Psyllid ID: psy13629
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 395 | 2.2.26 [Sep-21-2011] | |||||||
| O88572 | 1613 | Low-density lipoprotein r | yes | N/A | 0.556 | 0.136 | 0.447 | 1e-50 | |
| O75581 | 1613 | Low-density lipoprotein r | yes | N/A | 0.526 | 0.128 | 0.458 | 3e-50 | |
| O75197 | 1615 | Low-density lipoprotein r | no | N/A | 0.473 | 0.115 | 0.481 | 2e-49 | |
| Q91VN0 | 1614 | Low-density lipoprotein r | no | N/A | 0.473 | 0.115 | 0.476 | 5e-49 | |
| O75096 | 1905 | Low-density lipoprotein r | no | N/A | 0.508 | 0.105 | 0.392 | 8e-41 | |
| Q9QYP1 | 1905 | Low-density lipoprotein r | no | N/A | 0.508 | 0.105 | 0.392 | 9e-41 | |
| Q8VI56 | 1905 | Low-density lipoprotein r | no | N/A | 0.508 | 0.105 | 0.392 | 1e-40 | |
| Q9FJX0 | 595 | Peptidyl-prolyl cis-trans | yes | N/A | 0.255 | 0.169 | 0.673 | 1e-37 | |
| P52012 | 523 | Peptidyl-prolyl cis-trans | yes | N/A | 0.258 | 0.195 | 0.666 | 5e-37 | |
| Q9D787 | 521 | Peptidyl-prolyl cis-trans | no | N/A | 0.291 | 0.220 | 0.686 | 3e-34 |
| >sp|O88572|LRP6_MOUSE Low-density lipoprotein receptor-related protein 6 OS=Mus musculus GN=Lrp6 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 140/230 (60%), Gaps = 10/230 (4%)
Query: 95 CSFEKLQPDGAYLL-----DIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDH 148
CSF L LL D+R+ + + + TI+ LE+ AA+D+ + ++ W+D
Sbjct: 11 CSFCVLLRAAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFGHGLIYWSDV 70
Query: 149 GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208
E I F N S NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG
Sbjct: 71 SEEAIKRTEF--NKSESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 128
Query: 209 RKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268
RKVL+W+++DQPRAIAL P M+WTDWGEVPKIER M+G R VI+++ I+WPNG
Sbjct: 129 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF--VIINTEIYWPNG 186
Query: 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINLELYCNVFPKT 318
+ +D+ R LYW D +L FI + DG R G + +F T
Sbjct: 187 LTLDYQERKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDT 236
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation. Mus musculus (taxid: 10090) |
| >sp|O75581|LRP6_HUMAN Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 137/218 (62%), Gaps = 10/218 (4%)
Query: 95 CSFEKLQPDGAYLL-----DIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDH 148
CSF L LL D+R+ + + + TI+ LE+ AA+D+ + ++ W+D
Sbjct: 11 CSFCVLLRAAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV 70
Query: 149 GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208
E I F N S NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG
Sbjct: 71 SEEAIKRTEF--NKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 128
Query: 209 RKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268
RKVL+W+++DQPRAIAL P M+WTDWGEVPKIER M+G R +I++S I+WPNG
Sbjct: 129 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF--IIINSEIYWPNG 186
Query: 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHI 306
+ +D+ + LYW D +L FI + DG R G +
Sbjct: 187 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSL 224
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation. Homo sapiens (taxid: 9606) |
| >sp|O75197|LRP5_HUMAN Low-density lipoprotein receptor-related protein 5 OS=Homo sapiens GN=LRP5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/191 (48%), Positives = 128/191 (67%), Gaps = 4/191 (2%)
Query: 109 DIRIANLSR-PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + L+ ++ LE+ AA+D+ + K V WTD E I T+ +
Sbjct: 42 DVRLVDAGGVKLESTIVVSGLEDAAAVDFQFSKGAVYWTDVSEEAIKQ-TYLNQTGAAVQ 100
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DW+ +KLYWTDSETN++EV++L+G RKVL+W+D+DQPRAIAL P
Sbjct: 101 NVVISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDP 160
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGE P+IER M+G RK+IVDS I+WPNG+ ID + LYW D +L+F
Sbjct: 161 AHGYMYWTDWGETPRIERAGMDGST--RKIIVDSDIYWPNGLTIDLEEQKLYWADAKLSF 218
Query: 288 IEVMDYDGYVR 298
I + DG R
Sbjct: 219 IHRANLDGSFR 229
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation. Homo sapiens (taxid: 9606) |
| >sp|Q91VN0|LRP5_MOUSE Low-density lipoprotein receptor-related protein 5 OS=Mus musculus GN=Lrp5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 195 bits (495), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 91/191 (47%), Positives = 127/191 (66%), Gaps = 4/191 (2%)
Query: 109 DIRIANLSR-PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + L+ + LE+ AA+D+ + K V WTD E I T+ +
Sbjct: 41 DVRLVDAGGVKLESTIVASGLEDAAAVDFQFSKGAVYWTDVSEEAIKQ-TYLNQTGAAAQ 99
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
N++ +GL++PDGLA DW+ +KLYWTDSETN++EV++L+G RKVL+W+D+DQPRAIAL P
Sbjct: 100 NIVISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDP 159
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGE P+IER M+G RK+IVDS I+WPNG+ ID + LYW D +L+F
Sbjct: 160 AHGYMYWTDWGEAPRIERAGMDGST--RKIIVDSDIYWPNGLTIDLEEQKLYWADAKLSF 217
Query: 288 IEVMDYDGYVR 298
I + DG R
Sbjct: 218 IHRANLDGSFR 228
|
Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin (By similarity). Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation. Mus musculus (taxid: 10090) |
| >sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 168 bits (425), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 132/209 (63%), Gaps = 8/209 (3%)
Query: 93 ERCSFEKLQPDGAYLLDIRI---ANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG 149
+R S + L P+ L RI L + ++ +LE A+D+++++ +V W+D
Sbjct: 429 DRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT 488
Query: 150 TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 209
+ I +G+NV V++ GL +P GLA+DW+ +KLYWTDS T+++EV++LDG R
Sbjct: 489 LDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 545
Query: 210 KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGI 269
KVL W+++++PRAIAL P + ++WTDWG P+IE +M+G R++I D+ +FWPNG+
Sbjct: 546 KVLLWQNLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--GRRIIADTHLFWPNGL 603
Query: 270 AIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298
ID+ R +YW+D + IE + DG R
Sbjct: 604 TIDYAGRRMYWVDAKHHVIERANLDGSHR 632
|
Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Homo sapiens (taxid: 9606) |
| >sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 167 bits (424), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 131/209 (62%), Gaps = 8/209 (3%)
Query: 93 ERCSFEKLQPDGAYLLDIRI---ANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG 149
+R S + L P+ L RI L + ++ +LE A+D+++++ +V W+D
Sbjct: 429 DRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT 488
Query: 150 TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 209
+ I +G+NV V++ GL +P GLA+DW+ +KLYWTDS T+++EV++LDG R
Sbjct: 489 LDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 545
Query: 210 KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGI 269
KVL W+ +++PRAIAL P + ++WTDWG P+IE +M+G R++I D+ +FWPNG+
Sbjct: 546 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGL 603
Query: 270 AIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298
ID+ R +YW+D + IE + DG R
Sbjct: 604 TIDYAGRRMYWVDAKHHVIERANLDGSHR 632
|
Mediates SOST-dependent inhibition of bone formation (By similarity). Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling (By similarity). Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Rattus norvegicus (taxid: 10116) |
| >sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 131/209 (62%), Gaps = 8/209 (3%)
Query: 93 ERCSFEKLQPDGAYLLDIRI---ANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG 149
+R S + L P+ L RI L + ++ +LE A+D+++++ +V W+D
Sbjct: 429 DRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT 488
Query: 150 TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 209
+ I +G+NV V++ GL +P GLA+DW+ +KLYWTDS T+++EV++LDG R
Sbjct: 489 LDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 545
Query: 210 KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGI 269
KVL W+ +++PRAIAL P + ++WTDWG P+IE +M+G R++I D+ +FWPNG+
Sbjct: 546 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGL 603
Query: 270 AIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298
ID+ R +YW+D + IE + DG R
Sbjct: 604 TIDYAGRRMYWVDAKHHVIERANLDGSHR 632
|
Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes. Mus musculus (taxid: 10090) |
| >sp|Q9FJX0|PPIL2_ARATH Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arabidopsis thaliana GN=PUB49 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/101 (67%), Positives = 81/101 (80%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
GYV+ T+ G +N+EL+C++ P+ CENF+ CE GYYNG FHRSIRNFMIQGGDPTGTG
Sbjct: 344 GYVQFQTTHGDLNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTG 403
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
GGESIWGKPF+DE H+GRGV+SMANSGP+TN SQ
Sbjct: 404 KGGESIWGKPFKDEPNSKLLHSGRGVVSMANSGPHTNGSQF 444
|
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 2 EC: . EC: 1 EC: . EC: 8 |
| >sp|P52012|CYP4_CAEEL Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 155 bits (392), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 78/102 (76%)
Query: 294 DGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGT 353
+ +VRLVT+ G +NLEL+ PK CENF+ HC NGYYN TKFHR I+NFM+QGGDPTGT
Sbjct: 279 NAFVRLVTNFGPLNLELFAPKVPKACENFITHCSNGYYNNTKFHRLIKNFMLQGGDPTGT 338
Query: 354 GTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
G GGESIW KPF DEF ++H RGVLSMAN G NTN SQ
Sbjct: 339 GHGGESIWDKPFSDEFISGFSHDARGVLSMANKGSNTNGSQF 380
|
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Influences the hermaphrodite switch from spermatogenesis to oogenesis. Required for body-wall muscle cell development. Caenorhabditis elegans (taxid: 6239) EC: 5 EC: . EC: 2 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q9D787|PPIL2_MOUSE Peptidyl-prolyl cis-trans isomerase-like 2 OS=Mus musculus GN=Ppil2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/115 (68%), Positives = 94/115 (81%)
Query: 281 IDGRLTFIEVMDYDGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSI 340
ID + + + GYVRL T+ G +NLEL+C++ PKTCENF+K C+ YY+GT FHRSI
Sbjct: 266 IDEDVLRYQFVKKKGYVRLHTNKGDLNLELHCDLTPKTCENFIKLCKKQYYDGTIFHRSI 325
Query: 341 RNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
RNF+IQGGDPTGTGTGGES WGKPF+DEF+PN +HTGRGVLSMANSGPNTN SQ
Sbjct: 326 RNFVIQGGDPTGTGTGGESFWGKPFKDEFRPNLSHTGRGVLSMANSGPNTNKSQF 380
|
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Mus musculus (taxid: 10090) EC: 5 EC: . EC: 2 EC: . EC: 1 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 395 | ||||||
| 328703795 | 1664 | PREDICTED: LOW QUALITY PROTEIN: low-dens | 0.465 | 0.110 | 0.626 | 1e-70 | |
| 340727334 | 1606 | PREDICTED: low-density lipoprotein recep | 0.458 | 0.112 | 0.615 | 1e-66 | |
| 350422992 | 1606 | PREDICTED: low-density lipoprotein recep | 0.458 | 0.112 | 0.615 | 5e-66 | |
| 328790587 | 1596 | PREDICTED: low-density lipoprotein recep | 0.458 | 0.113 | 0.610 | 7e-66 | |
| 383857988 | 1606 | PREDICTED: low-density lipoprotein recep | 0.458 | 0.112 | 0.621 | 7e-66 | |
| 380023251 | 1606 | PREDICTED: LOW QUALITY PROTEIN: low-dens | 0.458 | 0.112 | 0.610 | 1e-65 | |
| 332017479 | 1615 | Low-density lipoprotein receptor-related | 0.450 | 0.110 | 0.582 | 2e-64 | |
| 307212491 | 1680 | Low-density lipoprotein receptor-related | 0.496 | 0.116 | 0.558 | 2e-62 | |
| 307186181 | 1662 | Low-density lipoprotein receptor-related | 0.458 | 0.108 | 0.568 | 3e-61 | |
| 345487462 | 1638 | PREDICTED: low-density lipoprotein recep | 0.481 | 0.115 | 0.570 | 9e-61 |
| >gi|328703795|ref|XP_001950234.2| PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 5-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 119/190 (62%), Positives = 152/190 (80%)
Query: 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 168
DIR+AN+S+ + I+KDL EG+A+D+YYK S++CW DHG E I C +++G + +K
Sbjct: 123 DIRMANMSKSTRINVIVKDLIEGSALDFYYKGSLICWADHGQESIQCVSYNGTHASNKVA 182
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++ G+ITPDGLA DWLT+K+YWTD +TN++EV+SLDGK RKVLYWEDIDQPRA+ALVP
Sbjct: 183 ILNTGIITPDGLACDWLTKKIYWTDGDTNRIEVASLDGKYRKVLYWEDIDQPRAVALVPM 242
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFI 288
D IMFWTDWGEVPKIER MNGD RKVIV IFWPNG+ IDF+ + +YW+DG+L FI
Sbjct: 243 DGIMFWTDWGEVPKIERAGMNGDLSTRKVIVSDNIFWPNGLTIDFHTKHIYWVDGKLGFI 302
Query: 289 EVMDYDGYVR 298
++MDYDG R
Sbjct: 303 DIMDYDGRNR 312
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340727334|ref|XP_003402001.1| PREDICTED: low-density lipoprotein receptor-related protein 6-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 117/190 (61%), Positives = 146/190 (76%)
Query: 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 168
DIR+AN SR K TIIKDL EGAA+D+Y+++ +VCW+D G E+I C +G + G K
Sbjct: 34 DIRMANASRTNKVTTIIKDLSEGAALDFYFERELVCWSDSGLEIIQCIQTNGTHTGEKTI 93
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
V+ + LI+PDGLA DW T KLYWTD E N++EV+S+DG+ RKVL+W DI QPRAIALVP
Sbjct: 94 VVNSSLISPDGLACDWYTGKLYWTDGEKNRIEVTSIDGRHRKVLFWTDIYQPRAIALVPM 153
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFI 288
SI+FWTDWG+VPKIER AMNGDP R+VI+ IFWPNG+ +D+ N L+YW+DGRL FI
Sbjct: 154 KSILFWTDWGDVPKIERAAMNGDPSTREVIISDDIFWPNGLTVDYENELIYWVDGRLKFI 213
Query: 289 EVMDYDGYVR 298
VMDY G R
Sbjct: 214 AVMDYYGKNR 223
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350422992|ref|XP_003493352.1| PREDICTED: low-density lipoprotein receptor-related protein 6-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 117/190 (61%), Positives = 145/190 (76%)
Query: 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 168
DIR+AN SR K TIIKDL EGAA+D+Y++ +VCW+D G E+I C +G + G K
Sbjct: 34 DIRMANASRTNKVTTIIKDLSEGAALDFYFEHELVCWSDSGLEIIQCIQTNGTHTGEKTI 93
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
V+ + LI+PDGLA DW T KLYWTD E N++EVSS+DG+ RKVL+W +I QPRAIALVP
Sbjct: 94 VVNSSLISPDGLACDWYTGKLYWTDGEKNRIEVSSIDGRHRKVLFWTEIYQPRAIALVPM 153
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFI 288
SI+FWTDWG+VPKIER AMNGDP R+VI+ IFWPNG+ +D+ N L+YW+DGRL FI
Sbjct: 154 KSILFWTDWGDVPKIERAAMNGDPSTREVIISDDIFWPNGLTVDYENELVYWVDGRLKFI 213
Query: 289 EVMDYDGYVR 298
VMDY G R
Sbjct: 214 AVMDYYGKNR 223
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328790587|ref|XP_623419.2| PREDICTED: low-density lipoprotein receptor-related protein 6-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 116/190 (61%), Positives = 145/190 (76%)
Query: 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 168
DIR+AN SR K T+IKDL EGAA+D+Y++ +VCW+D G E+I C +G + G K
Sbjct: 34 DIRMANASRTNKVTTVIKDLSEGAALDFYFEHELVCWSDSGLEIIQCIRTNGTHTGEKTI 93
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
V+ + LI+PDGLA DW T KLYWTD E N++EV+S+DG+ RKVL+W DI QPRAIALVP
Sbjct: 94 VVNSSLISPDGLACDWYTGKLYWTDGEKNRIEVTSIDGRHRKVLFWTDIYQPRAIALVPM 153
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFI 288
SI+FWTDWG+VPKIER AMNGDP R+VI+ IFWPNG+ +D+ N L+YW+DGRL FI
Sbjct: 154 KSILFWTDWGDVPKIERAAMNGDPSTREVIISDDIFWPNGLTVDYENELVYWVDGRLKFI 213
Query: 289 EVMDYDGYVR 298
VMDY G R
Sbjct: 214 AVMDYYGKNR 223
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383857988|ref|XP_003704485.1| PREDICTED: low-density lipoprotein receptor-related protein 6 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 118/190 (62%), Positives = 145/190 (76%)
Query: 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 168
DIR+AN SR K TI+KDL EGAAID+Y++ +VCW+D G E+I C +G ++G +
Sbjct: 34 DIRMANASRTNKVTTIVKDLSEGAAIDFYFEHELVCWSDSGLEIIQCVQTNGTHMGERTI 93
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
V+ + LI+PDGLA DW T KLYWTD E N++EV+S+DG RKVL+W DI QPRAIALVP
Sbjct: 94 VVNSSLISPDGLACDWYTGKLYWTDGEKNRIEVTSIDGHYRKVLFWTDIYQPRAIALVPM 153
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFI 288
SI+FWTDWG+VPKIER AMNGDP R+VIV IFWPNG+ ID+ N L+YW+DGRL FI
Sbjct: 154 KSILFWTDWGDVPKIERAAMNGDPSTREVIVSDDIFWPNGLTIDYGNELVYWVDGRLKFI 213
Query: 289 EVMDYDGYVR 298
VMDY G R
Sbjct: 214 SVMDYYGKNR 223
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380023251|ref|XP_003695438.1| PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 6-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 116/190 (61%), Positives = 144/190 (75%)
Query: 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 168
DIR+AN SR K T+IKDL EGAA+D+Y++ +VCW+D G E+I C +G + G K
Sbjct: 34 DIRMANASRTNKVTTVIKDLSEGAALDFYFEHELVCWSDSGLEIIQCIRTNGTHTGEKTI 93
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
V+ + LI+PDGLA DW T KLYWTD E N++EV+S+DG RKVL+W DI QPRAIALVP
Sbjct: 94 VVNSSLISPDGLACDWYTGKLYWTDGEKNRIEVTSIDGHHRKVLFWTDIYQPRAIALVPM 153
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFI 288
SI+FWTDWG+VPKIER AMNGDP R+VI+ IFWPNG+ +D+ N L+YW+DGRL FI
Sbjct: 154 KSILFWTDWGDVPKIERAAMNGDPSTREVIISDDIFWPNGLTVDYENELVYWVDGRLKFI 213
Query: 289 EVMDYDGYVR 298
VMDY G R
Sbjct: 214 AVMDYYGKNR 223
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332017479|gb|EGI58202.1| Low-density lipoprotein receptor-related protein 6 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 109/187 (58%), Positives = 143/187 (76%)
Query: 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 168
DIR+ N+SR K IIKDL EGA++D++Y++ ++CW+D EMI C ++G + G K
Sbjct: 14 DIRVTNISRSNKVNIIIKDLSEGASLDFFYERELICWSDSNLEMIQCIHYNGTHTGEKIT 73
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
V+ + LI+PDGLA DW T+KLYWTD E N++EV+S+DG+ RKVL+W DI QPRAIAL P
Sbjct: 74 VVNSSLISPDGLACDWFTDKLYWTDGEKNRIEVTSIDGRNRKVLFWNDIYQPRAIALAPM 133
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFI 288
+ +FWTDWG+VPKIER +M+GDP R++IV IFWPNG+ ID+ NRL+YW DGRL FI
Sbjct: 134 EGYLFWTDWGDVPKIERASMDGDPNTREIIVSDDIFWPNGLTIDYENRLVYWADGRLHFI 193
Query: 289 EVMDYDG 295
VMDY G
Sbjct: 194 AVMDYHG 200
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307212491|gb|EFN88222.1| Low-density lipoprotein receptor-related protein 6 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 110/197 (55%), Positives = 144/197 (73%), Gaps = 1/197 (0%)
Query: 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 168
DIR+ N+SR K I+KDL EGAA+D+YY++ ++CW+D G EMI C +G + G +
Sbjct: 105 DIRMTNVSRSNKVNVIVKDLSEGAALDFYYERGLICWSDSGLEMIQCIRANGTHTGERMT 164
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
V+ + LI+PDGLA DW T KLYWTD E N++E++S+DG+ RKVL+W DI QPRAIAL P
Sbjct: 165 VVNSSLISPDGLACDWYTGKLYWTDGEKNRIELTSIDGRHRKVLFWTDIYQPRAIALAPM 224
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFI 288
S +FWTDWG+VPKIER +M+GDP R VIV IFWPNG+ +D+ N L+YW DGRL FI
Sbjct: 225 KSFLFWTDWGDVPKIERASMDGDPSTRIVIVSDNIFWPNGLTVDYENELIYWADGRLWFI 284
Query: 289 EVMD-YDGYVRLVTSLG 304
V+D Y G R + + G
Sbjct: 285 AVIDFYGGNRRTIVNRG 301
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307186181|gb|EFN71887.1| Low-density lipoprotein receptor-related protein 6 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 108/190 (56%), Positives = 140/190 (73%)
Query: 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 168
D+R+AN+SR K IIK+L EGAA+D+YY++ ++CW+D G EMI C +G +
Sbjct: 37 DLRMANVSRNNKVNIIIKELSEGAALDFYYERGLICWSDSGLEMIQCAHSNGTYTSERMT 96
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
V+ + LI+PDGLA DW T KLYWTD E N +EV+S+DG+ RKVL+W DI QPRAIAL P
Sbjct: 97 VVNSRLISPDGLACDWYTGKLYWTDGEKNLIEVTSIDGRHRKVLFWTDIYQPRAIALAPM 156
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFI 288
++FWTDWG++PKIER +M+GDP R+VIV IFWPNG+ ID+ + L+YW DGRL FI
Sbjct: 157 KGLLFWTDWGDIPKIERASMDGDPSTREVIVSENIFWPNGLTIDYQHELIYWADGRLWFI 216
Query: 289 EVMDYDGYVR 298
VMDY G R
Sbjct: 217 AVMDYHGRNR 226
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345487462|ref|XP_001603043.2| PREDICTED: low-density lipoprotein receptor-related protein 6-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 109/191 (57%), Positives = 143/191 (74%), Gaps = 1/191 (0%)
Query: 109 DIRIANLSRPLKPV-TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
DIR+AN+SR K V TI+K+L EG +D+YY++++VCW+++ E I C +G+
Sbjct: 36 DIRVANVSRANKLVGTIVKELPEGTTLDFYYERNLVCWSNNAIETIQCVRSNGSYTHEPI 95
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
V+ + LI+PDGLA DW T KLYWTD E N++EV+S++G RKVL+W +I QPRAIALVP
Sbjct: 96 TVVNSSLISPDGLACDWYTGKLYWTDGEKNRIEVTSIEGSIRKVLFWTEIYQPRAIALVP 155
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
Q SI FWTDWGE+PKIER AMNGDP R V+V IFWPNG+ +D++N L+YW+DGR F
Sbjct: 156 QASIFFWTDWGELPKIERAAMNGDPSTRSVLVSEDIFWPNGLTVDYDNELVYWVDGRYKF 215
Query: 288 IEVMDYDGYVR 298
I VMDY+G R
Sbjct: 216 IAVMDYNGRNR 226
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 395 | ||||||
| FB|FBgn0000119 | 1678 | arr "arrow" [Drosophila melano | 0.513 | 0.120 | 0.485 | 1e-53 | |
| UNIPROTKB|E9PHY1 | 471 | LRP5 "Low-density lipoprotein | 0.473 | 0.397 | 0.481 | 1.4e-48 | |
| UNIPROTKB|F1NWV6 | 1607 | LRP6 "Uncharacterized protein" | 0.491 | 0.120 | 0.482 | 2e-48 | |
| RGD|1304749 | 1595 | Lrp6 "low density lipoprotein | 0.521 | 0.129 | 0.459 | 5.3e-48 | |
| UNIPROTKB|F5H7J9 | 1568 | LRP6 "Low-density lipoprotein | 0.491 | 0.123 | 0.472 | 6.6e-48 | |
| UNIPROTKB|F1MDE1 | 1604 | LRP6 "Uncharacterized protein" | 0.473 | 0.116 | 0.489 | 6.8e-48 | |
| UNIPROTKB|O75581 | 1613 | LRP6 "Low-density lipoprotein | 0.491 | 0.120 | 0.472 | 6.9e-48 | |
| MGI|MGI:1298218 | 1613 | Lrp6 "low density lipoprotein | 0.521 | 0.127 | 0.459 | 8.8e-48 | |
| UNIPROTKB|F1PCS0 | 1613 | LRP6 "Uncharacterized protein" | 0.556 | 0.136 | 0.443 | 1.1e-47 | |
| UNIPROTKB|O75197 | 1615 | LRP5 "Low-density lipoprotein | 0.473 | 0.115 | 0.481 | 3.9e-47 |
| FB|FBgn0000119 arr "arrow" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 1.0e-53, P = 1.0e-53
Identities = 104/214 (48%), Positives = 147/214 (68%)
Query: 109 DIRIANLSRPLK-PV--TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-- 163
DI++AN++RP P I++DL E AID+YY K++VCWTD G E+I C + + +
Sbjct: 96 DIQVANITRPTGGPQIDVIVRDLAEAMAIDFYYAKNLVCWTDSGREIIECAQTNSSALQP 155
Query: 164 ---GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQP 220
K VI+ GL P+GLA+DW T+K+YWTD E N++EV++LDG+ +KVL+W D+DQP
Sbjct: 156 LLRAPKQTVISTGLDKPEGLAMDWYTDKIYWTDGEKNRIEVATLDGRYQKVLFWTDLDQP 215
Query: 221 RAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYW 280
RA+A+VP ++ WTDWGE PKIER +M+GDP R +V +FWPNG+A+D N L+YW
Sbjct: 216 RAVAVVPARKLLIWTDWGEYPKIERASMDGDPLSRMTLVKEHVFWPNGLAVDLKNELIYW 275
Query: 281 IDGRLTFIEVMDYDGYVR--LVTSLGH-INLELY 311
DG+ FI+VM DG R +V +L + +L Y
Sbjct: 276 TDGKHHFIDVMRLDGSSRRTIVNNLKYPFSLTFY 309
|
|
| UNIPROTKB|E9PHY1 LRP5 "Low-density lipoprotein receptor-related protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 92/191 (48%), Positives = 128/191 (67%)
Query: 109 DIRIANLSR-PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + L+ ++ LE+ AA+D+ + K V WTD E I T+ +
Sbjct: 42 DVRLVDAGGVKLESTIVVSGLEDAAAVDFQFSKGAVYWTDVSEEAIKQ-TYLNQTGAAVQ 100
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DW+ +KLYWTDSETN++EV++L+G RKVL+W+D+DQPRAIAL P
Sbjct: 101 NVVISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDP 160
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGE P+IER M+G R K+IVDS I+WPNG+ ID + LYW D +L+F
Sbjct: 161 AHGYMYWTDWGETPRIERAGMDGSTR--KIIVDSDIYWPNGLTIDLEEQKLYWADAKLSF 218
Query: 288 IEVMDYDGYVR 298
I + DG R
Sbjct: 219 IHRANLDGSFR 229
|
|
| UNIPROTKB|F1NWV6 LRP6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 2.0e-48, P = 2.0e-48
Identities = 96/199 (48%), Positives = 133/199 (66%)
Query: 109 DIRIANLSRPLKPVTIIKD-LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + + + T+I LE+ AA+D+ + K ++ W+D E I F N GS
Sbjct: 16 DLRLVDAANGKENATVIVGGLEDAAAVDFVFVKGLIYWSDVSEEAIKRTEF--NKSGSVQ 73
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++DQPRAIAL P
Sbjct: 74 NVVISGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 133
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGEVPKIER M+G R +IV++ I+WPNG+ +D+ + LYW D +L F
Sbjct: 134 ARGFMYWTDWGEVPKIERAGMDGSSR--SIIVNTDIYWPNGLTLDYEEQKLYWADAKLNF 191
Query: 288 IEVMDYDGYVRLVTSLGHI 306
I + DG R G +
Sbjct: 192 IHKSNLDGSHRQAVVKGSL 210
|
|
| RGD|1304749 Lrp6 "low density lipoprotein receptor-related protein 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 5.3e-48, P = 5.3e-48
Identities = 97/211 (45%), Positives = 134/211 (63%)
Query: 109 DIRIANLSRPLKPVTIIKD-LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F N S
Sbjct: 12 DLRLVDATNGKENATIVVGGLEDAAAVDFVFGHGLIYWSDVSEEAIKRTEF--NKTESVQ 69
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++DQPRAIAL P
Sbjct: 70 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 129
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGEVPKIER M+G R VI+++ I+WPNG+ +D+ R LYW D +L F
Sbjct: 130 SSGFMYWTDWGEVPKIERAGMDGSSRF--VIINTEIYWPNGLTLDYEERKLYWADAKLNF 187
Query: 288 IEVMDYDGYVRLVTSLGHINLELYCNVFPKT 318
I + DG R G + +F T
Sbjct: 188 IHKSNLDGTNRQAVVKGSLPHPFALTLFEDT 218
|
|
| UNIPROTKB|F5H7J9 LRP6 "Low-density lipoprotein receptor-related protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 6.6e-48, P = 6.6e-48
Identities = 94/199 (47%), Positives = 131/199 (65%)
Query: 109 DIRIANLSRPLKPVTIIKD-LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F N S
Sbjct: 30 DLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF--NKTESVQ 87
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++DQPRAIAL P
Sbjct: 88 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 147
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGEVPKIER M+G R +I++S I+WPNG+ +D+ + LYW D +L F
Sbjct: 148 SSGFMYWTDWGEVPKIERAGMDGSSRF--IIINSEIYWPNGLTLDYEEQKLYWADAKLNF 205
Query: 288 IEVMDYDGYVRLVTSLGHI 306
I + DG R G +
Sbjct: 206 IHKSNLDGTNRQAVVKGSL 224
|
|
| UNIPROTKB|F1MDE1 LRP6 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 6.8e-48, P = 6.8e-48
Identities = 94/192 (48%), Positives = 130/192 (67%)
Query: 109 DIRIANLSRPLKPVTIIKD-LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F N S
Sbjct: 18 DLRLVDAANGKENATIVVGGLEDAAALDFVFSHGLIYWSDVSEEAIKRIEF--NKTESVQ 75
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++DQPRAIAL P
Sbjct: 76 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 135
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGEVPKIER M+G R VI+++ I+WPNG+ +D+ R LYW D +L F
Sbjct: 136 SSGFMYWTDWGEVPKIERAGMDGSDRF--VIINTEIYWPNGLTLDYEERKLYWADAKLNF 193
Query: 288 IEVMDYDGYVRL 299
I + DG R+
Sbjct: 194 IHRSNLDGTNRV 205
|
|
| UNIPROTKB|O75581 LRP6 "Low-density lipoprotein receptor-related protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 6.9e-48, P = 6.9e-48
Identities = 94/199 (47%), Positives = 131/199 (65%)
Query: 109 DIRIANLSRPLKPVTIIKD-LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F N S
Sbjct: 30 DLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF--NKTESVQ 87
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++DQPRAIAL P
Sbjct: 88 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 147
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGEVPKIER M+G R +I++S I+WPNG+ +D+ + LYW D +L F
Sbjct: 148 SSGFMYWTDWGEVPKIERAGMDGSSRF--IIINSEIYWPNGLTLDYEEQKLYWADAKLNF 205
Query: 288 IEVMDYDGYVRLVTSLGHI 306
I + DG R G +
Sbjct: 206 IHKSNLDGTNRQAVVKGSL 224
|
|
| MGI|MGI:1298218 Lrp6 "low density lipoprotein receptor-related protein 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 8.8e-48, P = 8.8e-48
Identities = 97/211 (45%), Positives = 134/211 (63%)
Query: 109 DIRIANLSRPLKPVTIIKD-LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F N S
Sbjct: 30 DLRLVDATNGKENATIVVGGLEDAAAVDFVFGHGLIYWSDVSEEAIKRTEF--NKSESVQ 87
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++DQPRAIAL P
Sbjct: 88 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 147
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGEVPKIER M+G R VI+++ I+WPNG+ +D+ R LYW D +L F
Sbjct: 148 SSGFMYWTDWGEVPKIERAGMDGSSRF--VIINTEIYWPNGLTLDYQERKLYWADAKLNF 205
Query: 288 IEVMDYDGYVRLVTSLGHINLELYCNVFPKT 318
I + DG R G + +F T
Sbjct: 206 IHKSNLDGTNRQAVVKGSLPHPFALTLFEDT 236
|
|
| UNIPROTKB|F1PCS0 LRP6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 512 (185.3 bits), Expect = 1.1e-47, P = 1.1e-47
Identities = 102/230 (44%), Positives = 140/230 (60%)
Query: 95 CSFEKLQPDGAYLL-----DIRIANLSRPLKPVTIIKD-LEEGAAIDYYYKKSMVCWTDH 148
CSF L LL D+R+ + + + TI+ LE+ AA+D+ + ++ W+D
Sbjct: 11 CSFCALLRAAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFGHGLIYWSDV 70
Query: 149 GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208
E I F N S NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG
Sbjct: 71 SEEAIKRTEF--NKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 128
Query: 209 RKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268
RKVL+W+++DQPRAIAL P M+WTDWGEVPKIER M+G R VI+++ I+WPNG
Sbjct: 129 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF--VIINTEIYWPNG 186
Query: 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINLELYCNVFPKT 318
+ +D+ + LYW D +L FI + DG R G + +F T
Sbjct: 187 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDT 236
|
|
| UNIPROTKB|O75197 LRP5 "Low-density lipoprotein receptor-related protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 507 (183.5 bits), Expect = 3.9e-47, P = 3.9e-47
Identities = 92/191 (48%), Positives = 128/191 (67%)
Query: 109 DIRIANLSR-PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + L+ ++ LE+ AA+D+ + K V WTD E I T+ +
Sbjct: 42 DVRLVDAGGVKLESTIVVSGLEDAAAVDFQFSKGAVYWTDVSEEAIKQ-TYLNQTGAAVQ 100
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DW+ +KLYWTDSETN++EV++L+G RKVL+W+D+DQPRAIAL P
Sbjct: 101 NVVISGLVSPDGLACDWVGKKLYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDP 160
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGE P+IER M+G R K+IVDS I+WPNG+ ID + LYW D +L+F
Sbjct: 161 AHGYMYWTDWGETPRIERAGMDGSTR--KIIVDSDIYWPNGLTIDLEEQKLYWADAKLSF 218
Query: 288 IEVMDYDGYVR 298
I + DG R
Sbjct: 219 IHRANLDGSFR 229
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0CP84 | PPIL1_CRYNJ | 5, ., 2, ., 1, ., 8 | 0.61 | 0.2531 | 0.5747 | yes | N/A |
| P0CP86 | PPIL3_CRYNJ | 5, ., 2, ., 1, ., 8 | 0.5757 | 0.2506 | 0.5928 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.2.1 | 0.691 |
| 4th Layer | 5.2.1.8 | 0.737 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 395 | |||
| cd01923 | 159 | cd01923, cyclophilin_RING, cyclophilin_RING: cyclo | 2e-67 | |
| cd01928 | 153 | cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3 | 2e-50 | |
| cd01927 | 148 | cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo | 3e-48 | |
| cd01922 | 146 | cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY | 7e-45 | |
| cd00317 | 146 | cd00317, cyclophilin, cyclophilin: cyclophilin-typ | 7e-44 | |
| cd01925 | 171 | cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC | 2e-41 | |
| pfam00160 | 144 | pfam00160, Pro_isomerase, Cyclophilin type peptidy | 3e-41 | |
| COG0652 | 158 | COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase | 4e-41 | |
| cd01926 | 164 | cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik | 3e-36 | |
| PTZ00060 | 183 | PTZ00060, PTZ00060, cyclophilin; Provisional | 1e-29 | |
| PLN03149 | 186 | PLN03149, PLN03149, peptidyl-prolyl isomerase H (c | 5e-28 | |
| cd01921 | 166 | cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph | 4e-26 | |
| cd01920 | 155 | cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP | 5e-17 | |
| PRK10903 | 190 | PRK10903, PRK10903, peptidyl-prolyl cis-trans isom | 2e-14 | |
| PRK10791 | 164 | PRK10791, PRK10791, peptidyl-prolyl cis-trans isom | 7e-11 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 4e-10 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 1e-08 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 9e-08 | |
| cd01924 | 176 | cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40 | 3e-07 | |
| smart00135 | 43 | smart00135, LY, Low-density lipoprotein-receptor Y | 2e-05 | |
| pfam00058 | 42 | pfam00058, Ldl_recept_b, Low-density lipoprotein r | 2e-05 | |
| PTZ00221 | 249 | PTZ00221, PTZ00221, cyclophilin; Provisional | 0.001 |
| >gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 2e-67
Identities = 77/99 (77%), Positives = 86/99 (86%)
Query: 296 YVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGT 355
YVRL T+ G +NLEL+C+ PK CENF+K C+ GYY+GT FHRSIRNFMIQGGDPTGTG
Sbjct: 1 YVRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGR 60
Query: 356 GGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GGESIWGKPF+DEFKPN +H GRGVLSMANSGPNTN SQ
Sbjct: 61 GGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQ 99
|
This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159 |
| >gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-50
Identities = 63/98 (64%), Positives = 75/98 (76%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
V L T+LG I +EL+C+ PK CENF+ C +GYYNG FHR+I+ FM+Q GDPTGTG G
Sbjct: 3 VTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKG 62
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GESIWGK FEDEF+ H RGV+SMAN+GPNTN SQ
Sbjct: 63 GESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQ 100
|
Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153 |
| >gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 3e-48
Identities = 59/94 (62%), Positives = 66/94 (70%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESI 360
T+ G I++ L+ PKT ENF H NGYYN T FHR I+ FMIQ GDPTG GTGGESI
Sbjct: 4 TTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESI 63
Query: 361 WGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
WGK FEDEF P+ H LSMAN+GPNTN SQ
Sbjct: 64 WGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQ 97
|
This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148 |
| >gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 7e-45
Identities = 64/96 (66%), Positives = 74/96 (77%)
Query: 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGE 358
L T++G I LELY N PKTC+NF + + GYYNGT FHR I++FMIQGGDPTGTG GG
Sbjct: 2 LETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGA 61
Query: 359 SIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+GK FEDE P HTG G+LSMAN+GPNTN SQ
Sbjct: 62 SIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQ 97
|
These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146 |
| >gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 7e-44
Identities = 56/97 (57%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGE 358
L T+ G I +ELY + PKT ENF+ G+Y+GT FHR I FMIQGGDPTGTG GG
Sbjct: 2 LDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG- 60
Query: 359 SIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
S G F DE P H RG LSMAN+GPNTN SQ
Sbjct: 61 SGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQF 97
|
This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146 |
| >gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 2e-41
Identities = 53/100 (53%), Positives = 70/100 (70%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
G V L T+ G I++EL+ PK C NF++ C GYY+ T FHR + F+IQGGDPTGTG
Sbjct: 6 GKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTG 65
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
TGGESI+G+PF+DEF RG++ MAN+G ++N SQ
Sbjct: 66 TGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQ 105
|
C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171 |
| >gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 3e-41
Identities = 51/99 (51%), Positives = 65/99 (65%), Gaps = 5/99 (5%)
Query: 296 YVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGT 355
++ + T+LG I +EL+ + PKT ENF+ C+ G+Y+GT FHR I FMIQGGDPTG GT
Sbjct: 1 FLDITTNLGRIVIELFGDEAPKTVENFLSLCKKGFYDGTIFHRVIPGFMIQGGDPTGPGT 60
Query: 356 GGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GG+ + DEF H RG LSMA SGPN+ SQ
Sbjct: 61 GGK----RSIPDEFVSKLKHK-RGTLSMARSGPNSAGSQ 94
|
The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144 |
| >gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 4e-41
Identities = 51/102 (50%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Query: 296 YVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGT-G 354
V L T+ G I +ELY + PKT NF++ + G+Y+GT FHR I FMIQGGDPTG G
Sbjct: 1 TVILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDG 60
Query: 355 TGGESIWGKPFEDEFKPNYTHT-GRGVLSMANSG-PNTNTSQ 394
TGG PF+DE RG LSMA +G PN+N SQ
Sbjct: 61 TGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQ 99
|
Length = 158 |
| >gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-36
Identities = 57/104 (54%), Positives = 67/104 (64%), Gaps = 12/104 (11%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHC--ENG------YYNGTKFHRSIRNFMIQGGDPT- 351
G I +EL+ +V PKT ENF C E G Y G+ FHR I +FMIQGGD T
Sbjct: 12 EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTR 71
Query: 352 GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G GTGG+SI+G+ F DE FK HTG G+LSMAN+GPNTN SQ
Sbjct: 72 GNGTGGKSIYGEKFPDENFK--LKHTGPGLLSMANAGPNTNGSQ 113
|
This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164 |
| >gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-29
Identities = 52/103 (50%), Positives = 62/103 (60%), Gaps = 15/103 (14%)
Query: 304 GHINLELYCNVFPKTCENFMKHC---------ENGYYNGTKFHRSIRNFMIQGGDPT-GT 353
G I EL+ +V PKT ENF C +N +Y G+ FHR I FM QGGD T
Sbjct: 30 GRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHN 89
Query: 354 GTGGESIWGKPFEDEFKPNYT--HTGRGVLSMANSGPNTNTSQ 394
GTGGESI+G+ F DE N+ H G+LSMAN+GPNTN SQ
Sbjct: 90 GTGGESIYGRKFTDE---NFKLKHDQPGLLSMANAGPNTNGSQ 129
|
Length = 183 |
| >gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-28
Identities = 52/102 (50%), Positives = 64/102 (62%), Gaps = 14/102 (13%)
Query: 304 GHINLELYCNVFPKTCENFMKHCENGY--------YNGTKFHRSIRNFMIQGGD-PTGTG 354
G I +EL+ ++ PKT ENF + C + Y G +FHR I++FMIQGGD G G
Sbjct: 33 GRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG 92
Query: 355 TGGESIWGKPFEDEFKPNYT--HTGRGVLSMANSGPNTNTSQ 394
TG SI+G FEDE N+ HTG G+LSMANSGPNTN Q
Sbjct: 93 TGCVSIYGSKFEDE---NFIAKHTGPGLLSMANSGPNTNGCQ 131
|
Length = 186 |
| >gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM) | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-26
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 7/103 (6%)
Query: 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGE 358
L T+LG + ++L+ + P C NF+K C+ YYN F+ ++F+ Q GDPTGTG GGE
Sbjct: 2 LETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGE 61
Query: 359 SIWGKP-------FEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+ + FE E P H+ +G +SM N+G N N SQ
Sbjct: 62 SIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQ 104
|
This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166 |
| >gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 5e-17
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESI 360
TSLG I +ELY + P T ENF+ + G+Y+ T FHR I F+IQGG T E+
Sbjct: 4 TSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQKET- 62
Query: 361 WGKPFEDEFKPNYTHTG-RGVLSMANSG-PNTNTSQ 394
KP ++E + RG ++MA + P++ TSQ
Sbjct: 63 -LKPIKNE--AGNGLSNTRGTIAMARTNAPDSATSQ 95
|
coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155 |
| >gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-14
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 294 DGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGT 353
D +V L TS G+I LEL P + +NF+ + +G+YN T FHR I FMIQGG T
Sbjct: 28 DPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQ 87
Query: 354 GTGGESIWGKPFEDEFKPNYTHTGRGVLSMA-NSGPNTNTSQ 394
+ P ++E N RG ++MA + ++ TSQ
Sbjct: 88 MQQKKP--NPPIKNE-ADNGLRNTRGTIAMARTADKDSATSQ 126
|
Length = 190 |
| >gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 7e-11
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 12/103 (11%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
V T+ G I ++ + + P+T +NF+ +C G+YN T FHR I FMIQGG G G
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGG---GFEPG 58
Query: 357 GESIWGKPFEDEFKPNYTHTG----RGVLSMANSG-PNTNTSQ 394
+ K ++ K N + G RG L+MA + P++ T+Q
Sbjct: 59 MKQ---KATKEPIK-NEANNGLKNTRGTLAMARTQAPHSATAQ 97
|
Length = 164 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 4e-10
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 209
++++GL P+GLA+DW+ +LYWTD + +EV++LDG R
Sbjct: 3 LLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-08
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 256 KVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295
+ ++ S + PNG+A+D+ LYW D L IEV + DG
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 9e-08
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 232 MFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAID 272
++WTD I +NG R+ + + WPNGIA+D
Sbjct: 3 LYWTDSSLRASISVADLNG--SDRRTLFSEDLQWPNGIAVD 41
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 27/106 (25%)
Query: 316 PKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGG-ESIWGK----PFE---- 366
P T NF+ E G+Y+G +FHR F++Q GDP G G + GK P E
Sbjct: 19 PVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPE 78
Query: 367 DEFKPNYTHTGR----------------GVLSMANS--GPNTNTSQ 394
+ +P Y T G ++MA + PN+ +SQ
Sbjct: 79 GQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQ 124
|
Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176 |
| >gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 215 EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR 253
+ P +A+ + ++WTDWG IE ++G R
Sbjct: 6 SGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTNR 43
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43 |
| >gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 2e-05
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 187 EKLYWTDSET-NKLEVSSLDGKKRKVLYWEDIDQPRAIAL 225
+LYWTDS + V+ L+G R+ L+ ED+ P IA+
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAV 40
|
This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42 |
| >gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 304 GHINLELYCNVFPKTCENFMK--------HCENGY---YNGTKFHRSIRNF-MIQGGDPT 351
G + EL+ +V P+T ENF G Y T H RN +I G+
Sbjct: 67 GRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELD 126
Query: 352 GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTS 393
S G P DE ++ + HT RG+L+M + GP+T+ S
Sbjct: 127 SFNV---SSTGTPIADEGYR--HRHTERGLLTMISEGPHTSGS 164
|
Length = 249 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 395 | |||
| KOG1214|consensus | 1289 | 100.0 | ||
| KOG0881|consensus | 164 | 99.95 | ||
| KOG0883|consensus | 518 | 99.94 | ||
| KOG1214|consensus | 1289 | 99.92 | ||
| KOG0546|consensus | 372 | 99.91 | ||
| KOG0882|consensus | 558 | 99.9 | ||
| COG0652 | 158 | PpiB Peptidyl-prolyl cis-trans isomerase (rotamase | 99.9 | |
| KOG1215|consensus | 877 | 99.89 | ||
| KOG0880|consensus | 217 | 99.89 | ||
| KOG0884|consensus | 161 | 99.88 | ||
| cd01927 | 148 | cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ | 99.87 | |
| cd01928 | 153 | Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro | 99.86 | |
| KOG0879|consensus | 177 | 99.86 | ||
| KOG0885|consensus | 439 | 99.86 | ||
| cd01922 | 146 | cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c | 99.86 | |
| cd01923 | 159 | cyclophilin_RING cyclophilin_RING: cyclophilin-typ | 99.85 | |
| cd01925 | 171 | cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: | 99.85 | |
| cd01921 | 166 | cyclophilin_RRM cyclophilin_RRM: cyclophilin-type | 99.83 | |
| KOG0111|consensus | 298 | 99.82 | ||
| PRK10791 | 164 | peptidyl-prolyl cis-trans isomerase B (rotamase B) | 99.78 | |
| PRK10903 | 190 | peptidyl-prolyl cis-trans isomerase A (rotamase A) | 99.77 | |
| cd01920 | 155 | cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc | 99.77 | |
| cd01924 | 176 | cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc | 99.76 | |
| PLN03149 | 186 | peptidyl-prolyl isomerase H (cyclophilin H); Provi | 99.76 | |
| cd01926 | 164 | cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph | 99.75 | |
| PTZ00060 | 183 | cyclophilin; Provisional | 99.74 | |
| PTZ00221 | 249 | cyclophilin; Provisional | 99.71 | |
| KOG0415|consensus | 479 | 99.68 | ||
| cd00317 | 146 | cyclophilin cyclophilin: cyclophilin-type peptidyl | 99.66 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.62 | |
| KOG0865|consensus | 167 | 99.6 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.59 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.58 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.58 | |
| PF00160 | 155 | Pro_isomerase: Cyclophilin type peptidyl-prolyl ci | 99.52 | |
| KOG1215|consensus | 877 | 99.45 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.37 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.26 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.17 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.11 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.1 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.06 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 98.96 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.93 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.92 | |
| PF00058 | 42 | Ldl_recept_b: Low-density lipoprotein receptor rep | 98.9 | |
| KOG4659|consensus | 1899 | 98.89 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 98.88 | |
| KOG1520|consensus | 376 | 98.83 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.73 | |
| KOG1520|consensus | 376 | 98.69 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.68 | |
| KOG4659|consensus | 1899 | 98.67 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.6 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 98.56 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.54 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.51 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 98.47 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.46 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 98.42 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.42 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.41 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 98.37 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.27 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.27 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.23 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.2 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.2 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.19 | |
| KOG4499|consensus | 310 | 98.19 | ||
| KOG4499|consensus | 310 | 98.14 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.12 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 98.11 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.09 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.08 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.03 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.03 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.0 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.0 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.99 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.97 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.96 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.96 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.9 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.84 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.83 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 97.82 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.82 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.79 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.79 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.7 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 97.66 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 97.62 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 97.57 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 97.55 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.52 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.42 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.41 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.35 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.31 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.28 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.22 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.12 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 97.1 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 97.08 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.04 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 96.43 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 96.42 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 96.4 | |
| KOG0291|consensus | 893 | 96.29 | ||
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 96.27 | |
| KOG0266|consensus | 456 | 96.03 | ||
| KOG0279|consensus | 315 | 96.02 | ||
| PTZ00421 | 493 | coronin; Provisional | 95.97 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 95.92 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.89 | |
| KOG0310|consensus | 487 | 95.86 | ||
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 95.71 | |
| KOG0315|consensus | 311 | 95.43 | ||
| KOG0291|consensus | 893 | 95.27 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.06 | |
| KOG1984|consensus | 1007 | 95.02 | ||
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 94.89 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 94.88 | |
| KOG1446|consensus | 311 | 94.7 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 94.54 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 94.45 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.43 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 94.42 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 94.36 | |
| KOG0273|consensus | 524 | 94.33 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.23 | |
| PTZ00421 | 493 | coronin; Provisional | 93.88 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 93.82 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 93.74 | |
| KOG0289|consensus | 506 | 93.61 | ||
| KOG0285|consensus | 460 | 93.54 | ||
| PTZ00420 | 568 | coronin; Provisional | 93.49 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.45 | |
| KOG1407|consensus | 313 | 93.38 | ||
| KOG0285|consensus | 460 | 93.06 | ||
| KOG0318|consensus | 603 | 93.01 | ||
| KOG0318|consensus | 603 | 92.87 | ||
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 92.58 | |
| KOG0315|consensus | 311 | 92.57 | ||
| KOG0263|consensus | 707 | 92.43 | ||
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 92.17 | |
| KOG0272|consensus | 459 | 92.11 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 91.83 | |
| KOG0272|consensus | 459 | 91.8 | ||
| PTZ00420 | 568 | coronin; Provisional | 91.74 | |
| KOG0266|consensus | 456 | 91.43 | ||
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 91.14 | |
| KOG4378|consensus | 673 | 91.05 | ||
| smart00284 | 255 | OLF Olfactomedin-like domains. | 91.03 | |
| KOG0641|consensus | 350 | 90.94 | ||
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 90.88 | |
| KOG0294|consensus | 362 | 90.75 | ||
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 90.24 | |
| KOG1446|consensus | 311 | 90.16 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 89.83 | |
| KOG0270|consensus | 463 | 89.63 | ||
| KOG0646|consensus | 476 | 89.39 | ||
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 89.29 | |
| KOG0268|consensus | 433 | 88.84 | ||
| KOG1274|consensus | 933 | 88.77 | ||
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 88.19 | |
| KOG0279|consensus | 315 | 87.93 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 87.69 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 87.64 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 86.96 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 85.87 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 85.57 | |
| KOG2919|consensus | 406 | 85.47 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 85.07 | |
| KOG0310|consensus | 487 | 85.05 | ||
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 84.34 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 84.09 | |
| KOG0292|consensus | 1202 | 83.87 | ||
| KOG0292|consensus | 1202 | 83.81 | ||
| KOG2055|consensus | 514 | 83.22 | ||
| KOG0286|consensus | 343 | 82.46 | ||
| KOG0269|consensus | 839 | 82.27 | ||
| KOG4328|consensus | 498 | 82.18 | ||
| KOG0276|consensus | 794 | 81.86 | ||
| KOG1274|consensus | 933 | 81.84 | ||
| KOG0293|consensus | 519 | 80.77 | ||
| KOG0281|consensus | 499 | 80.68 | ||
| KOG4441|consensus | 571 | 80.59 |
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=317.38 Aligned_cols=261 Identities=29% Similarity=0.513 Sum_probs=219.2
Q ss_pred ccCcccccccCCC--CceeE--EEEEeeCCCC-----CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCC
Q psy13629 91 VQERCSFEKLQPD--GAYLL--DIRIANLSRP-----LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN 161 (395)
Q Consensus 91 ~~~~C~~~~~~~~--~~~~~--~I~~~~l~~~-----~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~ 161 (395)
+..+|+.+.+.+. ++|.+ .|....+.+. ...+++.-..+-++|||||..+++|||+|.....|.|+.++|.
T Consensus 978 p~~~~~v~p~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~ 1057 (1289)
T KOG1214|consen 978 PTPRPDVTPPSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGA 1057 (1289)
T ss_pred CCCCCCCcCCCCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccCC
Confidence 4456666544443 55555 4555555551 1223355556779999999999999999999999999999998
Q ss_pred CCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CC
Q psy13629 162 NVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EV 240 (395)
Q Consensus 162 ~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~ 240 (395)
+.++++..++.+|+||||||+.+++||||+.+.+|+|+.|||+.+++|+.+++.+|++|++|+.+|.||||||. ++
T Consensus 1058 ---Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRen 1134 (1289)
T KOG1214|consen 1058 ---EPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNREN 1134 (1289)
T ss_pred ---CCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999998 79
Q ss_pred CeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee--eeecee-eeeeeeccCCc
Q psy13629 241 PKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV--TSLGHI-NLELYCNVFPK 317 (395)
Q Consensus 241 ~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~--t~~g~~-~i~Lf~d~ap~ 317 (395)
++|++.+||| .+++++++++++.||||++|++.+.|.|+|+++++++.+.++|..|++ .++..+ ++.-|
T Consensus 1135 PkIets~mDG--~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~LqYPF~itsy------ 1206 (1289)
T KOG1214|consen 1135 PKIETSSMDG--ENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNNLQYPFSITSY------ 1206 (1289)
T ss_pred CcceeeccCC--ccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhcccCceeeeec------
Confidence 9999999999 999999999999999999999999999999999999999999999887 667776 77755
Q ss_pred cccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCeEEEeecC
Q psy13629 318 TCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANS 386 (395)
Q Consensus 318 t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G~l~ma~~ 386 (395)
....||++|+...|...++- ++.+.+++.+.......|+++.-..
T Consensus 1207 --------------~~~fY~TDWk~n~vvsv~~~----------~~~~td~~~p~~~s~lyGItav~~~ 1251 (1289)
T KOG1214|consen 1207 --------------ADHFYHTDWKRNGVVSVNKH----------SGQFTDEYLPEQRSHLYGITAVYPY 1251 (1289)
T ss_pred --------------cccceeeccccCceEEeecc----------ccccccccccccccceEEEEecccc
Confidence 45589999999888876543 3446666554444445788877654
|
|
| >KOG0881|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-29 Score=200.01 Aligned_cols=97 Identities=62% Similarity=1.081 Sum_probs=94.5
Q ss_pred eeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy13629 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGR 378 (395)
Q Consensus 299 ~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~ 378 (395)
.++..|.+.++||..++|.||.||..|+++|||+|..|||++++|+||||||+++|.||.+|+|..|+||...+|+|.+.
T Consensus 14 LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~dLkhTGA 93 (164)
T KOG0881|consen 14 LETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHSDLKHTGA 93 (164)
T ss_pred EeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhhhhcccch
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCCCCC
Q psy13629 379 GVLSMANSGPNTNTSQL 395 (395)
Q Consensus 379 G~l~ma~~~~~~~~sqf 395 (395)
|+|+|||+|||||||||
T Consensus 94 GILsMANaGPnTNgSQF 110 (164)
T KOG0881|consen 94 GILSMANAGPNTNGSQF 110 (164)
T ss_pred hhhhhhccCCCCCCceE
Confidence 99999999999999998
|
|
| >KOG0883|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-28 Score=230.91 Aligned_cols=109 Identities=70% Similarity=1.190 Sum_probs=105.0
Q ss_pred eeeeeccccceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCC
Q psy13629 287 FIEVMDYDGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFE 366 (395)
Q Consensus 287 ~I~~~~~dG~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~ 366 (395)
+-.++.-.|-.|.+|+.|.+.++|+-|.+|.+|+||+++|++|||+|+.|||.+++|+||||||+|+|.||++|||++|.
T Consensus 270 ry~rvKkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFk 349 (518)
T KOG0883|consen 270 RYTRVKKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFK 349 (518)
T ss_pred hhccccccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCccc
Confidence 33566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 367 DEFKPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 367 ~e~~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
||+.+.|+|+.||+|||||.|||||||||
T Consensus 350 DEf~~~l~H~gRGvlSMANsGpnTNgSQF 378 (518)
T KOG0883|consen 350 DEFCSNLSHDGRGVLSMANSGPNTNGSQF 378 (518)
T ss_pred cccCCCCCcCCcceEeeccCCCCCCCceE
Confidence 99999999999999999999999999998
|
|
| >KOG1214|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-25 Score=221.88 Aligned_cols=201 Identities=22% Similarity=0.342 Sum_probs=177.5
Q ss_pred ccCcccccccCCCCceeEEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE
Q psy13629 91 VQERCSFEKLQPDGAYLLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 170 (395)
Q Consensus 91 ~~~~C~~~~~~~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~ 170 (395)
+...|+.+-.-|..+.-+.|++..|.|.+..+++...+.+|.|||+|+..+.+||+|....+|.++.+||+ .+++++
T Consensus 1030 idfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~---~rkvLf 1106 (1289)
T KOG1214|consen 1030 IDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGS---ERKVLF 1106 (1289)
T ss_pred eecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCc---eeeEEE
Confidence 34556655444545555788999999977788889999999999999999999999999999999999998 788999
Q ss_pred eCCCCCcceEEEecCCCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEec
Q psy13629 171 TNGLITPDGLAIDWLTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248 (395)
Q Consensus 171 ~~~~~~p~glAVD~~~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~ 248 (395)
..++.+|++|++|.+.++|||||+ ++..|++.+|||+++++++.+++.-|+||.+||-++.|.|.|.| ..|++....
T Consensus 1107 ~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAG-t~rleC~~p 1185 (1289)
T KOG1214|consen 1107 YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAG-TKRLECTLP 1185 (1289)
T ss_pred eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecC-CcceeEecC
Confidence 999999999999999999999996 47799999999999999999999999999999999999999965 889999999
Q ss_pred CCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 249 NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 249 dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
+| ..|+++. +++++|.+|+-+ ++.+||+||+.|.|.++++.+...+.
T Consensus 1186 ~g--~gRR~i~-~~LqYPF~itsy--~~~fY~TDWk~n~vvsv~~~~~~~td 1232 (1289)
T KOG1214|consen 1186 DG--TGRRVIQ-NNLQYPFSITSY--ADHFYHTDWKRNGVVSVNKHSGQFTD 1232 (1289)
T ss_pred CC--Ccchhhh-hcccCceeeeec--cccceeeccccCceEEeecccccccc
Confidence 99 6777655 468899999887 56699999999999999988877665
|
|
| >KOG0546|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-25 Score=210.46 Aligned_cols=93 Identities=55% Similarity=0.909 Sum_probs=88.5
Q ss_pred eeceeeeeeeeccCCccccceeeeeccc-----------eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCC
Q psy13629 302 SLGHINLELYCNVFPKTCENFMKHCENG-----------YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEF 369 (395)
Q Consensus 302 ~~g~~~i~Lf~d~ap~t~~nf~~l~~~g-----------~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~ 369 (395)
..|+|.++||.|.+|+|++||++||++. .|+|+.||||+++|||||||++ ++|+||.+|||..|+||
T Consensus 21 ~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~FdDE- 99 (372)
T KOG0546|consen 21 PAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGEKFDDE- 99 (372)
T ss_pred ccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcccccccccccc-
Confidence 6788999999999999999999999852 5999999999999999999986 89999999999999999
Q ss_pred CCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 370 KPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 370 ~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
.+.++|+++|+|||||.|||||||||
T Consensus 100 nF~lKHdrpflLSMAN~GpNTNgSQF 125 (372)
T KOG0546|consen 100 NFELKHDRPFLLSMANRGPNTNGSQF 125 (372)
T ss_pred cceeccCcchhhhhhcCCCCCCCcce
Confidence 78999999999999999999999999
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-25 Score=210.72 Aligned_cols=95 Identities=60% Similarity=1.015 Sum_probs=94.0
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCeE
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRGV 380 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G~ 380 (395)
|..|.+.+-||++.+|+|++||-..|++|||+|..|||++++|+||+|||.|.|+||++|||+.|+||+.+.|+|+++-+
T Consensus 411 tt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~~lrhdrpft 490 (558)
T KOG0882|consen 411 TTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHPNLRHDRPFT 490 (558)
T ss_pred ecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCcccccCCCce
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCCC
Q psy13629 381 LSMANSGPNTNTSQL 395 (395)
Q Consensus 381 l~ma~~~~~~~~sqf 395 (395)
|||||+|||||||||
T Consensus 491 ~smanag~ntngsqf 505 (558)
T KOG0882|consen 491 VSMANAGPNTNGSQF 505 (558)
T ss_pred EEecccCCCCCCceE
Confidence 999999999999998
|
|
| >COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-24 Score=185.86 Aligned_cols=93 Identities=54% Similarity=0.883 Sum_probs=83.3
Q ss_pred eeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCC-CCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGT-GTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 299 ~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~-g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..++.|++.++||++.||+|++||++||+.+||+|+.|||++++|+|||||+.+. |++++. .+|++|+... .|.+
T Consensus 4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~~~~-~~~~ 79 (158)
T COG0652 4 LETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDENFAL-NGDR 79 (158)
T ss_pred eeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCCC---CCCccccccc-cccc
Confidence 3478899999999999999999999999999999999999999999999999876 888874 8899995433 3444
Q ss_pred --CeEEEeecCC-CCCCCCCC
Q psy13629 378 --RGVLSMANSG-PNTNTSQL 395 (395)
Q Consensus 378 --~G~l~ma~~~-~~~~~sqf 395 (395)
+|+|||||++ ||||||||
T Consensus 80 ~~~G~lsMA~~g~P~t~~SQF 100 (158)
T COG0652 80 HKRGTLSMARAGDPNSNGSQF 100 (158)
T ss_pred CCcceEeEcccCCcCCccCeE
Confidence 9999999999 99999998
|
|
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-22 Score=216.64 Aligned_cols=207 Identities=37% Similarity=0.729 Sum_probs=183.0
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
++|+.+.++.. .+....+....+.++++|..++.+||+|....+|.+...++.. ...+...+.-.+.++|+||+.+
T Consensus 417 ~~ir~~~~~~~-~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~---~~~~~~~g~~~~~~lavD~~~~ 492 (877)
T KOG1215|consen 417 HDIRRISLDCS-DVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSS---ECELCGDGLCIPEGLAVDWIGD 492 (877)
T ss_pred ccceecccCCC-cceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCc---cceEeccCccccCcEEEEeccC
Confidence 48888888773 5666777778999999999999999999999999999999973 3446777889999999999999
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
++||+|.....|.+.+++|..+.+++...+..|+.++++|..+++||+||+..++|+|+.||| ..+..++..++.||+
T Consensus 493 ~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg--~~~~~l~~~~~~~p~ 570 (877)
T KOG1215|consen 493 NIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDG--SERAVLVTNGILWPN 570 (877)
T ss_pred CceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCC--CCceEEEeCCccCCC
Confidence 999999999999999999999999998888999999999999999999999767999999999 899999999999999
Q ss_pred eEEEeccccEEEEecccee-eeeeeccccceee-e--eeecee-eeeeeeccCCcccc
Q psy13629 268 GIAIDFNNRLLYWIDGRLT-FIEVMDYDGYVRL-V--TSLGHI-NLELYCNVFPKTCE 320 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~-~I~~~~~dG~~~~-~--t~~g~~-~i~Lf~d~ap~t~~ 320 (395)
||++|...+++||+|.... .|++++.+|..++ . ..+.++ .+++|++...++..
T Consensus 571 glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~ 628 (877)
T KOG1215|consen 571 GLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDW 628 (877)
T ss_pred cceEEeecceeEEEcccCCcceeeeecCCCceEEeccccCCCceEEEEecceeEEeec
Confidence 9999999999999999999 7999999999996 3 445566 88988554444433
|
|
| >KOG0880|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-24 Score=182.46 Aligned_cols=94 Identities=54% Similarity=0.870 Sum_probs=87.7
Q ss_pred eeeceeeeeeeeccCCccccceeeeecc---c-eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCEN---G-YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTH 375 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~---g-~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~ 375 (395)
...+++.+.||...+|+|++||.+||.+ + -|.++.|||++++|+|||||.+ +.|.|+.+|+|++|+|| .+.|+|
T Consensus 51 ~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DE-Nf~LkH 129 (217)
T KOG0880|consen 51 EPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDE-NFKLKH 129 (217)
T ss_pred EeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCc-cceeec
Confidence 4678899999999999999999999983 2 3999999999999999999987 67999999999999999 579999
Q ss_pred CCCeEEEeecCCCCCCCCCC
Q psy13629 376 TGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 376 ~~~G~l~ma~~~~~~~~sqf 395 (395)
+++|.|||||.|||||||||
T Consensus 130 ~rpG~lSMAn~GpDtNGsQF 149 (217)
T KOG0880|consen 130 DRPGRLSMANAGPDTNGSQF 149 (217)
T ss_pred CCCceEeeeccCCCCCCceE
Confidence 99999999999999999998
|
|
| >KOG0884|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-24 Score=169.12 Aligned_cols=96 Identities=58% Similarity=1.081 Sum_probs=93.4
Q ss_pred eeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCe
Q psy13629 300 VTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRG 379 (395)
Q Consensus 300 ~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G 379 (395)
.+..|.+.|++|-+.+|++|+||+++|...||+++.|||-+++|++|+|+++.+|+||.+|+|++|+||+..-|+|+.||
T Consensus 6 ht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lkh~~rg 85 (161)
T KOG0884|consen 6 HTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLKHNVRG 85 (161)
T ss_pred eeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHhhccce
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCCCCC
Q psy13629 380 VLSMANSGPNTNTSQL 395 (395)
Q Consensus 380 ~l~ma~~~~~~~~sqf 395 (395)
.|+|||.|||+|||||
T Consensus 86 ~vsmanngp~tn~sqf 101 (161)
T KOG0884|consen 86 VVSMANNGPNTNGSQF 101 (161)
T ss_pred eEEcccCCCCCCCceE
Confidence 9999999999999998
|
|
| >cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=174.43 Aligned_cols=96 Identities=61% Similarity=1.005 Sum_probs=91.7
Q ss_pred eeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCe
Q psy13629 300 VTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRG 379 (395)
Q Consensus 300 ~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G 379 (395)
+|+.|.+.++||.+.+|.+++||++||+.+||+++.|||++++|++|+||+.++|.++.++++..+++|..+.++|.++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~~G 82 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDRPY 82 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCCCe
Confidence 46789999999999999999999999999999999999999999999999998999999999999999988889999899
Q ss_pred EEEeecCCCCCCCCCC
Q psy13629 380 VLSMANSGPNTNTSQL 395 (395)
Q Consensus 380 ~l~ma~~~~~~~~sqf 395 (395)
+||||+.+||+++|||
T Consensus 83 ~l~ma~~~~~s~~SqF 98 (148)
T cd01927 83 TLSMANAGPNTNGSQF 98 (148)
T ss_pred EEEEeeCCCCCCCceE
Confidence 9999999999999998
|
This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. |
| >cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-22 Score=174.77 Aligned_cols=98 Identities=63% Similarity=1.180 Sum_probs=92.6
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..+|+.|.+.++||.+.+|.+++||++||+.+||+|+.|||++++|++|+||+.++|+++.++++..+++|..+.++|+.
T Consensus 4 ~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~~~ 83 (153)
T cd01928 4 TLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLKHDS 83 (153)
T ss_pred EEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCCcCC
Confidence 34578999999999999999999999999999999999999999999999999989999999999999999877888988
Q ss_pred CeEEEeecCCCCCCCCCC
Q psy13629 378 RGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~~~~~~sqf 395 (395)
+|+||||+++||++||||
T Consensus 84 ~G~v~ma~~~~~~~~SqF 101 (153)
T cd01928 84 RGVVSMANNGPNTNGSQF 101 (153)
T ss_pred CcEEEEeeCCCCCcccEE
Confidence 999999999999999998
|
Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. |
| >KOG0879|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-23 Score=166.64 Aligned_cols=94 Identities=50% Similarity=0.913 Sum_probs=88.4
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccce--------ecceeEEEEecCcEEEecCC-CCCCCCCcccCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENGY--------YNGTKFHRSIRNFMIQGGDP-TGTGTGGESIWGKPFEDEFKP 371 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~--------y~~~~~~r~~~~~~iq~g~~-~~~g~~~~~~~~~~~~~e~~~ 371 (395)
...|++.++||.|.+|+|++||.++|+..| |+++.|||++++|+|||||+ .+.|+|..+|+|.+|+|| .+
T Consensus 22 ~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F~DE-NF 100 (177)
T KOG0879|consen 22 RPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTFPDE-NF 100 (177)
T ss_pred EEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCCCCc-ce
Confidence 467889999999999999999999999876 99999999999999999997 488999999999999999 67
Q ss_pred CCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 372 NYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 372 ~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
.++|.++|+|||||+|++|||+||
T Consensus 101 tlkH~~PGlLSMANsG~~tNGCQF 124 (177)
T KOG0879|consen 101 TLKHDGPGLLSMANSGKDTNGCQF 124 (177)
T ss_pred eeecCCCceeeccccCCCCCCceE
Confidence 899999999999999999999998
|
|
| >KOG0885|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-23 Score=191.67 Aligned_cols=102 Identities=52% Similarity=1.008 Sum_probs=97.7
Q ss_pred ccceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCC
Q psy13629 294 DGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNY 373 (395)
Q Consensus 294 dG~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~ 373 (395)
.|.....|..|.|.|+|....+|.+|.||++||-.|||+|+.|||++|+|.+|||||+++|+||.+|+|.+|++|++++|
T Consensus 12 tgkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE~h~Rl 91 (439)
T KOG0885|consen 12 TGKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADEFHPRL 91 (439)
T ss_pred cceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhhcCcce
Confidence 35555668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEeecCCCCCCCCCC
Q psy13629 374 THTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 374 ~~~~~G~l~ma~~~~~~~~sqf 395 (395)
++.+||+|+|||++.+.|||||
T Consensus 92 rf~rrGlvgmana~~~~ngsqF 113 (439)
T KOG0885|consen 92 RFNRRGLVGMANAGNDDNGSQF 113 (439)
T ss_pred eeeccceeeecccCCCCCCceE
Confidence 9999999999999999999998
|
|
| >cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-22 Score=171.78 Aligned_cols=96 Identities=66% Similarity=1.127 Sum_probs=91.5
Q ss_pred eeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCe
Q psy13629 300 VTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRG 379 (395)
Q Consensus 300 ~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G 379 (395)
+|+.|.+.++||.+.+|.+++||++||+.+||+++.|||++++|++|+||+.++|.++.++++.++++|..+.++|+++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~~G 82 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTGAG 82 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCCCe
Confidence 46789999999999999999999999999999999999999999999999988889999999999999977889999999
Q ss_pred EEEeecCCCCCCCCCC
Q psy13629 380 VLSMANSGPNTNTSQL 395 (395)
Q Consensus 380 ~l~ma~~~~~~~~sqf 395 (395)
+||||+.+||+++|||
T Consensus 83 ~l~ma~~~~~s~~sqF 98 (146)
T cd01922 83 ILSMANAGPNTNGSQF 98 (146)
T ss_pred EEEEeeCCCCCCccEE
Confidence 9999999999999998
|
These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. |
| >cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-22 Score=172.50 Aligned_cols=98 Identities=77% Similarity=1.328 Sum_probs=92.9
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..+|+.|.+.++||.+.+|.+++||++||+.+||+++.|||++++|+||+||+.++|.++.++++..+++|..+.++|+.
T Consensus 3 ~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h~~ 82 (159)
T cd01923 3 RLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSHDG 82 (159)
T ss_pred EEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCcCC
Confidence 34578999999999999999999999999999999999999999999999999989999999999999999878888999
Q ss_pred CeEEEeecCCCCCCCCCC
Q psy13629 378 RGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~~~~~~sqf 395 (395)
+|+||||+.+||++||||
T Consensus 83 ~G~v~ma~~~~~s~~sqF 100 (159)
T cd01923 83 RGVLSMANSGPNTNGSQF 100 (159)
T ss_pred CcEEEEeeCCCCCcccEE
Confidence 999999999999999998
|
This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. |
| >cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-22 Score=173.52 Aligned_cols=101 Identities=52% Similarity=0.990 Sum_probs=94.6
Q ss_pred cceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCC
Q psy13629 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYT 374 (395)
Q Consensus 295 G~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~ 374 (395)
|+....|+.|.+.++||.+.+|.+++||+.||+.+||+++.|||++++|+||+||+.++|.++.+++|..+++|..+.++
T Consensus 6 ~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~~~~~ 85 (171)
T cd01925 6 GKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFHSRLR 85 (171)
T ss_pred cEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCcccccCcC
Confidence 44455689999999999999999999999999999999999999999999999999989999999999999999877888
Q ss_pred CCCCeEEEeecCCCCCCCCCC
Q psy13629 375 HTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 375 ~~~~G~l~ma~~~~~~~~sqf 395 (395)
|+++|+||||+.++++++|||
T Consensus 86 ~~~~G~l~ma~~g~~s~~sqF 106 (171)
T cd01925 86 FNRRGLVGMANAGDDSNGSQF 106 (171)
T ss_pred CCCCcEEEECcCCCCCcccEE
Confidence 889999999999999999998
|
C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. |
| >cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM) | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-21 Score=169.59 Aligned_cols=96 Identities=44% Similarity=0.773 Sum_probs=88.3
Q ss_pred eeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCC-------CCCCCCCCCC
Q psy13629 300 VTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWG-------KPFEDEFKPN 372 (395)
Q Consensus 300 ~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~-------~~~~~e~~~~ 372 (395)
+|+.|.+.++||.+.+|.+++||++||+.+||+++.|||++++|+||+||+.++|.++.++++ ..+++|..+.
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~~~ 82 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEILPL 82 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccCCc
Confidence 467899999999999999999999999999999999999999999999999888888887764 3577887778
Q ss_pred CCCCCCeEEEeecCCCCCCCCCC
Q psy13629 373 YTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 373 ~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
++|+.+|+||||+.++|+++|||
T Consensus 83 ~~h~~~G~l~ma~~~~~~~~SQF 105 (166)
T cd01921 83 LKHSKKGTVSMVNAGDNLNGSQF 105 (166)
T ss_pred cccCCceEEEEeECCCCCccceE
Confidence 89989999999999999999998
|
This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. |
| >KOG0111|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-21 Score=169.28 Aligned_cols=94 Identities=54% Similarity=0.850 Sum_probs=87.8
Q ss_pred eeeceeeeeeeeccCCccccceeeeecc--ce-ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCEN--GY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~--g~-y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
...|++.+.|..|..|.|++||.+||.. || |+|+.|||++|.|++||||++ ++|+||.+|||..|.|| .+.|+|.
T Consensus 148 ~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfdde-nf~lkht 226 (298)
T KOG0111|consen 148 DRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDE-NFTLKHT 226 (298)
T ss_pred cccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccccccccc-ceeeecC
Confidence 3567789999999999999999999974 55 999999999999999999987 89999999999999999 6789999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
.+|+|+|||+|+|||||||
T Consensus 227 ~pgtlsmansgantngsqf 245 (298)
T KOG0111|consen 227 MPGTLSMANSGANTNGSQF 245 (298)
T ss_pred CCceeeccccCCCCCCceE
Confidence 9999999999999999998
|
|
| >PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-19 Score=157.60 Aligned_cols=94 Identities=35% Similarity=0.635 Sum_probs=79.5
Q ss_pred eeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy13629 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGR 378 (395)
Q Consensus 299 ~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~ 378 (395)
.+|..|.+.++||.+.+|.+++||++||+.+||+++.|||++++|+||||++. .+.+. ..++..+.+|....++| .+
T Consensus 4 ~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~-~~~~~-~~~~~~~~~e~~~~~~~-~~ 80 (164)
T PRK10791 4 FHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFE-PGMKQ-KATKEPIKNEANNGLKN-TR 80 (164)
T ss_pred EEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcC-CCCCc-CCCCCCcCCcccccccC-CC
Confidence 44789999999999999999999999999999999999999999999999864 22221 22356778886666666 59
Q ss_pred eEEEeecCC-CCCCCCCC
Q psy13629 379 GVLSMANSG-PNTNTSQL 395 (395)
Q Consensus 379 G~l~ma~~~-~~~~~sqf 395 (395)
|+||||+.+ ||+|||||
T Consensus 81 G~lsma~~~~p~s~~SQF 98 (164)
T PRK10791 81 GTLAMARTQAPHSATAQF 98 (164)
T ss_pred cEEEECCCCCcCCccceE
Confidence 999999985 99999998
|
|
| >PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-19 Score=159.63 Aligned_cols=95 Identities=37% Similarity=0.561 Sum_probs=80.2
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..+|..|.+.++||.+.+|.+++||++||+.+||+|+.|||++++|+||||++.+...+ ..++..+.+|....++| .
T Consensus 32 ~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~--~~~~~~~~~e~~~~l~~-~ 108 (190)
T PRK10903 32 LLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ--KKPNPPIKNEADNGLRN-T 108 (190)
T ss_pred EEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCC--CCCCCcccCcccccCcC-C
Confidence 34588999999999999999999999999999999999999999999999997643222 22356788886556654 5
Q ss_pred CeEEEeecCC-CCCCCCCC
Q psy13629 378 RGVLSMANSG-PNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~-~~~~~sqf 395 (395)
+|+|||||.+ ||+|||||
T Consensus 109 ~G~lama~~~~~~sn~SQF 127 (190)
T PRK10903 109 RGTIAMARTADKDSATSQF 127 (190)
T ss_pred CcEEEeCCCCCCCCcccEE
Confidence 9999999875 99999998
|
|
| >cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-19 Score=154.64 Aligned_cols=93 Identities=40% Similarity=0.592 Sum_probs=78.9
Q ss_pred eeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCe
Q psy13629 300 VTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRG 379 (395)
Q Consensus 300 ~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G 379 (395)
+|..|.+.++||.+.+|.+++||+.||+.+||+++.|||++++|+||+|++...+.+. .++..+.+|....++ +.+|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~--~~~~~~~~e~~~~~~-~~~G 79 (155)
T cd01920 3 QTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQK--ETLKPIKNEAGNGLS-NTRG 79 (155)
T ss_pred EecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCcc--ccCCcccCccccccc-CCce
Confidence 3678899999999999999999999999999999999999999999999987444332 235667778555554 5699
Q ss_pred EEEeecCC-CCCCCCCC
Q psy13629 380 VLSMANSG-PNTNTSQL 395 (395)
Q Consensus 380 ~l~ma~~~-~~~~~sqf 395 (395)
+||||+.+ ||+|+|||
T Consensus 80 ~v~ma~~~~~~s~~SqF 96 (155)
T cd01920 80 TIAMARTNAPDSATSQF 96 (155)
T ss_pred EEEECCCCCCCCccceE
Confidence 99999875 99999998
|
coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. |
| >cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-19 Score=156.90 Aligned_cols=95 Identities=35% Similarity=0.632 Sum_probs=78.3
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCC---------------------Ccc
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG---------------------GES 359 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~---------------------~~~ 359 (395)
|+.|.+.++||.+.+|.++.||+.||+.+||+++.|||++++|+||+||+.+.+.+ +.+
T Consensus 4 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~ 83 (176)
T cd01924 4 TDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQP 83 (176)
T ss_pred cccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCCC
Confidence 57888999999999999999999999999999999999999999999998755433 223
Q ss_pred cCCCCCC----CCCCCCCCCCCCeEEEeecCC--CCCCCCCC
Q psy13629 360 IWGKPFE----DEFKPNYTHTGRGVLSMANSG--PNTNTSQL 395 (395)
Q Consensus 360 ~~~~~~~----~e~~~~~~~~~~G~l~ma~~~--~~~~~sqf 395 (395)
+++..+. ++..+...|+.+|+|||||.+ ||+++|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQF 125 (176)
T cd01924 84 VYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQF 125 (176)
T ss_pred ccCcccccccccccccccccCCCCeEEEccCCCCCCCccceE
Confidence 4444432 232345567779999999987 79999998
|
Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. |
| >PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.8e-19 Score=157.51 Aligned_cols=93 Identities=55% Similarity=0.930 Sum_probs=84.6
Q ss_pred eeceeeeeeeeccCCccccceeeeeccce--------ecceeEEEEecCcEEEecCC-CCCCCCCcccCCCCCCCCCCCC
Q psy13629 302 SLGHINLELYCNVFPKTCENFMKHCENGY--------YNGTKFHRSIRNFMIQGGDP-TGTGTGGESIWGKPFEDEFKPN 372 (395)
Q Consensus 302 ~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~--------y~~~~~~r~~~~~~iq~g~~-~~~g~~~~~~~~~~~~~e~~~~ 372 (395)
..|++.++||.+.+|.+++||+.||+.++ |+++.|||++++|+||+||+ .+.|+|+.++++..|++|. ..
T Consensus 31 ~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e~-~~ 109 (186)
T PLN03149 31 PAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDEN-FI 109 (186)
T ss_pred ccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCcc-cc
Confidence 57889999999999999999999997654 99999999999999999996 4778888899999999885 45
Q ss_pred CCCCCCeEEEeecCCCCCCCCCC
Q psy13629 373 YTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 373 ~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
++|+.+|+||||+.+||+++|||
T Consensus 110 ~~h~~~G~lsma~~g~~s~~sqF 132 (186)
T PLN03149 110 AKHTGPGLLSMANSGPNTNGCQF 132 (186)
T ss_pred cccCCCCEEEEeeCCCCCcccEE
Confidence 67888999999999999999998
|
|
| >cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-18 Score=152.96 Aligned_cols=94 Identities=57% Similarity=0.969 Sum_probs=85.6
Q ss_pred eeeceeeeeeeeccCCccccceeeeec--cc------eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE--NG------YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKP 371 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~--~g------~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~ 371 (395)
+..|.+.++||.+.+|.+++||++||+ .+ +|+++.|||++++|+||+||+. ++|.++.++++..+++| ..
