q Consensus       155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~e  224 (263)
                          +|++.+|  .+.+|+| .|    ++|+|.|||+|++|..+|+.++|+.+++.++       ++.++++.+.+.
T Consensus       118 ----~~ai~~g--~~~~G~t-~~----~~~~~~D~G~ii~q~~~~i~~~dt~~~l~~~~~~~~~~~~~~~l~~~~~~  183 (660)
T 1z7e_A          118 ----NWVLVNG--ETETGVT-LH----RMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHG  183 (660)
T ss_dssp             ----HHHHHTT--CSEEEEE-EE----ECCSSTTTSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ----HHHHHcC--CCcEEEE-EE----EECCCccCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                4466655  5569999 47    9999999999999999999988888887765       578888888543

>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}

Probab=99.79  E-value=5.5e-20  Score=168.82  Aligned_cols=165  Identities=15%  Similarity=0.145  Sum_probs=122.0

Q ss_pred             eccCCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEec--CCC--------ChhhHHHHHcCCCEEEeeCCCC
Q psy13615          6 RMVQRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSN--KHN--------VEGLNIARNAGIPTKVSTYKHT   73 (263)
Q Consensus         6 ~m~~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn--~~~--------a~gl~~A~~~gIP~~~v~~~~~   73 (263)
                      -||+++||+||+|..  -.+|++|+++        +++|++|+|+  ++.        ++..++|+++|||++.  +.++
T Consensus         3 ~m~~~mrivf~Gt~~fa~~~L~~L~~~--------~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~--~~~~   72 (318)
T 3q0i_A            3 AMSQSLRIVFAGTPDFAARHLAALLSS--------EHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQ--PENF   72 (318)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHTS--------SSEEEEEECCCC---------CCCHHHHHHHHTTCCEEC--CSCS
T ss_pred             ccccCCEEEEEecCHHHHHHHHHHHHC--------CCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEc--cCcC
Confidence            378889999999987  5788888822        3699999996  333        4668999999999864  3333


Q ss_pred             CCHHHHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEec
Q psy13615         74 LILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALP  147 (263)
Q Consensus        74 ~~~~~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp  147 (263)
                      .+    .++++.+  ++                   +++|++++||||+.+    ++  +..++|+|||+        ||
T Consensus        73 ~~----~~~~~~l--~~-------------------~~~Dliv~~~y~~ilp~~~l~~~~~g~iNiHpSl--------LP  119 (318)
T 3q0i_A           73 KS----DESKQQL--AA-------------------LNADLMVVVAYGLLLPKVVLDTPKLGCINVHGSI--------LP  119 (318)
T ss_dssp             CS----HHHHHHH--HT-------------------TCCSEEEESSCCSCCCHHHHTSSTTCEEEEESSS--------TT
T ss_pred             CC----HHHHHHH--Hh-------------------cCCCEEEEeCccccCCHHHHhhCcCCEEEeCCcc--------Cc
Confidence            33    2345656  66                   899999999999843    22  34589999999        99


Q ss_pred             C-CCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHH
Q psy13615        148 S-SGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIK  219 (263)
Q Consensus       148 ~-~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~  219 (263)
                      . .|.+..    +|++.+|  ...+|+| .|    +.|+|.|||+|++|..+|+.++|+.+++.++       ++.++++
T Consensus       120 ~yRG~~pi----~~Ai~~G--~~~tGvT-ih----~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~  188 (318)
T 3q0i_A          120 RWRGAAPI----QRSIWAG--DSETGVT-IM----QMDVGLDTGDMLKIATLPIEASDTSASMYDKLAELGPQALLECLQ  188 (318)
T ss_dssp             TTBSSCHH----HHHHHHT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHH----HHHHHcC--CCeEEEE-EE----EEcCCCCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            8 444322    5566766  4559999 46    9999999999999999999988888887765       5778888


Q ss_pred             HHHhc
Q psy13615        220 KMIAE  224 (263)
Q Consensus       220 ~~~~e  224 (263)
                      .+.+.
T Consensus       189 ~l~~g  193 (318)
T 3q0i_A          189 DIAQG  193 (318)
T ss_dssp             HHHHT
T ss_pred             HHHcC
Confidence            88653

>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A

Probab=99.77  E-value=9.8e-20  Score=167.88  Aligned_cols=170  Identities=15%  Similarity=0.098  Sum_probs=121.7

Q ss_pred             eccCCccEEEEEcCcchhHHH-HHHHhccccCCCCceEEEEEe--cCC--CChhhHHHHHcCCCEEEeeCCCCCCHHHHH
Q psy13615          6 RMVQRKRVAVLISGTGTNLKS-LLEATSNRSDIMRAEIVLVVS--NKH--NVEGLNIARNAGIPTKVSTYKHTLILSNSL   80 (263)
Q Consensus         6 ~m~~~~riavl~SG~Gsnl~a-l~~~~~~~~~~l~~~iv~Vis--n~~--~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~   80 (263)
                      .|+.++||+||+   ++||.. ++++...  .  +.+|++|+|  |++  ..+..++|+++|||++.++.... +.++..
T Consensus        18 ~~~~~mrIvf~G---~~~fa~~~L~~L~~--~--~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIpv~~~~~~~~-~~~~~~   89 (329)
T 2bw0_A           18 LYFQSMKIAVIG---QSLFGQEVYCHLRK--E--GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRA-KGQALP   89 (329)
T ss_dssp             ---CCCEEEEEC---CHHHHHHHHHHHHH--T--TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEE-TTEECH
T ss_pred             ccCCCCEEEEEc---CcHHHHHHHHHHHH--C--CCeEEEEEeCCCcCCCCCHHHHHHHHcCCCEEecCcccc-cccccH
Confidence            466678999993   467764 5554322  2  369999999  221  24667999999999999875321 113345


Q ss_pred             HHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCc
Q psy13615         81 QVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHS  153 (263)
Q Consensus        81 ~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~  153 (263)
                      ++++.+  ++                   +++|++++||||+.+    ++  +.++||+|||+        ||. .|.+.
T Consensus        90 ~~~~~l--~~-------------------~~~Dliv~a~y~~ilp~~il~~~~~g~iNiHpSL--------LP~yRG~~p  140 (329)
T 2bw0_A           90 DVVAKY--QA-------------------LGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSL--------LPRHRGASA  140 (329)
T ss_dssp             HHHHHH--HT-------------------TCCSEEEESSCSSCCCHHHHTCSTTCEEEEESSC--------TTTTBSSCH
T ss_pred             HHHHHH--Hh-------------------cCCCEEEEeehhhhCCHHHHhhCcCCEEEEcCCc--------CcCCCCcCH
Confidence            566766  66                   899999999999842    23  35689999999        998 44433


Q ss_pred             cccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHH--------HHHHHHHHHh
Q psy13615        154 NGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTI--------LMRVIKKMIA  223 (263)
Q Consensus       154 ~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~i--------l~~~i~~~~~  223 (263)
                      .    +|++.+|  .+.+|+| .|    ++|+|.|||+|++|..+|+.++|+.+++.+++        +.++++.+.+
T Consensus       141 i----~~Ai~~G--~~~tGvT-vh----~~~~~lDtG~Ii~Q~~v~I~~~dt~~~L~~r~l~~~~~~ll~~~l~~l~~  207 (329)
T 2bw0_A          141 I----NWTLIHG--DKKGGFS-IF----WADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAE  207 (329)
T ss_dssp             H----HHHHHTT--CSEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             H----HHHHHcC--CCcEEEE-EE----EECCcCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2    4566665  5569999 46    89999999999999999999999998888773        4456666654

>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}

Probab=99.72  E-value=9.7e-18  Score=153.64  Aligned_cols=161  Identities=16%  Similarity=0.179  Sum_probs=120.1

Q ss_pred             CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEec--CC--------CChhhHHHHHcCCCEEEeeCCCCCCHH
Q psy13615         10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSN--KH--------NVEGLNIARNAGIPTKVSTYKHTLILS   77 (263)
Q Consensus        10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn--~~--------~a~gl~~A~~~gIP~~~v~~~~~~~~~   77 (263)
                      ++||+||+|..  -..|++|+++        +.+|++|+|+  ++        .++..++|+++|||++.  ..++.+. 
T Consensus         2 ~mrivf~Gtp~fa~~~L~~L~~~--------~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~--~~~~~~~-   70 (314)
T 3tqq_A            2 SLKIVFAGTPQFAVPTLRALIDS--------SHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQ--PFSLRDE-   70 (314)
T ss_dssp             CCEEEEEECSGGGHHHHHHHHHS--------SSEEEEEECCCC----------CCHHHHHHHHTTCCEEC--CSCSSSH-
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC--------CCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEEC--cccCCCH-
Confidence            35999999997  4578888732        3699999994  44        24667999999999754  3333332 


Q ss_pred             HHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCC
Q psy13615         78 NSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGI  151 (263)
Q Consensus        78 ~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~  151 (263)
                         ++++.+  ++                   +++|+++++|||+.+    ++  +..++|+|||+        ||.   
T Consensus        71 ---~~~~~l--~~-------------------~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSl--------LP~---  115 (314)
T 3tqq_A           71 ---VEQEKL--IA-------------------MNADVMVVVAYGLILPKKALNAFRLGCVNVHASL--------LPR---  115 (314)
T ss_dssp             ---HHHHHH--HT-------------------TCCSEEEEESCCSCCCHHHHTSSTTCEEEEESSC--------TTT---
T ss_pred             ---HHHHHH--Hh-------------------cCCCEEEEcCcccccCHHHHhhCcCCEEEecCcc--------ccC---
Confidence               345656  56                   899999999999842    33  34589999999        998   


Q ss_pred             Cccccce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHh
Q psy13615        152 HSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIA  223 (263)
Q Consensus       152 ~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~  223 (263)
                       ++|.++ +|++.+|.  ..+|+| .|    +.|+|.|||+|.+|..+|+.++|+.+++.++       ++.++++.+.+
T Consensus       116 -yRG~~pi~~Ai~~G~--~~tGvT-ih----~~~~~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~  187 (314)
T 3tqq_A          116 -WRGAAPIQRAILAGD--RETGIS-IM----QMNEGLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEK  187 (314)
T ss_dssp             -TBSSCHHHHHHHHTC--SEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCccHHHHHHHcCC--CeeEEE-EE----eeecCCCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence             333333 55667664  559999 46    9999999999999999999988888887765       57788888864


Q ss_pred             c
Q psy13615        224 E  224 (263)
Q Consensus       224 e  224 (263)
                      .
T Consensus       188 g  188 (314)
T 3tqq_A          188 G  188 (314)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A

Probab=99.55  E-value=9.4e-15  Score=138.53  Aligned_cols=112  Identities=34%  Similarity=0.531  Sum_probs=96.4

Q ss_pred             cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHH
Q psy13615        141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKK  220 (263)
Q Consensus       141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~  220 (263)
                      .++|+-.-.|   .++|+. ++.||..+.+++.+++||++++.|.||+||||++++|.|.++++..+++.+.++.++++.
T Consensus       186 ~vlvEe~i~G---~E~sv~-~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~  261 (431)
T 3mjf_A          186 RIVVEEFLDG---EEASFI-VMVDGENVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRG  261 (431)
T ss_dssp             CEEEEECCCS---EEEEEE-EEEESSCEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHH
T ss_pred             eEEEEEeeCC---cEEEEE-EEEcCCEEEEEEeeEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4556444455   457764 778988888899999999999999999999999999999899999999998899999999


Q ss_pred             HHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        221 MIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       221 ~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      |..++++|+|+++++++.+..+       .+.|+|+|+|||||
T Consensus       262 ~~~~g~~~~G~~~ve~~~~~~g-------~~~viEiN~R~G~~  297 (431)
T 3mjf_A          262 MAAEGNIYTGFLYAGLMISADG-------QPKVIEFNCRFGDP  297 (431)
T ss_dssp             HHHTTCCCEEEEEEEEEECTTS-------CEEEEEECGGGSTT
T ss_pred             HHHcCCCcEEEEEEEEEEeCCC-------CeEEEEEecCCCCc
Confidence            9999999999999999955433       05678999999998

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}

Probab=99.51  E-value=2e-14  Score=136.78  Aligned_cols=112  Identities=30%  Similarity=0.421  Sum_probs=96.3

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK  219 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~  219 (263)
                      ..++|+-.-.|   .++|+. ++.||..+.+++.+++|++.++.|.|++||||++++|.|.++++..+++.+.|+.++++
T Consensus       201 ~~vlvEe~i~G---~E~sv~-~~~dg~~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~  276 (442)
T 3lp8_A          201 CAIIIEEFLEG---KEISFF-TLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIK  276 (442)
T ss_dssp             SSEEEEECCCS---EEEEEE-EEEESSCEEEEEEEEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHH
T ss_pred             CeEEEEEeecC---cEEEEE-EEECCCeEEEeEEeEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHH
Confidence            35566544345   457764 77898888888999999999999999999999999999989999999999889999999


Q ss_pred             HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      .|..+|++|.|+++++|+.        +..|+.++|+|+|||||
T Consensus       277 ~~~a~g~~~~G~~~ve~~~--------~~~g~~viEiN~R~g~~  312 (442)
T 3lp8_A          277 AMFNMNIQFRGLLFAGIII--------KKNEPKLLEYNVRFGDP  312 (442)
T ss_dssp             HHHHTTCCCEEEEEEEEEE--------ETTEEEEEEEESSCCTT
T ss_pred             HHHHcCCCceeEEEEEEEE--------eCCCeEEEEEecCCCCC
Confidence            9999999999999999994        44456788999999997

>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}

Probab=99.30  E-value=1e-13  Score=129.80  Aligned_cols=138  Identities=14%  Similarity=0.109  Sum_probs=108.9

Q ss_pred             ccEEEEEcCc---chhHHHHHHHhc-----cccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC------CH
Q psy13615         11 KRVAVLISGT---GTNLKSLLEATS-----NRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL------IL   76 (263)
Q Consensus        11 ~riavl~SG~---Gsnl~al~~~~~-----~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~------~~   76 (263)
                      .+-.+|+|++   ||+++-..+...     .++..++.+.++++.||-.|.|.+       |.+++++ .++      ..
T Consensus        47 ~~~pvLv~~tDGVGTKl~lA~~~~k~tg~~~~~~tIG~daVam~VNDIaamGA~-------Pl~~L~~-a~g~l~~~~~~  118 (394)
T 3kiz_A           47 DPEYCNIMHADGAGTKSSLAYVYWKETGDISVWKGIAQDAVIMNIDDLICVGAV-------DNILLSS-TIGRNKNLIPG  118 (394)
T ss_dssp             CTTEEEEEEEEECTTHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHGGGTCC-------SSEEEEE-EEEECTTTSCH
T ss_pred             CCCceEEEEccCCcHHHHHHHHhhhhcccccchhhhhhhheEeeHHHHHhCcCc-------hHHHHHh-hcCcCccCCCH
Confidence            3556788877   999987763210     123456789999999999999987       9988876 332      23


Q ss_pred             HHHHHHHHHh--cc---ccCCCCc--eeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCC
Q psy13615         77 SNSLQVMQKV--GA---KYSDIAP--FSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSS  149 (263)
Q Consensus        77 ~~~~~i~~~l--~~---~~~~~~~--~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~  149 (263)
                      +..+++++++  +|   ++   ++  |+++||||+++|++|..  +++++++.+++++++++.. ..+++||+||.++|+
T Consensus       119 e~l~~Iv~Gi~e~~~~~~~---aGvg~~LVGGeTae~p~l~~~--~~i~~t~vGiV~~~~ii~~-~~ak~GD~IIgl~Ss  192 (394)
T 3kiz_A          119 EVLAAIINGTEEVLQMLRD---NGIGIYSTGGETADVGDLVRT--IIVDSTVTCRMKRQDVISN-ENIKAGNVIVGFASY  192 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---TTCCEEEEEEEEEECTTTBSS--EEEEEEEEEEEEGGGCCCG-GGCCTTCEEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHHHH---hCCCceEEeeeeeEcCCcccC--ccEEEEEEEEEccCccccc-ccCCCCCEEEEECCc
Confidence            7888888887  44   45   76  89999999999999876  4566788999988888887 678999999999999


Q ss_pred             C-----------CCccccceeEEE
Q psy13615        150 G-----------IHSNGFSLVLCF  162 (263)
Q Consensus       150 G-----------~~~~g~Sl~~ai  162 (263)
                      |           +|+||||+.|.+
T Consensus       193 G~~~~~~~~~~~~HSNG~SLvRk~  216 (394)
T 3kiz_A          193 GQTSYETEYNGGMGSNGLTSARHD  216 (394)
T ss_dssp             BCCTTCSSCBCCCTTSSHHHHHHH
T ss_pred             ccccccccccCCccchHHHHHHHH
Confidence            9           699999997764

>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}

Probab=99.29  E-value=1.1e-13  Score=129.34  Aligned_cols=138  Identities=15%  Similarity=0.110  Sum_probs=108.0

Q ss_pred             ccEEEEEcCc---chhHHHHHHHhc-----cccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC------CH
Q psy13615         11 KRVAVLISGT---GTNLKSLLEATS-----NRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL------IL   76 (263)
Q Consensus        11 ~riavl~SG~---Gsnl~al~~~~~-----~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~------~~   76 (263)
                      .+-.+|+|++   ||+++-..+...     .++..++.+.++++.||-.|.|.+       |.+++++ .++      ..
T Consensus        46 ~~~pvLv~~tDGVGTKl~lA~~~~k~~g~~~~~~tIG~daVamnVNDIaamGA~-------Pl~~L~~-a~g~l~~~~~~  117 (389)
T 3mdo_A           46 DPEYCNIMHADGAGTKSSLAYMYWKETGDLSVWKGIAQDALIMNIDDLLCVGAV-------DNILVSS-TIGRNKLLVPG  117 (389)
T ss_dssp             CTTEEEEEEEEECTTHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTTTCC-------SSEEEEE-EEEECTTTSCH
T ss_pred             CCCceEEEecCCCcHHHHHHHHhhhhccccchHHHHHhHheEeeHHHHHhCcCC-------hHHHHHh-hcCcCccCCCH
Confidence            3556788877   999987653210     123456789999999999999987       9988876 331      23


Q ss_pred             HHHHHHHHHh--cc---ccCCCCc--eeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCC
Q psy13615         77 SNSLQVMQKV--GA---KYSDIAP--FSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSS  149 (263)
Q Consensus        77 ~~~~~i~~~l--~~---~~~~~~~--~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~  149 (263)
                      +..+++++++  .|   ++   ++  |+++||||+++|+++...  .+++++.|++++++++.. ..+++||+||.++|+
T Consensus       118 e~l~~Iv~Gi~e~c~~~~~---aGigv~LVGGeTae~p~l~~~~--~v~~t~vGiV~~~~ii~~-~~ak~GD~IIgl~S~  191 (389)
T 3mdo_A          118 EVISAIINGTDELLAELRE---MGVGCYATGGETADVGDLVRTI--IVDSTVTCRMKRSDVIDN-KNIQGGDVIVGLASS  191 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---TTCCEEEEEEEEEECTTTBSSE--EEEEEEEEEEEGGGCCCG-GGCCTTCEEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHHHH---hCCCcEEeCccceECCCcccCc--cEEEEEEEEEcccccccc-ccCCCCCEEEEECCc
Confidence            7888888887  34   35   65  999999999999988764  456788999988888886 678999999999999


Q ss_pred             C-----------CCccccceeEEE
Q psy13615        150 G-----------IHSNGFSLVLCF  162 (263)
Q Consensus       150 G-----------~~~~g~Sl~~ai  162 (263)
                      |           +|+||||+.|.+
T Consensus       192 G~~~~~~~~~~~~HSNG~SLvRk~  215 (389)
T 3mdo_A          192 GQATYEKEYNGGMGSNGLTSARHD  215 (389)
T ss_dssp             BCCTTCSSCBCCCCSSSHHHHHHH
T ss_pred             ccccccccccCCccccHHHHHHHH
Confidence            9           599999997764

>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2

Probab=99.10  E-value=2.6e-10  Score=106.89  Aligned_cols=110  Identities=30%  Similarity=0.482  Sum_probs=89.8

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK  219 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~  219 (263)
                      +.++|+-.-.|   .++++. ++.||+.+.+++..++|++.++.+.++++|+|+.++|.+ ++++..+++ +++..++++
T Consensus       184 ~~vlvEe~i~G---~E~sv~-~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~-l~~~~~~~i-~~~a~~~~~  257 (412)
T 1vkz_A          184 GPVVIDEFLAG---NELSAM-AVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVE-IPSDTIKKI-EELFDKTLW  257 (412)
T ss_dssp             SCEEEEECCCS---EEEEEE-EEEETTEEEECCCCEECCEEETTTEEEECSCSEEEECCC-CCHHHHHHH-HHHHHHHHH
T ss_pred             CeEEEEECCcC---cEEEEE-EEECCCEEEEeeeeEeeeeccCCCCCCCCCCceEEECCC-CCHHHHHHH-HHHHHHHHH
Confidence            35666543345   357764 666887666666668899999999999999999999998 789988888 689999999


Q ss_pred             HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      +|..+|..|.|+++++++.+        ..|+.++|+|+|+|++
T Consensus       258 ~l~~~g~~~~G~~~ve~~~~--------~~g~~viEiN~R~g~~  293 (412)
T 1vkz_A          258 GVEKEGYAYRGFLYLGLMLH--------DGDPYILEYNVRLGDP  293 (412)
T ss_dssp             HHHHTTCCCEEEEEEEEEEE--------TTEEEEEEEESSCCTT
T ss_pred             HHHhcCCCcEEEEEEEEEEE--------CCCcEEEEEecCCCCC
Confidence            99999999999999999944        4446789999999985