T Consensus 12 ~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~e-~~ 90 (164)
T cd01926 12 EPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPDE-NF 90 (164)
T ss_pred eeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCCC-Cc
Confidence 368889999999999999999999998 35 8999999999999999999974 67888889999999988 45
Q ss_pred CCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 372 NYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 372 ~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
.++|+.+|+||||+.+||+++|||
T Consensus 91 ~~~h~~~G~lsma~~~~~~~~sqF 114 (164)
T cd01926 91 KLKHTGPGLLSMANAGPNTNGSQF 114 (164)
T ss_pred cccCCCccEEEeeECCCCCcccEE
Confidence 788988999999999999999998
|
This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl |
| >PTZ00060 cyclophilin; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-18 Score=153.86 Aligned_cols=94 Identities=54% Similarity=0.850 Sum_probs=85.5
Q ss_pred eeeceeeeeeeeccCCccccceeeeec---------cceecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE---------NGYYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFK 370 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~---------~g~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~ 370 (395)
+..|.+.++||.+.+|.+++||++||+ .++|+++.|||++++++||+||+. ++|.++.+++|..+++| .
T Consensus 27 ~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~~e-~ 105 (183)
T PTZ00060 27 APAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFTDE-N 105 (183)
T ss_pred EeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccCCc-c
Confidence 357889999999999999999999996 569999999999999999999975 57888888999999888 4
Q ss_pred CCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 371 PNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 371 ~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
..++|..+|+||||+.++|+++|||
T Consensus 106 ~~~~h~~~G~lsma~~g~~~~~sqF 130 (183)
T PTZ00060 106 FKLKHDQPGLLSMANAGPNTNGSQF 130 (183)
T ss_pred ccccCCCCCEEEeccCCCCCCcceE
Confidence 5778988999999999999999998
|
|
| >PTZ00221 cyclophilin; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-18 Score=155.02 Aligned_cols=90 Identities=34% Similarity=0.431 Sum_probs=78.9
Q ss_pred eeceeeeeeeeccCCccccceeeeeccc-----------eecceeEEEEecC-cEEEecCCCCCCCCCcccCCCCCCCCC
Q psy13629 302 SLGHINLELYCNVFPKTCENFMKHCENG-----------YYNGTKFHRSIRN-FMIQGGDPTGTGTGGESIWGKPFEDEF 369 (395)
Q Consensus 302 ~~g~~~i~Lf~d~ap~t~~nf~~l~~~g-----------~y~~~~~~r~~~~-~~iq~g~~~~~g~~~~~~~~~~~~~e~ 369 (395)
..|++.++||.+.+|.|++||+.||++. +|+++.|||++++ |+||+||+.+. +.+++|..|++|.
T Consensus 65 ~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~---g~s~~G~~f~dE~ 141 (249)
T PTZ00221 65 LAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF---NVSSTGTPIADEG 141 (249)
T ss_pred ecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC---CccCCCCcccCcc
Confidence 5678999999999999999999999743 3999999999986 89999998643 3456788999994
Q ss_pred CCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 370 KPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 370 ~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+.++|+++|+||||+.+||+|||||
T Consensus 142 -~~~~h~~~G~LsMan~GpntngSQF 166 (249)
T PTZ00221 142 -YRHRHTERGLLTMISEGPHTSGSVF 166 (249)
T ss_pred -ccccCCCCCEEEeCcCCCCCccceE
Confidence 5778999999999999999999999
|
|
| >KOG0415|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-17 Score=154.32 Aligned_cols=98 Identities=47% Similarity=0.809 Sum_probs=92.6
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCC-------CCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGK-------PFEDEFK 370 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~-------~~~~e~~ 370 (395)
.++|.+|.+.|.||-+..|.+|-||++||+-.||+.+.||.+.++|.+|.|||+|+|.||.+|||. .|..|+.
T Consensus 4 lieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffeaE~~ 83 (479)
T KOG0415|consen 4 LIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEAEFL 83 (479)
T ss_pred EEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhhhhc
Confidence 345889999999999999999999999999999999999999999999999999999999999853 3788999
Q ss_pred CCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 371 PNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 371 ~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+.++|.+.|+|||++.|.|-+||||
T Consensus 84 p~l~Hsk~G~vsmvs~g~n~~gSQF 108 (479)
T KOG0415|consen 84 PKLKHSKMGTVSMVSAGENLNGSQF 108 (479)
T ss_pred ccccccccceEEeecCCcccccceE
Confidence 9999999999999999999999998
|
|
| >cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-17 Score=138.75 Aligned_cols=95 Identities=58% Similarity=0.865 Sum_probs=84.0
Q ss_pred eeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCCe
Q psy13629 300 VTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRG 379 (395)
Q Consensus 300 ~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~G 379 (395)
+|+.|.+.++||.+.+|.+++||++||+.++|+++.|||+++++++|+|++...+.++ +.++..+++|..+...|+.+|
T Consensus 3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~~G 81 (146)
T cd00317 3 DTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHRRG 81 (146)
T ss_pred EeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCCCc
Confidence 3567889999999999999999999999999999999999999999999987554432 455778999988777677899
Q ss_pred EEEeecCCCCCCCCCC
Q psy13629 380 VLSMANSGPNTNTSQL 395 (395)
Q Consensus 380 ~l~ma~~~~~~~~sqf 395 (395)
+|+|++.++++++|||
T Consensus 82 ~v~~~~~~~~~~~sqF 97 (146)
T cd00317 82 TLSMANAGPNTNGSQF 97 (146)
T ss_pred EEEEeeCCCCCcccEE
Confidence 9999999999999998
|
This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=129.51 Aligned_cols=179 Identities=22% Similarity=0.244 Sum_probs=129.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-----CCCCcceEEEe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-----GLITPDGLAID 183 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-----~~~~p~glAVD 183 (395)
.|.+++.++ ......... .+.|++++..++.||+++... +.+++.+.. ..+.+... ....|+++++|
T Consensus 23 ~i~~~~~~~-~~~~~~~~~--~~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g---~~~~~~~~~~~~~~~~~~ND~~vd 94 (246)
T PF08450_consen 23 RIYRVDPDT-GEVEVIDLP--GPNGMAFDRPDGRLYVADSGG--IAVVDPDTG---KVTVLADLPDGGVPFNRPNDVAVD 94 (246)
T ss_dssp EEEEEETTT-TEEEEEESS--SEEEEEEECTTSEEEEEETTC--EEEEETTTT---EEEEEEEEETTCSCTEEEEEEEE-
T ss_pred EEEEEECCC-CeEEEEecC--CCceEEEEccCCEEEEEEcCc--eEEEecCCC---cEEEEeeccCCCcccCCCceEEEc
Confidence 567788776 333332222 299999997779999999543 344466654 33444432 56789999999
Q ss_pred cCCCeEEEEeCCC--------CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCC---C
Q psy13629 184 WLTEKLYWTDSET--------NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGD---P 252 (395)
Q Consensus 184 ~~~~~LYwtd~~~--------~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~---~ 252 (395)
+ .|+||+++... ++|++++.+++ ...+. ..+..|+||+++|+++.||++| ....+|.+++++.. .
T Consensus 95 ~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~-~~~~~pNGi~~s~dg~~lyv~d-s~~~~i~~~~~~~~~~~~ 170 (246)
T PF08450_consen 95 P-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVA-DGLGFPNGIAFSPDGKTLYVAD-SFNGRIWRFDLDADGGEL 170 (246)
T ss_dssp T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEE-EEESSEEEEEEETTSSEEEEEE-TTTTEEEEEEEETTTCCE
T ss_pred C-CCCEEEEecCCCccccccccceEEECCCCe-EEEEe-cCcccccceEECCcchheeecc-cccceeEEEeccccccce
Confidence 8 67799999543 67999999944 33444 6789999999999999999999 44788999999742 1
Q ss_pred cceEEEEecC--CcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 253 RHRKVIVDST--IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 253 ~~~~~lv~~~--~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
.+++.+.... .+.|.||++| .+++||+++...++|.+++.+|.....
T Consensus 171 ~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~G~~~~~ 219 (246)
T PF08450_consen 171 SNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPDGKLLRE 219 (246)
T ss_dssp EEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETTSCEEEE
T ss_pred eeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCCccEEEE
Confidence 2345554433 2359999999 577999999999999999999886654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0865|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-16 Score=136.43 Aligned_cols=94 Identities=54% Similarity=0.912 Sum_probs=84.0
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccc--e-ecceeEEE---EecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENG--Y-YNGTKFHR---SIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNY 373 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g--~-y~~~~~~r---~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~ 373 (395)
..++++.++||.|..|.|++||.+++... + |++..||| .+++|++|+||.+ ++|+|+.+|+++.|+|| .+.+
T Consensus 15 ~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~De-nFil 93 (167)
T KOG0865|consen 15 EPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDE-NFIL 93 (167)
T ss_pred ccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCc-CcEE
Confidence 35566889999999999999999999742 2 89999999 4457999999986 78999999999999999 6799
Q ss_pred CCCCCeEEEeecCCCCCCCCCC
Q psy13629 374 THTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 374 ~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+|..+|+|+|||.+||+|||||
T Consensus 94 khtgpGiLSmaNagpntngsqf 115 (167)
T KOG0865|consen 94 KHTGPGILSMANAGPNTNGSQF 115 (167)
T ss_pred ecCCCCeeehhhcCCCccccEE
Confidence 9999999999999999999998
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-13 Score=149.85 Aligned_cols=184 Identities=16% Similarity=0.173 Sum_probs=138.3
Q ss_pred EEEEEeeCCCCCccEEecC--------------CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-
Q psy13629 108 LDIRIANLSRPLKPVTIIK--------------DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN- 172 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~--------------~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~- 172 (395)
+.|++++.++ .....+-. .+..|.||++|..++.||++|..+++|+++++.+. ...++...
T Consensus 590 ~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~---~V~tlag~G 665 (1057)
T PLN02919 590 NRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNE---TVRTLAGNG 665 (1057)
T ss_pred CeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCC---EEEEEeccC
Confidence 4678888876 22222211 24579999999999999999999999999998764 22333211
Q ss_pred ---------------CCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEe--------------cCCCCceeE
Q psy13629 173 ---------------GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW--------------EDIDQPRAI 223 (395)
Q Consensus 173 ---------------~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~--------------~~~~~P~~i 223 (395)
.+..|.++++|+.++.||++|..+++|.+.+..+....++.. ..+..|.||
T Consensus 666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GI 745 (1057)
T PLN02919 666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGI 745 (1057)
T ss_pred cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEE
Confidence 156899999999899999999999999999987665544321 135789999
Q ss_pred EEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe---------------------cCCcCceeEEEeccccEEEEec
Q psy13629 224 ALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD---------------------STIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 224 avdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~---------------------~~~~~P~glalD~~~~rLYwaD 282 (395)
+++|..++||++|.+ ..+|.++++++ ....++.. ..+..|.|+++|. +++||++|
T Consensus 746 avspdG~~LYVADs~-n~~Irv~D~~t--g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVAD 821 (1057)
T PLN02919 746 SLSPDLKELYIADSE-SSSIRALDLKT--GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVAD 821 (1057)
T ss_pred EEeCCCCEEEEEECC-CCeEEEEECCC--CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEE
Confidence 999999999999954 78999999975 23333321 1245799999994 45799999
Q ss_pred cceeeeeeeccccceee
Q psy13629 283 GRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 283 ~~~~~I~~~~~dG~~~~ 299 (395)
..+++|.+++.++....
T Consensus 822 s~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 822 SYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCCEEEEEECCCCeEE
Confidence 99999999998765544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-13 Score=127.82 Aligned_cols=153 Identities=27% Similarity=0.319 Sum_probs=120.8
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceE
Q psy13629 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 210 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~ 210 (395)
+.|..||..++.|||+|...++|++++.++. . ..++.. ..|.|++++..++.||+++. ..+.+.+++....+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~-~~~~~~--~~~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTG---E-VEVIDL--PGPNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTT---E-EEEEES--SSEEEEEEECTTSEEEEEET--TCEEEEETTTTEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCC---e-EEEEec--CCCceEEEEccCCEEEEEEc--CceEEEecCCCcEE
Confidence 5789999999999999999999999999985 2 222222 23999999977899999996 44555598887777
Q ss_pred EEEec-----CCCCceeEEEeCCCCeEEEEeeCCC-------CeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEE
Q psy13629 211 VLYWE-----DIDQPRAIALVPQDSIMFWTDWGEV-------PKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278 (395)
Q Consensus 211 ~l~~~-----~~~~P~~iavdp~~g~LYwtd~~~~-------~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rL 278 (395)
.+... ....|+++++|+ .|.||+|+.+.. .+|++++.+| . . ..+...+..||||+++++++.|
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~--~-~-~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDG--K-V-TVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTS--E-E-EEEEEEESSEEEEEEETTSSEE
T ss_pred EEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCC--e-E-EEEecCcccccceEECCcchhe
Confidence 76653 578899999998 567999996521 5699999997 3 2 2334457889999999999999
Q ss_pred EEeccceeeeeeeccccc
Q psy13629 279 YWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 279 YwaD~~~~~I~~~~~dG~ 296 (395)
||+|...++|.+++++..
T Consensus 149 yv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp EEEETTTTEEEEEEEETT
T ss_pred eecccccceeEEEecccc
Confidence 999999999999998743
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-13 Score=150.29 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=133.4
Q ss_pred EecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-------------CCCCCcceEEEecCCCeE
Q psy13629 123 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-------------NGLITPDGLAIDWLTEKL 189 (395)
Q Consensus 123 ~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-------------~~~~~p~glAVD~~~~~L 189 (395)
.+...+..|.++++|..++.||++|..+++|.+++.+|. ....+.. ..+..|.||++|..++.|
T Consensus 562 ~~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred cccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE
Confidence 445677889999999999999999999999999999885 1111211 125679999999988889
Q ss_pred EEEeCCCCeEEEEECCCCceEEEEec----------------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc
Q psy13629 190 YWTDSETNKLEVSSLDGKKRKVLYWE----------------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR 253 (395)
Q Consensus 190 Ywtd~~~~~I~v~~ldg~~~~~l~~~----------------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~ 253 (395)
|++|..+++|.++++.+...+++... .+..|.+++++|.++.||++|++ ..+|.+.+..+ .
T Consensus 639 YVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-~~~I~v~d~~~--g 715 (1057)
T PLN02919 639 YVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-QHQIWEYNISD--G 715 (1057)
T ss_pred EEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-CCeEEEEECCC--C
Confidence 99999999999999988776666421 15689999999999999999965 77888888754 2
Q ss_pred ceEEEEe--------------cCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 254 HRKVIVD--------------STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 254 ~~~~lv~--------------~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
...++.. ..+..|+||+++.++++||++|..+++|.++++++..
T Consensus 716 ~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 716 VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 2222211 1356899999998888999999999999999987543
|
|
| >PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-14 Score=126.84 Aligned_cols=95 Identities=56% Similarity=0.942 Sum_probs=78.3
Q ss_pred eee-eceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCC-C-cccCCCCCCCCCC-CCCCC
Q psy13629 300 VTS-LGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG-G-ESIWGKPFEDEFK-PNYTH 375 (395)
Q Consensus 300 ~t~-~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~-~-~~~~~~~~~~e~~-~~~~~ 375 (395)
+++ .|++.++||.+.+|.+++||++||+.++|+++.|||++++++||+|++...+.. . ....+..+++|.. ..+.|
T Consensus 5 ~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~ 84 (155)
T PF00160_consen 5 ETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSLLKH 84 (155)
T ss_dssp EETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTSSSS
T ss_pred EeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCccccccccccccccc
Confidence 354 899999999999999999999999999999999999999999999998754431 1 1223446888865 34556
Q ss_pred CCCeEEEeecCC--CCCCCCCC
Q psy13629 376 TGRGVLSMANSG--PNTNTSQL 395 (395)
Q Consensus 376 ~~~G~l~ma~~~--~~~~~sqf 395 (395)
.+|+|+|++.+ +|+++|||
T Consensus 85 -~~G~v~~~~~~~~~~~~~sqF 105 (155)
T PF00160_consen 85 -RRGLVSMARSGKDPNSNGSQF 105 (155)
T ss_dssp -STTEEEEEBSSSSTTEBSSEE
T ss_pred -cceeeeecccccCCCCCCceE
Confidence 69999999986 89999998
|
It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G .... |
| >KOG1215|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=142.10 Aligned_cols=177 Identities=23% Similarity=0.377 Sum_probs=146.5
Q ss_pred EEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEE
Q psy13629 111 RIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 190 (395)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LY 190 (395)
-....++.........+.-.+.++++|+..+.+||+|.....|.+..++|+ .+.+++...+..|+.+++|+..+.+|
T Consensus 462 ~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~---~~~vl~~~~l~~~r~~~v~p~~g~~~ 538 (877)
T KOG1215|consen 462 CRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGS---SRKVLVSKDLDLPRSIAVDPEKGLMF 538 (877)
T ss_pred eeeccCCCccceEeccCccccCcEEEEeccCCceecccCCceeEEEEccCC---ceeEEEecCCCCccceeeccccCeeE
Confidence 334444433333456678889999999999999999999999999999997 56777777779999999999999999
Q ss_pred EEeCC-CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeE
Q psy13629 191 WTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGI 269 (395)
Q Consensus 191 wtd~~-~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~gl 269 (395)
|+|.. ..+|.++.+||..+.+++..+...|+|+++|-..+.+||.|......|+.++++| ..++.........|.++
T Consensus 539 wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g--~~r~~~~~~~~~~p~~~ 616 (877)
T KOG1215|consen 539 WTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDG--QNRRVVDSEDLPHPFGL 616 (877)
T ss_pred EecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCC--CceEEeccccCCCceEE
Confidence 99987 5589999999999999998889999999999999999999955444799999999 77774444556566666
Q ss_pred EEeccccEEEEeccceeeeeeeccc
Q psy13629 270 AIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 270 alD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
++ .++++||+|+....+......
T Consensus 617 ~~--~~~~iyw~d~~~~~~~~~~~~ 639 (877)
T KOG1215|consen 617 SV--FEDYIYWTDWSNRAISRAEKH 639 (877)
T ss_pred EE--ecceeEEeeccccceEeeecc
Confidence 65 589999999998877666643
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-10 Score=112.85 Aligned_cols=169 Identities=15% Similarity=0.165 Sum_probs=124.9
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCC--CCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN--VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~--~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
+...++..+.++++++.||++|.+.++|+.++++... +.....+.......|+.|++++.++.+|+++...+.|.+++
T Consensus 141 q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 141 QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence 3567899999999999999999999999999998753 22233444566688999999999999999999999999999
Q ss_pred CCC-CceEEE---Eec---C---CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc--ceEEEEecCCcCceeEEE
Q psy13629 204 LDG-KKRKVL---YWE---D---IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR--HRKVIVDSTIFWPNGIAI 271 (395)
Q Consensus 204 ldg-~~~~~l---~~~---~---~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~--~~~~lv~~~~~~P~glal 271 (395)
++. ...... +.. . ...|.+|+++|+.++||+++.+ ...|...++|.... .....+...-.+|.+|++
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 882 222111 111 1 2379999999999999999955 77888888854211 122223334567999999
Q ss_pred eccccEEEEeccceeeeeeecccc
Q psy13629 272 DFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 272 D~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
|++++.||+++...+.|.+++.|.
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEET
T ss_pred eCCCCEEEEEecCCCeEEEEEEeC
Confidence 999999999999999998887653
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-10 Score=108.60 Aligned_cols=171 Identities=20% Similarity=0.235 Sum_probs=122.1
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC-----------------------------------CceEEEE
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-----------------------------------GSKHNVI 170 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~-----------------------------------~~~~~i~ 170 (395)
....-..|-.|+++.+.|||+|...++|++.+.+.... ....+++
T Consensus 22 ~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 22 KGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLL 101 (307)
T ss_pred cccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEe
Confidence 33344566678888888888888888888887752210 0000111
Q ss_pred e-----CCCCCcceEEEecCCCeEEEEeCC-----------CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEE
Q psy13629 171 T-----NGLITPDGLAIDWLTEKLYWTDSE-----------TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFW 234 (395)
Q Consensus 171 ~-----~~~~~p~glAVD~~~~~LYwtd~~-----------~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYw 234 (395)
. ....+|+++.||+ .|.+|+++.. .+.+++++++|...+.+. ..+..|||||++|+++.||+
T Consensus 102 ~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~-~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD-DDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-CcEEecCceEECCCCCEEEE
Confidence 1 1236899999998 5899999865 246888888655554443 56999999999999999999
Q ss_pred EeeCCCCeEEEEecC---CCCcceEEEEec--CCcCceeEEEeccccEEE-Eeccceeeeeeeccccceeee
Q psy13629 235 TDWGEVPKIERGAMN---GDPRHRKVIVDS--TIFWPNGIAIDFNNRLLY-WIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 235 td~~~~~~I~~~~~d---G~~~~~~~lv~~--~~~~P~glalD~~~~rLY-waD~~~~~I~~~~~dG~~~~~ 300 (395)
+|.. ..+|++++++ |...++...+.. .-+.|.|+++| .+++|| ++-+...+|.+.+.+|....+
T Consensus 180 aDT~-~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG~l~~~ 249 (307)
T COG3386 180 ADTP-ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDGKLLGE 249 (307)
T ss_pred EeCC-CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCCCcEEEE
Confidence 9944 7899999998 554455434443 35799999999 667777 555555699999999877665
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-08 Score=97.87 Aligned_cols=167 Identities=14% Similarity=0.148 Sum_probs=119.6
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
....|.++++++.++.||.++...+.|..++++.........-.......|.++++++.++.+|.++...++|.+++++.
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 34578999999999999999988899988888632110111111234467999999999999999999999999999975
Q ss_pred CceE------EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEE--e---c---CCcCceeEEEe
Q psy13629 207 KKRK------VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIV--D---S---TIFWPNGIAID 272 (395)
Q Consensus 207 ~~~~------~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv--~---~---~~~~P~glalD 272 (395)
.... ..-......|++++++|..++||+++.. ...|...+++......+.+. . . .-.+|.+++++
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 3211 1111345779999999999999999954 57788888762101111111 1 1 12356679999
Q ss_pred ccccEEEEeccceeeeeeeccc
Q psy13629 273 FNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 273 ~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+++++||+++...+.|..++++
T Consensus 237 pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 237 PDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred CCCCEEEEecCCCCeEEEEEEe
Confidence 9999999999888999888774
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-08 Score=98.50 Aligned_cols=183 Identities=11% Similarity=0.063 Sum_probs=127.2
Q ss_pred EEEEeeCCCCCc--cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEE-EeCCCCCcceEEEecC
Q psy13629 109 DIRIANLSRPLK--PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV-ITNGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~~~--~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i-~~~~~~~p~glAVD~~ 185 (395)
.|..++++.... .....+..+.+..|+++++++.||++....+.|..+++++.. ....+ .......|.+|++++.
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g--~l~~~~~~~~~~~p~~i~~~~~ 90 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG--ALTFAAESPLPGSPTHISTDHQ 90 (330)
T ss_pred CEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC--ceEEeeeecCCCCceEEEECCC
Confidence 466666642122 223334456788999999999999998888889888876321 11111 1122347999999999
Q ss_pred CCeEEEEeCCCCeEEEEECCC--CceEEEE-ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce----EEE
Q psy13629 186 TEKLYWTDSETNKLEVSSLDG--KKRKVLY-WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR----KVI 258 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg--~~~~~l~-~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~----~~l 258 (395)
++.||.++...+.|.+++++. ...+.+- ......|.+++++|.++++|+++.+ ..+|...+++....-. ...
T Consensus 91 g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-~~~v~v~d~~~~g~l~~~~~~~~ 169 (330)
T PRK11028 91 GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-EDRIRLFTLSDDGHLVAQEPAEV 169 (330)
T ss_pred CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-CCEEEEEEECCCCcccccCCCce
Confidence 999999998889999998863 2211111 1345679999999999999999965 6778888886411110 001
Q ss_pred EecCCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 259 VDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 259 v~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
-...-..|+++++++++++||+++...+.|...+++
T Consensus 170 ~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 170 TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred ecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 111123699999999999999999989999988886
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.5e-08 Score=96.30 Aligned_cols=184 Identities=15% Similarity=0.189 Sum_probs=129.9
Q ss_pred EEEEeeCCC-CCccE--EecCCCCCeEEEEEEcCCCEEEEEEC---CCCeEEEEEccCC--CCCceEEEEeCCCCCcceE
Q psy13629 109 DIRIANLSR-PLKPV--TIIKDLEEGAAIDYYYKKSMVCWTDH---GTEMISCCTFDGN--NVGSKHNVITNGLITPDGL 180 (395)
Q Consensus 109 ~I~~~~l~~-~~~~~--~~~~~~~~~~gl~~d~~~~~lywsd~---~~~~I~~~~~dg~--~~~~~~~i~~~~~~~p~gl 180 (395)
.|..++++. ..... .......+|..|++|+.++.||.++. ..+.|..+.++.. .+..... .......|..|
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~-~~~~g~~p~~i 92 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS-VPSGGSSPCHI 92 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE-EEESSSCEEEE
T ss_pred cEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee-eccCCCCcEEE
Confidence 455555533 13332 22446788999999999999999997 4678888877753 2211111 22256789999
Q ss_pred EEecCCCeEEEEeCCCCeEEEEECCCCce--EE--EEe----------cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEE
Q psy13629 181 AIDWLTEKLYWTDSETNKLEVSSLDGKKR--KV--LYW----------EDIDQPRAIALVPQDSIMFWTDWGEVPKIERG 246 (395)
Q Consensus 181 AVD~~~~~LYwtd~~~~~I~v~~ldg~~~--~~--l~~----------~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~ 246 (395)
++|+.++.||+++...+.|.+++++.... .. ++. ....+|..+.++|++++||++|.+ ..+|...
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-~D~v~~~ 171 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-ADRVYVY 171 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-TTEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-CCEEEEE
Confidence 99999999999999999999999876422 22 221 235789999999999999999976 7889999
Q ss_pred ecCCCCcce---EEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 247 AMNGDPRHR---KVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 247 ~~dG~~~~~---~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+++.....- ..+.-..-..|..|+++++++++|+++...+.|.+++++
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 998631111 112122345799999999999999999999999999887
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-08 Score=99.39 Aligned_cols=184 Identities=16% Similarity=0.126 Sum_probs=139.6
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC--CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH--GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~--~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
+.|.+++... .........-..|.++++++.++.+|++|. .+++|..++..... ..........|.++++|+.
T Consensus 96 ~~v~vid~~~-~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~----~~~~~~vG~~P~~~a~~p~ 170 (381)
T COG3391 96 NTVSVIDTAT-NTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK----VTATIPVGNTPTGVAVDPD 170 (381)
T ss_pred CeEEEEcCcc-cceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe----EEEEEecCCCcceEEECCC
Confidence 3677788655 444444444448999999999999999998 46899999888652 1111222337899999999
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEE-----EEecCCCCceeEEEeCCCCeEEEEeeCC-CCeEEEEecCCCCcceEE--
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKV-----LYWEDIDQPRAIALVPQDSIMFWTDWGE-VPKIERGAMNGDPRHRKV-- 257 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~-----l~~~~~~~P~~iavdp~~g~LYwtd~~~-~~~I~~~~~dG~~~~~~~-- 257 (395)
+.++|.++...+.|.+.+.++..... .+ .....|.+++++|...++|+++... ...+.+.+... .....
T Consensus 171 g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~--~~v~~~~ 247 (381)
T COG3391 171 GNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT--GNVTATD 247 (381)
T ss_pred CCeEEEEecCCCeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC--ceEEEec
Confidence 99999999999999999988876553 12 4578999999999999999999652 25787777765 22222
Q ss_pred EEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 258 IVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 258 lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
...... +|.++++++.++.+|+++...+.++.++.....+..
T Consensus 248 ~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 248 LPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred cccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 222334 799999999999999999888999999887765554
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-09 Score=72.15 Aligned_cols=42 Identities=36% Similarity=0.955 Sum_probs=38.4
Q ss_pred CeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEec
Q psy13629 230 SIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDF 273 (395)
Q Consensus 230 g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~ 273 (395)
++||||||+..++|+++++|| +++++++..++.+|.|||+|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dG--s~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDG--SNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTS--TSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCC--CCeEEEEECCCCCcCEEEECC
Confidence 589999988556999999999 889999999999999999994
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-07 Score=94.40 Aligned_cols=182 Identities=16% Similarity=0.176 Sum_probs=135.1
Q ss_pred EEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeE
Q psy13629 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKL 189 (395)
Q Consensus 110 I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~L 189 (395)
+.+++..+ ............|.++++++.+.++|+++...+.+..++.. .. ........+...|.+++++..+.++
T Consensus 13 ~~v~~~~~-~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n--~~~~~~~~g~~~p~~i~v~~~~~~v 88 (381)
T COG3391 13 VSVINTGT-NKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SN--TVTQSLSVGGVYPAGVAVNPAGNKV 88 (381)
T ss_pred eEEEeecc-cEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccc-cc--eeeeeccCCCccccceeeCCCCCeE
Confidence 44444433 44555555556899999999999999999877766655554 21 1122222333789999999999999
Q ss_pred EEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 190 YWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 190 Ywtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
|.++...+.|.+.+.+.......+ .-...|.+++++|..+.+|+++.+ ....|..++-+......++.+. ..|.+
T Consensus 89 yv~~~~~~~v~vid~~~~~~~~~~-~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG---~~P~~ 164 (381)
T COG3391 89 YVTTGDSNTVSVIDTATNTVLGSI-PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG---NTPTG 164 (381)
T ss_pred EEecCCCCeEEEEcCcccceeeEe-eeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC---CCcce
Confidence 999999999999997776665444 233499999999999999999975 4788988888762222222222 25999
Q ss_pred EEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
+++|+.++++|++|...++|..++..+....
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 9999999999999999999999998776555
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-07 Score=88.23 Aligned_cols=166 Identities=13% Similarity=0.139 Sum_probs=124.1
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 207 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~ 207 (395)
..++....+++.++.|+..|.+..+|..++++.+.+.............|+.|++.+..+..|....-+++|.++..++.
T Consensus 144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 33477888999999999999999999999998655433333334566789999999999999999999999999998874
Q ss_pred c--eEEE--Ee------cCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEE---ecCCcCceeEEEec
Q psy13629 208 K--RKVL--YW------EDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIV---DSTIFWPNGIAIDF 273 (395)
Q Consensus 208 ~--~~~l--~~------~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv---~~~~~~P~glalD~ 273 (395)
. .+.+ +. .+-.+-.+|.++++.++||.++.+ +.-.+++++.+| +...++ .++.++|.++.++.
T Consensus 224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~---g~L~~~~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG---GKLELVGITPTEGQFPRDFNINP 300 (346)
T ss_pred CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC---CEEEEEEEeccCCcCCccceeCC
Confidence 1 1111 11 124566789999999999999966 333445555555 222232 34566899999999
Q ss_pred cccEEEEeccceeeeeeeccccc
Q psy13629 274 NNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 274 ~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
.++.|+.+..+++.|.+...|..
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcCC
Confidence 99999999998888876665543
|
|
| >PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells | Back alignment and domain information |
|---|
Probab=98.90 E-value=7e-09 Score=69.42 Aligned_cols=41 Identities=34% Similarity=0.671 Sum_probs=39.2
Q ss_pred CeEEEEeCCCC-eEEEEECCCCceEEEEecCCCCceeEEEeC
Q psy13629 187 EKLYWTDSETN-KLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227 (395)
Q Consensus 187 ~~LYwtd~~~~-~I~v~~ldg~~~~~l~~~~~~~P~~iavdp 227 (395)
++|||||...+ +|.+++++|+.+++++.+++.+|+|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 68999999999 999999999999999999999999999996
|
The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A .... |
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.3e-08 Score=104.30 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=117.9
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCc---ceEEEecCCCeEEEEeCCCCeEEEEE-C
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP---DGLAIDWLTEKLYWTDSETNKLEVSS-L 204 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p---~glAVD~~~~~LYwtd~~~~~I~v~~-l 204 (395)
-.|+++++-+++ .||+.| -+-|.|+..+|. ..+++.-+...| --||||++.|.||++|....+|.+.. +
T Consensus 365 ~aPvala~a~DG-Sl~VGD--fNyIRRI~~dg~----v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl 437 (1899)
T KOG4659|consen 365 FAPVALAYAPDG-SLIVGD--FNYIRRISQDGQ----VSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSL 437 (1899)
T ss_pred eceeeEEEcCCC-cEEEcc--chheeeecCCCc----eEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccC
Confidence 368999998765 588877 468999999995 455555444444 46999999999999999988887764 4
Q ss_pred CCCc----eEEEEe--------------------cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe
Q psy13629 205 DGKK----RKVLYW--------------------EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 205 dg~~----~~~l~~--------------------~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
.++. -+++.. ..+..|+||++|. .|.||++| ..+|..++-+| .-. +++.
T Consensus 438 ~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYfaD---~t~IR~iD~~g--iIs-tlig 510 (1899)
T KOG4659|consen 438 EPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYFAD---GTRIRVIDTTG--IIS-TLIG 510 (1899)
T ss_pred CccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEEec---ccEEEEeccCc--eEE-Eecc
Confidence 3321 112211 1367899999995 88999999 67899999888 333 2322
Q ss_pred c-------------------CCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 261 S-------------------TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 261 ~-------------------~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
+ .+.||..||+|+..+.||+.| +|.|.+++.++..+..
T Consensus 511 ~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~Ii 567 (1899)
T KOG4659|consen 511 TTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVRII 567 (1899)
T ss_pred CCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEEEE
Confidence 2 367999999999999999999 7899999999988865
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-07 Score=92.86 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=110.7
Q ss_pred cEEecC--CCCCeEEEEEEcCCCEEEEEECC-----------C-CeEEEEEc-cCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 121 PVTIIK--DLEEGAAIDYYYKKSMVCWTDHG-----------T-EMISCCTF-DGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 121 ~~~~~~--~~~~~~gl~~d~~~~~lywsd~~-----------~-~~I~~~~~-dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.++++. .+.+|.+|++|.. ++||+++.. . ++|.+..- |+.......+++..++..|+||+++.
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~- 81 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV- 81 (367)
T ss_pred EEEEECCCccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-
Confidence 344444 4899999999976 558998742 2 37887764 33222234567778899999999986
Q ss_pred CCeEEEEeCCCCeEEEE-ECCCC-----ceEEEEecC-------CCCceeEEEeCCCCeEEEEeeCC-------------
Q psy13629 186 TEKLYWTDSETNKLEVS-SLDGK-----KRKVLYWED-------IDQPRAIALVPQDSIMFWTDWGE------------- 239 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~-~ldg~-----~~~~l~~~~-------~~~P~~iavdp~~g~LYwtd~~~------------- 239 (395)
++ ||+++. ..|.++ +.+|. .+++++..- ...+++++++| .|+||+++-..
T Consensus 82 ~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 82 GG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred CC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccC
Confidence 45 999974 467777 55542 344554311 24488999998 57999988410
Q ss_pred -----CCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeee
Q psy13629 240 -----VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVM 291 (395)
Q Consensus 240 -----~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~ 291 (395)
...|.|++.+| +..+ ++...+..|+||++|. .++||++|........+
T Consensus 158 ~~~~~~g~i~r~~pdg--~~~e-~~a~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i 210 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDG--GKLR-VVAHGFQNPYGHSVDS-WGDVFFCDNDDPPLCRV 210 (367)
T ss_pred cccccCceEEEEecCC--CeEE-EEecCcCCCccceECC-CCCEEEEccCCCceeEE
Confidence 14699999998 4544 4566789999999996 67899998754443333
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=96.43 Aligned_cols=149 Identities=20% Similarity=0.225 Sum_probs=114.2
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC----CCCCcceEEEecCCCeEEEEeC------
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN----GLITPDGLAIDWLTEKLYWTDS------ 194 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~----~~~~p~glAVD~~~~~LYwtd~------ 194 (395)
.+.-++|.||+|+..++.||++|..- -++.++..|.. .+.+... .+.-.+++.||. ++.+||||+
T Consensus 111 e~~CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~---a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 111 EPLCGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGL---AELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDR 185 (376)
T ss_pred ccccCCcceEEeccCCCeEEEEecce-eeEEECCCCCc---ceeccccccCeeeeecCceeEcC-CCeEEEeccccccch
Confidence 34458999999999999999999654 46777777752 2222222 335688999999 999999993
Q ss_pred -----------CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce-EEEEecC
Q psy13629 195 -----------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR-KVIVDST 262 (395)
Q Consensus 195 -----------~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~-~~lv~~~ 262 (395)
.++++.++|...+..+++. +++.-|+||+++|+..++-+++.+ ..+|.|..+.|..... +++++.-
T Consensus 186 rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~sfvl~~Et~-~~ri~rywi~g~k~gt~EvFa~~L 263 (376)
T KOG1520|consen 186 RDFVFAALEGDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDGSFVLVAETT-TARIKRYWIKGPKAGTSEVFAEGL 263 (376)
T ss_pred hheEEeeecCCCccceEEecCcccchhhhh-hcccccccccCCCCCCEEEEEeec-cceeeeeEecCCccCchhhHhhcC
Confidence 3567888888888887887 889999999999999999999944 7899999999943322 5555545
Q ss_pred CcCceeEEEeccccEEEEec
Q psy13629 263 IFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD 282 (395)
-+.|..|..|..++ ||.-
T Consensus 264 PG~PDNIR~~~~G~--fWVa 281 (376)
T KOG1520|consen 264 PGYPDNIRRDSTGH--FWVA 281 (376)
T ss_pred CCCCcceeECCCCC--EEEE
Confidence 67899999994444 5654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.7e-06 Score=78.01 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=120.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+.+++++. .+..........+.++++++.++.+|.+....+.|..++.++.. ....+ .....+..+++++.++.
T Consensus 12 ~v~~~d~~t-~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~~ 86 (300)
T TIGR03866 12 TISVIDTAT-LEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VIGTL-PSGPDPELFALHPNGKI 86 (300)
T ss_pred EEEEEECCC-CceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc---EEEec-cCCCCccEEEECCCCCE
Confidence 567777765 33333334445678899999999999998788899999987642 11112 22345788999998888
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
+|.+....+.|.+.++........+ .....|.+++++|.+..++.+. .....+...+.+. ........ .-..|..
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~dg~~l~~~~-~~~~~~~~~d~~~--~~~~~~~~-~~~~~~~ 161 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEI-PVGVEPEGMAVSPDGKIVVNTS-ETTNMAHFIDTKT--YEIVDNVL-VDQRPRF 161 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEe-eCCCCcceEEECCCCCEEEEEe-cCCCeEEEEeCCC--CeEEEEEE-cCCCccE
Confidence 9988877789999999875443333 3345689999999887777765 3233455556554 11111111 1235888
Q ss_pred EEEeccccEEEEeccceeeeeeeccccce
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
++++.+++.||++....+.|...++....
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 99998888888876666788888876543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1520|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.5e-07 Score=85.75 Aligned_cols=204 Identities=15% Similarity=0.198 Sum_probs=134.3
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC-Cce----EEEEeCCCCCcceEEEecCCCeEEEEeCCCCeE
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-GSK----HNVITNGLITPDGLAIDWLTEKLYWTDSETNKL 199 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~-~~~----~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I 199 (395)
......+--+.++ +++.|+|+....+.|-++....+.. ... ..-......+|-|||.|..++.||++|...+ +
T Consensus 61 fd~~~~gp~~~v~-dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlG-L 138 (376)
T KOG1520|consen 61 FDPQGGGPYTGVV-DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLG-L 138 (376)
T ss_pred ecccCCCceEEEE-CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEeccee-e
Confidence 3333333334443 4677899987788887777632110 000 1122234589999999999999999997655 7
Q ss_pred EEEECCCCceEEEEecC----CCCceeEEEeCCCCeEEEEeeCC---CCeEEEEecCCCCcceEE----------EEecC
Q psy13629 200 EVSSLDGKKRKVLYWED----IDQPRAIALVPQDSIMFWTDWGE---VPKIERGAMNGDPRHRKV----------IVDST 262 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~~----~~~P~~iavdp~~g~LYwtd~~~---~~~I~~~~~dG~~~~~~~----------lv~~~ 262 (395)
.+.++.|+..+.+..+. +.-.+++.|++ +|.+||||.+. ...+.-+-+.|..+.|-. ++-++
T Consensus 139 ~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~ 217 (376)
T KOG1520|consen 139 LKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDG 217 (376)
T ss_pred EEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhc
Confidence 78888887755554332 45568999999 99999999652 123444444443333322 23346
Q ss_pred CcCceeEEEeccccEEEEeccceeeeeeeccccceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEE
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHR 338 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r 338 (395)
+..|||+++..++..+.+++....+|.+.-+.|...- ..++|.+..|+-.+|...-.+++||=....+|
T Consensus 218 L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~g-------t~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~ 286 (376)
T KOG1520|consen 218 LYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAG-------TSEVFAEGLPGYPDNIRRDSTGHFWVALHSKR 286 (376)
T ss_pred ccccccccCCCCCCEEEEEeeccceeeeeEecCCccC-------chhhHhhcCCCCCcceeECCCCCEEEEEeccc
Confidence 8899999999999999999988888877666654332 22777777788888887776666665544333
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-05 Score=75.07 Aligned_cols=183 Identities=13% Similarity=0.021 Sum_probs=123.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+++++.. .......+....+.++++++.++.++.+......+..++.+.. ...... .....|..+++++.++.
T Consensus 96 ~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~---~~~~~~-~~~~~~~~~~~s~dg~~ 170 (300)
T TIGR03866 96 LVTVIDIET-RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY---EIVDNV-LVDQRPRFAEFTADGKE 170 (300)
T ss_pred eEEEEECCC-CeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC---eEEEEE-EcCCCccEEEECCCCCE
Confidence 577778765 3333333333457889999998888877655556666666543 111111 12346889999998888
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEe-c------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYW-E------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~-~------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
||++....+.|.+.++........+. . ....|.+++++|..+++|++. +...+|...+++.. .....+..
T Consensus 171 l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~-~~~~~i~v~d~~~~-~~~~~~~~- 247 (300)
T TIGR03866 171 LWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL-GPANRVAVVDAKTY-EVLDYLLV- 247 (300)
T ss_pred EEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc-CCCCeEEEEECCCC-cEEEEEEe-
Confidence 88876667899999998654432221 1 123578999999999999886 33567888887641 22222221
Q ss_pred CCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
-..|.++++++.+++||.+....+.|.+.+.++...+.
T Consensus 248 -~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 248 -GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred -CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 23688999999999999998778889999988766544
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.4e-07 Score=95.79 Aligned_cols=179 Identities=18% Similarity=0.243 Sum_probs=124.1
Q ss_pred EEEEeeCCCCCc--cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEE-ccCCCC-CceEEEEe-------------
Q psy13629 109 DIRIANLSRPLK--PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCT-FDGNNV-GSKHNVIT------------- 171 (395)
Q Consensus 109 ~I~~~~l~~~~~--~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~-~dg~~~-~~~~~i~~------------- 171 (395)
=||++..+|... .++-.....+-+=||.||..+.||++|...++|+|+. +.+... .+.+++.-
T Consensus 385 yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCG 464 (1899)
T KOG4659|consen 385 YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCG 464 (1899)
T ss_pred heeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccC
Confidence 578888887322 1222345667788999999999999999999999975 333221 12333332
Q ss_pred -------CCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEe------------------cCCCCceeEEEe
Q psy13629 172 -------NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW------------------EDIDQPRAIALV 226 (395)
Q Consensus 172 -------~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~------------------~~~~~P~~iavd 226 (395)
..+..|.|||||. .|+|||+|. -.|.+.|-+|-....+-. -.+.+|..|||+
T Consensus 465 DGalA~dA~L~~PkGIa~dk-~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~ 541 (1899)
T KOG4659|consen 465 DGALAQDAQLIFPKGIAFDK-MGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVD 541 (1899)
T ss_pred cchhcccceeccCCceeEcc-CCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeec
Confidence 1357899999995 899999996 468888887754433221 137899999999
Q ss_pred CCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec--------------------CCcCceeEEEeccccEEEEeccce-
Q psy13629 227 PQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS--------------------TIFWPNGIAIDFNNRLLYWIDGRL- 285 (395)
Q Consensus 227 p~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~--------------------~~~~P~glalD~~~~rLYwaD~~~- 285 (395)
|..+-||+-| .+-|.++..++ ..+ ++... .+..|..|++. ..|-||+++...
T Consensus 542 Pmdnsl~Vld---~nvvlrit~~~--rV~-Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~~G~lyvaEsD~r 614 (1899)
T KOG4659|consen 542 PMDNSLLVLD---TNVVLRITVVH--RVR-IILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-TDGALYVAESDGR 614 (1899)
T ss_pred CCCCeEEEee---cceEEEEccCc--cEE-EEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-CCceEEEEeccch
Confidence 9999999999 67888888887 222 33322 12346778888 457899998655
Q ss_pred --eeeeeeccccce
Q psy13629 286 --TFIEVMDYDGYV 297 (395)
Q Consensus 286 --~~I~~~~~dG~~ 297 (395)
|+|..+..||..
T Consensus 615 riNrvr~~~tdg~i 628 (1899)
T KOG4659|consen 615 RINRVRKLSTDGTI 628 (1899)
T ss_pred hhhheEEeccCceE
Confidence 455566666643
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-05 Score=72.85 Aligned_cols=168 Identities=13% Similarity=0.096 Sum_probs=109.3
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
....+.||+|+++++.||...-....|+..+++|. -.+.+...+...++||++- .++.+..++...+++.++.++.
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~---vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK---VLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE--
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC---EEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEec
Confidence 45569999999999999999888999999999885 4566767788999999995 3556666777788898888733
Q ss_pred --Cce--EE--EEe---c--CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEec--CCCCcceEEEEec-------CCcCc
Q psy13629 207 --KKR--KV--LYW---E--DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM--NGDPRHRKVIVDS-------TIFWP 266 (395)
Q Consensus 207 --~~~--~~--l~~---~--~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~--dG~~~~~~~lv~~-------~~~~P 266 (395)
... .. -+. . .-.---|||.|+.++.||+..-....+|+.++. .+ ......... ....|
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG--FDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S--S--EEEE-HHHH-HT--SS--
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc--cceeeccccccccccceeccc
Confidence 211 11 111 1 112257999999999999987443446777776 22 222222111 24569
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
.++++|+..+.||+....+.+|..++.+|.....
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~ 207 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELDRQGRVVSS 207 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE-TT--EEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEECCCCCEEEE
Confidence 9999999999999999999999999999986654
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.8e-06 Score=82.62 Aligned_cols=166 Identities=18% Similarity=0.132 Sum_probs=109.8
Q ss_pred cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEE-ccCCCC-C-ceEEEEeCC-------CCCcceEEEecCCCeEE
Q psy13629 121 PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCT-FDGNNV-G-SKHNVITNG-------LITPDGLAIDWLTEKLY 190 (395)
Q Consensus 121 ~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~-~dg~~~-~-~~~~i~~~~-------~~~p~glAVD~~~~~LY 190 (395)
.+.++..+..+.||++...+ ||+++ ...|.++. .++... . .+++++..- ...++++++++ .++||
T Consensus 64 ~~vfa~~l~~p~Gi~~~~~G--lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LY 138 (367)
T TIGR02604 64 SNVFAEELSMVTGLAVAVGG--VYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLY 138 (367)
T ss_pred eEEeecCCCCccceeEecCC--EEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEE
Confidence 46778889999999998655 99986 34688774 443211 1 233343321 23488999997 68999
Q ss_pred EEeCCC-------------------CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC--
Q psy13629 191 WTDSET-------------------NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN-- 249 (395)
Q Consensus 191 wtd~~~-------------------~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d-- 249 (395)
+++... +.|.+++++|...+++. ..+.+|+|+++|+ .|.||++|-+ .....++..-
T Consensus 139 v~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a-~G~rnp~Gl~~d~-~G~l~~tdn~-~~~~~~i~~~~~ 215 (367)
T TIGR02604 139 FNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA-HGFQNPYGHSVDS-WGDVFFCDND-DPPLCRVTPVAE 215 (367)
T ss_pred EecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEe-cCcCCCccceECC-CCCEEEEccC-CCceeEEccccc
Confidence 988621 57999999998876654 7899999999998 6889999843 2222222210
Q ss_pred ----------CC-----C--cceEE-----------EE-----ecCCcCceeEEEe-------ccccEEEEeccceeeee
Q psy13629 250 ----------GD-----P--RHRKV-----------IV-----DSTIFWPNGIAID-------FNNRLLYWIDGRLTFIE 289 (395)
Q Consensus 250 ----------G~-----~--~~~~~-----------lv-----~~~~~~P~glalD-------~~~~rLYwaD~~~~~I~ 289 (395)
|. . ...+. ++ -.....|.|+++- ...+.++++++..++|.
T Consensus 216 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~ 295 (367)
T TIGR02604 216 GGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIV 295 (367)
T ss_pred ccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEE
Confidence 00 0 00000 00 0011268999986 34578999999999998
Q ss_pred eeccc
Q psy13629 290 VMDYD 294 (395)
Q Consensus 290 ~~~~d 294 (395)
++.++
T Consensus 296 ~~~l~ 300 (367)
T TIGR02604 296 RYSLE 300 (367)
T ss_pred EEEee
Confidence 88876
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.6e-06 Score=78.53 Aligned_cols=148 Identities=22% Similarity=0.271 Sum_probs=105.8
Q ss_pred CCeEEEEEEcCCCEEEEEECC-----------CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCC
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHG-----------TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETN 197 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~-----------~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~ 197 (395)
.+++-...++. +.+|+++.. .+.++|++.+|. ...++...+..|+|||+++.+..||++|...+
T Consensus 111 ~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~----~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 111 NRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG----VVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCC----EEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 46677778876 568888876 246899988663 45666666999999999999999999999999
Q ss_pred eEEEEECC---C----CceEEEEecCCCCceeEEEeCCCCeEE-EEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeE
Q psy13629 198 KLEVSSLD---G----KKRKVLYWEDIDQPRAIALVPQDSIMF-WTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGI 269 (395)
Q Consensus 198 ~I~v~~ld---g----~~~~~l~~~~~~~P~~iavdp~~g~LY-wtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~gl 269 (395)
+|.+++++ | +...+.....-..|-|+++|. +|.|| ++-|+ ..+|.+.+.+| .....+ .--..+|...
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~-g~~v~~~~pdG--~l~~~i-~lP~~~~t~~ 260 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWG-GGRVVRFNPDG--KLLGEI-KLPVKRPTNP 260 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccC-CceEEEECCCC--cEEEEE-ECCCCCCccc
Confidence 99999988 2 211233323457899999995 67777 44444 46899999998 322222 2222467777
Q ss_pred EEe-ccccEEEEecccee
Q psy13629 270 AID-FNNRLLYWIDGRLT 286 (395)
Q Consensus 270 alD-~~~~rLYwaD~~~~ 286 (395)
++- ...++||++-...+
T Consensus 261 ~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 261 AFGGPDLNTLYITSARSG 278 (307)
T ss_pred eEeCCCcCEEEEEecCCC
Confidence 765 34589999976553
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.1e-07 Score=69.99 Aligned_cols=71 Identities=30% Similarity=0.415 Sum_probs=58.3
Q ss_pred ceEEEecCCCeEEEEeC-----------------CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCC
Q psy13629 178 DGLAIDWLTEKLYWTDS-----------------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEV 240 (395)
Q Consensus 178 ~glAVD~~~~~LYwtd~-----------------~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~ 240 (395)
++|+|+..+|.|||||+ .++++.++|+.++..++++ .++..|+||++++++..|.+++.. .
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~L~fpNGVals~d~~~vlv~Et~-~ 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DGLYFPNGVALSPDESFVLVAETG-R 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EEESSEEEEEE-TTSSEEEEEEGG-G
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hCCCccCeEEEcCCCCEEEEEecc-C
Confidence 47999988899999993 4689999999999988888 779999999999999999999955 7
Q ss_pred CeEEEEecCC
Q psy13629 241 PKIERGAMNG 250 (395)
Q Consensus 241 ~~I~~~~~dG 250 (395)
.+|.|..+.|
T Consensus 79 ~Ri~rywl~G 88 (89)
T PF03088_consen 79 YRILRYWLKG 88 (89)
T ss_dssp TEEEEEESSS
T ss_pred ceEEEEEEeC
Confidence 8999999987
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.5e-06 Score=82.40 Aligned_cols=155 Identities=19% Similarity=0.133 Sum_probs=104.2
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe------CCCCCcceEEEec---CCCeEEEEeCCC--
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT------NGLITPDGLAIDW---LTEKLYWTDSET-- 196 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~------~~~~~p~glAVD~---~~~~LYwtd~~~-- 196 (395)
+.+|.+|+|.++ ++||+++. .++|+++..+|.. ...+.. ......-|||+|+ .++.||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~---~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~ 75 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSL---KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE 75 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEE---CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcC---cceecccccccccccCCcccceeccccCCCCEEEEEEEcccC
Confidence 367999999998 67899986 9999999977752 122211 2345678999998 368888876532
Q ss_pred ------CeEEEEECCCC-----ceEEEEe------cCCCCceeEEEeCCCCeEEEEeeC------------CCCeEEEEe
Q psy13629 197 ------NKLEVSSLDGK-----KRKVLYW------EDIDQPRAIALVPQDSIMFWTDWG------------EVPKIERGA 247 (395)
Q Consensus 197 ------~~I~v~~ldg~-----~~~~l~~------~~~~~P~~iavdp~~g~LYwtd~~------------~~~~I~~~~ 247 (395)
.+|.++.++.. ..++++. ...+.-.+|+++| .|+||++--. ...+|.|++
T Consensus 76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRID 154 (331)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE
T ss_pred CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEec
Confidence 57888887655 2334432 1356778899999 5599999611 136899999
Q ss_pred cCCCC----------cceEEEEecCCcCceeEEEeccccEEEEeccceeee
Q psy13629 248 MNGDP----------RHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFI 288 (395)
Q Consensus 248 ~dG~~----------~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I 288 (395)
.||+. .....++...+..|.+|++|...++||.+|...+..
T Consensus 155 ~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~ 205 (331)
T PF07995_consen 155 PDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGW 205 (331)
T ss_dssp TTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSS
T ss_pred ccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCC
Confidence 99931 012345677889999999998879999999655433
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.8e-05 Score=72.61 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=95.5
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCC--CCCce--EEEEeC----CCCCcceE
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN--NVGSK--HNVITN----GLITPDGL 180 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~--~~~~~--~~i~~~----~~~~p~gl 180 (395)
.|..++++|+--......+.+.+.||+|- .++.+..++...++++.+..+.. .+... +.+... .-..-+||
T Consensus 45 ~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGl 123 (248)
T PF06977_consen 45 EIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGL 123 (248)
T ss_dssp EEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEE
T ss_pred EEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEE
Confidence 45556665522233445567889999996 45566677767889998888432 11111 112111 22347999
Q ss_pred EEecCCCeEEEEeCCCC-eEEEEEC--CCCceEEEEe-------cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 181 AIDWLTEKLYWTDSETN-KLEVSSL--DGKKRKVLYW-------EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 181 AVD~~~~~LYwtd~~~~-~I~v~~l--dg~~~~~l~~-------~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
|.|+.++.||.+..... .|+..+. .+....+... .....|.+|++||..+.||+-. .++.+|...+.+|
T Consensus 124 a~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS-~es~~l~~~d~~G 202 (248)
T PF06977_consen 124 AYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILS-DESRLLLELDRQG 202 (248)
T ss_dssp EEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEE-TTTTEEEEE-TT-
T ss_pred EEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEE-CCCCeEEEECCCC
Confidence 99999999999864433 4666665 2222222221 1367899999999999999987 6789999999999
Q ss_pred CCcceEEEEe------cCCcCceeEEEeccccEEEEecc
Q psy13629 251 DPRHRKVIVD------STIFWPNGIAIDFNNRLLYWIDG 283 (395)
Q Consensus 251 ~~~~~~~lv~------~~~~~P~glalD~~~~rLYwaD~ 283 (395)
.......+.. ..+.+|-|||+| .+++||++..
T Consensus 203 ~~~~~~~L~~g~~gl~~~~~QpEGIa~d-~~G~LYIvsE 240 (248)
T PF06977_consen 203 RVVSSLSLDRGFHGLSKDIPQPEGIAFD-PDGNLYIVSE 240 (248)
T ss_dssp -EEEEEE-STTGGG-SS---SEEEEEE--TT--EEEEET
T ss_pred CEEEEEEeCCcccCcccccCCccEEEEC-CCCCEEEEcC
Confidence 3222223332 236789999999 5679999874
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.4e-05 Score=79.00 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=112.3
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCc---eEEEEe-CCCCCcceEEEecC------CCe
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS---KHNVIT-NGLITPDGLAIDWL------TEK 188 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~---~~~i~~-~~~~~p~glAVD~~------~~~ 188 (395)
...+.++..+..|.+|+|.+++ .+|++....++|.++..++..... ...+.. .+...+-|||+++. ++.
T Consensus 20 f~~~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~ 98 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPY 98 (454)
T ss_pred cEEEEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcE
Confidence 3456678889999999999864 788998657999998765431100 011221 24567899999954 568
Q ss_pred EEEEeC---------CCCeEEEEECCCC-----ceEEEEec----CCCCceeEEEeCCCCeEEEEeeCC-----------
Q psy13629 189 LYWTDS---------ETNKLEVSSLDGK-----KRKVLYWE----DIDQPRAIALVPQDSIMFWTDWGE----------- 239 (395)
Q Consensus 189 LYwtd~---------~~~~I~v~~ldg~-----~~~~l~~~----~~~~P~~iavdp~~g~LYwtd~~~----------- 239 (395)
||++-. ...+|.++.++.. ..++++.. ..+.-..|+++|+ |+||++- |+
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPD-G~LYVs~-GD~g~~~~~n~~~ 176 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPD-GKIYYTI-GEQGRNQGANFFL 176 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCC-CcEEEEE-CCCCCCCcccccC
Confidence 998841 2568999988632 23445532 1355678999984 6899975 31
Q ss_pred ---------------------CCeEEEEecCCCC--------cceEEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 240 ---------------------VPKIERGAMNGDP--------RHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 240 ---------------------~~~I~~~~~dG~~--------~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
..+|.|++.||+. ..+..+....+++|.||++|+ +++||.+|...
T Consensus 177 ~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp 250 (454)
T TIGR03606 177 PNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGP 250 (454)
T ss_pred cchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCC
Confidence 1279999999931 013457777889999999997 78999998654
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.9e-07 Score=59.22 Aligned_cols=41 Identities=44% Similarity=0.967 Sum_probs=37.1
Q ss_pred EEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCc
Q psy13629 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208 (395)
Q Consensus 168 ~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~ 208 (395)
.++..++..|+|||+||.+++|||+|...+.|.+++++|..
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 35566788999999999999999999999999999999975
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.7e-05 Score=71.28 Aligned_cols=186 Identities=12% Similarity=0.165 Sum_probs=133.0
Q ss_pred EEEEEeeCCC---CCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeC---CCCCcce
Q psy13629 108 LDIRIANLSR---PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITN---GLITPDG 179 (395)
Q Consensus 108 ~~I~~~~l~~---~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~---~~~~p~g 179 (395)
..|.+++++. +-.....+....+|.=|+++++++.||..... .+.|-.+..|..+ ..-+.+.. ....|.-
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~--G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD--GRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC--CeEEEeeccccCCCCCeE
Confidence 4566777663 23344566778899999999999999999866 6788888888642 12333333 2345699
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEECC--CCceEE--EEecC---------CCCceeEEEeCCCCeEEEEeeCCCCeEEEE
Q psy13629 180 LAIDWLTEKLYWTDSETNKLEVSSLD--GKKRKV--LYWED---------IDQPRAIALVPQDSIMFWTDWGEVPKIERG 246 (395)
Q Consensus 180 lAVD~~~~~LYwtd~~~~~I~v~~ld--g~~~~~--l~~~~---------~~~P~~iavdp~~g~LYwtd~~~~~~I~~~ 246 (395)
+++|..++.||.++...+.|.|+.+. |.-..+ ++... -.++...-++|++++|+.+|.| ..+|...
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-~Dri~~y 172 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-TDRIFLY 172 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-CceEEEE
Confidence 99999999999999999999998874 433322 22111 1236778899999999999988 5566555
Q ss_pred ec-CCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 247 AM-NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 247 ~~-dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
++ ||.+.......-..-..|.-|++.+.++..|....-+++|.+..+++.
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 55 453332222222334579999999999999999999999999998885
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=98.37 E-value=6e-07 Score=59.81 Aligned_cols=41 Identities=37% Similarity=0.646 Sum_probs=37.0
Q ss_pred EEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 257 VIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 257 ~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
+++...+..|+||++|+.+++|||+|...+.|++++++|..
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 35566788999999999999999999999999999999975
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0002 Score=71.06 Aligned_cols=183 Identities=14% Similarity=0.067 Sum_probs=117.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCe-EEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEG-AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~-~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.+.++|.+. .+..-..+....+ .++.+.++++.+|.++ .++.|..+++.... ....+ .....|.|+++.+.++
T Consensus 17 ~v~viD~~t-~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~---~v~~i-~~G~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 17 SVAVIDGAT-NKVVARIPTGGAPHAGLKFSPDGRYLYVAN-RDGTVSVIDLATGK---VVATI-KVGGNPRGIAVSPDGK 90 (369)
T ss_dssp EEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEE-TTSEEEEEETTSSS---EEEEE-E-SSEEEEEEE--TTT
T ss_pred EEEEEECCC-CeEEEEEcCCCCceeEEEecCCCCEEEEEc-CCCeEEEEECCccc---EEEEE-ecCCCcceEEEcCCCC
Confidence 678888766 4444444444444 5678999999999998 57899999998752 22222 2345799999999999
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecC-------CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWED-------IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~-------~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
.+|.++...+.+.+.|.........+... -..+.+|.-+|.+.. |+....+..+|..++.... ....+-.-
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~-fVv~lkd~~~I~vVdy~d~-~~~~~~~i 168 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE-FVVNLKDTGEIWVVDYSDP-KNLKVTTI 168 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-EEEEETTTTEEEEEETTTS-SCEEEEEE
T ss_pred EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-EEEEEccCCeEEEEEeccc-cccceeee
Confidence 99999999999999998765544333221 123456766665554 4444456789999987652 22221111
Q ss_pred cCCcCceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 261 STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 261 ~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
.--..|++..+|+++++++.+....+.|..++.......
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV 207 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred cccccccccccCcccceeeecccccceeEEEeeccceEE
Confidence 123479999999999999998888899999997665444
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00024 Score=69.72 Aligned_cols=114 Identities=17% Similarity=0.126 Sum_probs=78.3
Q ss_pred ecCCCeEEEEeCCCCeEEEEECCCCceEEEEe-----c----CCCCcee---EEEeCCCCeEEEEeeC--------CCCe
Q psy13629 183 DWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW-----E----DIDQPRA---IALVPQDSIMFWTDWG--------EVPK 242 (395)
Q Consensus 183 D~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~-----~----~~~~P~~---iavdp~~g~LYwtd~~--------~~~~ 242 (395)
.+.+++.+|...+ +.|.++++.+........ . ..-.|-| +++++.+++||+..-+ ....
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 3435677777766 999999987754433221 1 1224555 9999999999995312 1267
Q ss_pred EEEEecCCCCcceEEEEecCCcCceeEEEecccc-EEEEeccceeeeeeeccccceeee
Q psy13629 243 IERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR-LLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 243 I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~-rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
|..++.......+++.+. ..|.+|+++.+++ +||.++...+.|+.+|........
T Consensus 281 V~ViD~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 281 LFVVDAKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EEEEECCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 999888762222233333 3699999999999 999999999999999976554443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00051 Score=67.36 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=125.2
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC---------CCCeEEEEEccCCCCCceEEEEeC------
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH---------GTEMISCCTFDGNNVGSKHNVITN------ 172 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~---------~~~~I~~~~~dg~~~~~~~~i~~~------ 172 (395)
..|.++|.+. .++.-.++.-..|.++ ++++++.||.+.. .++.|..++..... ....+...
T Consensus 27 ~~v~ViD~~~-~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEA-GRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCC-CEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhh
Confidence 5677888877 5665666666788887 9999999999998 78899999988642 22223321
Q ss_pred CCCCcceEEEecCCCeEEEEeCC-CCeEEEEECCCCceEEEE--------------------------------------
Q psy13629 173 GLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLY-------------------------------------- 213 (395)
Q Consensus 173 ~~~~p~glAVD~~~~~LYwtd~~-~~~I~v~~ldg~~~~~l~-------------------------------------- 213 (395)
....|..+++.+.++.||+++.. .+.+.+.|+.......-+
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 13456699999999999999965 677777776543221100
Q ss_pred -ecC---------CCCceeEEEeC-CCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe---cCC----cCcee---EEEe
Q psy13629 214 -WED---------IDQPRAIALVP-QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD---STI----FWPNG---IAID 272 (395)
Q Consensus 214 -~~~---------~~~P~~iavdp-~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~---~~~----~~P~g---lalD 272 (395)
... +.+| .+.+ .++++|+|. ...|+.+++.+........+. ... -.|.| ++++
T Consensus 183 ~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~---eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~ 256 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHP---AYSNKSGRLVWPTY---TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH 256 (352)
T ss_pred eeeeeecCCccccccCC---ceEcCCCcEEEEec---CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence 000 1334 3344 444555554 378999998763222222111 111 13555 9999
Q ss_pred ccccEEEEe-ccce--------eeeeeeccccceeee-eeece-e-eeeeeecc
Q psy13629 273 FNNRLLYWI-DGRL--------TFIEVMDYDGYVRLV-TSLGH-I-NLELYCNV 314 (395)
Q Consensus 273 ~~~~rLYwa-D~~~--------~~I~~~~~dG~~~~~-t~~g~-~-~i~Lf~d~ 314 (395)
..+++||++ .... +.|+.+|.....+.. ...+. + .+++-+|.
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dg 310 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDA 310 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCC
Confidence 999999995 3333 689999987766655 23333 3 67766553
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0003 Score=67.36 Aligned_cols=161 Identities=20% Similarity=0.123 Sum_probs=101.5
Q ss_pred CeEEEEEEcCCCEEEEEECCC------------CeEEEEEccCCCCCceEEEEeC-----CCCCcceEEEecCC-----C
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGT------------EMISCCTFDGNNVGSKHNVITN-----GLITPDGLAIDWLT-----E 187 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~------------~~I~~~~~dg~~~~~~~~i~~~-----~~~~p~glAVD~~~-----~ 187 (395)
++.++..|. .++|++.|.+. -+|..+++....+ ..++... .-...++|+||... +
T Consensus 2 sV~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~l--i~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~ 78 (287)
T PF03022_consen 2 SVQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQL--IRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDG 78 (287)
T ss_dssp -EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCE--EEEEE--CCCS-TCGGEEEEEEECTTTTS-SE
T ss_pred cccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcE--EEEEECChHHcccccccceEEEEccCCCCcce
Confidence 356677774 56777777642 2677777776532 1222222 22456789999855 4
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEec-------------------CCCCceeEEEeC---CCCeEEEEeeCCCCeEEE
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWE-------------------DIDQPRAIALVP---QDSIMFWTDWGEVPKIER 245 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~-------------------~~~~P~~iavdp---~~g~LYwtd~~~~~~I~~ 245 (395)
.+|.+|.....|.|+|+.......+... ......|++++| .++.|||.-.. ..++++
T Consensus 79 ~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-s~~ly~ 157 (287)
T PF03022_consen 79 FAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-SRKLYR 157 (287)
T ss_dssp EEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEE
T ss_pred EEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-CCcEEE
Confidence 8999999999999999987543333311 012357788877 55689999854 567888
Q ss_pred Eec----CCCCcceE------EEEecCCcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 246 GAM----NGDPRHRK------VIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 246 ~~~----dG~~~~~~------~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
+.. +....... ..+........|+++|. ++.||+++...+.|.+.+.++
T Consensus 158 v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 158 VPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEETTT
T ss_pred EEHHHhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCC
Confidence 776 22111111 23333234678999994 899999999999999999998
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00053 Score=69.51 Aligned_cols=185 Identities=11% Similarity=0.081 Sum_probs=122.1
Q ss_pred ceeEEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC--CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEE
Q psy13629 105 AYLLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH--GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAI 182 (395)
Q Consensus 105 ~~~~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~--~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAV 182 (395)
.+..+|.+++.++ .+...+..........+|++++++|.++.. ....|+..++++. ..+.+. .........++
T Consensus 176 ~~~~~l~~~d~dg-~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G---~~~~l~-~~~~~~~~~~~ 250 (429)
T PRK03629 176 QFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AVRQVA-SFPRHNGAPAF 250 (429)
T ss_pred CcceeEEEEcCCC-CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---CeEEcc-CCCCCcCCeEE
Confidence 4456888899988 444445555566788999999998887643 3457888888865 223332 21222345788
Q ss_pred ecCCCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEE-EEeeCCCCeEEEEecCCCCcceEEEE
Q psy13629 183 DWLTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMF-WTDWGEVPKIERGAMNGDPRHRKVIV 259 (395)
Q Consensus 183 D~~~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LY-wtd~~~~~~I~~~~~dG~~~~~~~lv 259 (395)
.+.++.|+++.. +...|++.++++...+.+. .........+.+|+++.|+ .++.+...+|++.+++| ...+.+.
T Consensus 251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~--g~~~~lt 327 (429)
T PRK03629 251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING--GAPQRIT 327 (429)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC--CCeEEee
Confidence 888889998743 3347999999987776665 3334566788999988774 45544567899999988 3444343
Q ss_pred ecCCcCceeEEEeccccEEEEeccc--eeeeeeecccccee
Q psy13629 260 DSTIFWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVR 298 (395)
Q Consensus 260 ~~~~~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~ 298 (395)
.. ........+.++++.|+++... ...|..+++++...
T Consensus 328 ~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 328 WE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred cC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 22 2233456778788888776533 24567777765543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00036 Score=71.13 Aligned_cols=183 Identities=11% Similarity=0.018 Sum_probs=118.8
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.+|.+++.++ .+...+...........|++++++|+|+... ...|+..++++. ....+. .........+..+.
T Consensus 198 ~~l~i~d~dG-~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg---~~~~lt-~~~g~~~~~~wSPD 272 (448)
T PRK04792 198 YQLMIADYDG-YNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ---VREKVT-SFPGINGAPRFSPD 272 (448)
T ss_pred eEEEEEeCCC-CCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC---CeEEec-CCCCCcCCeeECCC
Confidence 3566677777 4444455555556678999999999887543 346999998875 222232 21122345788888
Q ss_pred CCeEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEee-CCCCeEEEEecCCCCcceEEEEecC
Q psy13629 186 TEKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW-GEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 186 ~~~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~-~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
++.|+++... ...|++.++++...+.+. .........+.+|++++|+++.. +....|++.++++ ...+.+...
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~~lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~--g~~~~Lt~~- 348 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALTRIT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS--GKVSRLTFE- 348 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeEECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEEecC-
Confidence 8889886433 346999999987766554 33334566789999888877643 3467899999986 333333222
Q ss_pred CcCceeEEEeccccEEEEeccc--eeeeeeeccccceee
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVRL 299 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~~ 299 (395)
..+..+.+++++++.||++... ...|..+++++....
T Consensus 349 g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 349 GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 1233456788888899887543 346777887765543
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0001 Score=66.90 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=65.5
Q ss_pred cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe--cC-CCCcceEEEEec------CCcCceeEEEeccccEEEEeccce
Q psy13629 215 EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA--MN-GDPRHRKVIVDS------TIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 215 ~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~--~d-G~~~~~~~lv~~------~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
..+.-|+||+-|.+.+.+|++| .-+..|...+ .. |..++++.++.- +-..|.||+|| .++.||++..+.
T Consensus 155 ~~v~IsNgl~Wd~d~K~fY~iD-sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-~eG~L~Va~~ng 232 (310)
T KOG4499|consen 155 NCVGISNGLAWDSDAKKFYYID-SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-TEGNLYVATFNG 232 (310)
T ss_pred hhccCCccccccccCcEEEEEc-cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-cCCcEEEEEecC
Confidence 5677899999999999999999 4466674444 43 445788887763 24579999999 689999999999
Q ss_pred eeeeeeccccceeee
Q psy13629 286 TFIEVMDYDGYVRLV 300 (395)
Q Consensus 286 ~~I~~~~~dG~~~~~ 300 (395)
.+|..+++....+..
T Consensus 233 ~~V~~~dp~tGK~L~ 247 (310)
T KOG4499|consen 233 GTVQKVDPTTGKILL 247 (310)
T ss_pred cEEEEECCCCCcEEE
Confidence 999999976555543
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00012 Score=66.41 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=85.2
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEE--ccCCCCCceEEEEeC------CCCCcceEEEecCCCeEE
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCT--FDGNNVGSKHNVITN------GLITPDGLAIDWLTEKLY 190 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~--~dg~~~~~~~~i~~~------~~~~p~glAVD~~~~~LY 190 (395)
.+...+.....-++||+||.+.++.|+.|..+-.|-.++ ..+..++++..++.- ....|.|++||- .|+||
T Consensus 148 h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~ 226 (310)
T KOG4499|consen 148 HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLY 226 (310)
T ss_pred CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEE
Confidence 566777777888999999999999999999888996555 555555566655542 234699999996 99999
Q ss_pred EEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeC-CCCeEEEEe
Q psy13629 191 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP-QDSIMFWTD 236 (395)
Q Consensus 191 wtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp-~~g~LYwtd 236 (395)
++....++|++.|+....+..-+.-...+...+++-- .-..||+|.
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 9999999999999876554422222344555666542 234678776
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00059 Score=69.25 Aligned_cols=182 Identities=15% Similarity=0.140 Sum_probs=119.4
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
..|.++|.++ .+...+........+.+|++++++|+++... ...|++.++++. ....+. .........++.+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g---~~~~l~-~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG---QRELVA-SFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC---CEEEec-cCCCCccCceECCC
Confidence 4677788877 4444455555567788999999999988643 346999999875 233332 21122346788888
Q ss_pred CCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEE-eeCCCCeEEEEecCCCCcceEEEEecC
Q psy13629 186 TEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWT-DWGEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 186 ~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwt-d~~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
+++|+++-. +...|++.++++...+.+. .........+++|++++|+++ +......|+..++++ ...+.+....
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~lt~~g 335 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAERLTFQG 335 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEECc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeEEeecCC
Confidence 888987642 3457999999987766554 333334567899988877765 433457899999987 3333333221
Q ss_pred CcCceeEEEeccccEEEEeccc--eeeeeeecccccee
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVR 298 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~ 298 (395)
......++.++++.|+++... ...|...++++...
T Consensus 336 -~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 336 -NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred -CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 234467888889999887533 34677888765543
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=61.51 Aligned_cols=72 Identities=13% Similarity=0.229 Sum_probs=55.0
Q ss_pred eeEEEeCCCCeEEEEeeCC----------------CCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccc
Q psy13629 221 RAIALVPQDSIMFWTDWGE----------------VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGR 284 (395)
Q Consensus 221 ~~iavdp~~g~LYwtd~~~----------------~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~ 284 (395)
++++|++..|.+||||.+. ..++.+.++.. +...++-+++..|||++++.++..|++++..
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t---~~~~vl~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPST---KETTVLLDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTT---TEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCC---CeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence 5789999889999999531 26899999986 4555566678999999999999999999999
Q ss_pred eeeeeeecccc
Q psy13629 285 LTFIEVMDYDG 295 (395)
Q Consensus 285 ~~~I~~~~~dG 295 (395)
..+|.+.-+.|
T Consensus 78 ~~Ri~rywl~G 88 (89)
T PF03088_consen 78 RYRILRYWLKG 88 (89)
T ss_dssp GTEEEEEESSS
T ss_pred CceEEEEEEeC
Confidence 99998877766
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00069 Score=69.12 Aligned_cols=182 Identities=9% Similarity=0.059 Sum_probs=116.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC--CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~--~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++.+ .+...+........+.+|+++++.|+++...+ ..|+.+++++. ....+.. ........+..+.+
T Consensus 243 ~L~~~dl~t-g~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg---~~~~lt~-~~~~~~~p~wSpDG 317 (448)
T PRK04792 243 EIFVQDIYT-QVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK---ALTRITR-HRAIDTEPSWHPDG 317 (448)
T ss_pred EEEEEECCC-CCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC---CeEECcc-CCCCccceEECCCC
Confidence 577788876 33333433333345678999999998864333 36999998875 2333322 22334556777778
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++.. +...|+++++++...+.+.. ......+.+++|+.++||++... ...+|++.++++ ...+.+.....
T Consensus 318 ~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~--g~~~~lt~~~~ 394 (448)
T PRK04792 318 KSLIFTSERGGKPQIYRVNLASGKVSRLTF-EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET--GAMQVLTSTRL 394 (448)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEEec-CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC--CCeEEccCCCC
Confidence 88888753 34679999998766555542 22334456899999999888643 345789999987 44444433321
Q ss_pred cCceeEEEeccccEEEEeccc--eeeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~~~ 300 (395)
-...++.++++.|+++... ...++.++.+|...+.
T Consensus 395 --d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~ 431 (448)
T PRK04792 395 --DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKAR 431 (448)
T ss_pred --CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 1123577778888886533 3457788888876654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0013 Score=66.75 Aligned_cols=184 Identities=10% Similarity=-0.003 Sum_probs=121.4
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.+|.+++.++ .+...+...........|++++++|+++... ...|+..++++. ....+. .......+.++.+.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g---~~~~l~-~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG---QRELVG-NFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---cEEEee-cCCCcccCcEECCC
Confidence 4677788877 5555555666678889999999988877533 468999999865 333332 22223346678887
Q ss_pred CCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEE-eeCCCCeEEEEecCCCCcceEEEEecC
Q psy13629 186 TEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWT-DWGEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 186 ~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwt-d~~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
++.|+++-. +...|++.++++...+.+. ...........+|+.++|+++ +......|++.+++| ...+.+....
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~lt~~~ 333 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRRISFGG 333 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEcc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEEeecCC
Confidence 888877643 3457999999988776655 333345567889988877655 434467899999998 4444443321
Q ss_pred CcCceeEEEeccccEEEEecc--ceeeeeeeccccceeee
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~~ 300 (395)
..-....+.++++.|+++.. ....|..++++|...+.
T Consensus 334 -~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~ 372 (435)
T PRK05137 334 -GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI 372 (435)
T ss_pred -CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe
Confidence 12234567778888887653 33578888887765443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0018 Score=65.53 Aligned_cols=182 Identities=10% Similarity=0.062 Sum_probs=116.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.+++.++ .+...+...........|++++++|+++... ...|++.++++. ..+.+.. ........++.+.+
T Consensus 180 ~l~~~d~~g-~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g---~~~~l~~-~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDG-ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG---RREQITN-FEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCC-CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC---CEEEccC-CCCCcCCeEECCCC
Confidence 466777777 4445555555566788999999999776533 347999999865 2333322 11223357777878
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe-eCCCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD-WGEVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd-~~~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++-. +...|++.++++...+.+. ...........+|+.+.||++. ......|++.++++ ...+.+....
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~--g~~~~lt~~~- 330 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG--GRAERVTFVG- 330 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEcc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEeecCC-
Confidence 88887653 3457999999988766554 3333345567899888877654 33467899999877 3333333221
Q ss_pred cCceeEEEeccccEEEEeccce--eeeeeeccccceee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRL--TFIEVMDYDGYVRL 299 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~--~~I~~~~~dG~~~~ 299 (395)
.......++++++.|+++.... ..|..+++++...+
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR 368 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE
Confidence 1223456778888998886432 35777787765443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.001 Score=67.51 Aligned_cols=182 Identities=10% Similarity=0.063 Sum_probs=118.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++.+ .....+....+...+.+|++++++|+++-.. ...|+.+++++. ....+. .........+..+.+
T Consensus 227 ~i~~~dl~~-g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~Lt-~~~~~~~~~~~spDG 301 (435)
T PRK05137 227 RVYLLDLET-GQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG---TTTRLT-DSPAIDTSPSYSPDG 301 (435)
T ss_pred EEEEEECCC-CcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC---ceEEcc-CCCCccCceeEcCCC
Confidence 678888876 3444444444455678999999998776433 346999998875 223332 222234456777777
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++.. +...|++.+++|...+.+... ...-...+++|++++|+++... +..+|...+++| ...+.+....
T Consensus 302 ~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--~~~~~lt~~~- 377 (435)
T PRK05137 302 SQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--SGERILTSGF- 377 (435)
T ss_pred CEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--CceEeccCCC-
Confidence 88877653 345899999998877666532 2233457799999999887633 346899999887 4444443322
Q ss_pred cCceeEEEeccccEEEEeccce-----eeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRL-----TFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~-----~~I~~~~~dG~~~~~ 300 (395)
.....++.++++.|+++-... ..++.++++|...+.
T Consensus 378 -~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 378 -LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNERE 418 (435)
T ss_pred -CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEE
Confidence 345667888888888764322 468888888865543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0019 Score=64.69 Aligned_cols=181 Identities=16% Similarity=0.117 Sum_probs=117.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC--CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~--~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.+.+.++ .....+..........+|++++++|+|+.... ..|+.+++++. .... +.........+++.+.+
T Consensus 171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g---~~~~-~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG---QREK-VASFPGMNGAPAFSPDG 245 (417)
T ss_pred eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC---CEEE-eecCCCCccceEECCCC
Confidence 466677766 44444555444577788999999999987543 57888888764 2222 22222234457788877
Q ss_pred CeEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe-eCCCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD-WGEVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd-~~~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.||++... ...|+..++++...+.+.. ........+++|+.++|+++. .+....|++.++++ ...+.+.. ..
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~~l~~-~~ 321 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVRRLTF-RG 321 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEEEeec-CC
Confidence 889887543 4579999998876655542 222233557888888887654 33456899999987 34333332 22
Q ss_pred cCceeEEEeccccEEEEeccc--eeeeeeecccccee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVR 298 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~ 298 (395)
......+++++++.|+++... ..+|..+++++...
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 345567888888899988653 24678888776433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0015 Score=66.20 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=115.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
+|.+++.++ .....+..........+|++++++|+++... ...|+..++++. ....+ ..........++.+.+
T Consensus 177 ~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g---~~~~l-~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 177 QLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG---RRRVV-ANFKGSNSAPAWSPDG 251 (427)
T ss_pred EEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC---CEEEe-ecCCCCccceEECCCC
Confidence 567777776 4444444445566788999999999877543 346999999865 22323 2222234467888888
Q ss_pred CeEEEEe--CCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEE-eeCCCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTD--SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWT-DWGEVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd--~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwt-d~~~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++- .+...|+++++++...+.+. ...........+|+.++|+++ +.+....|+..++++ ...+.+....
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--g~~~~lt~~g- 327 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSGLRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--GAAQRVTFTG- 327 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCCcEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--CceEEEecCC-
Confidence 8898763 33457999999887765554 222334557799988877654 434567899999887 3333333221
Q ss_pred cCceeEEEeccccEEEEeccc--eeeeeeecccccee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVR 298 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~ 298 (395)
......++.++++.|+++... ...|...++++...
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 122345678788888877533 24677777765443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0013 Score=66.74 Aligned_cols=182 Identities=9% Similarity=0.051 Sum_probs=116.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++++ .....+........+.+|++++++|+++-.. ...|+.+++++. ....+. .........+..+.+
T Consensus 229 ~l~~~dl~~-g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g---~~~~lt-~~~~~~~~~~~spDG 303 (433)
T PRK04922 229 AIYVQDLAT-GQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR---QLTRLT-NHFGIDTEPTWAPDG 303 (433)
T ss_pred EEEEEECCC-CCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC---CeEECc-cCCCCccceEECCCC
Confidence 577888876 3433443333344578999999999876433 347999999875 223332 222233456778878
Q ss_pred CeEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++... ...|++.++++...+.+.. ........+++|+.++|+++... ....|+..++++ ...+.+....
T Consensus 304 ~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~--g~~~~Lt~~~- 379 (433)
T PRK04922 304 KSIYFTSDRGGRPQIYRVAASGGSAERLTF-QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST--GSVRTLTPGS- 379 (433)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC--CCeEECCCCC-
Confidence 888877532 4579999998766555542 23345578999999999887632 234799999877 3444443321
Q ss_pred cCceeEEEeccccEEEEecc--ceeeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~~ 300 (395)
.....++..+++.|+++.. ....+..++.+|...+.
T Consensus 380 -~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~ 417 (433)
T PRK04922 380 -LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQR 417 (433)
T ss_pred -CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 2234567777888877753 34568888888876544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0026 Score=64.25 Aligned_cols=180 Identities=6% Similarity=-0.044 Sum_probs=119.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
+|.++++.+ .+...+....+.....+|++++++|.++-.. +..|+.+++++. ..+.+..... .-..-...+.+
T Consensus 214 ~Iyv~dl~t-g~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g---~~~~LT~~~~-~d~~p~~SPDG 288 (419)
T PRK04043 214 TLYKYNLYT-GKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK---TLTQITNYPG-IDVNGNFVEDD 288 (419)
T ss_pred EEEEEECCC-CcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC---cEEEcccCCC-ccCccEECCCC
Confidence 678888876 4445555544445567899999988887543 457999998876 3333333221 11233577778
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCC-------CCeEEEEecCCCCcceEE
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE-------VPKIERGAMNGDPRHRKV 257 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~-------~~~I~~~~~dG~~~~~~~ 257 (395)
+.|||+.. +...|++.+++|...+.+....... ..++|+.++|.++.... ...|+..+++| ...+.
T Consensus 289 ~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~--g~~~~ 363 (419)
T PRK04043 289 KRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS--DYIRR 363 (419)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEeCccCCCcC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC--CCeEE
Confidence 89998863 3458999999988776555333222 38999999887776332 15899999988 45555
Q ss_pred EEecCCcCceeEEEeccccEEEEecc--ceeeeeeeccccceeee
Q psy13629 258 IVDSTIFWPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 258 lv~~~~~~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~~ 300 (395)
+.... .-....+.++++.|+++.. ....+..++++|.....
T Consensus 364 LT~~~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~ 406 (419)
T PRK04043 364 LTANG--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFL 406 (419)
T ss_pred CCCCC--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEE
Confidence 55432 1223567888888888753 34568899999976655
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0029 Score=63.97 Aligned_cols=181 Identities=10% Similarity=-0.010 Sum_probs=115.5
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCE-EEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSM-VCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~-lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.+|.++|.+| .+...+... +......|++++++ +|++... ...|++.++++. ..+.+.. ........++.+
T Consensus 169 ~~l~~~d~dg-~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~~~lt~-~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTL-TYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG---KKEKIAS-SQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCC-CceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC---cEEEEec-CCCcEEeeEECC
Confidence 4778888888 444444444 35667889999985 7775544 467999999875 3344432 111222345666
Q ss_pred CCCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEee-CCCCeEEEEecCCCCcceEEEEec
Q psy13629 185 LTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW-GEVPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 185 ~~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~-~~~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
.+++|.++.. ++..|+++++++...+.+..... .-..-..+|+.+.||++.. ++.+.|++.+++| ...+.+...
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~--g~~~rlt~~ 319 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS--GSVEQVVFH 319 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCC--CCeEeCccC
Confidence 6778877753 35689999999887666653322 1223468998888877753 3567999999998 444334333
Q ss_pred CCcCceeEEEeccccEEEEeccce--------eeeeeeccccceeee
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRL--------TFIEVMDYDGYVRLV 300 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~--------~~I~~~~~dG~~~~~ 300 (395)
... + ..+++++++|.++.... ..|..+++++...+.
T Consensus 320 g~~--~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~ 363 (419)
T PRK04043 320 GKN--N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR 363 (419)
T ss_pred CCc--C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE
Confidence 221 2 37788888887775332 467888877665443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0023 Score=64.10 Aligned_cols=183 Identities=12% Similarity=0.094 Sum_probs=116.1
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
..|.++++.+ .....+........+.+|+++++.|+++... ...|+..++++. ....+... .......+..+.
T Consensus 214 ~~i~v~d~~~-g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~---~~~~l~~~-~~~~~~~~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLAT-GQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK---QLTRLTNG-PGIDTEPSWSPD 288 (417)
T ss_pred cEEEEEECCC-CCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC---CEEECCCC-CCCCCCEEECCC
Confidence 3678888876 3333444444455678999999999887543 346888888865 22333222 112234466666
Q ss_pred CCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecC
Q psy13629 186 TEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 186 ~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
++.|+++.. ....|++.++++.....+. .........+++|..++|+++... ...+|..+++++ ...+.+....
T Consensus 289 g~~l~~~s~~~g~~~iy~~d~~~~~~~~l~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~ 365 (417)
T TIGR02800 289 GKSIAFTSDRGGSPQIYMMDADGGEVRRLT-FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--GGERVLTDTG 365 (417)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--CCeEEccCCC
Confidence 778887753 3457999999887665554 344556778899999999998744 245789999887 4444443321
Q ss_pred CcCceeEEEeccccEEEEeccce--eeeeeeccccceeee
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGRL--TFIEVMDYDGYVRLV 300 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~~--~~I~~~~~dG~~~~~ 300 (395)
.....++.++++.|+++.... ..++..+.+|.....
T Consensus 366 --~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~ 403 (417)
T TIGR02800 366 --LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRAR 403 (417)
T ss_pred --CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeE
Confidence 223346777788888876433 446666667655443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0038 Score=63.28 Aligned_cols=182 Identities=10% Similarity=0.079 Sum_probs=117.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++.+ .+...+..........+|++++++|+++... ...|+.+++++. ....+. .........+..+.+
T Consensus 224 ~i~i~dl~~-G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg---~~~~lt-~~~~~~~~~~wSPDG 298 (429)
T PRK03629 224 ALVIQTLAN-GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG---QIRQVT-DGRSNNTEPTWFPDS 298 (429)
T ss_pred EEEEEECCC-CCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC---CEEEcc-CCCCCcCceEECCCC
Confidence 567777766 4444444333445568999999999987443 346999999875 223332 222345667788878
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++.. +..+|++.++++...+.+. .........+++|+.++|+++... ....|+..++++ ...+.+....
T Consensus 299 ~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~--g~~~~Lt~~~- 374 (429)
T PRK03629 299 QNLAYTSDQAGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--GGVQVLTDTF- 374 (429)
T ss_pred CEEEEEeCCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC--CCeEEeCCCC-
Confidence 88866643 2458999999987666554 333445678899999888776532 346788899887 4444444321
Q ss_pred cCceeEEEeccccEEEEeccc--eeeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~~~ 300 (395)
.-....+.++++.|+++... ...+..++++|...+.
T Consensus 375 -~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~ 412 (429)
T PRK03629 375 -LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR 412 (429)
T ss_pred -CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEE
Confidence 11234577788888887532 3457888888877655
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.004 Score=63.08 Aligned_cols=175 Identities=11% Similarity=0.133 Sum_probs=113.2
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.+|.+.+.++ .+...+...........|++++++|.++... ...|+..++++. ..+.+ ......-..+++.+.
T Consensus 184 ~~i~i~d~dg-~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg---~~~~l-~~~~g~~~~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYDG-FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG---ARKVV-ASFRGHNGAPAFSPD 258 (429)
T ss_pred EEEEEECCCC-CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC---ceEEE-ecCCCccCceeECCC
Confidence 4677778887 3444444445567889999999999887543 347999998764 22222 221122335788888
Q ss_pred CCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe-eCCCCeEEEEecCCCCcceEEEEecC
Q psy13629 186 TEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD-WGEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 186 ~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd-~~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
++.|+++-. +...|++.++++...+.+. .........+.+|+..+|+++. .....+|+..+.+| ...+.+ ...
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--~~~~~l-~~~ 334 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--GGASLV-GGR 334 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCeEEe-cCC
Confidence 888988743 2346888899887766655 3334566789999988777653 33567899998887 334333 221
Q ss_pred CcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
. ....+.++++.|+.+.. +.+...++.+.
T Consensus 335 -~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g 363 (429)
T PRK01742 335 -G--YSAQISADGKTLVMING--DNVVKQDLTSG 363 (429)
T ss_pred -C--CCccCCCCCCEEEEEcC--CCEEEEECCCC
Confidence 1 23567777888887754 45656676543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0047 Score=62.43 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=115.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++++ .....+........+.+|++++++|+++-.. ...|+++++++. ....+. .........+..+.+
T Consensus 224 ~l~~~~l~~-g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~lt-~~~~~~~~~~~spDg 298 (430)
T PRK00178 224 RIFVQNLDT-GRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR---QLSRVT-NHPAIDTEPFWGKDG 298 (430)
T ss_pred EEEEEECCC-CCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC---CeEEcc-cCCCCcCCeEECCCC
Confidence 577778876 3333333333344568899999999876433 347999999875 223232 222233455677778
Q ss_pred CeEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.||++... ...|++.++++...+.+... .......+++|++++|+++... ....|...++++ ...+.+....
T Consensus 299 ~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t--g~~~~lt~~~- 374 (430)
T PRK00178 299 RTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR--GSVRILTDTS- 374 (430)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCC--CCEEEccCCC-
Confidence 888877532 45799999987766555422 2333456789999999988633 235689999987 4455554332
Q ss_pred cCceeEEEeccccEEEEecc--ceeeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~~ 300 (395)
.-....+.++++.|+++.. +...+..++.+|...+.
T Consensus 375 -~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~ 412 (430)
T PRK00178 375 -LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLP 412 (430)
T ss_pred -CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 2223467778888888753 33567888888876543
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0021 Score=61.60 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=97.0
Q ss_pred CCCCeEEEEEEcCC-----CEEEEEECCCCeEEEEEccCCCCCceEEEEe--------------CC-----CCCcceEEE
Q psy13629 127 DLEEGAAIDYYYKK-----SMVCWTDHGTEMISCCTFDGNNVGSKHNVIT--------------NG-----LITPDGLAI 182 (395)
Q Consensus 127 ~~~~~~gl~~d~~~-----~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~--------------~~-----~~~p~glAV 182 (395)
.......+.+|... ..+|.+|.....|.++++.... ...+.. .+ .....|+|.
T Consensus 59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~---s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial 135 (287)
T PF03022_consen 59 PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGK---SWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIAL 135 (287)
T ss_dssp TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTE---EEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE
T ss_pred cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCc---EEEEecCCcceeccccceeccCceEecCCCcccccc
Confidence 34456777788744 5899999888888888887542 111111 11 123567888
Q ss_pred ec---CCCeEEEEeCCCCeEEEEECC----CC---------ceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEE
Q psy13629 183 DW---LTEKLYWTDSETNKLEVSSLD----GK---------KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERG 246 (395)
Q Consensus 183 D~---~~~~LYwtd~~~~~I~v~~ld----g~---------~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~ 246 (395)
.+ .++.|||.--...++++...+ .. ..+.+- ....+.-|+++|+ +|.||+++.. ...|.+.
T Consensus 136 ~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~-~G~ly~~~~~-~~aI~~w 212 (287)
T PF03022_consen 136 SPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDP-NGNLYFTDVE-QNAIGCW 212 (287)
T ss_dssp -TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEET-TTEEEEEECC-CTEEEEE
T ss_pred CCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECC-CCcEEEecCC-CCeEEEE
Confidence 66 445899999777778877632 11 112222 2235678999998 9999999965 7899999
Q ss_pred ecCCCCc--ceEEEEec-C-CcCceeEEEec-cccEEEEeccceeee
Q psy13629 247 AMNGDPR--HRKVIVDS-T-IFWPNGIAIDF-NNRLLYWIDGRLTFI 288 (395)
Q Consensus 247 ~~dG~~~--~~~~lv~~-~-~~~P~glalD~-~~~rLYwaD~~~~~I 288 (395)
+.++... +.++++.. . +.||++|+++. .++.||+...+.++.
T Consensus 213 ~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~~ 259 (287)
T PF03022_consen 213 DPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQRF 259 (287)
T ss_dssp ETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--SS
T ss_pred eCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchHh
Confidence 9997422 34455553 4 88999999994 268999998666654
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.005 Score=62.39 Aligned_cols=182 Identities=9% Similarity=0.086 Sum_probs=114.5
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++.+ .....+........+.+|++++++|+++-.. ...|+.+++++. ..+.+.. ........+..+.+
T Consensus 221 ~I~~~dl~~-g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~---~~~~lt~-~~~~~~~~~wSpDG 295 (427)
T PRK02889 221 VVYVHDLAT-GRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS---GLRRLTQ-SSGIDTEPFFSPDG 295 (427)
T ss_pred EEEEEECCC-CCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC---CcEECCC-CCCCCcCeEEcCCC
Confidence 478888876 3334443333455678999999999876333 346888888765 2233322 22223456677778
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++.. +...|++.++++...+.+... .......+++|++++|+++... ....|+..++++ ...+.+....
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~--g~~~~lt~~~- 371 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT--GQVTALTDTT- 371 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC--CCeEEccCCC-
Confidence 88887642 355788888887665544422 2233457899999998877532 335799999887 4444444332
Q ss_pred cCceeEEEeccccEEEEec--cceeeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWID--GRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD--~~~~~I~~~~~dG~~~~~ 300 (395)
......+.++++.|+++- .+...+..++.+|.....
T Consensus 372 -~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~ 409 (427)
T PRK02889 372 -RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQR 409 (427)
T ss_pred -CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEE
Confidence 234557787888887774 233457788888865544
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.009 Score=60.59 Aligned_cols=188 Identities=8% Similarity=0.037 Sum_probs=115.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEE--EccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCC--TFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~--~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
+|.++++++ +....+....+...+.+|++++++|.++-.. ...|+.. ++++........+...........++.+
T Consensus 212 ~I~~~~l~~-g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 212 KIFLGSLEN-PAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred eEEEEECCC-CCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC
Confidence 788888887 4444555444555678999999999887532 2346554 3332111122334433233344568888
Q ss_pred CCCeEEEEeC--CCCeEEEEECCCCc-eEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEe
Q psy13629 185 LTEKLYWTDS--ETNKLEVSSLDGKK-RKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 185 ~~~~LYwtd~--~~~~I~v~~ldg~~-~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
.++.|+|+.. +...|++.++++.. ....+..........+.+|++++|+++... ....|+..++++ ...+.+..
T Consensus 291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~--g~~~~Lt~ 368 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT--GRDYQLTT 368 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC--CCeEEccC
Confidence 8888887753 34478888886432 222232333345677899999988877532 346899999988 44444543
Q ss_pred cCCcCceeEEEeccccEEEEec--cceeeeeeeccccceeee
Q psy13629 261 STIFWPNGIAIDFNNRLLYWID--GRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 261 ~~~~~P~glalD~~~~rLYwaD--~~~~~I~~~~~dG~~~~~ 300 (395)
. .......+..++++.|+++- .+...|+.++++|...+.
T Consensus 369 ~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 369 S-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred C-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 3 22345567777788888763 234668888887765443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0004 Score=67.99 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=98.9
Q ss_pred CCCeEEEEEEcCCCEEEEEECC-------------CCeEEEEEccCCCC---------CceEEEEeCCCCCcceEEEecC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHG-------------TEMISCCTFDGNNV---------GSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~-------------~~~I~~~~~dg~~~---------~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.....+|+|++++ +||++-.. .++|.|++.+|+-. .....+...++.+|.++++|+.
T Consensus 113 ~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~ 191 (331)
T PF07995_consen 113 NHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPN 191 (331)
T ss_dssp SS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETT
T ss_pred CCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECC
Confidence 4556789999876 99999432 26899999998510 0123466778999999999998
Q ss_pred CCeEEEEeCCC---CeEEEEECCCC-------------------------ceEEEE-ecCCCCceeEEEeCC------CC
Q psy13629 186 TEKLYWTDSET---NKLEVSSLDGK-------------------------KRKVLY-WEDIDQPRAIALVPQ------DS 230 (395)
Q Consensus 186 ~~~LYwtd~~~---~~I~v~~ldg~-------------------------~~~~l~-~~~~~~P~~iavdp~------~g 230 (395)
++.||.+|.+. ..|.+....+. ....++ -..-..|.|+++... .|
T Consensus 192 tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g 271 (331)
T PF07995_consen 192 TGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRG 271 (331)
T ss_dssp TTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTT
T ss_pred CCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccC
Confidence 89999999443 34444432110 001111 123467899998844 66
Q ss_pred eEEEEeeCCCCeEEEEecCCC--CcceEEEEecCCcCceeEEEeccccEEEEeccceeeeee
Q psy13629 231 IMFWTDWGEVPKIERGAMNGD--PRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEV 290 (395)
Q Consensus 231 ~LYwtd~~~~~~I~~~~~dG~--~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~ 290 (395)
.+|+++++ ..+|.++.++.. ....+.++...-..|.+|++++ ++.||++|...++|++
T Consensus 272 ~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 272 DLFVADYG-GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGALYVSDDSDGKIYR 331 (331)
T ss_dssp EEEEEETT-TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEEEEEE-TTTTEEE
T ss_pred cEEEecCC-CCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeEEEEECCCCeEeC
Confidence 79999986 789999999741 1122333322222689999995 5889999877777754
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.025 Score=51.37 Aligned_cols=177 Identities=10% Similarity=0.023 Sum_probs=111.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+++++..................+.|.+.++.|+.+. .++.|..++++... ...........+..+++++. +.
T Consensus 32 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~-~~ 106 (289)
T cd00200 32 TIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-SDKTIRLWDLETGE---CVRTLTGHTSYVSSVAFSPD-GR 106 (289)
T ss_pred EEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-CCCeEEEEEcCccc---ceEEEeccCCcEEEEEEcCC-CC
Confidence 566677665222233333334445899998876666655 57889999988642 22223333346777888765 56
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
++++....+.|.+.++........+......+..++++|.+.+++.+. ....|...++.. ......+..+......
T Consensus 107 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~~i~i~d~~~--~~~~~~~~~~~~~i~~ 182 (289)
T cd00200 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS--QDGTIKLWDLRT--GKCVATLTGHTGEVNS 182 (289)
T ss_pred EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc--CCCcEEEEEccc--cccceeEecCccccce
Confidence 666666678999999985444444433455689999999866666554 245677777764 2222223333345778
Q ss_pred EEEeccccEEEEeccceeeeeeecccc
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
+.++..++.|+.+.. .+.|...++..
T Consensus 183 ~~~~~~~~~l~~~~~-~~~i~i~d~~~ 208 (289)
T cd00200 183 VAFSPDGEKLLSSSS-DGTIKLWDLST 208 (289)
T ss_pred EEECCCcCEEEEecC-CCcEEEEECCC
Confidence 888877667777765 67777777654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.02 Score=52.06 Aligned_cols=177 Identities=10% Similarity=0.003 Sum_probs=110.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+++++........+......+.++.+++.+ .++++...++.|..++++.. .....+......+..+++++.+..
T Consensus 74 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~ 149 (289)
T cd00200 74 TIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETG---KCLTTLRGHTDWVNSVAFSPDGTF 149 (289)
T ss_pred eEEEEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCc---EEEEEeccCCCcEEEEEEcCcCCE
Confidence 66777776533333444445578899999874 45556556889999998843 222233333446788999886444
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
+ ++....+.|.+.++........+.........++++|.+..|+.+. . ...|...++.. .........+...+..
T Consensus 150 l-~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-~~~i~i~d~~~--~~~~~~~~~~~~~i~~ 224 (289)
T cd00200 150 V-ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-S-DGTIKLWDLST--GKCLGTLRGHENGVNS 224 (289)
T ss_pred E-EEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-C-CCcEEEEECCC--CceecchhhcCCceEE
Confidence 4 4444578899999985544444434445788999999877777765 2 56677778764 2222222223335777
Q ss_pred EEEeccccEEEEeccceeeeeeecccc
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
++++.. +.++.+....+.|...+.+.
T Consensus 225 ~~~~~~-~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 225 VAFSPD-GYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred EEEcCC-CcEEEEEcCCCcEEEEEcCC
Confidence 888855 55555554566777666653
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.008 Score=56.06 Aligned_cols=131 Identities=14% Similarity=0.029 Sum_probs=79.5
Q ss_pred cccCCCC-cee-----EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe
Q psy13629 98 EKLQPDG-AYL-----LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT 171 (395)
Q Consensus 98 ~~~~~~~-~~~-----~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~ 171 (395)
..+++|+ +++ +-|-++|....+..+..+..-.+|.|+-..++++ .+++|... .|.|++.+.- +.+....
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~---evt~f~l 141 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTL---EVTRFPL 141 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCccc---ceEEeec
Confidence 4677776 555 3566677666444556677778899999998765 56677544 8988887643 2233222
Q ss_pred C---CCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 172 N---GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 172 ~---~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
. .-.+-+-..+|. .|+|+||.. .+.-.+.|......++.-.....-|+||++.| +|.+|++.
T Consensus 142 p~~~a~~nlet~vfD~-~G~lWFt~q-~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atp-dGsvwyas 206 (353)
T COG4257 142 PLEHADANLETAVFDP-WGNLWFTGQ-IGAYGRLDPARNVISVFPAPQGGGPYGICATP-DGSVWYAS 206 (353)
T ss_pred ccccCCCcccceeeCC-CccEEEeec-cccceecCcccCceeeeccCCCCCCcceEECC-CCcEEEEe
Confidence 2 224455677886 788888874 23333444444444444334455667777666 44555553
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0044 Score=61.59 Aligned_cols=150 Identities=15% Similarity=0.085 Sum_probs=92.2
Q ss_pred CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCC
Q psy13629 140 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQ 219 (395)
Q Consensus 140 ~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~ 219 (395)
.+.+|+++..++.|..++.+.. +....+..+..-+.++++.+.++.+|.++. .+.|.+.|+.......-+ .....
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~---~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i-~~G~~ 79 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATN---KVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATI-KVGGN 79 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEE-E-SSE
T ss_pred ccEEEEEecCCCEEEEEECCCC---eEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEE-ecCCC
Confidence 3566788888899998887754 223333333333566788888899999986 589999999887755445 45678
Q ss_pred ceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCC----c--CceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 220 PRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI----F--WPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 220 P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~----~--~P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
|++++++++.+++|++++. .+.+..++.... ...+.+-.... . .+.++.-.+.+...+++--..+.|..+++
T Consensus 80 ~~~i~~s~DG~~~~v~n~~-~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYE-PGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp EEEEEE--TTTEEEEEEEE-TTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred cceEEEcCCCCEEEEEecC-CCceeEeccccc-cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 9999999999999999966 567777776541 22222222111 1 12345444444444444455688888886
Q ss_pred ccc
Q psy13629 294 DGY 296 (395)
Q Consensus 294 dG~ 296 (395)
...
T Consensus 158 ~d~ 160 (369)
T PF02239_consen 158 SDP 160 (369)
T ss_dssp TTS
T ss_pred ccc
Confidence 543
|
... |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0045 Score=57.69 Aligned_cols=164 Identities=12% Similarity=0.004 Sum_probs=114.8
Q ss_pred ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeE
Q psy13629 120 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKL 199 (395)
Q Consensus 120 ~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I 199 (395)
..+..++.-..+..++-+++ +.+++++...+.|-+.+.... +.+.+......+|.+|.+++ .+..++||..+ .|
T Consensus 53 ~~~fpvp~G~ap~dvapapd-G~VWft~qg~gaiGhLdP~tG---ev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI 126 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPD-GAVWFTAQGTGAIGHLDPATG---EVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AI 126 (353)
T ss_pred cceeccCCCCCccccccCCC-CceEEecCccccceecCCCCC---ceEEEecCCCCCCceEEECC-CCCeeEecCcc-ee
Confidence 34455666777888888865 568888888999998888765 66778888889999999998 78888999876 89
Q ss_pred EEEECCCCceEEEE---ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEecccc
Q psy13629 200 EVSSLDGKKRKVLY---WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR 276 (395)
Q Consensus 200 ~v~~ldg~~~~~l~---~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~ 276 (395)
.|.+......+..- .....+-+..++|+ .|.|++|.... .--|.+... ...+++-...-.-|+||+.. .++
T Consensus 127 ~R~dpkt~evt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~G--~yGrLdPa~--~~i~vfpaPqG~gpyGi~at-pdG 200 (353)
T COG4257 127 GRLDPKTLEVTRFPLPLEHADANLETAVFDP-WGNLWFTGQIG--AYGRLDPAR--NVISVFPAPQGGGPYGICAT-PDG 200 (353)
T ss_pred EEecCcccceEEeecccccCCCcccceeeCC-CccEEEeeccc--cceecCccc--CceeeeccCCCCCCcceEEC-CCC
Confidence 99887544433322 12345566788997 67888887321 112333322 23344433445579999999 456
Q ss_pred EEEEeccceeeeeeecc-cc
Q psy13629 277 LLYWIDGRLTFIEVMDY-DG 295 (395)
Q Consensus 277 rLYwaD~~~~~I~~~~~-dG 295 (395)
.+|++.-..+.|.++|. +|
T Consensus 201 svwyaslagnaiaridp~~~ 220 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred cEEEEeccccceEEcccccC
Confidence 79999888888888884 44
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0092 Score=56.22 Aligned_cols=171 Identities=14% Similarity=0.124 Sum_probs=109.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCC---ceEEEEeC----CCCCcceEE
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG---SKHNVITN----GLITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~---~~~~i~~~----~~~~p~glA 181 (395)
.|-.++..|+---+...+..+.+.+|+|-. ++..-.+|...++++.+.++-.... ....+... .-..=+|+|
T Consensus 109 ~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA 187 (316)
T COG3204 109 AIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLA 187 (316)
T ss_pred eEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeee
Confidence 555566666333456677889999999974 4555567778888888888754210 00112221 123468999
Q ss_pred EecCCCeEEEEeCCC-CeEEEEECCCCceEEEEec----C----CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC
Q psy13629 182 IDWLTEKLYWTDSET-NKLEVSSLDGKKRKVLYWE----D----IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP 252 (395)
Q Consensus 182 VD~~~~~LYwtd~~~-~~I~v~~ldg~~~~~l~~~----~----~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~ 252 (395)
.|+.++.+|++-..+ -.|+..+..-+....-+.. . +....|+.+|+.++.|++-. .++..+...+.+|..
T Consensus 188 ~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS-~ESr~l~Evd~~G~~ 266 (316)
T COG3204 188 WDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLS-DESRRLLEVDLSGEV 266 (316)
T ss_pred cCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEe-cCCceEEEEecCCCe
Confidence 999999999886432 3555555333222111111 1 34567899999999988765 467888999999942
Q ss_pred cceEEEEe------cCCcCceeEEEeccccEEEEec
Q psy13629 253 RHRKVIVD------STIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 253 ~~~~~lv~------~~~~~P~glalD~~~~rLYwaD 282 (395)
...-.+.. .++.+|-|+|+| +++.||.+-
T Consensus 267 ~~~lsL~~g~~gL~~dipqaEGiamD-d~g~lYIvS 301 (316)
T COG3204 267 IELLSLTKGNHGLSSDIPQAEGIAMD-DDGNLYIVS 301 (316)
T ss_pred eeeEEeccCCCCCcccCCCcceeEEC-CCCCEEEEe
Confidence 22222222 147799999999 778899875
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.042 Score=55.75 Aligned_cols=188 Identities=9% Similarity=0.003 Sum_probs=112.1
Q ss_pred eEEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCE---EEEEECC-CCeEEEEEccCCCCCceEEEEeCCCCCcceEEE
Q psy13629 107 LLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSM---VCWTDHG-TEMISCCTFDGNNVGSKHNVITNGLITPDGLAI 182 (395)
Q Consensus 107 ~~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~---lywsd~~-~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAV 182 (395)
..+|.+++.+| .+...+.........-.|+++++. +|.+... ...|+..++++. ..+.+.. ........++
T Consensus 164 ~~~l~~~d~dG-~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g---~~~~lt~-~~g~~~~p~w 238 (428)
T PRK01029 164 QGELWSVDYDG-QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP---AGKKILA-LQGNQLMPTF 238 (428)
T ss_pred cceEEEEcCCC-CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC---CceEeec-CCCCccceEE
Confidence 45788888888 454445444444455689999875 3456533 357999999986 3333332 2223345678
Q ss_pred ecCCCeEEEEeC--CCCeEEEE--ECCC---CceEEEEecCCCCceeEEEeCCCCeEEEEe-eCCCCeEEEEecCCCCcc
Q psy13629 183 DWLTEKLYWTDS--ETNKLEVS--SLDG---KKRKVLYWEDIDQPRAIALVPQDSIMFWTD-WGEVPKIERGAMNGDPRH 254 (395)
Q Consensus 183 D~~~~~LYwtd~--~~~~I~v~--~ldg---~~~~~l~~~~~~~P~~iavdp~~g~LYwtd-~~~~~~I~~~~~dG~~~~ 254 (395)
.+.++.|.|+-. +...|++. ++++ ...+.+...........+++|++++|+++. ..+...|++.++++....
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 888888888763 23356664 4442 233344423233345678999988777654 345678999988752122
Q ss_pred eEEEEecCCcCceeEEEeccccEEEEeccc--eeeeeeeccccceeee
Q psy13629 255 RKVIVDSTIFWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVRLV 300 (395)
Q Consensus 255 ~~~lv~~~~~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~~~ 300 (395)
.+.+... .......+..+++++|+++... ...|...++++...+.
T Consensus 319 ~~~lt~~-~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 319 PRLLTKK-YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ 365 (428)
T ss_pred eEEeccC-CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE
Confidence 3333222 2233456778888888887432 3467888877665543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.062 Score=50.41 Aligned_cols=172 Identities=13% Similarity=0.020 Sum_probs=108.6
Q ss_pred EEEEEeeCCCCCcc--EEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKP--VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~--~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
+.|+++++.. .+. ....+..--..|++.- +++||---+.++..++++.+.-. ...+... ...--||+-|
T Consensus 68 S~l~~~d~~t-g~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~--~~~~~~y--~~EGWGLt~d-- 138 (264)
T PF05096_consen 68 SSLRKVDLET-GKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK--KIGTFPY--PGEGWGLTSD-- 138 (264)
T ss_dssp EEEEEEETTT-SSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE--EEEEEE---SSS--EEEEC--
T ss_pred EEEEEEECCC-CcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce--EEEEEec--CCcceEEEcC--
Confidence 5889999987 333 3334444456778775 67899999999999999998531 2222322 2467789966
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEE--Ee-c--CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVL--YW-E--DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l--~~-~--~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
+..||.+|. +++|...|+..-..... +. . ....-+-|..- +|+||-.-|. ...|.++++.. ....-.++
T Consensus 139 g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~-td~I~~Idp~t--G~V~~~iD 212 (264)
T PF05096_consen 139 GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQ-TDRIVRIDPET--GKVVGWID 212 (264)
T ss_dssp SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETT-SSEEEEEETTT---BEEEEEE
T ss_pred CCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCC-CCeEEEEeCCC--CeEEEEEE
Confidence 678999985 68899999875433221 11 1 14455566664 8999988887 78999999975 23322222
Q ss_pred -cC--------------CcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 261 -ST--------------IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 261 -~~--------------~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+. ..--||||.|...+++|++=-.=.+++.+.+.
T Consensus 213 ls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 213 LSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp -HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred hhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 11 12479999999999999997666677666554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.019 Score=54.13 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=116.3
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEE-EeCCCCeEEEEECC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYW-TDSETNKLEVSSLD 205 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYw-td~~~~~I~v~~ld 205 (395)
...+..+|.|+++.+.||.+-...-.|....++|. -..++...++..|++|++ ++++.|. +|....+++...++
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd---lirtiPL~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD---LIRTIPLTGFSDPETIEY--IGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCc---eEEEecccccCChhHeEE--ecCCEEEEEehhcceEEEEEEc
Confidence 34568899999999999998777778999999997 567788888999999987 4566655 56667788877776
Q ss_pred CCceEEEEec------C----CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc----------ceEEEEecCCcC
Q psy13629 206 GKKRKVLYWE------D----IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR----------HRKVIVDSTIFW 265 (395)
Q Consensus 206 g~~~~~l~~~------~----~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~----------~~~~lv~~~~~~ 265 (395)
.......+.. . -.--.|+|-||.++.||++--...-.|+.....-..- .+..++. -
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~----D 234 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL----D 234 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee----c
Confidence 5533222211 1 1123589999999999998744556677766432100 1112222 3
Q ss_pred ceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 266 PNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 266 P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
-.|+..|...+.|++.-..+..+..++.+|..+.
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~ 268 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIE 268 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEecCCCeee
Confidence 5788888888899998888888888888887643
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.048 Score=55.28 Aligned_cols=176 Identities=8% Similarity=0.069 Sum_probs=107.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCC--eEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~--~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.+.++.+ .....+..........+|++++++|+++-..++ .|+.+++++. ....+. .........+..+.+
T Consensus 229 ~i~i~dl~t-g~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~---~~~~lt-~~~~~~~~~~wSpDG 303 (429)
T PRK01742 229 QLVVHDLRS-GARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG---TPSQLT-SGAGNNTEPSWSPDG 303 (429)
T ss_pred EEEEEeCCC-CceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC---CeEeec-cCCCCcCCEEECCCC
Confidence 477788766 333333333334457899999999988743333 5778888765 223332 233345678888888
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCc
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIF 264 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~ 264 (395)
+.|+++.. +..+|+..+.++...+.+ .... ...+++|++++|+.+. ...|.+.++.+ ...+.+....
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~~SpDG~~ia~~~---~~~i~~~Dl~~--g~~~~lt~~~-- 372 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQISADGKTLVMIN---GDNVVKQDLTS--GSTEVLSSTF-- 372 (429)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEEe-cCCC---CCccCCCCCCEEEEEc---CCCEEEEECCC--CCeEEecCCC--
Confidence 88887753 345788888877655443 2221 4567899999988775 24577788775 3333333221
Q ss_pred CceeEEEeccccEEEEecc--ceeeeeeeccccceeee
Q psy13629 265 WPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 265 ~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~~ 300 (395)
.-....+.++++.|+++.. ....++.++.+|...+.
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 1234567777888887753 22334555677765544
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0064 Score=63.26 Aligned_cols=154 Identities=11% Similarity=-0.016 Sum_probs=95.7
Q ss_pred cCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe--cCCC-----------------eEEEEeCCCCe
Q psy13629 138 YKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID--WLTE-----------------KLYWTDSETNK 198 (395)
Q Consensus 138 ~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD--~~~~-----------------~LYwtd~~~~~ 198 (395)
++++.||.-|..+.+|-|++++--. ..+.+-........|+... +.++ .++-++...+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~--~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~ 216 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMK--CDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSL 216 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEe--eceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEE
Confidence 4578899999888999999998531 1123334445556666654 2333 34444444566
Q ss_pred EEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCC-------------C-------------------------
Q psy13629 199 LEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE-------------V------------------------- 240 (395)
Q Consensus 199 I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~-------------~------------------------- 240 (395)
+.+.|.+.....--+ ....+|+.++++++.+++|+|.... .
T Consensus 217 vSvID~etmeV~~qV-~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~g 295 (635)
T PRK02888 217 FTAVDAETMEVAWQV-MVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGG 295 (635)
T ss_pred EEEEECccceEEEEE-EeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECC
Confidence 677766643332111 1244899999999999999995211 0
Q ss_pred CeEEEEecCC-----CCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 241 PKIERGAMNG-----DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 241 ~~I~~~~~dG-----~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
.+|..++... ....+.+.+ -..|+|++++++++++|++...++.|+++++....
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 1122222110 000111112 23799999999999999999999999999987644
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00084 Score=40.52 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.8
Q ss_pred CCCcceEEEecCCCeEEEEeCCCCeEEEE
Q psy13629 174 LITPDGLAIDWLTEKLYWTDSETNKLEVS 202 (395)
Q Consensus 174 ~~~p~glAVD~~~~~LYwtd~~~~~I~v~ 202 (395)
+..|.|||+| .+|+||++|.++++|.++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 3579999999 699999999999999874
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.035 Score=57.95 Aligned_cols=189 Identities=12% Similarity=0.052 Sum_probs=112.1
Q ss_pred ccCCCCcee-------EEEEEeeCCC-CCccEEecCCCCCeEEEEEE--cCCCEEEEEEC-----------------CCC
Q psy13629 99 KLQPDGAYL-------LDIRIANLSR-PLKPVTIIKDLEEGAAIDYY--YKKSMVCWTDH-----------------GTE 151 (395)
Q Consensus 99 ~~~~~~~~~-------~~I~~~~l~~-~~~~~~~~~~~~~~~gl~~d--~~~~~lywsd~-----------------~~~ 151 (395)
....|+.|+ ..+-+++++- +....+.+++.....|+.+. +.++.+|.... ..+
T Consensus 136 ~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~ 215 (635)
T PRK02888 136 DGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRS 215 (635)
T ss_pred CCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeE
Confidence 455556665 3667777776 33344557888888888887 56777665432 113
Q ss_pred eEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCC-----------------------------------
Q psy13629 152 MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET----------------------------------- 196 (395)
Q Consensus 152 ~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~----------------------------------- 196 (395)
.+..++.+.-. -...+... ..|..+++++.++.+|+|....
T Consensus 216 ~vSvID~etme--V~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 216 LFTAVDAETME--VAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred EEEEEECccce--EEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 34444433211 11222232 3899999999889999885211
Q ss_pred ----CeEEEEECCC-----CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC-------cceEEEEe
Q psy13629 197 ----NKLEVSSLDG-----KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP-------RHRKVIVD 260 (395)
Q Consensus 197 ----~~I~v~~ldg-----~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~-------~~~~~lv~ 260 (395)
+++.+.|... ......+ ....+|.|++++|+.+++|++.. ..+.|..+++.... .-+.+++.
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVank-lS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGK-LSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCC-CCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 3344444433 1122222 45789999999999999999984 47788888886411 11223333
Q ss_pred c-C-CcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 261 S-T-IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 261 ~-~-~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+ . -..|-..++|-. ++.|.+=--...|..-+++
T Consensus 370 evevGlGPLHTaFDg~-G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 370 EPELGLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred eeccCCCcceEEECCC-CCEEEeEeecceeEEEehH
Confidence 2 1 225877888844 4688774333444444433
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0009 Score=40.38 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=23.5
Q ss_pred cCceeEEEeccccEEEEeccceeeeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRLTFIEV 290 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~~~I~~ 290 (395)
.+|.|+++| .+++||++|.+.++|.+
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence 579999999 88999999999998865
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.052 Score=55.16 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=76.9
Q ss_pred EEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEE------e-cCCCCceeEEEeCC------CCeEE
Q psy13629 167 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY------W-EDIDQPRAIALVPQ------DSIMF 233 (395)
Q Consensus 167 ~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~------~-~~~~~P~~iavdp~------~g~LY 233 (395)
..++..++..|.+|++.+ .++||++++..++|.+.+.++.....+. . ....-+.|||++|. +++||
T Consensus 22 ~~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence 456677899999999998 6789999987799999987664433221 1 13455799999976 46889
Q ss_pred EEeeC--------CCCeEEEEecCCC---CcceEEEEecC----CcCceeEEEeccccEEEEe
Q psy13629 234 WTDWG--------EVPKIERGAMNGD---PRHRKVIVDST----IFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 234 wtd~~--------~~~~I~~~~~dG~---~~~~~~lv~~~----~~~P~glalD~~~~rLYwa 281 (395)
++-.. ...+|.|+.++.. ....+.++... .+.-..|+++++ +.||++
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPD-G~LYVs 162 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPD-GKIYYT 162 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCC-CcEEEE
Confidence 87421 2468999988631 23345555431 233456888865 569996
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.27 Score=46.17 Aligned_cols=158 Identities=11% Similarity=0.003 Sum_probs=104.1
Q ss_pred eEEEEEEcCCCEEEEEECCCC--eEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCc
Q psy13629 131 GAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~~~--~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~ 208 (395)
.-||.|+ .++.||-|....+ .|.+++++... .....-...--.-+||++- +++||--.+..+...++|.+.-.
T Consensus 47 TQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~--~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 47 TQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGK--VLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSS--EEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred CccEEec-CCCEEEEeCCCCCcEEEEEEECCCCc--EEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 4678885 3567998886544 79999998753 2234444555578999995 78999999999999999998755
Q ss_pred eEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC---CcCceeEEEeccccEEEEeccce
Q psy13629 209 RKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST---IFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 209 ~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~---~~~P~glalD~~~~rLYwaD~~~ 285 (395)
...-+ .-..+..||+-| +..|+.|| | +.+|+..+.+.-...+++-|..+ +.+-|.|.. .++.||=--+..
T Consensus 122 ~~~~~-~y~~EGWGLt~d--g~~Li~SD-G-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~--i~G~IyANVW~t 194 (264)
T PF05096_consen 122 KIGTF-PYPGEGWGLTSD--GKRLIMSD-G-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY--INGKIYANVWQT 194 (264)
T ss_dssp EEEEE-E-SSS--EEEEC--SSCEEEE--S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE--ETTEEEEEETTS
T ss_pred EEEEE-ecCCcceEEEcC--CCEEEEEC-C-ccceEEECCcccceEEEEEEEECCEECCCcEeEEE--EcCEEEEEeCCC
Confidence 54434 223578999965 77899999 5 67898888765323444444432 334555554 478888778999
Q ss_pred eeeeeeccccceeee
Q psy13629 286 TFIEVMDYDGYVRLV 300 (395)
Q Consensus 286 ~~I~~~~~dG~~~~~ 300 (395)
+.|.++|+....+..
T Consensus 195 d~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 195 DRIVRIDPETGKVVG 209 (264)
T ss_dssp SEEEEEETTT-BEEE
T ss_pred CeEEEEeCCCCeEEE
Confidence 999999986655544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.086 Score=52.63 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=88.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+-+++.++ .+...+.++++++.++..++.++++.+++ ....|+.++++.. +.+.+-...-.-..++++.+..+-
T Consensus 383 ~l~iyd~~~-~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididng---nv~~idkS~~~lItdf~~~~nsr~ 457 (668)
T COG4946 383 KLGIYDKDG-GEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNG---NVRLIDKSEYGLITDFDWHPNSRW 457 (668)
T ss_pred eEEEEecCC-ceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCC---CeeEecccccceeEEEEEcCCcee
Confidence 445667766 66778889999999999999999888887 6678999999976 334333334445667777666665
Q ss_pred EEEEe---CCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 189 LYWTD---SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 189 LYwtd---~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
|-++- ..+..|.+++++|...-.+. +.-..-.+-|+||+.++||+-.
T Consensus 458 iAYafP~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEecCcceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEEEe
Confidence 54332 23568999999997665554 4455566778999999999865
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.49 Score=46.13 Aligned_cols=110 Identities=14% Similarity=0.190 Sum_probs=69.4
Q ss_pred CCCCCeEEEEEEcCCCEEE-EEECCC----CeEEEEEccCC--CCCce---EEEEeCC---------CCCcceEEEecCC
Q psy13629 126 KDLEEGAAIDYYYKKSMVC-WTDHGT----EMISCCTFDGN--NVGSK---HNVITNG---------LITPDGLAIDWLT 186 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~ly-wsd~~~----~~I~~~~~dg~--~~~~~---~~i~~~~---------~~~p~glAVD~~~ 186 (395)
...+...||++++..+.+| .+|... -+++++.++.. ..... ..+.... ...++||++ ..+
T Consensus 17 ~~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~ 95 (326)
T PF13449_consen 17 IPFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPD 95 (326)
T ss_pred CccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecC
Confidence 4567789999996444433 334332 23777666541 10010 1111111 127889999 569
Q ss_pred CeEEEEeCCC------CeEEEEECCCCceEEE-EecC-------------CCCceeEEEeCCCCeEEEEe
Q psy13629 187 EKLYWTDSET------NKLEVSSLDGKKRKVL-YWED-------------IDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 187 ~~LYwtd~~~------~~I~v~~ldg~~~~~l-~~~~-------------~~~P~~iavdp~~g~LYwtd 236 (395)
+.+||++... .+|.+++++|...+.+ +... -.-..+||+.|+++.||..-
T Consensus 96 g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 96 GSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred CCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 9999999999 9999999999876554 2221 12356899999988788664
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.12 Score=51.37 Aligned_cols=164 Identities=16% Similarity=0.105 Sum_probs=100.3
Q ss_pred CCeEEEEEEcCCCEEEEEECCC-------------CeEEEEEccCCCC----CceEEEEeCCCCCcceEEEecCCCeEEE
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGT-------------EMISCCTFDGNNV----GSKHNVITNGLITPDGLAIDWLTEKLYW 191 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~-------------~~I~~~~~dg~~~----~~~~~i~~~~~~~p~glAVD~~~~~LYw 191 (395)
....-|.|++++ +||++=... ++|.+...++.-. .....+..-++.+|.|++.++.++.||.
T Consensus 177 H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~ 255 (399)
T COG2133 177 HFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWT 255 (399)
T ss_pred cCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEE
Confidence 345678999988 999985443 4555555443210 1123466668899999999999999999
Q ss_pred EeCCCCeE------EEE---------------ECCCC------ceEEEEe-----cCCCCceeEEEeCCC------CeEE
Q psy13629 192 TDSETNKL------EVS---------------SLDGK------KRKVLYW-----EDIDQPRAIALVPQD------SIMF 233 (395)
Q Consensus 192 td~~~~~I------~v~---------------~ldg~------~~~~l~~-----~~~~~P~~iavdp~~------g~LY 233 (395)
++.+...+ .+. +.+|. .....+. ..-..|.|+++..-+ +.||
T Consensus 256 ~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lf 335 (399)
T COG2133 256 TEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLF 335 (399)
T ss_pred EecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEE
Confidence 99655222 111 01111 1111111 123456888887432 6888
Q ss_pred EEeeCCCCeEEEEecCCCC-cceEEEEec-CCcCceeEEEeccccEEEEeccc-eeeeeeecccc
Q psy13629 234 WTDWGEVPKIERGAMNGDP-RHRKVIVDS-TIFWPNGIAIDFNNRLLYWIDGR-LTFIEVMDYDG 295 (395)
Q Consensus 234 wtd~~~~~~I~~~~~dG~~-~~~~~lv~~-~~~~P~glalD~~~~rLYwaD~~-~~~I~~~~~dG 295 (395)
+..-+ ...+.+.+.+|.. ...+.++.. .-+.|.++++..+ +-||++|-. +.+|.++...+
T Consensus 336 V~~hg-sw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~D-Gallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 336 VGAHG-SWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPD-GALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred EEeec-ceeEEEeccCCCcceEEEEEEecCCCCcccceEECCC-CeEEEeecCCCCeEEEecCCC
Confidence 88854 5567888888831 122233332 2258999999955 556666644 66999988765
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.67 Score=48.91 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=114.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.+...+.=.....+......|+.|...++.|+-+. -+++|...++..-. +.++.......+-..+|||+.+..
T Consensus 373 KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS-LDGtVRAwDlkRYr--NfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 373 KVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS-LDGTVRAWDLKRYR--NFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred cEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee-cCCeEEeeeecccc--eeeeecCCCceeeeEEEEcCCCCE
Confidence 455555543222445566778889999998777666554 67888888887543 567777777778889999997777
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC-CCCcceEEEEecCCcCce
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN-GDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d-G~~~~~~~lv~~~~~~P~ 267 (395)
+...+...-.|.+-++.......+++..-.-..+|.++|.+..|+=..|...-||+-+--. | +..++-+.. -.-
T Consensus 450 V~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--~vEtl~i~s---dvl 524 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--TVETLEIRS---DVL 524 (893)
T ss_pred EEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc--eeeeEeecc---cee
Confidence 7666666778999999988887777544445678999999999998888755444433322 2 222222222 255
Q ss_pred eEEEeccccEEEEecc
Q psy13629 268 GIAIDFNNRLLYWIDG 283 (395)
Q Consensus 268 glalD~~~~rLYwaD~ 283 (395)
++++-+++++|-++-.
T Consensus 525 ~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 525 AVSFRPDGKELAVATL 540 (893)
T ss_pred EEEEcCCCCeEEEEEe
Confidence 6677777888877753
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.4 Score=43.78 Aligned_cols=183 Identities=15% Similarity=0.172 Sum_probs=98.9
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEE----cCCC---EEEEEECCC--CeEEEEEccCCCCCceEEE------EeCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYY----YKKS---MVCWTDHGT--EMISCCTFDGNNVGSKHNV------ITNG 173 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d----~~~~---~lywsd~~~--~~I~~~~~dg~~~~~~~~i------~~~~ 173 (395)
.+.+++++| .....+. .++++.+|.- ..++ .+..++..+ ++|..+.++.... ....+ +...
T Consensus 79 GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g-~L~~v~~~~~p~~~~ 154 (381)
T PF02333_consen 79 GLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG-ELTDVTDPAAPIATD 154 (381)
T ss_dssp EEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT-EEEE-CBTTC-EE-S
T ss_pred CEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC-cceEcCCCCcccccc
Confidence 678899988 4444332 3556655542 2233 346667543 5666666654211 11222 1234
Q ss_pred CCCcceEEE--ecCCCeEEEE-eCCCCeEEEEECC--CC--ceEEEEe--cCCCCceeEEEeCCCCeEEEEeeCCCCeEE
Q psy13629 174 LITPDGLAI--DWLTEKLYWT-DSETNKLEVSSLD--GK--KRKVLYW--EDIDQPRAIALVPQDSIMFWTDWGEVPKIE 244 (395)
Q Consensus 174 ~~~p~glAV--D~~~~~LYwt-d~~~~~I~v~~ld--g~--~~~~l~~--~~~~~P~~iavdp~~g~LYwtd~~~~~~I~ 244 (395)
+..|.|+++ +..++.+|.. ....+.+..+.|. +. ..-.++. ....+|.||++|...++||+.+ . ..-|+
T Consensus 155 ~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgE-E-~~GIW 232 (381)
T PF02333_consen 155 LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGE-E-DVGIW 232 (381)
T ss_dssp SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEE-T-TTEEE
T ss_pred cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEec-C-ccEEE
Confidence 566889987 5566777654 3334667666653 32 2222222 3456899999999999999998 2 45688
Q ss_pred EEecCCCCc-ceEEEEec---CC-cCceeEEEec---cccEEEEeccceeeeeeeccccce
Q psy13629 245 RGAMNGDPR-HRKVIVDS---TI-FWPNGIAIDF---NNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 245 ~~~~dG~~~-~~~~lv~~---~~-~~P~glalD~---~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
+.+.+-... .++.+... ++ .-.-||+|-+ ..+.|.+++.+.++..+.+..+..
T Consensus 233 ~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 233 RYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 888763223 33333221 12 3567888853 235788888888777666665543
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=96.03 E-value=1 Score=46.01 Aligned_cols=133 Identities=10% Similarity=0.057 Sum_probs=93.4
Q ss_pred EEEEeeCCC-CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSR-PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~-~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.|++.++.. ......+........+++|++.+ .+..+...++.|...+..+. .....+...-....++++.. .+
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~---~~~~~l~~hs~~is~~~f~~-d~ 300 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTG---ECVRKLKGHSDGISGLAFSP-DG 300 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCC---eEEEeeeccCCceEEEEECC-CC
Confidence 778888833 23455666777788999999998 77778878999999999874 33444445556788999997 55
Q ss_pred eEEEEeCCCCeEEEEECCCCce--EEEEecCCCCc---eeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKR--KVLYWEDIDQP---RAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~--~~l~~~~~~~P---~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
++.++....+.|.+.|+.+... ...+ .....+ +.+.++|...+|+..- . ...+...++.
T Consensus 301 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~~-~-d~~~~~w~l~ 364 (456)
T KOG0266|consen 301 NLLVSASYDGTIRVWDLETGSKLCLKLL-SGAENSAPVTSVQFSPNGKYLLSAS-L-DRTLKLWDLR 364 (456)
T ss_pred CEEEEcCCCccEEEEECCCCceeeeecc-cCCCCCCceeEEEECCCCcEEEEec-C-CCeEEEEEcc
Confidence 5556667799999999998883 3333 334444 8888888777765443 2 3345555555
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.4 Score=41.46 Aligned_cols=190 Identities=11% Similarity=0.105 Sum_probs=127.3
Q ss_pred ccCCCCcee------EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC
Q psy13629 99 KLQPDGAYL------LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN 172 (395)
Q Consensus 99 ~~~~~~~~~------~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~ 172 (395)
..++|+-|+ ..+|..|+.+......+....+...+++|++++++|. +...+++|...+.-|. ..-++...
T Consensus 70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qiv-SGSrDkTiklwnt~g~---ck~t~~~~ 145 (315)
T KOG0279|consen 70 VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIV-SGSRDKTIKLWNTLGV---CKYTIHED 145 (315)
T ss_pred EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceee-cCCCcceeeeeeeccc---EEEEEecC
Confidence 445555554 2678889888555667788888999999999887764 7778899999988875 33333333
Q ss_pred C-CCCcceEEEecCCCeEEEE-eCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 173 G-LITPDGLAIDWLTEKLYWT-DSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 173 ~-~~~p~glAVD~~~~~LYwt-d~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
. -.-...+.+.|...+.|.. -+....+.+-|+++-..+.-....-...+.++++|+ |.|.-+- |+...++..+++-
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD-GslcasG-gkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD-GSLCASG-GKDGEAMLWDLNE 223 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC-CCEEecC-CCCceEEEEEccC
Confidence 3 4557778888866455544 466788999999986665444355677899999995 4565553 5678899999985
Q ss_pred CCcceEEEEecCCcCceeEEEeccccEEEEecc-ceeeeeeeccccceeee
Q psy13629 251 DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDG-RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 251 ~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~-~~~~I~~~~~dG~~~~~ 300 (395)
.+.....+...-.+.+++.+ +| ||..+ ....|..-+++......
T Consensus 224 ---~k~lysl~a~~~v~sl~fsp--nr-ywL~~at~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 224 ---GKNLYSLEAFDIVNSLCFSP--NR-YWLCAATATSIKIWDLESKAVVE 268 (315)
T ss_pred ---CceeEeccCCCeEeeEEecC--Cc-eeEeeccCCceEEEeccchhhhh
Confidence 23333334555567777763 23 55543 33445555666554443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=2.4 Score=43.86 Aligned_cols=183 Identities=10% Similarity=-0.038 Sum_probs=103.8
Q ss_pred EEEEeeCCCCC-------ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEE
Q psy13629 109 DIRIANLSRPL-------KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~-------~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glA 181 (395)
.|++.++.... ....+......+..++|++..+.++++...++.|..++++.. .....+........+++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg---~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG---KAVEVIKCHSDQITSLE 175 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC---eEEEEEcCCCCceEEEE
Confidence 56666664311 122334455678899999987667777778899999998864 22223333344578888
Q ss_pred EecCCCeEEEEeCCCCeEEEEECCCCceE-EEEecCCCCceeEEEeCCCCeEEEEeeC--CCCeEEEEecCCCCcceEEE
Q psy13629 182 IDWLTEKLYWTDSETNKLEVSSLDGKKRK-VLYWEDIDQPRAIALVPQDSIMFWTDWG--EVPKIERGAMNGDPRHRKVI 258 (395)
Q Consensus 182 VD~~~~~LYwtd~~~~~I~v~~ldg~~~~-~l~~~~~~~P~~iavdp~~g~LYwtd~~--~~~~I~~~~~dG~~~~~~~l 258 (395)
+.+ .+.+.++-...+.|.+.|+...... .+..........+...+..+.++-+-+. ....|...++... ......
T Consensus 176 ~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~-~~p~~~ 253 (493)
T PTZ00421 176 WNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM-ASPYST 253 (493)
T ss_pred EEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC-CCceeE
Confidence 887 4556667777899999998754433 2221222233455666666666544322 2345777776531 111111
Q ss_pred EecCCc-CceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 259 VDSTIF-WPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 259 v~~~~~-~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
...+.. ...-..+|.+++.||.+-...+.|...++...
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 111111 11112456667777776545677777766543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.3 Score=44.57 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=94.9
Q ss_pred EEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCce
Q psy13629 142 MVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPR 221 (395)
Q Consensus 142 ~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~ 221 (395)
.+...+.....+..++.+|+ ....+...+.....++++..+..+-.++ ....|.+.+++....+.+-.....-..
T Consensus 373 ~~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngnv~~idkS~~~lIt 447 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGG----EVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGNVRLIDKSEYGLIT 447 (668)
T ss_pred ceEEeccCCceEEEEecCCc----eEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCCeeEecccccceeE
Confidence 34444434558888888885 2456677899999999999777777766 467899999999888777656666788
Q ss_pred eEEEeCCCCeEEEEeeC--CCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEec
Q psy13629 222 AIALVPQDSIMFWTDWG--EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 222 ~iavdp~~g~LYwtd~~--~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD 282 (395)
+++.+|..+++-.+-.. ....|...+|+| ... .-+++...+-..=|+|++++.||+..
T Consensus 448 df~~~~nsr~iAYafP~gy~tq~Iklydm~~--~Ki-y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 448 DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG--GKI-YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEEcCCceeEEEecCcceeeeeEEEEecCC--CeE-EEecCCcccccCcccCCCCcEEEEEe
Confidence 99999988877665432 246799999998 222 22333222233347999999999985
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.1 Score=42.88 Aligned_cols=168 Identities=13% Similarity=0.075 Sum_probs=101.4
Q ss_pred cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEcc-----CCCCCceEEEEeC------CCCCcceEEEecCCCe-
Q psy13629 121 PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-----GNNVGSKHNVITN------GLITPDGLAIDWLTEK- 188 (395)
Q Consensus 121 ~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~d-----g~~~~~~~~i~~~------~~~~p~glAVD~~~~~- 188 (395)
....-+++.++-||++.+.+ .++++|..++....++.+ |... .-++... ....|+|+++......
T Consensus 15 A~~tDp~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~--~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~ 91 (336)
T TIGR03118 15 AQIVDPGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQD--PLVVVIPAPPPLAAEGTPTGQVFNGSDTFV 91 (336)
T ss_pred ccccCccccccceeEecCCC-CEEEecCCcceEEeecCCcccccCCcc--ceEEEecCCCCCCCCCCccEEEEeCCCceE
Confidence 44566789999999999854 688888888887777776 4321 1122222 2357999998754332
Q ss_pred ------------EEEEeCCCCeEEEEECCC--C---ceEEEEec--CCCCceeEEEeCC--CCeEEEEeeCCCCeEEEEe
Q psy13629 189 ------------LYWTDSETNKLEVSSLDG--K---KRKVLYWE--DIDQPRAIALVPQ--DSIMFWTDWGEVPKIERGA 247 (395)
Q Consensus 189 ------------LYwtd~~~~~I~v~~ldg--~---~~~~l~~~--~~~~P~~iavdp~--~g~LYwtd~~~~~~I~~~~ 247 (395)
||.+ +.++|.-.+..- . ...+++.. ....=+|+|+... ..+||-+|.. +.+|.+.+
T Consensus 92 vt~~g~~~~a~Fif~t--EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~-~g~IDVFd 168 (336)
T TIGR03118 92 VSGEGITGPSRFLFVT--EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR-QGRIDVFK 168 (336)
T ss_pred EcCCCcccceeEEEEe--CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC-CCceEEec
Confidence 3333 345565554322 2 11123322 2445578888754 6799999975 78888775
Q ss_pred cCCCCcceEEEEe-----cC---CcCceeEEEeccccEEEEecc-------------ceeeeeeeccccceeee
Q psy13629 248 MNGDPRHRKVIVD-----ST---IFWPNGIAIDFNNRLLYWIDG-------------RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 248 ~dG~~~~~~~lv~-----~~---~~~P~glalD~~~~rLYwaD~-------------~~~~I~~~~~dG~~~~~ 300 (395)
-+- +++.+. .. -.-|.++.- .+++||++-+ ....|.+.+++|.-.+.
T Consensus 169 ~~f----~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r 236 (336)
T TIGR03118 169 GSF----RPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRR 236 (336)
T ss_pred Ccc----ccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEE
Confidence 432 211111 11 123555543 4789999843 23578888999987765
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.88 Score=45.61 Aligned_cols=195 Identities=7% Similarity=0.015 Sum_probs=120.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
-++++|.....-...+........-.-|.+..+.++.+...++.+...++++. ..+.-+...-...+..++-+.+++
T Consensus 91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---YVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---EEEEEecCCcceeEeeccccCCCe
Confidence 45667743311122233344456677899999999999877777777888875 333334444567889999999999
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe--cCCcCc
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD--STIFWP 266 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~--~~~~~P 266 (395)
|.+|-+..+.|...+.......+ ..-+-..|-.-++--.+|-++.+. | .+.|...++-+ +++.+.. .+..--
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v-~elnhg~pVe~vl~lpsgs~iasA-g-Gn~vkVWDl~~---G~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRV-VELNHGCPVESVLALPSGSLIASA-G-GNSVKVWDLTT---GGQLLTSMFNHNKTV 241 (487)
T ss_pred EEEecCCCceEEEEEeccCCcee-EEecCCCceeeEEEcCCCCEEEEc-C-CCeEEEEEecC---CceehhhhhcccceE
Confidence 99999999999999987764322 223344455444444567777777 3 56788888874 2333333 244556
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccceeee--eeecee-eeeeeec
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV--TSLGHI-NLELYCN 313 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~--t~~g~~-~i~Lf~d 313 (395)
+.|.+..++.||+-+-- +.+|...++..-.... .-.+.+ +++++++
T Consensus 242 TcL~l~s~~~rLlS~sL-D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~d 290 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSL-DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPD 290 (487)
T ss_pred EEEEeecCCceEeeccc-ccceEEEEccceEEEEeeecccceeeEEecCC
Confidence 67777766667765532 2344444433333322 222333 7777753
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.24 Score=49.35 Aligned_cols=138 Identities=16% Similarity=0.093 Sum_probs=86.4
Q ss_pred EEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCe------EEEEEccCCCC----------------C---
Q psy13629 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEM------ISCCTFDGNNV----------------G--- 164 (395)
Q Consensus 110 I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~------I~~~~~dg~~~----------------~--- 164 (395)
+..++.+. ....+..-++.++.|++|++.++.||.++.+... +.+. .+|.+. .
T Consensus 221 ~~~~d~p~-~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i-~~G~nYGWP~~~~G~~~~g~~~~~~~ 298 (399)
T COG2133 221 IIPADNPF-PNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSI-RPGKNYGWPYAYFGQNYDGRAIPDGT 298 (399)
T ss_pred ccccCCCC-CCcceEEeccCCccceeecCCCCcEEEEecCCCcccCccccccc-ccCCccCCceeccCcccCccccCCCc
Confidence 34445555 4456778889999999999999999999976622 2221 111100 0
Q ss_pred ce-----EEEEeCCCCCcceEEEecCC------CeEEEEeCCCCeEEEEECCCCce---EEEEec-CCCCceeEEEeCCC
Q psy13629 165 SK-----HNVITNGLITPDGLAIDWLT------EKLYWTDSETNKLEVSSLDGKKR---KVLYWE-DIDQPRAIALVPQD 229 (395)
Q Consensus 165 ~~-----~~i~~~~~~~p~glAVD~~~------~~LYwtd~~~~~I~v~~ldg~~~---~~l~~~-~~~~P~~iavdp~~ 229 (395)
.. ..........|.||++=.-+ +.+|+.....-.+.+.+++|..+ +..+.. ....|+++++.+ +
T Consensus 299 ~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~-D 377 (399)
T COG2133 299 VVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAP-D 377 (399)
T ss_pred ccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECC-C
Confidence 00 00111122456788885322 67888876666788899999833 334432 236999999998 5
Q ss_pred CeEEEEeeCCCCeEEEEecCC
Q psy13629 230 SIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 230 g~LYwtd~~~~~~I~~~~~dG 250 (395)
|.||++|-....+|.|+..++
T Consensus 378 Gallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 378 GALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred CeEEEeecCCCCeEEEecCCC
Confidence 567777634466899987765
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=95.43 E-value=2.2 Score=39.59 Aligned_cols=135 Identities=12% Similarity=0.106 Sum_probs=93.8
Q ss_pred EEEEEeeCCCCCc-cEE-ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLK-PVT-IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~-~~~-~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
..||.+|+..... ... +....+++.++.|..+++.+| +..+++++...++..- ..+...... .-.+.+.+.+.
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~---~~qR~~~~~-spVn~vvlhpn 135 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSL---SCQRNYQHN-SPVNTVVLHPN 135 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCc---ccchhccCC-CCcceEEecCC
Confidence 4788899877322 333 334558999999998877766 6668899998888863 222333322 45678899998
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceE-EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRK-VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~-~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
...|+..|. ++.|.+-|+....+. .++.+.......++++|+..+|--.+ ...+-+..+|-+
T Consensus 136 QteLis~dq-sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n--nkG~cyvW~l~~ 198 (311)
T KOG0315|consen 136 QTELISGDQ-SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN--NKGNCYVWRLLN 198 (311)
T ss_pred cceEEeecC-CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec--CCccEEEEEccC
Confidence 889988885 578999999877444 56666778889999999877765443 234455555533
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=95.27 E-value=3.7 Score=43.60 Aligned_cols=174 Identities=9% Similarity=-0.029 Sum_probs=109.0
Q ss_pred EEEEeeCCCCCccEEe-cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~-~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.+.+..+.. +.++.- .....+...++|++++. +..+...+++|..++...+ .--....+.-...+++.+.- .+
T Consensus 331 QLlVweWqs-EsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sg---fC~vTFteHts~Vt~v~f~~-~g 404 (893)
T KOG0291|consen 331 QLLVWEWQS-ESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSG---FCFVTFTEHTSGVTAVQFTA-RG 404 (893)
T ss_pred eEEEEEeec-cceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCc---eEEEEeccCCCceEEEEEEe-cC
Confidence 344455544 223222 23477899999998765 5567888999999998764 22233334445677777764 45
Q ss_pred eEEEEeCCCCeEEEEECCC-CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 188 KLYWTDSETNKLEVSSLDG-KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg-~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
+.-++.+-.+++...|+.- ++-+++....-.+-..+|+||.+..++-.+ -+.-.|+..++.. ....-+++.+-+-.
T Consensus 405 ~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~-~d~F~IfvWS~qT--GqllDiLsGHEgPV 481 (893)
T KOG0291|consen 405 NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA-QDSFEIFVWSVQT--GQLLDILSGHEGPV 481 (893)
T ss_pred CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec-cceEEEEEEEeec--CeeeehhcCCCCcc
Confidence 5555666667777666653 333455545556667899999766665544 3466788888875 33444445554556
Q ss_pred eeEEEeccccEEEEeccceeeeeeec
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~ 292 (395)
.+|.+++.+..|+-+-| +++|..=+
T Consensus 482 s~l~f~~~~~~LaS~SW-DkTVRiW~ 506 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSW-DKTVRIWD 506 (893)
T ss_pred eeeEEccccCeEEeccc-cceEEEEE
Confidence 78899988887776655 34554333
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.39 Score=46.73 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=85.5
Q ss_pred CCeEEEEeC----CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEee-------C-CCCeEEEEecCCCCc
Q psy13629 186 TEKLYWTDS----ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW-------G-EVPKIERGAMNGDPR 253 (395)
Q Consensus 186 ~~~LYwtd~----~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~-------~-~~~~I~~~~~dG~~~ 253 (395)
.+++|+.|. ..++++++|.+.....-.+..++ .++ ++++|+++.+|.++- | ....|+..+...-..
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~-~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~ 79 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGF-LGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP 79 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEES-SEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred CcEEEEECCccccccceEEEEECCCCcEEEEeeccc-CCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc
Confidence 367888884 34688888877766655553333 344 778999999998662 1 124466666654211
Q ss_pred ceEEEEecC-----CcCceeEEEeccccEEEEeccc-eeeeeeeccccceeeeeeecee-eeeeeeccCCccccceeeee
Q psy13629 254 HRKVIVDST-----IFWPNGIAIDFNNRLLYWIDGR-LTFIEVMDYDGYVRLVTSLGHI-NLELYCNVFPKTCENFMKHC 326 (395)
Q Consensus 254 ~~~~lv~~~-----~~~P~glalD~~~~rLYwaD~~-~~~I~~~~~dG~~~~~t~~g~~-~i~Lf~d~ap~t~~nf~~l~ 326 (395)
..++.+-.. ...++-+++..+++++|+.+.. ...|.++|+....... ...-| ...+| |..-.+|..+|
T Consensus 80 ~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~-ei~~PGC~~iy----P~~~~~F~~lC 154 (342)
T PF06433_consen 80 TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG-EIDTPGCWLIY----PSGNRGFSMLC 154 (342)
T ss_dssp EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE-EEEGTSEEEEE----EEETTEEEEEE
T ss_pred cceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceee-eecCCCEEEEE----ecCCCceEEEe
Confidence 222222221 3467778898889999999854 4789999998877754 22224 44456 33446899999
Q ss_pred ccce
Q psy13629 327 ENGY 330 (395)
Q Consensus 327 ~~g~ 330 (395)
.+|-
T Consensus 155 ~DGs 158 (342)
T PF06433_consen 155 GDGS 158 (342)
T ss_dssp TTSC
T ss_pred cCCc
Confidence 8874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1984|consensus | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.014 Score=61.88 Aligned_cols=62 Identities=32% Similarity=0.553 Sum_probs=54.6
Q ss_pred ccccchhhHHHhhhhcccccceeeeeecceeeeeeecCCCCC---CCCccCcccccccCCCCcee
Q psy13629 46 PEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSD---EMPVQERCSFEKLQPDGAYL 107 (395)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Li~~~~~~~~~~---~~~~~~~C~~~~~~~~~~~~ 107 (395)
.|+++|+|.+++..+.+|+++..+.+|||+|+|.+++.++.. ..|...+|+.|..+-.++|+
T Consensus 831 ~~~~~DdRi~~~~~v~sl~v~~~~~~~YPrl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYl 895 (1007)
T KOG1984|consen 831 QEIRTDDRIYQLQLVTSLSVEQLMPFFYPRLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYL 895 (1007)
T ss_pred cccccchhHHHHHHhhcccHHhhhhhhccceeeeeccccccccccccccceecchhhccCCceEE
Confidence 789999999999999999999999999999999999988876 46777777777777667776
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.13 Score=39.81 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=34.0
Q ss_pred EEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 167 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 167 ~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
..++..++..|+||++|+.++.||+++...+.|.++...
T Consensus 46 ~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 46 VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 345677889999999999999999999999999988754
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.9 Score=42.85 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=76.6
Q ss_pred cCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec----CCC---eEEEEeCC--CCeEEEEECCCC-
Q psy13629 138 YKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW----LTE---KLYWTDSE--TNKLEVSSLDGK- 207 (395)
Q Consensus 138 ~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~----~~~---~LYwtd~~--~~~I~v~~ldg~- 207 (395)
+....|.-||. .+-+..++++|. ..+.+- ...++.+.|-. .++ .+..++.. .++|..+.+++.
T Consensus 66 p~kSlIigTdK-~~GL~VYdL~Gk---~lq~~~---~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~ 138 (381)
T PF02333_consen 66 PAKSLIIGTDK-KGGLYVYDLDGK---ELQSLP---VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT 138 (381)
T ss_dssp GGG-EEEEEET-TTEEEEEETTS----EEEEE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred cccceEEEEeC-CCCEEEEcCCCc---EEEeec---CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence 44455666663 456677777775 222221 23444443311 111 23556654 256666655542
Q ss_pred -ceEEE------EecCCCCceeEEEe--CCCCeEEEEeeCCCCeEEEEec--CCCCcceEEEEec--CCcCceeEEEecc
Q psy13629 208 -KRKVL------YWEDIDQPRAIALV--PQDSIMFWTDWGEVPKIERGAM--NGDPRHRKVIVDS--TIFWPNGIAIDFN 274 (395)
Q Consensus 208 -~~~~l------~~~~~~~P~~iavd--p~~g~LYwtd~~~~~~I~~~~~--dG~~~~~~~lv~~--~~~~P~glalD~~ 274 (395)
....+ +...+..|+|+++- +..|.+|..--++...++...+ ++...-.-.++.+ --.+|-|+++|-.
T Consensus 139 g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 139 GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDE 218 (381)
T ss_dssp TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETT
T ss_pred CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecc
Confidence 22222 22456789999985 5567777655444556666655 3321212223332 1347999999988
Q ss_pred ccEEEEeccceeeeeeeccc
Q psy13629 275 NRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 275 ~~rLYwaD~~~~~I~~~~~d 294 (395)
.++||+++.. .-|++.+.+
T Consensus 219 ~g~LYvgEE~-~GIW~y~Ae 237 (381)
T PF02333_consen 219 TGRLYVGEED-VGIWRYDAE 237 (381)
T ss_dssp TTEEEEEETT-TEEEEEESS
T ss_pred cCCEEEecCc-cEEEEEecC
Confidence 8999999976 458777764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=94.70 E-value=4.1 Score=38.83 Aligned_cols=173 Identities=9% Similarity=-0.001 Sum_probs=108.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
+||-+++.............+.+.+|...|.+ ..|.+...+++|+-+++.-. +-+.++. +..+.-.|.|+ .|.
T Consensus 81 tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~---~cqg~l~--~~~~pi~AfDp-~GL 153 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVK---KCQGLLN--LSGRPIAAFDP-EGL 153 (311)
T ss_pred ceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCC---CCceEEe--cCCCcceeECC-CCc
Confidence 78888887734344555667789999999988 57889888999999999843 2233332 34556689998 677
Q ss_pred EEEEeCCCCeEEEEECCC----CceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe-cCCCCcceEEEEec-
Q psy13629 189 LYWTDSETNKLEVSSLDG----KKRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA-MNGDPRHRKVIVDS- 261 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg----~~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~-~dG~~~~~~~lv~~- 261 (395)
++.+-.+.+.|..+|+.- -...-.+. +...+-..|-++|+++.|-.+.-. ..++.++ .+| .-...+-..
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~--s~~~~lDAf~G--~~~~tfs~~~ 229 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA--SFIYLLDAFDG--TVKSTFSGYP 229 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC--CcEEEEEccCC--cEeeeEeecc
Confidence 777766666899988753 23333332 346677889999999999988833 3344444 466 322222221
Q ss_pred -CCcCceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 262 -TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 262 -~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
....|-+-++.++++.+.-.. .+++|..-++
T Consensus 230 ~~~~~~~~a~ftPds~Fvl~gs-~dg~i~vw~~ 261 (311)
T KOG1446|consen 230 NAGNLPLSATFTPDSKFVLSGS-DDGTIHVWNL 261 (311)
T ss_pred CCCCcceeEEECCCCcEEEEec-CCCcEEEEEc
Confidence 222343444555555544443 3344544443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=7 Score=42.88 Aligned_cols=163 Identities=8% Similarity=-0.064 Sum_probs=91.8
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCC----CCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEE
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN----VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVS 202 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~----~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~ 202 (395)
....+.+++|++.++.|. +...++.|..++.+... ................+++.++..+....+-...+.|.+.
T Consensus 482 ~~~~V~~i~fs~dg~~la-tgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFA-TAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCcEEEEEECCCCCEEE-EEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 455688899999876544 55578888888865310 0000111122223456666665445555666678899999
Q ss_pred ECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEec
Q psy13629 203 SLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 203 ~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD 282 (395)
++........+........+++++|.++.+++|- +....|...++... .....+ ... .....+.+...++.++.+-
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg-s~Dg~v~iWd~~~~-~~~~~~-~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASG-SDDGSVKLWSINQG-VSIGTI-KTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEE-cCCCEEEEEECCCC-cEEEEE-ecC-CCeEEEEEeCCCCCEEEEE
Confidence 9887655444434456678999998777666665 43566777777641 111122 111 1233444432334444444
Q ss_pred cceeeeeeeccc
Q psy13629 283 GRLTFIEVMDYD 294 (395)
Q Consensus 283 ~~~~~I~~~~~d 294 (395)
..++.|...++.
T Consensus 637 s~dg~I~iwD~~ 648 (793)
T PLN00181 637 SADHKVYYYDLR 648 (793)
T ss_pred eCCCeEEEEECC
Confidence 445556555543
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=94.45 E-value=4.3 Score=39.15 Aligned_cols=193 Identities=13% Similarity=0.034 Sum_probs=110.8
Q ss_pred EEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEc-c---------CC-C-CCceEEEEeCCCCCc
Q psy13629 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF-D---------GN-N-VGSKHNVITNGLITP 177 (395)
Q Consensus 110 I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~-d---------g~-~-~~~~~~i~~~~~~~p 177 (395)
+..+..+.++........+.++.||+.+. +.||.+.. ..|+++.. + +. . .--.+.....+--..
T Consensus 30 L~~ig~~~~g~l~~~~r~F~r~MGl~~~~--~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidi 105 (335)
T TIGR03032 30 LFFIGLQPNGELDVFERTFPRPMGLAVSP--QSLTLGTR--YQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDA 105 (335)
T ss_pred EEEEEeCCCCcEEEEeeccCccceeeeeC--CeEEEEEc--ceeEEcccccccccccccCCCCCeEEeeeeeeeccCcch
Confidence 33444443345667777889999998864 66888753 35665511 1 10 0 000112222344567
Q ss_pred ceEEEecCCCeEEEEeCCCCeEEEEECCCCce--------EEEEecCCCCceeEEEeCCCCeEEEEeeCCC--CeEEEEe
Q psy13629 178 DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR--------KVLYWEDIDQPRAIALVPQDSIMFWTDWGEV--PKIERGA 247 (395)
Q Consensus 178 ~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~--------~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~--~~I~~~~ 247 (395)
.+||+ .++.+++.+..-+.+...+.+-+.. ..+..++-=+-||+|+.. .+--|+|..+.. +.-.|-+
T Consensus 106 Hdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~yVTa~~~sD~~~gWR~~ 182 (335)
T TIGR03032 106 HDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD-GEPRYVTALSQSDVADGWREG 182 (335)
T ss_pred hheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC-CeEEEEEEeeccCCccccccc
Confidence 78888 4778888887767777666655432 222223445678999973 556787765421 1222222
Q ss_pred cCCCCc----ceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccc-cceeeeee-ecee-eeeee
Q psy13629 248 MNGDPR----HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD-GYVRLVTS-LGHI-NLELY 311 (395)
Q Consensus 248 ~dG~~~----~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d-G~~~~~t~-~g~~-~i~Lf 311 (395)
....+. ....++.+++..|.+--.. +++||++|+..+.+..++.+ |....+.. -|.+ +++..
T Consensus 183 ~~~gG~vidv~s~evl~~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~ 251 (335)
T TIGR03032 183 RRDGGCVIDIPSGEVVASGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA 251 (335)
T ss_pred ccCCeEEEEeCCCCEEEcCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee
Confidence 211000 0012333456677776665 79999999999999999997 77666632 2333 55544
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.43 E-value=1.5 Score=44.07 Aligned_cols=63 Identities=11% Similarity=0.255 Sum_probs=34.3
Q ss_pred CceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEE----EecC--------------CcCceeEEEeccccEEEE
Q psy13629 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVI----VDST--------------IFWPNGIAIDFNNRLLYW 280 (395)
Q Consensus 219 ~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~l----v~~~--------------~~~P~glalD~~~~rLYw 280 (395)
-+.+|.|+.+.++||++.|. ...|...++... .+.+.. +... .+.|+-|.+..+++||||
T Consensus 313 LitDI~iSlDDrfLYvs~W~-~GdvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWL-HGDVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ----EEE-TTS-EEEEEETT-TTEEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred ceEeEEEccCCCEEEEEccc-CCcEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 46899999999999999998 566777777652 222221 1111 235888999999999999
Q ss_pred ecc
Q psy13629 281 IDG 283 (395)
Q Consensus 281 aD~ 283 (395)
+.+
T Consensus 391 TnS 393 (461)
T PF05694_consen 391 TNS 393 (461)
T ss_dssp E--
T ss_pred Eee
Confidence 985
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.14 Score=39.68 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe
Q psy13629 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA 247 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~ 247 (395)
|+..+++. +++..|+||+++|.+++||+++.. ...|....
T Consensus 43 ~~~~~~va-~g~~~aNGI~~s~~~k~lyVa~~~-~~~I~vy~ 82 (86)
T PF01731_consen 43 GKEVKVVA-SGFSFANGIAISPDKKYLYVASSL-AHSIHVYK 82 (86)
T ss_pred CCEeEEee-ccCCCCceEEEcCCCCEEEEEecc-CCeEEEEE
Confidence 34444444 789999999999999999999954 45555544
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.23 Score=32.26 Aligned_cols=41 Identities=24% Similarity=0.163 Sum_probs=32.3
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEe
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALV 226 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavd 226 (395)
.++.||.++...++|.+.|+.......-+ .....|++|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i-~vg~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATI-PVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEE-ECCCCCceEEeC
Confidence 46789999999999999998765555445 346889999875
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=94.33 E-value=4.4 Score=40.76 Aligned_cols=120 Identities=12% Similarity=0.069 Sum_probs=83.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+++.+.+| .....+-..-+.+.+|-|.-.+..|.-.+ .++++..++.-.. +....-.+.+..++.|||.+..
T Consensus 258 ~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~-vD~ttilwd~~~g-----~~~q~f~~~s~~~lDVdW~~~~ 330 (524)
T KOG0273|consen 258 EARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGG-VDGTTILWDAHTG-----TVKQQFEFHSAPALDVDWQSND 330 (524)
T ss_pred EEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEecc-CCccEEEEeccCc-----eEEEeeeeccCCccceEEecCc
Confidence 677788777 55555666677788888887777776555 4555544444321 1112223455568999999999
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
=|.+....+.|.||.++++....-+...-...++|-.+|....| -|.
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LL-aS~ 377 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLL-ASC 377 (524)
T ss_pred eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceE-EEe
Confidence 99999989999999999988775554566778899999855444 444
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.23 E-value=2.4 Score=42.97 Aligned_cols=166 Identities=11% Similarity=0.075 Sum_probs=94.2
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC---CeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT---EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~---~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.++...|.++ .....+.........-+|.+.+.++.+..... .+|+..+++.+ ....++.- ...-..-++.+
T Consensus 173 ~~l~~~D~dg-~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---~~~~i~~~-~g~~~~P~fsp 247 (425)
T COG0823 173 YELALGDYDG-YNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---KRPVILNF-NGNNGAPAFSP 247 (425)
T ss_pred ceEEEEccCC-cceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCC---ccceeecc-CCccCCccCCC
Confidence 3556666665 44444444444445556777777666554433 35888888875 33334331 12223345556
Q ss_pred CCCeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEE-EeeCCCCeEEEEecCCCCcceEEEEec
Q psy13629 185 LTEKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFW-TDWGEVPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 185 ~~~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYw-td~~~~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
.+++|-++-. +...|+++|++++....+. +....-..=.+.|+..+|++ +|.++.+.|++.+++| ...+.+...
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g--~~~~riT~~ 324 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG--SQVTRLTFS 324 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCcceecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC--CceeEeecc
Confidence 6677777753 3557999999999866644 22221124456777777655 5555789999999999 444333332
Q ss_pred CCcCceeEEEeccccEEEEec
Q psy13629 262 TIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD 282 (395)
. +...--.+.+++++|-+..