>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A

Probab=99.05  E-value=3.2e-10  Score=106.13  Aligned_cols=112  Identities=38%  Similarity=0.560  Sum_probs=91.2

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK  219 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~  219 (263)
                      +.++|+-.-.|   .++++. ++.+|..+.+++..++|+++++.+.++++|+|+.++|.+.++++..+++.+++..++++
T Consensus       180 ~~~lvEe~i~g---~E~sv~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~  255 (424)
T 2yw2_A          180 ERVVIEEFLEG---EEASYI-VMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIK  255 (424)
T ss_dssp             SSEEEEECCCS---EEEEEE-EEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHH
T ss_pred             CeEEEEECCCC---cEEEEE-EEEcCCEEEeecceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHH
Confidence            34555433344   357764 66688767677778889999999999999999999999878999998887788999999


Q ss_pred             HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      .|.++++.|.|+++++++.+        ..|+.++|+|+|+|+|
T Consensus       256 ~l~~~g~~~~G~~~ve~~~~--------~~g~~viEiN~R~g~~  291 (424)
T 2yw2_A          256 GLKEEGIYYRGFLYAGLMIT--------KEGPKVLEFNVRLGDP  291 (424)
T ss_dssp             HHHHHTCCCEEEEEEEEEEE--------TTEEEEEEEESSCCTT
T ss_pred             HHHHcCCCceeEEEEEEEEe--------CCCcEEEEEecCCCCc
Confidence            99999999999999999954        3445688999999986

>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*

Probab=99.05  E-value=1.6e-10  Score=108.10  Aligned_cols=112  Identities=40%  Similarity=0.608  Sum_probs=91.2

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK  219 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~  219 (263)
                      +.++|+-.-.|   .++++. ++.+|..+.+++.+++|+++++.+.++++|+|+.++|.+.++++..+++.+++..++++
T Consensus       180 ~~~lvEe~i~g---~E~sv~-~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~  255 (422)
T 2xcl_A          180 ASVVIEEYLSG---EEFSLM-AFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAK  255 (422)
T ss_dssp             SSEEEEECCCS---EEEEEE-EEEETTEEEECCCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHH
T ss_pred             CeEEEEECCcC---cEEEEE-EEEcCCEEEecceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHH
Confidence            34555433344   357764 66688766667778888999999999999999999999878999999888789999999


Q ss_pred             HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      .|.++++.|.|+++++++.+        ..|+.++|+|+|+|+|
T Consensus       256 ~l~~~g~~~~G~~~vd~~~~--------~~g~~viEiN~R~g~~  291 (422)
T 2xcl_A          256 AMVQEGRSFTGVLYAGLMLT--------ENGSKVIEFNARFGDP  291 (422)
T ss_dssp             HHHHTTCCCEEEEEEEEEEE--------TTEEEEEEEESSCCTT
T ss_pred             HHHHcCCCcEEEEEeeEEEe--------CCCcEEEEEecCCCCc
Confidence            99999999999999999954        3445788999999986

>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A

Probab=99.04  E-value=3.7e-10  Score=106.98  Aligned_cols=112  Identities=38%  Similarity=0.621  Sum_probs=91.0

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK  219 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~  219 (263)
                      +.++|+-.-.|   .++++. ++.+|..+.+++.+++|+++++.+.++++|+|+.++|.+.++++..+++.+++..++++
T Consensus       201 ~~~lvEe~i~G---~E~sv~-~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~  276 (451)
T 2yrx_A          201 SQVVIEEYLEG---EEFSFM-AFVNGEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAK  276 (451)
T ss_dssp             CCEEEEECCCS---EEEEEE-EEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHH
T ss_pred             CeEEEEECCcC---cEEEEE-EEEcCCEEEEeeeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHH
Confidence            34555433344   357764 66688766677778888999999999999999999999878999988887788999999


Q ss_pred             HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      .|...++.|.|+++++++.+        ..|+.++|+|+|+|+|
T Consensus       277 ~l~~~g~~~~G~~~ve~~~~--------~~g~~viEiN~R~g~~  312 (451)
T 2yrx_A          277 ALAAEGRPFLGVLYAGLMAT--------ANGPKVIEFNARFGDP  312 (451)
T ss_dssp             HHHHTTCCCEEEEEEEEEEE--------TTEEEEEEEESSCCTT
T ss_pred             HHHHcCCCceeEEEEEEEEe--------CCCcEEEEEecCCCCc
Confidence            99999999999999999954        4455788999999986

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}

Probab=99.03  E-value=2.6e-10  Score=107.91  Aligned_cols=111  Identities=45%  Similarity=0.711  Sum_probs=91.3

Q ss_pred             cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHH
Q psy13615        141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKK  220 (263)
Q Consensus       141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~  220 (263)
                      .++|+-.-.|   .++++. ++.+|+.+..++..++|++.++.+.++++|+|+.++|.+.++++..+++.+++..++++.
T Consensus       208 ~~lvEe~i~G---~E~sv~-~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~  283 (452)
T 2qk4_A          208 TIVIEELLDG---EEVSCL-CFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDG  283 (452)
T ss_dssp             CEEEEECCCS---EEEEEE-EEECSSCEEECCCBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHH
T ss_pred             eEEEEECCCC---CeEEEE-EEECCCEEEEcceeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHH
Confidence            4555433344   357764 566877677788888899999999999999999999999889999988877889999999


Q ss_pred             HHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        221 MIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       221 ~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      |..+++.|.|+++++++.+        ..|+.++|+|+|+|+|
T Consensus       284 l~~~g~~~~G~~~ve~~~~--------~~g~~viEiN~R~~~~  318 (452)
T 2qk4_A          284 MQQEGTPYTGILYAGIMLT--------KNGPKVLEFNCRFGDP  318 (452)
T ss_dssp             HHHTTCCCCEEEEEEEEEE--------TTEEEEEEEESSCCTT
T ss_pred             HHHcCCCceeEEEEEEEEe--------CCCcEEEEEeccCCCc
Confidence            9999999999999999944        4456789999999986

>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}

Probab=99.03  E-value=7.7e-10  Score=103.44  Aligned_cols=111  Identities=35%  Similarity=0.562  Sum_probs=90.2

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK  219 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~  219 (263)
                      +.++|+-.-.|   .++++. ++.+|+.+..+++.++|++.++.+.++++|+|+.++|.+ ++++..+++.+.+..++++
T Consensus       175 ~~~lvEe~i~g---~E~sv~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~~~~~~~~~~~~  249 (417)
T 2ip4_A          175 GEVVVEEYLEG---EEATVL-ALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYP-MDEATLRRVEEEILGPLVR  249 (417)
T ss_dssp             CCEEEEECCCS---CEEEEE-EEESSSCEEECCCBEECCEEETTTEEEECSCSEEEESCC-CCHHHHHHHHHHTHHHHHH
T ss_pred             CeEEEEECccC---cEEEEE-EEEeCCEEEEcchheechhhccCCCCCcCCCCeeeeCCC-CCHHHHHHHHHHHHHHHHH
Confidence            44555433344   357764 666877677777788899999999999999999999998 7888888887788899999


Q ss_pred             HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      .|.+.|+.|.|+++++++.+.        .|+.++|+|+|+|+|
T Consensus       250 ~l~~~g~~~~G~~~ve~~~~~--------~g~~viEiN~R~g~~  285 (417)
T 2ip4_A          250 GLRAEGVVYRGVVYAGLMLTR--------EGPKVLEFNARFGDP  285 (417)
T ss_dssp             HHHHTTCCCCEEEEEEEEECS--------SCEEEEEEESSCCTT
T ss_pred             HHHHcCCCceEEEEEEEEEeC--------CCeEEEEEecCCCCc
Confidence            999999999999999999554        345688999999986

>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1

Probab=98.93  E-value=5e-11  Score=106.26  Aligned_cols=84  Identities=19%  Similarity=0.075  Sum_probs=66.7

Q ss_pred             cCCCcEEEeeeeeE----EeecCCcCCccccccCCcEEEEecCCCCCccccce-eEEEecCcceeecCCccccccccCCC
Q psy13615        110 YQPGDYDLAGFAVG----AVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNND  184 (263)
Q Consensus       110 ~~~d~i~LAG~m~~----~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d  184 (263)
                      +++|++++||||+.    +++...++|+|||+        ||.    ++|.++ +|++.+|  .+.+|+| .|    +.|
T Consensus        76 ~~pDliv~~~y~~ilp~~il~~~g~iNiHpSL--------LP~----yRG~~pi~~Ai~~G--~~~tGvT-ih----~~~  136 (260)
T 1zgh_A           76 INPEYILFPHWSWIIPKEIFENFTCVVFHMTD--------LPF----GRGGSPLQNLIERG--IKKTKIS-AI----KVD  136 (260)
T ss_dssp             HCCSEEEESSCCSCCCHHHHTTSCEEEEESSC--------TTT----TEESCHHHHHHHTT--CCEEEEE-EE----ECC
T ss_pred             cCCCEEEEeccccccCHHHHccCCEEEEeCCc--------CCC----CCCcCHHHHHHHcC--CCcEEEE-EE----EEc
Confidence            78999999999984    23345689999999        998    344444 5567766  4569999 46    999


Q ss_pred             CCCCCCCeeEECcccCCCHHHHHHHHHHHH
Q psy13615        185 KGPNTGGMGAYCPCDILTEAQKKEIHDTIL  214 (263)
Q Consensus       185 ~G~dTGgmga~~pv~i~~~~~~~~i~~~il  214 (263)
                      +|.|||+|.+|.++|+.  |+.+++.+++.
T Consensus       137 ~~lDtG~Ii~Q~~v~I~--dt~~~L~~rl~  164 (260)
T 1zgh_A          137 GGIDTGDIFFKRDLDLY--GTAEEIFMRAS  164 (260)
T ss_dssp             SSSSCSCEEEEEEEECC--SCHHHHHHHHH
T ss_pred             cCccCCCeEEEEEEecc--CCHHHHHHHHH
Confidence            99999999999999986  78888877654

>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A

Probab=98.80  E-value=1.1e-09  Score=101.30  Aligned_cols=134  Identities=38%  Similarity=0.590  Sum_probs=107.3

Q ss_pred             EEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--HHHHHHHHHHh--cc
Q psy13615         13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--LSNSLQVMQKV--GA   88 (263)
Q Consensus        13 iavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--~~~~~~i~~~l--~~   88 (263)
                      +++-.-+-|+.|....  .......++.+.+++..|+-.|.|.+       |.++++...+++  .+..+++++++  +|
T Consensus        64 lv~~tD~~g~~~~~a~--~~~~~~~iG~~aVa~~vsDiaamGA~-------P~~~l~~l~~~~~~~~~l~~i~~Gi~~~~  134 (349)
T 3p4e_A           64 LVSGTDGVGTKLRLAL--DMKKHDTIGIDLVAMCVNDLIVQGAE-------PLFFLDYYATGKLDVDTAAEVISGIADGC  134 (349)
T ss_dssp             EEEEEECCTHHHHHHH--HTTCCSSHHHHHHHHHHHHHHTTTCE-------EEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcchhHHH--hcCCHHHHHHHHHHHHHHHHHHcCCc-------HHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence            3334445588886443  12234456778888999998899888       999988766543  37888899988  77


Q ss_pred             ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCcccccee
Q psy13615         89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV  159 (263)
Q Consensus        89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~  159 (263)
                      ++   ++|.++||+|+..|+.|....+.++||+.|++++.+++.. ...++||+|+.+.+.|.|+.|+++.
T Consensus       135 ~~---~g~~lvGGdT~~~~~~~~~~~~~l~gt~vG~v~~~~~~~~-~~a~~GD~Ii~tg~~G~~~~g~~l~  201 (349)
T 3p4e_A          135 LQ---AGCALIGGETAEMPGMYEGEDYDVAGFCVGVVEKEEIIDG-SKVQVGDALIAVGSSGPHSNGYSLV  201 (349)
T ss_dssp             HH---HTCEEEEEEEEECBTTBCTTCEEEEEEEEEEEEGGGCCCS-TTCCTTCEEEEEECSSSTTSSHHHH
T ss_pred             HH---cCCEEEcceeEECCCcccCCcccEEEEEEEEEcCcccccC-CCCCCCCEEEEcCCcchhhhHHHHH
Confidence            88   9999999999999999988888999999999987777776 6678999999999999999887763

>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A*

Probab=98.78  E-value=1e-09  Score=101.50  Aligned_cols=135  Identities=27%  Similarity=0.479  Sum_probs=108.1

Q ss_pred             EEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--HHHHHHHHHHh--cc
Q psy13615         13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--LSNSLQVMQKV--GA   88 (263)
Q Consensus        13 iavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--~~~~~~i~~~l--~~   88 (263)
                      +++-.-+-|+++.-..  ....+..++.+.+++..|+-.|.|.+       |.++++...+++  .+..+++++++  +|
T Consensus        63 lv~stD~~~~k~~~a~--~~~~~~~iG~~ava~~vsDiaamGA~-------P~~~l~~l~~~~~~~~~l~~i~~Gi~~~~  133 (350)
T 3m84_A           63 LVQSIDGVGTKTKVAV--MCGKFENLGYDLFSAATNDIVVMGAK-------PITFLDYVAHDKLDPAIMEELVKGMSKAC  133 (350)
T ss_dssp             EEEEEECCTTHHHHHH--HHTCCHHHHHHHHHHHHHHHHTTTCE-------EEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEcCcCCchHHHHH--HhCCHHHHHHHHHHHHHHHHHHcCCc-------HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            4555556688875433  11233345677888888998888888       999988766653  37888999998  78


Q ss_pred             ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccceeE
Q psy13615         89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVL  160 (263)
Q Consensus        89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~~  160 (263)
                      ++   ++|.++||+|+..|+.|....+.++|++.|++++.+++.. ...++||+|+.+.+.|.|+.++++.+
T Consensus       134 ~~---~g~~lvGGdT~~~p~~~~~~~~~l~gt~vG~v~~~~~l~~-~~a~~GD~Ii~tg~~G~~~~g~~l~r  201 (350)
T 3m84_A          134 AE---CGVSLVGGETAEMPGVYQAGEIDMVGVITGIVDRKRIING-ENIKEGDIVFGLSSSGLHTNGYSFAR  201 (350)
T ss_dssp             HH---TTCEEEEEEEEECTTTBCTTCEEEEEEEEEEEEGGGCCCS-TTCCTTCEEEEEECSSSTTSSHHHHH
T ss_pred             HH---hCCeEEeeeeeEcCCcccCCcccEEEEEEEEEeCCccccc-ccCCCCCEEEEecCchHHHHHHHHHH
Confidence            88   9999999999999999988888999999999987777776 66789999999999999998887643

>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis}

Probab=98.35  E-value=8.8e-08  Score=88.10  Aligned_cols=131  Identities=37%  Similarity=0.597  Sum_probs=99.2

Q ss_pred             EcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--HHHHHHHHHHh--ccccCC
Q psy13615         17 ISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--LSNSLQVMQKV--GAKYSD   92 (263)
Q Consensus        17 ~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--~~~~~~i~~~l--~~~~~~   92 (263)
                      ..+-|+++.-..+  ......++.+.+++..|+-.|.|.+       |.++++...+++  .+..+++++++  +|++  
T Consensus        61 tD~~~~~~~~~~~--~~~~~~iG~~ava~~vsDi~a~Ga~-------P~~~l~~l~~~~~~~~~l~~i~~Gi~~~~~~--  129 (346)
T 2btu_A           61 TDGVGTKLMLAFM--ADKHDTIGIDAVAMCVNDIVVQGAE-------PLFFLDYIACGKAEPSKIENIVKGISEGCRQ--  129 (346)
T ss_dssp             EEECCTTHHHHHH--HCCCSSHHHHHHHHHHHHHHTTTCE-------EEEEEEEEEESSCCHHHHHHHHHHHHHHHHH--
T ss_pred             cccCCchHHHHHH--hcCcchHHHHHHHHHHHHHHHcCCC-------hHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--
Confidence            3344666543331  1223445567777777887788877       998888766543  37788888888  7787  


Q ss_pred             CCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccceeE
Q psy13615         93 IAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLVL  160 (263)
Q Consensus        93 ~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~~  160 (263)
                       ++|.++||+|...|++|+.+-+.+++++.|++++.+++.. ...++||+|+.+.+.|.|+.|+++.+
T Consensus       130 -~g~~lvGGdt~~~~~~y~~~~~~i~~t~vG~v~~~~~~~~-~~a~~GD~ii~~g~~G~~~~g~~l~~  195 (346)
T 2btu_A          130 -AGCALIGGETAEMPGMYSTEEYDLAGFTVGIVDKKKIVTG-EKIEAGHVLIGLASSGIHSNGYSLVR  195 (346)
T ss_dssp             -HTCEEEEEEEEECSTTSCSSCEEEEEEEEEEEETTSCCCS-TTCCTTCEEEEEECSSSTTSCHHHHH
T ss_pred             -hCCeEeeeEEEEcCCcccCCCccEEEEEEEEEccccccCc-cCCCCCCEEEEECCchhhhhHHHHHH
Confidence             9999999999999999987778899999998887677665 45679999999999999998876543

>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}

Probab=98.27  E-value=1.4e-07  Score=86.76  Aligned_cols=134  Identities=39%  Similarity=0.589  Sum_probs=93.1

Q ss_pred             EEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--HHHHHHHHHHh--cc
Q psy13615         13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--LSNSLQVMQKV--GA   88 (263)
Q Consensus        13 iavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--~~~~~~i~~~l--~~   88 (263)
                      +++-..+-|+++.-...  ......++...+++..|+-.|.|.+       |.++++...+++  .+..+++++++  +|
T Consensus        59 lv~stD~~~~~~~~~~~--~~~~~~iG~~ava~~vsDlaa~Ga~-------P~~~~~~l~~~~~~~~~l~~i~~Gi~~~~  129 (348)
T 2z01_A           59 LISGTDGVGTKLKLAFL--LDRHDTIGIDCVAMCVNDIIVQGAE-------PLFFLDYIACGKAVPEKIAAIVKGVADGC  129 (348)
T ss_dssp             EEEEEEECCTHHHHHHH--HTCCSSHHHHHHHHHHHHHHTTTCE-------EEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             eeeecccccchHHHHHH--hCCHHHHHHHHHHHHHHHHHhcCCC-------hHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            44444444776543221  1233445667777778887788877       988887765543  37788888888  77


Q ss_pred             ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCcccccee
Q psy13615         89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV  159 (263)
Q Consensus        89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~  159 (263)
                      ++   ++|.++||+|...|++|+.+-+.+++++.|.+++.+++.. ...++||+|+.+.+.|.|+.++++.
T Consensus       130 ~~---~g~~lvGGdt~~~~~~y~~~~~~i~~t~vG~v~~~~~l~~-~~a~~GD~ii~~g~~G~~~~g~~l~  196 (348)
T 2z01_A          130 VE---AGCALIGGETAEMPGMYDEDEYDLAGFAVGVAEKERLITG-ETIQAGDALVGLPSSGLHSNGYSLV  196 (348)
T ss_dssp             HH---HTCEEEECCEEC--------CEEEEEEEEEEEEGGGCCCS-TTCCTTCEEEEEECSSSTTSCHHHH
T ss_pred             HH---cCCEEECceeeecCCcccCCCeeEEEEEEEEEccccccCc-cCCCCCCEEEEECCchHHHhHHHHH
Confidence            87   9999999999999999988778899999998886666665 4567999999998899998887654

>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}

Probab=98.22  E-value=3.2e-07  Score=84.18  Aligned_cols=131  Identities=41%  Similarity=0.645  Sum_probs=98.7

Q ss_pred             EcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCC--HHHHHHHHHHh--ccccCC
Q psy13615         17 ISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLI--LSNSLQVMQKV--GAKYSD   92 (263)
Q Consensus        17 ~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~--~~~~~~i~~~l--~~~~~~   92 (263)
                      ..+.++++.-....  .....++...+++..|+-.|.|.+       |.++++...+.+  .+..+++++++  +|++  
T Consensus        33 ~D~~v~~~~~a~~~--d~~~~iG~~ava~~vsDiaamGA~-------P~~~l~~l~~~~~~~~~l~~i~~Gi~~~~~~--  101 (334)
T 2v9y_A           33 TDGVGTKLKIAQLC--NKHDTIGQDLVAMCVNDILAQGAE-------PLFFLDYFSCGKLDLSVTEAVVAGIAKACGK--  101 (334)
T ss_dssp             EECCTTHHHHHHHH--TCCTTHHHHHHHHHHHHHHTTTCE-------EEEEEEEEEESSCCHHHHHHHHHHHHHHHHH--
T ss_pred             cCcCCcchhhheec--CCHHHHHHHHHHHHHHHHHHCCCc-------HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--
Confidence            33446665433221  123445667777888888888877       998888655543  37788899988  7787  


Q ss_pred             CCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCcccccee
Q psy13615         93 IAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSLV  159 (263)
Q Consensus        93 ~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl~  159 (263)
                       ++|.++||+|.+.|++|....+++++++.|++++.+++..+...++||+|+...+.|.|+.++++.
T Consensus       102 -~g~~lvGGdT~~~~~~y~~~~~~i~~t~vG~v~~~~~~~~~~~a~~GD~Ii~~g~~G~~~~g~~~~  167 (334)
T 2v9y_A          102 -AGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHLERITEGDVVVGIASSGLHSNGFSLV  167 (334)
T ss_dssp             -HTCEEEEEEEEECTTTSCTTCEEEEEEEEEEEEGGGCSCCGGGCCTTCEEEEEECSSSTTSSHHHH
T ss_pred             -hCCeEEeEEeEEcCCcccCCceeEEEEEEEEEccccccccccCCCCCCEEEEECCccHHHHHHHHH
Confidence             999999999999999998888889999999888666665423468999999998899998877653

>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis}

Probab=97.46  E-value=1.4e-05  Score=72.44  Aligned_cols=104  Identities=15%  Similarity=0.149  Sum_probs=76.3

Q ss_pred             EEEEEecCCCChhhHHHHHcCCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEE
Q psy13615         42 IVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYD  116 (263)
Q Consensus        42 iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~  116 (263)
                      .+++..|+-.|.|.+       |.++.+...+.   +.+..+++++++  +|++   +++.++||+|...|+. ..|...
T Consensus        53 ava~~~sDiaamGA~-------P~~~~~~l~~p~~~~~~~l~~i~~Gi~~~~~~---~g~~lvGGdt~~~~~g-~~~~~~  121 (314)
T 3vti_C           53 AVCGTVNDASMRGAK-------PLFLTAAFIIEEGFPVEDLKKIVKSMAEAAKE---AGVKIVAGDTKVVEKG-SVDRIF  121 (314)
T ss_dssp             HHHHHHHHTTTTTEE-------EEEEEEEEEEETTCCHHHHHHHHHHHHHHHHH---HTCEEEEEEEEEECTT-SBSSEE
T ss_pred             HHHHHHHHHHHcCCc-------cceeEEEEEcCCCCCHHHHHHHHHHHHHHHHH---cCCeEEeeeeEEccCC-CcCCeE
Confidence            344455566667766       88777654332   347888889988  7777   9999999999998731 234577


Q ss_pred             EeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCccccc
Q psy13615        117 LAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFS  157 (263)
Q Consensus       117 LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~S  157 (263)
                      +++++.|++++.+++.. ...++||+|+...+.|.|+.+++
T Consensus       122 i~~t~vG~v~~~~~~~~-~~a~~GD~i~~tg~~G~~~~~~~  161 (314)
T 3vti_C          122 INTSGIGVLYEGANVSI-KNAKPGDIVLISGTIGDHGMAVM  161 (314)
T ss_dssp             EEEEEEEEECTTCCCCT-TCCCTTCEEEESSCSSHHHHHHH
T ss_pred             EEEEEEEEECCCccccc-cCCCCCCEEEEECChHHHHHHHH
Confidence            88889998886666665 55789999999988888865544

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=97.39  E-value=0.00018  Score=67.01  Aligned_cols=87  Identities=8%  Similarity=0.012  Sum_probs=53.1

Q ss_pred             cccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Q psy13615        154 NGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKK  233 (263)
Q Consensus       154 ~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~  233 (263)
                      .++++. .+.++.++...|++..+.+     .|.   -.....|.+.++++..+++. ++..++++.|     .|.|++.
T Consensus       208 ~E~sv~-v~~~~~g~~~~p~~~~~~~-----~g~---~~~~~~Pa~~l~~~~~~~~~-~~a~~i~~~L-----g~~G~~~  272 (403)
T 3k5i_A          208 MELAVI-VVKTKDEVLSYPTVETVQE-----DSI---CKLVYAPARNVSDAINQKAQ-ELARKAVAAF-----DGKGVFG  272 (403)
T ss_dssp             EEEEEE-EEECSSCEEECCCEEEEEE-----TTE---EEEEEESCSSCCHHHHHHHH-HHHHHHHHTS-----CCSEEEE
T ss_pred             eEEEEE-EEEcCCCEEEeCCeeeEEe-----CCE---EEEEEeCCCCCCHHHHHHHH-HHHHHHHHHc-----CCeeEEE
Confidence            456663 5555555556666532211     011   12356677756787777774 4554554444     5799999


Q ss_pred             eccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        234 RGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       234 ~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      +.++.+..+       .+.++|+|+|+|+
T Consensus       273 ve~~~~~dg-------~~~v~EiNpR~~~  294 (403)
T 3k5i_A          273 VEMFLLEDD-------SIMLCEIASRIHN  294 (403)
T ss_dssp             EEEEEETTS-------CEEEEEEESSCCG
T ss_pred             EEEEEeCCC-------cEEEEEeecCCCC
Confidence            999954322       1568999999986

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}

Probab=97.31  E-value=0.00048  Score=62.77  Aligned_cols=99  Identities=14%  Similarity=0.118  Sum_probs=66.2

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcc-eeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKT-VKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI  218 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~-~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i  218 (263)
                      ..++|+-.-.+  +.++++. .+.++++ +..++++++|++....+        ..++|.+.++++..+++ .++..+++
T Consensus       167 ~~~lvEe~i~~--g~e~sv~-~~~d~~G~~~~~~~~~~~~~~~~~~--------~~~~p~~~l~~~~~~~~-~~~a~~~~  234 (369)
T 3aw8_A          167 RGLILEGFVPF--DREVSLL-AVRGRTGEVAFYPLVENRHWGGILR--------LSLAPAPGASEALQKKA-EAYALRAM  234 (369)
T ss_dssp             SSEEEEECCCC--SEEEEEE-EEECTTSCEEECCCEEEEEETTEEE--------EEEESCTTCCHHHHHHH-HHHHHHHH
T ss_pred             CcEEEEEcCCC--CEEEEEE-EEECCCCCEEEECCeeeeeeCCEEE--------EEECCCCCCCHHHHHHH-HHHHHHHH
Confidence            44555433331  3457764 6676553 55678877665432221        36778876788888888 57777777


Q ss_pred             HHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        219 KKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       219 ~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      ++|     .|+|+++++++.+.        .++.++|+|+|+|++
T Consensus       235 ~~l-----g~~G~~~vd~~~~~--------~~~~viEiN~R~~~~  266 (369)
T 3aw8_A          235 EAL-----DYVGVLALEFFQVG--------EELLFNEMAPRVHNS  266 (369)
T ss_dssp             HHH-----TCCEEEEEEEEEET--------TEEEEEEEESSCCGG
T ss_pred             HHC-----CCeeEEEEEEEEEC--------CcEEEEEEeCCcCCc
Confidence            777     46899999999543        345789999999864

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=97.13  E-value=0.00077  Score=61.65  Aligned_cols=99  Identities=12%  Similarity=0.052  Sum_probs=61.5

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcc-eeecCCcccc--ccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKT-VKVMPPSQDH--KRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMR  216 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~-~~~~~~t~dh--kr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~  216 (263)
                      +.++|+-.-.+  +.++++. .+.++++ +..++++++|  ++.+..        -..++|.+ ++++..+++ .++..+
T Consensus       164 ~~~lvEe~i~~--g~e~sv~-~~~~~~G~~~~~~~~~~~~~~~~~~~--------~~~~~p~~-l~~~~~~~~-~~~a~~  230 (380)
T 3ax6_A          164 GETYLEEFVEI--EKELAVM-VARNEKGEIACYPVVEMYFDEDANIC--------DTVIAPAR-IEEKYSKIA-REIATS  230 (380)
T ss_dssp             SSEEEEECCCE--EEEEEEE-EEECSSCCEEEEEEEEEC----------------CEEEESCS-SCHHHHHHH-HHHHHH
T ss_pred             CCEEEEeccCC--CeeEEEE-EEECCCCCEEEECCeeeeecccCCee--------EEEECCCC-CCHHHHHHH-HHHHHH
Confidence            55666433332  3457764 5665443 4566777655  322111        13567777 677777777 477777


Q ss_pred             HHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        217 VIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       217 ~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      ++++|     .|.|++.++++.+..+       .+.++|+|+|+|++
T Consensus       231 ~~~~l-----g~~G~~~vd~~~~~~g-------~~~viEiN~R~~~~  265 (380)
T 3ax6_A          231 VVEAL-----EGVGIFGIEMFLTKQG-------EILVNEIAPRPHNS  265 (380)
T ss_dssp             HHHHH-----TCCEEEEEEEEEETTS-------CEEEEEEESSCCGG
T ss_pred             HHHHC-----CCeEEEEEEEEEeCCC-------cEEEEEecCCCCCC
Confidence            77777     4689999999954322       15789999999974

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=97.09  E-value=0.00094  Score=60.69  Aligned_cols=81  Identities=17%  Similarity=0.102  Sum_probs=54.7

Q ss_pred             ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEee
Q psy13615        155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKR  234 (263)
Q Consensus       155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~  234 (263)
                      ++++. .+.|+.+..+++.+++|        ..+++++..+.|.+. .++ .+++..++.         +.+.|.|++++
T Consensus       167 e~sv~-~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~p~~~-~~~-~~~~a~~~~---------~~l~~~G~~~v  226 (363)
T 4ffl_A          167 VVSLE-VVGDGSHFAVVKETLVH--------IDETYDCHMVTPLPA-NPL-FRQISHDLA---------ANLPLKGIMDV  226 (363)
T ss_dssp             EEEEE-EEEESSCEEECCCEEEE--------ECTTSCEEEEEECCC-CHH-HHHHHHHHH---------HTTTCEEEEEE
T ss_pred             EEEEE-EEEECCeEEEEEEEEec--------cCCcccceeecchhH-HHH-HHHHHHHHH---------HhCCccceeee
Confidence            46653 77788888778777655        346778888888774 222 222222222         35679999999


Q ss_pred             ccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        235 GFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       235 gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      .|+.+        ..++.++|+|+|||++
T Consensus       227 ef~~~--------~~~~~viEiN~R~~g~  247 (363)
T 4ffl_A          227 EAIFG--------PKGLRVIEIDARFPSQ  247 (363)
T ss_dssp             EEEEE--------TTEEEEEEEECSCCSS
T ss_pred             eeEEe--------CCeEEEEEEeCCCCCC
Confidence            99954        4456788999999763

>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}

Probab=96.85  E-value=0.0038  Score=57.96  Aligned_cols=99  Identities=18%  Similarity=0.161  Sum_probs=60.9

Q ss_pred             cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHH
Q psy13615        141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKK  220 (263)
Q Consensus       141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~  220 (263)
                      .++++-.-.|.   ++++. ++.++.....++++..+     ...++....++..+|.+ ++++..+++. ++..++++ 
T Consensus       194 ~~lvEe~i~G~---e~sv~-~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~Pa~-l~~~~~~~i~-~~~~~~~~-  261 (425)
T 3vot_A          194 GIVAEQFIDGP---EFAIE-TLSIQGNVHVLSIGYKG-----NSKGPFFEEGVYIAPAQ-LKEETRLAIV-KEVTGAVS-  261 (425)
T ss_dssp             CEEEEECCCSC---EEEEE-EEEETTEEEEEEEEEEE-----CCCCSBCCCCEEEESCC-CCHHHHHHHH-HHHHHHHH-
T ss_pred             cEEEEEEecCc---EEEEE-EEEeCCcEEEEeEEEEe-----ccCCCccccceEeeccc-CCHHHHHHHH-HHHHHHHH-
Confidence            45554433553   46763 55654555566666422     34567777777888887 4666666664 33334444 


Q ss_pred             HHhcCCCeEEEEeeccccccCCceeeecCc-ceeeeeCCCCCC
Q psy13615        221 MIAEGTPFVGEKKRGFTEGTVTAKVFSSRN-RREKEDNPEEGD  262 (263)
Q Consensus       221 ~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~-~~~~e~n~~~gd  262 (263)
                        ..|+. .|+.+++++.+        ..| +.++|+|+|+|.
T Consensus       262 --alg~~-~G~~~ve~~~~--------~dG~~~~iEiN~R~gG  293 (425)
T 3vot_A          262 --ALGIH-QGPAHTELRLD--------KDGTPYVIEVGARIGG  293 (425)
T ss_dssp             --HTTCC-SEEEEEEEEEC--------TTCCEEEEEEESSCGG
T ss_pred             --HcCCC-cceEEEEEEEE--------eCCcEEEEEEecCCCC
Confidence              33543 49999999954        444 578899999964

>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A*

Probab=96.84  E-value=0.00029  Score=64.48  Aligned_cols=89  Identities=16%  Similarity=0.089  Sum_probs=67.9

Q ss_pred             CCEEEeeCCCCCC---HHHHHHHHHHh--ccccCCCCceeeeccccccCCC-CcCCCcEEEeeeeeEEeecCCcCCcccc
Q psy13615         63 IPTKVSTYKHTLI---LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPG-LYQPGDYDLAGFAVGAVEKASLLPKVKD  136 (263)
Q Consensus        63 IP~~~v~~~~~~~---~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~-~~~~d~i~LAG~m~~~~~~~~~in~hps  136 (263)
                      -|.++++...+.+   .+..+++++++  +|++   +++.++||+|...|+ .|+  ...+++++.|++++.+.+.. ..
T Consensus        88 ~P~~~~~~l~~p~~~~~~~l~~i~~Gi~~~~~~---~g~~lvGGdt~~~~~g~~~--~~~i~~t~vG~v~~~~~~~~-~~  161 (343)
T 2z1u_A           88 RPRYLSCGFILEEGLDMDILERVVASMGKAARE---AGVFIVTGDTKVVPRGACD--KMFINTTGIGEILVDPAPSG-DR  161 (343)
T ss_dssp             EEEEEEEEEEEETTCCHHHHHHHHHHHHHHHHH---HTCEEEEEEEEEECTTSSS--SEEEEEEEEEEECCSSCCCG-GG
T ss_pred             eeHHhheeeecCCCCCHHHHHHHHHHHHHHHHH---hCCEEECcEEEEcCCCCCC--CeEEEEEEEEEECCCccccc-cC
Confidence            4888877765542   37788888888  7777   999999999999873 343  56788889998876666654 45


Q ss_pred             ccCCcEEEEecCCCCCccccc
Q psy13615        137 VAAGDVVIALPSSGIHSNGFS  157 (263)
Q Consensus       137 l~~g~~ii~Lp~~G~~~~g~S  157 (263)
                      .++||+|+.....|.|+.+++
T Consensus       162 a~~GD~I~vtg~~G~~g~~~~  182 (343)
T 2z1u_A          162 ARPGDAILISGSMGDHGLTIL  182 (343)
T ss_dssp             CCTTCEEEECSCSSHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHH
Confidence            689999999888888765544

>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A

Probab=96.70  E-value=0.00045  Score=62.98  Aligned_cols=92  Identities=16%  Similarity=0.129  Sum_probs=68.4

Q ss_pred             CCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccc
Q psy13615         62 GIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD  136 (263)
Q Consensus        62 gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hps  136 (263)
                      +-|.++++...+.   +.+..+++++++  +|++   +++.++||+|...|+- ..+...+++++.|++++.+.+.. ..
T Consensus        87 A~P~~~~~~l~~p~~~~~~~l~~i~~Gi~~~~~~---~g~~lvGGdt~~~~~g-~~~~~~i~~t~vG~v~~~~~~~~-~~  161 (334)
T 2rb9_A           87 AIPRYLSCGFILEEGLPMETLKAVVTSMAETART---AGIAIVTGDTKVVQRG-AADKLFINTAGMGAIPTNIHWGA-QT  161 (334)
T ss_dssp             CCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHHH---TTCEEEEEEEEEECTT-SBSSEEEEEEEEEEECTTCCCCG-GG
T ss_pred             CchHHhEEEEecCCCCCHHHHHHHHHHHHHHHHH---cCCEEEeeEeEEccCC-CCCceEEEEEEEEEECccccccc-cc
Confidence            3488887776552   237788888988  7777   9999999999998721 12356788888998876666654 45


Q ss_pred             ccCCcEEEEecCCCCCccccce
Q psy13615        137 VAAGDVVIALPSSGIHSNGFSL  158 (263)
Q Consensus       137 l~~g~~ii~Lp~~G~~~~g~Sl  158 (263)
                      .++||+|+.....|.|+.+++.
T Consensus       162 a~~GD~Iivtg~~G~~g~~~~~  183 (334)
T 2rb9_A          162 LTAGDILLVSGTLGDHGATILN  183 (334)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHH
T ss_pred             CCCCCEEEEECCchHHHHHHHH
Confidence            6899999998888888665543

>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}

Probab=96.55  E-value=0.0005  Score=62.28  Aligned_cols=86  Identities=13%  Similarity=0.029  Sum_probs=66.9

Q ss_pred             CCCEEEeeCCCCCC--HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccc
Q psy13615         62 GIPTKVSTYKHTLI--LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDV  137 (263)
Q Consensus        62 gIP~~~v~~~~~~~--~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl  137 (263)
                      +-|.++++...+.+  .+..+++++++  +|++   +++.++||+|..-     +  ..+++++.|++++.+++.. ...
T Consensus        78 a~P~~~l~~l~~p~~~~~~l~~i~~Gi~~~~~~---~g~~lvGGdt~~~-----~--~~i~~t~iG~v~~~~~~~~-~~a  146 (319)
T 3mcq_A           78 AQPRWATLTIALPEADEDWISKFAAGFFACAAQ---FDIALIGGDTTRG-----P--LTISVQIMGETPPGASLLR-STA  146 (319)
T ss_dssp             CEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHH---TTCEEEEEEEEES-----S--CEEEEEEEEEECTTCCCCS-SCC
T ss_pred             CchHHhEEEEECCCCCHHHHHHHHHHHHHHHHH---cCCeEEeeEcCCC-----C--eEEEEEEEEeeCCCccccc-CCC
Confidence            45888887765543  37888899988  7777   9999999999962     2  5678888888876677766 567


Q ss_pred             cCCcEEEEecCCCCCccccce
Q psy13615        138 AAGDVVIALPSSGIHSNGFSL  158 (263)
Q Consensus       138 ~~g~~ii~Lp~~G~~~~g~Sl  158 (263)
                      ++||+|+...+.|.|+.++++
T Consensus       147 ~~GD~ii~tg~~G~~~~g~~~  167 (319)
T 3mcq_A          147 RADDDIWVSGPLGDAALALAA  167 (319)
T ss_dssp             CTTEEEEECSCCSHHHHHHHH
T ss_pred             CCCCEEEEECCccHHHHHHHH
Confidence            899999999888888766544

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=96.33  E-value=0.0081  Score=54.76  Aligned_cols=98  Identities=15%  Similarity=0.141  Sum_probs=61.0

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIK  219 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~  219 (263)
                      +.++|+-.-.|  +.++++. .+.++.+....++. +|++.. .+      ....+.|.+ ++++..+++ .++..++++
T Consensus       189 ~~~lvEe~i~~--g~E~sv~-~~~~~~g~~~~~~~-~~~~~~-~~------~~~~~~p~~-l~~~~~~~~-~~~a~~~~~  255 (391)
T 1kjq_A          189 GRVIVEGVVKF--DFEITLL-TVSAVDGVHFCAPV-GHRQED-GD------YRESWQPQQ-MSPLALERA-QEIARKVVL  255 (391)
T ss_dssp             CCEEEEECCCC--SEEEEEE-EEEETTEEEECCCE-EEEEET-TE------EEEEEECCC-CCHHHHHHH-HHHHHHHHH
T ss_pred             CCEEEEEecCC--CeEEEEE-EEEeCCCeEEccCc-ceEEEC-CE------EEEEEeCCC-CCHHHHHHH-HHHHHHHHH
Confidence            34555433332  3457764 66666665555443 454321 11      123556776 577777777 467777777


Q ss_pred             HHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        220 KMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       220 ~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      +|   +  |.|+.+++++.+.        .++.++|+|+|+|++
T Consensus       256 ~l---g--~~G~~~ve~~~~~--------~~~~viEiN~R~~~~  286 (391)
T 1kjq_A          256 AL---G--GYGLFGVELFVCG--------DEVIFSEVSPRPHDT  286 (391)
T ss_dssp             HH---C--SSEEEEEEEEEET--------TEEEEEEEESSCCGG
T ss_pred             Hc---C--CeeEEEEEEEEeC--------CcEEEEEEECCCCCC
Confidence            76   3  7999999999543        355789999999964

>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A

Probab=96.31  E-value=0.00027  Score=64.91  Aligned_cols=85  Identities=18%  Similarity=0.239  Sum_probs=64.9

Q ss_pred             CCCEEEeeCCCCCC---HHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccc
Q psy13615         62 GIPTKVSTYKHTLI---LSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD  136 (263)
Q Consensus        62 gIP~~~v~~~~~~~---~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hps  136 (263)
                      .-|.++++...+++   .+..+++++++  +|++   +++.++||+|.+.+      ...+++++.|+  +++.+.. ..
T Consensus       113 A~P~~~l~~l~~p~~~~~~~l~~i~~Gi~~~~~~---~gv~lvGGdT~~~~------~~~i~vt~vG~--~~~~l~~-~~  180 (342)
T 3c9u_A          113 GLPKWALISLNLPEDLEVSYVERFYIGVKRACEF---YKCEVVGGNISKSE------KIGISVFLVGE--TERFVGR-DG  180 (342)
T ss_dssp             CEEEEEEEEEEECTTSBHHHHHHHHHHHHHHHHH---HTCEEEEEEEEECS------SCEEEEEEEEE--ESSCCCS-SC
T ss_pred             CchHHhEEEEecCCCCCHHHHHHHHHHHHHHHHH---cCCeEEeeEeeecC------CeEEEEEEEEe--cCccccc-cC
Confidence            34888887766653   37788889988  7777   99999999999752      35678888887  3566654 45


Q ss_pred             ccCCcEEEEecCCCCCccccce
Q psy13615        137 VAAGDVVIALPSSGIHSNGFSL  158 (263)
Q Consensus       137 l~~g~~ii~Lp~~G~~~~g~Sl  158 (263)
                      .++||+|+...+.|.|+.|+++
T Consensus       181 a~~GD~IivtG~~G~~~~g~~~  202 (342)
T 3c9u_A          181 ARLGDSVFVSGTLGDSRAGLEL  202 (342)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHH
T ss_pred             CCCCCEEEEECchhHHHHHHHH
Confidence            6899999999888988766655

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=95.94  E-value=0.012  Score=54.61  Aligned_cols=57  Identities=18%  Similarity=0.255  Sum_probs=42.8