T Consensus 325 ~-~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 325 G-GGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred C-CCCcCccCCCCCCEEEEEe
Confidence 2 1111223444555554444
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=9.1 Score=39.62 Aligned_cols=124 Identities=7% Similarity=-0.056 Sum_probs=81.2
Q ss_pred ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCC----ceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeE
Q psy13629 124 IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG----SKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKL 199 (395)
Q Consensus 124 ~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~----~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I 199 (395)
+....+.+.+++|++..+.+..+...++.|..+++...... .....+...-..+..+++.+..+++.++-...+.|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 44456678999999854445666668899999888643210 11112223335577888888766777787788999
Q ss_pred EEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 200 EVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
.+.|+........+.......++|+++|....|.-+. ....|...++.
T Consensus 151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs--~Dg~IrIwD~r 198 (493)
T PTZ00421 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS--KDKKLNIIDPR 198 (493)
T ss_pred EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec--CCCEEEEEECC
Confidence 9999987655544433455678999998665554333 34556666664
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.82 Score=47.61 Aligned_cols=63 Identities=13% Similarity=0.330 Sum_probs=45.7
Q ss_pred CCCCcceEEEecCCCeEEEEeCCC-------------------CeEEEEECCCC-------ceEEEEe------------
Q psy13629 173 GLITPDGLAIDWLTEKLYWTDSET-------------------NKLEVSSLDGK-------KRKVLYW------------ 214 (395)
Q Consensus 173 ~~~~p~glAVD~~~~~LYwtd~~~-------------------~~I~v~~ldg~-------~~~~l~~------------ 214 (395)
.+.+|+|+++++.++.+|++-... ++|.+..+++. ....++.
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 457899999999999999997443 38999988875 2222221
Q ss_pred -----cCCCCceeEEEeCCCCeEEEEe
Q psy13629 215 -----EDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 215 -----~~~~~P~~iavdp~~g~LYwtd 236 (395)
..+..|-.|++|+. |.|++..
T Consensus 428 ~~~~~~~f~sPDNL~~d~~-G~LwI~e 453 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPD-GNLWIQE 453 (524)
T ss_pred CcccCCCcCCCCceEECCC-CCEEEEe
Confidence 12679999999996 4565553
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=13 Score=40.85 Aligned_cols=176 Identities=7% Similarity=-0.026 Sum_probs=96.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.+++|++..+.++++...++.|..+++.... ....+ . ....+..+++....++
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~~~~-~-~~~~v~~v~~~~~~g~ 631 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SIGTI-K-TKANICCVQFPSESGR 631 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EEEEE-e-cCCCeEEEEEeCCCCC
Confidence 677788766333444455667789999998767778888788999999987542 11222 2 2234455555445577
Q ss_pred EEEEeCCCCeEEEEECCCCce-EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC--c--ceEEEEecCC
Q psy13629 189 LYWTDSETNKLEVSSLDGKKR-KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP--R--HRKVIVDSTI 263 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~-~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~--~--~~~~lv~~~~ 263 (395)
++.+-..++.|.+.++..... ...+.........+.+. ..+.|+ +- +....|...++.... . .....+..+.
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv-s~-s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~ 708 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV-SS-STDNTLKLWDLSMSISGINETPLHSFMGHT 708 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE-EE-ECCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence 777777889999999865432 22222233345666665 344443 33 223445555553100 0 1111122233
Q ss_pred cCceeEEEeccccEEEEeccceeeeeeec
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~~~I~~~~ 292 (395)
...+.+++++.++.| .+-..++.|...+
T Consensus 709 ~~i~~v~~s~~~~~l-asgs~D~~v~iw~ 736 (793)
T PLN00181 709 NVKNFVGLSVSDGYI-ATGSETNEVFVYH 736 (793)
T ss_pred CCeeEEEEcCCCCEE-EEEeCCCEEEEEE
Confidence 345667777655433 3333344454444
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=93.61 E-value=8.6 Score=38.41 Aligned_cols=165 Identities=10% Similarity=0.033 Sum_probs=106.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC--CCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN--GLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~--~~~~p~glAVD~~~ 186 (395)
.|++......+..+..........++..++.+..+.|++...-..+.-.-+|. .-+++.. .-......++++ .
T Consensus 284 ~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~----~lt~vs~~~s~v~~ts~~fHp-D 358 (506)
T KOG0289|consen 284 IIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS----QLTVVSDETSDVEYTSAAFHP-D 358 (506)
T ss_pred eEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc----EEEEEeeccccceeEEeeEcC-C
Confidence 45555544444555666677778999999999999999843333333333443 2223332 223467788887 8
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
|.||-+-..++.+...++.......-+...-.....|.+.. +||--.+.. +...|...++--. .+-+++...+....
T Consensus 359 gLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~a-dd~~V~lwDLRKl-~n~kt~~l~~~~~v 435 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAA-DDGSVKLWDLRKL-KNFKTIQLDEKKEV 435 (506)
T ss_pred ceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc-CceEEEEEe-cCCeEEEEEehhh-cccceeeccccccc
Confidence 89999988899999999876664444433445678899985 666555552 3444777777652 34555555554567
Q ss_pred eeEEEeccccEEEEe
Q psy13629 267 NGIAIDFNNRLLYWI 281 (395)
Q Consensus 267 ~glalD~~~~rLYwa 281 (395)
+.+.+|..+..|-.+
T Consensus 436 ~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIA 450 (506)
T ss_pred eeEEEcCCCCeEEee
Confidence 888899777665544
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=93.54 E-value=4.9 Score=39.16 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=83.0
Q ss_pred EecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEE
Q psy13629 123 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVS 202 (395)
Q Consensus 123 ~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~ 202 (395)
++...++=+..+|+||. +..|.+...+++|...++... .....+..-....+|+||...+-.|| +-.+...|...
T Consensus 146 Vi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlF-s~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEE-EecCCCeeEEE
Confidence 33445666789999986 778999989999999999875 22333334567899999998777776 45567889999
Q ss_pred ECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 203 SLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 203 ~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
||.-.....-.-..+...+++++.|.-+.|+ |. +....+...+|-
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~-t~-grDst~RvWDiR 265 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLV-TG-GRDSTIRVWDIR 265 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEE-ec-CCcceEEEeeec
Confidence 9865433222224577889999999877775 33 333444444554
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=12 Score=39.55 Aligned_cols=163 Identities=7% Similarity=-0.003 Sum_probs=94.5
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
.....+..++|++.+..++.+...++.|..+++.... ....+ .....+..+++++.+ .+..+....+.|.+.|+.
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~~i--~~~~~V~SlswspdG-~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQI--NMPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEEEE--ecCCcEEEEEECCCC-CEEEEEecCCEEEEEECC
Confidence 3456788999999888888887778999999998642 11122 223457788888754 455555567889999998
Q ss_pred CCceEEEEecCCCCceeEE-----EeCCCCeEEEEeeCCC--CeEEEEecCCCCcceEEEEecCCcCceeE--EEecccc
Q psy13629 206 GKKRKVLYWEDIDQPRAIA-----LVPQDSIMFWTDWGEV--PKIERGAMNGDPRHRKVIVDSTIFWPNGI--AIDFNNR 276 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~ia-----vdp~~g~LYwtd~~~~--~~I~~~~~dG~~~~~~~lv~~~~~~P~gl--alD~~~~ 276 (395)
......-+..........+ +.+..++|.-+-.... ..|...++.........+... ..+..| ..|...+
T Consensus 198 sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld--~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 198 KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID--NASAPLIPHYDESTG 275 (568)
T ss_pred CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec--CCccceEEeeeCCCC
Confidence 7554332211111111112 2255556655443321 357777766311212221111 123333 3566678
Q ss_pred EEEEeccceeeeeeecccc
Q psy13629 277 LLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 277 rLYwaD~~~~~I~~~~~dG 295 (395)
.+|.+-.+++.|...++..
T Consensus 276 ~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CEEEEEECCCeEEEEEccC
Confidence 8888877788887777643
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.7 Score=39.45 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=50.5
Q ss_pred EecCCCeEEEEeCCCCeEEEEECCCCceEEEEe------------cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 182 IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW------------EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 182 VD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~------------~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
+.|+.|.||..-+.+.+|.|.+++......-+. ...+-++|||.+|..+++|.|- -.-+.++-+.++
T Consensus 181 LE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG-K~wp~lfEVk~~ 259 (262)
T COG3823 181 LEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG-KLWPLLFEVKLD 259 (262)
T ss_pred eeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec-CcCceeEEEEec
Confidence 357889999777778899999998776655443 1245799999999999999985 224666666665
Q ss_pred C
Q psy13629 250 G 250 (395)
Q Consensus 250 G 250 (395)
+
T Consensus 260 ~ 260 (262)
T COG3823 260 E 260 (262)
T ss_pred C
Confidence 4
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=93.38 E-value=4 Score=38.19 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=100.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC-CCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-LITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~-~~~p~glAVD~~~~ 187 (395)
.|++.+... .+.+..+...+.-.-+.|.+.++.+.+.+ .++.|.-++.... +...... ....+-++-. ..+
T Consensus 88 ~ir~wd~r~-~k~~~~i~~~~eni~i~wsp~g~~~~~~~-kdD~it~id~r~~-----~~~~~~~~~~e~ne~~w~-~~n 159 (313)
T KOG1407|consen 88 TIRIWDIRS-GKCTARIETKGENINITWSPDGEYIAVGN-KDDRITFIDARTY-----KIVNEEQFKFEVNEISWN-NSN 159 (313)
T ss_pred eEEEEEecc-CcEEEEeeccCcceEEEEcCCCCEEEEec-CcccEEEEEeccc-----ceeehhcccceeeeeeec-CCC
Confidence 778887766 66666667777777789999999888877 5566666655543 1111111 2234455555 678
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
++||...+++.|.....-.-....-+...-.+...|.+||.++++-.- +....+...+.+--. =.+.+ +.+.||-
T Consensus 160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G--sADAlvSLWD~~ELi-C~R~i--sRldwpV 234 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG--SADALVSLWDVDELI-CERCI--SRLDWPV 234 (313)
T ss_pred CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeec--cccceeeccChhHhh-hheee--ccccCce
Confidence 899999899999998876544443343445677889999987765432 223445555554311 11122 2234664
Q ss_pred -eEEEeccccEEEEeccceeeeeeecc
Q psy13629 268 -GIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 268 -glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
-|.+.++++.| =+-+.++-|-.++.
T Consensus 235 RTlSFS~dg~~l-ASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 235 RTLSFSHDGRML-ASASEDHFIDIAEV 260 (313)
T ss_pred EEEEeccCccee-eccCccceEEeEec
Confidence 34555555433 22233455555553
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=93.06 E-value=9.4 Score=37.29 Aligned_cols=177 Identities=8% Similarity=0.044 Sum_probs=110.0
Q ss_pred EEEEEeeCCCCCccEEecC-CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 108 LDIRIANLSRPLKPVTIIK-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~-~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
..|++.|+.. +.....++ ......|++++...-.||... .++.|..+++..+ ....-....+.....|++.+.-
T Consensus 173 rtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlFs~g-edk~VKCwDLe~n---kvIR~YhGHlS~V~~L~lhPTl 247 (460)
T KOG0285|consen 173 RTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLFSAG-EDKQVKCWDLEYN---KVIRHYHGHLSGVYCLDLHPTL 247 (460)
T ss_pred ceeEEEEccc-CeEEEeecchhheeeeeeecccCceEEEec-CCCeeEEEechhh---hhHHHhccccceeEEEeccccc
Confidence 3788999977 45444444 667789999999998888665 7889999999875 2222234467788899998865
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
+.| +|-.....|.+-|+..+.....+...-.-...+...|.+..+|-.. ....|...++.-. ....++.. +-...
T Consensus 248 dvl-~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S--~D~tvrlWDl~ag-kt~~tlt~-hkksv 322 (460)
T KOG0285|consen 248 DVL-VTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS--HDSTVRLWDLRAG-KTMITLTH-HKKSV 322 (460)
T ss_pred eeE-EecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec--CCceEEEeeeccC-ceeEeeec-cccee
Confidence 555 5777788999999988877666533333445566666666665332 1334555555321 12222222 22345
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
..|++.+.+ .+ ++.+..+.|.+-++--.
T Consensus 323 ral~lhP~e-~~-fASas~dnik~w~~p~g 350 (460)
T KOG0285|consen 323 RALCLHPKE-NL-FASASPDNIKQWKLPEG 350 (460)
T ss_pred eEEecCCch-hh-hhccCCccceeccCCcc
Confidence 566666443 33 44455566766664333
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=93.01 E-value=12 Score=38.31 Aligned_cols=189 Identities=13% Similarity=0.022 Sum_probs=113.5
Q ss_pred EEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eCCCCCcceEEEecCCCe
Q psy13629 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 110 I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~~~~~p~glAVD~~~~~ 188 (395)
|-.++.+.......+....+.+.+|+..+++..||=.+ .++.|...+.... ....+. ...-+...+|+.+. .+.
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g---~~~~~~g~~h~nqI~~~~~~~-~~~ 376 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSG---TSDRLAGKGHTNQIKGMAASE-SGE 376 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEcCCCCEEEeec-cCceEEEEecCCc---cccccccccccceEEEEeecC-CCc
Confidence 34444443233445556788899999999988777444 7888888877643 112222 22335678888864 466
Q ss_pred EEEEeCCCCeEEEEECCCCceE--EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe-cCCCCcceEEEEecCCcC
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRK--VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA-MNGDPRHRKVIVDSTIFW 265 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~--~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~-~dG~~~~~~~lv~~~~~~ 265 (395)
|| +-...+++.+.++.+.... ..+ ....+|.++|+.+.++.+-++... .|.... ..+ .....-...
T Consensus 377 ~~-t~g~Dd~l~~~~~~~~~~t~~~~~-~lg~QP~~lav~~d~~~avv~~~~---~iv~l~~~~~------~~~~~~~y~ 445 (603)
T KOG0318|consen 377 LF-TIGWDDTLRVISLKDNGYTKSEVV-KLGSQPKGLAVLSDGGTAVVACIS---DIVLLQDQTK------VSSIPIGYE 445 (603)
T ss_pred EE-EEecCCeEEEEecccCccccccee-ecCCCceeEEEcCCCCEEEEEecC---cEEEEecCCc------ceeeccccc
Confidence 65 5556788999988654433 222 557899999999988888877633 233222 222 111112236
Q ss_pred ceeEEEeccccEEEEeccceeeeeeeccccceeee-----eeecee-eeeeeeccC
Q psy13629 266 PNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV-----TSLGHI-NLELYCNVF 315 (395)
Q Consensus 266 P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~-----t~~g~~-~i~Lf~d~a 315 (395)
|.++|+.+.+..+-+. ....+|....+.|....+ ...+.+ .++.-+|-+
T Consensus 446 ~s~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVG-GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred cceEEEcCCCCEEEEe-cccceEEEEEecCCcccceeeeecccCCceEEEECCCCc
Confidence 8899999777655444 334557777777766443 223334 555554444
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=92.87 E-value=12 Score=38.19 Aligned_cols=163 Identities=9% Similarity=0.046 Sum_probs=92.7
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
...+.+++|+|.|++.++.=+ ..+.++...+....+ ...++....-..-.-+-+=|.+++|- +-+..+.|.-++++
T Consensus 233 aHkGsIfalsWsPDs~~~~T~-SaDkt~KIWdVs~~s--lv~t~~~~~~v~dqqvG~lWqkd~lI-tVSl~G~in~ln~~ 308 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTV-SADKTIKIWDVSTNS--LVSTWPMGSTVEDQQVGCLWQKDHLI-TVSLSGTINYLNPS 308 (603)
T ss_pred CccccEEEEEECCCCceEEEe-cCCceEEEEEeeccc--eEEEeecCCchhceEEEEEEeCCeEE-EEEcCcEEEEeccc
Confidence 457789999999998876544 355666666655432 22333332221111222334444443 22334566666655
Q ss_pred CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
......++........++++.|.+.+||=.+. ...|...+... ...-+..-..+-.+..+|+.+ ..+.|| +-.-+
T Consensus 309 d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy--DG~I~~W~~~~-g~~~~~~g~~h~nqI~~~~~~-~~~~~~-t~g~D 383 (603)
T KOG0318|consen 309 DPSVLKVISGHNKSITALTVSPDGKTIYSGSY--DGHINSWDSGS-GTSDRLAGKGHTNQIKGMAAS-ESGELF-TIGWD 383 (603)
T ss_pred CCChhheecccccceeEEEEcCCCCEEEeecc--CceEEEEecCC-ccccccccccccceEEEEeec-CCCcEE-EEecC
Confidence 44444455466778899999999999986652 34555555432 133333324455578888887 324454 44446
Q ss_pred eeeeeeccccce
Q psy13629 286 TFIEVMDYDGYV 297 (395)
Q Consensus 286 ~~I~~~~~dG~~ 297 (395)
+++.++++.+..
T Consensus 384 d~l~~~~~~~~~ 395 (603)
T KOG0318|consen 384 DTLRVISLKDNG 395 (603)
T ss_pred CeEEEEecccCc
Confidence 778887764443
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.7 Score=45.30 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=66.8
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCC-------------------CeEEEEEccCCCC----CceEEEEe-----------
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGT-------------------EMISCCTFDGNNV----GSKHNVIT----------- 171 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~-------------------~~I~~~~~dg~~~----~~~~~i~~----------- 171 (395)
..+.++.++.+++.++.||++-.+. +.|+++..++... ...+.++.
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4578899999999999999985433 3799988776411 01122222
Q ss_pred ------CCCCCcceEEEecCCCeEEEEe-CCCCeE--EE--------------------EECCCCceE-EEEecCCCCce
Q psy13629 172 ------NGLITPDGLAIDWLTEKLYWTD-SETNKL--EV--------------------SSLDGKKRK-VLYWEDIDQPR 221 (395)
Q Consensus 172 ------~~~~~p~glAVD~~~~~LYwtd-~~~~~I--~v--------------------~~ldg~~~~-~l~~~~~~~P~ 221 (395)
..+.+|.+|++|+. ++|+++. ...... .- .+......+ .+......+..
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~-G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~t 505 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPD-GNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEIT 505 (524)
T ss_pred cCcccCCCcCCCCceEECCC-CCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccc
Confidence 23679999999985 5566554 333221 11 111111122 22223456778
Q ss_pred eEEEeCCCCeEEEEe
Q psy13629 222 AIALVPQDSIMFWTD 236 (395)
Q Consensus 222 ~iavdp~~g~LYwtd 236 (395)
|++++|+.+.||+.-
T Consensus 506 G~~fspDg~tlFvni 520 (524)
T PF05787_consen 506 GPCFSPDGRTLFVNI 520 (524)
T ss_pred cceECCCCCEEEEEE
Confidence 888888888888753
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=92.57 E-value=8.9 Score=35.73 Aligned_cols=177 Identities=11% Similarity=0.059 Sum_probs=111.3
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
|.||-.....+.=...+...-.+.+.|...++++.|-.. ....|..++++.++- .....+...-++...+.+...++
T Consensus 20 hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa--~~qhvRlyD~~S~np-~Pv~t~e~h~kNVtaVgF~~dgr 96 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAA--GNQHVRLYDLNSNNP-NPVATFEGHTKNVTAVGFQCDGR 96 (311)
T ss_pred ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhc--cCCeeEEEEccCCCC-CceeEEeccCCceEEEEEeecCe
Confidence 677776655422234445566778999999888776543 456788888876531 11222233336788888887666
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
-+| |.++.+.+.+-++....+...+. ...-.+.++++|..+.|+..|.. ..|...++-...-.+ .++-+..-...
T Consensus 97 WMy-TgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqs--g~irvWDl~~~~c~~-~liPe~~~~i~ 171 (311)
T KOG0315|consen 97 WMY-TGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQS--GNIRVWDLGENSCTH-ELIPEDDTSIQ 171 (311)
T ss_pred EEE-ecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCC--CcEEEEEccCCcccc-ccCCCCCccee
Confidence 665 88889999999988755555552 23556899999999999999954 445555554321333 34444444567
Q ss_pred eEEEeccccEEEEeccceeeeeeecc
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
.+++++++..|-=++. .++.++=++
T Consensus 172 sl~v~~dgsml~a~nn-kG~cyvW~l 196 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANN-KGNCYVWRL 196 (311)
T ss_pred eEEEcCCCcEEEEecC-CccEEEEEc
Confidence 7888876665544432 344444443
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=92.43 E-value=9.2 Score=40.64 Aligned_cols=173 Identities=10% Similarity=0.014 Sum_probs=108.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC-CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~-~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.+|..+++.....+....+..-.--+.|.|.+ .|++..+ +++-..+..|-. ....+....+.....+++.| +.
T Consensus 474 svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~---~PlRifaghlsDV~cv~FHP-Ns 547 (707)
T KOG0263|consen 474 SVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHN---KPLRIFAGHLSDVDCVSFHP-NS 547 (707)
T ss_pred ceeeeecccceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccC---CchhhhcccccccceEEECC-cc
Confidence 67777777644444444444434446788764 5555444 343333444443 34566777788888899998 44
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
+.-.|.+...++..-+.....+..++...-....+++++|.+.+|=-. ++...|...++.+ .........+-.-.+
T Consensus 548 ~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg--~ed~~I~iWDl~~--~~~v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 548 NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG--DEDGLIKIWDLAN--GSLVKQLKGHTGTIY 623 (707)
T ss_pred cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec--ccCCcEEEEEcCC--CcchhhhhcccCcee
Confidence 444566667788888877777777775666677899999977666322 3567788888876 222222223344567
Q ss_pred eEEEeccccEEEEeccceeeeeeec
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~ 292 (395)
.|++.. ++.+.++++.++.|..=|
T Consensus 624 SlsFS~-dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 624 SLSFSR-DGNVLASGGADNSVRLWD 647 (707)
T ss_pred EEEEec-CCCEEEecCCCCeEEEEE
Confidence 788874 455778887777765443
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=92.17 E-value=4.6 Score=38.78 Aligned_cols=123 Identities=15% Similarity=0.142 Sum_probs=77.7
Q ss_pred EEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC-----CCceEEEEe-c------CCCCceeEEEeCCCCe----
Q psy13629 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-----GKKRKVLYW-E------DIDQPRAIALVPQDSI---- 231 (395)
Q Consensus 168 ~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld-----g~~~~~l~~-~------~~~~P~~iavdp~~g~---- 231 (395)
..+...+..|.||++.+ ++.++++|..++....++.+ |.....++. . ....|.|++++...++
T Consensus 16 ~~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~ 94 (336)
T TIGR03118 16 QIVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG 94 (336)
T ss_pred cccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence 34556788999999998 67888899999999999988 433322222 1 2357999999865543
Q ss_pred ---------EEEEeeCCCCeEEEEecCCCCc---ceEEEEecC--CcCceeEEEecc--ccEEEEeccceeeeeeeccc
Q psy13629 232 ---------MFWTDWGEVPKIERGAMNGDPR---HRKVIVDST--IFWPNGIAIDFN--NRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 232 ---------LYwtd~~~~~~I~~~~~dG~~~---~~~~lv~~~--~~~P~glalD~~--~~rLYwaD~~~~~I~~~~~d 294 (395)
||.|+ ...|.-.+..-... ...+.++.. ..-=.||+|-.. +.+||-+|=..++|.+.+-.
T Consensus 95 ~g~~~~a~Fif~tE---dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 95 EGITGPSRFLFVTE---DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred CCcccceeEEEEeC---CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 66555 23343333221112 122334322 112357887744 57999999999999887533
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=92.11 E-value=4.4 Score=40.21 Aligned_cols=176 Identities=9% Similarity=-0.003 Sum_probs=107.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC-CCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-LITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~-~~~p~glAVD~~~~ 187 (395)
.++..+++++.....+.....+...++|+|.++.|-=+ .-+.+=.-.++... .+.+...+ -....+||..+ .|
T Consensus 242 tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta-sfD~tWRlWD~~tk----~ElL~QEGHs~~v~~iaf~~-DG 315 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA-SFDSTWRLWDLETK----SELLLQEGHSKGVFSIAFQP-DG 315 (459)
T ss_pred ceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec-ccccchhhcccccc----hhhHhhcccccccceeEecC-CC
Confidence 45666666644455556667788899999988766422 22332222333321 12222332 25678899987 67
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
.|-.|-+....=.+-|+....+..++..-.....+++++| +|+.--|-.+ ...+|....+.- . .-.+-.+....
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~--~--ly~ipAH~nlV 390 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRS--E--LYTIPAHSNLV 390 (459)
T ss_pred ceeeccCccchhheeecccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccc--c--ceecccccchh
Confidence 7766665554445668888888777777789999999998 7788777633 234555544433 2 11222233356
Q ss_pred eeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
..+..++..++..++.+.++++..-...+
T Consensus 391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred hheEecccCCeEEEEcccCcceeeecCCC
Confidence 67777777788888877777765444443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.83 E-value=14 Score=36.22 Aligned_cols=189 Identities=17% Similarity=0.161 Sum_probs=106.4
Q ss_pred ccCCCCcee--------EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE
Q psy13629 99 KLQPDGAYL--------LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI 170 (395)
Q Consensus 99 ~~~~~~~~~--------~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~ 170 (395)
..+.|+.+. ..+.++|+.. .++...++..+ ...+ |-..++. |.+-.+++++..+.+|... +.....
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~-~kvv~ei~~PG-C~~i-yP~~~~~-F~~lC~DGsl~~v~Ld~~G--k~~~~~ 174 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAA-KKVVGEIDTPG-CWLI-YPSGNRG-FSMLCGDGSLLTVTLDADG--KEAQKS 174 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTT-TEEEEEEEGTS-EEEE-EEEETTE-EEEEETTSCEEEEEETSTS--SEEEEE
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCC-CceeeeecCCC-EEEE-EecCCCc-eEEEecCCceEEEEECCCC--CEeEee
Confidence 566666664 4889999987 45443333322 3333 4333444 5566789999999998432 111111
Q ss_pred eCCC---CCc--ceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCC---------CCce---eEEEeCCCCeEE
Q psy13629 171 TNGL---ITP--DGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI---------DQPR---AIALVPQDSIMF 233 (395)
Q Consensus 171 ~~~~---~~p--~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~---------~~P~---~iavdp~~g~LY 233 (395)
..-+ ..| +.=+++-.++.+||.. ..+.|+.+++.|...+..-.-.+ =.|- -+|+++..++||
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~S-y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVS-YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEB-TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEe-cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 1111 111 1223445677899976 46899999999987554322111 1132 389999999999
Q ss_pred EEe-----eC-C--CCeEEEEecCCCCcceEEEEecCCc-CceeEEEecccc-EEEEeccceeeeeeecc-cccee
Q psy13629 234 WTD-----WG-E--VPKIERGAMNGDPRHRKVIVDSTIF-WPNGIAIDFNNR-LLYWIDGRLTFIEVMDY-DGYVR 298 (395)
Q Consensus 234 wtd-----~~-~--~~~I~~~~~dG~~~~~~~lv~~~~~-~P~glalD~~~~-rLYwaD~~~~~I~~~~~-dG~~~ 298 (395)
+-= |. + ...|+.+++.. ..| +..-.+. ...+|++..+++ +||-++.....+...|. .|...
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t--~kr--v~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKT--HKR--VARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTT--TEE--EEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EEecCCCCCCccCCceEEEEEECCC--CeE--EEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 863 21 1 24577777765 222 2222221 244788876555 77877777777777774 44333
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=91.80 E-value=3.2 Score=41.12 Aligned_cols=119 Identities=8% Similarity=-0.043 Sum_probs=83.5
Q ss_pred EEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEE
Q psy13629 111 RIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 190 (395)
Q Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LY 190 (395)
|+.|+........+....+.+.+++|+|++. ...|..+++++...++.+.+ ..-++....+-...+-+++..|+.-
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~---~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRS---ELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeecccc---cceecccccchhhheEecccCCeEE
Confidence 5667766555677777899999999998765 55677789999999999863 2223333445677888888788888
Q ss_pred EEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEE
Q psy13629 191 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMF 233 (395)
Q Consensus 191 wtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LY 233 (395)
.|-+..+.+..-.-.+-.+...+..--....++.+.+++..+-
T Consensus 404 ~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred EEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEE
Confidence 8888888888777665444433334455666777777665554
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=91.74 E-value=20 Score=37.87 Aligned_cols=125 Identities=4% Similarity=-0.066 Sum_probs=82.8
Q ss_pred EecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC-C----ceEEEEeCCCCCcceEEEecCCCeEEEEeCCCC
Q psy13629 123 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-G----SKHNVITNGLITPDGLAIDWLTEKLYWTDSETN 197 (395)
Q Consensus 123 ~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~-~----~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~ 197 (395)
.+......+..++|++..+.+..+...++.|..+++..... . .....+.........++.++.+..+..+-...+
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 34445667899999987666777777889999998864211 0 011122233356788999987777777777789
Q ss_pred eEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 198 KLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 198 ~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
.|.+.|+........+ ........++++|.+..| .+. +....|...++..
T Consensus 149 tIrIWDl~tg~~~~~i-~~~~~V~SlswspdG~lL-at~-s~D~~IrIwD~Rs 198 (568)
T PTZ00420 149 FVNIWDIENEKRAFQI-NMPKKLSSLKWNIKGNLL-SGT-CVGKHMHIIDPRK 198 (568)
T ss_pred eEEEEECCCCcEEEEE-ecCCcEEEEEECCCCCEE-EEE-ecCCEEEEEECCC
Confidence 9999999866544333 233567899999876655 433 2245677777764
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=91.43 E-value=18 Score=36.90 Aligned_cols=162 Identities=8% Similarity=0.032 Sum_probs=104.5
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEc-cCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF-DGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~-dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
......+..++|.+.+. ...+...+.+|...+. ++. ....++........++++.+.+ ++..+-...+.|.+.+
T Consensus 200 ~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~---~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDG---RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWD 274 (456)
T ss_pred cccccceeeeEECCCCc-EEEEecCCceEEEeeccCCC---eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEe
Confidence 44566788999999877 5556667888888888 332 2233444555677999999977 7888888899999999
Q ss_pred CCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce---EEEEecCCc-CceeEEEeccccEEE
Q psy13629 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR---KVIVDSTIF-WPNGIAIDFNNRLLY 279 (395)
Q Consensus 204 ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~---~~lv~~~~~-~P~glalD~~~~rLY 279 (395)
+.+..+...+...-....++++.++...|. +- .....|...++.+ ... +++...... .-.-+..++.++.|+
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~-s~-s~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSPDGNLLV-SA-SYDGTIRVWDLET--GSKLCLKLLSGAENSAPVTSVQFSPNGKYLL 350 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECCCCCEEE-Ec-CCCccEEEEECCC--CceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence 998666666656667788999998666554 44 3356777788876 331 233322211 114455665555444
Q ss_pred Eeccceeeeeeeccccc
Q psy13629 280 WIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 280 waD~~~~~I~~~~~dG~ 296 (395)
.+ ..++.+..-++...
T Consensus 351 ~~-~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 351 SA-SLDRTLKLWDLRSG 366 (456)
T ss_pred Ee-cCCCeEEEEEccCC
Confidence 33 33345555555533
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=91.14 E-value=13 Score=34.78 Aligned_cols=146 Identities=14% Similarity=0.083 Sum_probs=84.3
Q ss_pred CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCC------------CCcceEEEecCCC--eEEEEeCCCCeEEEEECC
Q psy13629 140 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL------------ITPDGLAIDWLTE--KLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 140 ~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~------------~~p~glAVD~~~~--~LYwtd~~~~~I~v~~ld 205 (395)
++.||+--.+.+.|.|+++..... ......++. ..--++|||. +| -||-+....+.|.+..+|
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v--~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~~~~g~ivvskld 154 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSV--VARRELPGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATEDNNGNIVVSKLD 154 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcE--EEEEECCccccccccceecCCCceEEEEEcC-CCEEEEEecCCCCCcEEEEeeC
Confidence 467898888899999999997631 112222211 2235789995 55 356666666789999888
Q ss_pred CCceEEEE--ecCCCC---ceeEEEeCCCCeEEEEeeCCC--CeE-EEEecCCC-CcceEEEEecCCcCceeEEEecccc
Q psy13629 206 GKKRKVLY--WEDIDQ---PRAIALVPQDSIMFWTDWGEV--PKI-ERGAMNGD-PRHRKVIVDSTIFWPNGIAIDFNNR 276 (395)
Q Consensus 206 g~~~~~l~--~~~~~~---P~~iavdp~~g~LYwtd~~~~--~~I-~~~~~dG~-~~~~~~lv~~~~~~P~glalD~~~~ 276 (395)
-....+.- .....+ -++..+. |.||.++.... .+| +..|+... .....+.+.........|..++.++
T Consensus 155 ~~tL~v~~tw~T~~~k~~~~naFmvC---GvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk 231 (250)
T PF02191_consen 155 PETLSVEQTWNTSYPKRSAGNAFMVC---GVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDK 231 (250)
T ss_pred cccCceEEEEEeccCchhhcceeeEe---eEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCC
Confidence 76444322 122322 2455554 79999996521 233 23333321 0111222223344566677888999
Q ss_pred EEEEeccceeeeeee
Q psy13629 277 LLYWIDGRLTFIEVM 291 (395)
Q Consensus 277 rLYwaD~~~~~I~~~ 291 (395)
+||.=|.+.-.+..+
T Consensus 232 ~LY~wd~G~~v~Y~v 246 (250)
T PF02191_consen 232 KLYAWDNGYQVTYDV 246 (250)
T ss_pred eEEEEECCeEEEEEE
Confidence 999888654444433
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=91.05 E-value=9.5 Score=38.82 Aligned_cols=138 Identities=12% Similarity=0.044 Sum_probs=88.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+++.|+..+.-...+......+.+++|.+...+|--.. ..+-|..-.+.... ...++........+-|.+.+-.+.
T Consensus 102 ~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs-~gGdiiih~~~t~~--~tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 102 CVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS-DGGDIIIHGTKTKQ--KTTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred eeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec-cCCcEEEEecccCc--cccceecCCCCeEEEeecccccce
Confidence 556677764222344556667889999988776654332 23344443333220 112222222334456677777888
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecC-CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWED-IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~-~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
|-.+-+.++.+.+.|..|....--..+. -.-.+||+++|.+-.|+++- |...+|...+...
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV-G~Dkki~~yD~~s 240 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV-GYDKKINIYDIRS 240 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe-cccceEEEeeccc
Confidence 8888888999999999987664333233 33358999999999999987 7667888887764
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=91.03 E-value=14 Score=34.75 Aligned_cols=142 Identities=13% Similarity=0.147 Sum_probs=80.8
Q ss_pred CCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-C----------CCCcceEEEecCCC--eEEEEeCCCCeEEEEECCC
Q psy13629 140 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-G----------LITPDGLAIDWLTE--KLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 140 ~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-~----------~~~p~glAVD~~~~--~LYwtd~~~~~I~v~~ldg 206 (395)
++.||+.-..+..|.++++....... +..+.. . ..+--++|||. +| -||-|....+.|.++.||-
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~-~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE-~GLWvIYat~~~~g~ivvSkLnp 160 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQK-EPLLNGAGYNNRFPYAWGGFSDIDLAVDE-NGLWVIYATEQNAGKIVISKLNP 160 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEE-EEecCccccccccccccCCCccEEEEEcC-CceEEEEeccCCCCCEEEEeeCc
Confidence 47799988788899999999753111 122211 1 12235789996 55 4576777778999999987
Q ss_pred CceEEEEe--cCCC---CceeEEEeCCCCeEEEEeeC--CCCeE-EEEecCCCCcce-EEEEecCCcCceeEEEeccccE
Q psy13629 207 KKRKVLYW--EDID---QPRAIALVPQDSIMFWTDWG--EVPKI-ERGAMNGDPRHR-KVIVDSTIFWPNGIAIDFNNRL 277 (395)
Q Consensus 207 ~~~~~l~~--~~~~---~P~~iavdp~~g~LYwtd~~--~~~~I-~~~~~dG~~~~~-~~lv~~~~~~P~glalD~~~~r 277 (395)
....+.-. .... .-++..+. |.||.++.. ...+| +..+..+..... .+.+....+.-..|...+.+++
T Consensus 161 ~tL~ve~tW~T~~~k~sa~naFmvC---GvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~ 237 (255)
T smart00284 161 ATLTIENTWITTYNKRSASNAFMIC---GILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRK 237 (255)
T ss_pred ccceEEEEEEcCCCcccccccEEEe---eEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCe
Confidence 65544321 2222 23456664 799999842 23343 334444311111 1122222223334666778899
Q ss_pred EEEecccee
Q psy13629 278 LYWIDGRLT 286 (395)
Q Consensus 278 LYwaD~~~~ 286 (395)
||.=|-+.-
T Consensus 238 LY~wdng~~ 246 (255)
T smart00284 238 LYAWNNGHL 246 (255)
T ss_pred EEEEeCCeE
Confidence 998875433
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=90.94 E-value=13 Score=34.16 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=85.5
Q ss_pred ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe----CCC--CCcceEEEecCCCeEEEEe
Q psy13629 120 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT----NGL--ITPDGLAIDWLTEKLYWTD 193 (395)
Q Consensus 120 ~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~----~~~--~~p~glAVD~~~~~LYwtd 193 (395)
....+....+++.+| |.| ++.+|.+...+++|.-.++.-.. ...++-. .++ .....++||+ .|+|..+.
T Consensus 175 ~~~a~sghtghilal-ysw-n~~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessavaav~vdp-sgrll~sg 249 (350)
T KOG0641|consen 175 GFHALSGHTGHILAL-YSW-NGAMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASG 249 (350)
T ss_pred cceeecCCcccEEEE-EEe-cCcEEEccCCCceEEEEeeeccc--eeeeccCcccCCCcccceeEEEEECC-Ccceeeec
Confidence 344455556667666 555 35678888778888877776431 1111111 122 4577899998 56666787
Q ss_pred CCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC
Q psy13629 194 SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP 252 (395)
Q Consensus 194 ~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~ 252 (395)
.....-..+++.|.....-+-......+.+-++|..-+|.-. +...+|...++.|.+
T Consensus 250 ~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~--syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC--SYDMKIKLTDLQGDL 306 (350)
T ss_pred cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe--cccceEEEeecccch
Confidence 778888999999987766665666778899999877666533 345789999998843
|
|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.15 Score=57.02 Aligned_cols=64 Identities=31% Similarity=0.471 Sum_probs=49.8
Q ss_pred cccccchhhHHHhhhhcccccceeeeeecceeeeeeecCCCC----------CCCCccCcccccccCCCCceeE
Q psy13629 45 RPEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNS----------DEMPVQERCSFEKLQPDGAYLL 108 (395)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Li~~~~~~~~~----------~~~~~~~~C~~~~~~~~~~~~~ 108 (395)
+.+++.|+|.+.++.+++|++..++.++||.|++++.++... ...|...+|+.+....+|+|+-
T Consensus 1376 Rt~I~sDeRVyaL~rL~SmPI~~Li~yLYPRLYpLHdL~~e~e~d~~d~d~~ivLPp~LrLS~ErLesdGIYLL 1449 (1560)
T PTZ00395 1376 KKEILHDLKVYSLIKLLSMPIISSLLYVYPVMYVIHIKGKTNEIDSMDVDDDLFIPKTIPSSAEKIYSNGIYLL 1449 (1560)
T ss_pred cCCCCccHHHHHHHHHhCCCHHHHHhhhcCceEEcccccccccCCccCCCCccccCCcccchHHHhcCCcEEEE
Confidence 457889999999999999999999999999999998763221 1235566666677777777763
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=90.75 E-value=16 Score=35.11 Aligned_cols=134 Identities=12% Similarity=0.074 Sum_probs=88.9
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCC--EEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKS--MVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~--~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
..|+++|+....+...+....+.+.++-|++.-. +|. +...++.|...+.+.-. ....+...-...++|+|.|
T Consensus 63 etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~---~~~slK~H~~~Vt~lsiHP- 137 (362)
T KOG0294|consen 63 ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWE---LLKSLKAHKGQVTDLSIHP- 137 (362)
T ss_pred CcEEEEeccchhhhcceeccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeE---EeeeecccccccceeEecC-
Confidence 4899999988666777788899999999987652 232 34457778777776531 1112222334599999998
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
.++|-.+-++.+.+..-||-.....-+. ..-..+.-+-.+|.+.+.++.- ..+|....++-
T Consensus 138 S~KLALsVg~D~~lr~WNLV~Gr~a~v~-~L~~~at~v~w~~~Gd~F~v~~---~~~i~i~q~d~ 198 (362)
T KOG0294|consen 138 SGKLALSVGGDQVLRTWNLVRGRVAFVL-NLKNKATLVSWSPQGDHFVVSG---RNKIDIYQLDN 198 (362)
T ss_pred CCceEEEEcCCceeeeehhhcCccceee-ccCCcceeeEEcCCCCEEEEEe---ccEEEEEeccc
Confidence 7888888877888877776443333222 3445566677888777676654 45666666654
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.9 Score=27.75 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=29.5
Q ss_pred cCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 138 YKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 138 ~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
+.+++||.++...+.|..++.... .....+.. ...|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~---~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN---KVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC---eEEEEEEC-CCCCceEEeC
Confidence 357889999999999999888653 22222222 4689998874
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=90.16 E-value=18 Score=34.63 Aligned_cols=156 Identities=9% Similarity=0.062 Sum_probs=98.8
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcce-EEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG-LAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~g-lAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
....+.+|+|+..+..+-.+. .++.|+.++..... ...++....- .+.- .=.+..+..||=+...+..|.-.++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss-~dDsl~LYd~~~g~--~~~ti~skky-G~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSS-EDDSLRLYDSLSGK--QVKTINSKKY-GVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred CCCceeEEEecCCCCEEEEec-CCCeEEEEEcCCCc--eeeEeecccc-cccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 456789999999888777654 67788888876442 2233333221 2222 22344566677777778899999998
Q ss_pred CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
.......+..--...++|.+.|.+ -.|.+- +....|...++.- .+.+-+... ..+.-.|+| .+|.++-+-.+.
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~-S~D~tvrLWDlR~--~~cqg~l~~--~~~pi~AfD-p~GLifA~~~~~ 161 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKD-DTFLSS-SLDKTVRLWDLRV--KKCQGLLNL--SGRPIAAFD-PEGLIFALANGS 161 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCC-CeEEec-ccCCeEEeeEecC--CCCceEEec--CCCcceeEC-CCCcEEEEecCC
Confidence 887777776677889999999977 677776 3244566677764 344434332 234456788 445455444444
Q ss_pred eeeeeecc
Q psy13629 286 TFIEVMDY 293 (395)
Q Consensus 286 ~~I~~~~~ 293 (395)
+.|.-.|+
T Consensus 162 ~~IkLyD~ 169 (311)
T KOG1446|consen 162 ELIKLYDL 169 (311)
T ss_pred CeEEEEEe
Confidence 46654443
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.83 E-value=20 Score=36.42 Aligned_cols=135 Identities=15% Similarity=0.120 Sum_probs=80.9
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCC--eEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~--~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.+.+++. .....+..-.+.-..-+|.+++++|.++-..++ .|+.+++++.. ... +.+....-..=.+.+.+
T Consensus 219 ~i~~~~l~~-g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---~~~-Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 219 RIYYLDLNT-GKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---LPR-LTNGFGINTSPSWSPDG 293 (425)
T ss_pred eEEEEeccC-CccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---cee-cccCCccccCccCCCCC
Confidence 466667766 333444445555667789999999998876554 68888888863 222 22221111133445667
Q ss_pred CeEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecC
Q psy13629 187 EKLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMN 249 (395)
Q Consensus 187 ~~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~d 249 (395)
.+|||+.. +...|++++++|+..+.+. ........-..+|+..+|-+.... ....|+..+..
T Consensus 294 ~~ivf~Sdr~G~p~I~~~~~~g~~~~riT-~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 294 SKIVFTSDRGGRPQIYLYDLEGSQVTRLT-FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred CEEEEEeCCCCCcceEEECCCCCceeEee-ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 88888763 3558999999999886655 333333355577766665554421 12335555553
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=89.63 E-value=18 Score=36.25 Aligned_cols=151 Identities=11% Similarity=0.101 Sum_probs=100.9
Q ss_pred EEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC------
Q psy13629 132 AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD------ 205 (395)
Q Consensus 132 ~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld------ 205 (395)
.+|++....+.|..|...+++|...+++.. +....+.........++..+.....-.+-+..+++...|..
T Consensus 247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g---~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSADKTVKLWDVDTG---KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG 323 (463)
T ss_pred HHHHhccccceeEEecCCCceEEEEEcCCC---CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC
Confidence 467777788889999989999999999975 33444444556777888888777777777777777777765
Q ss_pred ------CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEE
Q psy13629 206 ------GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 206 ------g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLY 279 (395)
|...++.. ....++.+.+....|.+||.|.+.. | ....-+..+-....||.+......+.
T Consensus 324 ~~wk~~g~VEkv~w--~~~se~~f~~~tddG~v~~~D~R~~---------~---~~vwt~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 324 KEWKFDGEVEKVAW--DPHSENSFFVSTDDGTVYYFDIRNP---------G---KPVWTLKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred ceEEeccceEEEEe--cCCCceeEEEecCCceEEeeecCCC---------C---CceeEEEeccCCcceEEecCCCCcce
Confidence 22222222 4567788888888999999995522 1 11111112223466777776666777
Q ss_pred Eeccceeeeeeeccccceee
Q psy13629 280 WIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 280 waD~~~~~I~~~~~dG~~~~ 299 (395)
.+.+....|..-++++.+..
T Consensus 390 ~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred eeccccceEEEEeecCCCCc
Confidence 77777777777676666553
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=89.39 E-value=26 Score=35.35 Aligned_cols=184 Identities=14% Similarity=0.080 Sum_probs=105.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEcc------CCCCCceEEEEeCCCCCcceEEE
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD------GNNVGSKHNVITNGLITPDGLAI 182 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~d------g~~~~~~~~i~~~~~~~p~glAV 182 (395)
.|....+..+.-...+...-..+.-|-|..+ +..++|...++.|..+.+- .+..........+.--...+|-+
T Consensus 104 ~lYlWelssG~LL~v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~i 182 (476)
T KOG0646|consen 104 NLYLWELSSGILLNVLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQI 182 (476)
T ss_pred cEEEEEeccccHHHHHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEe
Confidence 3444445442333344556677888888855 4566677788888776542 11000111122222234566666
Q ss_pred ecC--CCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC--------
Q psy13629 183 DWL--TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP-------- 252 (395)
Q Consensus 183 D~~--~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~-------- 252 (395)
+.- +.+|| |-+....|.+.++.+.....-+ ..-..+.++++||.+..+|+-. +..+|+..++.+..
T Consensus 183 g~Gg~~~rl~-TaS~D~t~k~wdlS~g~LLlti-~fp~si~av~lDpae~~~yiGt--~~G~I~~~~~~~~~~~~~~v~~ 258 (476)
T KOG0646|consen 183 GSGGTNARLY-TASEDRTIKLWDLSLGVLLLTI-TFPSSIKAVALDPAERVVYIGT--EEGKIFQNLLFKLSGQSAGVNQ 258 (476)
T ss_pred cCCCccceEE-EecCCceEEEEEeccceeeEEE-ecCCcceeEEEcccccEEEecC--CcceEEeeehhcCCcccccccc
Confidence 653 34666 6667788999998877544333 3356789999999999999854 35677777765421
Q ss_pred -------cceEEEEecCC-cCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 253 -------RHRKVIVDSTI-FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 253 -------~~~~~lv~~~~-~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
+..+.++.... ....-|++..++. |..+-..+++|..-+....+.
T Consensus 259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 259 KGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred cccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchHHH
Confidence 12222332221 2566788884444 444444556666655554443
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=89.29 E-value=4.6 Score=39.33 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=64.0
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCe------EEEEECCCC----ceEE------EEecC---C----CCceeEEEeCCC
Q psy13629 173 GLITPDGLAIDWLTEKLYWTDSETNK------LEVSSLDGK----KRKV------LYWED---I----DQPRAIALVPQD 229 (395)
Q Consensus 173 ~~~~p~glAVD~~~~~LYwtd~~~~~------I~v~~ldg~----~~~~------l~~~~---~----~~P~~iavdp~~ 229 (395)
.+..-.||++|...+ .||+=+..+. ++...++.. .... +.... + ..+.||++ +.+
T Consensus 18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~ 95 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPD 95 (326)
T ss_pred ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecC
Confidence 345667899986344 4555444444 777666551 1111 11111 1 15669999 678
Q ss_pred CeEEEEeeCCC------CeEEEEecCCCCcceEEEEecC-------------CcCceeEEEeccccEEEEec
Q psy13629 230 SIMFWTDWGEV------PKIERGAMNGDPRHRKVIVDST-------------IFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 230 g~LYwtd~~~~------~~I~~~~~dG~~~~~~~lv~~~-------------~~~P~glalD~~~~rLYwaD 282 (395)
|.+||++ ... ++|.+++.+|... +++-+-.. -...-|||+..++++||.+-
T Consensus 96 g~~~is~-E~~~~~~~~p~I~~~~~~G~~~-~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 96 GSFWISS-EGGRTGGIPPRIRRFDLDGRVI-RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred CCEEEEe-CCccCCCCCCEEEEECCCCccc-ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 8999999 446 9999999998432 22211111 12345899998888888874
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=88.84 E-value=13 Score=36.30 Aligned_cols=173 Identities=13% Similarity=0.080 Sum_probs=103.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+++.++........+....+-+.||.++. +..+++.| +++|.+..++|. ...++... ..-.||.-.| .++
T Consensus 90 ~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgd--DKtvK~wk~~~~---p~~tilg~--s~~~gIdh~~-~~~ 160 (433)
T KOG0268|consen 90 EVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGD--DKTVKQWKIDGP---PLHTILGK--SVYLGIDHHR-KNS 160 (433)
T ss_pred eEEEEehhhhhhhheeecccCceeeEEecc-cceEEecC--CcceeeeeccCC---cceeeecc--cccccccccc-ccc
Confidence 678888866444455566677889999987 66666554 677888888874 22333322 2334454444 455
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
+|.|-++ .|..-|..-.....-+.-+......+-++|..-.+.-+. +....|...++--..--.+++.... +|+
T Consensus 161 ~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~-~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~ 234 (433)
T KOG0268|consen 161 VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC-ASDRSIVLYDLRQASPLKKVILTMR---TNT 234 (433)
T ss_pred cccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee-ccCCceEEEecccCCccceeeeecc---ccc
Confidence 6655543 344444433333333323445556677777766665555 3455677777754323445555553 899
Q ss_pred EEEeccccEEEEeccceeeeeeeccccce
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
|...+ +...|++-..+..++..|..--.
T Consensus 235 IswnP-eafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 235 ICWNP-EAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred eecCc-cccceeeccccccceehhhhhhc
Confidence 99987 77888887777777666654433
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=88.77 E-value=17 Score=39.57 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=91.9
Q ss_pred CeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCce
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 209 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~ 209 (395)
.-..|.||+.+..|+..+ .++.|....-.... ...+++- .......++|.+. +.+.+-..++.|.++..+-...
T Consensus 15 G~t~i~~d~~gefi~tcg-sdg~ir~~~~~sd~-e~P~ti~-~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCG-SDGDIRKWKTNSDE-EEPETID-ISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred ceEEEEEcCCCCEEEEec-CCCceEEeecCCcc-cCCchhh-ccCceeEEEeecc---cceEEeeccceEEEeeCCCCCc
Confidence 357789999999888877 56666665544321 1222222 1334566777653 3566778899999999988777
Q ss_pred EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeee
Q psy13629 210 KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIE 289 (395)
Q Consensus 210 ~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~ 289 (395)
..++..---..+.++++-.+ .+-..- ++..-|...+++. ...+.....+-..--+|.+|+.+..|-++. .++.|.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g-~~iaag-sdD~~vK~~~~~D--~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v~ 163 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSG-KMIAAG-SDDTAVKLLNLDD--SSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKVQ 163 (933)
T ss_pred cceeeeeeccceEEEEecCC-cEEEee-cCceeEEEEeccc--cchheeecccCCceeeeeEcCCCCEEEEEe-cCceEE
Confidence 76774444456788888644 433332 3456677788766 333333334333445666665555444443 345555
Q ss_pred eeccc
Q psy13629 290 VMDYD 294 (395)
Q Consensus 290 ~~~~d 294 (395)
..+++
T Consensus 164 iw~~~ 168 (933)
T KOG1274|consen 164 IWDLQ 168 (933)
T ss_pred EEEcc
Confidence 55543
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.19 E-value=25 Score=33.73 Aligned_cols=164 Identities=15% Similarity=0.160 Sum_probs=93.1
Q ss_pred EEEEeeCCCCCccEEecC-CC-CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCC----cceEEE
Q psy13629 109 DIRIANLSRPLKPVTIIK-DL-EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT----PDGLAI 182 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~-~~-~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~----p~glAV 182 (395)
.++++|.....+.+++-. +. +-.+++ +-.++..|++|..++ ...+++.... ..++. ..... ...++|
T Consensus 107 GL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddg-fLivdvsdps---sP~la-grya~~~~d~~~v~I 179 (370)
T COG5276 107 GLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDG-FLIVDVSDPS---SPQLA-GRYALPGGDTHDVAI 179 (370)
T ss_pred ceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCc-EEEEECCCCC---Cceee-eeeccCCCCceeEEE
Confidence 667777766444444322 12 333444 445899999997544 4445554331 12222 22222 346777
Q ss_pred ecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC
Q psy13629 183 DWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 183 D~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
. ++.-|.+... +-+...|......-+++..---.|..-.+.+...+.|.++..+ -+...+.+|. +..+++-.-+
T Consensus 180 S--Gn~AYvA~~d-~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~-ssp~~~gsye 253 (370)
T COG5276 180 S--GNYAYVAWRD-GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGP-SSPTVFGSYE 253 (370)
T ss_pred e--cCeEEEEEeC-CCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCC-CCceEeeccc
Confidence 5 6778888754 3466667666655566643222334444555567888888553 3677777772 3333333335
Q ss_pred CcCceeE-EEeccccEEEEeccce
Q psy13629 263 IFWPNGI-AIDFNNRLLYWIDGRL 285 (395)
Q Consensus 263 ~~~P~gl-alD~~~~rLYwaD~~~ 285 (395)
-..|.++ ++-..+++.|++|...
T Consensus 254 t~~p~~~s~v~Vs~~~~Yvadga~ 277 (370)
T COG5276 254 TSNPVSISTVPVSGEYAYVADGAK 277 (370)
T ss_pred cCCcccccceecccceeeeecccc
Confidence 5567666 3445689999999643
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=87.93 E-value=25 Score=33.35 Aligned_cols=169 Identities=10% Similarity=0.052 Sum_probs=115.0
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC--CceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV--GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~--~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
...+.+++.-..+..++.+-..+..|....+...+. ......+...-...+++++.. .++..++-+..+.+..-|+.
T Consensus 15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~ 93 (315)
T KOG0279|consen 15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLA 93 (315)
T ss_pred CceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEec
Confidence 445677787777777888887888888888875421 112233333345688899886 67777888888999999999
Q ss_pred CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC-CcCceeEEEecccc-EEEEecc
Q psy13629 206 GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST-IFWPNGIAIDFNNR-LLYWIDG 283 (395)
Q Consensus 206 g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~-~~~P~glalD~~~~-rLYwaD~ 283 (395)
+...+..+...-....++++++++..+ +|- .....|...+.-| .-.-++.... -.|.+-+.+.+.+. -+.+.-+
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~dn~qi-vSG-SrDkTiklwnt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s 169 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFSTDNRQI-VSG-SRDKTIKLWNTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS 169 (315)
T ss_pred CCcEEEEEEecCCceEEEEecCCCcee-ecC-CCcceeeeeeecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence 876665554667778999999988766 443 2345577777666 3333343333 56888888887764 4444455
Q ss_pred ceeeeeeeccccceeeee
Q psy13629 284 RLTFIEVMDYDGYVRLVT 301 (395)
Q Consensus 284 ~~~~I~~~~~dG~~~~~t 301 (395)
.+..|..=|+++-+...+
T Consensus 170 ~DktvKvWnl~~~~l~~~ 187 (315)
T KOG0279|consen 170 WDKTVKVWNLRNCQLRTT 187 (315)
T ss_pred CCceEEEEccCCcchhhc
Confidence 567777778887766653
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=87.69 E-value=14 Score=36.22 Aligned_cols=99 Identities=21% Similarity=0.252 Sum_probs=62.0
Q ss_pred EEEEE-cCCCEEEEEECCC--CeEEEEEccCCCCCceEEEEeCCCCCc-ceEEEecCCCeEEEEeCC----CCeEEEEEC
Q psy13629 133 AIDYY-YKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITP-DGLAIDWLTEKLYWTDSE----TNKLEVSSL 204 (395)
Q Consensus 133 gl~~d-~~~~~lywsd~~~--~~I~~~~~dg~~~~~~~~i~~~~~~~p-~glAVD~~~~~LYwtd~~----~~~I~v~~l 204 (395)
...+- ..++.++|.-..+ ..|+.++.++. ... -+..+--.. .-+++|..++.||++-.. ...+++.++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~---~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG---KPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS---EEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc---cee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 44444 4555555554454 47888888886 323 333333334 458899999999999854 568999999
Q ss_pred C-CCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 205 D-GKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 205 d-g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
+ +...+.|......+ ..+.++|..+++-.+-
T Consensus 315 ~~~~~~~~LT~~~~~~-~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDH-YSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTT-EEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCc-eEEEECCCCCEEEEEE
Confidence 9 76665554222333 6899999877665544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=87.64 E-value=3.9 Score=39.43 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=47.1
Q ss_pred EEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC-CCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 169 i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld-g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
++..++.-|++-- |-.++||++|...+.+.+++++ |+...+ . .--..|+||++. ++++|++-
T Consensus 197 vl~~GLsmPhSPR--WhdgrLwvldsgtGev~~vD~~~G~~e~V-a-~vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 197 VVASGLSMPHSPR--WYQGKLWLLNSGRGELGYVDPQAGKFQPV-A-FLPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred EEEcCccCCcCCc--EeCCeEEEEECCCCEEEEEcCCCCcEEEE-E-ECCCCCccccee--CCEEEEEe
Confidence 4556666666654 6789999999999999999998 555444 3 445689999998 77777755
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=86.96 E-value=35 Score=34.03 Aligned_cols=158 Identities=14% Similarity=0.097 Sum_probs=79.5
Q ss_pred EEcCC-CEEEEEECC-CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEE
Q psy13629 136 YYYKK-SMVCWTDHG-TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY 213 (395)
Q Consensus 136 ~d~~~-~~lywsd~~-~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~ 213 (395)
|..++ +.||.++.. ...++.++++.. ....+........-|..+.+.++.||+... ..++.+.++++...+++.
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~---~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATG---EITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT----EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT--EEEEE
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccC---EEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCcEEEEE
Confidence 34445 455555532 457889999875 444454443333446667788899877642 368999999998877665
Q ss_pred ec-CCCCceeEEEeCCCCeEEEEe------------eC---------CCCeEEEEecCCCCcceEEEEecCCcCceeEEE
Q psy13629 214 WE-DIDQPRAIALVPQDSIMFWTD------------WG---------EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAI 271 (395)
Q Consensus 214 ~~-~~~~P~~iavdp~~g~LYwtd------------~~---------~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glal 271 (395)
.- ..-..++-.+....+.+++.. |. ...+|.++++.+ ...++++.+. .|-+-+-.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--G~~~~v~~~~-~wlgH~~f 195 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT--GERKVVFEDT-DWLGHVQF 195 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEES-S-EEEEEE
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC--CceeEEEecC-ccccCccc
Confidence 42 222234444433344444322 11 126899999998 6677666654 23333334
Q ss_pred eccc-cEEEEec-----cceeeeeeeccccceeee
Q psy13629 272 DFNN-RLLYWID-----GRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 272 D~~~-~rLYwaD-----~~~~~I~~~~~dG~~~~~ 300 (395)
.+.. ..|=++- .-..+|+.++.||++...
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~ 230 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKK 230 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EE
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCccee
Confidence 4333 3344432 224688899999887654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=85.87 E-value=25 Score=31.35 Aligned_cols=122 Identities=11% Similarity=-0.005 Sum_probs=77.1
Q ss_pred CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeC-CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCC
Q psy13629 151 EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS-ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229 (395)
Q Consensus 151 ~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~-~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~ 229 (395)
..|++++.++. ....+-...-....+++-.+.+..+.++.. ...+|..+++++.....+- -...+.|..+|.+
T Consensus 39 ~~l~~~~~~~~---~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~---~~~~n~i~wsP~G 112 (194)
T PF08662_consen 39 FELFYLNEKNI---PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG---TQPRNTISWSPDG 112 (194)
T ss_pred EEEEEEecCCC---ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec---CCCceEEEECCCC
Confidence 35666655554 223333333334788888888888776653 3457888998755544432 3456789999998
Q ss_pred CeEEEEeeCC-CCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEec
Q psy13629 230 SIMFWTDWGE-VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 230 g~LYwtd~~~-~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD 282 (395)
++|..+..+. ...|+..+.+. .+.+..........++.+++++.|..+.
T Consensus 113 ~~l~~~g~~n~~G~l~~wd~~~----~~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 113 RFLVLAGFGNLNGDLEFWDVRK----KKKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred CEEEEEEccCCCcEEEEEECCC----CEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 8888876553 35677777763 3344444444567777887777666554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=85.57 E-value=38 Score=33.16 Aligned_cols=166 Identities=10% Similarity=0.070 Sum_probs=91.9
Q ss_pred EEEEEeeCCCCCccEEec-----CCCCCeEEEEEEcCCCEEEE--EECCCC--eEEEEEccCCCCCceEEEEe----CCC
Q psy13629 108 LDIRIANLSRPLKPVTII-----KDLEEGAAIDYYYKKSMVCW--TDHGTE--MISCCTFDGNNVGSKHNVIT----NGL 174 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~-----~~~~~~~gl~~d~~~~~lyw--sd~~~~--~I~~~~~dg~~~~~~~~i~~----~~~ 174 (395)
-++.++++.+........ ....-...+.|...++.|++ .+...+ .+..++.... ..+.+.. ..+
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg---~~~~~~~e~~~~Wv 234 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTG---ETRVVLEETSDGWV 234 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTT---TCEEEEEEESSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCC---ceeEEEEecCCcce
Confidence 466777887633222222 23334556677777774444 444444 3455555433 2222222 123
Q ss_pred CCcceEEEe-cCCCeEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC---CCCeEEEEec
Q psy13629 175 ITPDGLAID-WLTEKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG---EVPKIERGAM 248 (395)
Q Consensus 175 ~~p~glAVD-~~~~~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~---~~~~I~~~~~ 248 (395)
.......+- ..++.++|.-.. -.+|+.++.+|...+.|......--.-+.+|+.++.||++--. ....++++++
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 334444442 345555555433 4589999999998775553333322458899999999999754 3568999999
Q ss_pred C-CCCcceEEEEecCCcCceeEEEeccccEEE
Q psy13629 249 N-GDPRHRKVIVDSTIFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 249 d-G~~~~~~~lv~~~~~~P~glalD~~~~rLY 279 (395)
+ | ...+.+.... ..-...+++++++.+.
T Consensus 315 ~~~--~~~~~LT~~~-~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 315 DSG--GEPKCLTCED-GDHYSASFSPDGKYYV 343 (353)
T ss_dssp TET--TEEEESSTTS-STTEEEEE-TTSSEEE
T ss_pred CCC--CCeEeccCCC-CCceEEEECCCCCEEE
Confidence 9 6 4454444333 2114777776666443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=85.47 E-value=17 Score=35.19 Aligned_cols=164 Identities=12% Similarity=0.050 Sum_probs=102.1
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEc--cCCCCCceEEEEeCC---CCCcceEEEecCCCeEEEEeCCCCeE
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF--DGNNVGSKHNVITNG---LITPDGLAIDWLTEKLYWTDSETNKL 199 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~--dg~~~~~~~~i~~~~---~~~p~glAVD~~~~~LYwtd~~~~~I 199 (395)
++....+..|+|.+++.+||... .+.|..++. .|..-....++.... ..-...+|..+.+-+++-.-+...++
T Consensus 155 ~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~ 232 (406)
T KOG2919|consen 155 QDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRV 232 (406)
T ss_pred HHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeeccccee
Confidence 44566789999999999999755 456777666 343211111222211 12355678888777777777666777
Q ss_pred EEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEE
Q psy13629 200 EVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLY 279 (395)
..+.-++.....++.....-..-|...+...+||.-. ....+|...++-- .+..++.- +=.++-.++|||
T Consensus 233 giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa-Rk~dkIl~WDiR~---~~~pv~~L------~rhv~~TNQRI~ 302 (406)
T KOG2919|consen 233 GIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA-RKDDKILCWDIRY---SRDPVYAL------ERHVGDTNQRIL 302 (406)
T ss_pred eeEecCCCCceeeecccCCCeeeEEeccCcCeecccc-cCCCeEEEEeehh---ccchhhhh------hhhccCccceEE
Confidence 7777777766655544445566677788888888654 4578899998865 22222221 112233566776
Q ss_pred Ee-ccceeeeeeeccccceeee
Q psy13629 280 WI-DGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 280 wa-D~~~~~I~~~~~dG~~~~~ 300 (395)
+- |...+.+.+-+.+|..++.
T Consensus 303 FDld~~~~~LasG~tdG~V~vw 324 (406)
T KOG2919|consen 303 FDLDPKGEILASGDTDGSVRVW 324 (406)
T ss_pred EecCCCCceeeccCCCccEEEE
Confidence 64 4555555566677777776
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=85.07 E-value=43 Score=33.35 Aligned_cols=186 Identities=11% Similarity=0.054 Sum_probs=103.6
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC----------CeEEEEEccCCCCCceEEEEeCCCCCc
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT----------EMISCCTFDGNNVGSKHNVITNGLITP 177 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~----------~~I~~~~~dg~~~~~~~~i~~~~~~~p 177 (395)
..++++|+..+........... ..++.|..++..+|++.... ..|++..+.... ....++......+
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~--~~d~lvfe~~~~~ 226 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ--SEDELVFEEPDEP 226 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G--GG-EEEEC-TTCT
T ss_pred EEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh--HhCeeEEeecCCC
Confidence 3788899977322222222221 22389999988999997533 347777776542 2234555544444
Q ss_pred c---eEEEecCCCeEEEEe--CCC-CeEEEEECCCC-----ceEEEEecCCCCceeEEEeCCCCeEEE-EeeC-CCCeEE
Q psy13629 178 D---GLAIDWLTEKLYWTD--SET-NKLEVSSLDGK-----KRKVLYWEDIDQPRAIALVPQDSIMFW-TDWG-EVPKIE 244 (395)
Q Consensus 178 ~---glAVD~~~~~LYwtd--~~~-~~I~v~~ldg~-----~~~~l~~~~~~~P~~iavdp~~g~LYw-td~~-~~~~I~ 244 (395)
. ++.+...++.|+++- ... ..++..+++.. ..+.+. .....-...+-. .++.+|+ |+.+ ...+|.
T Consensus 227 ~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~-~~~~~~~~~v~~-~~~~~yi~Tn~~a~~~~l~ 304 (414)
T PF02897_consen 227 FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS-PREDGVEYYVDH-HGDRLYILTNDDAPNGRLV 304 (414)
T ss_dssp TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE-ESSSS-EEEEEE-ETTEEEEEE-TT-TT-EEE
T ss_pred cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe-CCCCceEEEEEc-cCCEEEEeeCCCCCCcEEE
Confidence 4 777788778777654 233 57899998874 333333 333323222222 2666664 6644 568999
Q ss_pred EEecCCCCc-ceE-EEEecC-CcCceeEEEeccccEEEEec--cceeeeeeeccc-cceeee
Q psy13629 245 RGAMNGDPR-HRK-VIVDST-IFWPNGIAIDFNNRLLYWID--GRLTFIEVMDYD-GYVRLV 300 (395)
Q Consensus 245 ~~~~dG~~~-~~~-~lv~~~-~~~P~glalD~~~~rLYwaD--~~~~~I~~~~~d-G~~~~~ 300 (395)
+++++.... ... +++... -....++.+ .+++|++.. ....+|...+++ +.....
T Consensus 305 ~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 305 AVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp EEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred EecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 999987321 123 555443 123445554 477777774 445778888888 554444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=85.05 E-value=34 Score=34.66 Aligned_cols=181 Identities=8% Similarity=0.000 Sum_probs=106.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+++++..+.+....+..--+...+++|-.+++.+- ..-.++.|..+++..... -..+.....-..-.-+.+..+.
T Consensus 49 rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~Lla-aGD~sG~V~vfD~k~r~i---LR~~~ah~apv~~~~f~~~d~t 124 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLA-AGDESGHVKVFDMKSRVI---LRQLYAHQAPVHVTKFSPQDNT 124 (487)
T ss_pred EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEE-ccCCcCcEEEeccccHHH---HHHHhhccCceeEEEecccCCe
Confidence 344454443222222333345678899987665544 444788999988554210 0001111122233445566778
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
++.+-.....+..-++++.....-+...-+..+..++.|.++.|.+|- +...+|...+.-- .. ..+.+-+-+.|-.
T Consensus 125 ~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG-sYDg~vrl~DtR~--~~-~~v~elnhg~pVe 200 (487)
T KOG0310|consen 125 MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG-SYDGKVRLWDTRS--LT-SRVVELNHGCPVE 200 (487)
T ss_pred EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec-CCCceEEEEEecc--CC-ceeEEecCCCcee
Confidence 887777777778888888875433445567899999999999999987 5556666666654 21 2233333345655
Q ss_pred EEEeccccEEEEeccceeeeeeecccccee
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
-.+-..++.+..+.+ .+.|.+-|+-+..+
T Consensus 201 ~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 201 SVLALPSGSLIASAG-GNSVKVWDLTTGGQ 229 (487)
T ss_pred eEEEcCCCCEEEEcC-CCeEEEEEecCCce
Confidence 555555555555543 46677777764333
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=84.34 E-value=28 Score=35.30 Aligned_cols=130 Identities=12% Similarity=-0.011 Sum_probs=63.9
Q ss_pred eeEEEEEeeCCCCCccEEecCCC-C--CeEEEE--EEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eCC------
Q psy13629 106 YLLDIRIANLSRPLKPVTIIKDL-E--EGAAID--YYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNG------ 173 (395)
Q Consensus 106 ~~~~I~~~~l~~~~~~~~~~~~~-~--~~~gl~--~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~~------ 173 (395)
|-+.+.+.|+.. .+....+..- . .|.-+- .++....=|+.-.-+..|+++..+.......+.++ ...
T Consensus 220 yG~~l~vWD~~~-r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 220 YGHSLHVWDWST-RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp S--EEEEEETTT-TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred ccCeEEEEECCC-CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 446777777766 3333322221 1 232333 34455566666666778888877432211222222 211
Q ss_pred ------------CCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEe----cC---------------CCCcee
Q psy13629 174 ------------LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW----ED---------------IDQPRA 222 (395)
Q Consensus 174 ------------~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~----~~---------------~~~P~~ 222 (395)
..-+.+|.+.-..+.||+++...+.|..+|+.....-.++. .+ ...|+-
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 13468888888899999999999999999987754433332 11 124788
Q ss_pred EEEeCCCCeEEEEe
Q psy13629 223 IALVPQDSIMFWTD 236 (395)
Q Consensus 223 iavdp~~g~LYwtd 236 (395)
+-++.+.++||||.
T Consensus 379 vqlS~DGkRlYvTn 392 (461)
T PF05694_consen 379 VQLSLDGKRLYVTN 392 (461)
T ss_dssp EEE-TTSSEEEEE-
T ss_pred EEEccCCeEEEEEe
Confidence 88999999999997
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=84.09 E-value=30 Score=30.80 Aligned_cols=120 Identities=8% Similarity=0.003 Sum_probs=73.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC-CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH-GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~-~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
+|..++..+.....+.....+.+..++|+|.++++..... ....|..++.++. .+..-.-...+.|...|.++
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~------~i~~~~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK------KIFSFGTQPRNTISWSPDGR 113 (194)
T ss_pred EEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCccc------EeEeecCCCceEEEECCCCC
Confidence 4444444442222233334445899999999998876643 3457777777653 11211234556789998888
Q ss_pred eEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 188 KLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 188 ~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
.|-.+..+ .+.|...|.+...+ +..........++-+|+++++-.+.
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~--i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKK--ISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEE--eeccccCcEEEEEEcCCCCEEEEEE
Confidence 77776633 46789999884333 3223334567888888777766544
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=83.87 E-value=74 Score=35.08 Aligned_cols=103 Identities=8% Similarity=0.022 Sum_probs=72.5
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
-..++..+|++ +--|++|...++.|....++.++. .++-.. +..+...++-.++ ++.|..++++...|.|.|++.
T Consensus 206 DRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKa--WEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 206 DRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKA--WEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ccccceEEecC-CcceEEecCCcceeeEEEeccccc--eeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEeccc
Confidence 34466778886 456888988888787777776643 333222 3456788888887 778888999999999999987
Q ss_pred CceEEEEecCCCCceeEEEeCCCCeEEEE
Q psy13629 207 KKRKVLYWEDIDQPRAIALVPQDSIMFWT 235 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~iavdp~~g~LYwt 235 (395)
+.....+...-.+-.-||.+| +..||-+
T Consensus 282 Rt~v~tfrrendRFW~laahP-~lNLfAA 309 (1202)
T KOG0292|consen 282 RTSVQTFRRENDRFWILAAHP-ELNLFAA 309 (1202)
T ss_pred ccceeeeeccCCeEEEEEecC-Ccceeee
Confidence 766555544555566677777 4566654
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=83.81 E-value=41 Score=36.91 Aligned_cols=162 Identities=9% Similarity=0.069 Sum_probs=99.2
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
...++-||+|+|..-.|..+ .-++.|+-.+..-..+. .-..+.-...+|+++.+ ++-||++-...-.|.|-+.+.
T Consensus 8 kSsRvKglsFHP~rPwILts-lHsG~IQlWDYRM~tli---~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTS-LHSGVIQLWDYRMGTLI---DRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred ccccccceecCCCCCEEEEe-ecCceeeeehhhhhhHH---hhhhccCCccceeeecC-CCCeEEecCCccEEEEEeccc
Confidence 34577899999987766644 47788888877643111 11122234578999997 889999998889999999988
Q ss_pred CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEecccee
Q psy13629 207 KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLT 286 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~ 286 (395)
..+.--+...++..+.+.+++.--++. +. ++...|...++.. .+...+...+-.+-..-.+.+.+ .|.++-+-+.
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIl-SA-SDDQTIrIWNwqs--r~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQ 157 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWIL-SA-SDDQTIRIWNWQS--RKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQ 157 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEE-Ec-cCCCeEEEEeccC--CceEEEEecCceEEEeeccCCcc-ceEEEecccc
Confidence 777643336688888888887544432 11 3456677777765 23323333332222222233223 3445544555
Q ss_pred eeeeecccccee
Q psy13629 287 FIEVMDYDGYVR 298 (395)
Q Consensus 287 ~I~~~~~dG~~~ 298 (395)
+|.+=|..|-..
T Consensus 158 TVRVWDisGLRk 169 (1202)
T KOG0292|consen 158 TVRVWDISGLRK 169 (1202)
T ss_pred eEEEEeecchhc
Confidence 555555555443
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=83.22 E-value=29 Score=35.03 Aligned_cols=150 Identities=11% Similarity=0.054 Sum_probs=95.3
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
..-+...++.|+.++++|+.+. +.+.|+.+++.... ........+...-+.+++.. ++.++.+-+..+-+-.++.+
T Consensus 342 KieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 342 KIEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred eeccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcc--eEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccc
Confidence 3456778899998888887776 67799999998753 33444445545555666554 55555555667777777754
Q ss_pred C----CceEEEE--ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEE-----ecCCcCceeEEEecc
Q psy13629 206 G----KKRKVLY--WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIV-----DSTIFWPNGIAIDFN 274 (395)
Q Consensus 206 g----~~~~~l~--~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv-----~~~~~~P~glalD~~ 274 (395)
. +..+.+. .........|.++++...|-.+.......+..+.+.. .+++- ++.++.+..|++.+.
T Consensus 418 s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS----~TVFsNfP~~n~~vg~vtc~aFSP~ 493 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS----CTVFSNFPTSNTKVGHVTCMAFSPN 493 (514)
T ss_pred hhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc----eeeeccCCCCCCcccceEEEEecCC
Confidence 3 2222221 1223456788899988888777644445555555543 11111 235778889999988
Q ss_pred ccEEEEecc
Q psy13629 275 NRLLYWIDG 283 (395)
Q Consensus 275 ~~rLYwaD~ 283 (395)
++.|-+.+.
T Consensus 494 sG~lAvGNe 502 (514)
T KOG2055|consen 494 SGYLAVGNE 502 (514)
T ss_pred CceEEeecC
Confidence 898887764
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=82.46 E-value=47 Score=31.77 Aligned_cols=122 Identities=7% Similarity=0.029 Sum_probs=87.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
..-..|++.....+.+....+.+.+|++.+.+.+.|.+..-+..-...++.... ..+ .....-...+.+.+-| .|.
T Consensus 167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--c~q-tF~ghesDINsv~ffP-~G~ 242 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--CVQ-TFEGHESDINSVRFFP-SGD 242 (343)
T ss_pred eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc--eeE-eecccccccceEEEcc-CCC
Confidence 334455555455666777888999999999889999999888877777776541 223 3333445678888876 667
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecC--CCCceeEEEeCCCCeEEE
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWED--IDQPRAIALVPQDSIMFW 234 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~--~~~P~~iavdp~~g~LYw 234 (395)
-|.|-+.+.....+|+.......+.... ..-..+++++...++||-
T Consensus 243 afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa 290 (343)
T KOG0286|consen 243 AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA 290 (343)
T ss_pred eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence 7788888899999999887776666432 344678999976666664
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=82.27 E-value=36 Score=36.57 Aligned_cols=169 Identities=8% Similarity=0.072 Sum_probs=108.9
Q ss_pred EEEEeeCCC---CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 109 DIRIANLSR---PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~---~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.|.+.|+.. ....+.+-+....+.-++|+..+-.|..+...++.|..+++...+ ........-.+.++++..+.
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~---S~~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK---SKSTFRSNSESIRDVKFSPG 187 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc---ccccccccchhhhceeeccC
Confidence 456666654 223446667788899999999999999999999999999998652 23333446678999999999
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEE-EecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCc
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVL-YWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIF 264 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l-~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~ 264 (395)
.++.|++-...+.++.-|+.-..+-.+ +..--.-...+-.+| ..-|.+.-|....|...+|.+....+...+++.
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-- 263 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-- 263 (839)
T ss_pred CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC--CCceeeecCCCccEEEEeccCCCccceeEEeec--
Confidence 999999998999999999865433221 111111223344455 344445535556677788876434444444332
Q ss_pred CceeEEEeccccEEEEeccceeeeeeec
Q psy13629 265 WPNGIAIDFNNRLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 265 ~P~glalD~~~~rLYwaD~~~~~I~~~~ 292 (395)
.| =+|+=|--+....+..+.
T Consensus 264 ap--------v~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 264 AP--------VGRVKWRPARSYHLATCS 283 (839)
T ss_pred ce--------eeeeeeccCccchhhhhh
Confidence 12 246666666555554433
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=82.18 E-value=28 Score=35.10 Aligned_cols=158 Identities=6% Similarity=-0.014 Sum_probs=84.3
Q ss_pred EEecCCCCCeEEEEEEcCCC-EEEEEECCCCeEEEEEccCCCCCceEE-EEeCCCCCcceEEEecCCCeEEEEeCCCCeE
Q psy13629 122 VTIIKDLEEGAAIDYYYKKS-MVCWTDHGTEMISCCTFDGNNVGSKHN-VITNGLITPDGLAIDWLTEKLYWTDSETNKL 199 (395)
Q Consensus 122 ~~~~~~~~~~~gl~~d~~~~-~lywsd~~~~~I~~~~~dg~~~~~~~~-i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I 199 (395)
.......+++.+++|+|..+ ++..+....+.|..+++++..-..... +....-....+|.+.+.+-.-..+.+..+.|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 34455678899999999987 777777788999999997321101111 2222223344555555444333344445555
Q ss_pred EEEECCCCceEEEEec--CCCCceeEEEeCCCCeEE-EEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEecccc
Q psy13629 200 EVSSLDGKKRKVLYWE--DIDQPRAIALVPQDSIMF-WTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR 276 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~--~~~~P~~iavdp~~g~LY-wtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~ 276 (395)
...++.+..-+++... .-..-.++-+...++.+| ..+|| .-.+.-.+++|+......+.. ...++|++.+...
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh~---kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLHK---KKITSVALNPVCP 335 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhhh---cccceeecCCCCc
Confidence 5555555444433322 122234444555555544 44566 555666667773111112222 2567777776665
Q ss_pred EEEEecc
Q psy13629 277 LLYWIDG 283 (395)
Q Consensus 277 rLYwaD~ 283 (395)
.++-+.+
T Consensus 336 ~~laT~s 342 (498)
T KOG4328|consen 336 WFLATAS 342 (498)
T ss_pred hheeecc
Confidence 5544443
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=81.86 E-value=74 Score=33.62 Aligned_cols=154 Identities=8% Similarity=0.045 Sum_probs=95.0
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
...+.-+++++|.+-.+..+- .++.+...+.+.-.+ ...+-.....--.+--| ...+...+-+...+|.+++.+.
T Consensus 12 rSdRVKsVd~HPtePw~la~L-ynG~V~IWnyetqtm--VksfeV~~~PvRa~kfi--aRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAAL-YNGDVQIWNYETQTM--VKSFEVSEVPVRAAKFI--ARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred cCCceeeeecCCCCceEEEee-ecCeeEEEeccccee--eeeeeecccchhhheee--eccceEEEecCCceEEEEeccc
Confidence 456778888888776665543 567777777775321 11111111111111111 2445667778889999999998
Q ss_pred CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEecccee
Q psy13629 207 KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLT 286 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~ 286 (395)
..+...+....+..+.|+++|..-++. |. ++...|...+-++. -.....+..+-++...+++.+.+.+-|.+..-+.
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vL-ts-SDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVL-TS-SDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEE-ec-CCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 877777766778899999999766543 32 34566777777763 3444555566667777788776665555544333
Q ss_pred ee
Q psy13629 287 FI 288 (395)
Q Consensus 287 ~I 288 (395)
+|
T Consensus 164 TV 165 (794)
T KOG0276|consen 164 TV 165 (794)
T ss_pred cE
Confidence 33
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=81.84 E-value=87 Score=34.43 Aligned_cols=161 Identities=11% Similarity=0.069 Sum_probs=93.3
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
....+.+++... + .|.+...++.|.++.++.. ...+++..---..+.++|+. +|+.-..-+..-.|.+.+++.
T Consensus 55 ~g~~v~~ia~~s--~-~f~~~s~~~tv~~y~fps~---~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 55 SGELVSSIACYS--N-HFLTGSEQNTVLRYKFPSG---EEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred cCceeEEEeecc--c-ceEEeeccceEEEeeCCCC---CccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccc
Confidence 334455665542 2 5667778899999999976 34445544334567899986 555555666667788888877
Q ss_pred CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec--C-----CcCceeEEEeccccEEE
Q psy13629 207 KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS--T-----IFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~--~-----~~~P~glalD~~~~rLY 279 (395)
......+...-....+|.++|.+.+|-++.. ..+|...+++.. .-..++..- . -.-.+-++..+.++.+-
T Consensus 128 ~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 128 SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--DGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred cchheeecccCCceeeeeEcCCCCEEEEEec--CceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence 6655544344556678889998888877763 355666666431 111111110 0 01122345555555554
Q ss_pred Eeccceeeeeeecccccee
Q psy13629 280 WIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 280 waD~~~~~I~~~~~dG~~~ 298 (395)
+... .+.|.+.+.+|-..