Q ss_pred             eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      ++.+.|.+ ++++..+++ .++..+++++|   +  |.|+++++++.+.        .++.++|+|+|+|++
T Consensus       243 ~~~~~p~~-l~~~~~~~i-~~~a~~~~~~l---g--~~G~~~ve~~~~~--------~~~~viEiN~R~~~~  299 (433)
T 2dwc_A          243 HASWQPAE-ISEKAEREV-YRIAKRITDVL---G--GLGIFGVEMFVKG--------DKVWANEVSPRPHDT  299 (433)
T ss_dssp             EEEEESCC-CCHHHHHHH-HHHHHHHHHHH---C--SSEECEEEEEEET--------TEEEEEEEESSCCGG
T ss_pred             EEEEcCCC-CCHHHHHHH-HHHHHHHHHHc---C--CeeEEEEEEEEeC--------CcEEEEEEeCCcCCC
Confidence            55677877 677777777 46777777766   3  7999999999543        355789999999964

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.89  E-value=0.024  Score=52.95  Aligned_cols=97  Identities=14%  Similarity=0.113  Sum_probs=59.7

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcc-eeecCCccccccccCCCCCCCCCCe--eEECcccCCCHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKT-VKVMPPSQDHKRKYNNDKGPNTGGM--GAYCPCDILTEAQKKEIHDTILMR  216 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~-~~~~~~t~dhkr~~~~d~G~dTGgm--ga~~pv~i~~~~~~~~i~~~il~~  216 (263)
                      +.++|+-.-.|  +.++++. .+.++.+ +..+++++.+.+          .|+  .+++|.+.++++..+++. ++..+
T Consensus       207 ~~~lvEe~i~~--~~Eisv~-v~~~~~G~~~~~~~~e~~~~----------~g~~~~~~~Pa~~l~~~~~~~~~-~~a~~  272 (419)
T 4e4t_A          207 VPCVLEKRLPL--KYEVSAL-IARGADGRSAAFPLAQNVHH----------NGILALTIVPAPAADTARVEEAQ-QAAVR  272 (419)
T ss_dssp             CCEEEEECCCE--EEEEEEE-EEECTTSCEEECCCEEEEEE----------TTEEEEEEESCTTCCHHHHHHHH-HHHHH
T ss_pred             CcEEEeecCCC--CeEEEEE-EEEcCCCCEEEEeCeEEEee----------CCeEEEEEcCCCCCCHHHHHHHH-HHHHH
Confidence            34555332232  3456653 5556553 456677653211          122  346677767888877775 56666


Q ss_pred             HHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        217 VIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       217 ~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      ++++|     .|.|++.+.|+.+..+       .+.|+|+|+|+|+
T Consensus       273 i~~~l-----g~~G~~~vE~~~~~dG-------~~~v~EiNpR~~~  306 (419)
T 4e4t_A          273 IADTL-----GYVGVLCVEFFVLEDG-------SFVANEMAPRPHN  306 (419)
T ss_dssp             HHHHH-----TCCEEEEEEEEEETTC-------CEEEEEEESSCCG
T ss_pred             HHHHC-----CCeeEEEEEEEEeCCC-------CEEEEEEeCCCCC
Confidence            66665     4789999999954322       1578999999986

>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A

Probab=95.41  E-value=0.0044  Score=56.21  Aligned_cols=86  Identities=15%  Similarity=0.184  Sum_probs=62.6

Q ss_pred             CCCEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccc
Q psy13615         62 GIPTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKD  136 (263)
Q Consensus        62 gIP~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hps  136 (263)
                      .-|.++.+...+.   +.+..+++++++  .|++   +++.++||+|...|+..   .+.+++++.|.+++. . .. ..
T Consensus        90 a~P~~~~~~l~~p~~~~~~~l~~~~~Gi~~~~~~---~g~~lvGGdt~~~~~~~---~~~i~~t~~G~v~~~-~-~~-~~  160 (338)
T 2z1e_A           90 AEPIALANSMIIGEGLDMEVLKRVLKSMDETARE---VPVPIVTGDTKVVEDKI---EMFVITAGIGIAEHP-V-SD-AG  160 (338)
T ss_dssp             CEEEEEEEEEEEETTCCHHHHHHHHHHHHHHHHH---TTCCEEEEEEEEESSSC---CEEEEEEEEEEESSC-C-CT-TC
T ss_pred             CchhHhEEEEecCCCCCHHHHHHHHHHHHHHHHH---cCCEEECcEEEEcCCCC---ceEEEEEEEEEECCc-c-Cc-cC
Confidence            3487777765553   337788888888  6777   99999999999987422   566788888887644 2 22 44


Q ss_pred             ccCCcEEEEecCCCCCcccc
Q psy13615        137 VAAGDVVIALPSSGIHSNGF  156 (263)
Q Consensus       137 l~~g~~ii~Lp~~G~~~~g~  156 (263)
                      .++||+|+.....|.|+.++
T Consensus       161 a~~GD~i~vtg~~G~~g~~~  180 (338)
T 2z1e_A          161 AKVGDAVLVSGTIGDHGIAL  180 (338)
T ss_dssp             CCTTCEEEESSCSSHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHH
Confidence            57999999887778776443

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*

Probab=94.93  E-value=0.032  Score=48.64  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=42.8

Q ss_pred             CCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        186 GPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       186 G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      ...+|+++...|.+ ++++..+++. ++..++++.+   |  +.|...+.++.+..+       .+.++|+|+|+|.
T Consensus       215 ~~~~g~~~~~~p~~-l~~~~~~~i~-~~a~~~~~~l---g--~~G~~~vD~~~~~~g-------~~~~iEiN~rpg~  277 (306)
T 1iow_A          215 KFLSDETQYFCPAG-LEASQEANLQ-ALVLKAWTTL---G--CKGWGRIDVMLDSDG-------QFYLLEANTSPGM  277 (306)
T ss_dssp             HHTCSCCEEESSCC-CCHHHHHHHH-HHHHHHHHHH---T--CCSEEEEEEEECTTS-------CEEEEEEESSCCC
T ss_pred             eecCCCeeEEcCCC-CCHHHHHHHH-HHHHHHHHHc---C--CceEEEEEEEEcCCC-------CEEEEEecCCCCC
Confidence            34578888888876 4666666664 4455555554   4  478888999855432       1568899999985

>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli}

Probab=94.89  E-value=0.014  Score=53.48  Aligned_cols=83  Identities=18%  Similarity=0.175  Sum_probs=60.0

Q ss_pred             HHcCCCEEEeeCCCCC----CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCC
Q psy13615         59 RNAGIPTKVSTYKHTL----ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLP  132 (263)
Q Consensus        59 ~~~gIP~~~v~~~~~~----~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in  132 (263)
                      ..-+-|.++++...+.    +.+..+++++++  +|++   +++.++||+|...|+.    .+.++  +.|++++++++.
T Consensus        94 amGA~P~~~l~~l~~p~~~~~~~~l~~i~~Gi~~~~~~---~gv~lvGGdt~~~~~~----~~~~t--~vG~v~~~~~~~  164 (347)
T 3u0o_A           94 AMGGKPIMAIAILGWPINKLSPEIAREVTEGGRYACRQ---AGIALAGGHSIDAPEP----IFGLA--VTGIVPTERVKK  164 (347)
T ss_dssp             HTTCEEEEEEEEEEECTTTSCHHHHHHHHHHHHHHHHH---TTCCEEEEEEEECSSC----EEEEE--EEEEEEGGGCCC
T ss_pred             HcCCchHHHHhheeCCCCCCCHHHHHHHHHHHHHHHHH---cCCEEEcceeccCCCc----EEEEE--EEEEECCcceec
Confidence            3345688888765543    237788899988  7777   9999999999998752    34444  567777666766


Q ss_pred             ccccccCCcEEEEecCCCC
Q psy13615        133 KVKDVAAGDVVIALPSSGI  151 (263)
Q Consensus       133 ~hpsl~~g~~ii~Lp~~G~  151 (263)
                      . ...++||+|+.....|.
T Consensus       165 ~-~~a~~GD~iiltg~~G~  182 (347)
T 3u0o_A          165 N-STAQAGCKLFLTKPLGI  182 (347)
T ss_dssp             S-SCCCTTCEEEESSCBCH
T ss_pred             C-CCCCCCCEEEEeCCccH
Confidence            5 55689999997766554

>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*

Probab=94.82  E-value=0.016  Score=50.92  Aligned_cols=68  Identities=9%  Similarity=-0.017  Sum_probs=43.8

Q ss_pred             ccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCC
Q psy13615        180 KYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPE  259 (263)
Q Consensus       180 ~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~  259 (263)
                      .|+.+...+++|+..+ |.+ ++++..+++. ++..++++.+   |  +.|...++++.++        .++.++|+|+|
T Consensus       204 ~~~~~~~~~~~g~~~~-p~~-l~~~~~~~i~-~~a~~~~~~l---g--~~G~~~vD~~~~~--------g~~~vlEiN~r  267 (307)
T 3r5x_A          204 FFDYNAKYDDASTIEE-VIE-LPAELKERVN-KASLACYKAL---K--CSVYARVDMMVKD--------GIPYVMEVNTL  267 (307)
T ss_dssp             EETTEEEEEEEEEEEE-ECC-CCHHHHHHHH-HHHHHHHHHT---T--CCSEEEEEEEEET--------TEEEEEEEESS
T ss_pred             ccChhhcCCCCCCeEe-cCC-CCHHHHHHHH-HHHHHHHHHh---C--CCceEEEEEEEEC--------CeEEEEEEcCC
Confidence            3344444447788877 765 5677666663 5555555554   3  4477788888553        23468899999


Q ss_pred             CCCC
Q psy13615        260 EGDP  263 (263)
Q Consensus       260 ~gdp  263 (263)
                      +|.+
T Consensus       268 pg~~  271 (307)
T 3r5x_A          268 PGMT  271 (307)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            9963

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*

Probab=94.61  E-value=0.066  Score=55.93  Aligned_cols=88  Identities=15%  Similarity=0.181  Sum_probs=61.6

Q ss_pred             ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEee
Q psy13615        155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKR  234 (263)
Q Consensus       155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~  234 (263)
                      ++++ .++.|+.++...++.. |    ....|..+|++....|.+.++++..+++. ++..++.+++     .++|...+
T Consensus       761 E~~V-~~l~d~~~v~~~~i~e-~----~~~~g~~~gd~~~~~P~~~l~~~~~~~i~-~~a~~i~~aL-----g~~G~~~v  828 (1073)
T 1a9x_A          761 EVDV-DAICDGEMVLIGGIME-H----IEQAGVHSGDSACSLPAYTLSQEIQDVMR-QQVQKLAFEL-----QVRGLMNV  828 (1073)
T ss_dssp             EEEE-EEEECSSCEEEEEEEE-E----SSCTTSCGGGCCEEESCSSCCHHHHHHHH-HHHHHHHHHT-----TCCEEEEE
T ss_pred             EEEE-EEEEECCeEEEEeeEE-E----EeccCCccCCceEEecCCCCCHHHHHHHH-HHHHHHHHHc-----CCcceEEE
Confidence            4665 3777877766666664 4    23457888888888887677888877775 3444544443     56799999


Q ss_pred             ccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        235 GFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       235 gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      .++.++        .++.++|+|+|++.
T Consensus       829 df~v~~--------~~~~viEvNpR~~~  848 (1073)
T 1a9x_A          829 QFAVKN--------NEVYLIEVNPRAAR  848 (1073)
T ss_dssp             EEEECS--------SCEEEEEEECSCCT
T ss_pred             EEEEEC--------CeEEEEEEECCCcc
Confidence            999643        33568899999974

>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}

Probab=94.17  E-value=0.17  Score=45.50  Aligned_cols=93  Identities=11%  Similarity=0.100  Sum_probs=52.0

Q ss_pred             cccceeEEEecCcceeecCCcccc--ccccCC----CCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy13615        154 NGFSLVLCFTDGKTVKVMPPSQDH--KRKYNN----DKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTP  227 (263)
Q Consensus       154 ~g~Sl~~ai~dg~~~~~~~~t~dh--kr~~~~----d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~  227 (263)
                      .++++. .+.++.+...++++...  ...|+.    +....+|......|.+ ++++..+++. ++...+.+.+   |  
T Consensus       213 ~E~~v~-vl~~~~~~~~~~~~e~~~~~~~~d~~q~~~~ky~~~~~~~~~pa~-l~~~~~~~i~-~~a~~~~~~l---g--  284 (346)
T 3se7_A          213 TEIGCA-VMGNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPAD-ISTTSRSLVQ-DTAKAVYRAL---G--  284 (346)
T ss_dssp             EEEEEE-EEEETTEEEECCCEEECCC--------------CGGGSCEESSCC-CCHHHHHHHH-HHHHHHHHHH---T--
T ss_pred             EEEEEE-EEecCCCeEEEeeEEEecCCCCcCcccchhccccCCCeeEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--
Confidence            446652 44454444566665421  112333    4555666677777876 5777766664 4555555555   3  


Q ss_pred             eEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        228 FVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       228 ~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      +.|...+.++.+..+       .+.++|+|.|+|
T Consensus       285 ~~G~~~vD~~~~~~g-------~~~vlEiN~rPG  311 (346)
T 3se7_A          285 CRGLSRVDLFLTEDG-------KVVLNEVNTFPG  311 (346)
T ss_dssp             CCEEEEEEEEECTTS-------CEEEEEEESSCC
T ss_pred             CceEEEEEEEEeCCC-------CEEEEEEeCCCC
Confidence            458888999854432       156899999987

>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*

Probab=94.07  E-value=0.21  Score=44.73  Aligned_cols=105  Identities=14%  Similarity=0.135  Sum_probs=57.8

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCcccc--ccccCCCCCCC----CCCeeEECcccCCCHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDH--KRKYNNDKGPN----TGGMGAYCPCDILTEAQKKEIHDTI  213 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dh--kr~~~~d~G~d----TGgmga~~pv~i~~~~~~~~i~~~i  213 (263)
                      ..++|+-.-.|   .++++. .+.++.++..+++....  ...|+.+....    +|......|.+ ++++..+++. ++
T Consensus       202 ~~~lvEe~I~G---~E~~v~-vl~~~~~~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~-l~~~~~~~i~-~~  275 (343)
T 1e4e_A          202 SKILIEQAVSG---CEVGCA-VLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD-LSAEERGRIQ-ET  275 (343)
T ss_dssp             SSEEEEECCCS---EEEEEE-EEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCS-SCHHHHHHHH-HH
T ss_pred             CcEEEEeCcCC---eEEEEE-EEeCCCCeEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCC-CCHHHHHHHH-HH
Confidence            34555332244   346652 44454445555554311  11333333444    56655566765 5666666664 44


Q ss_pred             HHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        214 LMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       214 l~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      ..++.++|   |  +.|...+.++.+..+       .+.++|+|.|+|-
T Consensus       276 a~~~~~al---g--~~G~~~vD~~~~~~g-------~~~viEiN~rpg~  312 (343)
T 1e4e_A          276 VKKIYKTL---G--CRGLARVDMFLQDNG-------RIVLNEVNTLPGF  312 (343)
T ss_dssp             HHHHHHHT---T--CEEEEEEEEEECTTC-------CEEEEEEESSCCC
T ss_pred             HHHHHHHc---C--CceEEEEEEEEeCCC-------CEEEEEeeCCCCC
Confidence            44554544   4  479999999954332       1468999999983

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}

Probab=94.03  E-value=0.051  Score=49.83  Aligned_cols=105  Identities=11%  Similarity=0.040  Sum_probs=60.2

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCcc-ccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQ-DHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI  218 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~-dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i  218 (263)
                      .+++|+-.-.|.  .++|+..+.++|. ....++-. .....|+.+.++.+|+....+|.+ ++++..+++. ++..+++
T Consensus       222 ~~vlVEe~I~G~--~E~svi~v~v~g~-~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~-~~a~~~~  296 (367)
T 2pvp_A          222 KEVLIEPFIQGV--KEYNLAGCKIKKD-FCFSYIEEPNKQEFLDFKQKYLDFSRNKAPKAS-LSNALEEQLK-ENFKKLY  296 (367)
T ss_dssp             SCEEEEECCTTC--EEEEEEEEEETTE-EEEEEEEETTTTEEECCCCSSCCSCCCSCCCCC-CCHHHHHHHH-HHHHHHH
T ss_pred             CcEEEEeCCCCC--ceeeEEEEEECCE-EEEEEEEEecCCceEcccccccCCCeeEEecCC-CCHHHHHHHH-HHHHHHH
Confidence            345554333441  4566544555543 22232211 123456677788888877777876 5776666663 3443444


Q ss_pred             HHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        219 KKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       219 ~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      ++|   |  +.|...+.++.+ .       .++.++|+|.|+|.
T Consensus       297 ~aL---g--~~G~~~vDf~~~-~-------g~~~vlEiN~rpg~  327 (367)
T 2pvp_A          297 SDL---F--DGAIIRCDFFVI-E-------NEVYLNEINPIPGS  327 (367)
T ss_dssp             TTT---S--TTCCEEEEEEEE-T-------TEEEEEEEESSCGG
T ss_pred             HHc---C--CCCEEEEEEEEE-C-------CeEEEEEEeCCCCC
Confidence            433   4  467788888854 1       23468999999983

>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*

Probab=93.95  E-value=0.087  Score=46.41  Aligned_cols=67  Identities=13%  Similarity=-0.142  Sum_probs=45.7

Q ss_pred             CCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        186 GPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       186 G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      ++....++.. |.+ ++++..+++ .++..+++++|-++...+.|...+.++.+..+       ++.++|+|+|+|.
T Consensus       224 ~~~~~~~g~~-p~~-l~~~~~~~i-~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~~g-------~~~viEiN~R~g~  290 (334)
T 2r85_A          224 DITYTVIGNI-PIV-LRESLLMDV-IEAGERVVKAAEELMGGLWGPFCLEGVFTPDL-------EFVVFEISARIVA  290 (334)
T ss_dssp             CCCEEEEEEE-ECC-CCGGGHHHH-HHHHHHHHHHHHHHSSCCCEEEEEEEEECTTS-------CEEEEEEECSCCG
T ss_pred             CCceeeeCCC-Ccc-cCHHHHHHH-HHHHHHHHHHHHhhcccccccEEEEEEECCCC-------CEEEEEEeCCcCC
Confidence            3333333444 554 466666777 47777888888665667999999999965332       2468899999985

>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}

Probab=93.94  E-value=0.14  Score=47.23  Aligned_cols=103  Identities=13%  Similarity=0.112  Sum_probs=50.8

Q ss_pred             cEEEEecCCCCCccccceeEEEecCcceeecCCcccc--ccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHH
Q psy13615        141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDH--KRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVI  218 (263)
Q Consensus       141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dh--kr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i  218 (263)
                      +++|+-.-.|   .++++. .+.+ .....++++...  ...|+.+....+|+....+|.+ ++++..+++. ++...+.
T Consensus       239 ~vlVEe~I~G---~E~~v~-vl~d-~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~-~~a~~~~  311 (383)
T 3k3p_A          239 RVLIEQGVDA---REIEVG-ILGN-TDVKTTLPGEIVKDVAFYDYEAKYIDNKITMAIPAE-IDPVIVEKMR-DYAATAF  311 (383)
T ss_dssp             EEEEEECCCS---EEEEEE-EEES-SSCEECCCEEEC-----------------CEESSCC-CCHHHHHHHH-HHHHHHH
T ss_pred             eEEEEcCCCC---eEEEEE-EEeC-CCeeEEeeEEEecCCCccchhhcccCCCeeEEecCC-CCHHHHHHHH-HHHHHHH
Confidence            4445432244   446652 3334 334445544321  1244455556677777888887 5777766664 4444444


Q ss_pred             HHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        219 KKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       219 ~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      +++   |  +.|...+.++.+..+       .+.++|+|.|+|.
T Consensus       312 ~aL---g--~~G~~~vDf~~~~~g-------~~~vlEINtrPG~  343 (383)
T 3k3p_A          312 RTL---G--CCGLSRCDFFLTEDG-------KVYLNELNTMPGF  343 (383)
T ss_dssp             HHT---T--CCEEEEEEEEECTTC-------CEEEEEEESSCCC
T ss_pred             HHc---C--CceEEEEEEEEECCC-------CEEEEEeeCCCCC
Confidence            443   4  569988999955433       1468999999994

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}

Probab=93.76  E-value=0.082  Score=48.25  Aligned_cols=59  Identities=17%  Similarity=0.194  Sum_probs=40.6

Q ss_pred             CCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEE-EEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        189 TGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVG-EKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       189 TGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G-~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      ...++.+.|.+ ++++..+++. ++..++++++   |  |.| ...+.++.++        .++.++|+|+|+|.
T Consensus       223 ~~~~~~~~p~~-l~~~~~~~l~-~~a~~~~~~l---g--~~gg~~~ve~~~~~--------~~~~~iEiN~R~~~  282 (403)
T 4dim_A          223 AVPVGHYVPLD-VKDDIIEKTK-TEVKKAIKAL---G--LNNCAVNVDMILKD--------NEVYIIELTGRVGA  282 (403)
T ss_dssp             EEEEEEEESCC-SCHHHHHHHH-HHHHHHHHHH---T--CCSEEEEEEEEEET--------TEEEEEEEESSCCS
T ss_pred             CcceeEEeCCC-CCHHHHHHHH-HHHHHHHHHc---C--CCCCcEEEEEEEEC--------CcEEEEEEcCCCCC
Confidence            45677788876 6777777775 5556666665   2  454 6678888543        34578899999985

>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus}

Probab=93.64  E-value=0.019  Score=51.30  Aligned_cols=80  Identities=18%  Similarity=0.105  Sum_probs=56.6

Q ss_pred             CEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCcccccc
Q psy13615         64 PTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVA  138 (263)
Q Consensus        64 P~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~  138 (263)
                      |.++.+.....   +.+..+++++++  .|++   +++.++||+|.+.+..      .++++  |.+++.+.+.  ...+
T Consensus        83 P~~~~~~~~~p~~~~~~~l~~~~~Gi~~~~~~---~g~~lvGG~t~~~~~~------~i~~t--G~v~~~~~~~--~~a~  149 (311)
T 2yxz_A           83 PLGFTLGLFLPEDLEEGFVLELVRGAAEAAKR---LGAFLLGGDTNRGVEV------ALTVS--GYALAEAPLP--RKAL  149 (311)
T ss_dssp             EEEEEEEEEECTTCBHHHHHHHHHHHHHHHHH---TTCEEEEEEEEECSSC------EEEEE--EEEEESSCCC--SCCC
T ss_pred             hhhheeeEeCCCCCCHHHHHHHHHHHHHHHHH---cCCeEEceecCCCCCc------EEEEE--eeeCCCCccc--cCCC
Confidence            77666554333   236778888888  7777   9999999999986532      35555  6666555555  4578


Q ss_pred             CCcEEEEec-CCCCCcccc
Q psy13615        139 AGDVVIALP-SSGIHSNGF  156 (263)
Q Consensus       139 ~g~~ii~Lp-~~G~~~~g~  156 (263)
                      +||+|+... ..|.|+.++
T Consensus       150 ~GD~i~~~g~~~G~~~~~~  168 (311)
T 2yxz_A          150 PGDLLYLAGDRWGRTGAAI  168 (311)
T ss_dssp             TTCEEEEESSCTTHHHHHH
T ss_pred             CCCEEEEeCCCcchHHHHH
Confidence            999999888 788876554

>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A

Probab=93.24  E-value=0.13  Score=49.49  Aligned_cols=56  Identities=16%  Similarity=0.071  Sum_probs=40.4

Q ss_pred             ECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccc-cCCceeeecCcceeeeeCCCCCCC
Q psy13615        195 YCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEG-TVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       195 ~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~-~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      .+|.+..+++..+++. ++..++++++     .|.|..+++++.+ ..+       ++.++|+|+|+|++
T Consensus       319 ~~P~~~l~~~~~~~i~-~~a~~~~~al-----g~~G~~~ve~~~~~~dg-------~~~~iEiN~R~~g~  375 (554)
T 1w96_A          319 EAPVTIAKAETFHEME-KAAVRLGKLV-----GYVSAGTVEYLYSHDDG-------KFYFLELNPRLQVE  375 (554)
T ss_dssp             EESCCSSCHHHHHHHH-HHHHHHHHHH-----TCCEEEEEEEEECTTTC-------CEEEEEEECSCCTT
T ss_pred             eCCCcCCCHHHHHHHH-HHHHHHHHHc-----CCcceEEEEEEEECCCC-------CEEEEEeeCCCCcc
Confidence            4577767888877775 4666666655     5779999999964 222       25688999999874

>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}

Probab=92.88  E-value=0.2  Score=46.61  Aligned_cols=57  Identities=18%  Similarity=0.134  Sum_probs=37.5

Q ss_pred             eEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCc-ceeeeeCCCCCC
Q psy13615        193 GAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRN-RREKEDNPEEGD  262 (263)
Q Consensus       193 ga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~-~~~~e~n~~~gd  262 (263)
                      +..+|.+.++++..+++. ++..+++++     +.|.|+++++++.+.       ..| +.++|+|+|++-
T Consensus       238 ~~~~P~~~l~~~~~~~i~-~~a~~~~~~-----lg~~G~~~ve~~~~~-------~~g~~~viEiN~R~~~  295 (451)
T 2vpq_A          238 VEEAPSPILDDETRREMG-NAAVRAAKA-----VNYENAGTIEFIYDL-------NDNKFYFMEMNTRIQV  295 (451)
T ss_dssp             EEEESCTTCCHHHHHHHH-HHHHHHHHH-----TTCCEEEEEEEEEET-------TTTEEEEEEEECSCCT
T ss_pred             EEEcCCCCCCHHHHHHHH-HHHHHHHHH-----cCCcceEEEEEEEEC-------CCCCEEEEEeeCCCCC
Confidence            345677767877766665 333333333     457799999999541       223 568899999973

>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2

Probab=92.85  E-value=0.2  Score=46.58  Aligned_cols=56  Identities=18%  Similarity=0.042  Sum_probs=35.9

Q ss_pred             EECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        194 AYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       194 a~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      ..+|.+.++++..+++.    ..+.+.+..  +.|.|..+++++.+..+       .+.++|+|+|++-
T Consensus       239 ~~~P~~~l~~~~~~~i~----~~a~~~~~~--lg~~G~~~ve~~~~~~g-------~~~viEiN~R~~~  294 (451)
T 1ulz_A          239 EIAPSLILTPEKREYYG----NIVTKAAKE--IGYYNAGTMEFIADQEG-------NLYFIEMNTRIQV  294 (451)
T ss_dssp             EEESCSSCCHHHHHHHH----HHHHHHHHH--TTCCEEEEEEEEECTTC-------CEEEEEEECSCCT
T ss_pred             eECCcccCCHHHHHHHH----HHHHHHHHH--cCCCcceEEEEEEeCCC-------CEEEEEeeCCCCc
Confidence            34566666776666554    233333333  45789999999955332       1568899999973

>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...

Probab=92.76  E-value=0.2  Score=46.55  Aligned_cols=54  Identities=13%  Similarity=0.016  Sum_probs=36.0

Q ss_pred             EECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        194 AYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       194 a~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      ..+|.+.++++..+++. ++..++++++     .|.|+.+++++.+.        .++.++|+|+|++
T Consensus       241 ~~~p~~~l~~~~~~~i~-~~a~~~~~~l-----g~~G~~~ve~~~~~--------~~~~viEiN~R~~  294 (449)
T 2w70_A          241 EEAPAPGITPELRRYIG-ERCAKACVDI-----GYRGAGTFEFLFEN--------GEFYFIEMNTRIQ  294 (449)
T ss_dssp             EEESCTTCCHHHHHHHH-HHHHHHHHHH-----TCCEEEEEEEEEET--------TEEEEEEEECSCC
T ss_pred             eeCCcccCCHHHHHHHH-HHHHHHHHHc-----CCCceEEEEEEEEC--------CCEEEEEEECCCC
Confidence            34666666777666654 3333444433     47799999999544        3457899999996

>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*

Probab=92.51  E-value=0.37  Score=43.56  Aligned_cols=65  Identities=17%  Similarity=0.170  Sum_probs=37.2

Q ss_pred             CCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        184 DKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       184 d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      +....+|+.....|.+ ++++..+++. ++..++.+++   |  +.|...+.++.+..+       .+.++|+|.|+|-
T Consensus       249 ~~k~~~g~~~~~~pa~-l~~~~~~~i~-~~a~~~~~al---g--~~G~~~vD~~~~~~g-------~~~viEiN~rpg~  313 (364)
T 2i87_A          249 KSKYKDGKVQLQIPAD-LDEDVQLTLR-NMALEAFKAT---D--CSGLVRADFFVTEDN-------QIYINETNAMPGF  313 (364)
T ss_dssp             --------CCEESSCS-SCHHHHHHHH-HHHHHHHHHT---T--CCEEEEEEEEECTTC-------CEEEEEEESSCCC
T ss_pred             HHcccCCCeeEEeCCC-CCHHHHHHHH-HHHHHHHHHc---C--CCcEEEEEEEEecCC-------CEEEEEEeCCCCC
Confidence            3334455555667776 5666666664 4444444444   4  459999999954322       1468999999983

>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}

Probab=92.44  E-value=0.38  Score=44.13  Aligned_cols=103  Identities=17%  Similarity=0.181  Sum_probs=51.3

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcceeecCCccc--cccccCCCCCCCCCC-eeEECcccCCCHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQD--HKRKYNNDKGPNTGG-MGAYCPCDILTEAQKKEIHDTILMR  216 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~d--hkr~~~~d~G~dTGg-mga~~pv~i~~~~~~~~i~~~il~~  216 (263)
                      .+++|+-.-.|   .++++. .+.+ .....+++...  +...|+.+....+|. ....+|.+ ++++..++++ ++..+
T Consensus       217 ~~vlVEe~I~G---~E~~v~-vl~~-~~~~~~~~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~-l~~~~~~~i~-~~a~~  289 (372)
T 3tqt_A          217 DRLMVEPRIRG---REIECA-VLGN-GAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD-LSESVTKQIQ-QIAID  289 (372)
T ss_dssp             SCEEEEECCCS---EEEEEE-EEES-SSCEECCCEEEECC---------------CEEESCCC-CCHHHHHHHH-HHHHH
T ss_pred             CCEEEECCCCC---EEEEEE-EEeC-CCceEeeeEEEecCCCccchhhcccCCCceEEEeCCC-CCHHHHHHHH-HHHHH
Confidence            34445433344   456652 3333 34444454431  112344455555665 66777877 5777777664 44444


Q ss_pred             HHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        217 VIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       217 ~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      +.++|   |  +.|..-+.++.+..+       .+.++|+|.|+|
T Consensus       290 ~~~aL---g--~~G~~rvDf~~~~dg-------~~~vlEINt~PG  322 (372)
T 3tqt_A          290 AFKMV---H--CSGMARVDFFVTPNN-------KVLVNEINTIPG  322 (372)
T ss_dssp             HHHHT---T--CCEEEEEEEEECTTC-------CEEEEEEESSCC
T ss_pred             HHHHh---C--CccEEEEEEEEeCCC-------cEEEEEEECCCC
Confidence            44443   3  568888898855432       146899999998

>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1

Probab=92.18  E-value=0.22  Score=45.51  Aligned_cols=61  Identities=18%  Similarity=0.186  Sum_probs=39.7

Q ss_pred             CCC-CeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        188 NTG-GMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       188 dTG-gmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      .+| +....+|.+ ++++..+++. ++..+++++|   |  +.|...+.++.+..+       .+.++|+|+|+|.
T Consensus       262 ~~g~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~al---g--~~G~~~vD~~~~~~g-------~~~vlEiN~rpg~  323 (377)
T 1ehi_A          262 VDNSAVHFQIPAQ-LSPEVTKEVK-QMALDAYKVL---N--LRGEARMDFLLDENN-------VPYLGEPNTLPGF  323 (377)
T ss_dssp             TCCTTCEEESSCC-CCHHHHHHHH-HHHHHHHHHT---T--CCEEEEEEEEECTTC-------CEEEEEEESSCCC
T ss_pred             cCCCCeeEEeCCC-CCHHHHHHHH-HHHHHHHHHc---C--CCcEEEEEEEEeCCC-------CEEEEEEeCCCCC
Confidence            345 566677876 5777766664 3444444443   4  459999999954322       1468999999984

>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*

Probab=92.04  E-value=0.46  Score=43.70  Aligned_cols=67  Identities=15%  Similarity=0.130  Sum_probs=38.5

Q ss_pred             CCCCCCCC-CCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCC
Q psy13615        182 NNDKGPNT-GGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEE  260 (263)
Q Consensus       182 ~~d~G~dT-Ggmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~  260 (263)
                      +.+..... ++....+|.+ ++++..+++. ++..++.+.+   |  +.|...+.++.+..+       .+.++|+|.|+
T Consensus       274 d~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aL---g--~~G~~~vDf~~~~dg-------~~~vlEiN~~P  339 (386)
T 3e5n_A          274 SYATKYISEHGAEIVIPAD-IDAQTQQRIQ-QIAVQAYQAL---G--CAGMARVDVFLCADG-------RIVINEVNTLP  339 (386)
T ss_dssp             ------------CEESSCS-SCHHHHHHHH-HHHHHHHHHH---T--CCSEEEEEEEECTTC-------CEEEEEEESSC
T ss_pred             chhcccCCCCCeEEEECCC-CCHHHHHHHH-HHHHHHHHHh---C--CccEEEEEEEEECCC-------cEEEEEeECCC
Confidence            33333433 3466778887 5777777774 5555555555   3  468888888854332       15689999999


Q ss_pred             CC
Q psy13615        261 GD  262 (263)
Q Consensus       261 gd  262 (263)
                      |-
T Consensus       340 G~  341 (386)
T 3e5n_A          340 GF  341 (386)
T ss_dssp             CC
T ss_pred             CC
Confidence            94

>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*

Probab=91.92  E-value=0.66  Score=42.04  Aligned_cols=68  Identities=15%  Similarity=0.161  Sum_probs=42.1

Q ss_pred             ccCCCCCCCCCC-eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCC
Q psy13615        180 KYNNDKGPNTGG-MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNP  258 (263)
Q Consensus       180 ~~~~d~G~dTGg-mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~  258 (263)
                      .|+.+.....|. .....|.+ ++++..+++. ++...+.+.+   |  +.|...+.++.+..+       .+.++|+|.
T Consensus       253 ~~~~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~al---g--~~G~~~vD~~~~~~g-------~~~vlEiN~  318 (364)
T 3i12_A          253 FYAYDTKYIDDNGAQVVVPAQ-IPSEVNDKIR-AIAIQAYQTL---G--CAGMARVDVFLTADN-------EVVINEINT  318 (364)
T ss_dssp             CC--TTTTSGGGGCEEESSCS-SCHHHHHHHH-HHHHHHHHHT---T--CCEEEEEEEEECTTC-------CEEEEEEES
T ss_pred             ccCHHHcccCCCceEEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--CceEEEEEEEEecCC-------CEEEEEeeC
Confidence            334444444544 67778887 5777766664 4444444443   4  479888999855332       146899999


Q ss_pred             CCC
Q psy13615        259 EEG  261 (263)
Q Consensus       259 ~~g  261 (263)
                      |+|
T Consensus       319 ~Pg  321 (364)
T 3i12_A          319 LPG  321 (364)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            887

>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}

Probab=91.90  E-value=0.14  Score=46.85  Aligned_cols=61  Identities=13%  Similarity=0.099  Sum_probs=40.5

Q ss_pred             CCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        186 GPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       186 G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      ...+|+.....|.+ ++++..++++ ++..++.++|   +  +.|..-+.++.+..+        ..++|+|.|+|
T Consensus       276 ky~~~~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~aL---g--~~G~~~vDf~~~~dg--------~~vlEIN~~PG  336 (373)
T 3lwb_A          276 KYLDDAAELDVPAK-VDDQVAEAIR-QLAIRAFAAI---D--CRGLARVDFFLTDDG--------PVINEINTMPG  336 (373)
T ss_dssp             HHTCTTCEEESSCC-CCHHHHHHHH-HHHHHHHHHT---T--CCSEEEEEEEEETTE--------EEEEEEESSCC
T ss_pred             cccCCCceEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--CccEEEEEEEEECCC--------CEEEEecCCCC
Confidence            34456666677877 5777777664 4444444444   4  458888899854433        35899999998

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=91.54  E-value=0.53  Score=42.86  Aligned_cols=96  Identities=11%  Similarity=0.115  Sum_probs=52.9

Q ss_pred             CcEEEEecCCCCCccccceeEEEecCcc-eeecCCccccccccCCCCCCCCCCeeEE--CcccCCCHHHHHHHHHHHHHH
Q psy13615        140 GDVVIALPSSGIHSNGFSLVLCFTDGKT-VKVMPPSQDHKRKYNNDKGPNTGGMGAY--CPCDILTEAQKKEIHDTILMR  216 (263)
Q Consensus       140 g~~ii~Lp~~G~~~~g~Sl~~ai~dg~~-~~~~~~t~dhkr~~~~d~G~dTGgmga~--~pv~i~~~~~~~~i~~~il~~  216 (263)
                      +.++|+-.-.|  ..++++. .+.+.++ +..++++..+.          .+|+...  .|.+ ++++..+++. ++..+
T Consensus       183 ~~~lvEe~i~g--~~E~~v~-~~~~~~G~~~~~~~~e~~~----------~~g~~~~~~~p~~-l~~~~~~~~~-~~a~~  247 (389)
T 3q2o_A          183 AECILEKWVPF--EKEVSVI-VIRSVSGETKVFPVAENIH----------VNNILHESIVPAR-ITEELSQKAI-AYAKV  247 (389)
T ss_dssp             SCEEEEECCCC--SEEEEEE-EEECTTCCEEECCCEEEEE----------ETTEEEEEEESCS-SCHHHHHHHH-HHHHH
T ss_pred             CCEEEEecccC--ceEEEEE-EEEcCCCCEEEecCeeeEE----------cCCceEEEECCCC-CCHHHHHHHH-HHHHH
Confidence            44555433333  2456653 5555333 34556553110          1133333  4443 5667666664 44444


Q ss_pred             HHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        217 VIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       217 ~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      +++.+     .|.|++.+.++.+..+       .+.++|+|+|+|.
T Consensus       248 ~~~~l-----g~~G~~~ve~~~~~dg-------~~~viEiNpR~~~  281 (389)
T 3q2o_A          248 LADEL-----ELVGTLAVEMFATADG-------EIYINELAPRPHN  281 (389)
T ss_dssp             HHHHT-----TCCEEEEEEEEECTTS-------CEEEEEEESSCCG
T ss_pred             HHHHc-----CCeeEEEEEEEEeCCC-------CEEEEEeeCCCCC
Confidence            44443     4689999999955332       2568899999985

>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*

Probab=91.44  E-value=0.058  Score=53.08  Aligned_cols=84  Identities=19%  Similarity=0.231  Sum_probs=55.5

Q ss_pred             CEEEeeCCCCCCHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCc
Q psy13615         64 PTKVSTYKHTLILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGD  141 (263)
Q Consensus        64 P~~~v~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~  141 (263)
                      |...++...++  +..+++++++  .|++   +|+.++||+|...|.+ ....+ +.+++.|.+++.+++.. ...++||
T Consensus       114 P~a~l~~l~~g--~~l~~~~~Gi~~~~~~---~GvplvGG~t~~~~~y-~~~p~-~~~~~vG~v~~~~~~~~-~~~~~GD  185 (615)
T 1vk3_A          114 PTAIFDSLHMS--RIIDGIIEGIADYGNS---IGVPTVGGELRISSLY-AHNPL-VNVLAAGVVRNDMLVDS-KASRPGQ  185 (615)
T ss_dssp             EEEEEEEEEES--SCCHHHHHHHHHHHHH---HTCCEEEEEEEECGGG-TTCCE-EEEEEEEEEETTSCCCS-SCCSTTC
T ss_pred             ehhhhhhhhHH--HHHHHHHHHHHHHHHH---cCCCEeEEEEEEecCC-CCCce-EEEEEEEEEcHHHccCc-cCCCCcC
Confidence            87777766665  3455666766  5677   9999999999987774 32333 56667888876666654 3457999


Q ss_pred             EEEEecC----CCCCccc
Q psy13615        142 VVIALPS----SGIHSNG  155 (263)
Q Consensus       142 ~ii~Lp~----~G~~~~g  155 (263)
                      +||.+.+    .|.|+..
T Consensus       186 ~Iil~G~~tg~~G~~g~~  203 (615)
T 1vk3_A          186 VIVIFGGATGRDGIHGAS  203 (615)
T ss_dssp             EEEEEESCBCSCC-----
T ss_pred             EEEEECCCCCCCcccHHH
Confidence            9998755    5667644

>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*

Probab=91.27  E-value=0.27  Score=44.92  Aligned_cols=95  Identities=13%  Similarity=0.100  Sum_probs=57.2

Q ss_pred             cEEEEecCCCCCccccceeEEEecCcc-eeecCCccccccccCCCCCCCCCCee--EECcccCCCHHHHHHHHHHHHHHH
Q psy13615        141 DVVIALPSSGIHSNGFSLVLCFTDGKT-VKVMPPSQDHKRKYNNDKGPNTGGMG--AYCPCDILTEAQKKEIHDTILMRV  217 (263)
Q Consensus       141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~-~~~~~~t~dhkr~~~~d~G~dTGgmg--a~~pv~i~~~~~~~~i~~~il~~~  217 (263)
                      .++|+---.+  +.++|+. .+.+.++ +...|++..+.+          .|..  ++.|. .++++..++++ ++..++
T Consensus       149 ~vivEe~I~~--~~Eisv~-v~~~~~G~~~~~p~~e~~~~----------~g~~~~~~~pa-~l~~~~~~~~~-~~a~~i  213 (355)
T 3eth_A          149 ECIVEQGINF--SGEVSLV-GARGFDGSTVFYPLTHNLHQ----------DGILRTSVAFP-QANAQQQARAE-EMLSAI  213 (355)
T ss_dssp             TEEEEECCCC--SEEEEEE-EEECTTSCEEECCCEEEEEE----------TTEEEEEEECS-SCCHHHHHHHH-HHHHHH
T ss_pred             CEEEEEccCC--CcEEEEE-EEEcCCCCEEEECCEEEEee----------CCeEEEEECCC-CCCHHHHHHHH-HHHHHH
Confidence            4555432232  3457763 4545443 445677643211          1222  23333 35777777774 666677


Q ss_pred             HHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        218 IKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       218 i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      +++|     .|+|++.+.|+.+.        .++.|+|+|+|++++
T Consensus       214 ~~aL-----g~~G~~~vEf~~~~--------~~~~v~EinpR~~~s  246 (355)
T 3eth_A          214 MQEL-----GYVGVMAMECFVTP--------QGLLINELAPRVHNS  246 (355)
T ss_dssp             HHHH-----TCCEEEEEEEEEET--------TEEEEEEEESSCCGG
T ss_pred             HHHC-----CCeeEEEEEEEEEC--------CcEEEEEeeCCCCCC
Confidence            6665     57999999999553        345789999999863

>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*

Probab=91.01  E-value=0.19  Score=46.67  Aligned_cols=67  Identities=22%  Similarity=0.260  Sum_probs=51.1