T Consensus 205 ~~~~-d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 205 VPPV-DNTVKVYSRKGWEL 222 (933)
T ss_pred eecc-CCeEEEEccCCcee
Confidence 4433 35566666555443
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=80.77 E-value=65 Score=32.29 Aligned_cols=186 Identities=14% Similarity=0.066 Sum_probs=111.6
Q ss_pred cccCCCCceeE--------EEEEeeCCCCCc-cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEE
Q psy13629 98 EKLQPDGAYLL--------DIRIANLSRPLK-PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHN 168 (395)
Q Consensus 98 ~~~~~~~~~~~--------~I~~~~l~~~~~-~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~ 168 (395)
..-+++|.|+. -|..+..+..-+ .-..+.....+..+.|+|+.+.|.-.. .+..+...+.+.+. ...
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg-~~e~~~lwDv~tgd---~~~ 305 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG-FDEVLSLWDVDTGD---LRH 305 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC-chHheeeccCCcch---hhh
Confidence 35566677762 334444444322 223344556677789999998887554 44557777777542 122
Q ss_pred EEeCC-CCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe
Q psy13629 169 VITNG-LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA 247 (395)
Q Consensus 169 i~~~~-~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~ 247 (395)
....+ ..++...|--+.+.. ++|-+....|...++||.....--........++|+.+++.+++..+ ...+|...+
T Consensus 306 ~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~--~d~~i~l~~ 382 (519)
T KOG0293|consen 306 LYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT--VDKKIRLYN 382 (519)
T ss_pred hcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe--cccceeeec
Confidence 22222 345666666664444 67777788999999999754322112235578999999999998776 245666666
Q ss_pred cCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 248 MNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 248 ~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
.... ..+. +++++ +-...+.|. .++++..++-..+.|.-=|+.
T Consensus 383 ~e~~-~dr~-lise~-~~its~~iS-~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 383 REAR-VDRG-LISEE-QPITSFSIS-KDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred hhhh-hhhc-ccccc-CceeEEEEc-CCCcEEEEEcccCeeEEeecc
Confidence 6541 2232 33332 235667777 445677777666767666655
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=80.68 E-value=12 Score=36.51 Aligned_cols=169 Identities=12% Similarity=0.019 Sum_probs=106.3
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.+|++.|...-.-...+....++...|.|| +++..+..++.+|...+.+.. +.-..........-++.+. +
T Consensus 217 nTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tg---e~l~tlihHceaVLhlrf~---n 287 (499)
T KOG0281|consen 217 NTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTG---EPLNTLIHHCEAVLHLRFS---N 287 (499)
T ss_pred CceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCC---chhhHHhhhcceeEEEEEe---C
Confidence 366666654422233455567788888887 448899988999999999865 2222333334455566653 4
Q ss_pred eEEEEeCCCCeEEEEECCCCce----EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCC
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKR----KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~----~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
.+-+|-+...+|.|-+++...- ++++ ......+-+-+| . ++.++..| ...|...+++. .. ++..--
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd--~-kyIVsASg-DRTikvW~~st--~e---fvRtl~ 357 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD--D-KYIVSASG-DRTIKVWSTST--CE---FVRTLN 357 (499)
T ss_pred CEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccc--c-ceEEEecC-CceEEEEeccc--ee---eehhhh
Confidence 4556777888999999987542 2333 334455555554 3 34455534 56677777765 11 222222
Q ss_pred cCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
+.-.|+|.--..+||.++-+.+++|...+...
T Consensus 358 gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 358 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred cccccceehhccCeEEEecCCCceEEEEeccc
Confidence 34678998778899999998888887666544
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=80.59 E-value=68 Score=33.91 Aligned_cols=180 Identities=11% Similarity=0.026 Sum_probs=102.3
Q ss_pred CceeEEEEEeeCCCCCccEEecC--CCCCeEEEEEEcCCCEEEEEECCC------CeEEEEEccCCCCCceEEEEeCCCC
Q psy13629 104 GAYLLDIRIANLSRPLKPVTIIK--DLEEGAAIDYYYKKSMVCWTDHGT------EMISCCTFDGNNVGSKHNVITNGLI 175 (395)
Q Consensus 104 ~~~~~~I~~~~l~~~~~~~~~~~--~~~~~~gl~~d~~~~~lywsd~~~------~~I~~~~~dg~~~~~~~~i~~~~~~ 175 (395)
+.....+..+|... ..-....+ ....-.|+++- ++.||.+.+.+ +.+.+++.+.. .+.. ...+.
T Consensus 297 ~~~~~~ve~yd~~~-~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~---~W~~--~a~M~ 368 (571)
T KOG4441|consen 297 GQSLRSVECYDPKT-NEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN---QWTP--VAPMN 368 (571)
T ss_pred CcccceeEEecCCc-CcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC---ceec--cCCcc
Confidence 44445666666654 22222221 22234555554 67899998766 46777777765 2222 23332
Q ss_pred -CcceEEEecCCCeEEEEeCC-----CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC------CCCeE
Q psy13629 176 -TPDGLAIDWLTEKLYWTDSE-----TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG------EVPKI 243 (395)
Q Consensus 176 -~p~glAVD~~~~~LYwtd~~-----~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~------~~~~I 243 (395)
.=.+.++-..+|.||..-+. ...++++|+....-..+.. -...-.+.++-..+|+||..- | .-..+
T Consensus 369 ~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~G-G~~~~~~~l~sv 446 (571)
T KOG4441|consen 369 TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIG-GGDGSSNCLNSV 446 (571)
T ss_pred CccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEc-CcCCCccccceE
Confidence 23346666679999998743 3579999998876655542 222344566666799999886 3 12678
Q ss_pred EEEecCCCCcceEEEEecC-CcCceeEEEeccccEEEEeccce-----eeeeeeccccce
Q psy13629 244 ERGAMNGDPRHRKVIVDST-IFWPNGIAIDFNNRLLYWIDGRL-----TFIEVMDYDGYV 297 (395)
Q Consensus 244 ~~~~~dG~~~~~~~lv~~~-~~~P~glalD~~~~rLYwaD~~~-----~~I~~~~~dG~~ 297 (395)
++.+... ..=+.+.... -..-.|++. .+++||+.=... .+|++.++....
T Consensus 447 e~YDP~t--~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 447 ECYDPET--NTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEEcCCC--CceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 8888875 2212222211 112234444 488999985432 345555554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 395 | ||||
| 3soq_A | 318 | The Structure Of The First Ywtd Beta Propeller Doma | 4e-51 | ||
| 3sob_B | 316 | The Structure Of The First Ywtd Beta Propeller Doma | 5e-51 | ||
| 4dg6_A | 616 | Crystal Structure Of Domains 1 And 2 Of Lrp6 Length | 1e-50 | ||
| 3s94_A | 619 | Crystal Structure Of Lrp6-E1e2 Length = 619 | 1e-50 | ||
| 3v64_C | 349 | Crystal Structure Of Agrin And Lrp4 Length = 349 | 2e-42 | ||
| 3v65_B | 386 | Crystal Structure Of Agrin And Lrp4 Complex Length | 2e-42 | ||
| 1zkc_A | 197 | Crystal Structure Of The Cyclophiln_ring Domain Of | 9e-34 | ||
| 3s2k_A | 629 | Structural Basis Of Wnt Signaling Inhibition By Dic | 3e-33 | ||
| 3s8v_A | 623 | Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | 3e-33 | ||
| 4a0p_A | 628 | Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | 3e-33 | ||
| 1ijq_A | 316 | Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma | 1e-28 | ||
| 3p5b_L | 400 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 2e-28 | ||
| 3p5c_L | 440 | The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE | 3e-28 | ||
| 3m0c_C | 791 | The X-Ray Crystal Structure Of Pcsk9 In Complex Wit | 8e-28 | ||
| 1n7d_A | 699 | Extracellular Domain Of The Ldl Receptor Length = 6 | 1e-27 | ||
| 2k7n_A | 203 | Solution Structure Of The Ppil1 Bound To A Fragment | 2e-23 | ||
| 1xwn_A | 174 | Solution Structure Of Cyclophilin Like 1(Ppil1) And | 2e-23 | ||
| 2oju_A | 167 | X-Ray Structure Of Complex Of Human Cyclophilin J W | 2e-23 | ||
| 2x7k_A | 166 | The Crystal Structure Of Ppil1 In Complex With Cycl | 2e-23 | ||
| 1xyh_A | 161 | Crystal Structure Of Recombinant Human Cyclophilin | 2e-23 | ||
| 2b71_A | 196 | Plasmodium Yoelii Cyclophilin-Like Protein Length = | 7e-21 | ||
| 2a2n_A | 176 | Crystal Structure Of The Peptidylprolyl Isomerase D | 8e-19 | ||
| 2poe_A | 185 | Crystal Structure Of Cryptosporidium Parvum Cycloph | 2e-18 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 3e-18 | ||
| 1npe_A | 267 | Crystal Structure Of Nidogen/laminin Complex Length | 2e-05 | ||
| 3bo7_A | 201 | Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro | 6e-18 | ||
| 2fu0_A | 160 | Plasmodium Falciparum Cyclophilin Pfe0505w Putative | 7e-17 | ||
| 2hq6_A | 185 | Structure Of The Cyclophilin_cecyp16-like Domain Of | 3e-16 | ||
| 1dyw_A | 173 | Biochemical And Structural Characterization Of A Di | 2e-15 | ||
| 3r49_A | 166 | Human Cyclophilin D Complexed With Quinolin-8-Amine | 4e-14 | ||
| 2z6w_A | 165 | Crystal Structure Of Human Cyclophilin D In Complex | 4e-14 | ||
| 2bit_X | 165 | Crystal Structure Of Human Cyclophilin D At 1.7 A R | 4e-14 | ||
| 3qyu_A | 164 | Crystal Structure Of Human Cyclophilin D At 1.54 A | 4e-14 | ||
| 1ihg_A | 370 | Bovine Cyclophilin 40, Monoclinic Form Length = 370 | 8e-14 | ||
| 2hqj_A | 183 | Cyclophilin From Leishmania Major Length = 183 | 1e-13 | ||
| 1m9e_A | 164 | X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- | 2e-13 | ||
| 2x2a_A | 165 | Free Acetyl-Cypa Trigonal Form Length = 165 | 2e-13 | ||
| 1bck_A | 165 | Human Cyclophilin A Complexed With 2-Thr Cyclospori | 2e-13 | ||
| 5cyh_A | 164 | Cyclophilin A Complexed With Dipeptide Gly-Pro Leng | 2e-13 | ||
| 2x2c_K | 165 | Acetyl-Cypa:cyclosporine Complex Length = 165 | 2e-13 | ||
| 2rma_A | 165 | Crystal Structures Of Cyclophilin A Complexed With | 2e-13 | ||
| 2xgy_B | 173 | Complex Of Rabbit Endogenous Lentivirus (Relik)caps | 2e-13 | ||
| 2alf_A | 164 | Crystal Structure Of Human Cypa Mutant K131a Length | 2e-13 | ||
| 3rdd_A | 184 | Human Cyclophilin A Complexed With An Inhibitor Len | 2e-13 | ||
| 2x83_B | 163 | Evolutionary Basis Of Hiv Restriction By The Antire | 2e-13 | ||
| 2wlw_A | 165 | Structure Of The N-Terminal Capsid Domain Of Hiv-2 | 2e-13 | ||
| 4dgd_A | 165 | Trimcyp Cyclophilin Domain From Macaca Mulatta: H70 | 3e-13 | ||
| 2x25_B | 169 | Free Acetyl-Cypa Orthorhombic Form Length = 169 | 3e-13 | ||
| 3k0o_A | 165 | Room Temperature Structure Of Cypa Mutant Ser99thr | 4e-13 | ||
| 3k0r_A | 165 | Cryogenic Structure Of Cypa Mutant Arg55lys Length | 5e-13 | ||
| 2esl_A | 190 | Human Cyclophilin C In Complex With Cyclosporin A L | 1e-12 | ||
| 1qoi_A | 177 | U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = | 1e-12 | ||
| 1z81_A | 229 | Crystal Structure Of Cyclophilin From Plasmodium Yo | 2e-12 | ||
| 2rmc_A | 182 | Crystal Structure Of Murine Cyclophilin C Complexed | 2e-12 | ||
| 4i9y_A | 167 | Structure Of The C-terminal Domain Of Nup358 Length | 2e-12 | ||
| 1ist_A | 162 | Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng | 4e-12 | ||
| 2r99_A | 173 | Crystal Structure Of Cyclophilin Abh-Like Domain Of | 4e-12 | ||
| 1qng_A | 170 | Plasmodium Falciparum Cyclophilin Complexed With Cy | 4e-12 | ||
| 1qnh_A | 170 | Plasmodium Falciparum Cyclophilin (Double Mutant) C | 5e-12 | ||
| 1zmf_A | 165 | C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1 | 6e-12 | ||
| 1aws_A | 164 | Secypa Complexed With Hagpia (Pseudo-Symmetric Mono | 7e-12 | ||
| 2ck1_A | 172 | The Structure Of Oxidised Cyclophilin A From S. Man | 8e-12 | ||
| 2cfe_A | 162 | The 1.5 A Crystal Structure Of The Malassezia Sympo | 1e-11 | ||
| 1c5f_A | 177 | Crystal Structure Of The Cyclophilin-Like Domain Fr | 2e-11 | ||
| 1xo7_A | 166 | Crystal Structure Of Cyclophilin From Trypanosoma C | 3e-11 | ||
| 2c3b_A | 172 | The Crystal Structure Of Aspergillus Fumigatus Cycl | 8e-11 | ||
| 2plu_A | 186 | Crystal Structure Of Cryptosporidium Parvum Cycloph | 1e-10 | ||
| 3bt8_A | 172 | Crystal Structure Of Mutant Cyclophilin (R147a) Fro | 1e-10 | ||
| 2haq_A | 172 | Crystal Structure Of Cyclophilin A From Leishmania | 2e-10 | ||
| 1h0p_A | 182 | Cyclophilin_5 From C. Elegans Length = 182 | 2e-10 | ||
| 3k2c_A | 193 | Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom | 3e-10 | ||
| 3uch_A | 174 | Crystal Structure Of A Hypotherical Peptidyl-Prolyl | 3e-10 | ||
| 3bkp_A | 232 | Crystal Structure Of The Toxoplasma Gondii Cyclophi | 5e-10 | ||
| 2he9_A | 192 | Structure Of The Peptidylprolyl Isomerase Domain Of | 9e-10 | ||
| 4fru_A | 185 | Crystal Structure Of Horse Wild-Type Cyclophilin B | 1e-09 | ||
| 4frv_A | 185 | Crystal Structure Of Mutated Cyclophilin B That Cau | 1e-09 | ||
| 3ich_A | 188 | Crystal Structure Of Cyclophilin B At 1.2 A Resolut | 2e-09 | ||
| 1cyn_A | 178 | Cyclophilin B Complexed With [d-(Cholinylester)ser8 | 2e-09 | ||
| 2gw2_A | 198 | Crystal Structure Of The Peptidyl-Prolyl Isomerase | 4e-09 | ||
| 2wfi_A | 179 | Atomic Resolution Crystal Structure Of The Ppiase D | 5e-09 | ||
| 2wfj_A | 179 | Atomic Resolution Crystal Structure Of The Ppiase D | 5e-09 | ||
| 3pmp_A | 164 | Crystal Structure Of Cyclophilin A From Moniliophth | 2e-08 | ||
| 3o7t_A | 164 | Crystal Structure Of Cyclophilin A From Moniliophth | 2e-08 | ||
| 3efo_B | 770 | Crystal Structure Of The Mammalian Copii-Coat Prote | 2e-07 | ||
| 1j2a_A | 166 | Structure Of E. Coli Cyclophilin B K163t Mutant Len | 2e-07 | ||
| 1clh_A | 166 | Three-Dimensional Solution Structure Of Escherichia | 2e-07 | ||
| 3t1u_A | 163 | Crystal Structure Of The Complex Of Cyclophilin-a E | 3e-07 | ||
| 1w74_A | 191 | X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer | 3e-07 | ||
| 3s6m_A | 167 | The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer | 5e-07 | ||
| 2nul_A | 164 | Peptidylprolyl Isomerase From E. Coli Length = 164 | 7e-07 | ||
| 1lop_A | 164 | Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P | 7e-07 |
| >pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318 | Back alignment and structure |
|
| >pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316 | Back alignment and structure |
|
| >pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616 | Back alignment and structure |
|
| >pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619 | Back alignment and structure |
|
| >pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349 | Back alignment and structure |
|
| >pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386 | Back alignment and structure |
|
| >pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197 | Back alignment and structure |
|
| >pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629 | Back alignment and structure |
|
| >pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623 | Back alignment and structure |
|
| >pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628 | Back alignment and structure |
|
| >pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316 | Back alignment and structure |
|
| >pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400 | Back alignment and structure |
|
| >pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440 | Back alignment and structure |
|
| >pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791 | Back alignment and structure |
|
| >pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699 | Back alignment and structure |
|
| >pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203 | Back alignment and structure |
|
| >pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174 | Back alignment and structure |
|
| >pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167 | Back alignment and structure |
|
| >pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166 | Back alignment and structure |
|
| >pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161 | Back alignment and structure |
|
| >pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196 | Back alignment and structure |
|
| >pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176 | Back alignment and structure |
|
| >pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267 | Back alignment and structure |
|
| >pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201 | Back alignment and structure |
|
| >pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160 | Back alignment and structure |
|
| >pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185 | Back alignment and structure |
|
| >pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173 | Back alignment and structure |
|
| >pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166 | Back alignment and structure |
|
| >pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165 | Back alignment and structure |
|
| >pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165 | Back alignment and structure |
|
| >pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164 | Back alignment and structure |
|
| >pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370 | Back alignment and structure |
|
| >pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183 | Back alignment and structure |
|
| >pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164 | Back alignment and structure |
|
| >pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165 | Back alignment and structure |
|
| >pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165 | Back alignment and structure |
|
| >pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164 | Back alignment and structure |
|
| >pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165 | Back alignment and structure |
|
| >pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165 | Back alignment and structure |
|
| >pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173 | Back alignment and structure |
|
| >pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164 | Back alignment and structure |
|
| >pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184 | Back alignment and structure |
|
| >pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163 | Back alignment and structure |
|
| >pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165 | Back alignment and structure |
|
| >pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165 | Back alignment and structure |
|
| >pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169 | Back alignment and structure |
|
| >pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165 | Back alignment and structure |
|
| >pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165 | Back alignment and structure |
|
| >pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190 | Back alignment and structure |
|
| >pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177 | Back alignment and structure |
|
| >pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229 | Back alignment and structure |
|
| >pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182 | Back alignment and structure |
|
| >pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167 | Back alignment and structure |
|
| >pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162 | Back alignment and structure |
|
| >pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173 | Back alignment and structure |
|
| >pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170 | Back alignment and structure |
|
| >pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170 | Back alignment and structure |
|
| >pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165 | Back alignment and structure |
|
| >pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164 | Back alignment and structure |
|
| >pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172 | Back alignment and structure |
|
| >pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162 | Back alignment and structure |
|
| >pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177 | Back alignment and structure |
|
| >pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166 | Back alignment and structure |
|
| >pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172 | Back alignment and structure |
|
| >pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186 | Back alignment and structure |
|
| >pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172 | Back alignment and structure |
|
| >pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172 | Back alignment and structure |
|
| >pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182 | Back alignment and structure |
|
| >pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193 | Back alignment and structure |
|
| >pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174 | Back alignment and structure |
|
| >pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232 | Back alignment and structure |
|
| >pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192 | Back alignment and structure |
|
| >pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185 | Back alignment and structure |
|
| >pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185 | Back alignment and structure |
|
| >pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188 | Back alignment and structure |
|
| >pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178 | Back alignment and structure |
|
| >pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198 | Back alignment and structure |
|
| >pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179 | Back alignment and structure |
|
| >pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179 | Back alignment and structure |
|
| >pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164 | Back alignment and structure |
|
| >pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164 | Back alignment and structure |
|
| >pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 | Back alignment and structure |
|
| >pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166 | Back alignment and structure |
|
| >pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166 | Back alignment and structure |
|
| >pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163 | Back alignment and structure |
|
| >pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191 | Back alignment and structure |
|
| >pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167 | Back alignment and structure |
|
| >pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164 | Back alignment and structure |
|
| >pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 2e-68
Identities = 74/100 (74%), Positives = 89/100 (89%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
GYVRL T+ G +NLEL+C++ PKTCENF++ C+ YY+GT FHRSIRNF+IQGGDPTGTG
Sbjct: 20 GYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTG 79
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
TGGES WGKPF+DEF+PN +HTGRG+LSMANSGPN+N SQ
Sbjct: 80 TGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQ 119
|
| >2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 3e-68
Identities = 59/100 (59%), Positives = 73/100 (73%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
GY+ + T+LG +ELY PKTC NF CE G+Y+ T FHR I NF+IQGGDPTGTG
Sbjct: 39 GYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTG 98
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GG+SI+G+ FEDE HTG G+LSM+N+GPNTN+SQ
Sbjct: 99 KGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQ 138
|
| >2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 1e-67
Identities = 51/100 (51%), Positives = 66/100 (66%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
+ T++G I++ L+ KT +NF H NGYYN FHR I++FM+Q GDP+G G
Sbjct: 6 KSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDG 65
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
TGGESIWG FEDEF + H+ ++SMAN GPNTN SQ
Sbjct: 66 TGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQ 105
|
| >2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 1e-67
Identities = 50/100 (50%), Positives = 68/100 (68%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
G V L T+ G I++EL+ PK C NF++ C YY+ T FHR + F++QGGDPTGTG
Sbjct: 25 GKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTG 84
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
+GGESI+G PF+DEF RG+++MAN+G + N SQ
Sbjct: 85 SGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQ 124
|
| >2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 1e-67
Identities = 57/100 (57%), Positives = 64/100 (64%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
+ TS+G I+ +L+ PKT ENF H NGYYNG FHR I+ FMIQ GDPTGTG
Sbjct: 22 DSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTG 81
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GGESIWG FEDEF H LSMAN+G NTN SQ
Sbjct: 82 MGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQ 121
|
| >2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166 | Back alignment and structure |
|---|
Score = 208 bits (533), Expect = 6e-67
Identities = 63/99 (63%), Positives = 74/99 (74%)
Query: 296 YVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGT 355
V L TS+G I LELY PKTC+NF + GYYNGTKFHR I++FMIQGGDPTGTG
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 356 GGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GG SI+GK FEDE P+ TG G+L+MAN+GP+TN SQ
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
|
| >2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 2e-66
Identities = 59/99 (59%), Positives = 71/99 (71%)
Query: 296 YVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGT 355
V L T +G I +E++C PKTCENF+ C + YYNG FHR+I+ FM+Q GDPTGTG
Sbjct: 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61
Query: 356 GGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GG SIWGK FEDE+ H RGV+SMAN+GPNTN SQ
Sbjct: 62 GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQ 100
|
| >2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 2e-66
Identities = 63/99 (63%), Positives = 74/99 (74%)
Query: 296 YVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGT 355
V L TS+G I LELY PKTC+NF + GYYNGTKFHR I++FMIQGGDPTGTG
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 356 GGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GG SI+GK FEDE P+ TG G+L+MAN+GP+TN SQ
Sbjct: 73 GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
|
| >3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 3e-64
Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 12/112 (10%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGG-----D 349
GY+R+VT+ G +N+EL+ ++ P+ C++F++ C Y++ T FHR IRNFMIQGG
Sbjct: 7 GYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQ 66
Query: 350 PTGTGTGGESI-------WGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
P+ +S G PFEDEF H G GVLSMAN G ++N S+
Sbjct: 67 PSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSE 118
|
| >2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185 | Back alignment and structure |
|---|
Score = 200 bits (512), Expect = 1e-63
Identities = 54/106 (50%), Positives = 73/106 (68%), Gaps = 4/106 (3%)
Query: 293 YDGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTG 352
Y VR++T+ G + EL+C+ PK C+NF+ +GYY T FH++I+ F+IQGGDPTG
Sbjct: 15 YFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTG 74
Query: 353 TGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSG----PNTNTSQ 394
TG GGESI+G+ F+DE P + RG+LSMA+ G PNTN SQ
Sbjct: 75 TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQ 120
|
| >3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 2e-60
Identities = 47/116 (40%), Positives = 65/116 (56%), Gaps = 16/116 (13%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
G V L TSLG +++EL+ P C NF++ C GYY T FHR +++F++QGGDPTGTG
Sbjct: 22 GKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTG 81
Query: 355 TGG--ESIWGKPFEDEFKPNYTHTGRGVLSMANSGPN--------------TNTSQ 394
GG + GKPF+ E P RG++ +AN G + TN +Q
Sbjct: 82 RGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQ 137
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 205 bits (521), Expect = 9e-60
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 3/178 (1%)
Query: 132 AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH-NVITNGLITPDGLAIDWLTEKLY 190
A+D + + W+D MI D + S + VI+ + PDGLA+DW+ +Y
Sbjct: 409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIY 468
Query: 191 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250
WTDS + V+ G KRK L+ E +PRAI + P M+WTDWG KI++G +NG
Sbjct: 469 WTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 528
Query: 251 DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINL 308
+V I WPNGI +D + LYW+D +L I +D +G R L
Sbjct: 529 --VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 584
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 97.6 bits (242), Expect = 3e-22
Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 10/205 (4%)
Query: 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKL 189
+G A+D+ + + WTD +S G + + P + +D + +
Sbjct: 456 DGLAVDWIHSN--IYWTDSVLGTVSVADTKGVK---RKTLFREQGSKPRAIVVDPVHGFM 510
Query: 190 YWTD-SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248
YWTD K++ L+G L E+I P I L ++W D I +
Sbjct: 511 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL-HSISS--I 567
Query: 249 NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINL 308
+ + +RK I++ + ++ ++W D I + + ++
Sbjct: 568 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 627
Query: 309 ELYCNVF-PKTCENFMKHCENGYYN 332
+F T + CE +
Sbjct: 628 PEDMVLFHQLTQPRGVNWCERTTLS 652
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 92.9 bits (230), Expect = 1e-20
Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 7/163 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
+ +A+ + + + AI + WTD GT I +G ++ ++
Sbjct: 477 VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS 533
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++ +L
Sbjct: 534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 593
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAI 271
+ +FWTD I N ++ + P + +
Sbjct: 594 EDKVFWTDI-INEAIFS--ANRLTGSDVNLLAENLLSPEDMVL 633
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 1e-13
Identities = 30/167 (17%), Positives = 53/167 (31%), Gaps = 13/167 (7%)
Query: 144 CWTDHGTEMISCCT-----FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNK 198
G+ T S++ + L L + + ++YW+D
Sbjct: 370 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 429
Query: 199 LEVSSLDGK----KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH 254
+ + LD + DI P +A+ S ++WTD + G
Sbjct: 430 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL-GTVSVADTKG--VK 486
Query: 255 RKVIVDSTIFWPNGIAIDFNNRLLYWID-GRLTFIEVMDYDGYVRLV 300
RK + P I +D + +YW D G I+ +G
Sbjct: 487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 533
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 2e-09
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 5/116 (4%)
Query: 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLY 190
G +D + + W D IS +G N + ++ + ++ +K++
Sbjct: 544 GITLDLLSGR--LYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFEDKVF 598
Query: 191 WTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERG 246
WTD + ++ L E++ P + L Q + +W E + G
Sbjct: 599 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLSNG 654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 205 bits (522), Expect = 2e-59
Identities = 65/189 (34%), Positives = 96/189 (50%), Gaps = 3/189 (1%)
Query: 121 PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH-NVITNGLITPDG 179
++I +L A+D + + W+D MI D + S + VI+ + PDG
Sbjct: 416 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475
Query: 180 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE 239
LA+DW+ +YWTDS + V+ G KRK L+ E+ +PRAI + P M+WTDWG
Sbjct: 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 535
Query: 240 VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299
KI++G +NG +V I WPNGI +D + LYW+D +L I +D +G R
Sbjct: 536 PAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 593
Query: 300 VTSLGHINL 308
L
Sbjct: 594 TILEDEKRL 602
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 10/205 (4%)
Query: 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKL 189
+G A+D+ + + WTD +S G + + P + +D + +
Sbjct: 474 DGLAVDWIHSN--IYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIVVDPVHGFM 528
Query: 190 YWTD-SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248
YWTD K++ L+G L E+I P I L ++W D I +
Sbjct: 529 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL-HSISS--I 585
Query: 249 NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINL 308
+ + +RK I++ + ++ ++W D I + + ++
Sbjct: 586 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 645
Query: 309 ELYCNVF-PKTCENFMKHCENGYYN 332
+F T + CE +
Sbjct: 646 PEDMVLFHNLTQPRGVNWCERTTLS 670
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 93.0 bits (230), Expect = 1e-20
Identities = 31/163 (19%), Positives = 68/163 (41%), Gaps = 7/163 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
+ +A+ + ++ + AI + WTD GT I +G ++ ++
Sbjct: 495 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS 551
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++ +L
Sbjct: 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 611
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAI 271
+ +FWTD I N ++ + P + +
Sbjct: 612 EDKVFWTDI-INEAIFS--ANRLTGSDVNLLAENLLSPEDMVL 651
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 1e-13
Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 15/181 (8%)
Query: 135 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS 194
S+ + T D + S + N L + + ++YW+D
Sbjct: 388 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRN----VVALDTEVASNRIYWSDL 443
Query: 195 ETNKLEVSSLDGK----KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250
+ + LD + DI P +A+ S ++WTD + G
Sbjct: 444 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL-GTVSVADTKG 502
Query: 251 DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID-GRLTFIEVMDYDGYVRLV---TSLGHI 306
RK + P I +D + +YW D G I+ +G ++
Sbjct: 503 --VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560
Query: 307 N 307
N
Sbjct: 561 N 561
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 5e-59
Identities = 71/210 (33%), Positives = 105/210 (50%), Gaps = 9/210 (4%)
Query: 105 AYLL-----DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD 159
AYL ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 2 AYLFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60
Query: 160 GNNVGSKH-NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 218
+ S + VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+
Sbjct: 61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS 120
Query: 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278
+PRAI + P M+WTDWG KI++G +NG +V I WPNGI +D + L
Sbjct: 121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTENIQWPNGITLDLLSGRL 178
Query: 279 YWIDGRLTFIEVMDYDGYVRLVTSLGHINL 308
YW+D +L I +D +G R L
Sbjct: 179 YWVDSKLHSISSIDVNGGNRKTILEDEKRL 208
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316 | Back alignment and structure |
|---|
Score = 83.9 bits (207), Expect = 3e-18
Identities = 32/168 (19%), Positives = 69/168 (41%), Gaps = 7/168 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
+ +A+ + ++ + AI + WTD GT I +G ++ ++
Sbjct: 101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS 157
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++ +L
Sbjct: 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 217
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR 276
+ +FWTD I N ++ + P + + N
Sbjct: 218 EDKVFWTDIIN-EAIFS--ANRLTGSDVNLLAENLLSPEDMVLFHNLT 262
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 7e-59
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 104 GAYLL-----DIRIANLSRP-----LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMI 153
G +LL I L R + + + + +V WTD I
Sbjct: 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI 60
Query: 154 SCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY 213
+ G +I L +P+G+A+D L ++WTDS+ +++EV+ +DG +R+VL+
Sbjct: 61 GRASLHGGEP---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF 117
Query: 214 WEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAID 272
+ PR I P ++WTDW + PKIE M+G +R+++ + PNG+ D
Sbjct: 118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGLPNGLTFD 175
Query: 273 FNNRLLYWIDGRLTFIEVMDYDGYVR--LVTSLGH 305
+ L W+D E ++ R ++ L +
Sbjct: 176 AFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY 210
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 1e-22
Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 10/168 (5%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKH 167
I +A + + V L I + + WTD + I DG N
Sbjct: 103 IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---R 159
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
+ + L P+GL D + +L W D+ T++ E + R+ + + P A+
Sbjct: 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY- 217
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNN 275
+++TDW + + + GI I +
Sbjct: 218 -GKNLYYTDWKT-NSVIAMDLAI-SKEMDTFHPHKQTRLYGITIALSQ 262
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 195 bits (496), Expect = 7e-59
Identities = 70/161 (43%), Positives = 111/161 (68%), Gaps = 5/161 (3%)
Query: 135 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS 194
D+++++ +V W+D + I +G+NV V++ GL +P GLA+DW+ +KLYWTDS
Sbjct: 122 DFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDS 178
Query: 195 ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH 254
T+++EV++LDG RKVL W+ +++PRAIAL P + ++WTDWG P+IE +M+G
Sbjct: 179 GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS--G 236
Query: 255 RKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295
R++I D+ +FWPNG+ ID+ R +YW+D + IE + DG
Sbjct: 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 86.7 bits (214), Expect = 6e-19
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 9/163 (5%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
I +ANL + V + + LE+ AI + + + WTD G I + DG+ +
Sbjct: 183 IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG---RRI 239
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+ L P+GL ID+ ++YW D++ + +E ++LDG RK + + + P AI V +
Sbjct: 240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT-VFE 298
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAI 271
DS+ +WTDW I N + I+ + + +P I
Sbjct: 299 DSL-YWTDWHT-KSINS--ANKFTGKNQEIIRNKLHFPMDIHT 337
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 2e-15
Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 7/158 (4%)
Query: 144 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203
+ + + I D E ++W+D +++ ++
Sbjct: 88 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALD---FHHRRELVFWSDVTLDRILRAN 144
Query: 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI 263
L+G + + ++ P +A+ ++WTD G +IE ++G HRKV++ ++
Sbjct: 145 LNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS-RIEVANLDG--AHRKVLLWQSL 201
Query: 264 FWPNGIAIDFNNRLLYWID-GRLTFIEVMDYDGYVRLV 300
P IA+ +YW D G IE DG R +
Sbjct: 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 239
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 3e-58
Identities = 95/209 (45%), Positives = 133/209 (63%), Gaps = 10/209 (4%)
Query: 105 AYLL-----DIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF 158
LL D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F
Sbjct: 5 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF 64
Query: 159 DGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 218
+ S NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++D
Sbjct: 65 NKTE--SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122
Query: 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278
QPRAIAL P M+WTDWGEVPKIER M+G R +I++S I+WPNG+ +D+ + L
Sbjct: 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDG--SSRFIIINSEIYWPNGLTLDYEEQKL 180
Query: 279 YWIDGRLTFIEVMDYDGYVRLVTSLGHIN 307
YW D +L FI + DG R G +
Sbjct: 181 YWADAKLNFIHKSNLDGTNRQAVVKGSLP 209
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 86.3 bits (213), Expect = 5e-19
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 9/172 (5%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHN 168
I ++NL L+ V ++L++ AI + WTD G I DG++ +
Sbjct: 103 IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFI 159
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+I + + P+GL +D+ +KLYW D++ N + S+LDG R+ + + P A+ L
Sbjct: 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-- 217
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYW 280
+ I++WTDW I N + S IF P I R
Sbjct: 218 EDILYWTDWST-HSILA--CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNA 266
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 2e-07
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 5/128 (3%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 169
I A + + + I ++ + Y++ + W D I DG N V
Sbjct: 147 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAV 203
Query: 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229
+ L P L + + LYWTD T+ + + + DI P I Q
Sbjct: 204 VKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQ 261
Query: 230 SIMFWTDW 237
T+
Sbjct: 262 RQPNATNP 269
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 1e-57
Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 134 IDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH-NVITNGLITPDGLAIDWLTEKLYWT 192
+D + + W+D MI D + S + VI+ + PDGLA+DW+ +YWT
Sbjct: 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT 176
Query: 193 DSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP 252
DS + V+ G KRK L+ E+ +PRAI + P M+WTDWG KI++G +NG
Sbjct: 177 DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-- 234
Query: 253 RHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295
+V I WPNGI +D + LYW+D +L I +D +G
Sbjct: 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 106 bits (264), Expect = 1e-25
Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 10/205 (4%)
Query: 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKL 189
+G A+D+ + + WTD +S G + P + +D + +
Sbjct: 162 DGLAVDWIHSN--IYWTDSVLGTVSVADTKGVKR---KTLFRENGSKPRAIVVDPVHGFM 216
Query: 190 YWTD-SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248
YWTD K++ L+G L E+I P I L ++W D I +
Sbjct: 217 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL-HSISSIDV 275
Query: 249 NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINL 308
NG +RK I++ + ++ ++W D I + + ++
Sbjct: 276 NG--GNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS 333
Query: 309 ELYCNVF-PKTCENFMKHCENGYYN 332
+F T + CE +
Sbjct: 334 PEDMVLFHNLTQPRGVNWCERTTLS 358
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 92.2 bits (228), Expect = 9e-21
Identities = 32/168 (19%), Positives = 69/168 (41%), Gaps = 7/168 (4%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
+ +A+ + ++ + AI + WTD GT I +G ++ ++
Sbjct: 183 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YS 239
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++ +L
Sbjct: 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 299
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR 276
+ +FWTD I N ++ + P + + N
Sbjct: 300 EDKVFWTDI-INEAIFS--ANRLTGSDVNLLAENLLSPEDMVLFHNLT 344
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 6e-09
Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 12/169 (7%)
Query: 142 MVCWTDHGTEMISCCTFDG-------NNVGS-KHNVITNGLITPDGLAIDWLTEKLYWTD 193
E I C N G K + P A + Y
Sbjct: 29 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 88
Query: 194 SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG--D 251
+ +++ +LD + L ++ A+ + ++W+D + I ++
Sbjct: 89 TNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQ-RMICSTQLDRAHG 146
Query: 252 PRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300
++ I P+G+A+D+ + +YW D L + V D G R
Sbjct: 147 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 195
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 190 bits (482), Expect = 1e-54
Identities = 94/208 (45%), Positives = 133/208 (63%), Gaps = 5/208 (2%)
Query: 109 DIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167
D+R+ + + + TI+ LE+ AA+D+ + ++ W+D E I F+ S
Sbjct: 19 DLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--SVQ 76
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
NV+ +GL++PDGLA DWL EKLYWTDSETN++EVS+LDG RKVL+W+++DQPRAIAL P
Sbjct: 77 NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP 136
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
M+WTDWGEVPKIER M+G R +I++S I+WPNG+ +D+ + LYW D +L F
Sbjct: 137 SSGFMYWTDWGEVPKIERAGMDG--SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF 194
Query: 288 IEVMDYDGYVRLVTSLGHINLELYCNVF 315
I + DG R G + +F
Sbjct: 195 IHKSNLDGTNRQAVVKGSLPHPFALTLF 222
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 1e-49
Identities = 74/176 (42%), Positives = 111/176 (63%), Gaps = 5/176 (2%)
Query: 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184
++D+ AIDY + + WTD I DG+ V+T + PDG+A+DW
Sbjct: 345 LEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS---QFVVTAQIAHPDGIAVDW 401
Query: 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIE 244
+ LYWTD+ T+++EV+ L+G RK+L ED+++PRAI L P M+WTDWGE+PKIE
Sbjct: 402 VARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIE 461
Query: 245 RGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300
R A++G R V+V++++ WPNG+A+D++ +YW D + IEVM+ DG R V
Sbjct: 462 RAALDG--SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV 515
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 90.7 bits (224), Expect = 6e-20
Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 8/177 (4%)
Query: 135 DYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS 194
+ + + D + + + + + D + +YWTD
Sbjct: 310 KTCKDGATELLLLARRTDLRRISLDTPD-FTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD 368
Query: 195 ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH 254
E + S +DG + + I P IA+ ++WTD G +IE +NG
Sbjct: 369 EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGT-DRIEVTRLNG--TM 425
Query: 255 RKVIVDSTIFWPNGIAIDFNNRLLYWID-GRLTFIEVMDYDGYVRLV---TSLGHIN 307
RK+++ + P I +D +YW D G + IE DG R+V TSLG N
Sbjct: 426 RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPN 482
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 83.3 bits (205), Expect = 2e-17
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEM-ISCCTFDGNNVGSKHN 168
I + L+ ++ + I +DLEE AI + WTD G I DG++ +
Sbjct: 416 IEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD---RVV 472
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
++ L P+GLA+D+ K+YW D++T+K+EV + DG R+VL + I L+
Sbjct: 473 LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD 532
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS 261
++WTDW IER ++ R+VI+D
Sbjct: 533 Y--VYWTDWQR-RSIER--VHKRSAEREVIIDQ 560
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 4e-06
Identities = 37/234 (15%), Positives = 62/234 (26%), Gaps = 53/234 (22%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 169
I A + + + I ++ + Y++ + W D I DG N V
Sbjct: 152 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAV 208
Query: 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229
+ L P L + + LYWTD T+ + + + DI P I Q
Sbjct: 209 VKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQ 266
Query: 230 SIMFWTDWGEVPK----------------------------------------------- 242
T+ +
Sbjct: 267 RQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRT 326
Query: 243 -IERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295
+ R +++ V+ I I D +YW D + I DG
Sbjct: 327 DLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG 380
|
| >1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191 | Back alignment and structure |
|---|
Score = 176 bits (447), Expect = 7e-54
Identities = 47/116 (40%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 294 DGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENG---------------YYNGTKFHR 338
L T+ G I + L+ N PKT NF+ + +Y+G FHR
Sbjct: 23 TATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHR 82
Query: 339 SIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
I+ FMIQGGDPTGTG GG G F DEF P +L+MAN+GP TN SQ
Sbjct: 83 VIQGFMIQGGDPTGTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQ 135
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 178 bits (452), Expect = 8e-53
Identities = 76/196 (38%), Positives = 123/196 (62%), Gaps = 5/196 (2%)
Query: 120 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG 179
+ ++ +LE A+D+++++ +V W+D + I +G+NV V++ GL +P G
Sbjct: 64 EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGG 120
Query: 180 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE 239
LA+DW+ +KLYWTDS T+++EV++LDG RKVL W+ +++PRAIAL P + ++WTDWG
Sbjct: 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 180
Query: 240 VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299
P+IE +M+G R++I D+ +FWPNG+ ID+ R +YW+D + IE + DG R
Sbjct: 181 TPRIEASSMDGS--GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238
Query: 300 VTSLGHINLELYCNVF 315
+ VF
Sbjct: 239 AVISQGLPHPFAITVF 254
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349 | Back alignment and structure |
|---|
Score = 84.2 bits (207), Expect = 3e-18
Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 8/156 (5%)
Query: 144 CWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203
I + + ++ N L L E ++W+D +++ ++
Sbjct: 46 VLLFANRIDIRQVLPHRSE----YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRAN 101
Query: 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI 263
L+G + + ++ P +A+ ++WTD G +IE ++G HRKV++ ++
Sbjct: 102 LNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT-SRIEVANLDG--AHRKVLLWQSL 158
Query: 264 FWPNGIAIDFNNRLLYWID-GRLTFIEVMDYDGYVR 298
P IA+ +YW D G IE DG R
Sbjct: 159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 194
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 7e-51
Identities = 75/205 (36%), Positives = 113/205 (55%), Gaps = 12/205 (5%)
Query: 102 PDGAYLL-----DIRIANL-SRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISC 155
A+LL DIR +L + + ++E +A+D+ + + WTD + IS
Sbjct: 4 VPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 63
Query: 156 CTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE 215
+G+ + +V+ GL P+G+A+DWL + LYW D+ TN++EVS LDG+ R+VL W+
Sbjct: 64 AFMNGSAL---EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK 120
Query: 216 DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNN 275
D+D PRA+AL P + M+WT+WG PKI+R D R +V + NG+ ID+
Sbjct: 121 DLDSPRALALDPAEGFMYWTEWGGKPKIDR--AAMDGSERTTLV-PNVGRANGLTIDYAK 177
Query: 276 RLLYWIDGRLTFIEVMDYDGYVRLV 300
R LYW D IE + G R V
Sbjct: 178 RRLYWTDLDTNLIESSNMLGLNREV 202
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 169 bits (428), Expect = 4e-47
Identities = 67/233 (28%), Positives = 97/233 (41%), Gaps = 8/233 (3%)
Query: 89 MPVQERCSFEKLQPDGAYLLDIRIANLSRPLKPVTI--IKDLEEGAAIDYYYKKSMVCWT 146
CS + I + P I I L AIDY + W
Sbjct: 298 NADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWI 357
Query: 147 DHGTEMISCCTFDGNN---VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203
D MI DG+ V N I P L+ID + +YWT TN + V+
Sbjct: 358 DSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTR 417
Query: 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDST 262
LDG+ V+ + D+PRA+ + P+ M++T+ PKIER A++G R+V+ S
Sbjct: 418 LDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG--TEREVLFFSG 475
Query: 263 IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINLELYCNVF 315
+ P +A+D L+W D L IE D G R+V +I + VF
Sbjct: 476 LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVF 528
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 72.5 bits (177), Expect = 5e-14
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 11/174 (6%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHN 168
I ++ L + V + KDL+ A+ + + WT+ G + I DG+
Sbjct: 104 IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----T 159
Query: 169 VITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
+ + +GL ID+ +LYWTD +TN +E S++ G R+V+ +D+ P +
Sbjct: 160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI-ADDLPHPFGLTQYQD 218
Query: 229 DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282
++WTDW IER N + I+ + + I + ++R W +
Sbjct: 219 Y--IYWTDWSR-RSIER--ANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNE 267
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 2e-08
Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 11/145 (7%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 169
I A L + V L + A+ + + W D I G N + +
Sbjct: 458 IERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN---RIVL 514
Query: 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229
+ ++ P GL + LYW D + +E + G++ + I Q I V +
Sbjct: 515 EDSNILQPVGLTVF--ENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKEL 572
Query: 230 SIMFWTDWGEVPKIERGAMNGDPRH 254
++ + NG H
Sbjct: 573 NLQEYRQH------PCAQDNGGCSH 591
|
| >3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 8e-42
Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
+G + L+ PKT +NF+ E G+ Y +KFHR I++FMIQGGD T G GTGG+
Sbjct: 29 VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK 88
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G+ F DE FK H G G +SMAN+G +TN SQ
Sbjct: 89 SIYGERFPDENFK--LKHYGPGWVSMANAGKDTNGSQ 123
|
| >2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 1e-41
Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
G I +EL ++ P+T ENF C E G+ Y+ FHR I FM QGGD G GTGG+
Sbjct: 24 AGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGK 83
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G+ F+DE F+ H G GVLSMANSGPNTN SQ
Sbjct: 84 SIYGRKFDDENFQ--LRHEGFGVLSMANSGPNTNGSQ 118
|
| >2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 1e-41
Identities = 50/98 (51%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 302 SLGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGG 357
+G I L+ PKT +NF + C G Y + FHR I NFMIQGGD T G GTGG
Sbjct: 20 KVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGG 79
Query: 358 ESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G F DE F H +G+LSMAN+GPNTN SQ
Sbjct: 80 RSIYGDKFADENFS--RKHDKKGILSMANAGPNTNGSQ 115
|
| >2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-41
Identities = 53/97 (54%), Positives = 62/97 (63%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
G I + L +V P T ENF C E G+ + G+ FHR I FM QGGD T GTGG+
Sbjct: 25 AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGK 84
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+GK F+DE F HTG G+LSMANSGPNTN SQ
Sbjct: 85 SIYGKKFDDENFI--LKHTGPGLLSMANSGPNTNGSQ 119
|
| >2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-41
Identities = 61/104 (58%), Positives = 68/104 (65%), Gaps = 14/104 (13%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY--------YNGTKFHRSIRNFMIQGGDPT- 351
G I +ELY +V PKT NF C ENG + G+KFHR I NFMIQGGD T
Sbjct: 17 SGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTR 76
Query: 352 GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G GTGGESI+G+ F DE FK HTG GVLSMAN+GPNTN SQ
Sbjct: 77 GNGTGGESIYGEKFPDENFK--EKHTGPGVLSMANAGPNTNGSQ 118
|
| >2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-41
Identities = 54/97 (55%), Positives = 62/97 (63%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
LG + LEL +V PKT ENF C E G+ Y G+ FHR I +FM Q GD T GTGG+
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G F DE F H G GVLSMAN+GPNTN SQ
Sbjct: 77 SIYGSRFPDENFT--LKHVGPGVLSMANAGPNTNGSQ 111
|
| >2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-41
Identities = 54/104 (51%), Positives = 61/104 (58%), Gaps = 14/104 (13%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY--------YNGTKFHRSIRNFMIQGGDPT- 351
G I +EL+ + P T ENF C E G Y G+ FHR I FMIQGGD T
Sbjct: 33 AGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTR 92
Query: 352 GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G GTGGESI+G F DE F YTH +LSMAN+GPNTN SQ
Sbjct: 93 GDGTGGESIYGSKFRDENFV--YTHDAPFLLSMANAGPNTNGSQ 134
|
| >3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-41
Identities = 48/97 (49%), Positives = 60/97 (61%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
LG I ++L ++ PKT +NF C G Y G+ FHR I FM+QGGD T GTGG
Sbjct: 41 LGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGR 100
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G+ F DE F+ HT G+LSMAN G +TN SQ
Sbjct: 101 SIYGEKFPDENFE--LKHTKEGILSMANCGAHTNGSQ 135
|
| >3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 3e-41
Identities = 47/97 (48%), Positives = 61/97 (62%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
G I +LY PKT +NF + ++G+ Y + FHR I FM+QGGD T GTGG+
Sbjct: 16 EGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGK 75
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G+ F DE F+ HT G+LSMAN+G NTN SQ
Sbjct: 76 SIYGEKFADENFQ--VKHTKPGLLSMANAGANTNGSQ 110
|
| >3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 4e-41
Identities = 53/97 (54%), Positives = 64/97 (65%), Gaps = 7/97 (7%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
LG ++ EL+ + PKT ENF E G+ Y G+ FHR I FM QGGD T GTGG+
Sbjct: 36 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 95
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G+ FEDE F HTG G+LSMAN+GPNTN SQ
Sbjct: 96 SIYGEKFEDENFI--LKHTGPGILSMANAGPNTNGSQ 130
|
| >2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 6e-41
Identities = 48/105 (45%), Positives = 60/105 (57%), Gaps = 15/105 (14%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENG---------YYNGTKFHRSIRNFMIQGGDPT 351
G + EL+ +V PKTCENF C E G +Y FHR +++FM+QGGD +
Sbjct: 23 AGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFS 82
Query: 352 -GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G G GGESI+G FEDE F H +LSMAN G +TN SQ
Sbjct: 83 EGNGRGGESIYGGFFEDESFA--VKHNKEFLLSMANRGKDTNGSQ 125
|
| >1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-40
Identities = 50/102 (49%), Positives = 63/102 (61%), Gaps = 12/102 (11%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY------YNGTKFHRSIRNFMIQGGDPT-GT 353
+G + +EL+ +V PKT ENF + C E Y G+ FHR I++FMIQGGD G
Sbjct: 24 VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83
Query: 354 GTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
GTG SI+ PF DE FK H+ G+LSMANSGP+TN Q
Sbjct: 84 GTGVASIYRGPFADENFK--LRHSAPGLLSMANSGPSTNGCQ 123
|
| >1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-40
Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 13/104 (12%)
Query: 302 SLGHINLELYCNVFPKTCENFMKHC--ENG-------YYNGTKFHRSIRNFMIQGGDPT- 351
+ G I EL+ ++ P+TCENF C E +Y + FHR I FM QGGD T
Sbjct: 16 NAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITN 75
Query: 352 GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G G+GGESI+G+ F DE F H G+LSMAN+GPNTN+SQ
Sbjct: 76 GNGSGGESIYGRSFTDENFN--MKHDQPGLLSMANAGPNTNSSQ 117
|
| >1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 1e-40
Identities = 49/102 (48%), Positives = 58/102 (56%), Gaps = 12/102 (11%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY------YNGTKFHRSIRNFMIQGGDPT-GT 353
LG EL+ N+ PKT ENF + C E Y T FHR I+ FMIQGGD
Sbjct: 73 LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132
Query: 354 GTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G+G SI+G+ F+DE F H G+LSMANSGPNTN Q
Sbjct: 133 GSGSLSIYGEKFDDENFD--IKHDKEGLLSMANSGPNTNGCQ 172
|
| >1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 2e-40
Identities = 53/105 (50%), Positives = 64/105 (60%), Gaps = 15/105 (14%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENG---------YYNGTKFHRSIRNFMIQGGDPT 351
G I +ELY ++ P+TC NF+ C G +Y G+ FHR I+NFMIQGGD T
Sbjct: 20 AGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFT 79
Query: 352 -GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G GTGGESI+G F+DE F H V+SMAN GPNTN SQ
Sbjct: 80 KGDGTGGESIYGGMFDDEEFV--MKHDEPFVVSMANKGPNTNGSQ 122
|
| >2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-40
Identities = 48/105 (45%), Positives = 63/105 (60%), Gaps = 15/105 (14%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY---------YNGTKFHRSIRNFMIQGGDPT 351
+G I +L+ ++ PKTC+NF+ C E G Y G+ FHR ++NFMIQGGD +
Sbjct: 33 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS 92
Query: 352 -GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
G G GGESI+G F+DE F H +LSMAN G +TN SQ
Sbjct: 93 EGNGKGGESIYGGYFKDENFI--LKHDRAFLLSMANRGKHTNGSQ 135
|
| >1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 8e-40
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
V T+ G I ++ + + P+T +NF+ +C G+YN T FHR I FMIQGG
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMA-NSGPNTNTSQ 394
+P ++E +T RG L+MA P++ T+Q
Sbjct: 62 KA--TKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQ 97
|
| >3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-39
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
V L T+ G I LEL PKT ENF+ + + G+Y+GT FHR I FMIQGG
Sbjct: 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGLKQ 65
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMA-NSGPNTNTSQ 394
+ P +E + ++MA + P++ T+Q
Sbjct: 66 KPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQ 101
|
| >2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-39
Identities = 50/97 (51%), Positives = 61/97 (62%), Gaps = 8/97 (8%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGE 358
LG I + L+ P T ENF + C E+G+ Y + FHR I+NFMIQGGD T GTGG+
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 359 SIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
SI+G+ F DE H G LSMAN+GPNTN SQ
Sbjct: 85 SIYGEKFADENLN--VKHF-VGALSMANAGPNTNGSQ 118
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 7e-38
Identities = 53/105 (50%), Positives = 65/105 (61%), Gaps = 15/105 (14%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENG---------YYNGTKFHRSIRNFMIQGGDPT 351
+G I LEL+ ++ PKT ENF C E G ++ G FHR I+ FMIQGGD +
Sbjct: 29 VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88
Query: 352 -GTGTGGESIWGKPFEDE-FKPNYTHTGRGVLSMANSGPNTNTSQ 394
GTGGESI+G+ FEDE F Y H G+LSMAN+G NTN SQ
Sbjct: 89 NQNGTGGESIYGEKFEDENFH--YKHDKEGLLSMANAGSNTNGSQ 131
|
| >1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-37
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
V L TS G+I LEL P + +NF+ + +G+YN T FHR I FMIQGG T
Sbjct: 7 VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ 66
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMA-NSGPNTNTSQ 394
+ P ++E +T RG ++MA + ++ TSQ
Sbjct: 67 KKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQ 102
|
| >2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-36
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 27/119 (22%)
Query: 303 LGHINLELYCNVFPKTCENFMKHC--ENG------------------YYNGTKFHRSIRN 342
+G + ++L+ + FP ENF++ + Y G KFH + N
Sbjct: 28 IGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHN 87
Query: 343 FMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYT--HTGRGVLSMA----NSGPNTNTSQ 394
I GD G+ +++ +Y H +G+LS+ SG S
Sbjct: 88 NYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDST 146
|
| >3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 1e-27
Identities = 23/124 (18%), Positives = 39/124 (31%), Gaps = 28/124 (22%)
Query: 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG- 356
+ L P T NF+ E +Y+G + R F++Q GDP G G
Sbjct: 182 NPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQR-SDGFVVQTGDPEGPAEGF 240
Query: 357 --------------------GESIWGKPFED----EFKPNYTHTGRGVLSMANSG--PNT 390
+G E+ + + G ++MA ++
Sbjct: 241 IDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDS 300
Query: 391 NTSQ 394
+SQ
Sbjct: 301 GSSQ 304
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302 | Back alignment and structure |
|---|
Score = 79.4 bits (195), Expect = 9e-17
Identities = 21/176 (11%), Positives = 53/176 (30%), Gaps = 21/176 (11%)
Query: 123 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEM---ISCCTFDGNNVGSKHNVITNGLITPDG 179
L+ I + + + + T+ + DG +
Sbjct: 98 HGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK--------IKNHYL 149
Query: 180 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE 239
+ Y+ + + +L + + Y + +P + D+ +++ D
Sbjct: 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLD----DTNVYYMDVNR 205
Query: 240 VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295
I +N + + V+ ++ I N + + Y G + V+ DG
Sbjct: 206 DNAIVH--VNINNPNPVVLTEANIEHYNVY----GSLIFYQRGGDNPALCVVKNDG 255
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 3e-10
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 47 EISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSD--------------EMPVQ 92
+ D R+ AL + + + + +YP + SLH + + +P
Sbjct: 727 IVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQP 786
Query: 93 ERCSFEKLQPDGAYLLD 109
+ + G YL+D
Sbjct: 787 INATSSLFERYGLYLID 803
|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 4e-10
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 46 PEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQPDGA 105
E++ DDR++ T MD+ + V+ YP L+ L S P R S E+L
Sbjct: 593 AEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDI 652
Query: 106 YLLD 109
YLL+
Sbjct: 653 YLLE 656
|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 8e-10
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 46 PEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQPDGA 105
PEIS D+R++ M + S ++ YP L+ +H +D S +P RCS +L +G
Sbjct: 597 PEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSEEGI 656
Query: 106 YLLD 109
+LL
Sbjct: 657 FLLA 660
|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
Score = 55.0 bits (131), Expect = 3e-08
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 10 QYRPEISLDDRSFALYSATIMDIPSSVVYLYPHLIR--PEISLDDRSFALYSATIMDIPS 67
+Y D +SF L + P YL S D+ +F + T D +
Sbjct: 562 KYADYNKDDPQSFRL-APNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTN 620
Query: 68 SVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQPDGAYLLD 109
S++ + P L S + D P ++P+ LLD
Sbjct: 621 SLIMIQPTLTSFSMEDD-----PQPVLLDSISVKPNTILLLD 657
|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 5e-08
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 10 QYRPEISLDDRSFALYSATIMDIPSSVVYLYPHLIR--PEISLDDRSFALYSATIMDIPS 67
++ D SF S T P + +L S D+ S+ + D+
Sbjct: 560 KFGEYHKDDPSSFRF-SETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQ 618
Query: 68 SVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQPDGAYLLD 109
S++ + P L + P P + D L+D
Sbjct: 619 SLIMIQPILYAYSFSGP-----PEPVLLDSSSILADRILLMD 655
|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
Score = 53.0 bits (126), Expect = 1e-07
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 11/111 (9%)
Query: 10 QYRPEISLDDRSFALYSATIMDIPSSVVYL---YPHLIRPEISLDDRSFALYSATIMDIP 66
Y +S S + +++ P V+ L LDDR +A+ +
Sbjct: 535 AYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLV 594
Query: 67 SSVVYLYPHLISLHVIDPNS--------DEMPVQERCSFEKLQPDGAYLLD 109
+ ++P+L + + P ++ S EKL +GA+L+D
Sbjct: 595 HLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMD 645
|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
Score = 47.7 bits (112), Expect = 5e-06
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 47 EISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSD--------------EMPVQ 92
+ D R+ AL + + + + +YP + SLH + + +P
Sbjct: 611 IVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQP 670
Query: 93 ERCSFEKLQPDGAYLLD 109
+ + G YL+D
Sbjct: 671 INATSSLFERYGLYLID 687
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 7e-06
Identities = 48/406 (11%), Positives = 107/406 (26%), Gaps = 125/406 (30%)
Query: 5 HFQIPQYRPE--ISLDD-------RSFALYSAT--------IMDIPSSVVYLYPHLIRPE 47
+ Y + L + +F L + D S+ + L
Sbjct: 237 LLKSKPY-ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 48 ISLDDRS----FALY-SATIMDIPSSVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQP 102
++L Y D+P V+ P +S+ + E
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-----------IAESIRDGLATW 344
Query: 103 DGAYLLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN 162
D + L+ ++ + + LE + + S+ F +
Sbjct: 345 D--NWKHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRLSV---------------FP-PS 384
Query: 163 VGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL---DGKKRKV----LYWE 215
I L++ W NKL SL K+ + +Y E
Sbjct: 385 A----------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 216 ---DIDQPRAI--ALVPQDSIM-FWTDWGEVPKIERGA--------MNGDPRHRKVIVDS 261
++ A+ ++V +I + +P + ++ +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 262 TIFWPNGIAIDFNNRLLYWIDGRL---------------TFIEVMDYDGYV--------R 298
+F +DF +++ ++ T ++ Y Y+ R
Sbjct: 495 MVF------LDFR-----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 299 LVTSLGH--INLELYCNVFPKTC--ENFMKHCENGYYNGTKFHRSI 340
LV ++ +E T + + + H+ +
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA--HKQV 587
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 42/243 (17%), Positives = 87/243 (35%), Gaps = 45/243 (18%)
Query: 78 SLHVIDPNSDEM----PVQERCSFEKLQPDGAYLL-------DIRIANLSRP-------- 118
++ ID + E+ + +R E+++P L + I+ + +
Sbjct: 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171
Query: 119 --LKPVTIIKDLE---EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG 173
+K T I++ G A+D K+ T+ E+I+ T D + K +
Sbjct: 172 GNIKLKTAIQNTGKMSTGLALDSEGKRLYT--TNADGELITIDTADNKILSRKKLLDDGK 229
Query: 174 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMF 233
+++D ++ + TDS+ ++ V +D + +L + A+ P + +
Sbjct: 230 EHFFINISLDTARQRAFITDSKAAEVLV--VDTRNGNILAKVAAPESLAVLFNPARNEAY 287
Query: 234 WTDWGE--VPKIERGAMNGDPRHRKVIVDSTI---FWPNGIAIDFNNRLLY---WIDGRL 285
T V I D + KV+ T PN +A+ + + LY
Sbjct: 288 VTHRQAGKVSVI-------DAKSYKVV--KTFDTPTHPNSLALSADGKTLYVSVKQKSTK 338
Query: 286 TFI 288
Sbjct: 339 QQE 341
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 395 | |||
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 100.0 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 100.0 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 100.0 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 100.0 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 100.0 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 100.0 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.97 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.96 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.96 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.96 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.95 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.95 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.95 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.95 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.92 | |
| 2fu0_A | 160 | Cyclophilin, putative; PFE0505W, cyclosporin-bindi | 99.92 | |
| 2x7k_A | 166 | Peptidyl-prolyl CIS-trans isomerase-like 1; isomer | 99.91 | |
| 2ok3_A | 161 | Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b | 99.91 | |
| 1zkc_A | 197 | Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr | 99.91 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.91 | |
| 2b71_A | 196 | Cyclophilin-like protein; structural genomics, str | 99.91 | |
| 2a2n_A | 176 | Peptidylprolyl isomerase domain and WD repeat CON; | 99.91 | |
| 2hq6_A | 185 | Serologically defined colon cancer antigen 10; pro | 99.9 | |
| 2poe_A | 185 | Cyclophilin-like protein, putative; cryptosporidiu | 99.9 | |
| 2k7n_A | 203 | Peptidyl-prolyl CIS-trans isomerase-like 1; beta b | 99.9 | |
| 3bo7_A | 201 | Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; | 99.9 | |
| 3bkp_A | 232 | Cyclophilin; malaria, isomerase, structural GENO s | 99.89 | |
| 2z6w_A | 165 | Peptidyl-prolyl CIS-trans isomerase; isomerase-imm | 99.89 | |
| 1w74_A | 191 | Peptidyl-prolyl CIS-trans isomerase A; cyclophilin | 99.89 | |
| 2cmt_A | 172 | Peptidyl-prolyl CIS-trans isomerase E; rotamase ac | 99.88 | |
| 2r99_A | 173 | Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i | 99.88 | |
| 1mzw_A | 177 | Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc | 99.88 | |
| 2haq_A | 172 | Cyclophilin; rotamase, proline, isomerase, CIS-tra | 99.88 | |
| 1a58_A | 177 | Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala | 99.88 | |
| 2wfi_A | 179 | Peptidyl-prolyl CIS-trans isomerase G; phosphoprot | 99.88 | |
| 2igv_A | 173 | Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1 | 99.88 | |
| 2he9_A | 192 | NK-tumor recognition protein; cyclosporin, isomera | 99.88 | |
| 1qng_A | 170 | Peptidyl-prolyl CIS-trans isomerase; isomerase-imm | 99.88 | |
| 3ich_A | 188 | Peptidyl-prolyl CIS-trans isomerase B; beta sandwi | 99.88 | |
| 3pmp_A | 164 | Cyclophilin A; peptidyl prolyl isomerase, isomeras | 99.88 | |
| 2poy_A | 186 | Peptidyl-prolyl CIS-trans isomerase; isomerase-imm | 99.87 | |
| 1z81_A | 229 | Cyclophilin; structural genomics, structural genom | 99.87 | |
| 2c3b_A | 172 | Ppiase, cyclophilin; isomerase, 3D domain swapping | 99.87 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.86 | |
| 4fru_A | 185 | Cyclophilin B, peptidyl-prolyl CIS-trans isomerase | 99.86 | |
| 1lop_A | 164 | Cyclophilin A; rotamase, isomerase-isomerase inhib | 99.85 | |
| 3k2c_A | 193 | Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, | 99.85 | |
| 1v9t_A | 166 | Cyclophilin B; beta barrel, isomerase-isomerase in | 99.85 | |
| 3rdd_A | 184 | Peptidyl-prolyl CIS-trans isomerase A; beta barrel | 99.84 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.84 | |
| 3s6m_A | 167 | Peptidyl-prolyl CIS-trans isomerase; seattle struc | 99.84 | |
| 2ose_A | 234 | Probable peptidyl-prolyl CIS-trans isomerase; cycl | 99.82 | |
| 3rfy_A | 369 | Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; | 99.79 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.74 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.72 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.71 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.69 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.67 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.65 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.64 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.64 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.62 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.61 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.61 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.59 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.57 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.54 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.52 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.46 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.45 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.45 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.44 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.43 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.41 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.41 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.4 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.39 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.39 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.38 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.37 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.37 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.35 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.35 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.33 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.32 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.32 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.31 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 99.28 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.26 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.25 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.24 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.24 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.22 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 99.2 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.19 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 99.17 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.17 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.17 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.17 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.16 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.15 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.12 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 99.11 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.1 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.1 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.1 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.1 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.09 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.08 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.08 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.06 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.05 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.05 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 99.05 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 99.04 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.03 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.03 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.01 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.98 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.97 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.97 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.96 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.95 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 98.92 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.91 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.89 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.88 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 98.87 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.87 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.85 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.82 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.78 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 98.75 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.73 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.72 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.67 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.64 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.63 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.58 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.58 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.55 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.52 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.5 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.5 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.47 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.42 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.41 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.41 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 98.41 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.39 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.38 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.36 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 98.33 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.26 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.2 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.18 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.18 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.16 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.15 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.15 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.09 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.02 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 97.98 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.96 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.93 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.89 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.87 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.87 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 97.85 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 97.83 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.82 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.81 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.79 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.76 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.76 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 97.75 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.75 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.73 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.73 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.72 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.71 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 97.67 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.66 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.66 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.65 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.63 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.62 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.62 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.59 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.57 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.57 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.53 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.51 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.5 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.5 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 97.49 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 97.49 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 97.48 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.46 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 97.45 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 97.39 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.37 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.36 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.36 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.35 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.35 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.34 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.33 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.32 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.29 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 97.28 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.25 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 97.25 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 97.24 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 97.24 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.24 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.21 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 97.2 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 97.2 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.19 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 97.17 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.17 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.1 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 97.1 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.09 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 97.08 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 97.07 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.05 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 97.04 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.01 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 97.01 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.01 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.93 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.93 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 96.92 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 96.87 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.87 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 96.85 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.82 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.81 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.81 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.79 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 96.79 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.73 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 96.71 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 96.67 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 96.66 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 96.63 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.61 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.61 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 96.56 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.55 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.54 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.51 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 96.49 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.48 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 96.48 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 96.4 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 96.39 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 96.37 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 96.36 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.35 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 96.29 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.25 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 96.24 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.22 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.15 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 96.13 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.1 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 96.05 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.03 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 95.99 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 95.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 95.89 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 95.67 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.66 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 95.65 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 95.61 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 95.56 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 95.52 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 95.51 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 95.48 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 95.41 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 95.39 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.33 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 95.32 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 95.29 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 95.28 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 95.28 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 95.27 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 95.27 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 95.09 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 94.99 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 94.98 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 94.86 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 94.83 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 94.78 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 94.68 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 94.66 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 94.64 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 94.56 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 94.55 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 94.48 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.18 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 94.06 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 93.69 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 93.11 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 93.04 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 92.77 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 92.63 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 92.22 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 92.2 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 91.57 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 91.43 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 91.21 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 91.18 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 90.93 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 90.45 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 89.96 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 89.69 | |
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 89.15 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 89.01 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 88.93 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 87.87 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 85.48 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 85.33 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 85.17 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 84.19 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 84.11 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 83.47 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 81.99 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 80.78 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 80.46 |
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=293.47 Aligned_cols=247 Identities=31% Similarity=0.559 Sum_probs=210.5
Q ss_pred ecCCCCCCCCccCcccccccCCCCcee--EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEc
Q psy13629 81 VIDPNSDEMPVQERCSFEKLQPDGAYL--LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF 158 (395)
Q Consensus 81 ~~~~~~~~~~~~~~C~~~~~~~~~~~~--~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~ 158 (395)
.+.+.....++...|+..+..+..++. ++|+++++++ ..++.+++.+..+.||+||+.+++|||+|...++|+++++
T Consensus 63 ~C~~g~~~~~~~~~C~~~~~~~~ll~~~~~~I~~i~l~~-~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~ 141 (400)
T 3p5b_L 63 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR-SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 141 (400)
T ss_dssp CCCTTCCCCTTTSSCCCSTTSCEEEEEETTEEEEECTTS-CSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred eccccccccccccceeeccccceeEEeccceeEEEccCC-cceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEc
Confidence 455666667777889887777766665 4999999988 6677788899999999999999999999999999999999
Q ss_pred cCCCC-CceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEee
Q psy13629 159 DGNNV-GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW 237 (395)
Q Consensus 159 dg~~~-~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~ 237 (395)
+|... .....++...+..|.||||||.+++|||+|...++|.+++++|+.+++++...+..|++||+||..|+||||||
T Consensus 142 ~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~ 221 (400)
T 3p5b_L 142 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW 221 (400)
T ss_dssp ------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEEC
T ss_pred ccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeC
Confidence 98321 13466777788999999999999999999999999999999999999999888999999999999999999999
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeeee-----eecee-eeeee
Q psy13629 238 GEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVT-----SLGHI-NLELY 311 (395)
Q Consensus 238 ~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~t-----~~g~~-~i~Lf 311 (395)
+..++|+++++|| +.+++++...+.+|+||++|+.+++|||+|+..++|++++++|..++.. .++++ +++++
T Consensus 222 ~~~~~I~~~~~dG--~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~ 299 (400)
T 3p5b_L 222 GTPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 299 (400)
T ss_dssp SSSCCEEEEETTS--CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE
T ss_pred CCCCEEEEEeCCC--CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe
Confidence 9778999999999 8888898888999999999999999999999999999999999887662 23455 77776
Q ss_pred eccCCccccceeeeeccceecceeEEEEecCcEEEecCC
Q psy13629 312 CNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDP 350 (395)
Q Consensus 312 ~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~ 350 (395)
.+..||.+|.+..|+.-++
T Consensus 300 --------------------~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 300 --------------------EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp --------------------TTEEEEEESSSCSEEEEES
T ss_pred --------------------CCEEEEecCCCCeEEEEEc
Confidence 6677888877777766553
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-35 Score=286.11 Aligned_cols=245 Identities=33% Similarity=0.720 Sum_probs=214.0
Q ss_pred eecCCCCCCCCccCcccccccCCCCcee--EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEE
Q psy13629 80 HVIDPNSDEMPVQERCSFEKLQPDGAYL--LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCT 157 (395)
Q Consensus 80 ~~~~~~~~~~~~~~~C~~~~~~~~~~~~--~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~ 157 (395)
+.+++...+.++...|+..++.+..++. ++|+++++++ ..++.+.+.+..+.|++||+.++.|||+|...++|+|++
T Consensus 23 C~C~~g~~l~~d~~~C~~~~~~~~ll~~~~~~I~~i~~~g-~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~ 101 (349)
T 3v64_C 23 CWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR-SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRAN 101 (349)
T ss_dssp EECCTTEEECTTSSCEEESSSCCEEEEECBSCEEEECTTS-CCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCccCCCCCCcccccccCceeEeecccceEEEeCCC-CeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEe
Confidence 3456666667788899987776655555 4899999988 667788889999999999999999999999999999999
Q ss_pred ccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEee
Q psy13629 158 FDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW 237 (395)
Q Consensus 158 ~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~ 237 (395)
++|+ ..+.++..++..|.||||||.+++|||+|...++|.+++++|+.+++++...+..|++||+||.+|+|||+||
T Consensus 102 ~~g~---~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~ 178 (349)
T 3v64_C 102 LNGS---NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW 178 (349)
T ss_dssp TTSC---SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC
T ss_pred cCCC---CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc
Confidence 9997 4566777788999999999999999999999999999999999999988778999999999999999999999
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee---eeecee-eeeeeec
Q psy13629 238 GEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV---TSLGHI-NLELYCN 313 (395)
Q Consensus 238 ~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~---t~~g~~-~i~Lf~d 313 (395)
+..++|+++++|| ..+++++...+.+|+||++|+.+++|||+|+..++|++++++|..++. ..+++| +++++
T Consensus 179 ~~~~~I~r~~~dG--~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-- 254 (349)
T 3v64_C 179 GNTPRIEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-- 254 (349)
T ss_dssp SSSCEEEEEETTS--CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--
T ss_pred CCCCEEEEEeCCC--CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--
Confidence 8669999999999 788888888899999999999999999999999999999999987765 335566 77766
Q ss_pred cCCccccceeeeeccceecceeEEEEecCcEEEecCC
Q psy13629 314 VFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDP 350 (395)
Q Consensus 314 ~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~ 350 (395)
++..||.++.+..|+.-++
T Consensus 255 ------------------~~~ly~td~~~~~V~~~~~ 273 (349)
T 3v64_C 255 ------------------EDSLYWTDWHTKSINSANK 273 (349)
T ss_dssp ------------------TTEEEEEETTTTEEEEEET
T ss_pred ------------------CCEEEEecCCCCeEEEEEc
Confidence 7788999988888877664
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-35 Score=306.24 Aligned_cols=246 Identities=34% Similarity=0.627 Sum_probs=209.2
Q ss_pred eecCCCCCCCCccCcccccccCCCCcee--EEEEEeeCCCCC--ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEE
Q psy13629 80 HVIDPNSDEMPVQERCSFEKLQPDGAYL--LDIRIANLSRPL--KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISC 155 (395)
Q Consensus 80 ~~~~~~~~~~~~~~~C~~~~~~~~~~~~--~~I~~~~l~~~~--~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~ 155 (395)
+.|+....+.++...|.. ++++..++. ++|++++++... .....++++.++.||+||+.+++|||+|...++|+|
T Consensus 297 C~C~~g~~l~~d~~~C~~-~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r 375 (619)
T 3s94_A 297 CACPTGVKLLENGKTCKD-GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRR 375 (619)
T ss_dssp EECCTTCCBCTTSSCBCS-SCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EeCCchheecccCcccCC-CCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEE
Confidence 345555656666666665 234444554 489999998732 233445678999999999999999999999999999
Q ss_pred EEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEE
Q psy13629 156 CTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWT 235 (395)
Q Consensus 156 ~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwt 235 (395)
+.++|+ ..++++..++..|.||||||.+++|||||...++|.+++++|+.+++++.+.+.+|++||+||.+|+||||
T Consensus 376 ~~~~g~---~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 376 SFIDGS---GSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp EETTSC---SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEE
T ss_pred EEcCCC---ccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEe
Confidence 999997 55777778889999999999999999999999999999999999999997889999999999999999999
Q ss_pred eeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee---eeecee-eeeee
Q psy13629 236 DWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV---TSLGHI-NLELY 311 (395)
Q Consensus 236 d~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~---t~~g~~-~i~Lf 311 (395)
||+..++|++++||| +.+++++...+.+|+||++|+.+++|||+|+..++|++++++|..++. ..+.+| +++++
T Consensus 453 D~g~~~~I~r~~~dG--~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~ 530 (619)
T 3s94_A 453 DWGEIPKIERAALDG--SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLL 530 (619)
T ss_dssp ECSSSCEEEEEETTS--CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEE
T ss_pred cCCCCCEEEEEccCC--CccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEE
Confidence 999889999999999 888899988899999999999999999999999999999999998876 235566 77777
Q ss_pred eccCCccccceeeeeccceecceeEEEEecCcEEEecCCC
Q psy13629 312 CNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPT 351 (395)
Q Consensus 312 ~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~ 351 (395)
++..||.++.+..|+..++.
T Consensus 531 --------------------~~~ly~tD~~~~~I~~~~k~ 550 (619)
T 3s94_A 531 --------------------GDYVYWTDWQRRSIERVHKR 550 (619)
T ss_dssp --------------------TTEEEEECTTSSCEEEEESS
T ss_pred --------------------CCEEEEeecCCCeEEEEEcC
Confidence 66888888888888777664
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=305.90 Aligned_cols=244 Identities=27% Similarity=0.375 Sum_probs=204.1
Q ss_pred ecCCCCCCCCccCcccccccCCCCcee--EEEEEeeCCCCC--ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEE
Q psy13629 81 VIDPNSDEMPVQERCSFEKLQPDGAYL--LDIRIANLSRPL--KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCC 156 (395)
Q Consensus 81 ~~~~~~~~~~~~~~C~~~~~~~~~~~~--~~I~~~~l~~~~--~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~ 156 (395)
.|+....+.++...|.. +.+..+|. ++|+++.++... .....+.+++++.+|+||+.+++|||+|...++|+|+
T Consensus 290 ~C~~g~~l~~d~~~C~~--~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~ 367 (628)
T 4a0p_A 290 GCPAHYSLNADNRTCSA--PTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKA 367 (628)
T ss_dssp ECSTTCEECTTSSCEEC--CSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EcCCCcEecccCCcCcc--ccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEE
Confidence 44455555555555653 23334444 388888887632 2445567889999999999999999999999999999
Q ss_pred EccCCCCCceEEEEeC------CCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCC
Q psy13629 157 TFDGNNVGSKHNVITN------GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDS 230 (395)
Q Consensus 157 ~~dg~~~~~~~~i~~~------~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g 230 (395)
.++|+ ..++++.. .+..|.||||||++++|||||...++|.+++++|+.+++++...+.+|++|||||.+|
T Consensus 368 ~~~g~---~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g 444 (628)
T 4a0p_A 368 QEDGS---QGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKG 444 (628)
T ss_dssp ETTSC---SCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTT
T ss_pred EcCCC---CceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCC
Confidence 99997 44455544 5778999999999999999999999999999999999999878899999999999999
Q ss_pred eEEEEeeCCCC-eEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee---eeecee
Q psy13629 231 IMFWTDWGEVP-KIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV---TSLGHI 306 (395)
Q Consensus 231 ~LYwtd~~~~~-~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~---t~~g~~ 306 (395)
+||||||+..+ +|++++||| +.+++++.+.+.+|+||++|+.+++|||+|+..++|+++++||..++. ..+.+|
T Consensus 445 ~ly~tD~g~~~~~I~r~~~dG--~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P 522 (628)
T 4a0p_A 445 YMYFTNLQERSPKIERAALDG--TEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQP 522 (628)
T ss_dssp EEEEEEEETTEEEEEEEETTS--CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCE
T ss_pred eEEEeecCCCCCeEEEEeCCC--CCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCc
Confidence 99999999664 999999999 889999998999999999999999999999999999999999999877 235566
Q ss_pred -eeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCC
Q psy13629 307 -NLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPT 351 (395)
Q Consensus 307 -~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~ 351 (395)
++++| ++..||.++....|+..++.
T Consensus 523 ~glav~--------------------~~~ly~tD~~~~~i~~~~k~ 548 (628)
T 4a0p_A 523 VGLTVF--------------------ENWLYWIDKQQQMIEKIDMT 548 (628)
T ss_dssp EEEEEE--------------------TTEEEEEETTTTEEEEEETT
T ss_pred EEEEEE--------------------CCEEEEEECCCCeEEEEECc
Confidence 88877 78899999999888887764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=278.19 Aligned_cols=228 Identities=43% Similarity=0.843 Sum_probs=197.8
Q ss_pred ccCCCCcee--EEEEEeeCCCCC-ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCC
Q psy13629 99 KLQPDGAYL--LDIRIANLSRPL-KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLI 175 (395)
Q Consensus 99 ~~~~~~~~~--~~I~~~~l~~~~-~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~ 175 (395)
+++|..+|. ++|+++++++.. .++.++..++.+.+|+||+.+++|||+|...++|+|++++|+. ..+.++..++.