Q ss_pred             HHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcCCccccccCCcEEEEecCCCCCc
Q psy13615         77 SNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLLPKVKDVAAGDVVIALPSSGIHS  153 (263)
Q Consensus        77 ~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~  153 (263)
                      +..+++++++  .|++   +++.++||+|...|.      ..+.+++.|++++.+++.. ...++||+|+..-.-|.|+
T Consensus       141 ~~l~~i~~Gi~~~~~~---~gv~lvGGdT~~~p~------~~i~~t~~G~v~~~~~l~~-~~a~~GD~Iiltg~lG~~~  209 (394)
T 3fd5_A          141 KVMPLIIQGFKDAAEE---AGTSVTGGQTVLNPW------IVLGGVATTVCQPNEFIMP-DNAVPGDVLVLTKPLGTQV  209 (394)
T ss_dssp             HHHHHHHHHHHHHHHH---TTCCEEEEEEEEESS------CEEEEEEEEEECGGGCCCT-TCCCTTCEEEESSCBCHHH
T ss_pred             HHHHHHHHHHHHHHHH---hCCcEEeeeEEEcCC------cEEEEEEEEEEcCCceecC-CCCCCCCEEEEECCccHHH
Confidence            3677888888  6777   999999999999764      2456677888876666665 5578999999876656553

>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A

Probab=90.91  E-value=0.81  Score=39.65  Aligned_cols=73  Identities=23%  Similarity=0.160  Sum_probs=41.6

Q ss_pred             ccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCC------------ChhhHHHHHcCCCEEEeeCCCC
Q psy13615          7 MVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN------------VEGLNIARNAGIPTKVSTYKHT   73 (263)
Q Consensus         7 m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~------------a~gl~~A~~~gIP~~~v~~~~~   73 (263)
                      |++++|++++.||. -|.+.+.+ .  .++   +.+|+++.++.+.            ..+...|+..|||..+++....
T Consensus         1 ~~~~MKvvvl~SGGkDSs~al~~-l--~~~---G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~   74 (237)
T 3rjz_A            1 MVGLADVAVLYSGGKDSNYALYW-A--IKN---RFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGE   74 (237)
T ss_dssp             --CCSEEEEECCSSHHHHHHHHH-H--HHT---TCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC---
T ss_pred             CCCCCEEEEEecCcHHHHHHHHH-H--HHc---CCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCC
Confidence            66667999999998 45444333 1  122   3578777543211            2345679999999999986532


Q ss_pred             CCHHHHHHHHHHh
Q psy13615         74 LILSNSLQVMQKV   86 (263)
Q Consensus        74 ~~~~~~~~i~~~l   86 (263)
                       +.+..+.+.+.+
T Consensus        75 -~~~e~e~l~~~l   86 (237)
T 3rjz_A           75 -KEKEVEDLKRVL   86 (237)
T ss_dssp             ----CHHHHHHHH
T ss_pred             -chHHHHHHHHHH
Confidence             123455555655

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=90.66  E-value=0.34  Score=51.11  Aligned_cols=62  Identities=18%  Similarity=0.210  Sum_probs=44.6

Q ss_pred             CCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccc-cCCceeeecCcceeeeeCCCCCCC
Q psy13615        189 TGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEG-TVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       189 TGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~-~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      ++.++..+|.+.++++..+++. ++..+++++     +.|.|...+.++.+ ..+       ...++|+|+|+|.+
T Consensus       254 ~~~~~e~~Pa~~l~~~~~~~i~-~~a~~i~~a-----lg~~G~~~vEf~vd~~dg-------~~~~iEiNpR~~~~  316 (1165)
T 2qf7_A          254 NQKVVERAPAPYLSEAQRQELA-AYSLKIAGA-----TNYIGAGTVEYLMDADTG-------KFYFIEVNPRIQVE  316 (1165)
T ss_dssp             TEEEEEEESCTTCCHHHHHHHH-HHHHHHHHH-----TTCCEEEEEEEEEETTTT-------EEEEEEEECSCCTT
T ss_pred             ccceEEecccccCCHHHHHHHH-HHHHHHHHH-----cCCCcceeEEEEEECCCC-------CEEEEEEEcCCCCC
Confidence            4568888898888888877775 355555544     35789999999954 222       25789999999864

>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}

Probab=90.10  E-value=0.44  Score=44.35  Aligned_cols=56  Identities=18%  Similarity=0.106  Sum_probs=36.3

Q ss_pred             eEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        193 GAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       193 ga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      ..++|.+.++++..+++.    ..+.+.+.+.|+  .|..+++++.+.        .++.++|+|+|++.
T Consensus       244 ~~~~P~~~l~~~~~~~i~----~~a~~~~~~lg~--~g~~~ve~~~~~--------~~~~viEiN~R~~~  299 (461)
T 2dzd_A          244 VEVAPSVSLSDELRQRIC----EAAVQLMRSVGY--VNAGTVEFLVSG--------DEFYFIEVNPRIQV  299 (461)
T ss_dssp             EEEESCTTSCHHHHHHHH----HHHHHHHHHTTC--CEEEEEEEEEET--------TEEEEEEEESSCCG
T ss_pred             EEECCcccCCHHHHHHHH----HHHHHHHHHcCC--CcceEEEEEEeC--------CCEEEEEEECCCCC
Confidence            345677667776655554    344455545555  466789998543        44578999999973

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*

Probab=88.01  E-value=1.8  Score=45.07  Aligned_cols=65  Identities=20%  Similarity=0.248  Sum_probs=46.0

Q ss_pred             CCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        185 KGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFV-GEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       185 ~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~-G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      .|..+|.....+|.+.++++..+++. +....+++.+     .|. |...+.++.+..+.      ...++|+|+|++
T Consensus       240 ~~v~~g~s~~~~Pa~~l~~~~~~~l~-~~a~~i~~~l-----g~~~G~~~vdf~~~~~~g------~~~viEiNpR~~  305 (1073)
T 1a9x_A          240 MGIHTGDSITVAPAQTLTDKEYQIMR-NASMAVLREI-----GVETGGSNVQFAVNPKNG------RLIVIEMNPRVS  305 (1073)
T ss_dssp             TTSCGGGSCEEESCCSCCHHHHHHHH-HHHHHHHHHH-----TCCSEEEEEEEEECTTTC------CEEEEEEESSCC
T ss_pred             CccccCcEEEEecCCCCCHHHHHHHH-HHHHHHHHHc-----CcccCceEEEEEEECCCC------CEEEEEecCCCC
Confidence            45677877777888778888877775 4444555554     367 99999999554221      346899999987

>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}

Probab=86.51  E-value=0.79  Score=38.19  Aligned_cols=59  Identities=22%  Similarity=0.176  Sum_probs=38.3

Q ss_pred             eccCCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCC----ChhhHHHHHcCCCEEEeeCC
Q psy13615          6 RMVQRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHN----VEGLNIARNAGIPTKVSTYK   71 (263)
Q Consensus         6 ~m~~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~----a~gl~~A~~~gIP~~~v~~~   71 (263)
                      .||.+.|+++..||.  .+-+..++.    +   .+.++.++..|...    ..+.+.|+++|||..+++..
T Consensus         2 ~~m~~~kv~v~~SGG~DS~~ll~ll~----~---~g~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~~~   66 (203)
T 3k32_A            2 NAMKLMDVHVLFSGGKDSSLSAVILK----K---LGYNPHLITINFGVIPSYKLAEETAKILGFKHKVITLD   66 (203)
T ss_dssp             ----CEEEEEECCCSHHHHHHHHHHH----H---TTEEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECC
T ss_pred             CcccCCeEEEEEECcHHHHHHHHHHH----H---cCCCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEECC
Confidence            578888999999997  343444441    2   13577777777532    34677899999999988754

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A

Probab=86.41  E-value=0.83  Score=40.22  Aligned_cols=67  Identities=21%  Similarity=0.238  Sum_probs=34.9

Q ss_pred             cCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCC
Q psy13615        181 YNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEE  260 (263)
Q Consensus       181 ~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~  260 (263)
                      ++.+....+|+....+|.+ ++++..+++. ++...+.+.   -|  +.|..-+.++.+..+       .+.++|+|.|+
T Consensus       219 ~~~~~k~~~g~~~~~~P~~-l~~~~~~~l~-~~a~~~~~~---lg--~~G~~~vD~~~~~~g-------~~~vlEiN~~p  284 (317)
T 4eg0_A          219 YDYHAKYVANDTQYLIPCG-LPAEQETELK-RIARRAFDV---LG--CTDWGRADFMLDAAG-------NAYFLEVNTAP  284 (317)
T ss_dssp             -----------CEEESSCS-SCHHHHHHHH-HHHHHHHHT---TT--CCSEEEEEEEECTTC-------CEEEEEEESSC
T ss_pred             echhhcccCCCeeEEcCCC-CCHHHHHHHH-HHHHHHHHH---hC--CCceEEEEEEEeCCC-------CEEEEEeeCCC
Confidence            3444455667777777876 4666666554 333333332   24  467777888854322       25689999999


Q ss_pred             C
Q psy13615        261 G  261 (263)
Q Consensus       261 g  261 (263)
                      |
T Consensus       285 g  285 (317)
T 4eg0_A          285 G  285 (317)
T ss_dssp             C
T ss_pred             C
Confidence            8

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=86.25  E-value=1.2  Score=39.83  Aligned_cols=55  Identities=29%  Similarity=0.371  Sum_probs=39.5

Q ss_pred             ccCCccEEEEEcCc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEE
Q psy13615          7 MVQRKRVAVLISGT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTK   66 (263)
Q Consensus         7 m~~~~riavl~SG~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~   66 (263)
                      |+.+.||+++.+|. |+.+-..+..   +..  ..+++++++.+++..+.+.|+++|++..
T Consensus         1 M~~~irVaIIG~G~iG~~~~~~l~~---~~~--~~elvav~d~~~~~~~~~~a~~~g~~~~   56 (312)
T 1nvm_B            1 MNQKLKVAIIGSGNIGTDLMIKVLR---NAK--YLEMGAMVGIDAASDGLARAQRMGVTTT   56 (312)
T ss_dssp             CCSCEEEEEECCSHHHHHHHHHHHH---HCS--SEEEEEEECSCTTCHHHHHHHHTTCCEE
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHh---hCc--CeEEEEEEeCChhhhHHHHHHHcCCCcc
Confidence            66778999999998 7655444421   112  3688888887777768889999998743

>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}

Probab=84.58  E-value=2.1  Score=40.33  Aligned_cols=58  Identities=14%  Similarity=0.043  Sum_probs=36.1

Q ss_pred             CCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-eccccccCCceeeecCc-ceeeeeCCCCC
Q psy13615        189 TGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKK-RGFTEGTVTAKVFSSRN-RREKEDNPEEG  261 (263)
Q Consensus       189 TGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~-~gl~~~~~~~~~~~~~~-~~~~e~n~~~g  261 (263)
                      .+..+..+|.+ ++++..+++. +....+++.+   |  |.|... +.++.+        ..| +.++|+|+|++
T Consensus       273 ~~~~~~~~Pa~-l~~~~~~~l~-~~a~~~~~al---G--~~g~~~~vef~~~--------~dg~~~~iEvNpR~~  332 (474)
T 3vmm_A          273 FTETSHITPSI-LDEEAKKKIV-EAAKKANEGL---G--LQNCATHTEIKLM--------KNREPGLIESAARFA  332 (474)
T ss_dssp             TBCCEEEESCC-CCHHHHHHHH-HHHHHHHHHH---T--CCSEEEEEEEEEE--------GGGEEEEEEEESSCC
T ss_pred             ccceEEEECCC-CCHHHHHHHH-HHHHHHHHHc---C--CCCccEEEEEEEc--------CCCCEEEEEEeCCCC
Confidence            56677788875 5666666554 3333444443   4  556554 677633        333 57899999997

>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*

Probab=84.41  E-value=0.94  Score=40.20  Aligned_cols=66  Identities=17%  Similarity=0.252  Sum_probs=41.4

Q ss_pred             cCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCC
Q psy13615        181 YNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEE  260 (263)
Q Consensus       181 ~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~  260 (263)
                      |+.+....+|+....+|.+ ++++..++++ ++..++.+++   |  +.|...+.++.+ .+       .+.++|+|.|+
T Consensus       226 ~~~~~k~~~g~~~~~~Pa~-l~~~~~~~i~-~~a~~~~~al---g--~~G~~~vD~~~~-~g-------~~~vlEiN~rp  290 (322)
T 2fb9_A          226 YDYETKYTPGRAELLIPAP-LDPGTQETVQ-ELALKAYKVL---G--VRGMARVDFFLA-EG-------ELYLNELNTIP  290 (322)
T ss_dssp             EETTTEEECCEEEEESSCC-CCTTHHHHHH-HHHHHHHHHH---T--CCSEEEEEEEEE-TT-------EEEEEEEESSC
T ss_pred             cCHHHcccCCCeEEEeCCC-CCHHHHHHHH-HHHHHHHHHh---C--CceEEEEEEEEE-CC-------cEEEEEEECCC
Confidence            3344444456566667876 4666666664 4555555555   4  358888888855 22       24689999999


Q ss_pred             C
Q psy13615        261 G  261 (263)
Q Consensus       261 g  261 (263)
                      |
T Consensus       291 g  291 (322)
T 2fb9_A          291 G  291 (322)
T ss_dssp             C
T ss_pred             C
Confidence            8

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=83.99  E-value=1.5  Score=39.72  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=24.1

Q ss_pred             cCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        224 EGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       224 eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      +.+.|.|++.+.++.+..+       .+.++|+|+|+|+
T Consensus       246 ~~lg~~G~~~ve~~~~~~g-------~~~v~EinpR~~~  277 (377)
T 3orq_A          246 QSIHFIGTFTVEFFIDSNN-------QLYVNEIAPRPHN  277 (377)
T ss_dssp             TTSCCCEEEEEEEEEETTC-------CEEEEEEESSCCG
T ss_pred             HHCCCeEEEEEEEEEeCCC-------cEEEEEeeCCcCC
Confidence            3456799999999965322       2568999999985

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=83.00  E-value=1.4  Score=40.93  Aligned_cols=58  Identities=24%  Similarity=0.356  Sum_probs=41.9

Q ss_pred             ccCCccEEEEEc-Cc-chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEee
Q psy13615          7 MVQRKRVAVLIS-GT-GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVST   69 (263)
Q Consensus         7 m~~~~riavl~S-G~-Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~   69 (263)
                      |..|+||++|.| |+ |++.-.++.+   ..+  ..+++++.+++.-....+.+++++++...+.
T Consensus         1 m~~m~rI~ILGsTGSIG~~~l~vi~~---~p~--~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~   60 (388)
T 1r0k_A            1 MSQPRTVTVLGATGSIGHSTLDLIER---NLD--RYQVIALTANRNVKDLADAAKRTNAKRAVIA   60 (388)
T ss_dssp             -CCCEEEEEETTTSHHHHHHHHHHHH---TGG--GEEEEEEEESSCHHHHHHHHHHTTCSEEEES
T ss_pred             CCCceEEEEECCCeEeHHHHHHHHHh---CcC--cEEEEEEEcCCCHHHHHHHHHHcCCcEEEEc
Confidence            555689999999 88 9887777743   112  2588888777655566788999998877664

>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A

Probab=82.39  E-value=2.4  Score=40.80  Aligned_cols=56  Identities=16%  Similarity=0.075  Sum_probs=38.0

Q ss_pred             EECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        194 AYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       194 a~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      ..+|.+.++++..+++. +...++.+++     .|+|...+.++.+..+       ...++|+|+|++.
T Consensus       312 e~~Pa~~l~~~~~~~l~-~~a~~~~~al-----G~~G~~~VEf~~d~dg-------~~~~lEiNpR~~~  367 (540)
T 3glk_A          312 EEAPATIAPLAIFEFME-QCAIRLAKTV-----GYVSAGTVEYLYSQDG-------SFHFLELNPRLQV  367 (540)
T ss_dssp             EEESCTTSCHHHHHHHH-HHHHHHHHHH-----TCCEEEEEEEEEETTS-------CEEEEEEECSCCT
T ss_pred             EecCCCCCCHHHHHHHH-HHHHHHHHHc-----CCccceEEEEEEcCCC-------CEEEEEEECCCCC
Confidence            44687777888877775 4444444444     4779999999843222       2578999999973

>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*

Probab=81.90  E-value=2.6  Score=41.11  Aligned_cols=57  Identities=16%  Similarity=0.054  Sum_probs=38.8

Q ss_pred             eEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        193 GAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       193 ga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      ...+|.+.++++..+++. +....+.+.+     .|+|...+.++.+..+       ...++|+|+|++.
T Consensus       327 ie~aPa~~l~~~~~~~i~-~~A~~~a~al-----Gy~G~~~VEfl~d~dG-------~~yflEINpRl~~  383 (587)
T 3jrx_A          327 VEEAPATIAPLAIFEFME-QCAIRLAKTV-----GYVSAGTVEYLYSQDG-------SFHFLELNPRLQV  383 (587)
T ss_dssp             EEEESCCSSCHHHHHHHH-HHHHHHHHHH-----TCCEEEEEEEEECSSS-------CEEEEEEESSCCT
T ss_pred             eEecCCCCCCHHHHHHHH-HHHHHHHHHc-----CCcceeEEEEEEeCCC-------CEEEEEEeCCCCC
Confidence            344688877888877775 4444444444     4789999999854322       2578999999973

>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*

Probab=81.86  E-value=2.3  Score=39.25  Aligned_cols=56  Identities=16%  Similarity=0.121  Sum_probs=36.3

Q ss_pred             eEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        193 GAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       193 ga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      +..+|.+.++++..+++. +...+++++     +.|.|...+.++.+..+       ++.++|+|+|++
T Consensus       243 ~~~~p~~~l~~~~~~~l~-~~a~~~~~~-----lg~~G~~~ve~~~~~~g-------~~~~iEiNpR~~  298 (446)
T 3ouz_A          243 IEESPAILLDEKTRTRLH-ETAIKAAKA-----IGYEGAGTFEFLVDKNL-------DFYFIEMNTRLQ  298 (446)
T ss_dssp             EEEESCTTSCHHHHHHHH-HHHHHHHHH-----TTCCEEEEEEEEECTTC-------CEEEEEEESSCC
T ss_pred             EEECCCCCCCHHHHHHHH-HHHHHHHHH-----cCCCCceEEEEEEeCCC-------CEEEEEeECCCC
Confidence            345677667777776665 333333333     34679888899854431       457899999996

>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}

Probab=81.63  E-value=5.2  Score=35.84  Aligned_cols=66  Identities=15%  Similarity=0.160  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        182 NNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       182 ~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      +.+.....+......|.+ ++++..++++ ++-.++.+++   |  +.|..-+.++.+..| +      +.++|+|.++|
T Consensus       253 d~~~k~~~~~~~~~~pa~-l~~~~~~~i~-~~A~~~~~aL---g--~~G~~~VDf~~~~dg-~------~~vlEvNt~PG  318 (357)
T 4fu0_A          253 DYTEKYTLKSSKIYMPAR-IDAEAEKRIQ-EAAVTIYKAL---G--CSGFSRVDMFYTPSG-E------IVFNEVNTIPG  318 (357)
T ss_dssp             TSCSBCSSCCEEEESSCS-CCHHHHHHHH-HHHHHHHHHT---T--CCEEEEEEEEECTTC-C------EEEEEEESSCC
T ss_pred             cccccccCCCceEecCCC-CCHHHHHHHH-HHHHHHHHHh---C--CcceEEEEEEEeCCC-C------EEEEEEeCCCC
Confidence            333344444444455655 4677766664 3333444433   4  568888888854432 1      46899999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	263
d1clia1	166	d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide s	2e-12
d1meoa_	205	c.65.1.1 (A:) Glycinamide ribonucleotide transform	2e-09
d1jkxa_	209	c.65.1.1 (A:) Glycinamide ribonucleotide transform	2e-09
d1clia2	175	d.139.1.1 (A:171-345) Aminoimidazole ribonucleotid	3e-09

>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Escherichia coli [TaxId: 562]} Length = 166

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: PurM N-terminal domain-like
family: PurM N-terminal domain-like
domain: Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 14/122 (11%)

Query: 13  VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNK---HNVEGLNIARNAGIPTKVST 69
           +     G GT L+  ++    R D +  ++V +  N       E L          K+  
Sbjct: 56  LVSGTDGVGTKLRLAMD--LKRHDTIGIDLVAMCVNDLVVQGAEPLFFLDYYATG-KLDV 112

Query: 70  YKHTLILSNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKAS 129
              + ++S          A+    +  S  GGETAE+PG+Y   DYD+AGF VG VEK+ 
Sbjct: 113 DTASAVISGI--------AEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSE 164

Query: 130 LL 131
           ++
Sbjct: 165 II 166

>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 2e-09
 Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
          RVAVLISGTG+NL++L+++T  R     A+I +V+SNK  V GL+ A  AGIPT+V  +K
Sbjct: 2  RVAVLISGTGSNLQALIDST--REPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHK 59

Query: 72 H 72
           
Sbjct: 60 L 60

>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYK 71
           + VLISG G+NL+++++A   +++ ++  +  V SNK +  GL  AR AGI T      
Sbjct: 2  NIVVLISGNGSNLQAIIDAC--KTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIAS 59

Query: 72 H 72
           
Sbjct: 60 A 60

>d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain {Escherichia coli [TaxId: 562]} Length = 175

class: Alpha and beta proteins (a+b)
fold: PurM C-terminal domain-like
superfamily: PurM C-terminal domain-like
family: PurM C-terminal domain-like
domain: Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.8 bits (126), Expect = 3e-09
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 24/115 (20%)

Query: 135 KDVAAGDVVIALPSSGIHSNGFSLV------------LCFTDGKTVK----------VMP 172
             V+ GDV+IAL SSG HSNG+SLV                DGK +           V  
Sbjct: 3   SKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDGKPLADHLLAPTRIYVKS 62

Query: 173 PSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILM--RVIKKMIAEG 225
             +  ++   +     TGG        +L +  +  I ++      V   +   G
Sbjct: 63  VLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQWPEVFNWLQTAG 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d1jkxa_	209	Glycinamide ribonucleotide transformylase, GART {E	99.94
d1meoa_	205	Glycinamide ribonucleotide transformylase, GART {H	99.93
d1gsoa3	224	Glycinamide ribonucleotide synthetase (GAR-syn), d	99.87
d1clia1	166	Aminoimidazole ribonucleotide synthetase (PurM) N-	99.57
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	99.54
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	99.49
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	99.46
d1vkza3	220	Glycinamide ribonucleotide synthetase (GAR-syn), d	98.99
d1zgha2	164	Methionyl-tRNAfmet formyltransferase {Clostridium	98.23
d1clia2	175	Aminoimidazole ribonucleotide synthetase (PurM) C-	97.02
d1a9xa5	275	Carbamoyl phosphate synthetase (CPS), large subuni	96.49
d2r7ka2	238	5-formaminoimidazole-4-carboxamide ribonucleotide	95.9
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.89
d2j9ga3	216	Biotin carboxylase (BC), domain 2 {Escherichia col	94.45
d2z1ea1	113	Hydrogenase expression/formation protein HypE {The	93.35
d1a9xa6	259	Carbamoyl phosphate synthetase (CPS), large subuni	91.13
d1ulza3	214	Biotin carboxylase (BC), domain 2 {Aquifex aeolicu	91.12
d2r85a2	235	5-formaminoimidazole-4-carboxamide ribonucleotide	90.13
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	89.27
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	88.25
d3etja3	198	N5-carboxyaminoimidazole ribonucleotide synthetase	87.93
d1w96a3	267	Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye	82.0

>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.3e-27  Score=203.90  Aligned_cols=174  Identities=24%  Similarity=0.295  Sum_probs=143.5

Q ss_pred             ccEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhccc
Q psy13615         11 KRVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAK   89 (263)
Q Consensus        11 ~riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~   89 (263)
                      +|||||+||+||||++|+++  .+.+.++++|++|+||++++.++++|++.++|.+......+.+. .+++++++.+  +
T Consensus         1 MkIaVl~SG~GSnL~aLl~a--~~~~~l~~~I~~Visn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~   76 (209)
T d1jkxa_           1 MNIVVLISGNGSNLQAIIDA--CKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEI--D   76 (209)
T ss_dssp             CEEEEEESSCCHHHHHHHHH--HHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHH--G
T ss_pred             CEEEEEEecCcHHHHHHHHH--HHcCCCCCEEEEEEeCCCCcccchhhhccccceeeeeccccccccchHHHHHHHH--H
Confidence            48999999999999999976  45577889999999999999999999999999999887777665 7777777877  6


Q ss_pred             cCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccccce-eEEE
Q psy13615         90 YSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNGFSL-VLCF  162 (263)
Q Consensus        90 ~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl-~~ai  162 (263)
                      .                   +++|+++++|||+.+    ++  +..++|+|||+        ||.    ++|.++ .|++
T Consensus        77 ~-------------------~~~Dliv~~g~~~il~~~~l~~~~~~~iN~Hpsl--------LP~----~rG~~p~~~~i  125 (209)
T d1jkxa_          77 M-------------------YAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSL--------LPK----YPGLHTHRQAL  125 (209)
T ss_dssp             G-------------------GCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSC--------TTS----CCSSCHHHHHH
T ss_pred             h-------------------cCCCEEEEeeeeEecChhhhcccccCEEEeCCch--------hcc----cCCcCchhHHH
Confidence            7                   899999999999843    22  45689999999        998    333334 4455


Q ss_pred             ecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcCC
Q psy13615        163 TDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEGT  226 (263)
Q Consensus       163 ~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg~  226 (263)
                      .+|  .+.+|+| .|    ++|++.|+|+++.|..+++.++|+.+++.++       ++.++++.+.+..+
T Consensus       126 ~~g--~~~~G~t-~h----~~~~~~D~G~Ii~q~~~~i~~~d~~~~l~~k~~~~e~~l~~~~i~~i~~~~i  189 (209)
T d1jkxa_         126 ENG--DEEHGTS-VH----FVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRL  189 (209)
T ss_dssp             HTT--CSEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HCC--Ceeecce-EE----EecCCCCcccEeeEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence            655  5568999 47    9999999999999999999999888887665       58889999876443

>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-26  Score=198.84  Aligned_cols=172  Identities=27%  Similarity=0.321  Sum_probs=138.7

Q ss_pred             cEEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH-HHHHHHHHHhcccc
Q psy13615         12 RVAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL-SNSLQVMQKVGAKY   90 (263)
Q Consensus        12 riavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~-~~~~~i~~~l~~~~   90 (263)
                      |||||+||+||||++|+++  ++.+.++++|++|+||++++.++++|+..++|........+..+ ++..++.+.+  +.
T Consensus         2 ri~vl~SG~Gsnl~aLl~~--~~~~~l~~~I~~Vitn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~   77 (205)
T d1meoa_           2 RVAVLISGTGSNLQALIDS--TREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVL--EE   77 (205)
T ss_dssp             EEEEEESSSCTTHHHHHHH--HHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHH--HH
T ss_pred             EEEEEEeCCcHhHHHHHHH--HhcCCCCCEEEEEEECCccccccccccccccccccccccccchhhhHHHHHHHHH--hh
Confidence            8999999999999999976  45677889999999999999999999999999998877665554 7777777777  67


Q ss_pred             CCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-CCCCccccceeEEEe
Q psy13615         91 SDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-SGIHSNGFSLVLCFT  163 (263)
Q Consensus        91 ~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~G~~~~g~Sl~~ai~  163 (263)
                                         +++|++++||||+.+    ++  +..++|.|||+        ||. .|.+..    .|++.
T Consensus        78 -------------------~~~Dliv~~g~~~il~~~~l~~~~~~~iN~Hpsl--------LP~~rG~~~~----~~ai~  126 (205)
T d1meoa_          78 -------------------FSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSL--------LPSFKGSNAH----EQALE  126 (205)
T ss_dssp             -------------------TTCCEEEEESCCSCCCHHHHHHTTTSEEEEESSS--------TTSSCSSCHH----HHHHH
T ss_pred             -------------------cccceeeeechhcccCHHHHHhccCCeeecCccc--------cchhhhhhhH----HHHHh
Confidence                               899999999999843    22  34689999999        998 554433    34556


Q ss_pred             cCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhcC
Q psy13615        164 DGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAEG  225 (263)
Q Consensus       164 dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~eg  225 (263)
                      +|  ...+|+| .|    .+|++.|+|++..|..+++.++|+.+++.++       +++++++.+.+..
T Consensus       127 ~g--~~~~G~t-ih----~v~~~iD~G~Ii~q~~~~I~~~dt~~~L~~k~~~~~~~l~~~~l~~i~~g~  188 (205)
T d1meoa_         127 TG--VTVTGCT-VH----FVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGT  188 (205)
T ss_dssp             HT--CSEEEEE-EE----ECCC---CCCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cC--Cccccee-EE----eecCCCCCCcEeEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            55  4558999 47    9999999999999999999999998887765       5788888886543

>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=7.6e-23  Score=177.06  Aligned_cols=111  Identities=35%  Similarity=0.527  Sum_probs=98.8

Q ss_pred             cEEEEecCCCCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHH
Q psy13615        141 DVVIALPSSGIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKK  220 (263)
Q Consensus       141 ~~ii~Lp~~G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~  220 (263)
                      .++|+-...|   .++|+. +++||..+.++++++||||+++.|.||+|||||+++|.|..++++.+++.++++.+++++
T Consensus        80 ~vliEefl~G---~E~s~~-~i~dg~~~~~~~~~~d~kr~~d~~~gp~tggmg~~~P~p~~~~~l~~~~~~~i~~~~~~~  155 (224)
T d1gsoa3          80 RIVIEEFLDG---EEASFI-VMVDGEHVLPMATSQDHKRVGDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKG  155 (224)
T ss_dssp             CEEEEECCCE---EEEEEE-EEEESSCEEEEEEEEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHH
T ss_pred             eEEeeccccc---ccceeE-EEeccCceEeeecccccccccccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            3555555555   457775 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCeEEEEeeccccccCCceeeecCc-ceeeeeCCCCCCC
Q psy13615        221 MIAEGTPFVGEKKRGFTEGTVTAKVFSSRN-RREKEDNPEEGDP  263 (263)
Q Consensus       221 ~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~-~~~~e~n~~~gdp  263 (263)
                      ++++|++|+|++|+++|        +|..| +.|+|+|+|||||
T Consensus       156 ~~~~g~~~~G~l~~~~m--------it~~G~p~vlE~N~R~Gdp  191 (224)
T d1gsoa3         156 MAAEGNTYTGFLYAGLM--------IDKQGNPKVIEFNCRFGDL  191 (224)
T ss_dssp             HHHTTCCCEEEEEEEEE--------EETTCCEEEEEEESSCCTT
T ss_pred             HHhcCceeeeeecccee--------eeeCCCEEEEEEecCCCCC
Confidence            99999999999999999        45554 6778999999998

>d1clia1 d.79.4.1 (A:5-170) Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: PurM N-terminal domain-like
family: PurM N-terminal domain-like
domain: Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=8.5e-17  Score=132.47  Aligned_cols=107  Identities=35%  Similarity=0.554  Sum_probs=92.8

Q ss_pred             EEEEEcCcchhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCH--HHHHHHHHHh--cc
Q psy13615         13 VAVLISGTGTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLIL--SNSLQVMQKV--GA   88 (263)
Q Consensus        13 iavl~SG~Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~--~~~~~i~~~l--~~   88 (263)
                      ++.-..|-||+++-..+  ..++..+++|+++++.|+--|.|.+       |.+++||.+.++.  +..+++++++  +|
T Consensus        56 Lv~~tDGVGTK~~iA~~--~~~~~~iG~DlVam~vNDil~~GA~-------Pl~flDY~a~~~~~~~~~~~iv~Gi~~ac  126 (166)
T d1clia1          56 LVSGTDGVGTKLRLAMD--LKRHDTIGIDLVAMCVNDLVVQGAE-------PLFFLDYYATGKLDVDTASAVISGIAEGC  126 (166)
T ss_dssp             EEEEEEECCTHHHHHHH--TTCCSSHHHHHHHHHHHHHGGGTCE-------EEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEEeecccchhhHHHHH--hhhhcCcchhhHhhccchhhhccHH-------HHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence            33344455999996663  3567788999999999999999998       9999999988664  8889999999  88


Q ss_pred             ccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEeecCCcC
Q psy13615         89 KYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVEKASLL  131 (263)
Q Consensus        89 ~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~~~~~i  131 (263)
                      ++   ++|+|+|||||+||++|+.+.++||||+.|+++++++|
T Consensus       127 ~~---~~~~LiGGETAempgvy~~~~~DLaG~~vGivek~~ii  166 (166)
T d1clia1         127 LQ---SGCSLVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEII  166 (166)
T ss_dssp             HH---HTCEEEEEEEEECTTTSCTTCEEEEEEEEEEEEGGGCC
T ss_pred             HH---hCCcccccccccccCcCCCCCEEEEeEEEEEEeccccC
Confidence            98   99999999999999999999999999999999987764

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2e-15  Score=127.97  Aligned_cols=167  Identities=16%  Similarity=0.093  Sum_probs=116.0

Q ss_pred             ccEEEEEcCc-c-hhHHHHHHHhccccCCCCceEEEEEecCC----CChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHH
Q psy13615         11 KRVAVLISGT-G-TNLKSLLEATSNRSDIMRAEIVLVVSNKH----NVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQ   84 (263)
Q Consensus        11 ~riavl~SG~-G-snl~al~~~~~~~~~~l~~~iv~Visn~~----~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~   84 (263)
                      +||++|+|+. | ..|+.|+     +.   +.+|++|+|..+    ..+..+.|++++||++........+ ....++++
T Consensus         1 MkI~~~G~~~~~~~~l~~L~-----~~---~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~-~~~~~~~~   71 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLR-----KE---GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKG-QALPDVVA   71 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHH-----HT---TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETT-EECHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHH-----HC---CCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccc-cccHHHHH
Confidence            4899996654 2 2233333     21   369999998421    2356789999999988775433222 23334556


Q ss_pred             HhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccccce
Q psy13615         85 KVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNGFSL  158 (263)
Q Consensus        85 ~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl  158 (263)
                      .+  ++                   +++|+++++||++.+    ++  +..++|+|||+        ||.    ++|.++
T Consensus        72 ~l--~~-------------------~~~Dliv~~~~~~ii~~~~l~~~~~g~iN~H~sl--------LP~----yrG~~p  118 (203)
T d2bw0a2          72 KY--QA-------------------LGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSL--------LPR----HRGASA  118 (203)
T ss_dssp             HH--HT-------------------TCCSEEEESSCSSCCCHHHHTCSTTCEEEEESSC--------TTT----TBSSCH
T ss_pred             HH--HH-------------------hCCCceEEeecchhhhhhhhhhhhhHhhhhhhcc--------ccc----ccccce
Confidence            66  56                   789999999999732    22  34589999999        998    344444


Q ss_pred             -eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH--------HHHHHHHHHHhcCC
Q psy13615        159 -VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT--------ILMRVIKKMIAEGT  226 (263)
Q Consensus       159 -~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~--------il~~~i~~~~~eg~  226 (263)
                       .|++.+|.  ..+|+| .|    ..+++.|+|++..|..+++.++|+.+++.++        .+.++++.+.+...
T Consensus       119 i~wai~~g~--~~~GvT-ih----~~~~~~D~G~Ii~q~~~~i~~~dt~~~l~~k~l~~~~~~~~~~~l~~i~~g~~  188 (203)
T d2bw0a2         119 INWTLIHGD--KKGGFS-IF----WADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKA  188 (203)
T ss_dssp             HHHHHHTTC--SEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHTTTHHHHHHHHHHHHHHHHTCC
T ss_pred             eeeeecccc--cccCce-eE----EeccccccchhheeecccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence             55777664  458888 46    8999999999999999999888887776544        46777777765433

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1e-14  Score=123.57  Aligned_cols=160  Identities=16%  Similarity=0.159  Sum_probs=114.0

Q ss_pred             ccEEEEEcCc-chh-HHHHHHHhccccCCCCceEEEEEecCCC-------ChhhHHHHHcCCCEEEeeCCCCCCHHHHHH
Q psy13615         11 KRVAVLISGT-GTN-LKSLLEATSNRSDIMRAEIVLVVSNKHN-------VEGLNIARNAGIPTKVSTYKHTLILSNSLQ   81 (263)
Q Consensus        11 ~riavl~SG~-Gsn-l~al~~~~~~~~~~l~~~iv~Visn~~~-------a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~   81 (263)
                      +||++|+++. |.+ |++|+++        +.+|++|+|..+.       +...+.|+++|||++..+..+  +    ++
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~--------g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~--~----~~   66 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAA--------GYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVN--H----PL   66 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHT--------TCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCC--S----HH
T ss_pred             CeEEEEecCHHHHHHHHHHHHC--------CCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceeccccc--c----hh
Confidence            4799998766 543 6666521        3699999985322       345789999999987654332  3    22


Q ss_pred             HHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecCCCCCccc
Q psy13615         82 VMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPSSGIHSNG  155 (263)
Q Consensus        82 i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~~G~~~~g  155 (263)
                      +++.+  +.                   .++|+++++||+..+    ++  +..++|.||++        ||.    ++|
T Consensus        67 ~~~~i--~~-------------------~~~Dlii~~g~~~ii~~~il~~~~~~~iN~H~sl--------LP~----yrG  113 (203)
T d2blna2          67 WVERI--AQ-------------------LSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSL--------LPK----YRG  113 (203)
T ss_dssp             HHHHH--HH-------------------TCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSC--------TTT----TEE
T ss_pred             hhhhh--hh-------------------hcccceeeeecccchhcccchhhHHHHHHHhhhc--------chh----hhh
Confidence            33445  45                   789999999998632    33  34579999999        998    334


Q ss_pred             cce-eEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHHhc
Q psy13615        156 FSL-VLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMIAE  224 (263)
Q Consensus       156 ~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~~e  224 (263)
                      .++ .|++.+|.  ..+|+| .|    ..|++.|+|++..|..+++.++|+..++.++       ++.++++.+.+.
T Consensus       114 ~~p~~wai~~g~--~~~G~T-ih----~i~~~iD~G~Il~q~~~~i~~~~t~~~l~~k~~~~~~~l~~~~l~~i~~g  183 (203)
T d2blna2         114 RAPLNWVLVNGE--TETGVT-LH----RMVKRADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHG  183 (203)
T ss_dssp             SCHHHHHHHTTC--SEEEEE-EE----ECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhccc--ccccce-eE----EeeccCCCccceeeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            333 56777765  447888 46    8999999999999999999888888877655       467777777653

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=4.5e-14  Score=119.33  Aligned_cols=162  Identities=17%  Similarity=0.175  Sum_probs=114.0

Q ss_pred             CCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCC----------CChhhHHHHHcCCCEEEeeCCCCCCH
Q psy13615          9 QRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKH----------NVEGLNIARNAGIPTKVSTYKHTLIL   76 (263)
Q Consensus         9 ~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~----------~a~gl~~A~~~gIP~~~v~~~~~~~~   76 (263)
                      .++||+||+|+.  ...|++|++.        +.++++|+|..+          .....+.+.++++|........  + 
T Consensus         2 ~~mKI~f~G~~~~~~~~L~~L~~~--------~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-   70 (206)
T d1fmta2           2 ESLRIIFAGTPDFAARHLDALLSS--------GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLR--P-   70 (206)
T ss_dssp             CCCEEEEEECSHHHHHHHHHHHHT--------TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSC--S-
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhC--------CCCEEEEEeCCCcccccCccccccchhhhhhccCcccccccccc--c-
Confidence            578999997764  2345555521        358999997521          1244678999999987765433  2 


Q ss_pred             HHHHHHHHHhccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEE----ee--cCCcCCccccccCCcEEEEecC-C
Q psy13615         77 SNSLQVMQKVGAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGA----VE--KASLLPKVKDVAAGDVVIALPS-S  149 (263)
Q Consensus        77 ~~~~~i~~~l~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~----~~--~~~~in~hpsl~~g~~ii~Lp~-~  149 (263)
                      +..   .+.+  +.                   +++|+++++||++.+    ++  +..++|+|||+        ||. .
T Consensus        71 ~~~---~~~~--~~-------------------~~~d~~v~~~~~~ii~~~il~~~k~g~iN~Hps~--------LP~yR  118 (206)
T d1fmta2          71 QEN---QQLV--AE-------------------LQADVMVVVAYGLILPKAVLEMPRLGCINVHGSL--------LPRWR  118 (206)
T ss_dssp             HHH---HHHH--HH-------------------TTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSS--------TTTTB
T ss_pred             hhh---HHHH--hh-------------------hcceEEEeeccccccchhhHhcCCCCeeecCchh--------hHhhh
Confidence            222   2334  45                   789999999999843    22  34579999999        998 4


Q ss_pred             CCCccccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHH-------HHHHHHHHHH
Q psy13615        150 GIHSNGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDT-------ILMRVIKKMI  222 (263)
Q Consensus       150 G~~~~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~-------il~~~i~~~~  222 (263)
                      |.+..    .|++.+|.  ..+|+| .|    +.|+|.|||+++.|..+++..+|+..++.++       ++.++++.+.
T Consensus       119 G~~pi----~wai~nge--~~~GvT-~h----~i~~~iD~G~Ii~q~~~~i~~~dt~~~l~~k~~~~~~~l~~~~i~~i~  187 (206)
T d1fmta2         119 GAAPI----QRSLWAGD--AETGVT-IM----QMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLA  187 (206)
T ss_dssp             SSCHH----HHHHHHTC--SEEEEE-EE----ECCSSSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhh----hhHHHcCC--ceecee-EE----EeccccChHHhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44432    55777664  447888 47    9999999999999999999999888887766       3566667665


Q ss_pred             hc
Q psy13615        223 AE  224 (263)
Q Consensus       223 ~e  224 (263)
                      +.
T Consensus       188 ~~  189 (206)
T d1fmta2         188 DG  189 (206)
T ss_dssp             HT
T ss_pred             cC
Confidence            43

>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=6.7e-10  Score=93.02  Aligned_cols=99  Identities=27%  Similarity=0.453  Sum_probs=81.9

Q ss_pred             cccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Q psy13615        154 NGFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKK  233 (263)
Q Consensus       154 ~g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~  233 (263)
                      .++++. .+++|..+.+++++++|++.+..+.+.++++++.+.+.+. +..+ ....++++..+.+++...+..++|.++
T Consensus        90 ~e~~v~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~a~~~~~~~~~G~~~  166 (220)
T d1vkza3          90 NELSAM-AVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEI-PSDT-IKKIEELFDKTLWGVEKEGYAYRGFLY  166 (220)
T ss_dssp             EEEEEE-EEEETTEEEECCCCEECCEEETTTEEEECSCSEEEECCCC-CHHH-HHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             ccceeE-EEEeCCEEEEcccccccccccccccccccccccccccCCc-cchh-hHHHHHHHHHHHHHHhhhhhhhhccce
Confidence            346653 7788888899999999999999999999999999988775 3333 334468899999999999999999999


Q ss_pred             eccccccCCceeeecCcceeeeeCCCCCCC
Q psy13615        234 RGFTEGTVTAKVFSSRNRREKEDNPEEGDP  263 (263)
Q Consensus       234 ~gl~~~~~~~~~~~~~~~~~~e~n~~~gdp  263 (263)
                      +.++.        +..++.|+|+|+|+|||
T Consensus       167 ~d~~~--------~~~gp~viEiN~R~G~~  188 (220)
T d1vkza3         167 LGLML--------HDGDPYILEYNVRLGDP  188 (220)
T ss_dssp             EEEEE--------ETTEEEEEEEESSCCTT
T ss_pred             eEEEe--------eCCCEEEEEEECCCCCC
Confidence            99994        44455678999999998

>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.23  E-value=8.5e-08  Score=77.65  Aligned_cols=98  Identities=17%  Similarity=0.077  Sum_probs=69.9

Q ss_pred             cCCCcEEEeeeeeE----EeecCCcCCccccccCCcEEEEecCCCCCccccce-eEEEecCcceeecCCccccccccCCC
Q psy13615        110 YQPGDYDLAGFAVG----AVEKASLLPKVKDVAAGDVVIALPSSGIHSNGFSL-VLCFTDGKTVKVMPPSQDHKRKYNND  184 (263)
Q Consensus       110 ~~~d~i~LAG~m~~----~~~~~~~in~hpsl~~g~~ii~Lp~~G~~~~g~Sl-~~ai~dg~~~~~~~~t~dhkr~~~~d  184 (263)
                      ..+|+++++||...    ++++..++|.|||+        ||.    ++|.++ .|++..|.  ...|+| .|    ..+
T Consensus        46 ~~~D~ii~~g~~~ii~~~il~~~~~in~H~s~--------LP~----yRG~~p~~wai~~~~--~~~Gvt-ih----~~~  106 (164)
T d1zgha2          46 INPEYILFPHWSWIIPKEIFENFTCVVFHMTD--------LPF----GRGGSPLQNLIERGI--KKTKIS-AI----KVD  106 (164)
T ss_dssp             HCCSEEEESSCCSCCCHHHHTTSCEEEEESSC--------TTT----TEESCHHHHHHHTTC--CEEEEE-EE----ECC
T ss_pred             cCCCEEEEeCcccccCHHHHhhCCCccCCCCc--------hhc----ccccccccccccccc--ccccce-eE----Eec
Confidence            67999999999873    23345679999999        998    444444 56777654  457888 46    899


Q ss_pred             CCCCCCCeeEECcccCCC--HHHHHHHHHHHHHHHHHHHHhcCC
Q psy13615        185 KGPNTGGMGAYCPCDILT--EAQKKEIHDTILMRVIKKMIAEGT  226 (263)
Q Consensus       185 ~G~dTGgmga~~pv~i~~--~~~~~~i~~~il~~~i~~~~~eg~  226 (263)
                      ++.|||++..|..+++..  .+...++...++..++..+.+...
T Consensus       107 ~~iD~G~Ii~q~~~~i~~~~~~~~~~~~~~~~~~~i~~i~~~~~  150 (164)
T d1zgha2         107 GGIDTGDIFFKRDLDLYGTAEEIFMRASKIIFNDMIPELLTKRP  150 (164)
T ss_dssp             SSSSCSCEEEEEEEECCSCHHHHHHHHHHHHHHTHHHHHHHHCC
T ss_pred             cCCCcCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999988853  233334444456667777765433

>d1clia2 d.139.1.1 (A:171-345) Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: PurM C-terminal domain-like
superfamily: PurM C-terminal domain-like
family: PurM C-terminal domain-like
domain: Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=2.7e-05  Score=63.28  Aligned_cols=29  Identities=59%  Similarity=0.794  Sum_probs=26.4

Q ss_pred             cccCCcEEEEecCCCCCccccceeEEEec
Q psy13615        136 DVAAGDVVIALPSSGIHSNGFSLVLCFTD  164 (263)
Q Consensus       136 sl~~g~~ii~Lp~~G~~~~g~Sl~~ai~d  164 (263)
                      ++++||+||+|||+|+|+||||+.|++++
T Consensus         4 ~i~~GDviiGl~SsG~HSNGySLvRkil~   32 (175)
T d1clia2           4 KVSDGDVLIALGSSGPHSNGYSLVRKILE   32 (175)
T ss_dssp             TCCTTCEEEEEECSSSTTSSHHHHHHHHH
T ss_pred             ccCCCCEEEEecCCCCCcChHHHHHHHHH
Confidence            46899999999999999999999888775

>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0057  Score=51.89  Aligned_cols=90  Identities=16%  Similarity=0.206  Sum_probs=62.4

Q ss_pred             cceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeec
Q psy13615        156 FSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRG  235 (263)
Q Consensus       156 ~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~g  235 (263)
                      +++ ..+.++.+.....+..+|    +...+.++|.|+..+|.|.++++..+++. ..   +.+.+...|.. .|...+.
T Consensus        89 ~~v-~~~~d~~g~~~~~~~~~~----~~~~~~~~~~~~~~aP~~~L~~~~~~~i~-~~---a~~i~~~lg~~-~G~~~~e  158 (275)
T d1a9xa5          89 YEM-EVVRDKNDNCIIVCSIEN----FDAMGIHTGDSITVAPAQTLTDKEYQIMR-NA---SMAVLREIGVE-TGGSNVQ  158 (275)
T ss_dssp             EEE-EEEECTTCCEEEEEEEEE----SSCTTSCGGGSCEEESCCSCCHHHHHHHH-HH---HHHHHHHHTCC-SEEEEEE
T ss_pred             hee-eeEEecCCCEEEEEeecc----ccccCcccCceeEEcCCCcCCHHHHHHHH-HH---HHHHHHHcCce-ECceEEE
Confidence            444 366676666655566567    77889999999999999999988877665 22   33333333432 4888888


Q ss_pred             cccccCCceeeecCcceeeeeCCCCC
Q psy13615        236 FTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       236 l~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      +.....++++      -++|.|+|..
T Consensus       159 f~~~~~~~~~------~~iE~npR~~  178 (275)
T d1a9xa5         159 FAVNPKNGRL------IVIEMNPRVS  178 (275)
T ss_dssp             EEECTTTCCE------EEEEEESSCC
T ss_pred             EEEeCCCCEE------EEEEecCCCC
Confidence            8766666655      4899999964

>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Methanocaldococcus jannaschii [TaxId: 2190]

Probab=95.90  E-value=0.0076  Score=49.54  Aligned_cols=71  Identities=7%  Similarity=-0.136  Sum_probs=54.1

Q ss_pred             CCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        183 NDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAE-GTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       183 ~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~e-g~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      ...+.+.+.+....|-+.++++..+++. ++...+++++... +..|+|...+.++.+..+       .+.|+|+|+|+|
T Consensus       122 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~-~~~~~i~~~l~~~~~~~~~G~~~ve~~~~~dg-------~~~viEinpR~~  193 (238)
T d2r7ka2         122 LEMNINPSYVITGNIPVVIRESLLPQVF-EMGDKLVAKAKELVPPGMIGPFCLQSLCNENL-------ELVVFEMSARVD  193 (238)
T ss_dssp             HTCCCCCCEEEEEEEECCCCGGGHHHHH-HHHHHHHHHHHHHSTTCCCEEEEEEEEECTTS-------CEEEEEEESSBC
T ss_pred             eccCccccCccccccCccccHHHHHHHH-HHHHHHHHHHHHhcccCccccccHhhHhhcCC-------CEEEEEEECCCC
Confidence            3457788888887777778888888885 6667777777644 667999999999955443       246889999985

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.89  E-value=0.0061  Score=47.78  Aligned_cols=55  Identities=29%  Similarity=0.421  Sum_probs=42.2

Q ss_pred             ccCCccEEEEEcCc-chh-HHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEE
Q psy13615          7 MVQRKRVAVLISGT-GTN-LKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKV   67 (263)
Q Consensus         7 m~~~~riavl~SG~-Gsn-l~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~   67 (263)
                      |..+.|++|+++|. |+. +..+++.    ..  ..++++|.+-++...++++|+++|+|+..
T Consensus         1 M~kkirvaIIGaG~ig~~~~~~~l~~----~~--~~el~avas~~~~~~~~~~a~~~~i~~~~   57 (157)
T d1nvmb1           1 MNQKLKVAIIGSGNIGTDLMIKVLRN----AK--YLEMGAMVGIDAASDGLARAQRMGVTTTY   57 (157)
T ss_dssp             CCSCEEEEEECCSHHHHHHHHHHHHH----CS--SEEEEEEECSCTTCHHHHHHHHTTCCEES
T ss_pred             CCCCcEEEEEcCcHHHHHHHHHHHhh----CC--cceEEEEEecchhccchhhhhhcCCcccc
Confidence            78888999999997 664 4444421    12  36899998877788999999999999763

>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.031  Score=45.28  Aligned_cols=63  Identities=13%  Similarity=-0.031  Sum_probs=42.9

Q ss_pred             CCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        185 KGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       185 ~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      .++.++.++..+|.+..+++..+.+. +    ...++. ....+.|...+.|+.        +..++.++|+|+|++
T Consensus       118 ~~~~~~~~~~~~P~~~~~~~~~~~~~-~----~~~~~~-~~~~~~G~~~~e~~~--------~~~~~~viEvnpR~~  180 (216)
T d2j9ga3         118 MQRRHQKVVEEAPAPGITPELRRYIG-E----RCAKAC-VDIGYRGAGTFEFLF--------ENGEFYFIEMNTRIQ  180 (216)
T ss_dssp             EEETTEEEEEEESCTTCCHHHHHHHH-H----HHHHHH-HHTTCEEEEEEEEEE--------ETTEEEEEEEECSCC
T ss_pred             cccccCCeEEeccCccccchhhhhhH-H----HHHHHH-HHcCccCcceeEeEe--------cCCeEEEEeecCccc
Confidence            35566678888899888877766554 2    222232 233478999999994        445557889999986

>d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: PurM N-terminal domain-like
family: PurM N-terminal domain-like
domain: Hydrogenase expression/formation protein HypE
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=93.35  E-value=0.011  Score=43.78  Aligned_cols=57  Identities=14%  Similarity=0.134  Sum_probs=39.1

Q ss_pred             CEEEeeCCCCC---CHHHHHHHHHHh--ccccCCCCceeeeccccccCCCCcCCCcEEEeeeeeEEee
Q psy13615         64 PTKVSTYKHTL---ILSNSLQVMQKV--GAKYSDIAPFSQDGGETAELPGLYQPGDYDLAGFAVGAVE  126 (263)
Q Consensus        64 P~~~v~~~~~~---~~~~~~~i~~~l--~~~~~~~~~~~~~gge~~~l~~~~~~d~i~LAG~m~~~~~  126 (263)
                      |.+.+......   +.++.+++++++  .|++   +++.++||+|+++|+..+   ..+...+.|+++
T Consensus        50 P~~~~~~l~lp~~~~~~~l~~i~~gi~~~~~~---~~i~ivGGdT~~~~~~~~---~~is~t~iG~~~  111 (113)
T d2z1ea1          50 PIALANSMIIGEGLDMEVLKRVLKSMDETARE---VPVPIVTGDTKVVEDKIE---MFVITAGIGIAE  111 (113)
T ss_dssp             EEEEEEEEEEETTCCHHHHHHHHHHHHHHHHH---TTCCEEEEEEEEESSSCC---EEEEEEEEEEES
T ss_pred             HHHHhhheccCCCccHHHHHHHHHHHHHHHHH---cCcEEecCcceEecCCCc---eEEEEEEEEEec
Confidence            66655543321   347788888888  6677   999999999999988533   233445677665

>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.33  Score=40.40  Aligned_cols=87  Identities=15%  Similarity=0.174  Sum_probs=54.6

Q ss_pred             ccceeEEEecCcceeecCCccccccccCCCCCCCCCCeeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEee
Q psy13615        155 GFSLVLCFTDGKTVKVMPPSQDHKRKYNNDKGPNTGGMGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKR  234 (263)
Q Consensus       155 g~Sl~~ai~dg~~~~~~~~t~dhkr~~~~d~G~dTGgmga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~  234 (263)
                      ++++ ..+.||.++.+.++. .|    ....|..+|--....|.+.++++..++++ ++..++.+.     +.|.|..-+
T Consensus        85 Eiev-~~i~Dg~~~~i~~i~-e~----i~~~gvhsgds~~~~p~~~l~~~~~~~l~-~~a~kia~~-----l~~~G~~~v  152 (259)
T d1a9xa6          85 EVDV-DAICDGEMVLIGGIM-EH----IEQAGVHSGDSACSLPAYTLSQEIQDVMR-QQVQKLAFE-----LQVRGLMNV  152 (259)
T ss_dssp             EEEE-EEEECSSCEEEEEEE-EE----SSCTTSCGGGCCEEESCSSCCHHHHHHHH-HHHHHHHHH-----TTCCEEEEE
T ss_pred             EEEE-EEEEeCCcEEEEeee-ec----cccCcceeEeccccccCccCCHHHHHHHH-HHHHHHHHH-----hhhccceeE
Confidence            4554 377787766544443 35    34445666543334466667888877775 444444333     457899999


Q ss_pred             ccccccCCceeeecCcceeeeeCCCCC
Q psy13615        235 GFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       235 gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      .+...        ...+.++|+|+|+-
T Consensus       153 ef~v~--------~~~~y~iEvNpR~~  171 (259)
T d1a9xa6         153 QFAVK--------NNEVYLIEVNPRAA  171 (259)
T ss_dssp             EEEEC--------SSCEEEEEEECSCC
T ss_pred             EEEEE--------CCEEEEEEcccccC
Confidence            99843        34457999999985

>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.12  E-value=0.16  Score=40.36  Aligned_cols=58  Identities=19%  Similarity=0.145  Sum_probs=34.9

Q ss_pred             eeEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        192 MGAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       192 mga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      ....++-+..+++...++. ++..++++   ..|  |.|.....++.+..+       +..++|+|+|+|.
T Consensus       123 ~~~~~~~~~~~~e~~~~~~-~~~~~~~~---~lg--~~G~~~vef~~~~dg-------~~~~iEin~R~~~  180 (214)
T d1ulza3         123 LVEIAPSLILTPEKREYYG-NIVTKAAK---EIG--YYNAGTMEFIADQEG-------NLYFIEMNTRIQV  180 (214)
T ss_dssp             EEEEESCSSCCHHHHHHHH-HHHHHHHH---HTT--CCEEEEEEEEECTTC-------CEEEEEEECSCCT
T ss_pred             eeEEeecccccHHHHHHHH-HHHHHHHH---HcC--CccceEEEEEECCCC-------CEEEEEecCcCCC
Confidence            3344555556666666654 33333333   445  568888898844332       2468899999974

>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.13  E-value=0.36  Score=38.44  Aligned_cols=58  Identities=12%  Similarity=-0.225  Sum_probs=41.5

Q ss_pred             CcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        196 CPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       196 ~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      .|-...+.+..+++. .+..++++++...-..+.|...+.++.+..+.       ..++|+|+|+|
T Consensus       133 ~~~~~~~~~~~~~~~-e~~~~~~~~l~~~~~~~~G~~~ve~~~~~dg~-------~~viEiNpR~~  190 (235)
T d2r85a2         133 NIPIVLRESLLMDVI-EAGERVVKAAEELMGGLWGPFCLEGVFTPDLE-------FVVFEISARIV  190 (235)
T ss_dssp             EEECCCCGGGHHHHH-HHHHHHHHHHHHHSSCCCEEEEEEEEECTTSC-------EEEEEEECSCC
T ss_pred             ccCcccchhHHHHHH-HHHHHHHHHHHHhcCCceeeeeEEEEEcCCCC-------EEEEEEeCCCC
Confidence            344445666666664 56667778887777789999999999665432       35789999985

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=89.27  E-value=0.41  Score=36.70  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=59.9

Q ss_pred             CCccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHh
Q psy13615          9 QRKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKV   86 (263)
Q Consensus         9 ~~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l   86 (263)
                      +|+||++|+|..  |++...++++  .. +  .++|+++.+|+---.-.+.|+++.-...++....     ..+.+...+
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~--~~-d--~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~-----~~~~l~~~~   70 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIER--NL-D--RYQVIALTANRNVKDLADAAKRTNAKRAVIADPS-----LYNDLKEAL   70 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHH--TG-G--GEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGG-----GHHHHHHHT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHc--CC-C--CcEEEEEEeCCCHHHHHHHHHhhccccceeccHH-----HHHHHHHHh
Confidence            478999999877  9988888854  12 2  4799999998755556889999998877775322     222223333


Q ss_pred             ccccCCCCceeeeccccccCC-CCcCCCcEEEe
Q psy13615         87 GAKYSDIAPFSQDGGETAELP-GLYQPGDYDLA  118 (263)
Q Consensus        87 ~~~~~~~~~~~~~gge~~~l~-~~~~~d~i~LA  118 (263)
                        ..   ..+.+..|+.+... ...+.|.++.|
T Consensus        71 --~~---~~~~v~~g~~~l~~~~~~~~D~vv~A   98 (150)
T d1r0ka2          71 --AG---SSVEAAAGADALVEAAMMGADWTMAA   98 (150)
T ss_dssp             --TT---CSSEEEESHHHHHHHHTSCCSEEEEC
T ss_pred             --hh---cccccccCccchheecccccceeeee
Confidence              32   34555555544311 12456776655

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=88.25  E-value=0.76  Score=35.16  Aligned_cols=96  Identities=14%  Similarity=0.091  Sum_probs=59.1

Q ss_pred             CccEEEEEcCc--chhHHHHHHHhccccCCCCceEEEEEecCCCChhhHHHHHcCCCEEEeeCCCCCCHHHHHHHHHHhc
Q psy13615         10 RKRVAVLISGT--GTNLKSLLEATSNRSDIMRAEIVLVVSNKHNVEGLNIARNAGIPTKVSTYKHTLILSNSLQVMQKVG   87 (263)
Q Consensus        10 ~~riavl~SG~--Gsnl~al~~~~~~~~~~l~~~iv~Visn~~~a~gl~~A~~~gIP~~~v~~~~~~~~~~~~~i~~~l~   87 (263)
                      |+||++|.|..  |++...++++  .. +  .++|+++.+|+--..-.+.|+++.-...++...     +..+.+-+.+ 
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~--~~-d--~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~-----~~~~~l~~~l-   69 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRH--NP-E--HFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDE-----ASAKLLKTML-   69 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHH--CT-T--TEEEEEEEESSCHHHHHHHHHHHCCSEEEESSH-----HHHHHHHHHH-
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHh--CC-C--CcEEEEEEecCcHHHHHHHHHHHhhcccccccH-----HHHHHHHHHh-
Confidence            57899999977  8888888844  12 2  479999999876566688899999777776432     2222222333 


Q ss_pred             cccCCCCceeeecccccc--CCCCcCCCcEEEe
Q psy13615         88 AKYSDIAPFSQDGGETAE--LPGLYQPGDYDLA  118 (263)
Q Consensus        88 ~~~~~~~~~~~~gge~~~--l~~~~~~d~i~LA  118 (263)
                       .. ...++.+.-|+.+.  +-...++|.++.|
T Consensus        70 -~~-~~~~~~~~~g~~~l~~~~~~~~~D~vi~A  100 (151)
T d1q0qa2          70 -QQ-QGSRTEVLSGQQAACDMAALEDVDQVMAA  100 (151)
T ss_dssp             -HH-TTCCCEEEESHHHHHHHHTCTTCCEEEEC
T ss_pred             -hh-hccccccccChHHHHHHhcCCCCCEEEEe
Confidence             11 11445555454433  2233566776554

>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2
species: Escherichia coli [TaxId: 562]

Probab=87.93  E-value=0.48  Score=36.14  Aligned_cols=48  Identities=13%  Similarity=0.186  Sum_probs=34.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCCC
Q psy13615        201 LTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEGD  262 (263)
Q Consensus       201 ~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~gd  262 (263)
                      .+++..+++. ++...+++++     .+.|.+.+.++        +|..++.++|+|+|++.
T Consensus       120 ~~~~~~~~~~-~~~~~~~~~l-----~~~g~~~~~~~--------~~~~~~~v~Evn~Rp~~  167 (198)
T d3etja3         120 ANAQQQARAE-EMLSAIMQEL-----GYVGVMAMECF--------VTPQGLLINELAPRVHN  167 (198)
T ss_dssp             CCHHHHHHHH-HHHHHHHHHH-----TCCEEEEEEEE--------EETTEEEEEEEESSCCG
T ss_pred             cccchhhhhh-hhhhHHHHhh-----hhcccchhhee--------ecCCcEEEEEEECCccc
Confidence            4566655553 5555555554     46899999998        56667789999999863

>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Acetyl-CoA carboxylase, BC-M subdomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.00  E-value=1.5  Score=35.74  Aligned_cols=57  Identities=16%  Similarity=0.093  Sum_probs=34.7

Q ss_pred             eEECcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccccccCCceeeecCcceeeeeCCCCC
Q psy13615        193 GAYCPCDILTEAQKKEIHDTILMRVIKKMIAEGTPFVGEKKRGFTEGTVTAKVFSSRNRREKEDNPEEG  261 (263)
Q Consensus       193 ga~~pv~i~~~~~~~~i~~~il~~~i~~~~~eg~~~~G~L~~gl~~~~~~~~~~~~~~~~~~e~n~~~g  261 (263)
                      ..+.+.+..+++..+++. +.   +.+.++..+  +.|.....++.+..++++      .++|+|+|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~-~~---a~~~~~~lg--~~g~~~vd~~~~~~~g~~------yviEiNpR~~  202 (267)
T d1w96a3         146 IEEAPVTIAKAETFHEME-KA---AVRLGKLVG--YVSAGTVEYLYSHDDGKF------YFLELNPRLQ  202 (267)
T ss_dssp             EEEESCCSSCHHHHHHHH-HH---HHHHHHHHT--CCEEEEEEEEECTTTCCE------EEEEEECSCC
T ss_pred             cceeecccCchHHHHHHH-HH---HHHHHHHhC--CccccceeeeeeCCCCcE------EEEEeccccc
Confidence            345555556776666654 33   334443445  567777788855444433      5899999986