T Consensus 2 g~~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~--~~~~~~~~~l~ 79 (318)
T 3sov_A 2 GSAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--SVQNVVVSGLL 79 (318)
T ss_dssp --CCEEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSS--CCCEEEEECCS
T ss_pred CCccEEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCC--ceEEEEcCCCC
Confidence 455655665 599999999843 5777888889999999999999999999999999999999863 23456667788
Q ss_pred CcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce
Q psy13629 176 TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR 255 (395)
Q Consensus 176 ~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~ 255 (395)
.|.|||+||.+++|||+|...++|.+++++|..+++++...+..|++|++||.+|+|||+||+..++|+++++|| +.+
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG--~~~ 157 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG--SSR 157 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS--CSC
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC--CCe
Confidence 999999999999999999999999999999999999887889999999999999999999998789999999999 788
Q ss_pred EEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee---eeecee-eeeeeeccCCccccceeeeecccee
Q psy13629 256 KVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV---TSLGHI-NLELYCNVFPKTCENFMKHCENGYY 331 (395)
Q Consensus 256 ~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~---t~~g~~-~i~Lf~d~ap~t~~nf~~l~~~g~y 331 (395)
++++...+.+|+||++|+.+++|||+|+..++|++++++|..++. ..+++| +++++
T Consensus 158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-------------------- 217 (318)
T 3sov_A 158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-------------------- 217 (318)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--------------------
T ss_pred EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--------------------
Confidence 888888899999999999999999999999999999999988765 245566 77776
Q ss_pred cceeEEEEecCcEEEecCC
Q psy13629 332 NGTKFHRSIRNFMIQGGDP 350 (395)
Q Consensus 332 ~~~~~~r~~~~~~iq~g~~ 350 (395)
.+..||.++.+..|..-++
T Consensus 218 ~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 218 EDILYWTDWSTHSILACNK 236 (318)
T ss_dssp TTEEEEEETTTTEEEEEET
T ss_pred CCEEEEEecCCCeEEEEEC
Confidence 5677888887777776665
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=282.15 Aligned_cols=244 Identities=34% Similarity=0.724 Sum_probs=211.9
Q ss_pred ecCCCCCCCCccCcccccccCCCCcee--EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEc
Q psy13629 81 VIDPNSDEMPVQERCSFEKLQPDGAYL--LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF 158 (395)
Q Consensus 81 ~~~~~~~~~~~~~~C~~~~~~~~~~~~--~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~ 158 (395)
.+++...+.++...|+..++.+..++. ++|+++++++ ...+.+++.+..+.|++||+.+++|||+|...++|+++++
T Consensus 67 ~C~~g~~l~~d~~~C~~~~~~~~l~~~~~~~I~~i~~~~-~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~ 145 (386)
T 3v65_B 67 WCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR-SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANL 145 (386)
T ss_dssp ECCTTEEECTTSSCEEECSSCCEEEEECBSCEEEECTTS-CCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EECCCceEcCCCCeECCccccceeEeecCccceeeccCC-CcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 455666566677889887665545444 4899999988 6677888899999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC
Q psy13629 159 DGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG 238 (395)
Q Consensus 159 dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~ 238 (395)
+|+ ..+.++..++..|.||||||.+++|||+|...++|.+++++|+.+++++...+..|++|++||.+|+|||+||+
T Consensus 146 ~g~---~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 146 NGS---NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp TSC---CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS
T ss_pred CCC---CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC
Confidence 997 55677777889999999999999999999999999999999999999987788999999999999999999998
Q ss_pred CCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee---eeecee-eeeeeecc
Q psy13629 239 EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV---TSLGHI-NLELYCNV 314 (395)
Q Consensus 239 ~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~---t~~g~~-~i~Lf~d~ 314 (395)
..++|+++++|| ..++.++...+.+|+||++|+.+++|||+|+..++|++++++|..++. ..+++| +++++
T Consensus 223 ~~~~I~r~~~dG--~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--- 297 (386)
T 3v65_B 223 NTPRIEASSMDG--SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--- 297 (386)
T ss_dssp SSCEEEEEETTS--CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE---
T ss_pred CCCEEEEEeCCC--CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE---
Confidence 669999999999 788888888899999999999999999999999999999999987765 335566 77776
Q ss_pred CCccccceeeeeccceecceeEEEEecCcEEEecCC
Q psy13629 315 FPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDP 350 (395)
Q Consensus 315 ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~ 350 (395)
++..||.+|.+..|+.-++
T Consensus 298 -----------------~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 298 -----------------EDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp -----------------TTEEEEEETTTTEEEEEET
T ss_pred -----------------CCEEEEeeCCCCeEEEEEC
Confidence 6788888888877776653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=305.44 Aligned_cols=246 Identities=31% Similarity=0.560 Sum_probs=207.4
Q ss_pred cCCCCCCCCccCcccccccCCCCcee--EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEcc
Q psy13629 82 IDPNSDEMPVQERCSFEKLQPDGAYL--LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD 159 (395)
Q Consensus 82 ~~~~~~~~~~~~~C~~~~~~~~~~~~--~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~d 159 (395)
+.+...+.++...|+..+..+..++. ++|+++++++ ..++.++..++.+.||+||+.+++|||+|...++|+++.++
T Consensus 376 C~~Gy~l~~~~~~C~~~~~~p~Ll~an~~~Ir~i~l~~-~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~ 454 (791)
T 3m0c_C 376 CEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR-SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 454 (791)
T ss_dssp CCSSEECCSSCCCCEETTSCCEEEEECBSSEEEECTTS-CCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred cCCCCEeCCCCceeeecccccccccccccceeEeeccC-CcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEecc
Confidence 34444455666778887666655554 4889999988 67788888999999999999999999999999999999999
Q ss_pred CCCC-CceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC
Q psy13629 160 GNNV-GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG 238 (395)
Q Consensus 160 g~~~-~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~ 238 (395)
|... .....++...+..|.||||||.+++|||+|...++|.|++++|+.+++++...+..|++|||||.+|+||||||+
T Consensus 455 g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g 534 (791)
T 3m0c_C 455 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 534 (791)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS
T ss_pred CCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC
Confidence 8421 134566666899999999999999999999999999999999999999998889999999999999999999999
Q ss_pred CCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeeeee-----ecee-eeeeee
Q psy13629 239 EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTS-----LGHI-NLELYC 312 (395)
Q Consensus 239 ~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~t~-----~g~~-~i~Lf~ 312 (395)
..++|++++|+| +.+++++...+.+|+||+||+.+++|||+|+..++|++++++|..++... +.++ +|+++
T Consensus 535 ~~~~I~~~~~dG--~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~- 611 (791)
T 3m0c_C 535 TPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF- 611 (791)
T ss_dssp SSCEEEEEETTS--CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-
T ss_pred CCCeEEEEecCC--CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe-
Confidence 778999999999 88999999899999999999999999999999999999999999887621 3344 66666
Q ss_pred ccCCccccceeeeeccceecceeEEEEecCcEEEecCC
Q psy13629 313 NVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDP 350 (395)
Q Consensus 313 d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~ 350 (395)
.+.+||.++.+..|+..++
T Consensus 612 -------------------~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 612 -------------------EDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp -------------------TTEEEEEETTTTEEEEEET
T ss_pred -------------------CCEEEEEECCCCEEEEEeC
Confidence 6788888888888877664
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=296.07 Aligned_cols=227 Identities=35% Similarity=0.645 Sum_probs=196.5
Q ss_pred ccCCCCcee--EEEEEeeCCCCCc-cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCC
Q psy13629 99 KLQPDGAYL--LDIRIANLSRPLK-PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLI 175 (395)
Q Consensus 99 ~~~~~~~~~--~~I~~~~l~~~~~-~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~ 175 (395)
.|++.++|. ++|+++++++... ....+..++.+.||+||+.+++|||+|...++|+|++++|+ ..++++..++.
T Consensus 4 ~p~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~---~~~~v~~~g~~ 80 (628)
T 4a0p_A 4 VPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS---ALEHVVEFGLD 80 (628)
T ss_dssp -CCCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCS
T ss_pred CCCcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC---CcEEEEeCCCC
Confidence 455556666 4899999988322 22334578899999999999999999999999999999997 55777777888
Q ss_pred CcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce
Q psy13629 176 TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR 255 (395)
Q Consensus 176 ~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~ 255 (395)
.|.||||||.+++|||+|...++|.+++++|+.+++++...+..|++||+||.+|+||||||+..++|++++||| +.+
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG--~~~ 158 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG--SER 158 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CSC
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC--Cce
Confidence 999999999999999999999999999999999999987889999999999999999999999889999999999 788
Q ss_pred EEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee--eeecee-eeeeeeccCCccccceeeeeccceec
Q psy13629 256 KVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV--TSLGHI-NLELYCNVFPKTCENFMKHCENGYYN 332 (395)
Q Consensus 256 ~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~--t~~g~~-~i~Lf~d~ap~t~~nf~~l~~~g~y~ 332 (395)
++++. .+.+|+||++|+.+++|||+|...++|++++++|..++. ..+.+| ++++| .
T Consensus 159 ~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~--------------------~ 217 (628)
T 4a0p_A 159 TTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQY--------------------Q 217 (628)
T ss_dssp EEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEE--------------------T
T ss_pred EEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEE--------------------C
Confidence 87775 788999999999999999999999999999999987754 345556 77777 6
Q ss_pred ceeEEEEecCcEEEecCCC
Q psy13629 333 GTKFHRSIRNFMIQGGDPT 351 (395)
Q Consensus 333 ~~~~~r~~~~~~iq~g~~~ 351 (395)
+..||.+|.+..|...|+.
T Consensus 218 ~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 218 DYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp TEEEEEETTTTEEEEEETT
T ss_pred CEEEEecCCCCEEEEEECC
Confidence 7888888888888777654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=294.11 Aligned_cols=220 Identities=44% Similarity=0.868 Sum_probs=185.1
Q ss_pred EEEEEeeCCCCC-ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 108 LDIRIANLSRPL-KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 108 ~~I~~~~l~~~~-~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
++|+++++++.. +++.+++.++.+.||+||+.++.|||+|...++|+|+.++|.. ..++++..++..|+||||||.+
T Consensus 18 ~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~--~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 18 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--SVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CEEEECSSCSCEEEEEEETTT
T ss_pred ccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC--ceEEEEeCCCCCcCeEEEEecC
Confidence 699999998843 5778889999999999999999999999999999999999862 2366777788999999999999
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
++|||+|...++|.+++++|+.+++++...+..|++||+||.+|+||||||+..++|+|+++|| +.+++++...+.+|
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG--~~~~~l~~~~~~~P 173 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG--SSRFIIINSEIYWP 173 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS--CSCEEEECSSCSSE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC--CceEEEEeCCCCCC
Confidence 9999999999999999999999999987889999999999999999999999889999999999 88999998889999
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccceeee---eeecee-eeeeeeccCCccccceeeeeccceecceeEEEEecC
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV---TSLGHI-NLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRN 342 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~---t~~g~~-~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~ 342 (395)
+||++|+.+++|||+|...++|++++++|..++. ..+.+| ++++| .+..||.+|.+
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~--------------------~~~ly~td~~~ 233 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--------------------EDILYWTDWST 233 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEES--------------------SSEEEEECTTT
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEe--------------------CCEEEEecCCC
Confidence 9999999999999999999999999999988876 245566 77777 55778888887
Q ss_pred cEEEecCCC
Q psy13629 343 FMIQGGDPT 351 (395)
Q Consensus 343 ~~iq~g~~~ 351 (395)
..|+.-++.
T Consensus 234 ~~V~~~d~~ 242 (619)
T 3s94_A 234 HSILACNKY 242 (619)
T ss_dssp CSEEEEESS
T ss_pred CEEEEEECC
Confidence 777766653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=261.93 Aligned_cols=220 Identities=34% Similarity=0.635 Sum_probs=185.4
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC-CceEEEEeCCCCCcceEEEecCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-GSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~-~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
++|+++++++ ..++.+++.+..+.|++||+.+++|||+|...++|++++++|... ...+.++...+..|.|||+||.+
T Consensus 10 ~~I~~i~~~~-~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 10 HEVRKMTLDR-SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp SSEEEEETTS-CCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCC-cceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 4799999988 566777888999999999999999999999999999999997210 03345555677899999999999
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
++|||+|...++|.+++++|+.+++++...+..|++|++||.+|+|||+||+..++|+++++|| +.+++++...+.+|
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG--~~~~~~~~~~~~~P 166 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVTENIQWP 166 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CCEEEEECSSCSCE
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC--CCeEEEEECCCCCc
Confidence 9999999999999999999999988887788999999999999999999998558999999999 78888887788999
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccceeee--e---eecee-eeeeeeccCCccccceeeeeccceecceeEEEEe
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV--T---SLGHI-NLELYCNVFPKTCENFMKHCENGYYNGTKFHRSI 340 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~--t---~~g~~-~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~ 340 (395)
+||++|+.+++|||+|...++|++++++|..++. . ..++| +++++ .+..||.++
T Consensus 167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--------------------~~~ly~~d~ 226 (316)
T 1ijq_A 167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--------------------EDKVFWTDI 226 (316)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--------------------TTEEEEEET
T ss_pred eEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--------------------CCEEEEEEC
Confidence 9999999999999999999999999999987765 1 13445 66666 567777777
Q ss_pred cCcEEEecCC
Q psy13629 341 RNFMIQGGDP 350 (395)
Q Consensus 341 ~~~~iq~g~~ 350 (395)
.+..|+.-++
T Consensus 227 ~~~~V~~~~~ 236 (316)
T 1ijq_A 227 INEAIFSANR 236 (316)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEEeC
Confidence 7766665554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=275.07 Aligned_cols=228 Identities=32% Similarity=0.588 Sum_probs=188.2
Q ss_pred ecCCCCCCCCccCcccccccCCCCcee--EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEc
Q psy13629 81 VIDPNSDEMPVQERCSFEKLQPDGAYL--LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTF 158 (395)
Q Consensus 81 ~~~~~~~~~~~~~~C~~~~~~~~~~~~--~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~ 158 (395)
.+++...+.++...|...+..+..++. ++|+++++++ ..++.++..++.+.||+||+.+++|||+|...++|+++++
T Consensus 357 ~C~~G~~~~~~~~~C~~~~~~~~ll~~~~~~I~~id~~~-~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~ 435 (699)
T 1n7d_A 357 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR-SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 435 (699)
T ss_dssp CCCSSCBCCSSCCCCBCCSSCCCBCCCCTTC-CEECTTS-CCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEES
T ss_pred eeecccccCCCCCcccccccceeEEecCccceEEEeCCC-CcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEec
Confidence 344555555666778877666666665 4889999987 6677778889999999999999999999999999999999
Q ss_pred cCCCC-CceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEee
Q psy13629 159 DGNNV-GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW 237 (395)
Q Consensus 159 dg~~~-~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~ 237 (395)
++... .....++...+..|.||||||.+++|||+|...++|.+++++|..+++++...+..|++|||||..|+|||+||
T Consensus 436 ~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~ 515 (699)
T 1n7d_A 436 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDW 515 (699)
T ss_dssp CCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCC
T ss_pred CCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEccc
Confidence 97210 02334455567889999999999999999999999999999999998888777899999999999999999999
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeeee-----eecee-eeeee
Q psy13629 238 GEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVT-----SLGHI-NLELY 311 (395)
Q Consensus 238 ~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~t-----~~g~~-~i~Lf 311 (395)
+...+|++++++| ..+++++...+.+|+||++|+.+++|||+|+..++|++++++|..++.. .++++ +++++
T Consensus 516 ~~~~~I~~~~~dG--~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd 593 (699)
T 1n7d_A 516 GTPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF 593 (699)
T ss_dssp SSSCCEEBCCSSS--CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE
T ss_pred CCCCeEEEEeCCC--CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEE
Confidence 8668999999999 7787888888899999999999999999999999999999999877651 13445 67766
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-28 Score=234.40 Aligned_cols=197 Identities=24% Similarity=0.419 Sum_probs=172.5
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|.++++++......+...+..|.||++|+.+++|||+|...++|.+++++|. ....++...+..|+|||||+.++.
T Consensus 96 ~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---~~~~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 96 RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---HRKVLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp EEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECTTCSCEEEEEEETTTTE
T ss_pred ceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC---ceEEEEeCCCCCcceEEEecCcCe
Confidence 67889998844445566678899999999999999999999999999999997 456667778899999999999999
Q ss_pred EEEEeCCC-CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 189 LYWTDSET-NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 189 LYwtd~~~-~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
|||+|... ++|++++++|..+++++...+..|+||++||.+++|||+|++ ..+|++++++| ..++.++...+.+|.
T Consensus 173 ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~-~~~I~~~~~dG--~~~~~~~~~~~~~P~ 249 (349)
T 3v64_C 173 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK-HHVIERANLDG--SHRKAVISQGLPHPF 249 (349)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTS--CSCEEEECSSCSSEE
T ss_pred EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC-CCEEEEEeCCC--CceEEEEeCCCCCce
Confidence 99999988 999999999999998887789999999999999999999976 68999999999 788888888889999
Q ss_pred eEEEeccccEEEEeccceeeeeeec-cccceeee--eeecee-eeeeeec
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMD-YDGYVRLV--TSLGHI-NLELYCN 313 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~-~dG~~~~~--t~~g~~-~i~Lf~d 313 (395)
||+++ +++|||+|+..++|.+++ .+|..+.. .....| ++++|..
T Consensus 250 giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~ 297 (349)
T 3v64_C 250 AITVF--EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 297 (349)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECG
T ss_pred EEEEE--CCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEcc
Confidence 99996 789999999999999998 78877665 344555 7777744
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-27 Score=227.06 Aligned_cols=198 Identities=19% Similarity=0.361 Sum_probs=171.6
Q ss_pred EEEEeeCCCCC-ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPL-KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~-~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.|.++++++.. ....+...+..|.||++|+.++.|||+|...++|.+++++|. ....++...+..|.|||||+.++
T Consensus 58 ~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---~~~~l~~~~~~~P~giavdp~~g 134 (318)
T 3sov_A 58 AIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS---LRKVLFWQELDQPRAIALDPSSG 134 (318)
T ss_dssp EEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEEGGGT
T ss_pred cEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC---cEEEEEeCCCCCccEEEEeCCCC
Confidence 57888888743 245666778899999999999999999999999999999997 45666668889999999999999
Q ss_pred eEEEEeCC-CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 188 KLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 188 ~LYwtd~~-~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
.|||+|.. .++|++++++|+.+++++...+..|+||++|+.+++|||+|+. ..+|+++++|| ..+++++...+..|
T Consensus 135 ~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~-~~~I~~~d~dG--~~~~~~~~~~~~~P 211 (318)
T 3sov_A 135 FMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK-LNFIHKSNLDG--TNRQAVVKGSLPHP 211 (318)
T ss_dssp EEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTS--CSCEEEECSCCSCE
T ss_pred EEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECC-CCEEEEEcCCC--CceEEEecCCCCCc
Confidence 99999965 7899999999999998887789999999999999999999955 78999999999 78888887778899
Q ss_pred eeEEEeccccEEEEeccceeeeeeecc-ccceeee--eeecee-eeeeeecc
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDY-DGYVRLV--TSLGHI-NLELYCNV 314 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~-dG~~~~~--t~~g~~-~i~Lf~d~ 314 (395)
.||++| +++|||+|+..++|.+++. +|..... ....+| .+++|...
T Consensus 212 ~glav~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~~ 261 (318)
T 3sov_A 212 FALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQ 261 (318)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEEECGG
T ss_pred eEEEEe--CCEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEEeccc
Confidence 999998 7899999999999999998 6766544 444566 88888654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=251.96 Aligned_cols=199 Identities=22% Similarity=0.333 Sum_probs=166.2
Q ss_pred EEEEeeCCCC----CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRP----LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~----~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.|+++++++. ....++...+..|.|||+|+.+++|||+|...++|.+++++|. .+.+++...+..|.|||||+
T Consensus 447 ~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~---~~~~l~~~~l~~P~gIaVDp 523 (791)
T 3m0c_C 447 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDP 523 (791)
T ss_dssp EEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEET
T ss_pred eEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC---eEEEEEeCCCCCcceEEEec
Confidence 5778888762 2234444588999999999999999999999999999999997 56777778899999999999
Q ss_pred CCCeEEEEeCCC-CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC-
Q psy13629 185 LTEKLYWTDSET-NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST- 262 (395)
Q Consensus 185 ~~~~LYwtd~~~-~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~- 262 (395)
.+++|||||.+. ++|++++++|+.+++++...+.+|+|||||+.+++|||+|++ ..+|++++++| ..+++++...
T Consensus 524 ~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~-~~~I~~~d~dG--~~~~~v~~~~~ 600 (791)
T 3m0c_C 524 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNG--GNRKTILEDEK 600 (791)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTS--CSCEEEEECTT
T ss_pred CCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC-CCcEEEEecCC--CceEEEecCCC
Confidence 999999999876 899999999999999998889999999999999999999965 78999999999 7888888764
Q ss_pred -CcCceeEEEeccccEEEEeccceeeeeeec-cccceeee--eeecee-eeeeeeccC
Q psy13629 263 -IFWPNGIAIDFNNRLLYWIDGRLTFIEVMD-YDGYVRLV--TSLGHI-NLELYCNVF 315 (395)
Q Consensus 263 -~~~P~glalD~~~~rLYwaD~~~~~I~~~~-~dG~~~~~--t~~g~~-~i~Lf~d~a 315 (395)
+.+|.||++ ++++|||+|+..++|.+++ .+|..+.. ..+..+ .|.+|....
T Consensus 601 ~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~ 656 (791)
T 3m0c_C 601 RLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT 656 (791)
T ss_dssp TTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred ccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeecccc
Confidence 445555555 5889999999999999998 67766655 345556 888886543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=230.71 Aligned_cols=198 Identities=22% Similarity=0.332 Sum_probs=167.8
Q ss_pred EEEEeeCCCC----CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRP----LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~----~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.|+++++++. .....+...+..|.||++|+.+++|||+|...++|.+++++|. ...+++...+..|.|||||+
T Consensus 135 ~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~---~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 135 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp EEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC---SEEEEEECSSCCEEEEEEET
T ss_pred eEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC---ceEEEEeCCCCCcceEEEec
Confidence 5777888762 2344555588999999999999999999999999999999997 56777778899999999999
Q ss_pred CCCeEEEEeCC-CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec--
Q psy13629 185 LTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS-- 261 (395)
Q Consensus 185 ~~~~LYwtd~~-~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~-- 261 (395)
.++.|||+|.. .++|++++++|..+++++...+..|+|||+|+.+++|||+|+. ..+|++++++| ..+++++..
T Consensus 212 ~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~-~~~I~~~d~dG--~~~~~~~~~~~ 288 (400)
T 3p5b_L 212 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNG--GNRKTILEDEK 288 (400)
T ss_dssp TTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTS--CCCEEEEECSS
T ss_pred ccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC-CCEEEEEeCCC--CccEEEEeCCC
Confidence 99999999976 4899999999999999987889999999999999999999955 78999999999 788888764
Q ss_pred CCcCceeEEEeccccEEEEeccceeeeeeec-cccceeee--eeecee-eeeeeecc
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMD-YDGYVRLV--TSLGHI-NLELYCNV 314 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~~~I~~~~-~dG~~~~~--t~~g~~-~i~Lf~d~ 314 (395)
.+.+|.||+++ +++|||+|+..++|.+++ .+|..+.. ....+| .+.+|...
T Consensus 289 ~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~ 343 (400)
T 3p5b_L 289 RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL 343 (400)
T ss_dssp TTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGG
T ss_pred CCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeec
Confidence 46789999886 889999999999999998 78877655 344555 78887554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=232.40 Aligned_cols=197 Identities=24% Similarity=0.419 Sum_probs=171.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|.++++++.....++...+..|.||++|+.+++|||+|...++|.+++++|. ....++...+..|+|||||+.++.
T Consensus 139 ~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~---~~~~l~~~~l~~P~giavdp~~g~ 215 (386)
T 3v65_B 139 RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---HRKVLLWQSLEKPRAIALHPMEGT 215 (386)
T ss_dssp EEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC---SCEEEECSSCSCEEEEEEETTTTE
T ss_pred cEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC---ceEEeecCCCCCCcEEEEEcCCCe
Confidence 67889988844445566778899999999999999999999999999999987 556677778899999999999999
Q ss_pred EEEEeCCC-CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 189 LYWTDSET-NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 189 LYwtd~~~-~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
|||+|... ++|++++++|+.+++++...+..|+||++||.+++|||+|++ ..+|++++++| ..++.++...+.+|.
T Consensus 216 ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~-~~~I~~~d~dG--~~~~~~~~~~~~~P~ 292 (386)
T 3v65_B 216 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK-HHVIERANLDG--SHRKAVISQGLPHPF 292 (386)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETT-TTEEEEECTTS--CSCEEEECSSCSSEE
T ss_pred EEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECC-CCEEEEEeCCC--CeeEEEEECCCCCce
Confidence 99999887 999999999999999987789999999999999999999965 78999999999 788888888888999
Q ss_pred eEEEeccccEEEEeccceeeeeeec-cccceeee--eeecee-eeeeeec
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMD-YDGYVRLV--TSLGHI-NLELYCN 313 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~-~dG~~~~~--t~~g~~-~i~Lf~d 313 (395)
||+++ +++|||+|+..++|.+++ .+|..+.. .....| ++.+|..
T Consensus 293 giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~ 340 (386)
T 3v65_B 293 AITVF--EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 340 (386)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEESG
T ss_pred EEEEE--CCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEEch
Confidence 99996 789999999999999998 78877665 334455 7777643
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=209.53 Aligned_cols=188 Identities=27% Similarity=0.514 Sum_probs=160.0
Q ss_pred EEEEEeeCCCCCcc-----EEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEE
Q psy13629 108 LDIRIANLSRPLKP-----VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAI 182 (395)
Q Consensus 108 ~~I~~~~l~~~~~~-----~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAV 182 (395)
+.|+++++++.... ..+....+++.|+++|+.++.|||+|...++|.+++++|. ....++..++..|.+|++
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~---~~~~~~~~~~~~p~~ia~ 86 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG---EPTTIIRQDLGSPEGIAL 86 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC---CCEEEECTTCCCEEEEEE
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCC---CcEEEEECCCCCccEEEE
Confidence 47888998873211 1222235678999999999999999999999999999986 345555566789999999
Q ss_pred ecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCC-CCeEEEEecCCCCcceEEEEec
Q psy13629 183 DWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE-VPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 183 D~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~-~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
|+.+++|||+|...++|.+++++|..++.++...+..|++|++||.+++|||+|++. ..+|+++++|| ...+++...
T Consensus 87 d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg--~~~~~~~~~ 164 (267)
T 1npe_A 87 DHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TNRRILAQD 164 (267)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CCCEEEECT
T ss_pred EecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC--CCcEEEEEC
Confidence 999999999999999999999999988887766678999999999999999999763 57999999999 667777767
Q ss_pred CCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
.+.+|+||++|..+++|||+|...++|.+++++|..+..
T Consensus 165 ~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 203 (267)
T 1npe_A 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK 203 (267)
T ss_dssp TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE
T ss_pred CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE
Confidence 778999999998899999999999999999999876544
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=216.45 Aligned_cols=198 Identities=22% Similarity=0.333 Sum_probs=164.1
Q ss_pred EEEEeeCCC----CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSR----PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~----~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.|.++++++ ......+...+..|.||++|+.+++|||+|...++|.+++++|. ...+++...+..|++||||+
T Consensus 53 ~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~---~~~~~~~~~~~~P~~iavdp 129 (316)
T 1ijq_A 53 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDP 129 (316)
T ss_dssp EEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEET
T ss_pred cEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC---ceEEEEECCCCCcceEEeCC
Confidence 678888876 22233344567889999999999999999999999999999986 45666667889999999999
Q ss_pred CCCeEEEEeCCC-CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec--
Q psy13629 185 LTEKLYWTDSET-NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS-- 261 (395)
Q Consensus 185 ~~~~LYwtd~~~-~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~-- 261 (395)
.+++|||+|... ++|++++++|+.+++++...+..|+||++|+.+++|||+|+. ..+|++++++| ..+++++..
T Consensus 130 ~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~-~~~I~~~d~dg--~~~~~~~~~~~ 206 (316)
T 1ijq_A 130 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNG--GNRKTILEDEK 206 (316)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTS--CSCEEEEECTT
T ss_pred CCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECC-CCeEEEEecCC--CceEEEeecCC
Confidence 999999999875 899999999999988887779999999999999999999955 78999999999 778887764
Q ss_pred CCcCceeEEEeccccEEEEeccceeeeeeecc-ccceeee--eeecee-eeeeeecc
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY-DGYVRLV--TSLGHI-NLELYCNV 314 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~-dG~~~~~--t~~g~~-~i~Lf~d~ 314 (395)
.+.+|.||++| +++|||+|+..++|.+++. +|..... ..+..| .+.++...
T Consensus 207 ~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~~~p~~i~v~~~~ 261 (316)
T 1ijq_A 207 RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL 261 (316)
T ss_dssp TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGG
T ss_pred ccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCCcceEEEecCCCCceEEEEeccc
Confidence 47789999997 6899999999999999996 6765544 334455 77777543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=189.72 Aligned_cols=199 Identities=22% Similarity=0.373 Sum_probs=161.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|.++++++......+...+..|.+|++|+.++.|||+|...++|.+++++|. ....+...++..|++|++|+.+++
T Consensus 59 ~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~~~~~~P~~i~vd~~~g~ 135 (267)
T 1npe_A 59 SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---QRRVLFDTGLVNPRGIVTDPVRGN 135 (267)
T ss_dssp EEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEETTTTE
T ss_pred EEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC---CEEEEEECCCCCccEEEEeeCCCE
Confidence 67888888743333344566899999999999999999999999999999986 345555566789999999998999
Q ss_pred EEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 189 LYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 189 LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
|||+|.. .++|.+++++|...+++....+..|++|++|+.+++|||+|++ ..+|.+++++| ..++.++. ....|
T Consensus 136 lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~-~~~I~~~~~~g--~~~~~~~~-~~~~P 211 (267)
T 1npe_A 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG-THRAECLNPAQ--PGRRKVLE-GLQYP 211 (267)
T ss_dssp EEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTE--EEEEEEEE-CCCSE
T ss_pred EEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECC-CCEEEEEecCC--CceEEEec-CCCCc
Confidence 9999976 6899999999998887776678899999999999999999965 78999999998 55555554 56789
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccc-cceeeeeeec---ee-eeeeeeccCC
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYD-GYVRLVTSLG---HI-NLELYCNVFP 316 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~d-G~~~~~t~~g---~~-~i~Lf~d~ap 316 (395)
.||++| +++|||+|+..++|.+++.+ |........+ .+ .+++.++.+|
T Consensus 212 ~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~~ 264 (267)
T 1npe_A 212 FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQCP 264 (267)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC-
T ss_pred eEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccCC
Confidence 999998 78999999999999999987 4444332222 35 8887777665
|
| >2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-26 Score=196.05 Aligned_cols=102 Identities=50% Similarity=0.852 Sum_probs=95.8
Q ss_pred ccceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCC
Q psy13629 294 DGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNY 373 (395)
Q Consensus 294 dG~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~ 373 (395)
......+|..|.+.++||.+.+|.|++||++||+.+||+|+.|||++++|+|||||+.++|.|+++++|..|++|+.+.+
T Consensus 5 ~~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l 84 (160)
T 2fu0_A 5 PKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDHL 84 (160)
T ss_dssp CCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBTTB
T ss_pred CCEEEEEecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcCCCCCCCCcccCCCccccccCCc
Confidence 34455568899999999999999999999999999999999999999999999999999999999999999999987789
Q ss_pred CCCCCeEEEeecCCCCCCCCCC
Q psy13629 374 THTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 374 ~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+|.++|+|||||++||+|||||
T Consensus 85 ~h~~~G~lsmA~~gp~s~~SQF 106 (160)
T 2fu0_A 85 NHSKPFMVSMANCGPNTNGSQF 106 (160)
T ss_dssp CSSSSSEEEECCSSTTCBCSCE
T ss_pred ccCCceEEEEecCCCCCcccEE
Confidence 9998999999999999999998
|
| >2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-25 Score=194.91 Aligned_cols=98 Identities=63% Similarity=1.080 Sum_probs=93.6
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..++..|.+.++||.+.+|.|++||++||+.+||+|+.|||++++|+|||||++++|.|+++++|..|++|+.+.++|.+
T Consensus 15 ~l~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~ 94 (166)
T 2x7k_A 15 YLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTG 94 (166)
T ss_dssp EEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTSCCCS
T ss_pred EEEeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCccccccccccCCCC
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999878999999
Q ss_pred CeEEEeecCCCCCCCCCC
Q psy13629 378 RGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~~~~~~sqf 395 (395)
+|+|||||.+||+|||||
T Consensus 95 ~G~lsmAn~gp~s~gSQF 112 (166)
T 2x7k_A 95 AGILAMANAGPDTNGSQF 112 (166)
T ss_dssp TTEEEECBSSTTCBCSCE
T ss_pred CeEEEEeeCCCCCccceE
Confidence 999999999999999998
|
| >2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-25 Score=194.19 Aligned_cols=97 Identities=60% Similarity=1.112 Sum_probs=93.1
Q ss_pred eeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy13629 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGR 378 (395)
Q Consensus 299 ~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~ 378 (395)
.+|..|.+.++||.+.+|.|++||++||+.+||+|+.|||++++|+|||||+.++|+|+++++|..+++|..+.++|+.+
T Consensus 5 ~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~~ 84 (161)
T 2ok3_A 5 LHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVR 84 (161)
T ss_dssp EEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCCSCST
T ss_pred EEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCCCCCCCcccCCccccccCcCcCcCCC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred eEEEeecCCCCCCCCCC
Q psy13629 379 GVLSMANSGPNTNTSQL 395 (395)
Q Consensus 379 G~l~ma~~~~~~~~sqf 395 (395)
|+|||||++||+|||||
T Consensus 85 G~lsma~~gp~s~~SQF 101 (161)
T 2ok3_A 85 GVVSMANNGPNTNGSQF 101 (161)
T ss_dssp TEEEECCSSTTCBCSCE
T ss_pred eEEEEecCCCCCcceEE
Confidence 99999999999999998
|
| >1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-25 Score=197.33 Aligned_cols=100 Identities=73% Similarity=1.319 Sum_probs=95.0
Q ss_pred ceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCC
Q psy13629 296 YVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTH 375 (395)
Q Consensus 296 ~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~ 375 (395)
....+|..|.+.++||.+.+|.|++||++||+.|||+|+.|||++++|+|||||++++|.|+++++|..|++|+.+.++|
T Consensus 21 ~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~~g~Gg~si~g~~f~dE~~~~l~h 100 (197)
T 1zkc_A 21 YVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEFRPNLSH 100 (197)
T ss_dssp EEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSCBCCCCCTTCCS
T ss_pred EEEEEeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCCCCCCCCccCCCccccccCcCcCC
Confidence 34455889999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred CCCeEEEeecCCCCCCCCCC
Q psy13629 376 TGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 376 ~~~G~l~ma~~~~~~~~sqf 395 (395)
+.+|+|||||++||+|||||
T Consensus 101 ~~~G~lsMAn~gp~sngSQF 120 (197)
T 1zkc_A 101 TGRGILSMANSGPNSNRSQF 120 (197)
T ss_dssp CSTTEEEECCSSTTCBCSCE
T ss_pred CCceEEEEecCCCCCcccEE
Confidence 99999999999999999998
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=229.11 Aligned_cols=199 Identities=22% Similarity=0.320 Sum_probs=163.1
Q ss_pred EEEEEeeCCC----CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 108 LDIRIANLSR----PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 108 ~~I~~~~l~~----~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
+.|+++++++ ......+...+..|.||++|+.+++|||+|...++|.+++++|. ...+++...+..|+|||||
T Consensus 428 ~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~---~~~~l~~~~~~~P~giavD 504 (699)
T 1n7d_A 428 RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFREQGSKPRAIVVD 504 (699)
T ss_dssp TSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC---CEEEECCCSSCCCCCEECC
T ss_pred CeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC---ceEEEEeCCCCCcceEEEc
Confidence 3678888875 23333444567889999999999999999999999999999986 4556666678899999999
Q ss_pred cCCCeEEEEeCCC-CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec-
Q psy13629 184 WLTEKLYWTDSET-NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS- 261 (395)
Q Consensus 184 ~~~~~LYwtd~~~-~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~- 261 (395)
+.+++|||+|... ++|++++++|+.+++++...+..|+|||+||.+++|||+|++ ..+|++++++| ..+++++..
T Consensus 505 p~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~-~~~I~~~d~dG--~~~~~~~~~~ 581 (699)
T 1n7d_A 505 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNG--GNRKTILEDE 581 (699)
T ss_dssp SSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT-TTEEEEECSSS--SCCEEECCCS
T ss_pred cCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC-CCeEEEEccCC--CceEEEEecC
Confidence 9999999999775 899999999999888876779999999999999999999955 78999999999 788888763
Q ss_pred -CCcCceeEEEeccccEEEEeccceeeeeeecc-ccceeee--eeecee-eeeeeecc
Q psy13629 262 -TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY-DGYVRLV--TSLGHI-NLELYCNV 314 (395)
Q Consensus 262 -~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~-dG~~~~~--t~~g~~-~i~Lf~d~ 314 (395)
.+.+|.||++| +++|||+|+..++|.+++. +|..+.+ ..+.+| .|.++...
T Consensus 582 ~~~~~P~glavd--~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~~ 637 (699)
T 1n7d_A 582 KRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQL 637 (699)
T ss_dssp SSCSSCCCCEEE--TTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSSS
T ss_pred CcCCCceEeEEE--CCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeCcc
Confidence 46789999998 5799999999999999986 5665554 234445 77777543
|
| >2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-25 Score=196.43 Aligned_cols=98 Identities=58% Similarity=1.021 Sum_probs=93.7
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
...+..|.+.++||.+.+|.|++||++||+.|||+|+.|||++++|+|||||++++|.|+++++|..|++|+.+.++|+.
T Consensus 42 ~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~ 121 (196)
T 2b71_A 42 TIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTG 121 (196)
T ss_dssp EEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSCCCBTTBSCBCCCCCTTCCCCS
T ss_pred EEEeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCcccccccCCcCcCC
Confidence 34488999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred CeEEEeecCCCCCCCCCC
Q psy13629 378 RGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~~~~~~sqf 395 (395)
+|+|||||.+||+|||||
T Consensus 122 ~G~lsMAn~gpns~gSQF 139 (196)
T 2b71_A 122 AGILSMSNNGPNTNSSQF 139 (196)
T ss_dssp TTEEEECCSSTTCBSSCE
T ss_pred CeEEEEccCCCCCcccEE
Confidence 999999999999999998
|
| >2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-25 Score=193.92 Aligned_cols=98 Identities=58% Similarity=0.930 Sum_probs=93.5
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
...+..|.+.++||.+.+|.|++||++||+.+||+|+.|||++++|+|||||+.++|.|+++++|..|++|+.+.++|.+
T Consensus 25 ~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~ 104 (176)
T 2a2n_A 25 IIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDR 104 (176)
T ss_dssp EEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCCSCS
T ss_pred EEEecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCCCCCCCCCcccCCccccccccccccCC
Confidence 34488999999999999999999999999999999999999999999999999999999999999999999877899998
Q ss_pred CeEEEeecCCCCCCCCCC
Q psy13629 378 RGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~~~~~~sqf 395 (395)
+|+|||||.+||+|||||
T Consensus 105 ~G~lsmA~~gp~s~gSQF 122 (176)
T 2a2n_A 105 PYTLSMANAGSNTNGSQF 122 (176)
T ss_dssp SSEEEECCSSTTCBCSCE
T ss_pred ceEEEEEeCCCCCcccEE
Confidence 999999999999999998
|
| >2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-25 Score=194.87 Aligned_cols=99 Identities=49% Similarity=0.961 Sum_probs=93.8
Q ss_pred eeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 297 ~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
....+..|.+.++||.+.+|.|++||++||+.+||+|+.|||++++|+|||||++++|.|+++++|..|++|+.+.++|+
T Consensus 27 V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~ 106 (185)
T 2hq6_A 27 VLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFN 106 (185)
T ss_dssp EEEEETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBTTBCSC
T ss_pred EEEEeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCCCCCCCCcccCCccccccccCcccC
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999987789999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
.+|+|||||++||+|||||
T Consensus 107 ~~G~lsMA~~g~~s~gSQF 125 (185)
T 2hq6_A 107 RRGLVAMANAGSHDNGSQF 125 (185)
T ss_dssp SSSEEEECCSSTTCBCSCE
T ss_pred CCeEEEEccCCCCCccceE
Confidence 9999999999999999998
|
| >2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-25 Score=193.65 Aligned_cols=98 Identities=53% Similarity=1.044 Sum_probs=93.5
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
...+..|.+.++||.+.+|.|++||++||+.+||+|+.|||++++|+|||||++++|.|+++++|..|++|+.+.++|++
T Consensus 20 ~i~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~h~~ 99 (185)
T 2poe_A 20 RIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRYFDDEIYPELKYDR 99 (185)
T ss_dssp EEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTSSSSCCCBTTBSCBCCCCCTTSCCCS
T ss_pred EEEecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCcccccccCCCccCC
Confidence 33478999999999999999999999999999999999999999999999999999999999999999999878999999
Q ss_pred CeEEEeecCC----CCCCCCCC
Q psy13629 378 RGVLSMANSG----PNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~----~~~~~sqf 395 (395)
+|+|||||++ ||+|||||
T Consensus 100 ~G~lsmA~~g~~~~p~s~gSQF 121 (185)
T 2poe_A 100 RGILSMASKGASKKPNTNGSQF 121 (185)
T ss_dssp TTEEEECCSCC-CCCSCBCSCE
T ss_pred CeEEEEecCCCCCCCCCccceE
Confidence 9999999999 99999998
|
| >2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-24 Score=193.55 Aligned_cols=98 Identities=63% Similarity=1.080 Sum_probs=93.7
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..++..|.+.++||.+.+|.|++||++||+.+||+++.|||++++|+||+||+.++|.+++++++..|++|+.+.++|.+
T Consensus 15 ~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~~g~gg~si~g~~f~dE~~~~l~h~~ 94 (203)
T 2k7n_A 15 YLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTG 94 (203)
T ss_dssp EEEESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSSSSSCCCTTSCSCBCCCCCCSSCCCS
T ss_pred EEEeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCcccccccccccCCC
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999878999999
Q ss_pred CeEEEeecCCCCCCCCCC
Q psy13629 378 RGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~~~~~~sqf 395 (395)
+|+|||||.+||+|||||
T Consensus 95 ~G~lsMAn~gpnsngSQF 112 (203)
T 2k7n_A 95 AGILAMANAGPDTNGSQF 112 (203)
T ss_dssp SCEEEEEESSTTCEEEEE
T ss_pred CeEEEEeeCCCCCcccEE
Confidence 999999999999999998
|
| >3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-24 Score=194.22 Aligned_cols=101 Identities=48% Similarity=0.897 Sum_probs=88.5
Q ss_pred cceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEec-----CCCCCCCCCcccC-------C
Q psy13629 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGG-----DPTGTGTGGESIW-------G 362 (395)
Q Consensus 295 G~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g-----~~~~~g~~~~~~~-------~ 362 (395)
+....+|..|.+.++||.+.+|.|++||++||+.|||+|+.|||++++|+|||| |++++|.|+++++ |
T Consensus 7 ~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~~~~~g 86 (201)
T 3bo7_A 7 GYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGFPGG 86 (201)
T ss_dssp EEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCCSSTTC
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCCccccccccccCC
Confidence 344555889999999999999999999999999999999999999999999999 9999999999999 8
Q ss_pred CCCCCCCCCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 363 KPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 363 ~~~~~e~~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
..|++|+.+.++|+.+|+|||||++||+|||||
T Consensus 87 ~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQF 119 (201)
T 3bo7_A 87 APFEDEFDNRLVHQGIGVLSMANDGKHSNLSEF 119 (201)
T ss_dssp CCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCE
T ss_pred CcccCcccCCCCcCCCcEEEEeeCCCCCcccEE
Confidence 999999888999999999999999999999998
|
| >3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-24 Score=193.34 Aligned_cols=101 Identities=47% Similarity=0.863 Sum_probs=93.0
Q ss_pred cceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccC--CCCCCCCCCCC
Q psy13629 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIW--GKPFEDEFKPN 372 (395)
Q Consensus 295 G~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~--~~~~~~e~~~~ 372 (395)
+....+|..|.+.++||.+.+|.|++||++||+.+||+|+.|||++++|+|||||++++|+|+++++ |..|++|+.+.
T Consensus 22 ~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~G~Gg~si~~~g~~f~dE~~~~ 101 (232)
T 3bkp_A 22 GKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPR 101 (232)
T ss_dssp CEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSSSSCCCCCTTTTCCBCCCCCTT
T ss_pred CEEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCCCCCCCccccCCCccCCccccC
Confidence 3445558899999999999999999999999999999999999999999999999999999999999 89999998888
Q ss_pred CCCCCCeEEEeecCCC--------------CCCCCCC
Q psy13629 373 YTHTGRGVLSMANSGP--------------NTNTSQL 395 (395)
Q Consensus 373 ~~~~~~G~l~ma~~~~--------------~~~~sqf 395 (395)
++|+.+|+|||||.++ |+|||||
T Consensus 102 l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQF 138 (232)
T 3bkp_A 102 LKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQF 138 (232)
T ss_dssp CCCCSTTEEEECCCC----------------CBCSCE
T ss_pred cCcCCCeEEEEeccCCcccccccccccccCCCcCCEE
Confidence 9999999999999997 6999998
|
| >2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-24 Score=183.73 Aligned_cols=94 Identities=55% Similarity=0.914 Sum_probs=89.1
Q ss_pred eeeceeeeeeeeccCCccccceeeeec--cce-ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE--NGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~--~g~-y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+..|++.++||.+.+|.|++||++||+ .+| |+|+.|||++++|+||+||++ ++|+|+++++|..|++| .+.++|.
T Consensus 15 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~l~h~ 93 (165)
T 2z6w_A 15 KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHV 93 (165)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccCc-ccccccC
Confidence 578899999999999999999999999 999 999999999999999999985 78899999999999999 5789999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
++|+|||||.+||+|||||
T Consensus 94 ~~G~lsmA~~gp~s~~SQF 112 (165)
T 2z6w_A 94 GPGVLSMANAGPNTNGSQF 112 (165)
T ss_dssp STTEEEECCSSTTCBCSCE
T ss_pred CCCEEEEeeCCCCCcccEE
Confidence 8999999999999999998
|
| >1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-23 Score=186.86 Aligned_cols=95 Identities=49% Similarity=0.820 Sum_probs=88.2
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeee---------------ccceecceeEEEEecCcEEEecCCCCCCCCCcccCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHC---------------ENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWG 362 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~---------------~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~ 362 (395)
...+..|++.++||.+.+|.|++||++|| +.+||+|+.|||++++|+|||||+.++|+|+ +|
T Consensus 27 ~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~g~G~gg---~g 103 (191)
T 1w74_A 27 TLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGG---PG 103 (191)
T ss_dssp EEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSSSSCC---SS
T ss_pred EEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCCCCCCCC---CC
Confidence 34488999999999999999999999999 4689999999999999999999998888887 48
Q ss_pred CCCCCCCCCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 363 KPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 363 ~~~~~e~~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
..|++|+.+.++|+++|+|||||.+||+|||||
T Consensus 104 ~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQF 136 (191)
T 1w74_A 104 YKFADEFHPELQFDKPYLLAMANAGPGTNGSQF 136 (191)
T ss_dssp CCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCE
T ss_pred CccccccccCCCcCCCcEEEEeeCCCCCccceE
Confidence 889999888999999999999999999999998
|
| >2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-23 Score=183.94 Aligned_cols=94 Identities=53% Similarity=0.890 Sum_probs=88.2
Q ss_pred eeeceeeeeeeeccCCccccceeeeec--cce-ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE--NGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~--~g~-y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+..|.+.++||.+.+|.|++||++||+ .|| |+|+.|||++++|+|||||+. ++|+|+++++|..|++|. +.++|.
T Consensus 22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE~-~~l~h~ 100 (172)
T 2cmt_A 22 GDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDEN-FQLRHE 100 (172)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC-CCSCCC
T ss_pred eecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccCCCcccccc-cCcccC
Confidence 578899999999999999999999998 488 999999999999999999986 788999999999999994 588999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
++|+|||||.+||+|||||
T Consensus 101 ~~G~lsmA~~gp~t~gSQF 119 (172)
T 2cmt_A 101 GFGVLSMANSGPNTNGSQF 119 (172)
T ss_dssp STTEEEECCSSTTCBCSCE
T ss_pred CceEEEEeeCCCCCcccEE
Confidence 8999999999999999998
|
| >2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-23 Score=183.62 Aligned_cols=94 Identities=54% Similarity=0.885 Sum_probs=88.2
Q ss_pred eeeceeeeeeeeccCCccccceeeeec--cce-ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE--NGY-YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~--~g~-y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+..|++.++||.+.+|.|++||++||+ .+| |+|+.|||++++|+|||||++ ++|+|+++++|..|++| .+.++|+
T Consensus 23 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~l~h~ 101 (173)
T 2r99_A 23 KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE-NFILKHT 101 (173)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred ccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCCCcccCc-ccCcccC
Confidence 578899999999999999999999995 788 999999999999999999986 68899999999999999 4688999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
++|+|||||.+||+|||||
T Consensus 102 ~~G~lsmA~~gp~t~gSQF 120 (173)
T 2r99_A 102 GPGLLSMANSGPNTNGSQF 120 (173)
T ss_dssp SSSEEEECCSSTTCBCSCE
T ss_pred CCcEEEEccCCCCCcccEE
Confidence 9999999999999999998
|
| >1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-23 Score=184.93 Aligned_cols=94 Identities=50% Similarity=0.907 Sum_probs=89.0
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccce--------ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENGY--------YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKP 371 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~--------y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~ 371 (395)
+..|++.++||.+.+|.|++||++||+.+| |+|+.|||++++|+|||||+. ++|+|+++++|+.|++|. .
T Consensus 22 t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~f~dE~-~ 100 (177)
T 1mzw_A 22 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADEN-F 100 (177)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSCBCCCC-C
T ss_pred eeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCCccCCCcccCcc-c
Confidence 578899999999999999999999999998 999999999999999999985 789999999999999994 6
Q ss_pred CCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 372 NYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 372 ~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
.++|+++|+|||||.+||+|||||
T Consensus 101 ~l~h~~~G~lsmAn~gp~tngSQF 124 (177)
T 1mzw_A 101 KLRHSAPGLLSMANSGPSTNGCQF 124 (177)
T ss_dssp CSCCCSTTEEEECCSSTTCBCSCE
T ss_pred ccccCCCCEEEEccCCCCCcceEE
Confidence 889999999999999999999998
|
| >2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-23 Score=183.56 Aligned_cols=93 Identities=54% Similarity=0.888 Sum_probs=88.4
Q ss_pred eeeceeeeeeeeccCCccccceeeee--ccce-ecceeEEEEecCcEEEecC-CCCCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHC--ENGY-YNGTKFHRSIRNFMIQGGD-PTGTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~--~~g~-y~~~~~~r~~~~~~iq~g~-~~~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+..|++.++||.+.+|.|++||++|| +.+| |+|+.|||++++|+||||| +.++|.|+++++|+.|++| .+.++|.
T Consensus 23 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~l~h~ 101 (172)
T 2haq_A 23 EPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADE-NLNVKHF 101 (172)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCSSSSCBCCC-CCCSCCC
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccccCCcccCc-CCCcccC
Confidence 57889999999999999999999999 7899 9999999999999999999 5688999999999999999 6789999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
+|+|||||++||+|||||
T Consensus 102 -~G~lsmAn~gp~tngSQF 119 (172)
T 2haq_A 102 -VGALSMANAGPNTNGSQF 119 (172)
T ss_dssp -TTEEEECCSSTTCBCSCE
T ss_pred -ceEEEEccCCCCCcccEE
Confidence 999999999999999998
|
| >1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-23 Score=183.64 Aligned_cols=94 Identities=55% Similarity=0.911 Sum_probs=87.8
Q ss_pred eeeceeeeeeeeccCCccccceeeeecc--------c---eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCEN--------G---YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDE 368 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~--------g---~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e 368 (395)
+..|++.++||.+.+|.|++||++||+. + ||+|+.|||++++|+|||||++ ++|.|+++++|..|++|
T Consensus 18 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE 97 (177)
T 1a58_A 18 NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDE 97 (177)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSCCCCTTSSCBCCC
T ss_pred EeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccCc
Confidence 5788999999999999999999999984 4 8999999999999999999986 78999999999999999
Q ss_pred CCCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 369 FKPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 369 ~~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
. ..++|+++|+|||||++||+|||||
T Consensus 98 ~-~~~~h~~~G~lsmAn~gp~tngSQF 123 (177)
T 1a58_A 98 E-FVMKHDEPFVVSMANKGPNTNGSQF 123 (177)
T ss_dssp C-CCSCCCSSSEEEECCSSTTCBCSCE
T ss_pred c-cCcccCCCeEEEEeeCCCCCceeEE
Confidence 5 4788999999999999999999998
|
| >2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-23 Score=183.96 Aligned_cols=94 Identities=48% Similarity=0.780 Sum_probs=88.3
Q ss_pred eeeceeeeeeeeccCCccccceeeeec-----------cceecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE-----------NGYYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDE 368 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~-----------~g~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e 368 (395)
+..|++.++||.+.+|.|++||++||+ .+||+|+.|||++++|+||+||+. ++|+|+++++|..|++|
T Consensus 21 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE 100 (179)
T 2wfi_A 21 QPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDE 100 (179)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCCC
T ss_pred ccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCCCCcccCCccccc
Confidence 578899999999999999999999996 579999999999999999999986 78999999999999999
Q ss_pred CCCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 369 FKPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 369 ~~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
. +.++|+++|+|||||.+||+|||||
T Consensus 101 ~-~~~~h~~~G~lsMAn~gp~tngSQF 126 (179)
T 2wfi_A 101 S-FAVKHNKEFLLSMANRGKDTNGSQF 126 (179)
T ss_dssp C-CCSCCCSTTEEEECCSSTTCBCSCE
T ss_pred c-cCcCcCCCeEEEEEeCCCCCcceEE
Confidence 4 5789999999999999999999998
|
| >2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-23 Score=184.02 Aligned_cols=94 Identities=61% Similarity=0.950 Sum_probs=88.1
Q ss_pred eeeceeeeeeeeccCCccccceeeeecc--c--------eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCEN--G--------YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEF 369 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~--g--------~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~ 369 (395)
+..|++.++||.+.+|.|++||++||+. | ||+|+.|||++++|+|||||+. ++|+|+++++|+.|++|.
T Consensus 15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~siyg~~f~dE~ 94 (173)
T 2igv_A 15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDEN 94 (173)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCCCccCCCcccCcc
Confidence 4688899999999999999999999986 5 7999999999999999999986 789999999999999994
Q ss_pred CCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 370 KPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 370 ~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+.++|.++|+|||||++||+|||||
T Consensus 95 -~~l~h~~~G~lsmAn~gp~tngSQF 119 (173)
T 2igv_A 95 -FKEKHTGPGVLSMANAGPNTNGSQF 119 (173)
T ss_dssp -CCSCCCSTTEEEECCSSTTCBSSCE
T ss_pred -cccCCCCCeEEEEeeCCCCCcceEE
Confidence 6899999999999999999999998
|
| >2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-23 Score=184.68 Aligned_cols=94 Identities=48% Similarity=0.832 Sum_probs=88.2
Q ss_pred eeeceeeeeeeeccCCccccceeeeec-----------cceecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE-----------NGYYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDE 368 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~-----------~g~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e 368 (395)
+..|++.++||.+.+|.|++||++||+ .+||+|+.|||++++|+|||||+. ++|.|+++++|..|++|
T Consensus 31 t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G~gg~siyg~~f~dE 110 (192)
T 2he9_A 31 EPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDE 110 (192)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCCC
T ss_pred EecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCCCCCCcccCCcccCc
Confidence 578899999999999999999999995 579999999999999999999986 78999999999999999
Q ss_pred CCCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 369 FKPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 369 ~~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
. +.++|+++|+|||||.+||+|||||
T Consensus 111 ~-~~l~h~~~G~lsMAn~gp~tngSQF 136 (192)
T 2he9_A 111 N-FILKHDRAFLLSMANRGKHTNGSQF 136 (192)
T ss_dssp C-CCSCCCSTTEEEECCSSTTCBCSCE
T ss_pred c-ccCCCCCCeEEEEEeCCCCCcceEE
Confidence 4 6789999999999999999999998
|
| >1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-23 Score=183.28 Aligned_cols=94 Identities=52% Similarity=0.930 Sum_probs=88.2
Q ss_pred eeeceeeeeeeeccCCccccceeeeec-cce--------ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE-NGY--------YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFK 370 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~-~g~--------y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~ 370 (395)
+..|++.++||.+.+|.|++||++||+ .+| |+|+.|||++++|+||+||+. ++|+|+++++|+.|++| .
T Consensus 15 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~ 93 (170)
T 1qng_A 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDE-N 93 (170)
T ss_dssp SEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-C
T ss_pred EeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCCccccCCccccc-c
Confidence 467889999999999999999999998 589 999999999999999999985 78999999999999999 4
Q ss_pred CCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 371 PNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 371 ~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+.++|+++|+|||||.+||+|||||
T Consensus 94 ~~l~h~~~G~lsmAn~gp~tngSQF 118 (170)
T 1qng_A 94 FNMKHDQPGLLSMANAGPNTNSSQF 118 (170)
T ss_dssp CCSCCCSTTEEEECCSSTTCBCSCE
T ss_pred cccccCCCCEEEEeecCCCCcccEE
Confidence 6889999999999999999999998
|
| >3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-23 Score=185.23 Aligned_cols=94 Identities=47% Similarity=0.860 Sum_probs=88.8
Q ss_pred eeeceeeeeeeeccCCccccceeeeec--cce-ecceeEEEEecCcEEEecC-CCCCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE--NGY-YNGTKFHRSIRNFMIQGGD-PTGTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~--~g~-y~~~~~~r~~~~~~iq~g~-~~~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+..|++.++||.+.+|.|++||++||+ .|| |+|+.|||++++|+||||| +.++|.|+++++|+.|++| .+.++|+
T Consensus 27 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~l~h~ 105 (188)
T 3ich_A 27 EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-NFKLKHY 105 (188)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCccccCCccccc-ccCcccC
Confidence 578899999999999999999999995 789 9999999999999999999 6788999999999999999 6788999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
++|+|||||.+||+|||||
T Consensus 106 ~~G~lsmAn~gp~tngSQF 124 (188)
T 3ich_A 106 GPGWVSMANAGKDTNGSQF 124 (188)
T ss_dssp STTEEEECCSSTTCBCSCE
T ss_pred CCeEEEEccCCCCCcccEE
Confidence 9999999999999999998
|
| >3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-23 Score=180.40 Aligned_cols=94 Identities=48% Similarity=0.805 Sum_probs=89.6
Q ss_pred eeeceeeeeeeeccCCccccceeeeec--cce-ecceeEEEEecCcEEEecC-CCCCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE--NGY-YNGTKFHRSIRNFMIQGGD-PTGTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~--~g~-y~~~~~~r~~~~~~iq~g~-~~~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+..|++.++||.+.+|.|++||++||+ .+| |+|+.|||++++|+||+|| +.++|.|+++++|+++++| .+.++|.
T Consensus 14 t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~dE-~~~l~h~ 92 (164)
T 3pmp_A 14 KPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADE-NFQVKHT 92 (164)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCcccccc-ccccCcC
Confidence 678999999999999999999999999 889 9999999999999999999 6689999999999999999 6789999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
++|+|||||.+||+|||||
T Consensus 93 ~~G~lsma~~g~~t~~SQF 111 (164)
T 3pmp_A 93 KPGLLSMANAGANTNGSQF 111 (164)
T ss_dssp STTEEEECBSSTTCBCSCE
T ss_pred CCcEEEEeeCCCCCcccEE
Confidence 9999999999999999998
|
| >2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-23 Score=182.32 Aligned_cols=94 Identities=56% Similarity=0.889 Sum_probs=87.2
Q ss_pred eeeceeeeeeeeccCCccccceeeeec--cce--------ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE--NGY--------YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEF 369 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~--~g~--------y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~ 369 (395)
+..|++.++||.+.+|.|++||++||+ .|| |+|+.|||++++|+||+||++ ++|+|+++++|+.|++|.
T Consensus 31 t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~gg~si~g~~f~dE~ 110 (186)
T 2poy_A 31 TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDEN 110 (186)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCCTTC-CBCCCC
T ss_pred EecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCCCCccCCCcccCcc
Confidence 468889999999999999999999996 588 999999999999999999986 788999999999999994
Q ss_pred CCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 370 KPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 370 ~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+.++|.++|+|||||.+||+|||||
T Consensus 111 -~~l~h~~~G~lsMAn~gpntngSQF 135 (186)
T 2poy_A 111 -FVYTHDAPFLLSMANAGPNTNGSQF 135 (186)
T ss_dssp -CCSCCCSTTEEEECCSSTTCBCSCE
T ss_pred -cccccCCCcEEEEeeCCCCCcccEE
Confidence 6889999999999999999999998
|
| >1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-23 Score=186.39 Aligned_cols=94 Identities=50% Similarity=0.836 Sum_probs=88.5
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccc--------eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENG--------YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKP 371 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g--------~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~ 371 (395)
+..|++.++||.+.+|.|++||++||+.+ ||+|+.|||++++|+|||||++ ++|+|+++++|+.|++| .+
T Consensus 71 t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~siyg~~f~dE-~~ 149 (229)
T 1z81_A 71 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDE-NF 149 (229)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSCCCCC-CC
T ss_pred eecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCCCCCccCCCccccc-cc
Confidence 46889999999999999999999999987 7999999999999999999985 88999999999999999 46
Q ss_pred CCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 372 NYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 372 ~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
.++|+++|+|||||.+||+|||||
T Consensus 150 ~l~h~~~G~LsMAn~gpntngSQF 173 (229)
T 1z81_A 150 DIKHDKEGLLSMANSGPNTNGCQF 173 (229)
T ss_dssp CSCCCSTTEEEECCSSSSCCCSCE
T ss_pred ccccCCCcEEEeccCCCCCcccEE
Confidence 889999999999999999999998
|
| >2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-24 Score=185.78 Aligned_cols=97 Identities=51% Similarity=0.850 Sum_probs=62.7
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeec--cce-ecceeEEEEecCcEEEecC-CCCCCCCCcccCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCE--NGY-YNGTKFHRSIRNFMIQGGD-PTGTGTGGESIWGKPFEDEFKPNY 373 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~--~g~-y~~~~~~r~~~~~~iq~g~-~~~~g~~~~~~~~~~~~~e~~~~~ 373 (395)
...|+.|++.++||.+.+|.|++||++||+ .|+ |+++.|||++++|+||||| +.++|+|+++++|+.|++| .+.+
T Consensus 16 ~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~~ 94 (172)
T 2c3b_A 16 TAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADE-NFSR 94 (172)
T ss_dssp CSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC-----------------------CH
T ss_pred ceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCcccCCCcccCc-cccc
Confidence 344778999999999999999999999999 778 9999999999999999999 7788999999999999999 6678
Q ss_pred CCCCCeEEEeecCCCCCCCCCC
Q psy13629 374 THTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 374 ~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+|+++|+|||||.+||+|||||
T Consensus 95 ~h~~~G~lsmA~~gp~t~gSQF 116 (172)
T 2c3b_A 95 KHDKKGILSMANAGPNTNGSQF 116 (172)
T ss_dssp HHHHTCEEEEC---------CE
T ss_pred ccCCCeEEEEeeCCCCCcccEE
Confidence 8999999999999999999998
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=180.42 Aligned_cols=200 Identities=12% Similarity=0.126 Sum_probs=156.8
Q ss_pred eEEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEE---CCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 107 LLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTD---HGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 107 ~~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd---~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
.+.|+++++++ .+.+.+.... +.++.+.+++|||++ .....|+++++||+ ..+.+..... +++|
T Consensus 87 ~~~Iy~i~~dg-~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs---~~~~lt~~~~-----~~~~ 153 (302)
T 3s25_A 87 RNSLCRIKRNG-HGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE---EKKKIKNHYL-----FTCN 153 (302)
T ss_dssp SEEEEEEETTS-CCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSC---CCEEEESSCC-----CCSE
T ss_pred CCeEEEEeCCC-CcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCC---CeEEEeCCCc-----eEee
Confidence 46899999999 4556665543 346677899999999 56779999999997 4566655433 5679
Q ss_pred cCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCC
Q psy13629 184 WLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 184 ~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
|.+++|||++....+|++++++|..++.+.. .+..++++|..++|||++|+...+|+++++|| +++++|+++.+
T Consensus 154 ~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~----~~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG--~~~~~Lt~~~~ 227 (302)
T 3s25_A 154 TSDRYFYYNNPKNGQLYRYDTASQSEALFYD----CNCYKPVVLDDTNVYYMDVNRDNAIVHVNINN--PNPVVLTEANI 227 (302)
T ss_dssp EETTEEEEECTTTCCEEEEETTTTEEEEEEC----SCEEEEEEEETTEEEEEEGGGTTEEEEECSSS--CCCEECSCSCE
T ss_pred EECCEEEEEeCCCceEEEEECCCCCEEEEeC----CCccceeeecCCEEEEEEcCCCcEEEEEECCC--CCeEEEeCCCc
Confidence 9999999999888999999999999887763 24456688999999999998678999999999 78888877654
Q ss_pred cCceeEEEeccccEEEEe-ccceeeeeeeccccceeeeeeecee-eeeeeeccCCccccceeeeeccceecceeEEEEec
Q psy13629 264 FWPNGIAIDFNNRLLYWI-DGRLTFIEVMDYDGYVRLVTSLGHI-NLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIR 341 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwa-D~~~~~I~~~~~dG~~~~~t~~g~~-~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~ 341 (395)
| .+|+.+++|||+ |...+.|+++++||+.++....+.. .+.+| .+..||+.+.
T Consensus 228 --~---~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~~~~~i~i~--------------------~d~Iy~td~~ 282 (302)
T 3s25_A 228 --E---HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKGEFCNINVT--------------------SQYVYFTDFV 282 (302)
T ss_dssp --E---EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEESCEEEEEEC--------------------SSEEEEEETT
T ss_pred --c---eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCCccceEEEe--------------------CCEEEEEECC
Confidence 3 277779999997 6667999999999998876333333 55555 7788999888
Q ss_pred CcEEEecCC
Q psy13629 342 NFMIQGGDP 350 (395)
Q Consensus 342 ~~~iq~g~~ 350 (395)
...|..-..
T Consensus 283 ~~~i~~~~~ 291 (302)
T 3s25_A 283 SNKEYCTST 291 (302)
T ss_dssp TCCEEEEES
T ss_pred CCeEEEEEC
Confidence 766665443
|
| >4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-22 Score=179.32 Aligned_cols=94 Identities=48% Similarity=0.830 Sum_probs=88.1
Q ss_pred eeeceeeeeeeeccCCccccceeeeecc--c-eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCEN--G-YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~--g-~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+..|++.++||.+.+|.|++||++||+. | +|+|+.|||++++|+|||||++ ++|.|+.+++|+.|++| ...++|+
T Consensus 24 ~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~de-~~~~~h~ 102 (185)
T 4fru_A 24 EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDE-NFKLKHY 102 (185)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCccccCCccCcc-ccccCcC
Confidence 5688999999999999999999999975 6 7999999999999999999986 78999999999999999 5688999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
++|+|||||.+||+|||||
T Consensus 103 ~~G~lsma~~gp~t~~SQF 121 (185)
T 4fru_A 103 GPGWVSMANAGKDTNGSQF 121 (185)
T ss_dssp STTEEEECCSSTTCBCSCE
T ss_pred CCeEEEEeeCCCCCcceEE
Confidence 9999999999999999998
|
| >1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-22 Score=176.81 Aligned_cols=94 Identities=36% Similarity=0.657 Sum_probs=84.5
Q ss_pred eeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy13629 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGR 378 (395)
Q Consensus 299 ~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~ 378 (395)
.+|..|.+.++||.+.+|.|++||++||+.|||+|+.|||++++|+|||||++. +. +.++++..|++|+.+.++|. +
T Consensus 4 l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~-~~-g~~~~g~~~~dE~~~~l~~~-~ 80 (164)
T 1lop_A 4 FHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEP-GM-KQKATKEPIKNEANNGLKNT-R 80 (164)
T ss_dssp EEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEET-TT-EECCCCCCBCCCCCSSCCCC-T
T ss_pred EEeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCccc-CC-CcCCCCCccccccccccccC-c
Confidence 457899999999999999999999999999999999999999999999999862 22 45678899999987788885 9
Q ss_pred eEEEeecC-CCCCCCCCC
Q psy13629 379 GVLSMANS-GPNTNTSQL 395 (395)
Q Consensus 379 G~l~ma~~-~~~~~~sqf 395 (395)
|+|||||. +||+|||||
T Consensus 81 G~lsmA~~~~p~s~gSQF 98 (164)
T 1lop_A 81 GTLAMARTQAPHSATAQF 98 (164)
T ss_dssp TEEEECCCSSTTCBCSCE
T ss_pred cEEEEeecCCCCCccceE
Confidence 99999975 799999998
|
| >3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-22 Score=177.60 Aligned_cols=94 Identities=51% Similarity=0.862 Sum_probs=88.5
Q ss_pred eeeceeeeeeeeccCCccccceeeeec--cce-ecceeEEEEecCcEEEecC-CCCCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE--NGY-YNGTKFHRSIRNFMIQGGD-PTGTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~--~g~-y~~~~~~r~~~~~~iq~g~-~~~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+..|++.++||.+.+|.|++||++||+ .+| |+|+.|||++++|+||||| +.+.|.|+.+++|+.|++| .+.++|+
T Consensus 39 t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE-~~~l~h~ 117 (193)
T 3k2c_A 39 ESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDE-NFELKHT 117 (193)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCCC-CCCSCCC
T ss_pred EEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCCCccccc-ccccccC
Confidence 578899999999999999999999999 777 9999999999999999999 5578999999999999999 6788999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
++|+|||||.+||+|||||
T Consensus 118 ~~G~lsmAn~gp~t~gSQF 136 (193)
T 3k2c_A 118 KEGILSMANCGAHTNGSQF 136 (193)
T ss_dssp STTEEEECCSSTTCBCSCE
T ss_pred CCcEEEEEeCCCCCCccEE
Confidence 9999999999999999998
|
| >1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-22 Score=174.29 Aligned_cols=94 Identities=38% Similarity=0.573 Sum_probs=82.4
Q ss_pred eeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy13629 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGR 378 (395)
Q Consensus 299 ~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~ 378 (395)
.+|..|.+.++||.+.+|.|++||++||+.+||+|+.|||++++|+|||||+++.+.+ ..++.+|++|..+.++|. +
T Consensus 9 ~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~~--~~~g~~~~dE~~~~l~~~-~ 85 (166)
T 1v9t_A 9 LTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ--KKPNPPIKNEADNGLRNT-R 85 (166)
T ss_dssp EEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCCB--CCCCCCBCCCGGGSCCCC-T
T ss_pred EEeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcCCCC--CCCCCcccccccccccCC-c
Confidence 3478999999999999999999999999999999999999999999999998754332 335788999976677665 9
Q ss_pred eEEEeecC-CCCCCCCCC
Q psy13629 379 GVLSMANS-GPNTNTSQL 395 (395)
Q Consensus 379 G~l~ma~~-~~~~~~sqf 395 (395)
|+|||||+ +||+|||||
T Consensus 86 G~lsmA~~~~p~t~gSQF 103 (166)
T 1v9t_A 86 GTIAMARTADKDSATSQF 103 (166)
T ss_dssp TEEEECCCSSTTCBCSCE
T ss_pred eEEEEeecCCCCCccceE
Confidence 99999997 599999998
|
| >3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-22 Score=175.97 Aligned_cols=94 Identities=52% Similarity=0.870 Sum_probs=86.9
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccc--e-ecceeEEEEecCcEEEecCC-CCCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENG--Y-YNGTKFHRSIRNFMIQGGDP-TGTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g--~-y~~~~~~r~~~~~~iq~g~~-~~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+..|++.++||.+.+|.|++||++||+.+ | |+|+.|||++++|+|||||+ .++|.|+.++++..+++| .+.++|.
T Consensus 34 ~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~de-~~~l~h~ 112 (184)
T 3rdd_A 34 EPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDE-NFILKHT 112 (184)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcccCCCcccCc-ccccccC
Confidence 46888999999999999999999999754 4 99999999999999999995 578999999999999999 4688999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
++|+|||||.+||+|||||
T Consensus 113 ~~G~lsmA~~gp~s~gSQF 131 (184)
T 3rdd_A 113 GPGILSMANAGPNTNGSQF 131 (184)
T ss_dssp STTEEEECCSSTTCBSSCE
T ss_pred CCcEEEEEeCCCCCcccEE
Confidence 9999999999999999998
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-21 Score=192.92 Aligned_cols=94 Identities=54% Similarity=0.936 Sum_probs=88.6
Q ss_pred eeeceeeeeeeeccCCccccceeeeecc--------c---eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCEN--------G---YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDE 368 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~--------g---~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e 368 (395)
+..|++.++||.+.+|.|++||++||+. | ||+|+.|||++++|+|||||++ ++|+|+++++|..|++|
T Consensus 27 ~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g~~~~~~~~~~~e 106 (370)
T 1ihg_A 27 ERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDE 106 (370)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC
T ss_pred EecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCCCCCCCCCCcCCC
Confidence 3578899999999999999999999997 6 7999999999999999999998 89999999999999999
Q ss_pred CCCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 369 FKPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 369 ~~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
.+.++|+.+|+|||||.+||||||||
T Consensus 107 -~~~~~~~~~g~l~ma~~~~~~~~sqf 132 (370)
T 1ihg_A 107 -NFHYKHDKEGLLSMANAGSNTNGSQF 132 (370)
T ss_dssp -CCCBCCCSTTEEEECCSSTTCBCSCE
T ss_pred -cCCcCCCCCeEEEEeeCCCCCCCceE
Confidence 45789999999999999999999998
|
| >3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-22 Score=174.08 Aligned_cols=95 Identities=36% Similarity=0.503 Sum_probs=83.6
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..+|+.|.+.++||.+.+|.|++||++||+.+||+++.|||++++|+|||||++..+ +...++..+++|..+.++| .
T Consensus 7 ~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~--~~~~~~~~~~~E~~~~l~~-~ 83 (167)
T 3s6m_A 7 ELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGL--KQKPTDAPIANEANNGLKN-D 83 (167)
T ss_dssp EEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEETTT--EECCCCCCBCCCGGGCCCC-C
T ss_pred EEEeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccCCC--CCCCCCCccCCcccccccC-C
Confidence 345889999999999999999999999999999999999999999999999986432 2345578899997777877 5
Q ss_pred CeEEEeec-CCCCCCCCCC
Q psy13629 378 RGVLSMAN-SGPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~-~~~~~~~sqf 395 (395)
+|+||||| .+||+|||||
T Consensus 84 ~G~lsmA~~~~p~t~gSQF 102 (167)
T 3s6m_A 84 TYTIAMARTNDPHSATAQF 102 (167)
T ss_dssp TTEEEECCCSSTTCBCSCE
T ss_pred ccEEEEecCCCCCCccceE
Confidence 99999999 5799999998
|
| >2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-21 Score=176.79 Aligned_cols=92 Identities=28% Similarity=0.573 Sum_probs=80.5
Q ss_pred eeeceeeeeeeeccCCccccceeeeecc-----------------c--e-ecceeEEEEecCcEEEecC-CCCCCCCCcc
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCEN-----------------G--Y-YNGTKFHRSIRNFMIQGGD-PTGTGTGGES 359 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~-----------------g--~-y~~~~~~r~~~~~~iq~g~-~~~~g~~~~~ 359 (395)
+..|++.++||.+.+|.|++||++||+. | | |+|+.|||++++|+||||| +.++|+|+++
T Consensus 26 t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQgGd~~~g~G~Gg~s 105 (234)
T 2ose_A 26 EIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGT 105 (234)
T ss_dssp EEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEECCCC----CCCCC
T ss_pred cccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEcCCccCCCCCCCcc
Confidence 5788999999999999999999999983 4 7 9999999999999999999 5788999999
Q ss_pred cCCCC-----CCCCCCCCCCCCCCeEEEeec----CCCCCCCCCC
Q psy13629 360 IWGKP-----FEDEFKPNYTHTGRGVLSMAN----SGPNTNTSQL 395 (395)
Q Consensus 360 ~~~~~-----~~~e~~~~~~~~~~G~l~ma~----~~~~~~~sqf 395 (395)
++|.. |+ | +.++|.++|+||||| .+||+|||||
T Consensus 106 iyg~~~~p~~f~-~--~~l~h~~~G~lsMAn~~~~~gpntngSQF 147 (234)
T 2ose_A 106 VYCDEPIPPVFG-D--YFYPHESKGLLSLVPYTDESGNRYYDSTF 147 (234)
T ss_dssp TTTTCCBCCCCC-S--CCCCSCSTTEEEECCEECTTSCEEBCSCE
T ss_pred ccCCccCccccc-C--cCccCCCCCEEEEecccccCCCCCccceE
Confidence 99987 66 4 478998999999999 8999999998
|
| >3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-21 Score=182.72 Aligned_cols=93 Identities=26% Similarity=0.434 Sum_probs=83.0
Q ss_pred eeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCC---------------------Cccc
Q psy13629 302 SLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG---------------------GESI 360 (395)
Q Consensus 302 ~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~---------------------~~~~ 360 (395)
..|.+.++||.+.+|.|++||++||+.+||+|+.|||+ ++|+|||||++++|.| +.++
T Consensus 186 ~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~~~~g~~~~iP~E~~~~G~g~pi 264 (369)
T 3rfy_A 186 EDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPF 264 (369)
T ss_dssp SEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCSCCCCCCCSSSSSSCSSSSCCSC
T ss_pred cceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccCcccCcCcccCccccccCCCCCc
Confidence 47899999999999999999999999999999999999 9999999999887766 3566
Q ss_pred CCCCCCCCC----CCCCCCCCCeEEEeecC--CCCCCCCCC
Q psy13629 361 WGKPFEDEF----KPNYTHTGRGVLSMANS--GPNTNTSQL 395 (395)
Q Consensus 361 ~~~~~~~e~----~~~~~~~~~G~l~ma~~--~~~~~~sqf 395 (395)
++..|++|. .+.++|+.+|+|||||+ +||+|||||
T Consensus 265 yg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQF 305 (369)
T 3rfy_A 265 YGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQV 305 (369)
T ss_dssp CCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCC
T ss_pred CCCccccccccccccccccCCCceEEEeecCCCCCCccceE
Confidence 777777763 35788889999999998 799999999
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-16 Score=153.97 Aligned_cols=188 Identities=12% Similarity=0.111 Sum_probs=145.0
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCC----eEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE----MISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~----~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
+.|+++++++ .....+......|.+|++|+.++.|||+|...+ .+..+..+|.-. ....+. .+..|.++|+|
T Consensus 159 ~~I~~id~~~-~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~-~~~~l~--~~~~p~giavd 234 (430)
T 3tc9_A 159 HPTRLIDFEK-EYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFK-VITELT--KGQNCNGAETH 234 (430)
T ss_dssp EEEEEEETTT-TEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSC-SEEEEE--ECSSCCCEEEC
T ss_pred CcEEEEECCC-CEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCcee-eeeeec--cCCCceEEEEe
Confidence 5788899877 556666778889999999999999999997543 466677776521 112222 47889999999
Q ss_pred cCCCeEEEEeCCCCeEEEEECCCCceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC---cceEEEE
Q psy13629 184 WLTEKLYWTDSETNKLEVSSLDGKKRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP---RHRKVIV 259 (395)
Q Consensus 184 ~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~---~~~~~lv 259 (395)
+.+++|||+|...++|.++++++.....+.. .....|++|+++|..++|||+|+. ..+|.+++.+|.. ....++.
T Consensus 235 p~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~-~~~I~~~~~d~~~~~~~~~~~~a 313 (430)
T 3tc9_A 235 PINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN-QHYILRSDYDWKTKRLTTPYIVC 313 (430)
T ss_dssp TTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTEECCCEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC-CCEEEEEeCCcccccccceEEEe
Confidence 9899999999999999999999877644443 345689999999998889999955 7899999999721 0123344
Q ss_pred ec--------------CCcCce-eEEEec-------cccEEEEeccceeeeeeeccccceeee
Q psy13629 260 DS--------------TIFWPN-GIAIDF-------NNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 260 ~~--------------~~~~P~-glalD~-------~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
.. .+..|. |++++. .+++|||+|...++|.+++.+|.....
T Consensus 314 g~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v~~~ 376 (430)
T 3tc9_A 314 GQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTF 376 (430)
T ss_dssp ECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEEEEE
T ss_pred ccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCCcEEEE
Confidence 32 256799 899962 457999999999999999998855444
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-16 Score=154.39 Aligned_cols=186 Identities=12% Similarity=0.086 Sum_probs=139.9
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC----CeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT----EMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~----~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
+.|+++++.. .....+......|.+|++|+.++ ||++|... ..+.++..++.. ..... ...+..|.|+|+|
T Consensus 162 ~~I~~id~~~-g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~--~~~~~-~~~~~~P~giavd 236 (433)
T 4hw6_A 162 DAFRHVDFVN-QYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF--TERLS-LCNARGAKTCAVH 236 (433)
T ss_dssp SCEEEEETTT-TEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT--CCEEE-EEECSSBCCCEEC
T ss_pred CCEEEEECCC-CEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe--ecccc-ccccCCCCEEEEe
Confidence 3678888865 56666777888999999999988 99999743 235555555432 11122 2257899999999
Q ss_pred cCCCeEEEEeCCCCeEEEEECC-CCceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCC---CcceEEE
Q psy13629 184 WLTEKLYWTDSETNKLEVSSLD-GKKRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGD---PRHRKVI 258 (395)
Q Consensus 184 ~~~~~LYwtd~~~~~I~v~~ld-g~~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~---~~~~~~l 258 (395)
+..++|||+|..+++|.+++++ |.....+.. .....+.+|+++|..++|||+|++ ..+|.++++++. .....++
T Consensus 237 ~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~-~~~I~~~~~d~~~~~~~~~~~~ 315 (433)
T 4hw6_A 237 PQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG-KHCIYRVDYNRETGKLAVPYIV 315 (433)
T ss_dssp TTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT-TTEEEEEEBCTTTCCBCCCEEE
T ss_pred CCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC-CCEEEEEeCCCCCcccCcEEEE
Confidence 9899999999999999999998 554244442 334567789999998899999955 789999998852 1122344
Q ss_pred Eec--------------CCcCceeEEE---------eccccEEEEeccceeeeeeeccccceeee
Q psy13629 259 VDS--------------TIFWPNGIAI---------DFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 259 v~~--------------~~~~P~glal---------D~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
... .+.+|.||++ | .+++|||+|...++|.+++.+|.....
T Consensus 316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~~n~~I~~~~~~G~v~t~ 379 (433)
T 4hw6_A 316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDRDSHTVRVLTPEGRVTTY 379 (433)
T ss_dssp EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEETTTTEEEEECTTSEEEEE
T ss_pred EecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEECCCCEEEEECCCCCEEEE
Confidence 443 3568999999 6 778999999999999999998855444
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-16 Score=150.61 Aligned_cols=169 Identities=10% Similarity=0.061 Sum_probs=131.8
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
..|.++++++. ..+.+..... +++++.++.|||++.....|++++++|+ .++.+.. .+...+++|.++
T Consensus 129 ~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~---~~~~l~~----~~~~~~~~P~g~ 196 (302)
T 3s25_A 129 TSLYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ---SEALFYD----CNCYKPVVLDDT 196 (302)
T ss_dssp EEEEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT---EEEEEEC----SCEEEEEEEETT
T ss_pred ceEEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC---CEEEEeC----CCccceeeecCC
Confidence 36889999984 4444444322 4568889999999987889999999997 4454533 233456777899
Q ss_pred eEEEEeCCC-CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 188 KLYWTDSET-NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 188 ~LYwtd~~~-~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
.|||++... .+|++++++|+.+++|....+ | .++|..++|||++.+....|+++++|| +.++.+....
T Consensus 197 ~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~---~~~~~g~~Iy~~~~~~~~~i~~~~~DG--~~r~~l~~~~---- 265 (302)
T 3s25_A 197 NVYYMDVNRDNAIVHVNINNPNPVVLTEANI--E---HYNVYGSLIFYQRGGDNPALCVVKNDG--TGFKELAKGE---- 265 (302)
T ss_dssp EEEEEEGGGTTEEEEECSSSCCCEECSCSCE--E---EEEEETTEEEEEECSSSCEEEEEETTS--CCCEEEEESC----
T ss_pred EEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--c---eEEECCCEEEEEECCCCcEEEEEECCC--CccEEeeCCc----
Confidence 999999653 699999999999888864433 3 388889999998656568999999999 7887777653
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
..+++..+++|||+|+..+.|.++.+||+.+++
T Consensus 266 -~~~i~i~~d~Iy~td~~~~~i~~~~~dGs~~~~ 298 (302)
T 3s25_A 266 -FCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIK 298 (302)
T ss_dssp -EEEEEECSSEEEEEETTTCCEEEEESSSCCSCE
T ss_pred -cceEEEeCCEEEEEECCCCeEEEEECCCCCceE
Confidence 235666799999999999999999999998765
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-16 Score=154.53 Aligned_cols=160 Identities=10% Similarity=0.145 Sum_probs=130.7
Q ss_pred CCCCeEEEEEEc-CCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCC----eEEE
Q psy13629 127 DLEEGAAIDYYY-KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETN----KLEV 201 (395)
Q Consensus 127 ~~~~~~gl~~d~-~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~----~I~v 201 (395)
.+..|.+|++|+ .++.||++|.. ++|+++++++. . ...+......|.+|++|+.++.|||+|...+ .+.+
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~---~-v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKE---Y-VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTT---E-EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCC---E-EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 477899999998 58899999977 89999999985 2 3334457788999999998888999997433 5777
Q ss_pred EECCCCce--EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe-cCCcCceeEEEeccccEE
Q psy13629 202 SSLDGKKR--KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD-STIFWPNGIAIDFNNRLL 278 (395)
Q Consensus 202 ~~ldg~~~--~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~-~~~~~P~glalD~~~~rL 278 (395)
.+.+|... ..+ ..+..|+++++||.+|+|||+|++ ..+|.++++++ .....+.. ....+|++|++|+.+++|
T Consensus 210 ~~~~g~~~~~~~l--~~~~~p~giavdp~~g~lyv~d~~-~~~V~~~~~~~--~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 210 LTRESGFKVITEL--TKGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTT--QETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp EEGGGTSCSEEEE--EECSSCCCEEECTTTCCEEEEETT-TTEEEEEETTT--TEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred EeCCCceeeeeee--ccCCCceEEEEeCCCCEEEEEECC-CCEEEEEECCC--CcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 88888665 333 358899999999999999999977 67999999998 44423333 344689999999888889
Q ss_pred EEeccceeeeeeeccccc
Q psy13629 279 YWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 279 YwaD~~~~~I~~~~~dG~ 296 (395)
||+|...++|.+++++|.
T Consensus 285 yv~d~~~~~I~~~~~d~~ 302 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYDWK 302 (430)
T ss_dssp EEEETTTTEEEEEEEETT
T ss_pred EEEECCCCEEEEEeCCcc
Confidence 999999999999999975
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-14 Score=143.07 Aligned_cols=180 Identities=18% Similarity=0.195 Sum_probs=138.4
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCC-eEEEEEccCCCCCceEEEE----eCCCCCcceEEE
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE-MISCCTFDGNNVGSKHNVI----TNGLITPDGLAI 182 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~-~I~~~~~dg~~~~~~~~i~----~~~~~~p~glAV 182 (395)
+.|+++++++ .....+......+. +++++.++.|||++...+ .|++++.++.. ....+ ......|.++|+
T Consensus 152 ~~I~~id~~~-g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~---~~~~~g~~~~~~~~~p~~iav 226 (409)
T 3hrp_A 152 PRVRLISVDD-NKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW---APTRIGQLGSTFSGKIGAVAL 226 (409)
T ss_dssp TEEEEEETTT-TEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT---CEEEEEECCTTSCSCCCBCEE
T ss_pred CcEEEEECCC-CEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc---eeEEeeeccchhcCCcEEEEE
Confidence 3788899876 45555555566677 999999999999997655 99999998752 22222 225678999999
Q ss_pred ecCCCeEEEEeCCCCeEEEEECCCCceEEEE----ec-CCCCce-eEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceE
Q psy13629 183 DWLTEKLYWTDSETNKLEVSSLDGKKRKVLY----WE-DIDQPR-AIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRK 256 (395)
Q Consensus 183 D~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~----~~-~~~~P~-~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~ 256 (395)
|+.++.||+++. .++|.++++++.....+. .. ....|. +|+++|..+.|||+|.. ..+|.+++.+| . ..
T Consensus 227 ~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-~~~I~~~~~~g--~-~~ 301 (409)
T 3hrp_A 227 DETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-LSSVYKITPDG--E-CE 301 (409)
T ss_dssp CTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-TTEEEEECTTC--C-EE
T ss_pred eCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-CCEEEEEecCC--C-EE
Confidence 998999999886 789999999987655441 11 123467 99999999999999954 78999999998 3 44
Q ss_pred EEEecC--------------CcCceeEEEeccccEEEEecc-ceeeeeeec-ccccee
Q psy13629 257 VIVDST--------------IFWPNGIAIDFNNRLLYWIDG-RLTFIEVMD-YDGYVR 298 (395)
Q Consensus 257 ~lv~~~--------------~~~P~glalD~~~~rLYwaD~-~~~~I~~~~-~dG~~~ 298 (395)
+++... +.+|+||++|.. ++||++|. ..++|.+++ .+|...
T Consensus 302 ~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 302 WFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEEEETTTTEEE
T ss_pred EEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEEEECCCCEEE
Confidence 555443 678999999965 56999999 999999999 666543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=142.60 Aligned_cols=174 Identities=12% Similarity=0.117 Sum_probs=129.7
Q ss_pred EEEEeeCCCCCccEEe----cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE----eCC--CCCcc
Q psy13629 109 DIRIANLSRPLKPVTI----IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI----TNG--LITPD 178 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~----~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~----~~~--~~~p~ 178 (395)
.|.+++..+......+ ......+.++++++.++.||+++. +++|++++.++. . ..++ ..+ ...|.
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~---~-~~~~~~~~~~g~~~~~P~ 269 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQ---E-VTLIKQLELSGSLGTNPG 269 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT-TCEEEEEETTTC---C-EEEEEECCCCSCCCCSSC
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCC---C-EEEEecccccCCCCCCcc
Confidence 5666665542222222 225678999999998999999885 789999999875 2 2232 111 12356
Q ss_pred -eEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecC--------------CCCceeEEEeCCCCeEEEEeeCCCCeE
Q psy13629 179 -GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED--------------IDQPRAIALVPQDSIMFWTDWGEVPKI 243 (395)
Q Consensus 179 -glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~--------------~~~P~~iavdp~~g~LYwtd~~~~~~I 243 (395)
+|++|+.+++||++|..+++|.+++++|.. ..+.... +..|++|++|+. |.||++|+....+|
T Consensus 270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I 347 (409)
T 3hrp_A 270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCL 347 (409)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEE
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEE
Confidence 999999889999999999999999999983 3443332 678999999986 56999996148899
Q ss_pred EEEe-cCCCCcceEEEEec--------------CCcCceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 244 ERGA-MNGDPRHRKVIVDS--------------TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 244 ~~~~-~dG~~~~~~~lv~~--------------~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
.+++ .+| ...++... .+.+|+||++|.. ++||++|+..++|.++.+
T Consensus 348 ~~~~~~~G---~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 348 RKLDILDG---YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEETTTT---EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred EEEECCCC---EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 9999 555 34444443 2578999999966 899999999999988765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=139.94 Aligned_cols=181 Identities=13% Similarity=0.064 Sum_probs=133.5
Q ss_pred EEEEeeCCCCCccEEe--cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE--------eCCCCCcc
Q psy13629 109 DIRIANLSRPLKPVTI--IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI--------TNGLITPD 178 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~--~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~--------~~~~~~p~ 178 (395)
.|.+++.+. .+.... ...+..|.++++|+.++ ||++|..+++|.+++.+|... ....+- ...+..|.
T Consensus 70 ~i~~~d~~~-g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~ 146 (329)
T 3fvz_A 70 TILVIDPNN-AEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPT 146 (329)
T ss_dssp CEEEECTTT-CCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEE
T ss_pred cEEEEECCC-CeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCc
Confidence 577777754 222222 23467899999998666 999999999999999988520 112221 23456899
Q ss_pred eEEEecCCCeEEEEeC-CCCeEEEEECCCCceEEEEec---------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEec
Q psy13629 179 GLAIDWLTEKLYWTDS-ETNKLEVSSLDGKKRKVLYWE---------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248 (395)
Q Consensus 179 glAVD~~~~~LYwtd~-~~~~I~v~~ldg~~~~~l~~~---------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~ 248 (395)
+||+|+.+++||++|. .+++|.+++.+|.....+... .+..|++|++||.++.||++|++ ..+|.+.+.
T Consensus 147 ~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-~~~I~~~~~ 225 (329)
T 3fvz_A 147 DVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-NGRIQCFKT 225 (329)
T ss_dssp EEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-TTEEEEEET
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-CCEEEEEEC
Confidence 9999988999999996 799999999999877665422 24569999999988999999965 678888888
Q ss_pred C-CCCcceEEE--------------------------------------E--------------ecCCcCceeEEEeccc
Q psy13629 249 N-GDPRHRKVI--------------------------------------V--------------DSTIFWPNGIAIDFNN 275 (395)
Q Consensus 249 d-G~~~~~~~l--------------------------------------v--------------~~~~~~P~glalD~~~ 275 (395)
+ |. -...+ + ...+..|.+|++|.++
T Consensus 226 ~~G~--~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG 303 (329)
T 3fvz_A 226 DTKE--FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG 303 (329)
T ss_dssp TTCC--EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS
T ss_pred CCCc--EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC
Confidence 7 42 11111 0 1235568899998655
Q ss_pred cEEEEeccceeeeeeeccccc
Q psy13629 276 RLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 276 ~rLYwaD~~~~~I~~~~~dG~ 296 (395)
+||++|...++|.+++++|.
T Consensus 304 -~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 304 -TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp -EEEEEESSSCCEEEEEEEEC
T ss_pred -CEEEEECCCCEEEEEeCCcc
Confidence 89999988888888888764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.6e-15 Score=140.55 Aligned_cols=168 Identities=16% Similarity=0.094 Sum_probs=128.7
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCC------------------------CeEEEEEccCCCCCceEEEEeCCCCCcceEEE
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGT------------------------EMISCCTFDGNNVGSKHNVITNGLITPDGLAI 182 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~------------------------~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAV 182 (395)
.+..+.|+++|+. ++||+++..+ ++|.+++.+... .....-...+..|.|||+
T Consensus 22 ~l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~p~gia~ 98 (329)
T 3fvz_A 22 LPGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE--ILQSSGKNLFYLPHGLSI 98 (329)
T ss_dssp CCSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC--EEEEECTTTCSSEEEEEE
T ss_pred ecCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe--EEeccCCCccCCceEEEE
Confidence 4688999999987 4689999776 368888886331 112222245678999999
Q ss_pred ecCCCeEEEEeCCCCeEEEEECCCCc--eEEEE--------ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC
Q psy13629 183 DWLTEKLYWTDSETNKLEVSSLDGKK--RKVLY--------WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP 252 (395)
Q Consensus 183 D~~~~~LYwtd~~~~~I~v~~ldg~~--~~~l~--------~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~ 252 (395)
|+ .++||++|...++|.+++++|.. ...+- ...+..|++|++||.++.||++|.....+|.+.+.+|
T Consensus 99 d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-- 175 (329)
T 3fvz_A 99 DT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-- 175 (329)
T ss_dssp CT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS--
T ss_pred CC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC--
Confidence 97 66699999999999999999983 33332 2346689999999989999999942478999999998
Q ss_pred cceEEEEe---------cCCcCceeEEEeccccEEEEeccceeeeeeeccc-cceeee
Q psy13629 253 RHRKVIVD---------STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD-GYVRLV 300 (395)
Q Consensus 253 ~~~~~lv~---------~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d-G~~~~~ 300 (395)
.....+.. ..+..|+||++|..+++||++|...++|.+.+.+ |.....
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 44444432 2345799999998779999999999999999998 654443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-14 Score=144.34 Aligned_cols=162 Identities=9% Similarity=0.045 Sum_probs=125.3
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
.+..|.++++|+.++.|||+|..+++|++++.++.. ....+.. .....+.+||+|+.++.||++|..+++|.+++++
T Consensus 226 ~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~--~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 226 NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT--LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC--EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe--EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 577899999999888999999999999999998431 1123332 2334566899999888899999999999999988
Q ss_pred CCc-----eEEEEec--------------CCCCceeEEE--------eCCCCeEEEEeeCCCCeEEEEecCCCCcceEEE
Q psy13629 206 GKK-----RKVLYWE--------------DIDQPRAIAL--------VPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVI 258 (395)
Q Consensus 206 g~~-----~~~l~~~--------------~~~~P~~iav--------dp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~l 258 (395)
+.. ..++... .+..|.+|++ |...|.|||+|++ +.+|.+++.+| . ..++
T Consensus 304 ~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~-n~~I~~~~~~G--~-v~t~ 379 (433)
T 4hw6_A 304 RETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD-SHTVRVLTPEG--R-VTTY 379 (433)
T ss_dssp TTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT-TTEEEEECTTS--E-EEEE
T ss_pred CCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC-CCEEEEECCCC--C-EEEE
Confidence 532 1233321 3678999999 2458899999976 88999999888 3 3334
Q ss_pred Eec-----------------CCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 259 VDS-----------------TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 259 v~~-----------------~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
... .+.+|.||++|+.+++||++|..+++|.+++++
T Consensus 380 ~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 380 AGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 322 256899999998889999999999999988764
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-14 Score=144.07 Aligned_cols=170 Identities=8% Similarity=0.000 Sum_probs=131.6
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEcc-------CCCC------C---ceEEE-EeCCCCCcceEEEecCCCeE
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-------GNNV------G---SKHNV-ITNGLITPDGLAIDWLTEKL 189 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~d-------g~~~------~---~~~~i-~~~~~~~p~glAVD~~~~~L 189 (395)
...++.|+++|+.++.||++|...++|++++++ +... . ....+ .......|.+||+|+.++.|
T Consensus 245 ~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~l 324 (496)
T 3kya_A 245 AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYA 324 (496)
T ss_dssp EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEE
Confidence 567899999999999999999999999999998 3321 0 01222 23344678999999988789
Q ss_pred EEEeCCCCeEEEEECCCCce-----EEEEec--------------CCCCce-eEEEeC------CCCeEEEEeeCCCCeE
Q psy13629 190 YWTDSETNKLEVSSLDGKKR-----KVLYWE--------------DIDQPR-AIALVP------QDSIMFWTDWGEVPKI 243 (395)
Q Consensus 190 Ywtd~~~~~I~v~~ldg~~~-----~~l~~~--------------~~~~P~-~iavdp------~~g~LYwtd~~~~~~I 243 (395)
|++|..+++|.++++++... .++... .+..|. +++++. ..|.||++|++ +++|
T Consensus 325 YvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~-N~rI 403 (496)
T 3kya_A 325 YFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL-NFCV 403 (496)
T ss_dssp EEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG-GTEE
T ss_pred EEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC-CCEE
Confidence 99999999999999888642 333321 357899 888873 57899999977 8999
Q ss_pred EEEecCCCCcceEEEEec-----------------------CCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 244 ERGAMNGDPRHRKVIVDS-----------------------TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 244 ~~~~~dG~~~~~~~lv~~-----------------------~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
.+++.+| ...++... .+.+|.||++|..+++||++|..+++|.++++++..-..
T Consensus 404 r~i~~~G---~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 404 RKVTPEG---IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEECTTC---BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred EEEeCCC---CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 9999888 34445432 256899999997679999999999999999998876554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-14 Score=131.97 Aligned_cols=180 Identities=17% Similarity=0.209 Sum_probs=135.7
Q ss_pred EEEEeeCCCCCccEEe-cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~-~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.|.+++.++ ...... ......+.++++|+.+ +||+++...+.|.+++..+. ............|.+|++|. .+
T Consensus 88 ~i~~~d~~~-~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~---~~~~~~~~~~~~p~~i~~~~-~g 161 (270)
T 1rwi_B 88 RVVTLAAGS-NNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSK---TQTVLPFTGLNDPDGVAVDN-SG 161 (270)
T ss_dssp EEEEECTTC-SCCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCC---SCEECCCCSCCSCCCEEECT-TC
T ss_pred EEEEEeCCC-ceEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCc---eeEeeccccCCCceeEEEeC-CC
Confidence 577788776 333322 3455789999999865 59999988899999954432 12222234557899999998 56
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
+||+++...+.|.++++++..........+..|.+|++|+. |.||+++++ ..+|.+.+.+| ..........+..|.
T Consensus 162 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~-g~l~v~~~~-~~~v~~~~~~~--~~~~~~~~~~~~~p~ 237 (270)
T 1rwi_B 162 NVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHN-TNQVVKLLAGS--TTSTVLPFTGLNTPL 237 (270)
T ss_dssp CEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT-CCEEEEETT-TSCEEEECTTC--SCCEECCCCSCSCEE
T ss_pred CEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCC-CCEEEEECC-CCcEEEEcCCC--CcceeeccCCCCCce
Confidence 79999988899999999987765544345688999999985 599999965 67899999988 444333334457899
Q ss_pred eEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
++++|.. ++||+++...++|..++++...+.
T Consensus 238 ~i~~~~~-g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 238 AVAVDSD-RTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp EEEECTT-CCEEEEEGGGTEEEEECCCGGGSC
T ss_pred eEEECCC-CCEEEEECCCCEEEEEcCCCcccc
Confidence 9999965 579999999999999998876554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-13 Score=138.61 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=138.9
Q ss_pred EEEEEeeCCCCCccEEecCC----CCCeEEEEE-------EcCCCEEEEEECCCC------eEEEEEccCCCCCc----e
Q psy13629 108 LDIRIANLSRPLKPVTIIKD----LEEGAAIDY-------YYKKSMVCWTDHGTE------MISCCTFDGNNVGS----K 166 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~----~~~~~gl~~-------d~~~~~lywsd~~~~------~I~~~~~dg~~~~~----~ 166 (395)
+.|+++|++. ..+..+... +.+|.+|+| |..++.||++|...+ .|+.+..+...... .
T Consensus 162 ~~i~~ID~~~-~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~ 240 (496)
T 3kya_A 162 KAIQLIDLKN-RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDI 240 (496)
T ss_dssp EEEEEEETTT-TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCE
T ss_pred CeEEEEECCC-CEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccc
Confidence 4788899877 455444432 447999999 999999999998762 37777544311111 1
Q ss_pred EEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC-------CCce------------EEEEe-cCCCCceeEEEe
Q psy13629 167 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-------GKKR------------KVLYW-EDIDQPRAIALV 226 (395)
Q Consensus 167 ~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld-------g~~~------------~~l~~-~~~~~P~~iavd 226 (395)
..+. ....|.++++|+.++.||++|...++|.+++++ +... ..+.. .....|++|+++
T Consensus 241 ~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~ 318 (496)
T 3kya_A 241 QLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH 318 (496)
T ss_dssp EEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC
T ss_pred eeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEc
Confidence 2222 467999999999999999999999999999997 3322 23332 345679999999
Q ss_pred CCCCeEEEEeeCCCCeEEEEecCCCCc---ceEEEEec--------------CCcCce-eEEEec------cccEEEEec
Q psy13629 227 PQDSIMFWTDWGEVPKIERGAMNGDPR---HRKVIVDS--------------TIFWPN-GIAIDF------NNRLLYWID 282 (395)
Q Consensus 227 p~~g~LYwtd~~~~~~I~~~~~dG~~~---~~~~lv~~--------------~~~~P~-glalD~------~~~rLYwaD 282 (395)
|..++||++|++ +++|.+++.||... ...+++.. .+..|. |+++|- .++.||++|
T Consensus 319 p~G~~lYvaD~~-~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD 397 (496)
T 3kya_A 319 PTGKYAYFGVIN-NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVD 397 (496)
T ss_dssp TTSSEEEEEETT-TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEE
T ss_pred CCCCEEEEEeCC-CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEE
Confidence 998889999955 88999999998311 12445543 356899 788873 568999999
Q ss_pred cceeeeeeeccccceeee
Q psy13629 283 GRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 283 ~~~~~I~~~~~dG~~~~~ 300 (395)
...++|.+++.+|.....
T Consensus 398 ~~N~rIr~i~~~G~v~Ti 415 (496)
T 3kya_A 398 RLNFCVRKVTPEGIVSTY 415 (496)
T ss_dssp GGGTEEEEECTTCBEEEE
T ss_pred CCCCEEEEEeCCCCEEEE
Confidence 999999999999854444
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-14 Score=129.14 Aligned_cols=180 Identities=17% Similarity=0.200 Sum_probs=130.9
Q ss_pred EEEEeeCCCCCccEEe-cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~-~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.|.+++..+ ...... ......+.+|++|+.++ ||+++. .+.|.+++.++. ....+.......|.+|++|+ .+
T Consensus 47 ~i~~~~~~~-~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~---~~~~~~~~~~~~p~~i~~~~-~g 119 (270)
T 1rwi_B 47 RVVKLATGS-TGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSN---NQTVLPFDGLNYPEGLAVDT-QG 119 (270)
T ss_dssp EEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCS---CCEECCCCSCSSEEEEEECT-TC
T ss_pred cEEEecCCC-cccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCc---eEeeeecCCcCCCcceEECC-CC
Confidence 566776654 222222 33456899999998655 999997 889999998875 22333334557899999998 67
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
+||+++...+.|.+++..+.............|++|++|+ +|.||+++.+ ..+|.+.+.++ ..........+..|.
T Consensus 120 ~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~~--~~~~~~~~~~~~~p~ 195 (270)
T 1rwi_B 120 AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTD-NNRVVKLEAES--NNQVVLPFTDITAPW 195 (270)
T ss_dssp CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGG-GTEEEEECTTT--CCEEECCCSSCCSEE
T ss_pred CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECC-CCEEEEEecCC--CceEeecccCCCCce
Confidence 7999998889999997655444333324467899999998 4569999955 67899999988 443333334457899
Q ss_pred eEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
+|++|.. ++||+++...++|.+++.+|.....
T Consensus 196 ~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 196 GIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTV 227 (270)
T ss_dssp EEEECTT-CCEEEEETTTSCEEEECTTCSCCEE
T ss_pred EEEECCC-CCEEEEECCCCcEEEEcCCCCccee
Confidence 9999965 4999999989999999998865443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-12 Score=120.97 Aligned_cols=182 Identities=13% Similarity=0.137 Sum_probs=136.2
Q ss_pred EEEEeeCCCCCccEEec------CCCCCeEEEEEEcCCCEEEEEECC-CCeEEEEEccCCCCCceEEEEeCCCCCcceEE
Q psy13629 109 DIRIANLSRPLKPVTII------KDLEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHNVITNGLITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~------~~~~~~~gl~~d~~~~~lywsd~~-~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glA 181 (395)
.|.+++.++ .....+. .....+.+++++..++.||+++.. ++.|.+++.+|. ....+.......|.+|+
T Consensus 52 ~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~i~ 127 (286)
T 1q7f_A 52 RIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ---FVRKFGATILQHPRGVT 127 (286)
T ss_dssp EEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC---EEEEECTTTCSCEEEEE
T ss_pred EEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCc---EEEEecCccCCCceEEE
Confidence 577787765 3322222 124579999998778899999964 789999997774 22333334557899999
Q ss_pred EecCCCeEEEEeCCCCeEEEEECCCCceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe
Q psy13629 182 IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 182 VD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
+|+ .++||+++...++|.+++.+|.....+.. ..+..|++|++|+ +|.||+++.. ..+|.+.+.+| .....+..
T Consensus 128 ~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g--~~~~~~~~ 202 (286)
T 1q7f_A 128 VDN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR-AHCVKVFNYEG--QYLRQIGG 202 (286)
T ss_dssp ECT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG-GTEEEEEETTC--CEEEEESC
T ss_pred EeC-CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECC-CCCEEEEECC-CCEEEEEcCCC--CEEEEEcc
Confidence 998 56799999989999999999876665542 3467899999998 5689999955 67899999988 43333332
Q ss_pred c-CCcCceeEEEeccccEEEEecccee-eeeeeccccceeee
Q psy13629 261 S-TIFWPNGIAIDFNNRLLYWIDGRLT-FIEVMDYDGYVRLV 300 (395)
Q Consensus 261 ~-~~~~P~glalD~~~~rLYwaD~~~~-~I~~~~~dG~~~~~ 300 (395)
. .+..|.+|++|. +++||+++...+ +|...+.+|.....
T Consensus 203 ~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~ 243 (286)
T 1q7f_A 203 EGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISA 243 (286)
T ss_dssp TTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEE
T ss_pred CCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEE
Confidence 2 256899999995 468999998886 99999988865443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.6e-13 Score=126.40 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=121.1
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe----CCCCCcceEEEecCCCeEEEEeCC---------
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT----NGLITPDGLAIDWLTEKLYWTDSE--------- 195 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~----~~~~~p~glAVD~~~~~LYwtd~~--------- 195 (395)
..|.||++++.++.||++|.. +.|.+++.++. ..+.+.. ..+..|+++++|+..++||++|..
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g---~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~ 155 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEGG---HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQ 155 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETT-TEEEEECTTCE---ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHH
T ss_pred CCCceEEEcCCCCcEEEEECC-CCEEEEeCCCC---EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccc
Confidence 479999999867899999965 45888887753 2223321 124679999999756799999965
Q ss_pred --------CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc-ceEEEEecCCcCc
Q psy13629 196 --------TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR-HRKVIVDSTIFWP 266 (395)
Q Consensus 196 --------~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~-~~~~lv~~~~~~P 266 (395)
.++|.+++.++.....+. ..+..|++|+++++.+.||++|.. ..+|.+++++|... ..+.+.. ..+ |
T Consensus 156 ~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~-~~~I~~~~~~~~~~~~~~~~~~-~~g-P 231 (322)
T 2fp8_A 156 QIMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFL-SHQIVKYWLEGPKKGTAEVLVK-IPN-P 231 (322)
T ss_dssp HHHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGG-GTEEEEEESSSTTTTCEEEEEE-CSS-E
T ss_pred eehcccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCCCCEEEEEeCC-CCeEEEEECCCCcCCccceEEe-CCC-C
Confidence 267999999876665554 567889999999988899999965 67999999987322 2334443 223 9
Q ss_pred eeEEEeccccEEEEeccc----------eeeeeeeccccceee
Q psy13629 267 NGIAIDFNNRLLYWIDGR----------LTFIEVMDYDGYVRL 299 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~----------~~~I~~~~~dG~~~~ 299 (395)
+||++|. +++||+++.. .++|.+++.+|....
T Consensus 232 ~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~ 273 (322)
T 2fp8_A 232 GNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILE 273 (322)
T ss_dssp EEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEE
T ss_pred CCeEECC-CCCEEEEecCcccccccCCCccEEEEECCCCCEEE
Confidence 9999995 5579999976 578999998876543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=124.24 Aligned_cols=162 Identities=10% Similarity=0.053 Sum_probs=122.0
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-------------------CCCCcceEEEecCCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-------------------GLITPDGLAIDWLTE 187 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-------------------~~~~p~glAVD~~~~ 187 (395)
.+..|.++++|+. +.++|++..+++|++++.++. ....+... ....|.||++|...+
T Consensus 17 ~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 17 PSYAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNS---GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp SSSCCCCEECCTT-CSSEEEECTTSEEEEECCTTT---CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred ccCCceEEEEcCC-CCEEEEEcCCCeEEEECCCCC---ceEEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 3678999999986 557788888899999988764 22333221 124799999997689
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEec----CCCCceeEEEeCCCCeEEEEeeCC----------------CCeEEEEe
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWE----DIDQPRAIALVPQDSIMFWTDWGE----------------VPKIERGA 247 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~----~~~~P~~iavdp~~g~LYwtd~~~----------------~~~I~~~~ 247 (395)
+||++|.. +.|.++++++...+.+... .+..|+++++|+..|.||++|++. ..+|++.+
T Consensus 93 ~l~v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 93 QLYIVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEEEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred cEEEEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 99999976 4589999887655555421 256799999998567999999652 25789988
Q ss_pred cCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 248 MNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 248 ~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
.++ ...+.+ ...+..|+||+++.+++.||++|...++|.++++++.
T Consensus 172 ~~~--~~~~~~-~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 172 PST--KETTLL-LKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp TTT--TEEEEE-EEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred CCC--CEEEEe-ccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 875 233333 3446789999999888899999999999999998863
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.5e-12 Score=118.93 Aligned_cols=167 Identities=17% Similarity=0.259 Sum_probs=128.8
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCe
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNK 198 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~ 198 (395)
.....+......+.|.+|++.++.|||+|...+.|++++.+|. .. ........|.++++|+ .++||+++...+.
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~----~~-~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~ 108 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT----VD-VLLDATAFTNGNAVDA-QQRLVHCEHGRRA 108 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC----EE-EEEESCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC----EE-EEeCCCCccceeeECC-CCCEEEEECCCCE
Confidence 5677788888899999999999999999999999999988663 23 3333456799999998 5679999988889
Q ss_pred EEEEECCCCceEEEEec----CCCCceeEEEeCCCCeEEEEee--CC--------------CCeEEEEecCCCCcceEEE
Q psy13629 199 LEVSSLDGKKRKVLYWE----DIDQPRAIALVPQDSIMFWTDW--GE--------------VPKIERGAMNGDPRHRKVI 258 (395)
Q Consensus 199 I~v~~ldg~~~~~l~~~----~~~~P~~iavdp~~g~LYwtd~--~~--------------~~~I~~~~~dG~~~~~~~l 258 (395)
|.+++.+|+.. .+... .+..|+++++++ .|.||+||. +. ...|++++.++ ...+.+
T Consensus 109 v~~~~~~g~~~-~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~--g~~~~~ 184 (305)
T 3dr2_A 109 ITRSDADGQAH-LLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG--SPLQRM 184 (305)
T ss_dssp EEEECTTSCEE-EEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS--CCCEEE
T ss_pred EEEECCCCCEE-EEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC--CcEEEE
Confidence 99999997643 33321 246799999998 678999874 11 35799999854 223333
Q ss_pred EecCCcCceeEEEeccccEEEEeccce-----eeeeeeccccce
Q psy13629 259 VDSTIFWPNGIAIDFNNRLLYWIDGRL-----TFIEVMDYDGYV 297 (395)
Q Consensus 259 v~~~~~~P~glalD~~~~rLYwaD~~~-----~~I~~~~~dG~~ 297 (395)
. .+..|+|++++.+++.|||+|... +.|.+.++++..
T Consensus 185 ~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 185 A--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp E--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred e--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence 3 566899999999999999999863 788888877543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.2e-12 Score=117.12 Aligned_cols=165 Identities=15% Similarity=0.214 Sum_probs=127.3
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-----CCCCCcceEEEecCCCeEEEEeCC-CCeEE
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-----NGLITPDGLAIDWLTEKLYWTDSE-TNKLE 200 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-----~~~~~p~glAVD~~~~~LYwtd~~-~~~I~ 200 (395)
.+..|.++++++.+ .||+++..+++|.+++.++. ....+.. ..+..|.+++++...++||+++.. .+.|.
T Consensus 28 ~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 28 QFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp CBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred ccCCCceEEECCCC-CEEEEECCCCEEEEECCCCc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 45789999999865 59999988899999998864 2222221 134679999997678999999965 78999
Q ss_pred EEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe-cCCcCceeEEEeccccEEE
Q psy13629 201 VSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD-STIFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 201 v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~-~~~~~P~glalD~~~~rLY 279 (395)
+++.+|+....+.......|++|++++. |.||+++.. ..+|.+.+.+| .....+.. .....|++|++|. +++||
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~-~~~i~~~~~~g--~~~~~~~~~~~~~~p~~i~~~~-~g~l~ 178 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDNK-GRIIVVECK-VMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVND-KQEIF 178 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECTT-SCEEEEETT-TTEEEEECTTS--CEEEEEECTTTCSSEEEEEECS-SSEEE
T ss_pred EECCCCcEEEEecCccCCCceEEEEeCC-CCEEEEECC-CCEEEEEcCCC--CEEEEeCCCCccCCcEEEEECC-CCCEE
Confidence 9998887766554345678999999985 579999954 67899999888 43333332 3456899999995 46799
Q ss_pred Eeccceeeeeeeccccceeee
Q psy13629 280 WIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 280 waD~~~~~I~~~~~dG~~~~~ 300 (395)
+++...++|.+.+.+|.....
T Consensus 179 v~~~~~~~i~~~~~~g~~~~~ 199 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEGQYLRQ 199 (286)
T ss_dssp EEEGGGTEEEEEETTCCEEEE
T ss_pred EEECCCCEEEEEcCCCCEEEE
Confidence 999999999999988865443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-11 Score=118.32 Aligned_cols=180 Identities=14% Similarity=0.075 Sum_probs=131.3
Q ss_pred EEEEeeCCCCCccEEecCCCC------CeEEEEEEcCCCEEEEEECC-CCeEEEEEccCCCCCceEEEEeCCCCCcceEE
Q psy13629 109 DIRIANLSRPLKPVTIIKDLE------EGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHNVITNGLITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~------~~~gl~~d~~~~~lywsd~~-~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glA 181 (395)
.|.++|+.. .+.....+... .|.+|++ .+++||+++.+ ++.|.+++.+.. .....+. ....|.+++
T Consensus 106 ~v~~iD~~t-~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~---~~~~~i~-~g~~p~~i~ 178 (328)
T 3dsm_A 106 RIFIINPKT-YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD---KVVDELT-IGIQPTSLV 178 (328)
T ss_dssp EEEEEETTT-TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT---EEEEEEE-CSSCBCCCE
T ss_pred eEEEEECCC-CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC---eEEEEEE-cCCCccceE
Confidence 578888766 44433333333 7889999 47899999984 889999998864 2222222 245799999
Q ss_pred EecCCCeEEEEeCCC----------CeEEEEECCCCceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 182 IDWLTEKLYWTDSET----------NKLEVSSLDGKKRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 182 VD~~~~~LYwtd~~~----------~~I~v~~ldg~~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
+|+ .+++|+++... +.|.+.+.++......+. .....|++|+++|++++||+++. .|++++.+.
T Consensus 179 ~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~----~v~~~d~~t 253 (328)
T 3dsm_A 179 MDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN----DIWRMPVEA 253 (328)
T ss_dssp ECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS----SEEEEETTC
T ss_pred EcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc----EEEEEECCC
Confidence 997 67799998765 799999998655443332 23468999999999999999982 799999875
Q ss_pred CCcceEEEEecCCcCceeEEEeccccEEEEec----cceeeeeeeccccceeee
Q psy13629 251 DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID----GRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 251 ~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD----~~~~~I~~~~~dG~~~~~ 300 (395)
.......++......|.||++|+.+++||+++ ...++|.+++.+|.....
T Consensus 254 ~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~ 307 (328)
T 3dsm_A 254 DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDE 307 (328)
T ss_dssp SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEE
T ss_pred CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEE
Confidence 21111112222246799999998899999999 788999999999766655
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-11 Score=113.54 Aligned_cols=178 Identities=15% Similarity=0.092 Sum_probs=131.4
Q ss_pred EEEEeeCCCCCccEEecC-CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIK-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~-~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~ 186 (395)
.|.+++.++ .......+ ....+.++++|+. ++||+++...+.|.+++.+|. ...... .....|.+|++|. .
T Consensus 84 ~v~~~d~~g-~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~-~ 156 (300)
T 2qc5_A 84 KIGKLSKKG-GFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTADGT----IYEYDLPNKGSYPAFITLGS-D 156 (300)
T ss_dssp EEEEECTTS-CEEEEECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECTTSC----EEEEECSSTTCCEEEEEECT-T
T ss_pred eEEEECCCC-CeEEecCCCCCCCCccceECCC-CCEEEEccCCCeEEEECCCCC----EEEccCCCCCCCceeEEECC-C
Confidence 467777664 22222222 3477999999964 569999987889999998853 232322 3467899999997 5
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
++||+++...+.|.+++.+|.............|.+|++|+ +|.||+++.. ...|.+.+.+| .............|
T Consensus 157 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~-~~~i~~~~~~g--~~~~~~~~~~~~~~ 232 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIM-GNKIGRITTTG--EISEYDIPTPNARP 232 (300)
T ss_dssp SSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEEEETT-TTEEEEECTTC--CEEEEECSSTTCCE
T ss_pred CCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECC-CCCEEEEccC-CCEEEEEcCCC--cEEEEECCCCCCCc
Confidence 66999998889999999977765433324567899999998 5789999954 67899999977 33333333456689
Q ss_pred eeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
.+|++|.. ++||+++...+.|.+++.+|...
T Consensus 233 ~~i~~d~~-g~l~v~~~~~~~i~~~~~~g~~~ 263 (300)
T 2qc5_A 233 HAITAGKN-SEIWFTEWGANQIGRITNDNTIQ 263 (300)
T ss_dssp EEEEECST-TCEEEEETTTTEEEEECTTSCEE
T ss_pred eEEEECCC-CCEEEeccCCCeEEEECCCCcEE
Confidence 99999955 67999998889999999876443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-11 Score=113.17 Aligned_cols=172 Identities=15% Similarity=0.149 Sum_probs=127.4
Q ss_pred EEEEeeCCCCCccEEec-CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~-~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~ 186 (395)
.|.+++.++ ....... .....+.++++|+.++ ||+++...+.|.+++.++. ...+.. .....|.+|++|. .
T Consensus 126 ~i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~d~-~ 198 (300)
T 2qc5_A 126 RIGKLTADG-TIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITNTGK----LEEYPLPTNAAAPVGITSGN-D 198 (300)
T ss_dssp EEEEECTTS-CEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECT-T
T ss_pred eEEEECCCC-CEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECCCCc----EEEeeCCCCCCCcceEEECC-C
Confidence 467777764 2222222 2467899999998765 9999988899999998664 222322 3467899999997 6
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
++||+++...+.|.+++.+|.............|.+|++|+. |.||+++++ ...|.+++.+| .-....+......|
T Consensus 199 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~-~~~i~~~~~~g--~~~~~~~~~~~~~~ 274 (300)
T 2qc5_A 199 GALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKN-SEIWFTEWG-ANQIGRITNDN--TIQEYQLQTENAEP 274 (300)
T ss_dssp SSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECST-TCEEEEETT-TTEEEEECTTS--CEEEEECCSTTCCC
T ss_pred CCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCC-CCEEEeccC-CCeEEEECCCC--cEEEEECCccCCcc
Confidence 799999998899999999777655444345788999999986 679999955 67899999977 33333333345689
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
.+|++|. +++||+++. . .|.+++++
T Consensus 275 ~~i~~~~-~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 275 HGITFGK-DGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CCEEECT-TSCEEEECS-S-EEEEEEEC
T ss_pred ceeEeCC-CCCEEEEcc-C-ceEEeCCC
Confidence 9999995 467999998 4 78777653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-11 Score=115.91 Aligned_cols=177 Identities=8% Similarity=0.025 Sum_probs=127.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCC--eEEEEEccCCCCCceEEEEe-CCCCCcceEEEecC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~--~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~ 185 (395)
.|.+++.++ . ..........+.||++++.++ ||++|...+ +|.+++.... ....+.. .....++|+++ |.
T Consensus 54 ~I~~~d~~g-~-~~~~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g---~~~~~~~~~~~~~~~g~~~-~~ 126 (306)
T 2p4o_A 54 EIVSITPDG-N-QQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDG---TVETLLTLPDAIFLNGITP-LS 126 (306)
T ss_dssp EEEEECTTC-C-EEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTS---CEEEEEECTTCSCEEEEEE-SS
T ss_pred eEEEECCCC-c-eEEEEeCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCC---eEEEEEeCCCccccCcccc-cC
Confidence 577777766 2 333344456899999998765 899996543 5888775443 2333332 34566889987 56
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEE-E---------ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC--CCc
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVL-Y---------WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG--DPR 253 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l-~---------~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG--~~~ 253 (395)
.+.+|++|...++|++++.++...++. . ...+..|+|| +++.++||++|.. ..+|.++++++ ...
T Consensus 127 ~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~-~~~I~~~~~~~~g~~~ 203 (306)
T 2p4o_A 127 DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE-KMLLLRIPVDSTDKPG 203 (306)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT-TTEEEEEEBCTTSCBC
T ss_pred CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC-CCEEEEEEeCCCCCCC
Confidence 889999998889999999876432221 1 1245689998 7778899999955 78999999984 223
Q ss_pred ceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 254 HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 254 ~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
.++++.. ...|.||++|. +++||+++...++|.+++.+|...
T Consensus 204 ~~~~~~~--~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~G~~~ 245 (306)
T 2p4o_A 204 EPEIFVE--QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTT 245 (306)
T ss_dssp CCEEEEE--SCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEE
T ss_pred ccEEEec--cCCCCCeEECC-CCCEEEEeCCCCeEEEECCCCCEE
Confidence 3444443 35799999995 468999999999999999987643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-11 Score=116.02 Aligned_cols=179 Identities=11% Similarity=0.015 Sum_probs=127.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC----CCCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN----GLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~----~~~~p~glAVD~ 184 (395)
.|.+++.++ .... .......+.++++++.++ ||++. .+.|.+++.++. ..+.+... ....|+++++|+
T Consensus 36 ~i~~~d~~~-~~~~-~~~~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g---~~~~~~~~~~~~~~~~~~di~~d~ 107 (297)
T 3g4e_A 36 KVCRWDSFT-KQVQ-RVTMDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQ---SAVVLATVDNDKKNNRFNDGKVDP 107 (297)
T ss_dssp EEEEEETTT-CCEE-EEECSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTT---EEEEEEECCTTCSSEEEEEEEECT
T ss_pred EEEEEECCC-CcEE-EEeCCCceEEEEECCCCC-EEEEE--CCeEEEEECCCC---cEEEEEecCCCCCCCCCCCEEECC
Confidence 667788776 3332 223346789999998877 66665 568999998764 33334332 235689999998
Q ss_pred CCCeEEEEeC-----------CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC---C
Q psy13629 185 LTEKLYWTDS-----------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN---G 250 (395)
Q Consensus 185 ~~~~LYwtd~-----------~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d---G 250 (395)
.++||+++. ..+.|++++.+|+... + ...+..|++|+++|+.+.|||++.. ..+|.+.+++ |
T Consensus 108 -dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~-~~~~~~pngi~~spdg~~lyv~~~~-~~~i~~~~~d~~~G 183 (297)
T 3g4e_A 108 -AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y-FDQVDISNGLDWSLDHKIFYYIDSL-SYSVDAFDYDLQTG 183 (297)
T ss_dssp -TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E-EEEESBEEEEEECTTSCEEEEEEGG-GTEEEEEEECTTTC
T ss_pred -CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-E-eeccccccceEEcCCCCEEEEecCC-CCcEEEEeccCCCC
Confidence 567999873 3457888888775443 3 3567889999999999999999944 6789999875 3
Q ss_pred CCcceEEEEec--CCcCceeEEEeccccEEEEeccceeeeeeeccc-cceeee
Q psy13629 251 DPRHRKVIVDS--TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD-GYVRLV 300 (395)
Q Consensus 251 ~~~~~~~lv~~--~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d-G~~~~~ 300 (395)
...+++.+... ....|.||++|. +++||+++...++|.+++.+ |.....
T Consensus 184 ~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 184 QISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp CEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred cccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 22234455442 245799999995 46899999888999999997 654443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-11 Score=113.54 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=121.3
Q ss_pred ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 124 IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 124 ~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
+.....-+.|..|++.++.|||+|...++|++++.++. ...... ....|.++++|+. ++||++. .+.|.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~---~~~~~~--~~~~~~~i~~~~d-G~l~v~~--~~~l~~~d 79 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK---QVQRVT--MDAPVSSVALRQS-GGYVATI--GTKFCALN 79 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEE--CSSCEEEEEEBTT-SSEEEEE--TTEEEEEE
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCC---cEEEEe--CCCceEEEEECCC-CCEEEEE--CCeEEEEE
Confidence 34456678999999999999999999999999999875 222222 2357999999985 5587776 46899999
Q ss_pred CCCCceEEEEec----CCCCceeEEEeCCCCeEEEEeeCC----------CCeEEEEecCCCCcceEEEEecCCcCceeE
Q psy13629 204 LDGKKRKVLYWE----DIDQPRAIALVPQDSIMFWTDWGE----------VPKIERGAMNGDPRHRKVIVDSTIFWPNGI 269 (395)
Q Consensus 204 ldg~~~~~l~~~----~~~~P~~iavdp~~g~LYwtd~~~----------~~~I~~~~~dG~~~~~~~lv~~~~~~P~gl 269 (395)
+++...+.+... ....|+++++||. |.||+++++. ..+|++++.+| .... +...+..|+|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~--~~~~~~~pngi 154 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLERHQGALYSLFPDH--HVKK--YFDQVDISNGL 154 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCTTCEEEEEECTTS--CEEE--EEEEESBEEEE
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCC-CCEEEecCCcccccccccCCCcEEEEEECCC--CEEE--Eeeccccccce
Confidence 987666655532 2356899999984 6699988642 24799998887 3332 33456689999
Q ss_pred EEeccccEEEEeccceeeeeeeccc
Q psy13629 270 AIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 270 alD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+++.+++.|||+|...++|.+.+++
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred EEcCCCCEEEEecCCCCcEEEEecc
Confidence 9999999999999999999998875
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.5e-11 Score=112.79 Aligned_cols=163 Identities=16% Similarity=0.120 Sum_probs=127.4
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCe
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNK 198 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~ 198 (395)
.....+......+.|++||+.++.|||++...+.|++++.++. ..........|.+|++|+ .++||+++...+.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRR 91 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECT-TCCEEEEETTTTE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECC-CCcEEEEecCCCe
Confidence 4566777788889999999999999999999999999999874 233344556799999998 6779999988899
Q ss_pred EEEEEC-CCCceEEEEec----CCCCceeEEEeCCCCeEEEEeeC----------------CCCeEEEEecCCCCcceEE
Q psy13629 199 LEVSSL-DGKKRKVLYWE----DIDQPRAIALVPQDSIMFWTDWG----------------EVPKIERGAMNGDPRHRKV 257 (395)
Q Consensus 199 I~v~~l-dg~~~~~l~~~----~~~~P~~iavdp~~g~LYwtd~~----------------~~~~I~~~~~dG~~~~~~~ 257 (395)
|.+.++ +|+ .+.+... ....|+++++|| .|.||+||.. ....|++++.+| .-.
T Consensus 92 i~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g--~~~-- 165 (296)
T 3e5z_A 92 LERQREPGGE-WESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG--TLS-- 165 (296)
T ss_dssp EEEECSTTCC-EEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS--CEE--
T ss_pred EEEEcCCCCc-EEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCC--CEE--
Confidence 999999 554 3343321 246789999998 6689998741 135899998886 322
Q ss_pred EEecCCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 258 IVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 258 lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
.+......|+|++++++++.| |++...++|.+.+++
T Consensus 166 ~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 166 APIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLN 201 (296)
T ss_dssp EEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEEC
T ss_pred EeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEEC
Confidence 334567789999999888777 999988999998885
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-11 Score=110.55 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=128.2
Q ss_pred EEEEeeCCCCCccEEecC-CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIK-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~-~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~~~~~p~glAVD~~~ 186 (395)
.|.+++.++ .......+ ....+.++++|+. +.||+++...+.|.+++.++. ...+. ......|.+|++|. .
T Consensus 79 ~i~~~~~~g-~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~~g~----~~~~~~~~~~~~~~~i~~~~-~ 151 (299)
T 2z2n_A 79 KIGRITKKG-IIKEYTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITDDGK----IREYELPNKGSYPSFITLGS-D 151 (299)
T ss_dssp EEEEECTTS-CEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTTCC----EEEEECSSTTCCEEEEEECT-T
T ss_pred eEEEECCCC-cEEEEeCCCcCCCceeeEECCC-CCEEEEecCCceEEEECCCCC----EEEecCCCCCCCCceEEEcC-C
Confidence 466677654 22222222 4568999999975 579999988889999988653 23232 23456899999997 5
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
++||+++...+.|.+++.+|+............|.+|++|+. |.||++++. ...|.+++.+| .............|
T Consensus 152 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~-~~~i~~~~~~g--~~~~~~~~~~~~~~ 227 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGND-DALWFVEII-GNKIGRITTSG--EITEFKIPTPNARP 227 (299)
T ss_dssp SCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTT-SSEEEEETT-TTEEEEECTTC--CEEEEECSSTTCCE
T ss_pred CCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCC-CCEEEEccC-CceEEEECCCC--cEEEEECCCCCCCc
Confidence 799999988899999999666544333345778999999985 679999854 67899999976 33322233345689
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
.+|++|.. ++||+++...+.|.+++.+|.
T Consensus 228 ~~i~~~~~-g~l~v~~~~~~~i~~~d~~g~ 256 (299)
T 2z2n_A 228 HAITAGAG-IDLWFTEWGANKIGRLTSNNI 256 (299)
T ss_dssp EEEEECST-TCEEEEETTTTEEEEEETTTE
T ss_pred eeEEECCC-CCEEEeccCCceEEEECCCCc
Confidence 99999954 679999988889999998764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-10 Score=109.54 Aligned_cols=177 Identities=13% Similarity=0.095 Sum_probs=129.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe--C--CCCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT--N--GLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~--~--~~~~p~glAVD~ 184 (395)
.|.+++.++ . ...+......+.++++++.++ ||+++...+.|.+++.+.. ....+.. . ....|+++++|+
T Consensus 51 ~i~~~~~~~-~-~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~d~ 124 (296)
T 3e5z_A 51 RTWAWSDDG-Q-LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQREPGG---EWESIADSFEGKKLNSPNDVCLAP 124 (296)
T ss_dssp EEEEEETTS-C-EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEECSTTC---CEEEEECEETTEECCCCCCEEECT
T ss_pred EEEEEECCC-C-eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEcCCCC---cEEEEeeccCCCCCCCCCCEEECC
Confidence 678888877 3 555556677899999998654 8899877889999998433 2233321 1 245789999998
Q ss_pred CCCeEEEEeC-----------------CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe
Q psy13629 185 LTEKLYWTDS-----------------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA 247 (395)
Q Consensus 185 ~~~~LYwtd~-----------------~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~ 247 (395)
.++||++|. ..+.|++++.+|.. ..+ ......|++++++|+++.| |++. ...+|.+.+
T Consensus 125 -~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~-~~~~~~~~gi~~s~dg~~l-v~~~-~~~~i~~~~ 199 (296)
T 3e5z_A 125 -DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL-SAP-IRDRVKPNGLAFLPSGNLL-VSDT-GDNATHRYC 199 (296)
T ss_dssp -TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE-EEE-ECCCSSEEEEEECTTSCEE-EEET-TTTEEEEEE
T ss_pred -CCCEEEECCccccccccccccccccCCCcEEEEECCCCCE-EEe-ecCCCCCccEEECCCCCEE-EEeC-CCCeEEEEE
Confidence 678999874 13589999988543 333 3678899999999988888 9994 467899999
Q ss_pred cC--CCC-cceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 248 MN--GDP-RHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 248 ~d--G~~-~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
++ |.. ...+++ ......|.+|++|. +++||+++ .+.|.+.+.+|.....
T Consensus 200 ~~~~g~~~~~~~~~-~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~g~~~~~ 251 (296)
T 3e5z_A 200 LNARGETEYQGVHF-TVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPDGDELGR 251 (296)
T ss_dssp ECSSSCEEEEEEEE-CCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTTSCEEEE
T ss_pred ECCCCcCcCCCeEe-eCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCCCCEEEE
Confidence 85 422 224444 44566899999995 56799998 6789999988765443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-10 Score=108.43 Aligned_cols=177 Identities=18% Similarity=0.140 Sum_probs=129.9
Q ss_pred EEEEeeCCCCCccEEe-cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~-~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~ 186 (395)
.|.+++.++ ...... ......+.++++|+. +.||+++...+.|.+++.++. ...+.. .....|.+|++|+ .
T Consensus 37 ~v~~~d~~~-~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~~~i~~~~-~ 109 (299)
T 2z2n_A 37 MISCINLDG-KITEYPLPTPDAKVMCLTISSD-GEVWFTENAANKIGRITKKGI----IKEYTLPNPDSAPYGITEGP-N 109 (299)
T ss_dssp EEEEECTTC-CEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTTSC----EEEEECSSTTCCEEEEEECT-T
T ss_pred cEEEEcCCC-CeEEecCCcccCceeeEEECCC-CCEEEeCCCCCeEEEECCCCc----EEEEeCCCcCCCceeeEECC-C
Confidence 477777763 222222 224578999999975 569999877889999998853 233332 2456899999997 6
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
++||+++...+.|.+++++|.............|++|++|+ +|.||+++.. ...|.+.+.+| .............|
T Consensus 110 g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g--~~~~~~~~~~~~~~ 185 (299)
T 2z2n_A 110 GDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGS-DNALWFTENQ-NNAIGRITESG--DITEFKIPTPASGP 185 (299)
T ss_dssp SCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSCEEEEETT-TTEEEEECTTC--CEEEEECSSTTCCE
T ss_pred CCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCC-CCEEEEEcCCC--cEEEeeCCCCCCcc
Confidence 79999998889999999977665444434567899999997 4689999854 57899999866 33332233445679
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
.+|++|.. ++||+++...+.|.+++.+|..
T Consensus 186 ~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~ 215 (299)
T 2z2n_A 186 VGITKGND-DALWFVEIIGNKIGRITTSGEI 215 (299)
T ss_dssp EEEEECTT-SSEEEEETTTTEEEEECTTCCE
T ss_pred eeEEECCC-CCEEEEccCCceEEEECCCCcE
Confidence 99999954 6799999888899999986653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-11 Score=115.07 Aligned_cols=166 Identities=15% Similarity=0.080 Sum_probs=120.0
Q ss_pred CCCCeEEEEEEcCCCEEEEEECC-----CCeEEEEEccCCCCCceEEEEeC-----CCCCcceEEEecCCCeEEEEeC--
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHG-----TEMISCCTFDGNNVGSKHNVITN-----GLITPDGLAIDWLTEKLYWTDS-- 194 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~-----~~~I~~~~~dg~~~~~~~~i~~~-----~~~~p~glAVD~~~~~LYwtd~-- 194 (395)
.+..+.++++|+. ++|||+|.. ..+|.+++++... ....+... ....|++|+||..++.+|++|.
T Consensus 65 ~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 65 TFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred ceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence 4678999999986 679999976 5799999987541 12333322 1246899999988899999998
Q ss_pred -CCCeEEEEECCCCceEEEEec-----------------------------CCCCceeEEEeCCCCeEEEEeeCCCCeEE
Q psy13629 195 -ETNKLEVSSLDGKKRKVLYWE-----------------------------DIDQPRAIALVPQDSIMFWTDWGEVPKIE 244 (395)
Q Consensus 195 -~~~~I~v~~ldg~~~~~l~~~-----------------------------~~~~P~~iavdp~~g~LYwtd~~~~~~I~ 244 (395)
..+.|.++++++.....++.. ....|+||+++|+.+.||+++.. ..+|+
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-~~~l~ 220 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-STSMY 220 (343)
T ss_dssp GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-CSEEE
T ss_pred CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-CCeEE
Confidence 788999999874433332211 01358999999998899999965 56899
Q ss_pred EEecC----CCCcceE-----EEEecCCcCceeEEEeccccEEEEeccceeeeeeecc-cccee
Q psy13629 245 RGAMN----GDPRHRK-----VIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY-DGYVR 298 (395)
Q Consensus 245 ~~~~d----G~~~~~~-----~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~-dG~~~ 298 (395)
+++.+ +.....+ ... .+...|+||++|. +++||++++..++|.+.+. +|...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~ 282 (343)
T 2qe8_A 221 RIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYK 282 (343)
T ss_dssp EEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred EEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEE
Confidence 98853 2111111 111 1234799999995 5799999999999999999 77543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-10 Score=109.71 Aligned_cols=177 Identities=14% Similarity=0.052 Sum_probs=128.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC----CCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG----LITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~----~~~p~glAVD~ 184 (395)
.|.++|... .+.....+....|.++++++.+ +||+++..++.|.+++.+... ....+.... ...|.+|+++
T Consensus 65 ~v~viD~~t-~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~--~~~~i~~g~~~~~~~~p~~i~~~- 139 (328)
T 3dsm_A 65 VIFAIDINT-FKEVGRITGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYE--ITGYIECPDMDMESGSTEQMVQY- 139 (328)
T ss_dssp EEEEEETTT-CCEEEEEECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTE--EEEEEECTTCCTTTCBCCCEEEE-
T ss_pred EEEEEECcc-cEEEEEcCCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCe--EEEEEEcCCccccCCCcceEEEE-
Confidence 678888876 3443333567899999998765 899999778999999988642 112222222 1279999994
Q ss_pred CCCeEEEEeCC-CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCC---------CCeEEEEecCCCCcc
Q psy13629 185 LTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE---------VPKIERGAMNGDPRH 254 (395)
Q Consensus 185 ~~~~LYwtd~~-~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~---------~~~I~~~~~dG~~~~ 254 (395)
+++||+++.+ .++|.+.|+........+ .....|.+++++| .|.+|+++++. ...|.+++.+.. .-
T Consensus 140 -~~~lyv~~~~~~~~v~viD~~t~~~~~~i-~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v 215 (328)
T 3dsm_A 140 -GKYVYVNCWSYQNRILKIDTETDKVVDEL-TIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TV 215 (328)
T ss_dssp -TTEEEEEECTTCCEEEEEETTTTEEEEEE-ECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EE
T ss_pred -CCEEEEEcCCCCCEEEEEECCCCeEEEEE-EcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCC-eE
Confidence 8999999984 889999999876555444 3456899999998 56799998663 368999998752 21
Q ss_pred eEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 255 RKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 255 ~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
.+.+.......|++|+++.++++||+++. .|.+++.+...
T Consensus 216 ~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~ 255 (328)
T 3dsm_A 216 EKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADR 255 (328)
T ss_dssp EEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSS
T ss_pred EEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCc
Confidence 22222111247999999999999999996 78888876544
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-11 Score=117.26 Aligned_cols=159 Identities=22% Similarity=0.147 Sum_probs=117.9
Q ss_pred ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-----eCCCCCcceEEEecC---CCeEEE
Q psy13629 120 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-----TNGLITPDGLAIDWL---TEKLYW 191 (395)
Q Consensus 120 ~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-----~~~~~~p~glAVD~~---~~~LYw 191 (395)
+.+.+...+..|.+|++++++ +||+++.. ++|++++.+| . +.+. ..+...|.|||+++. ++.||+
T Consensus 20 ~~~~va~~l~~P~~ia~~pdG-~l~V~e~~-g~I~~~d~~G----~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv 92 (354)
T 3a9g_A 20 KISEVASDLEVPWSIAPLGGG-RYLVTERP-GRLVLISPSG----K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYL 92 (354)
T ss_dssp EEEEEECSCSCEEEEEEEETT-EEEEEETT-TEEEEECSSC----E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred EEEEEeCCCCCCeEEEEcCCC-eEEEEeCC-CEEEEEeCCC----c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEE
Confidence 455667778999999999864 69999965 8999996554 2 2222 234567999999997 799999
Q ss_pred EeCC---C----CeEEEEECCCC-----ceEEEEe----cCCCCceeEEEeCCCCeEEEEeeCC-------------CCe
Q psy13629 192 TDSE---T----NKLEVSSLDGK-----KRKVLYW----EDIDQPRAIALVPQDSIMFWTDWGE-------------VPK 242 (395)
Q Consensus 192 td~~---~----~~I~v~~ldg~-----~~~~l~~----~~~~~P~~iavdp~~g~LYwtd~~~-------------~~~ 242 (395)
++.. . ++|.++++++. ..++++. ...+.|++|+++| .|+||+++ +. ..+
T Consensus 93 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~-G~~~~~~~~~d~~~~~G~ 170 (354)
T 3a9g_A 93 YASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITT-GDAADPRLAQDLSSLAGK 170 (354)
T ss_dssp EEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEEC-CCTTCGGGGTCTTCCSSE
T ss_pred EEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEE-CCCCCCccccCCCCCCeE
Confidence 9863 3 68999998876 2344432 2356799999999 56899997 31 258
Q ss_pred EEEEecCCCCc-----ceEEEEecCCcCceeEEEeccccEEEEeccceee
Q psy13629 243 IERGAMNGDPR-----HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287 (395)
Q Consensus 243 I~~~~~dG~~~-----~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~ 287 (395)
|.|++.||..- ....++...+..|+||++|..+++||++|...+.
T Consensus 171 I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~ 220 (354)
T 3a9g_A 171 ILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVG 220 (354)
T ss_dssp EEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSS
T ss_pred EEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCC
Confidence 99999999310 0223455677899999999878999999987654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=5e-11 Score=116.02 Aligned_cols=161 Identities=18% Similarity=0.142 Sum_probs=118.2
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-----eCCCCCcceEEEecC---CCeEE
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-----TNGLITPDGLAIDWL---TEKLY 190 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-----~~~~~~p~glAVD~~---~~~LY 190 (395)
.+.+.++..+..|.+|+++++++ ||+++.. ++|++++ +|. .+.+. ..+...|.|||+++. ++.||
T Consensus 21 ~~~~~va~~l~~P~~ia~~pdG~-l~V~e~~-g~I~~i~-~g~----~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lY 93 (352)
T 2ism_A 21 LRVEEVVGGLEVPWALAFLPDGG-MLIAERP-GRIRLFR-EGR----LSTYAELSVYHRGESGLLGLALHPRFPQEPYVY 93 (352)
T ss_dssp CCEEEEECCCSCEEEEEECTTSC-EEEEETT-TEEEEEE-TTE----EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred cEEEEEECCCCCceEEEEcCCCe-EEEEeCC-CeEEEEE-CCC----ccEeecceEeecCCCCceeEEECCCCCCCCEEE
Confidence 34566777889999999998765 9999965 8999998 653 22222 234678999999997 78999
Q ss_pred EEeCCC-----CeEEEEECCCC---ceEEEEe------cCCCCceeEEEeCCCCeEEEEeeC------------CCCeEE
Q psy13629 191 WTDSET-----NKLEVSSLDGK---KRKVLYW------EDIDQPRAIALVPQDSIMFWTDWG------------EVPKIE 244 (395)
Q Consensus 191 wtd~~~-----~~I~v~~ldg~---~~~~l~~------~~~~~P~~iavdp~~g~LYwtd~~------------~~~~I~ 244 (395)
+++... ++|.++++++. ..++++. ...+.|.+|+++| .|+||+++.. ...+|.
T Consensus 94 v~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ 172 (352)
T 2ism_A 94 AYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKIL 172 (352)
T ss_dssp EEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEE
T ss_pred EEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEE
Confidence 999754 78999999864 2334442 2246799999999 5699999732 125899
Q ss_pred EEecCCCCc----------ceEEEEecCCcCceeEEEeccccEEEEeccceee
Q psy13629 245 RGAMNGDPR----------HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287 (395)
Q Consensus 245 ~~~~dG~~~----------~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~ 287 (395)
|++.+|..- ....++...+..|+||++|..+++||++|...+.
T Consensus 173 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~ 225 (352)
T 2ism_A 173 RLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSG 225 (352)
T ss_dssp EECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC--
T ss_pred EEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCC
Confidence 999998210 1223445567889999999878999999987766
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-10 Score=110.01 Aligned_cols=179 Identities=18% Similarity=0.243 Sum_probs=128.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC----CCCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN----GLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~----~~~~p~glAVD~ 184 (395)
.|.+++.++ ....+......+.++++|+.++ ||+++...+.|.+++.+|. ...+... .+..|+++++|+
T Consensus 68 ~i~~~~~~g--~~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~g~----~~~~~~~~~~~~~~~~~~i~~d~ 140 (305)
T 3dr2_A 68 RVLGWREDG--TVDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDADGQ----AHLLVGRYAGKRLNSPNDLIVAR 140 (305)
T ss_dssp EEEEEETTS--CEEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC----EEEEECEETTEECSCCCCEEECT
T ss_pred EEEEEeCCC--CEEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECCCCC----EEEEEeccCCCccCCCCCEEECC
Confidence 567777654 3445555667899999998765 8888877889999998864 2333221 246799999997
Q ss_pred CCCeEEEEeC-----------------CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCC----CCeE
Q psy13629 185 LTEKLYWTDS-----------------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE----VPKI 243 (395)
Q Consensus 185 ~~~~LYwtd~-----------------~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~----~~~I 243 (395)
.++||+||. ..+.|++++.++...+.+. .+..|++++++|+.+.|||++... ..+|
T Consensus 141 -dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i 217 (305)
T 3dr2_A 141 -DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEI 217 (305)
T ss_dssp -TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEE
T ss_pred -CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEE
Confidence 778999874 1357899998644444443 677899999999999999999542 3689
Q ss_pred EEEecCCCC-cceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 244 ERGAMNGDP-RHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 244 ~~~~~dG~~-~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
.+.++++.. .+.+.+.......|.||++|. +++||+++. +.|.+++.+|.....
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~~~--~gv~~~~~~g~~~~~ 272 (305)
T 3dr2_A 218 TAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSSSG--TGVCVFDSDGQLLGH 272 (305)
T ss_dssp EEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEECCS--SEEEEECTTSCEEEE
T ss_pred EEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEecC--CcEEEECCCCCEEEE
Confidence 999987621 233445444456799999995 456888873 458888888765443
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-09 Score=104.18 Aligned_cols=183 Identities=10% Similarity=0.022 Sum_probs=136.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCC--------CcceE
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLI--------TPDGL 180 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~--------~p~gl 180 (395)
.|.++++.. .+.....+....+.++++++.++.+|+++..++.|..++.+... ....+...... .|.++
T Consensus 70 ~v~~~d~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 146 (353)
T 3vgz_A 70 VVYRLDPVT-LEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGE--VKGRLVLDDRKRTEEVRPLQPREL 146 (353)
T ss_dssp EEEEECTTT-CCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCC--EEEEEESCCCCCCSSCCCCEEEEE
T ss_pred cEEEEcCCC-CeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCe--eEEEEecCCCccccccCCCCCceE
Confidence 478888766 44444444456689999999999999999888999999987652 22333332222 27899
Q ss_pred EEecCCCeEEEEe-CCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEE
Q psy13629 181 AIDWLTEKLYWTD-SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIV 259 (395)
Q Consensus 181 AVD~~~~~LYwtd-~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv 259 (395)
++++.++.+|+++ ...++|.+.++++......+......|.+++++|++++||+++. ...|...++.. ......+
T Consensus 147 ~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~i~~~d~~~--~~~~~~~ 222 (353)
T 3vgz_A 147 VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA--DGELITIDTAD--NKILSRK 222 (353)
T ss_dssp EEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT--TSEEEEEETTT--TEEEEEE
T ss_pred EECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC--CCeEEEEECCC--CeEEEEE
Confidence 9999999999999 45788999999877766666335567999999999999999983 46788888865 2222222
Q ss_pred ec----CCcCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 260 DS----TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 260 ~~----~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
.. ....|.++++++++++||+++...+.|..++......
T Consensus 223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 223 KLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp ECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred EcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 22 2346888999999999999998889999999855443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.9e-10 Score=108.98 Aligned_cols=179 Identities=13% Similarity=0.045 Sum_probs=119.4
Q ss_pred EEEEeeCCCC-CccE-EecCC------CCCeEEEEEEcC---CCEEEEEECC--CCeE--EEEEccCCCCCceEEEEeCC
Q psy13629 109 DIRIANLSRP-LKPV-TIIKD------LEEGAAIDYYYK---KSMVCWTDHG--TEMI--SCCTFDGNNVGSKHNVITNG 173 (395)
Q Consensus 109 ~I~~~~l~~~-~~~~-~~~~~------~~~~~gl~~d~~---~~~lywsd~~--~~~I--~~~~~dg~~~~~~~~i~~~~ 173 (395)
.|.+++++.. .+.. +...+ .-+|.||++... ..+||+.|.. ..+| ++++.++........+-...
T Consensus 84 ~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~ 163 (355)
T 3sre_A 84 KILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL 163 (355)
T ss_dssp EEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTT
T ss_pred eEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCC
Confidence 3777887631 2222 22222 238999999763 3479999876 3454 44555443111111222246
Q ss_pred CCCcceEEEecCCCeEEEEeC-----------------CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 174 LITPDGLAIDWLTEKLYWTDS-----------------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 174 ~~~p~glAVD~~~~~LYwtd~-----------------~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
+.+|+++++|. .+.+|+++. ..++|++++.. ..+++. .++..|+||+++|+++.||++|
T Consensus 164 ~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~-~~l~~pNGia~spDg~~lYvad 239 (355)
T 3sre_A 164 LPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVA-EGFDFANGINISPDGKYVYIAE 239 (355)
T ss_dssp CSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEE-EEESSEEEEEECTTSSEEEEEE
T ss_pred CCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEee-cCCcccCcceECCCCCEEEEEe
Confidence 78999999997 678887763 24678888873 344444 7789999999999999999999
Q ss_pred eCCCCeEEEEecC--CCCcceEEEEecCCcCceeEEEeccccEEEEec-cceeeeeeeccc
Q psy13629 237 WGEVPKIERGAMN--GDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID-GRLTFIEVMDYD 294 (395)
Q Consensus 237 ~~~~~~I~~~~~d--G~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD-~~~~~I~~~~~d 294 (395)
.. ..+|.+.+++ |..++++++ .. -..|.||++|..+++||++. ++..+|.+.+.+
T Consensus 240 t~-~~~I~~~~~~~~g~l~~~~~~-~~-~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 240 LL-AHKIHVYEKHANWTLTPLRVL-SF-DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp GG-GTEEEEEEECTTSCEEEEEEE-EC-SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CC-CCeEEEEEECCCCcEecCEEE-eC-CCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 54 6889999986 433344444 32 46899999995457899965 566677766666
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-10 Score=108.09 Aligned_cols=154 Identities=16% Similarity=0.003 Sum_probs=113.6
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCC--CeEEEEECCC
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET--NKLEVSSLDG 206 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~--~~I~v~~ldg 206 (395)
..+.++++|+. +.|||+|..+++|++++.++. ...... ....|.||++|.. ++||++|... .+|.+++...
T Consensus 32 ~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g~----~~~~~~-~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPD-GTIFVTNHEVGEIVSITPDGN----QQIHAT-VEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTT-SCEEEEETTTTEEEEECTTCC----EEEEEE-CSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCC-CCEEEEeCCCCeEEEECCCCc----eEEEEe-CCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCC
Confidence 57899999985 459999999999999999874 222222 2357999999974 6699999654 3588887655
Q ss_pred CceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEE-E---------ecCCcCceeEEEeccc
Q psy13629 207 KKRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVI-V---------DSTIFWPNGIAIDFNN 275 (395)
Q Consensus 207 ~~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~l-v---------~~~~~~P~glalD~~~ 275 (395)
...+.+.. .....|.++++.+ .+.+|++|.. ..+|++++.++ ...++. . ...+..|+|| +.++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~-~g~i~~~d~~~--~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS-DTQYLTADSY-RGAIWLIDVVQ--PSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS-SSEEEEEETT-TTEEEEEETTT--TEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred CeEEEEEeCCCccccCcccccC-CCcEEEEECC-CCeEEEEeCCC--CcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 44444443 3456789999864 6789999954 57899999875 222222 1 1245689998 5558
Q ss_pred cEEEEeccceeeeeeecccc
Q psy13629 276 RLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 276 ~rLYwaD~~~~~I~~~~~dG 295 (395)
++|||+|...++|.++++++
T Consensus 179 ~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp TEEEEEETTTTEEEEEEBCT
T ss_pred CEEEEEeCCCCEEEEEEeCC
Confidence 89999999999999999885
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8.4e-10 Score=104.75 Aligned_cols=163 Identities=11% Similarity=0.089 Sum_probs=122.9
Q ss_pred EecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCC----Ce
Q psy13629 123 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET----NK 198 (395)
Q Consensus 123 ~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~----~~ 198 (395)
.+......+.+++|++.+ +|||++...+.|++++.++. ....+.......|.+|++|+ .++||+++... +.
T Consensus 39 ~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETK---EIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp EEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTC---CEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCE
T ss_pred EEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCC---cEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCce
Confidence 344455678999999765 49999988899999998865 33334434456799999997 56899998765 68
Q ss_pred EEEEECCCCceEEEEe--cCCCCceeEEEeCCCCeEEEEeeCC-----CCeEEEEecCCCCcceEEEEecCCcCceeEEE
Q psy13629 199 LEVSSLDGKKRKVLYW--EDIDQPRAIALVPQDSIMFWTDWGE-----VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAI 271 (395)
Q Consensus 199 I~v~~ldg~~~~~l~~--~~~~~P~~iavdp~~g~LYwtd~~~-----~~~I~~~~~dG~~~~~~~lv~~~~~~P~glal 271 (395)
|.++++++.....++. .....|+++++|| +|.+|+++... ...|++++.++ ...+.+. .....|+++++
T Consensus 114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~--~~~~~~~-~~~~~~~~i~~ 189 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPII-QNISVANGIAL 189 (333)
T ss_dssp EEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS--CCEEEEE-EEESSEEEEEE
T ss_pred EEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCC--CEEEEee-cCCCcccceEE
Confidence 9999999887765543 2346799999998 56899988531 36799998876 3333332 34457999999
Q ss_pred eccccEEEEeccceeeeeeeccc
Q psy13629 272 DFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 272 D~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+.+++.||+++...+.|.+.+++
T Consensus 190 ~~dg~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 190 STDEKVLWVTETTANRLHRIALE 212 (333)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCeEEEEEec
Confidence 98888899999888899998884
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-09 Score=101.56 Aligned_cols=178 Identities=14% Similarity=0.035 Sum_probs=127.2
Q ss_pred EEEEEeeCCCCCccEEe--cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTI--IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~--~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
+.|+++|+.. .+.... .+....+.|++++ +++||++++.++.+.+++.+... ...++.. + .|.|..+.+.
T Consensus 44 s~v~~iD~~t-g~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~--v~~~i~~-g--~~~g~glt~D 115 (266)
T 2iwa_A 44 SSVRQVALQT-GKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS--NIKNFTH-Q--MKDGWGLATD 115 (266)
T ss_dssp CEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE--EEEEEEC-C--SSSCCEEEEC
T ss_pred CEEEEEECCC-CCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc--EEEEEEC-C--CCCeEEEEEC
Confidence 4688899876 343333 3344455677776 67999999999999999988542 2223322 2 4667777777
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEEEec-----CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVLYWE-----DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~-----~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
++.||.++ +.++|.+.|..+.....-+.- ....|+++... +|+||.+.|. ...|.+++........++-+.
T Consensus 116 g~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~-~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 116 GKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQ-TDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp SSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-SSEEEEEETTTCCEEEEEECH
T ss_pred CCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCC-CCeEEEEECCCCcEEEEEECC
Confidence 89999999 588999999988654433321 23468899887 6799999977 679999999752222223232
Q ss_pred c-----------CCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 261 S-----------TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 261 ~-----------~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
. ....||||++|..+++||++....++++.+++....
T Consensus 192 g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 192 NLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp HHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred CcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 1 113689999999999999999999999999876543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-08 Score=97.17 Aligned_cols=182 Identities=13% Similarity=0.006 Sum_probs=131.8
Q ss_pred EEEEeeCCCCCccEEecC-CCC--------CeEEEEEEcCCCEEEEEEC-CCCeEEEEEccCCCCCceEEEEeCCCCCcc
Q psy13629 109 DIRIANLSRPLKPVTIIK-DLE--------EGAAIDYYYKKSMVCWTDH-GTEMISCCTFDGNNVGSKHNVITNGLITPD 178 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~-~~~--------~~~gl~~d~~~~~lywsd~-~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~ 178 (395)
.|.++++........+.. ... .+.++++++.++.+|+++. .++.|+.++.+.. .....+......|.
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~ 188 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI---KLKTAIQNTGKMST 188 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT---EEEEEECCCCTTCC
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC---ceEEEecCCCCccc
Confidence 678888866332222222 111 2789999999999999984 4778999998864 22233332345699
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEec----CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcc
Q psy13629 179 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE----DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH 254 (395)
Q Consensus 179 glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~----~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~ 254 (395)
++++++.++.||+++. .+.|.+.++........+.. ....|.+++++|.+++||+++.. ...|...+.+. ..
T Consensus 189 ~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~v~~~d~~~--~~ 264 (353)
T 3vgz_A 189 GLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-AAEVLVVDTRN--GN 264 (353)
T ss_dssp CCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-SSEEEEEETTT--CC
T ss_pred eEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-CCEEEEEECCC--Cc
Confidence 9999999999999986 68999999987665544433 24467889999999999999844 67899999865 22
Q ss_pred eEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 255 RKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 255 ~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
....+. ...|.+++++.++++||+++...+.|..++.+.....
T Consensus 265 ~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 265 ILAKVA--APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp EEEEEE--CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEE--cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 222222 3458899999999999999988899999998654433
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-09 Score=99.14 Aligned_cols=183 Identities=10% Similarity=-0.060 Sum_probs=130.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcce-EEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG-LAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~g-lAVD~~~~ 187 (395)
.|.++++........+......+ +++|+++++.||+++...+.|++++++... ...........|.. +++++.++
T Consensus 21 ~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~s~dg~ 96 (331)
T 3u4y_A 21 RISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP---PKVVAIQEGQSSMADVDITPDDQ 96 (331)
T ss_dssp EEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS---CEEEEEEECSSCCCCEEECTTSS
T ss_pred eEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc---eeEEecccCCCCccceEECCCCC
Confidence 78888887633333333345556 999999999999999888999999998653 21222223456777 99999888
Q ss_pred eEEEEeCCCC--eEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce---EEEEecC
Q psy13629 188 KLYWTDSETN--KLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR---KVIVDST 262 (395)
Q Consensus 188 ~LYwtd~~~~--~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~---~~lv~~~ 262 (395)
.||.++...+ .|.+.+++.......+ .....|++++++|++++||+++......|...+++...... ...+ ..
T Consensus 97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~ 174 (331)
T 3u4y_A 97 FAVTVTGLNHPFNMQSYSFLKNKFISTI-PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SG 174 (331)
T ss_dssp EEEECCCSSSSCEEEEEETTTTEEEEEE-ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CS
T ss_pred EEEEecCCCCcccEEEEECCCCCeEEEE-ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cC
Confidence 9994433334 9999999877665555 45677999999999989999996633326666655311211 1111 22
Q ss_pred CcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
...|.++++++++++||+++...+.|...+++...
T Consensus 175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 34699999999988999999888999998876443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.4e-10 Score=108.64 Aligned_cols=185 Identities=16% Similarity=0.123 Sum_probs=124.7
Q ss_pred EEEEeeCCCCCccE----EecCCCCCeEEEEEEcC---CCEEEEEECCC-----CeEEEEEccCCCCCceEEEEe-----
Q psy13629 109 DIRIANLSRPLKPV----TIIKDLEEGAAIDYYYK---KSMVCWTDHGT-----EMISCCTFDGNNVGSKHNVIT----- 171 (395)
Q Consensus 109 ~I~~~~l~~~~~~~----~~~~~~~~~~gl~~d~~---~~~lywsd~~~-----~~I~~~~~dg~~~~~~~~i~~----- 171 (395)
.|++++ ++..... ........+.||+++++ ++.||+++... ++|.|+..++..+...++++.
T Consensus 52 ~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~ 130 (352)
T 2ism_A 52 RIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPAR 130 (352)
T ss_dssp EEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred eEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCC
Confidence 567776 4421111 11234678999999998 78999998654 789999998643222333332
Q ss_pred -CCCCCcceEEEecCCCeEEEEeCC-------------CCeEEEEECCCCc------------eEEEEecCCCCceeEEE
Q psy13629 172 -NGLITPDGLAIDWLTEKLYWTDSE-------------TNKLEVSSLDGKK------------RKVLYWEDIDQPRAIAL 225 (395)
Q Consensus 172 -~~~~~p~glAVD~~~~~LYwtd~~-------------~~~I~v~~ldg~~------------~~~l~~~~~~~P~~iav 225 (395)
.....|.+|++++ .++||+++.. .++|.+++.+|+. ...+....+.+|++|++
T Consensus 131 ~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~ 209 (352)
T 2ism_A 131 PHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAW 209 (352)
T ss_dssp TTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEE
T ss_pred CCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEE
Confidence 2345789999998 5699999742 3689999999831 22334467899999999
Q ss_pred eCCCCeEEEEeeCCCC-------eEEEEecCCCC-------------cceEEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 226 VPQDSIMFWTDWGEVP-------KIERGAMNGDP-------------RHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 226 dp~~g~LYwtd~~~~~-------~I~~~~~dG~~-------------~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
||..|.||++|.+... .|.++...+.- .......-.....|.||++. ++.||+++...
T Consensus 210 d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~--~G~l~v~~~~~ 287 (352)
T 2ism_A 210 HPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFF--RGDLYVAGLRG 287 (352)
T ss_dssp CTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEE--TTEEEEEETTT
T ss_pred ECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEE--CCEEEEEECCC
Confidence 9989999999976332 46665432200 00111111222368999993 78999999999
Q ss_pred eeeeeeccccce
Q psy13629 286 TFIEVMDYDGYV 297 (395)
Q Consensus 286 ~~I~~~~~dG~~ 297 (395)
++|.++++++..
T Consensus 288 ~~v~~v~~~~~~ 299 (352)
T 2ism_A 288 QALLRLVLEGER 299 (352)
T ss_dssp TEEEEEEEEEET
T ss_pred CEEEEEEECCCC
Confidence 999999987654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-09 Score=99.65 Aligned_cols=163 Identities=9% Similarity=0.079 Sum_probs=114.3
Q ss_pred CeEEEEEEcCCCEEEEEECCCCeEEEEEccC-CCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC--
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDG-NNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG-- 206 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg-~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg-- 206 (395)
.+.+++|++.++ +|+++...+.|..++++. ..+.....+.......|.++++++.++.||+++...+.|.+++++.
T Consensus 142 ~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~ 220 (347)
T 3hfq_A 142 HIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT 220 (347)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred CceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 478899999988 999999899999999883 2111111222333457999999998888999998889999998874
Q ss_pred CceEE--EEecC------CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceE-EEEecCCcCceeEEEeccccE
Q psy13629 207 KKRKV--LYWED------IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRK-VIVDSTIFWPNGIAIDFNNRL 277 (395)
Q Consensus 207 ~~~~~--l~~~~------~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~-~lv~~~~~~P~glalD~~~~r 277 (395)
..... .+... ...|.+++++|+.++||+++.+ ...|...+++....... ..+......|.++++++++++
T Consensus 221 g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~ 299 (347)
T 3hfq_A 221 GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAF 299 (347)
T ss_dssp TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET-TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSE
T ss_pred CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC-CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCE
Confidence 22211 11111 1458999999999999999855 56777777763101111 122223457999999999999
Q ss_pred EEEeccceeeeeeeccc
Q psy13629 278 LYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 278 LYwaD~~~~~I~~~~~d 294 (395)
||+++...+.|...+.|
T Consensus 300 l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 300 VVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEETTTTEEEEEEEC
T ss_pred EEEEEcCCCcEEEEEEe
Confidence 99999877777666443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.1e-10 Score=110.48 Aligned_cols=165 Identities=12% Similarity=0.058 Sum_probs=117.4
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCC---ceEEEEeCCCCCcceEEEecC---CCeEEEE
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG---SKHNVITNGLITPDGLAIDWL---TEKLYWT 192 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~---~~~~i~~~~~~~p~glAVD~~---~~~LYwt 192 (395)
.+.+.++..+..|.+|+++++++.||+++. .++|++++.+|.... ....+...+...+.|||+++. ++.||++
T Consensus 8 ~~~~~va~~l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 8 VNVEVLQDKLDHPWALAFLPDNHGMLITLR-GGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp SEEEEEEEEESSEEEEEECSTTCCEEEEET-TTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred cEEEEEECCCCCcEEEEEcCCCCEEEEEeC-CceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 456667778899999999997765999995 589999987663100 000111223456899999986 8999999
Q ss_pred eCC-------CCeEEEEECCCC-----ceEEEEec------CCCCceeEEEeCCCCeEEEEeeCC------------CCe
Q psy13629 193 DSE-------TNKLEVSSLDGK-----KRKVLYWE------DIDQPRAIALVPQDSIMFWTDWGE------------VPK 242 (395)
Q Consensus 193 d~~-------~~~I~v~~ldg~-----~~~~l~~~------~~~~P~~iavdp~~g~LYwtd~~~------------~~~ 242 (395)
+.. ..+|.++++++. ..++++.. ..+.+.+|+++| .|+||++.... ..+
T Consensus 87 ~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~ 165 (353)
T 2g8s_A 87 YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGK 165 (353)
T ss_dssp EEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTE
T ss_pred EeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeE
Confidence 854 458999988754 34455432 245689999999 56999997221 258
Q ss_pred EEEEecCCCCc----------ceEEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 243 IERGAMNGDPR----------HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 243 I~~~~~dG~~~----------~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
|.|++.||..- ....++...+..|.||++|..+++||++|...
T Consensus 166 I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~ 218 (353)
T 2g8s_A 166 LVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGP 218 (353)
T ss_dssp EEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECS
T ss_pred EEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCC
Confidence 99999998310 12334556678899999998789999999764
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-09 Score=100.54 Aligned_cols=182 Identities=19% Similarity=0.148 Sum_probs=127.5
Q ss_pred EEEEeeCCCCCccEEe-cCCCCCeEEEEEEcCCCEEEEEECCC----CeEEEEEccCCCCCceEEEEe--CCCCCcceEE
Q psy13629 109 DIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGT----EMISCCTFDGNNVGSKHNVIT--NGLITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~-~~~~~~~~gl~~d~~~~~lywsd~~~----~~I~~~~~dg~~~~~~~~i~~--~~~~~p~glA 181 (395)
.|.+++.++ .....+ ......+.++++++.+ ++|+++... +.|++++.++.. ...++. .....|.+++
T Consensus 67 ~i~~~d~~~-~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~i~ 141 (333)
T 2dg1_A 67 NIFKINPET-KEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDN---LQDIIEDLSTAYCIDDMV 141 (333)
T ss_dssp EEEEECTTT-CCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCS---CEEEECSSSSCCCEEEEE
T ss_pred EEEEEeCCC-CcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCE---EEEEEccCccCCcccceE
Confidence 678888776 333333 2455779999999875 578887655 689999988752 232332 2335799999
Q ss_pred EecCCCeEEEEeCC------CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce
Q psy13629 182 IDWLTEKLYWTDSE------TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR 255 (395)
Q Consensus 182 VD~~~~~LYwtd~~------~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~ 255 (395)
+|+ .+++|+++.. ...|.+++.++.....+. .....|++++++|+++.||+++.. ...|.+.+++......
T Consensus 142 ~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~-~~~i~~~d~~~~g~~~ 218 (333)
T 2dg1_A 142 FDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETT-ANRLHRIALEDDGVTI 218 (333)
T ss_dssp ECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGG-GTEEEEEEECTTSSSE
T ss_pred ECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCC-CCeEEEEEecCCCcCc
Confidence 998 6789999864 468999998876555544 445679999999988889999844 5689999984210222
Q ss_pred E-----EEEe-cCCcCceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 256 K-----VIVD-STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 256 ~-----~lv~-~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
. .... .....|.+|++|. +++||+++...+.|.+.+.+|....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~g~~~~ 267 (333)
T 2dg1_A 219 QPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKRGYPIG 267 (333)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTTSCEEE
T ss_pred ccccceEEEecCCCCCCCceEECC-CCCEEEEEcCCCEEEEECCCCCEEE
Confidence 1 1211 1124799999995 4679999877788999988775433
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.4e-09 Score=97.27 Aligned_cols=180 Identities=13% Similarity=0.067 Sum_probs=130.7
Q ss_pred EEEEeeCCCCCcc-EEecCCCCCeEE-EEEEcCCCEEEEEECCCC--eEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRPLKP-VTIIKDLEEGAA-IDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~-~~~~~~~~~~~g-l~~d~~~~~lywsd~~~~--~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.|.++++.. ... .........+.. +++++.++.||.++...+ .|..++++.. .....+ .....|.++++++
T Consensus 63 ~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~---~~~~~~-~~~~~~~~~~~sp 137 (331)
T 3u4y_A 63 TLVQIETQL-EPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN---KFISTI-PIPYDAVGIAISP 137 (331)
T ss_dssp EEEEEECSS-SSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT---EEEEEE-ECCTTEEEEEECT
T ss_pred eEEEEECCC-CceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC---CeEEEE-ECCCCccceEECC
Confidence 678888876 333 444444556677 999999999995443334 8999999865 222222 2345789999999
Q ss_pred CCCeEEEEeCCCCe-EEEEECCCCceE-----EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcc---e
Q psy13629 185 LTEKLYWTDSETNK-LEVSSLDGKKRK-----VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH---R 255 (395)
Q Consensus 185 ~~~~LYwtd~~~~~-I~v~~ldg~~~~-----~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~---~ 255 (395)
.++.||+++...+. |.+++++..... ..+ .....|++++++|++++||+++.. ...|...+++.. .. .
T Consensus 138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~d~~~~-~~~~~~ 214 (331)
T 3u4y_A 138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLI-GNSIGILETQNP-ENITLL 214 (331)
T ss_dssp TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETT-TTEEEEEECSST-TSCEEE
T ss_pred CCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCC-CCeEEEEECCCC-ccccee
Confidence 88889999988777 888887754332 222 445679999999999899999854 678999998752 22 2
Q ss_pred EEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 256 KVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 256 ~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
..+ . .-..|.+++++++++.||+++...+.|..+++.....
T Consensus 215 ~~~-~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 215 NAV-G-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEE-E-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred eec-c-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 222 2 2357999999999999999999889999998865443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-09 Score=105.18 Aligned_cols=172 Identities=10% Similarity=0.080 Sum_probs=119.0
Q ss_pred EEEEeeCCCCCccE-EecC-----CCCCeEEEEEEcCCCEEEEEEC---CCCeEEEEEccCCCCCceEEEEeC-------
Q psy13629 109 DIRIANLSRPLKPV-TIIK-----DLEEGAAIDYYYKKSMVCWTDH---GTEMISCCTFDGNNVGSKHNVITN------- 172 (395)
Q Consensus 109 ~I~~~~l~~~~~~~-~~~~-----~~~~~~gl~~d~~~~~lywsd~---~~~~I~~~~~dg~~~~~~~~i~~~------- 172 (395)
.|.+++++...... ...+ ....+.++++|+.++.+|++|. ..+.|.+++++... ...+...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~---~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL---AARVLQGYPGIAPE 170 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC---EEEECTTCTTTSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC---EEEEecCCCccccc
Confidence 56677776422121 1121 1235689999998899999998 67899999987432 1111110
Q ss_pred ----------------------CCCCcceEEEecCCCeEEEEeCCCCeEEEEECC----CCc--e-----EEEEecCCCC
Q psy13629 173 ----------------------GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD----GKK--R-----KVLYWEDIDQ 219 (395)
Q Consensus 173 ----------------------~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld----g~~--~-----~~l~~~~~~~ 219 (395)
....|+|||+++.++.||+++....+|++++.+ +.. . .... .....
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~ 249 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-SEKPI 249 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCS
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCC
Confidence 013579999999888999999888899998853 110 0 0111 22347
Q ss_pred ceeEEEeCCCCeEEEEeeCCCCeEEEEec-CCCCcceEEEEec-CCcCceeEEEeccccEEEEeccceeeeee
Q psy13629 220 PRAIALVPQDSIMFWTDWGEVPKIERGAM-NGDPRHRKVIVDS-TIFWPNGIAIDFNNRLLYWIDGRLTFIEV 290 (395)
Q Consensus 220 P~~iavdp~~g~LYwtd~~~~~~I~~~~~-dG~~~~~~~lv~~-~~~~P~glalD~~~~rLYwaD~~~~~I~~ 290 (395)
|.|+++|+. |.||++++. ..+|.+.+. +| . ...++.. .+.+|.+++++. +++||+++...+++..
T Consensus 250 pdgia~d~~-G~l~va~~~-~~~V~~~d~~~G--~-~~~~~~~~~~~~p~~va~~~-~g~l~v~~~~~~~~~~ 316 (343)
T 2qe8_A 250 CDGISIDKD-HNIYVGDLA-HSAIGVITSADR--A-YKLLVTDEKLSWTDSFNFGS-DGYLYFDCNQLHHSAP 316 (343)
T ss_dssp CSCEEECTT-CCEEEEEGG-GTEEEEEETTTT--E-EEEEEECGGGSCEEEEEECT-TSCEEEEECCGGGSGG
T ss_pred CceEEECCC-CCEEEEccC-CCeEEEEECCCC--C-EEEEEECCceecCCeeEECC-CCcEEEEeCccccccc
Confidence 999999985 899999977 678999999 77 3 3444443 477999999995 4789999987666543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=8.8e-09 Score=96.11 Aligned_cols=160 Identities=12% Similarity=0.001 Sum_probs=120.8
Q ss_pred CeEEEEEEcCCCEEEEEEC--CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCC
Q psy13629 130 EGAAIDYYYKKSMVCWTDH--GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 207 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~--~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~ 207 (395)
.+.||+|+++ +.||.+.. ..+.|.++++.... ....+.......++|++++ +++||+++...+.+.++|.+..
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~ 96 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGK--VENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL 96 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCC--EEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTT
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCC--EEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCC
Confidence 4689999976 69999975 36899999998653 2233444444567788887 6899999999999999999865
Q ss_pred ceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec---CCcCceeEEEeccccEEEEeccc
Q psy13629 208 KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS---TIFWPNGIAIDFNNRLLYWIDGR 284 (395)
Q Consensus 208 ~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~---~~~~P~glalD~~~~rLYwaD~~ 284 (395)
....-+... .|.|..+.++.++||.++ + ..+|..++.+.....+++.+.. .+..||+|.+. +++||.+.+.
T Consensus 97 ~v~~~i~~g--~~~g~glt~Dg~~l~vs~-g-s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~ 170 (266)
T 2iwa_A 97 SNIKNFTHQ--MKDGWGLATDGKILYGSD-G-TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQ 170 (266)
T ss_dssp EEEEEEECC--SSSCCEEEECSSSEEEEC-S-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT
T ss_pred cEEEEEECC--CCCeEEEEECCCEEEEEC-C-CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCC
Confidence 544444333 567777888899999999 6 6799999998743445555553 24468999887 5799999999
Q ss_pred eeeeeeeccccceeee
Q psy13629 285 LTFIEVMDYDGYVRLV 300 (395)
Q Consensus 285 ~~~I~~~~~dG~~~~~ 300 (395)
.+.|.++|........
T Consensus 171 ~~~V~vID~~tg~V~~ 186 (266)
T 2iwa_A 171 TDCIARISAKDGTLLG 186 (266)
T ss_dssp SSEEEEEETTTCCEEE
T ss_pred CCeEEEEECCCCcEEE
Confidence 9999999986655443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-09 Score=100.26 Aligned_cols=178 Identities=17% Similarity=0.103 Sum_probs=123.6
Q ss_pred EEEEeeCCCCCccEEecC-----CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEE-EeC----CCCCcc
Q psy13629 109 DIRIANLSRPLKPVTIIK-----DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV-ITN----GLITPD 178 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~-----~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i-~~~----~~~~p~ 178 (395)
.|.+++... .+...+.. ....+.++++++.+++||+++.. +.|.+++.+|. ...+ ... ....|.
T Consensus 47 ~i~~~d~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~g~----~~~~~~~~~~~~~~~~~~ 120 (314)
T 1pjx_A 47 EILRIDLKT-GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLVVQTDGT----FEEIAKKDSEGRRMQGCN 120 (314)
T ss_dssp EEEEECTTT-CCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEEEETTSC----EEECCSBCTTSCBCBCCC
T ss_pred EEEEEeCCC-CcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-CCEEEEeCCCC----EEEEEeccCCCccccCCc
Confidence 567777654 33333322 23678999999876789999854 48999998842 2322 211 224699
Q ss_pred eEEEecCCCeEEEEeCCC---------------CeEEEEECCCCceEEEEecCCCCceeEEEe----CCCCeEEEEeeCC
Q psy13629 179 GLAIDWLTEKLYWTDSET---------------NKLEVSSLDGKKRKVLYWEDIDQPRAIALV----PQDSIMFWTDWGE 239 (395)
Q Consensus 179 glAVD~~~~~LYwtd~~~---------------~~I~v~~ldg~~~~~l~~~~~~~P~~iavd----p~~g~LYwtd~~~ 239 (395)
+|++|+ .++||+++... +.|.+++.+|+.. .+. .....|++++++ ++++.||+++..
T Consensus 121 ~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~- 196 (314)
T 1pjx_A 121 DCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI-QVD-TAFQFPNGIAVRHMNDGRPYQLIVAETP- 196 (314)
T ss_dssp EEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE-EEE-EEESSEEEEEEEECTTSCEEEEEEEETT-
T ss_pred CEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCCEE-Eec-cCCCCcceEEEecccCCCCCEEEEEECC-
Confidence 999998 67899999754 6899999885543 333 456779999999 987799999944
Q ss_pred CCeEEEEecC--CCCcceEEEEec--CC-cCceeEEEeccccEEEEeccceeeeeeeccc-cce
Q psy13629 240 VPKIERGAMN--GDPRHRKVIVDS--TI-FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD-GYV 297 (395)
Q Consensus 240 ~~~I~~~~~d--G~~~~~~~lv~~--~~-~~P~glalD~~~~rLYwaD~~~~~I~~~~~d-G~~ 297 (395)
..+|.+.+.+ |.....+.+... .. ..|.+|++|. +++||+++...+.|.+++.+ |..
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~ 259 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQP 259 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSC
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcE
Confidence 6789998876 311122233221 12 5799999995 56899999878899999987 543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-08 Score=95.14 Aligned_cols=180 Identities=15% Similarity=0.093 Sum_probs=138.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+++++.. .+..........+.+++|++.++.||++...++.|..+++... .....+.. ...+.++++++.++.
T Consensus 13 ~v~v~d~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~-~~~v~~~~~spdg~~ 87 (391)
T 1l0q_A 13 NISVIDVTS-NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPA-GSSPQGVAVSPDGKQ 87 (391)
T ss_dssp EEEEEETTT-TEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSSE
T ss_pred EEEEEECCC-CeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEEC-CCCccceEECCCCCE
Confidence 578888876 4444455566679999999999999999988899999998764 22222222 338999999999999
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
||++....+.|.+.++.+......+ .....+.+++++|.+++||++. .....|...++.. ......+.. -..|.+
T Consensus 88 l~~~~~~~~~v~v~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~-~~~~~v~~~d~~~--~~~~~~~~~-~~~~~~ 162 (391)
T 1l0q_A 88 VYVTNMASSTLSVIDTTSNTVAGTV-KTGKSPLGLALSPDGKKLYVTN-NGDKTVSVINTVT--KAVINTVSV-GRSPKG 162 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEEEE-TTTTEEEEEETTT--TEEEEEEEC-CSSEEE
T ss_pred EEEEECCCCEEEEEECCCCeEEEEE-eCCCCcceEEECCCCCEEEEEe-CCCCEEEEEECCC--CcEEEEEec-CCCcce
Confidence 9999988899999999987666555 3456799999999999999988 4467899999875 222222222 346899
Q ss_pred EEEeccccEEEEeccceeeeeeecccccee
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
+++++.+++||++....+.|...++.....
T Consensus 163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 192 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSV 192 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCeE
Confidence 999988999999988888888888765443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-09 Score=101.75 Aligned_cols=184 Identities=15% Similarity=0.124 Sum_probs=124.8
Q ss_pred EEEEeeCCCCCccEE----ecCCCCCeEEEEEEcC---CCEEEEEECC---C----CeEEEEEccCC--CCCceEEEEe-
Q psy13629 109 DIRIANLSRPLKPVT----IIKDLEEGAAIDYYYK---KSMVCWTDHG---T----EMISCCTFDGN--NVGSKHNVIT- 171 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~----~~~~~~~~~gl~~d~~---~~~lywsd~~---~----~~I~~~~~dg~--~~~~~~~i~~- 171 (395)
.|++++.++. .... .......+.||++++. ++.||+++.. . ++|.|+..++. .+...++++.
T Consensus 50 ~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~ 128 (354)
T 3a9g_A 50 RLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDG 128 (354)
T ss_dssp EEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred EEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEc
Confidence 5677765442 1111 1234577999999998 8899999853 3 68999998864 1212233322
Q ss_pred ---CCCCCcceEEEecCCCeEEEEeCC-------------CCeEEEEECCCC--------ceEEEEecCCCCceeEEEeC
Q psy13629 172 ---NGLITPDGLAIDWLTEKLYWTDSE-------------TNKLEVSSLDGK--------KRKVLYWEDIDQPRAIALVP 227 (395)
Q Consensus 172 ---~~~~~p~glAVD~~~~~LYwtd~~-------------~~~I~v~~ldg~--------~~~~l~~~~~~~P~~iavdp 227 (395)
.....+.+|++++ .++||+++.. .++|.+++.+|+ ..+ +....+.+|.||++||
T Consensus 129 ~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~-i~a~G~rnp~Gla~d~ 206 (354)
T 3a9g_A 129 IPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSP-IWSYGHRNPQGIDWHR 206 (354)
T ss_dssp EECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCC-EEEECCSCCCEEEECT
T ss_pred CCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCc-EEEEccCCcceEEEeC
Confidence 2345789999998 6789999742 368999999997 333 4447899999999999
Q ss_pred CCCeEEEEeeCC--CCeEEEEecCCCC-------------cceEEEEe-cCCcCceeEEE-------eccccEEEEeccc
Q psy13629 228 QDSIMFWTDWGE--VPKIERGAMNGDP-------------RHRKVIVD-STIFWPNGIAI-------DFNNRLLYWIDGR 284 (395)
Q Consensus 228 ~~g~LYwtd~~~--~~~I~~~~~dG~~-------------~~~~~lv~-~~~~~P~glal-------D~~~~rLYwaD~~ 284 (395)
..|.||++|.+. ...|.++...+.- .......- .....|.||++ + .+++||+++..
T Consensus 207 ~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~-~~G~l~v~~~~ 285 (354)
T 3a9g_A 207 ASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPG-LRGWLLIACLR 285 (354)
T ss_dssp TTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGG-GTTEEEEEETT
T ss_pred CCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcc-cCCcEEEEEcC
Confidence 899999999662 2345555432100 00111110 12236999999 4 56799999999
Q ss_pred eeeeeeeccccc
Q psy13629 285 LTFIEVMDYDGY 296 (395)
Q Consensus 285 ~~~I~~~~~dG~ 296 (395)
.++|.++++++.
T Consensus 286 ~~~v~~~~~~~~ 297 (354)
T 3a9g_A 286 GSMLAAVNFGDN 297 (354)
T ss_dssp TTEEEEEEECGG
T ss_pred CCEEEEEEECCC
Confidence 999999998864
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-08 Score=97.99 Aligned_cols=188 Identities=11% Similarity=-0.016 Sum_probs=126.2
Q ss_pred EEEEeeCCCCCccEEec-----CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEcc-CCCCCceEEEEeC-CCCCcceEE
Q psy13629 109 DIRIANLSRPLKPVTII-----KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-GNNVGSKHNVITN-GLITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~-----~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~d-g~~~~~~~~i~~~-~~~~p~glA 181 (395)
.+.+++++......... +....+.+++|+++++.||.++...+.|..++++ ...+.....+... ....|.+++
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence 35666665322222111 2456899999999999999999888999999997 3321111112111 246799999
Q ss_pred EecCCCeEEEEeCCCCeEEEEECC---CCceE--EEEec---CC---C-------CceeEE-EeCCCCeEEEEeeCCCC-
Q psy13629 182 IDWLTEKLYWTDSETNKLEVSSLD---GKKRK--VLYWE---DI---D-------QPRAIA-LVPQDSIMFWTDWGEVP- 241 (395)
Q Consensus 182 VD~~~~~LYwtd~~~~~I~v~~ld---g~~~~--~l~~~---~~---~-------~P~~ia-vdp~~g~LYwtd~~~~~- 241 (395)
+++.++.||.++...+.|.+++++ |+... ..+.. .. . .|.+++ ++|+.++||.++.+...
T Consensus 200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~ 279 (365)
T 1jof_A 200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFE 279 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTT
T ss_pred ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCC
Confidence 999989999999888899998775 33221 11211 11 2 489999 99999999999865321
Q ss_pred ---eEEEEecCCCCcceEE--EEecCCcCceeEEEec---cccEEEEeccceeeeeeeccccc
Q psy13629 242 ---KIERGAMNGDPRHRKV--IVDSTIFWPNGIAIDF---NNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 242 ---~I~~~~~dG~~~~~~~--lv~~~~~~P~glalD~---~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
.|...+++....-..+ .+......|.++++++ ++++||+++...+.|...+.++.
T Consensus 280 ~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 280 LQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 7777777421122221 2333334699999998 78999999988888888887765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.4e-08 Score=94.71 Aligned_cols=165 Identities=11% Similarity=0.040 Sum_probs=118.0
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCC-------CCce---EEEEeCCCCCcceEEEecCCCeEEEEeCCCCe
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN-------VGSK---HNVITNGLITPDGLAIDWLTEKLYWTDSETNK 198 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~-------~~~~---~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~ 198 (395)
..+.+++|++.++.||+++...+.|..++++... +... ..........|.++++++.++.||+++...+.
T Consensus 155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 3468899999999999999889999999887542 1100 23334455679999999988899999988899
Q ss_pred EEEEECCCCceEEEEe-----cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEE--EecCCcCceeEEE
Q psy13629 199 LEVSSLDGKKRKVLYW-----EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVI--VDSTIFWPNGIAI 271 (395)
Q Consensus 199 I~v~~ldg~~~~~l~~-----~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~l--v~~~~~~P~glal 271 (395)
|.++++++...+.+.. .....|.+++++|+.++||+++.+....|...+++......+.+ +.. -..|.++++
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~ 313 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII 313 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE
Confidence 9999987544332221 22456889999999999999985424567777665100121111 222 347999999
Q ss_pred eccccEEEEeccceeeeeeeccc
Q psy13629 272 DFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 272 D~~~~rLYwaD~~~~~I~~~~~d 294 (395)
++++++||+++...+.|.....|
T Consensus 314 spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 314 TPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEEE
Confidence 99999999999777777664333
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.3e-08 Score=90.28 Aligned_cols=167 Identities=12% Similarity=0.054 Sum_probs=124.6
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 207 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~ 207 (395)
.+++.||+|++.++.||......+.|++++.+|. ....+...+...++|||++. ++.+|+++...+++.++.++..
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~---v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGD---LIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETTCC---EEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTT
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCC---EEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCC
Confidence 3679999999999999986657899999999965 44556567778999999995 6678888888899999987765
Q ss_pred ce-E--EEEecCC-CCc-----eeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC--cceEEEEe------cCCcCceeEE
Q psy13629 208 KR-K--VLYWEDI-DQP-----RAIALVPQDSIMFWTDWGEVPKIERGAMNGDP--RHRKVIVD------STIFWPNGIA 270 (395)
Q Consensus 208 ~~-~--~l~~~~~-~~P-----~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~--~~~~~lv~------~~~~~P~gla 270 (395)
.. . ....-.+ ..| .|||+||.++.||.+.-.....|+..+ |-. ...+++-. ..+..+.+++
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeecchhhccccccCCceeEE
Confidence 43 1 1111122 345 899999999999998744333788876 311 11233211 1345789999
Q ss_pred EeccccEEEEeccceeeeeeeccccceeee
Q psy13629 271 IDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 271 lD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
+|+..++||+.....+.+..++.+|..+..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~~~~~ 209 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGEVIGE 209 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCCEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCCEEEE
Confidence 999999999999999999999999985544
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-09 Score=100.35 Aligned_cols=163 Identities=15% Similarity=0.084 Sum_probs=119.0
Q ss_pred cEEecCCCCCeEEEEEEcCCCEEEEE-------ECCCCeEEEEEccCCCCCceEEEEeC----CCCCcceEEEecCCCeE
Q psy13629 121 PVTIIKDLEEGAAIDYYYKKSMVCWT-------DHGTEMISCCTFDGNNVGSKHNVITN----GLITPDGLAIDWLTEKL 189 (395)
Q Consensus 121 ~~~~~~~~~~~~gl~~d~~~~~lyws-------d~~~~~I~~~~~dg~~~~~~~~i~~~----~~~~p~glAVD~~~~~L 189 (395)
...+...+..+.+++||. ++.||++ +...+.|.+++.++. ....+... ....|.++++|+.+++|
T Consensus 10 ~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~~~~~g~l 85 (314)
T 1pjx_A 10 FTKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTG---KKTVICKPEVNGYGGIPAGCQCDRDANQL 85 (314)
T ss_dssp CEEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTC---CEEEEECCEETTEECCEEEEEECSSSSEE
T ss_pred HhhhhccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCC---cEEEEEecccCCCCCCCceEEEecCCCcE
Confidence 445677888999999995 5579999 767789999987654 22333221 23579999999865899
Q ss_pred EEEeCCCCeEEEEECCCCceEEE-Eec----CCCCceeEEEeCCCCeEEEEeeCC--------------CCeEEEEecCC
Q psy13629 190 YWTDSETNKLEVSSLDGKKRKVL-YWE----DIDQPRAIALVPQDSIMFWTDWGE--------------VPKIERGAMNG 250 (395)
Q Consensus 190 Ywtd~~~~~I~v~~ldg~~~~~l-~~~----~~~~P~~iavdp~~g~LYwtd~~~--------------~~~I~~~~~dG 250 (395)
|+++.. +.|.+++.+|+. ..+ ... ....|++|++|+ +|.||+++.+. ...|++.+.+|
T Consensus 86 ~v~~~~-~~l~~~d~~g~~-~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 162 (314)
T 1pjx_A 86 FVADMR-LGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG 162 (314)
T ss_dssp EEEETT-TEEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS
T ss_pred EEEECC-CCEEEEeCCCCE-EEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCC
Confidence 999974 489999998443 333 211 135699999998 56899998543 25799998876
Q ss_pred CCcceEEEEecCCcCceeEEEe----ccccEEEEeccceeeeeeeccc
Q psy13629 251 DPRHRKVIVDSTIFWPNGIAID----FNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 251 ~~~~~~~lv~~~~~~P~glalD----~~~~rLYwaD~~~~~I~~~~~d 294 (395)
.... + ......|++++++ .++++|||++...+.|.+.+++
T Consensus 163 --~~~~-~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~ 206 (314)
T 1pjx_A 163 --QMIQ-V-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp --CEEE-E-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred --CEEE-e-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence 3322 2 2334579999999 8888999999888999988876
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-08 Score=93.67 Aligned_cols=181 Identities=15% Similarity=0.116 Sum_probs=138.6
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+++++.. .+..........+.+++|++.++.||++...++.|..++++.. .....+ .....+.++++++.++.
T Consensus 55 ~i~v~d~~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~---~~~~~~-~~~~~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 55 DVSIIDTAT-NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN---TVAGTV-KTGKSPLGLALSPDGKK 129 (391)
T ss_dssp EEEEEETTT-TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE-ECSSSEEEEEECTTSSE
T ss_pred eEEEEECCC-CeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCC---eEEEEE-eCCCCcceEEECCCCCE
Confidence 688888866 4444445555589999999999999999988899999999875 222222 23457899999998889
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
||++....+.|.+.++........+ .....|.+++++|.+++||++. .....|...++.. ......+. ....|.+
T Consensus 130 l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~dg~~l~~~~-~~~~~v~~~d~~~--~~~~~~~~-~~~~~~~ 204 (391)
T 1l0q_A 130 LYVTNNGDKTVSVINTVTKAVINTV-SVGRSPKGIAVTPDGTKVYVAN-FDSMSISVIDTVT--NSVIDTVK-VEAAPSG 204 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEE-ECCSSEEEEEECTTSSEEEEEE-TTTTEEEEEETTT--TEEEEEEE-CSSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEE-ecCCCcceEEECCCCCEEEEEe-CCCCEEEEEECCC--CeEEEEEe-cCCCccc
Confidence 9999998999999999877665555 3457789999999999999987 4467899999876 22222222 2347899
Q ss_pred EEEeccccEEEEecc--ceeeeeeeccccceee
Q psy13629 269 IAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRL 299 (395)
Q Consensus 269 lalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~ 299 (395)
+++++.+++||.+.. ..+.|...++......
T Consensus 205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred eEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 999999999999986 6788888887655443
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-08 Score=95.74 Aligned_cols=184 Identities=10% Similarity=0.053 Sum_probs=128.4
Q ss_pred EEEEeeCCCCC--ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEcc--CCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRPL--KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD--GNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~--~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~d--g~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.|++++++... ...........+.+++|++.++.||+++..++.|..++++ +.. ............|.++++++
T Consensus 16 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~ 93 (343)
T 1ri6_A 16 QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA--LTFAAESALPGSLTHISTDH 93 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC--EEEEEEEECSSCCSEEEECT
T ss_pred eEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc--eeeccccccCCCCcEEEEcC
Confidence 56777775322 2333345567789999999999999999777899998887 332 11111112233899999999
Q ss_pred CCCeEEEEeCCCCeEEEEECC-CCceEE-EEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceE----EE
Q psy13629 185 LTEKLYWTDSETNKLEVSSLD-GKKRKV-LYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRK----VI 258 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ld-g~~~~~-l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~----~l 258 (395)
.++.||+++...+.|.+.+++ |..... ........|.+++++|..++||+++.+ ...|...+++....-.. .+
T Consensus 94 dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~v~~~d~~~~~~~~~~~~~~~ 172 (343)
T 1ri6_A 94 QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-QDRICLFTVSDDGHLVAQDPAEV 172 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-GTEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC-CCEEEEEEecCCCceeeeccccc
Confidence 888999999888899999884 322221 122456679999999999999999843 46788877764112221 11
Q ss_pred EecCCcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 259 VDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 259 v~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
.......|.++++++++++||+++...+.|...+++.
T Consensus 173 ~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 173 TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred ccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 1122347999999999999999998888888888753
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-08 Score=94.35 Aligned_cols=183 Identities=11% Similarity=0.047 Sum_probs=123.4
Q ss_pred EEEEeeCCCCCccEEe---cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCC-CCceEEEEeCC--------CCC
Q psy13629 109 DIRIANLSRPLKPVTI---IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN-VGSKHNVITNG--------LIT 176 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~---~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~-~~~~~~i~~~~--------~~~ 176 (395)
.|.++++++ .....+ ......+.+++|+++++.||+++..++.|..++++... ......+...+ ...
T Consensus 64 ~v~~~~~~~-g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~ 142 (347)
T 3hfq_A 64 GIAAWQIDG-QTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSH 142 (347)
T ss_dssp EEEEEEEET-TEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCC
T ss_pred eEEEEEecC-CcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCC
Confidence 567777755 332222 33567889999999999999999888899888886321 11111111111 124
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEECCC-CceEEE---EecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC
Q psy13629 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDG-KKRKVL---YWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP 252 (395)
Q Consensus 177 p~glAVD~~~~~LYwtd~~~~~I~v~~ldg-~~~~~l---~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~ 252 (395)
|.++++++.++ +|+++...++|.+++++. .....+ .......|++++++|+.++||+++.. ...|...+++...
T Consensus 143 ~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-~~~v~v~~~~~~~ 220 (347)
T 3hfq_A 143 IHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL-SSQIASLKYDTQT 220 (347)
T ss_dssp EEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TTEEEEEEEETTT
T ss_pred ceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC-CCEEEEEEecCCC
Confidence 77899999766 999999999999999883 222211 11335579999999998899998843 5677777776310
Q ss_pred cceEE--EEecC------CcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 253 RHRKV--IVDST------IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 253 ~~~~~--lv~~~------~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
...+. .+... ...|.++++++++++||+++...+.|...+++
T Consensus 221 g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 221 GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 11111 11111 13588899999999999999888888877765
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-08 Score=96.45 Aligned_cols=154 Identities=13% Similarity=0.096 Sum_probs=114.5
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
....+.|.+|++.++.+||+|...+.|++++.++. ....+.. ...|.++++++ .+++|++.. ..|.++++++
T Consensus 47 ~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---~~~~~~~--~~~v~~i~~~~-dg~l~v~~~--~gl~~~d~~~ 118 (326)
T 2ghs_A 47 PMLLGEGPTFDPASGTAWWFNILERELHELHLASG---RKTVHAL--PFMGSALAKIS-DSKQLIASD--DGLFLRDTAT 118 (326)
T ss_dssp CCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTT---EEEEEEC--SSCEEEEEEEE-TTEEEEEET--TEEEEEETTT
T ss_pred CCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCC---cEEEEEC--CCcceEEEEeC-CCeEEEEEC--CCEEEEECCC
Confidence 34567899999999999999998999999999875 2222222 35789999997 567777763 4699999976
Q ss_pred CceEEEEecC----CCCceeEEEeCCCCeEEEEeeCC-----CCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccE
Q psy13629 207 KKRKVLYWED----IDQPRAIALVPQDSIMFWTDWGE-----VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRL 277 (395)
Q Consensus 207 ~~~~~l~~~~----~~~P~~iavdp~~g~LYwtd~~~-----~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~r 277 (395)
...+.+.... ...|+++++||. |.+|+++.+. ...|++++ +| ..+. + ......|++++++.+++.
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~-G~l~v~~~~~~~~~~~~~l~~~~-~g--~~~~-~-~~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVA-KG--KVTK-L-FADISIPNSICFSPDGTT 192 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEE-TT--EEEE-E-EEEESSEEEEEECTTSCE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCC-CCEEEEeCCCcCCCCceEEEEEe-CC--cEEE-e-eCCCcccCCeEEcCCCCE
Confidence 6655554221 246899999984 5688887542 35799998 66 3322 2 234457999999988889
Q ss_pred EEEeccceeeeeeeccc
Q psy13629 278 LYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 278 LYwaD~~~~~I~~~~~d 294 (395)
|||++...+.|.+.+++
T Consensus 193 lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEEEETTTCEEEEEEBC
T ss_pred EEEEECCCCEEEEEEcc
Confidence 99999888899999875
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-07 Score=88.07 Aligned_cols=183 Identities=11% Similarity=0.090 Sum_probs=121.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC-CceEEEEeCCCCC-----cceEEE
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-GSKHNVITNGLIT-----PDGLAI 182 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~-~~~~~i~~~~~~~-----p~glAV 182 (395)
.|..+++.+.-.......+...+.||+++. ++.++.++...++++.+.++.... ......-..-... .+|||+
T Consensus 50 ~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~ 128 (255)
T 3qqz_A 50 AIVEMTTNGDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAY 128 (255)
T ss_dssp EEEEEETTCCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEE
T ss_pred eEEEEeCCCCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEE
Confidence 677788875322333346678999999985 556778888889999988875421 0111111111123 499999
Q ss_pred ecCCCeEEEEeCCCC-eEEEEE--CCCCceEEEEe------cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc
Q psy13629 183 DWLTEKLYWTDSETN-KLEVSS--LDGKKRKVLYW------EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR 253 (395)
Q Consensus 183 D~~~~~LYwtd~~~~-~I~v~~--ldg~~~~~l~~------~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~ 253 (395)
|+.++.||.+..... .|+..+ +.+....++-. .....+.+|++||.++.||+.. .++.++..++.+|...
T Consensus 129 d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS-~~s~~L~~~d~~g~~~ 207 (255)
T 3qqz_A 129 SRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLS-HESRALQEVTLVGEVI 207 (255)
T ss_dssp ETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEE-TTTTEEEEECTTCCEE
T ss_pred eCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEE-CCCCeEEEEcCCCCEE
Confidence 999999999886554 677776 22222233211 1356799999999999999987 6689999999999321
Q ss_pred ceEEEEec------CCcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 254 HRKVIVDS------TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 254 ~~~~lv~~------~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
....+... .+.+|.|||+|. +++||++... |.++++..++
T Consensus 208 ~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIvsE~-n~~y~f~~~~ 253 (255)
T 3qqz_A 208 GEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIVSEP-NRFYRFTPQS 253 (255)
T ss_dssp EEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEEETT-TEEEEEEC--
T ss_pred EEEEcCCccCCcccccCCCCeeEECC-CCCEEEEcCC-ceEEEEEecC
Confidence 22222211 246999999995 5679999644 6777776543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-08 Score=93.69 Aligned_cols=185 Identities=13% Similarity=0.115 Sum_probs=125.6
Q ss_pred EEEEeeCC-C-CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccC-CCCCceE--EEEeCCCCCcceEEEe
Q psy13629 109 DIRIANLS-R-PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDG-NNVGSKH--NVITNGLITPDGLAID 183 (395)
Q Consensus 109 ~I~~~~l~-~-~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg-~~~~~~~--~i~~~~~~~p~glAVD 183 (395)
.|.+++++ + .............+.+++|++.++.||+++..++.|..++++. ....... .........|.+++++
T Consensus 107 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (343)
T 1ri6_A 107 NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH 186 (343)
T ss_dssp EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC
T ss_pred eEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC
Confidence 46777663 2 1223344456667899999999999999997888999999875 3111111 2222334579999999
Q ss_pred cCCCeEEEEeCCCCeEEEEECCC--Cce--EEEEec---C---CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc
Q psy13629 184 WLTEKLYWTDSETNKLEVSSLDG--KKR--KVLYWE---D---IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR 253 (395)
Q Consensus 184 ~~~~~LYwtd~~~~~I~v~~ldg--~~~--~~l~~~---~---~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~ 253 (395)
+.++.||+++...+.|.+.+++. ... ...+.. . ...|.+++++|.+++||++.. ....|...+++....
T Consensus 187 pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~-~~~~i~v~d~~~~~~ 265 (343)
T 1ri6_A 187 PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR-TASLITVFSVSEDGS 265 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET-TTTEEEEEEECTTSC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec-CCCEEEEEEEcCCCC
Confidence 98888999998889999999964 211 111211 1 346778999999999999884 356788888872102
Q ss_pred ceEEEEe-cCCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 254 HRKVIVD-STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 254 ~~~~lv~-~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
..+.+.. .....|.+++++.++++||+++...+.|...+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 266 VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 2222211 1223499999999999999999777777666444
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.05 E-value=7e-09 Score=100.46 Aligned_cols=159 Identities=16% Similarity=0.090 Sum_probs=117.4
Q ss_pred ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE------eCCCCCcceEEEecC---CCeEE
Q psy13629 120 KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI------TNGLITPDGLAIDWL---TEKLY 190 (395)
Q Consensus 120 ~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~------~~~~~~p~glAVD~~---~~~LY 190 (395)
..+.++.++..|.+|+|.+++ .||+++...++|+++..++. ....+. ..+...+.|||+++. ++.||
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g---~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lY 98 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTG---RKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVY 98 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTC---CEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEE
T ss_pred eeEEeecCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCC---cEeeecccCceeecCCCCceeeEeccccccCCEEE
Confidence 456778889999999999875 59999976899999986543 222221 234567999999984 78999
Q ss_pred EEe--CCCCeEEEEECCCC--------ceEEEEe----cCCCCceeEEEeCCCCeEEEEeeC-------------CCCeE
Q psy13629 191 WTD--SETNKLEVSSLDGK--------KRKVLYW----EDIDQPRAIALVPQDSIMFWTDWG-------------EVPKI 243 (395)
Q Consensus 191 wtd--~~~~~I~v~~ldg~--------~~~~l~~----~~~~~P~~iavdp~~g~LYwtd~~-------------~~~~I 243 (395)
++. ...++|.++.+++. ..++++. ...+....|+++| .|+||++. + ...+|
T Consensus 99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~-Gd~~~~~~~qd~~~~~G~I 176 (347)
T 3das_A 99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGT-GESGDTGLSQDRKSLGGKI 176 (347)
T ss_dssp EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEEC-BCTTCGGGTTCTTCSTTCE
T ss_pred EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEE-CCCCCCccccCCCCCCCEE
Confidence 865 35679999998872 2345543 2356788899998 56999995 2 24799
Q ss_pred EEEecCCCCc------ceEEEEecCCcCceeEEEeccccEEEEecccee
Q psy13629 244 ERGAMNGDPR------HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLT 286 (395)
Q Consensus 244 ~~~~~dG~~~------~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~ 286 (395)
.|++.||... .. .++...+..|.||++|. .++||++|...+
T Consensus 177 lRi~~dG~ip~~nPf~~~-~i~a~G~RNp~Gla~dp-~G~L~~~d~g~~ 223 (347)
T 3das_A 177 LRMTPDGEPAPGNPFPGS-PVYSYGHRNVQGLAWDD-KQRLFASEFGQD 223 (347)
T ss_dssp EEECTTSSBCTTCSSTTC-CEEEBCCSBCCEEEECT-TCCEEEEECCSS
T ss_pred EEEeCCCCccCCCCCCCC-eEEeeCCCCcceEEECC-CCCEEEEecCCC
Confidence 9999999310 33 35667788999999997 589999996543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=99.04 E-value=7.9e-09 Score=103.96 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=116.0
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eC-------CCCCcceEEEecC---CC
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TN-------GLITPDGLAIDWL---TE 187 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~-------~~~~p~glAVD~~---~~ 187 (395)
.+.+.++..+..|.+|+|++++ +||+++...++|+++..++. ....+. .. +...+.|||+++. ++
T Consensus 17 f~~~~~a~~l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g---~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g 92 (454)
T 1cru_A 17 FDKKVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESG---SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP 92 (454)
T ss_dssp SCEEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTC---CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred eEEEEEECCCCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCC---cEeEEecCCccccccCCCCceeEEEECCCcCcCC
Confidence 4566777889999999999876 59999977678999886532 222222 11 2234559999987 89
Q ss_pred eEEEEeCC------------CCeEEEEECCCC-----ceEEEEe----cCCCCceeEEEeCCCCeEEEEeeCC-------
Q psy13629 188 KLYWTDSE------------TNKLEVSSLDGK-----KRKVLYW----EDIDQPRAIALVPQDSIMFWTDWGE------- 239 (395)
Q Consensus 188 ~LYwtd~~------------~~~I~v~~ldg~-----~~~~l~~----~~~~~P~~iavdp~~g~LYwtd~~~------- 239 (395)
.||+++.. ..+|.++++++. ..++++. ...+.+.+|+++| .|+||++....
T Consensus 93 ~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~ 171 (454)
T 1cru_A 93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAY 171 (454)
T ss_dssp EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGG
T ss_pred EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccc
Confidence 99999853 358999987642 3345553 2357799999999 56899996321
Q ss_pred ------------------------CCeEEEEecCCCCc--------ceEEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 240 ------------------------VPKIERGAMNGDPR--------HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 240 ------------------------~~~I~~~~~dG~~~--------~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
..+|.|++.||..- .+..++...+..|.||++|. .++||++|...
T Consensus 172 ~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp-~G~L~~~d~g~ 248 (454)
T 1cru_A 172 LFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGP 248 (454)
T ss_dssp TTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECS
T ss_pred cccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECC-CCCEEEEecCC
Confidence 36899999999310 03345667788999999997 68999999654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.8e-08 Score=90.02 Aligned_cols=180 Identities=14% Similarity=0.018 Sum_probs=127.1
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceE
Q psy13629 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 210 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~ 210 (395)
..||.|+ ++.||.+....++|.+++++.... ...+ ...-...+|++++ +++||.+++..+.+.++|.+.....
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv--~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQP--VWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSC--SEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcE--EeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 3799998 589999999888999999986543 2334 4443445778876 7899999999999999999876665
Q ss_pred EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC---CcCceeEEEeccccEEEEeccceee
Q psy13629 211 VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST---IFWPNGIAIDFNNRLLYWIDGRLTF 287 (395)
Q Consensus 211 ~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~---~~~P~glalD~~~~rLYwaD~~~~~ 287 (395)
.-+.. ...+.||+- +++.||.|| + ..+|..++.......+++-+..+ +..+|+|... +++||...+..+.
T Consensus 130 ~ti~~-~~eGwGLt~--Dg~~L~vSd-G-s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~ 202 (268)
T 3nok_A 130 RTTRY-SGEGWGLCY--WNGKLVRSD-G-GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSD 202 (268)
T ss_dssp EEEEC-SSCCCCEEE--ETTEEEEEC-S-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEeC-CCceeEEec--CCCEEEEEC-C-CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCe
Confidence 54533 234566664 488999999 6 78999999876434445555442 4467777765 7799999999999
Q ss_pred eeeeccccceeeeeeeceeeee-eeec-----cCCccccceeeeecc
Q psy13629 288 IEVMDYDGYVRLVTSLGHINLE-LYCN-----VFPKTCENFMKHCEN 328 (395)
Q Consensus 288 I~~~~~dG~~~~~t~~g~~~i~-Lf~d-----~ap~t~~nf~~l~~~ 328 (395)
|.++|........+ +.++ |.++ ..+..+.|-+++...
T Consensus 203 I~vIDp~TG~V~~~----Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 203 VLEIDPATGTVVGV----IDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EEEECTTTCBEEEE----EECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEEEeCCCCcEEEE----EECCCCcccccccccCcCCceEEEEEcCC
Confidence 99999865554442 2222 2221 224557788887764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-08 Score=98.07 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=116.5
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCC-------CcceEEE---ecCCCeEEE-EeC---
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLI-------TPDGLAI---DWLTEKLYW-TDS--- 194 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~-------~p~glAV---D~~~~~LYw-td~--- 194 (395)
--|.+.+||...+++|+++...++|.+++.++. ....+....+. .|.||.+ |+. ++|++ ++.
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~a 88 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---SHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKS 88 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTC---CEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCC---eEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccc
Confidence 457899999999999999999999999999854 22333333322 4789999 675 77777 552
Q ss_pred ---------CCCeEEEEECC----CCceEEEEec------------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 195 ---------ETNKLEVSSLD----GKKRKVLYWE------------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 195 ---------~~~~I~v~~ld----g~~~~~l~~~------------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
....+.+++++ |+....+--. ....++++++|+ .|..|+++....+.|.+++.|
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCC
Confidence 35789999999 4433222101 223589999997 789999995422899999999
Q ss_pred CCCcceEEEEecC-----CcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 250 GDPRHRKVIVDST-----IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 250 G~~~~~~~lv~~~-----~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
| .....+.... ...++||++++++..|++++. .+++.+++++
T Consensus 168 G--~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 168 G--KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS 214 (334)
T ss_dssp S--CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred C--CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence 9 5444443221 234789999999999999998 8999998877
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.01 E-value=6.8e-08 Score=89.48 Aligned_cols=173 Identities=15% Similarity=0.090 Sum_probs=117.5
Q ss_pred EEEEEeeCCCCCccEEecCCCCCe--EEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEG--AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~--~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
+.|+++|+.. .+.....+....+ .|++.+ +++||..++.++.+++++.+... ...++-.. ++|.++.+.
T Consensus 65 S~v~~vD~~T-gkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~----~eG~glt~d 135 (262)
T 3nol_A 65 SSIRKVDIES-GKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR--QVRSFNYD----GEGWGLTHN 135 (262)
T ss_dssp EEEEEECTTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC--EEEEEECS----SCCCCEEEC
T ss_pred ceEEEEECCC-CcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc--EEEEEECC----CCceEEecC
Confidence 3688999877 4444333444454 556665 78999999999999999998642 22333332 244444455
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEEEe-c----CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVLYW-E----DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l~~-~----~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
++.||.+|. .++|.+.|........-+. . ....++.+... +|+||...|. ...|.+++.... .-...+--
T Consensus 136 g~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~-~~~I~vIDp~tG-~V~~~Id~ 210 (262)
T 3nol_A 136 DQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQ-TNKIVRIDPETG-KVTGIIDL 210 (262)
T ss_dssp SSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-SSEEEEECTTTC-BEEEEEEC
T ss_pred CCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEcc-CCeEEEEECCCC-cEEEEEEC
Confidence 899999995 7899999998654443222 1 23556666665 7899999987 678999998652 22222222
Q ss_pred cC-----------CcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 261 ST-----------IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 261 ~~-----------~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
.. ..-|||||+|..+++||++.-.-.+++.+.+.
T Consensus 211 ~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~ 255 (262)
T 3nol_A 211 NGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT 255 (262)
T ss_dssp TTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence 11 23689999999999999999777777766653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-07 Score=87.02 Aligned_cols=173 Identities=14% Similarity=0.062 Sum_probs=118.0
Q ss_pred EEEEEeeCCCCCccEEecCCCCCe--EEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEG--AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~--~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
+.|+++|+.. .+.....+....+ .|++.+ +++||..++.++.+++++.+.-. ...++... .+|.++.+.
T Consensus 43 S~v~~vD~~t-gkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~--~~~ti~~~----~~Gwglt~d 113 (243)
T 3mbr_X 43 SSVRKVDLET-GRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT--PRARFRYP----GEGWALTSD 113 (243)
T ss_dssp CEEEEEETTT-CCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE--EEEEEECS----SCCCEEEEC
T ss_pred ceEEEEECCC-CCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc--EEEEEeCC----CCceEEeeC
Confidence 3788999977 4444444444444 555555 78999999999999999998642 22333332 345555566
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEEEec-----CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVLYWE-----DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~-----~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
++.||.+|. .++|.+.|........-+.- .+..++.+.. .+|+||...|. ...|.+++.... .-...+--
T Consensus 114 g~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~--~~G~lyanvw~-s~~I~vIDp~tG-~V~~~idl 188 (243)
T 3mbr_X 114 DSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW--VNGELLANVWL-TSRIARIDPASG-KVVAWIDL 188 (243)
T ss_dssp SSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE--ETTEEEEEETT-TTEEEEECTTTC-BEEEEEEC
T ss_pred CCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE--eCCEEEEEECC-CCeEEEEECCCC-CEEEEEEC
Confidence 899999995 88999999987555433321 1345566554 48999999987 678999999652 22222221
Q ss_pred c------------CCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 261 S------------TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 261 ~------------~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
. ...-|||||+|..+++||++--.-.+++.+.+.
T Consensus 189 ~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~ 234 (243)
T 3mbr_X 189 QALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT 234 (243)
T ss_dssp GGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred CcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence 1 123689999999999999998777777766654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-07 Score=85.53 Aligned_cols=181 Identities=12% Similarity=-0.006 Sum_probs=125.0
Q ss_pred eEEEEEEcCCCEEEEEECCC--CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCc
Q psy13629 131 GAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~~--~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~ 208 (395)
.-||.|+. +.||.+.... ..|.+++++... -...+........+|++++ +++||..+...+.+.++|.+...
T Consensus 23 tqGL~~~~--~~LyestG~~g~S~v~~vD~~tgk--v~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 23 TEGLFYLR--GHLYESTGETGRSSVRKVDLETGR--ILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp EEEEEEET--TEEEEEECCTTSCEEEEEETTTCC--EEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccEEEEC--CEEEEECCCCCCceEEEEECCCCC--EEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 46999985 7899998653 589999998653 2233333333445777776 79999999999999999998766
Q ss_pred eEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC---CcCceeEEEeccccEEEEeccce
Q psy13629 209 RKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST---IFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 209 ~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~---~~~P~glalD~~~~rLYwaD~~~ 285 (395)
...-+... ..+.||+ ++++.||.|| + ..+|...+.......+++-+..+ +..+|.|... +++||...+.+
T Consensus 97 ~~~ti~~~-~~Gwglt--~dg~~L~vSd-g-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYP-GEGWALT--SDDSHLYMSD-G-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLT 169 (243)
T ss_dssp EEEEEECS-SCCCEEE--ECSSCEEEEC-S-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTT
T ss_pred EEEEEeCC-CCceEEe--eCCCEEEEEC-C-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECCC
Confidence 65545332 3455555 5689999999 6 78899999876333344445432 3456776655 88999999999
Q ss_pred eeeeeeccccceeee-eeeceeeeeeeec-----cCCccccceeeeecc
Q psy13629 286 TFIEVMDYDGYVRLV-TSLGHINLELYCN-----VFPKTCENFMKHCEN 328 (395)
Q Consensus 286 ~~I~~~~~dG~~~~~-t~~g~~~i~Lf~d-----~ap~t~~nf~~l~~~ 328 (395)
+.|.++|.....+.. ..++. |.++ .....+.|-+++...
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~----l~~~~~~~~~~~~~vlNGIA~d~~ 214 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQA----LVPDADALTDSTNDVLNGIAFDAE 214 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGG----GSTTTTSCCCTTSSCEEEEEEETT
T ss_pred CeEEEEECCCCCEEEEEECCc----CccccccccCCcCCceEEEEEcCC
Confidence 999999986555544 22222 2221 234557788888764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.1e-08 Score=91.69 Aligned_cols=176 Identities=14% Similarity=0.092 Sum_probs=120.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC----CCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG----LITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~----~~~p~glAVD~ 184 (395)
.|.+++.++ ...... .....+.++++++.+ +++++. .+.|++++.++. ....+.... ...++++++|+
T Consensus 72 ~i~~~d~~~-~~~~~~-~~~~~v~~i~~~~dg-~l~v~~--~~gl~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~d~ 143 (326)
T 2ghs_A 72 ELHELHLAS-GRKTVH-ALPFMGSALAKISDS-KQLIAS--DDGLFLRDTATG---VLTLHAELESDLPGNRSNDGRMHP 143 (326)
T ss_dssp EEEEEETTT-TEEEEE-ECSSCEEEEEEEETT-EEEEEE--TTEEEEEETTTC---CEEEEECSSTTCTTEEEEEEEECT
T ss_pred EEEEEECCC-CcEEEE-ECCCcceEEEEeCCC-eEEEEE--CCCEEEEECCCC---cEEEEeeCCCCCCCCCCCCEEECC
Confidence 577788766 333322 223578999999865 466665 346999998754 233333211 24588999998
Q ss_pred CCCeEEEEeCC------CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC---C-CCcc
Q psy13629 185 LTEKLYWTDSE------TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN---G-DPRH 254 (395)
Q Consensus 185 ~~~~LYwtd~~------~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d---G-~~~~ 254 (395)
.+++|+++.. .+.|++++ +|+.. .+. .....|++++++|+.+.|||++.. ..+|.+.+.+ | ....
T Consensus 144 -~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~-~~~-~~~~~~~~i~~s~dg~~lyv~~~~-~~~I~~~d~~~~~Gl~~~~ 218 (326)
T 2ghs_A 144 -SGALWIGTMGRKAETGAGSIYHVA-KGKVT-KLF-ADISIPNSICFSPDGTTGYFVDTK-VNRLMRVPLDARTGLPTGK 218 (326)
T ss_dssp -TSCEEEEEEETTCCTTCEEEEEEE-TTEEE-EEE-EEESSEEEEEECTTSCEEEEEETT-TCEEEEEEBCTTTCCBSSC
T ss_pred -CCCEEEEeCCCcCCCCceEEEEEe-CCcEE-Eee-CCCcccCCeEEcCCCCEEEEEECC-CCEEEEEEcccccCCcccC
Confidence 5678888742 46889988 65433 333 455679999999998899999843 6789999986 4 3333
Q ss_pred eEEEEec--CCcCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 255 RKVIVDS--TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 255 ~~~lv~~--~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
++.+... ....|.|+++| .+++||+++...+.|.+++.+|...
T Consensus 219 ~~~~~~~~~~~~~p~gi~~d-~~G~lwva~~~~~~v~~~d~~g~~~ 263 (326)
T 2ghs_A 219 AEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDGNHI 263 (326)
T ss_dssp CEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTTCCEE
T ss_pred ceEEEECCCCCCCCCeeEEC-CCCCEEEEEeCCCEEEEECCCCCEE
Confidence 4444432 34579999999 4568999987778899999877543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-08 Score=98.05 Aligned_cols=198 Identities=11% Similarity=-0.050 Sum_probs=134.8
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC---------CCCeEEEEEccCCCCCceEEEEeC------
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH---------GTEMISCCTFDGNNVGSKHNVITN------ 172 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~---------~~~~I~~~~~dg~~~~~~~~i~~~------ 172 (395)
..|.++|+.. .+....++.-..| ++++++++++||+++. ..+.|..++..... ....+...
T Consensus 99 ~~VsVID~~t-~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 99 TQQFVIDGST-GRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDAPRFL 174 (426)
T ss_dssp EEEEEEETTT-TEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCC
T ss_pred CeEEEEECCC-CEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCccccc
Confidence 5788899877 5555555555678 9999999999999985 35678888877542 23344443
Q ss_pred CCCCcceEEEecCCCeEEEEeCC-CCeEEEEECCCCceEEEEecC-----------------------------------
Q psy13629 173 GLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWED----------------------------------- 216 (395)
Q Consensus 173 ~~~~p~glAVD~~~~~LYwtd~~-~~~I~v~~ldg~~~~~l~~~~----------------------------------- 216 (395)
....|.++++++.++.||+++.. .+.|.+.|+.......-+.-.
T Consensus 175 ~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 175 VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 13579999999999999999965 678888887654322111000
Q ss_pred ---------------C---------------------------------------------CCcee---EEEeCCCCeEE
Q psy13629 217 ---------------I---------------------------------------------DQPRA---IALVPQDSIMF 233 (395)
Q Consensus 217 ---------------~---------------------------------------------~~P~~---iavdp~~g~LY 233 (395)
. ..|.+ ++++|++++||
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 0 01333 77888888888
Q ss_pred EEeeC--------CCCeEEEEecCCCCcceEEEEecCCcCceeEEEecccc-EEEEeccceeeeeeeccccceeeee--e
Q psy13629 234 WTDWG--------EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR-LLYWIDGRLTFIEVMDYDGYVRLVT--S 302 (395)
Q Consensus 234 wtd~~--------~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~-rLYwaD~~~~~I~~~~~dG~~~~~t--~ 302 (395)
+++.. ....|..+++.....-+++-+.. .|.+|+++.+++ +||++++..+.|.++|........+ .
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~ 411 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQ 411 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEECCC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecC
Confidence 88631 12468888877532233333333 599999999998 9999999999999999876655543 3
Q ss_pred ecee-eeeeee
Q psy13629 303 LGHI-NLELYC 312 (395)
Q Consensus 303 ~g~~-~i~Lf~ 312 (395)
.|.. .+.+++
T Consensus 412 vG~~P~~i~~~ 422 (426)
T 3c75_H 412 LGRGPQIITTH 422 (426)
T ss_dssp CSSSCCEEECC
T ss_pred CCCCCcEEEcC
Confidence 4443 554443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-07 Score=86.64 Aligned_cols=181 Identities=10% Similarity=-0.006 Sum_probs=124.7
Q ss_pred eEEEEEEcCCCEEEEEECCC--CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCc
Q psy13629 131 GAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~~--~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~ 208 (395)
..||.|+ ++.||.+.... ..|.+++++... ....+....-...+||+++ +++||.+++..+.+.++|++...
T Consensus 45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgk--v~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGK--TLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCC--EEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE--CCEEEEECCCCCCceEEEEECCCCc--EEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence 3899998 46999998654 489999998653 2233433333345778886 78999999999999999998766
Q ss_pred eEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec---CCcCceeEEEeccccEEEEeccce
Q psy13629 209 RKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS---TIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 209 ~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~---~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
...-+... ..+.|++ ++++.||.|| + ..+|..++.......+++-+.. .+..+|.|... +++||...+..
T Consensus 119 ~~~ti~~~-~eG~glt--~dg~~L~~Sd-G-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~ 191 (262)
T 3nol_A 119 QVRSFNYD-GEGWGLT--HNDQYLIMSD-G-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQT 191 (262)
T ss_dssp EEEEEECS-SCCCCEE--ECSSCEEECC-S-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTS
T ss_pred EEEEEECC-CCceEEe--cCCCEEEEEC-C-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccC
Confidence 55444332 2455555 5588999999 6 6889999987633444555543 24567777765 78999999999
Q ss_pred eeeeeeccccceeee-eeeceeeeeeee----ccCCccccceeeeecc
Q psy13629 286 TFIEVMDYDGYVRLV-TSLGHINLELYC----NVFPKTCENFMKHCEN 328 (395)
Q Consensus 286 ~~I~~~~~dG~~~~~-t~~g~~~i~Lf~----d~ap~t~~nf~~l~~~ 328 (395)
+.|.++|.....+.. ..... |.+ ...+..+.|-+++...
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~----L~~~~~~~~~~~~vlNGIA~dp~ 235 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNG----ILAEAGPLPSPIDVLNGIAWDKE 235 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTT----GGGGSCSCCSSCCCEEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEECCc----CccccccccCcCCceEEEEEcCC
Confidence 999999986555444 22211 222 1234567788888764
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-08 Score=95.03 Aligned_cols=169 Identities=14% Similarity=0.079 Sum_probs=115.7
Q ss_pred CCCCeEEEEEEcC---CCEEEEEECC-------CCeEEEEEccCCC--CCceEEEEeC------CCCCcceEEEecCCCe
Q psy13629 127 DLEEGAAIDYYYK---KSMVCWTDHG-------TEMISCCTFDGNN--VGSKHNVITN------GLITPDGLAIDWLTEK 188 (395)
Q Consensus 127 ~~~~~~gl~~d~~---~~~lywsd~~-------~~~I~~~~~dg~~--~~~~~~i~~~------~~~~p~glAVD~~~~~ 188 (395)
....+.+|+++++ ++.||+++.. ..+|.|+.+++.. +...++++.. ....+.+|++++ .++
T Consensus 64 g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~ 142 (353)
T 2g8s_A 64 GQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGY 142 (353)
T ss_dssp TTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSE
T ss_pred CCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCc
Confidence 3456799999997 8999999754 4589999887531 2233444432 234588999998 669
Q ss_pred EEEEeCC-------------CCeEEEEECCCCc------------eEEEEecCCCCceeEEEeCCCCeEEEEeeCC--CC
Q psy13629 189 LYWTDSE-------------TNKLEVSSLDGKK------------RKVLYWEDIDQPRAIALVPQDSIMFWTDWGE--VP 241 (395)
Q Consensus 189 LYwtd~~-------------~~~I~v~~ldg~~------------~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~--~~ 241 (395)
||++... .++|.+++.+|+. ...+....+.+|.+|++||..|.||++|.+. ..
T Consensus 143 Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~d 222 (353)
T 2g8s_A 143 LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGD 222 (353)
T ss_dssp EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCE
T ss_pred EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCc
Confidence 9999743 3589999999972 2334457889999999999899999999762 23
Q ss_pred eEEEEecCCCC--------------------------cceEEEEecCCcCceeEEEec------cccEEEEeccceeeee
Q psy13629 242 KIERGAMNGDP--------------------------RHRKVIVDSTIFWPNGIAIDF------NNRLLYWIDGRLTFIE 289 (395)
Q Consensus 242 ~I~~~~~dG~~--------------------------~~~~~lv~~~~~~P~glalD~------~~~rLYwaD~~~~~I~ 289 (395)
.|.++...+.- .......-.....|.|+++.. ..+.+|++|...++|.
T Consensus 223 ei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~ 302 (353)
T 2g8s_A 223 EINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVI 302 (353)
T ss_dssp EEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEE
T ss_pred EEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEE
Confidence 44443221100 000001001123699999974 2479999999999999
Q ss_pred eeccccc
Q psy13629 290 VMDYDGY 296 (395)
Q Consensus 290 ~~~~dG~ 296 (395)
++++++.
T Consensus 303 ~~~~~~~ 309 (353)
T 2g8s_A 303 VMSVNGD 309 (353)
T ss_dssp EEEEETT
T ss_pred EEEeCCC
Confidence 9998864
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.7e-08 Score=92.40 Aligned_cols=182 Identities=12% Similarity=0.045 Sum_probs=123.1
Q ss_pred EEEEEeeCCCCCccEEecCCCC-------CeEEEEE---EcCCCEEEE-EEC------------CCCeEEEEEccCCCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLE-------EGAAIDY---YYKKSMVCW-TDH------------GTEMISCCTFDGNNVG 164 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~-------~~~gl~~---d~~~~~lyw-sd~------------~~~~I~~~~~dg~~~~ 164 (395)
..|.+++.++........+... .+.||.+ |+. ++|+. ++. +.+.+.+++++++...
T Consensus 35 g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg 113 (334)
T 2p9w_A 35 GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENS 113 (334)
T ss_dssp TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTC
T ss_pred CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCC
Confidence 3777788775222223333322 5789999 777 66776 662 3578999999921100
Q ss_pred ceEEEEe-C------------CCCCcceEEEecCCCeEEEEeCCC-CeEEEEECCCCceEEEEecC-----CCCceeEEE
Q psy13629 165 SKHNVIT-N------------GLITPDGLAIDWLTEKLYWTDSET-NKLEVSSLDGKKRKVLYWED-----IDQPRAIAL 225 (395)
Q Consensus 165 ~~~~i~~-~------------~~~~p~glAVD~~~~~LYwtd~~~-~~I~v~~ldg~~~~~l~~~~-----~~~P~~iav 225 (395)
.....+. . ....++++++|. .|++|+++... +.|.+.+.||+......... ..-++||++
T Consensus 114 ~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~ 192 (334)
T 2p9w_A 114 KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITF 192 (334)
T ss_dssp CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEE
T ss_pred CEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEE
Confidence 1111111 1 223589999997 89999999888 99999999999665544221 233779999
Q ss_pred eCCCCeEEEEeeCCCCeEEEEecCCCCcce-EEEEe-----cCCcCceeE-EEeccccEEEEeccceeeeeeecccc
Q psy13629 226 VPQDSIMFWTDWGEVPKIERGAMNGDPRHR-KVIVD-----STIFWPNGI-AIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 226 dp~~g~LYwtd~~~~~~I~~~~~dG~~~~~-~~lv~-----~~~~~P~gl-alD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
+|.+..|++.+ + ..++.+++++. ..+ .+-+. ..+..|.+| ++.+.++-|++++...+.+...+.||
T Consensus 193 ~pdg~~Liv~~-~-~g~L~~fD~~~--pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 193 DPHSNKLIAFG-G-PRALTAFDVSK--PYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp ETTTTEEEEES-S-SSSEEEEECSS--SSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred eCCCCEEEEEc-C-CCeEEEEcCCC--CcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 99999999998 5 78899999984 222 13232 135579995 66767777799997777776666777
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.9e-07 Score=87.30 Aligned_cols=180 Identities=17% Similarity=0.111 Sum_probs=132.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++++++.......+......+.+++|++.++.+|.++..++.|..++++.. . ..........|.++++++.++.
T Consensus 192 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~---~-~~~~~~~~~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK---L-EIRKTDKIGLPRGLLLSKDGKE 267 (433)
T ss_dssp EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT---E-EEEECCCCSEEEEEEECTTSSE
T ss_pred EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC---c-EEEEecCCCCceEEEEcCCCCE
Confidence 67888887633333444456789999999999999999988899999998764 2 2222333456899999998889
Q ss_pred EEEEeC-------CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec
Q psy13629 189 LYWTDS-------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 189 LYwtd~-------~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
||.+.. ..+.|.+.++.+......+ .....|.+++++|..+.||++. .....|...++++ ......+.
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~-~~~~~v~v~d~~~--~~~~~~~~- 342 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSD-MCCSKIEVYDLKE--KKVQKSIP- 342 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEE-TTTTEEEEEETTT--TEEEEEEE-
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEe-cCCCEEEEEECCC--CcEEEEec-
Confidence 988874 4568999999876555444 2234789999999988999997 4467899999885 22222222
Q ss_pred CCcCceeEEEeccccEEEEecccee--------------eeeeeccccce
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRLT--------------FIEVMDYDGYV 297 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~~--------------~I~~~~~dG~~ 297 (395)
....|.+++++++++.||++....+ .|...+.....
T Consensus 343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 3457999999988889999986543 77777765433
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-07 Score=92.73 Aligned_cols=184 Identities=9% Similarity=-0.069 Sum_probs=134.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec----
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW---- 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~---- 184 (395)
.|.++|... .+.....+....+.+++|+++++.||.++.. +.|..++++...+ .....+. ....|.++++++
T Consensus 160 ~V~v~D~~t-~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~-~~~~~i~-~g~~p~~va~sp~~~~ 235 (543)
T 1nir_A 160 QIALVDGDS-KKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEP-TKVAEIK-IGIEARSVESSKFKGY 235 (543)
T ss_dssp EEEEEETTT-CCEEEEEECSTTEEEEEECTTSCEEEEEETT-SEEEEEETTSSSC-EEEEEEE-CCSEEEEEEECCSTTC
T ss_pred eEEEEECCC-ceEEEEEecCcccceEEECCCCCEEEEECCC-CeEEEEECcCCCC-cEEEEEe-cCCCcceEEeCCCcCC
Confidence 788888876 4444444433348999999999999999965 9999999941111 1122222 345799999999
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEecC-----------CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWED-----------IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR 253 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~-----------~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~ 253 (395)
.++.||.++...++|.+.|.........+... ...+.+|+++|.++.+|++. .+..+|..++.+.. .
T Consensus 236 dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~-~~~g~i~vvd~~~~-~ 313 (543)
T 1nir_A 236 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV-KETGKVLLVNYKDI-D 313 (543)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE-TTTTEEEEEECTTS-S
T ss_pred CCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE-CCCCeEEEEEecCC-C
Confidence 89999999988899999998776655444321 22678999999999999988 44788999998652 1
Q ss_pred ceE-EEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 254 HRK-VIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 254 ~~~-~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
... ..+. .-.+|.++++|+++++||++....++|..+|.......
T Consensus 314 ~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~ 359 (543)
T 1nir_A 314 NLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS 359 (543)
T ss_dssp SCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred cceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE
Confidence 222 1222 34579999999999999999988999999998654433
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.87 E-value=4e-07 Score=88.97 Aligned_cols=178 Identities=19% Similarity=0.160 Sum_probs=132.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC-------CCCeEEEEEccCCCCCceEEEEeCCCCCcceEE
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH-------GTEMISCCTFDGNNVGSKHNVITNGLITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~-------~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glA 181 (395)
.|+++++.. .+.....+....+.++++++.++.|+.+.. .++.|..++++... ..... .....|.+++
T Consensus 235 ~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~---~~~~~-~~~~~~~~~~ 309 (433)
T 3bws_A 235 DISVIDRKT-KLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK---LIDTI-GPPGNKRHIV 309 (433)
T ss_dssp EEEEEETTT-TEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE---EEEEE-EEEECEEEEE
T ss_pred cEEEEECCC-CcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc---EEeec-cCCCCcceEE
Confidence 678888866 444555556677999999999999998875 35688899987642 22222 1123788999
Q ss_pred EecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCC-------------CeEEEEec
Q psy13629 182 IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEV-------------PKIERGAM 248 (395)
Q Consensus 182 VD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~-------------~~I~~~~~ 248 (395)
+++.++.||++....++|.+.++++......+ .....|.+++++|.+++||.+..... ..|...++
T Consensus 310 ~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~ 388 (433)
T 3bws_A 310 SGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT 388 (433)
T ss_dssp ECSSTTEEEEEETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred ECCCCCEEEEEecCCCEEEEEECCCCcEEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence 99988899999999999999999976665555 35677999999999999999885421 38999998
Q ss_pred CCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 249 NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 249 dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
.. ......+.. ...|.+++++++++.||.+....+.|...++++
T Consensus 389 ~~--~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 389 TT--DTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TT--TEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CC--CcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 65 232222322 347999999999999999987778887776654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-07 Score=86.55 Aligned_cols=173 Identities=9% Similarity=-0.032 Sum_probs=115.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+++|+........+.+...-..|++++ +++||..++.++.+++++.+... ...++-.. ..+.||+- .++.
T Consensus 76 ~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~~~--~eGwGLt~--Dg~~ 147 (268)
T 3nok_A 76 TLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQ--RERTTRYS--GEGWGLCY--WNGK 147 (268)
T ss_dssp EEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTE--EEEEEECS--SCCCCEEE--ETTE
T ss_pred EEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCc--EEEEEeCC--CceeEEec--CCCE
Confidence 48889987733332223332233557665 67899999999999999998642 22233322 23445554 4789
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEec-----CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec--
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWE-----DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS-- 261 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~-----~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~-- 261 (395)
||.+| +.++|.+.|........-+.- ....++.+... +|+||.+.|. ...|.+++........++-+..
T Consensus 148 L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~-s~~I~vIDp~TG~V~~~Idl~~L~ 223 (268)
T 3nok_A 148 LVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWH-SSDVLEIDPATGTVVGVIDASALT 223 (268)
T ss_dssp EEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-CSEEEEECTTTCBEEEEEECHHHH
T ss_pred EEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECC-CCeEEEEeCCCCcEEEEEECCCCc
Confidence 99999 489999999887554433321 13456666655 8899999987 6799999996521222222210
Q ss_pred ---------CCcCceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 262 ---------TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 262 ---------~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
...-|||||+|..+++||++.-.-.+++.+.+
T Consensus 224 ~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~ 264 (268)
T 3nok_A 224 RAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL 264 (268)
T ss_dssp HHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred ccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence 11368999999999999999877777776665
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-06 Score=83.23 Aligned_cols=163 Identities=9% Similarity=0.015 Sum_probs=114.8
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCC-CCce-EEEEeCC---------CCCcceEEEecCCCeEEEEeCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNN-VGSK-HNVITNG---------LITPDGLAIDWLTEKLYWTDSE 195 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~-~~~~-~~i~~~~---------~~~p~glAVD~~~~~LYwtd~~ 195 (395)
....+.++++ .++.||.++...+.|..++++... +... ..+...+ ...|.++++++.++.||+++..
T Consensus 98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 4457888888 688999999888999999986432 1111 1111111 1235789999988889999998
Q ss_pred CCeEEEEECCCCce-------------EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEE--Ee
Q psy13629 196 TNKLEVSSLDGKKR-------------KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVI--VD 260 (395)
Q Consensus 196 ~~~I~v~~ldg~~~-------------~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~l--v~ 260 (395)
.+.|.+++++.... ..........|++++++|+.++||+++.. ...|...+++. ...+.+ +.
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~~~~~--g~~~~~~~~~ 252 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-GGTVIAFRYAD--GMLDEIQTVA 252 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TCEEEEEEEET--TEEEEEEEEE
T ss_pred CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-CCeEEEEEecC--CceEEeEEEe
Confidence 89999998875431 12232456789999999999999999843 56788888764 222111 11
Q ss_pred ---cCCcCceeEEEeccccEEEEeccc-eeeeeeeccc
Q psy13629 261 ---STIFWPNGIAIDFNNRLLYWIDGR-LTFIEVMDYD 294 (395)
Q Consensus 261 ---~~~~~P~glalD~~~~rLYwaD~~-~~~I~~~~~d 294 (395)
.+...|.++++++++++||+++.. .+.|...+++
T Consensus 253 ~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 253 ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 123457899999999999999987 7778776664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-06 Score=82.21 Aligned_cols=133 Identities=9% Similarity=0.008 Sum_probs=94.7
Q ss_pred EEEEeeCCCCCccEEecCCCC---CeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCC----CCcceEE
Q psy13629 109 DIRIANLSRPLKPVTIIKDLE---EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL----ITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~---~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~----~~p~glA 181 (395)
.|.++++.. .+......... .+.++++++.++.+|+++...+.|..++++... ....+..... ..|.+++
T Consensus 12 ~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~ 88 (337)
T 1pby_B 12 KLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAA 88 (337)
T ss_dssp EEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEE
T ss_pred eEEEEECCC-CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccceE
Confidence 577788765 33333333333 588999999999999999888999999987642 2222322221 2789999
Q ss_pred EecCCCeEEEEeC-----------CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 182 IDWLTEKLYWTDS-----------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 182 VD~~~~~LYwtd~-----------~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
+++.++.||+++. ..+.|.+.++++......+ .....|.+++++|..++||+++ ..|...+++
T Consensus 89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~----~~i~~~d~~ 162 (337)
T 1pby_B 89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF-EAPRQITMLAWARDGSKLYGLG----RDLHVMDPE 162 (337)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE-ECCSSCCCEEECTTSSCEEEES----SSEEEEETT
T ss_pred ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEE-eCCCCcceeEECCCCCEEEEeC----CeEEEEECC
Confidence 9998889999962 3589999999876655555 3356799999999998899884 235555544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-07 Score=88.97 Aligned_cols=140 Identities=15% Similarity=0.122 Sum_probs=95.5
Q ss_pred CCCeEEEEEccCCCCCceEEEEeCC------CCCcceEEEecC---CCeEEEEeCC--CCeEEEEECCCC-ceEEEEe--
Q psy13629 149 GTEMISCCTFDGNNVGSKHNVITNG------LITPDGLAIDWL---TEKLYWTDSE--TNKLEVSSLDGK-KRKVLYW-- 214 (395)
Q Consensus 149 ~~~~I~~~~~dg~~~~~~~~i~~~~------~~~p~glAVD~~---~~~LYwtd~~--~~~I~v~~ldg~-~~~~l~~-- 214 (395)
..++|+++++++... ..+.+...+ .-.|.||.+... +.+||++|.. ..+|++++++.. ...+++.
T Consensus 81 ~~G~I~~~d~~~~~~-~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEP-AVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSC-CEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCC-ceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 467888888874211 223333332 248999999652 3479999965 566666555432 2233332
Q ss_pred --cCCCCceeEEEeCCCCeEEEEeeC----------------CCCeEEEEecCCCCcceEEEEecCCcCceeEEEecccc
Q psy13629 215 --EDIDQPRAIALVPQDSIMFWTDWG----------------EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR 276 (395)
Q Consensus 215 --~~~~~P~~iavdp~~g~LYwtd~~----------------~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~ 276 (395)
..+..|+++++++ .|.+|+++.. ...+|++++.. ..+ .+.+++..||||+++++++
T Consensus 160 ~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~----~~~-~~~~~l~~pNGia~spDg~ 233 (355)
T 3sre_A 160 RHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN----DVR-VVAEGFDFANGINISPDGK 233 (355)
T ss_dssp CCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT----CCE-EEEEEESSEEEEEECTTSS
T ss_pred ccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC----eEE-EeecCCcccCcceECCCCC
Confidence 3478899999998 5778887631 13578888762 223 3445678899999999999
Q ss_pred EEEEeccceeeeeeecccc
Q psy13629 277 LLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 277 rLYwaD~~~~~I~~~~~dG 295 (395)
.||++|...++|.+.++++
T Consensus 234 ~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 234 YVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEEGGGTEEEEEEECT
T ss_pred EEEEEeCCCCeEEEEEECC
Confidence 9999999999999998864
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-06 Score=85.29 Aligned_cols=184 Identities=6% Similarity=-0.107 Sum_probs=121.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC---------CCCeEEEEEccCCCCCceEEEEeC-C-----
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH---------GTEMISCCTFDGNNVGSKHNVITN-G----- 173 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~---------~~~~I~~~~~dg~~~~~~~~i~~~-~----- 173 (395)
.|.++|.+. .+....++.-..+ +++++++++.||+++. .++.|.+++..... ....+... .
T Consensus 48 ~v~v~D~~t-~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~--~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDAGS-GSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEECCC-CeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc--EEEEEECCCcccccc
Confidence 667888876 4444445544567 9999999999999984 35678888886432 22333322 0
Q ss_pred CCCcceEEEecCCCeEEEEeCC-CCeEEEEECCCCceEEE-EecC-----------------------------------
Q psy13629 174 LITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVL-YWED----------------------------------- 216 (395)
Q Consensus 174 ~~~p~glAVD~~~~~LYwtd~~-~~~I~v~~ldg~~~~~l-~~~~----------------------------------- 216 (395)
...|.++++++.++.||+++.. .++|.+.| ++...... +...
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~ 202 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG 202 (373)
T ss_pred CCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEE
Confidence 2569999999999999999865 57788887 54322211 1000
Q ss_pred ------------------------------------------------------------CCCcee---EEEeCCCCeEE
Q psy13629 217 ------------------------------------------------------------IDQPRA---IALVPQDSIMF 233 (395)
Q Consensus 217 ------------------------------------------------------------~~~P~~---iavdp~~g~LY 233 (395)
...|.+ ++++|+.++||
T Consensus 203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence 001333 67788778888
Q ss_pred EEeeC--------CCCeEEEEecCCCCcceEEEEecCCcCceeEEEecccc-EEEEeccceeeeeeeccccceeee
Q psy13629 234 WTDWG--------EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR-LLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 234 wtd~~--------~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~-rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
++.-. ....|..+++......+++.+ -..|.+|+++.+++ ++|.++...+.|.++|........
T Consensus 283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred EEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence 86421 134688888775211122221 22699999999988 899998888999999987655543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=98.75 E-value=8.8e-07 Score=85.67 Aligned_cols=167 Identities=14% Similarity=0.092 Sum_probs=115.6
Q ss_pred CCCCCeEEEEEEcC---CCEEEEEE--CCCCeEEEEEccCC-----CCCceEEEEe----CCCCCcceEEEecCCCeEEE
Q psy13629 126 KDLEEGAAIDYYYK---KSMVCWTD--HGTEMISCCTFDGN-----NVGSKHNVIT----NGLITPDGLAIDWLTEKLYW 191 (395)
Q Consensus 126 ~~~~~~~gl~~d~~---~~~lywsd--~~~~~I~~~~~dg~-----~~~~~~~i~~----~~~~~p~glAVD~~~~~LYw 191 (395)
.....+.||+++++ ++.||++. ...++|.|+.+++. .+...++++. ........|++++ .++||+
T Consensus 77 ~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyv 155 (347)
T 3das_A 77 SGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYA 155 (347)
T ss_dssp BTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEE
T ss_pred cCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEE
Confidence 34677899999985 78899864 35679999999872 2223444443 2345677899998 679999
Q ss_pred EeC-------------CCCeEEEEECCCC--------ceEEEEecCCCCceeEEEeCCCCeEEEEeeCC--CCeEEEEec
Q psy13629 192 TDS-------------ETNKLEVSSLDGK--------KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE--VPKIERGAM 248 (395)
Q Consensus 192 td~-------------~~~~I~v~~ldg~--------~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~--~~~I~~~~~ 248 (395)
+.. ..++|.+++.+|+ ..+ +...++.+|.||++|| .|.||++|.+. ...|.++..
T Consensus 156 t~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~-i~a~G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~ 233 (347)
T 3das_A 156 GTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSP-VYSYGHRNVQGLAWDD-KQRLFASEFGQDTWDELNAIKP 233 (347)
T ss_dssp ECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCC-EEEBCCSBCCEEEECT-TCCEEEEECCSSSCEEEEEECT
T ss_pred EECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCe-EEeeCCCCcceEEECC-CCCEEEEecCCCCCceeeEEcC
Confidence 952 3689999999997 333 4557899999999999 69999999652 234555432
Q ss_pred CCCC-------c-------ceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 249 NGDP-------R-------HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 249 dG~~-------~-------~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
-+.- . ............|.||++. ++.+|.++.+..+|.++.+++..
T Consensus 234 G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~~~ 294 (347)
T 3das_A 234 GDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGLRGERLWRIPLKGTA 294 (347)
T ss_dssp TCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEESTTCSEEEEEEETTE
T ss_pred CCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeeccccCCEEEEEEecCCc
Confidence 2100 0 0001111112368899997 68999999888899888887654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=6.1e-07 Score=87.65 Aligned_cols=185 Identities=4% Similarity=-0.173 Sum_probs=124.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC---------CCCeEEEEEccCCCCCceEEEEeCC------
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH---------GTEMISCCTFDGNNVGSKHNVITNG------ 173 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~---------~~~~I~~~~~dg~~~~~~~~i~~~~------ 173 (395)
.+.++|.+. .+....++.-..| +++++++++++|+++. .++.|..++..... ...++...+
T Consensus 47 ~vsvID~~t-~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--vv~~I~v~~~~~~~~ 122 (368)
T 1mda_H 47 ENWVSCAGC-GVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTT-TEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCCB
T ss_pred eEEEEECCC-CeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--EEEEEECCCcccccc
Confidence 667888877 5555555555667 9999999999999983 35789999988653 334444431
Q ss_pred CCCcceEEEecCCCeEEEEeCC-CCeEEE--EECCC---------------------------Cc------------eE-
Q psy13629 174 LITPDGLAIDWLTEKLYWTDSE-TNKLEV--SSLDG---------------------------KK------------RK- 210 (395)
Q Consensus 174 ~~~p~glAVD~~~~~LYwtd~~-~~~I~v--~~ldg---------------------------~~------------~~- 210 (395)
...|.++++++.++.||+++.. .+.+.+ .|+.. +. .+
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v 202 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeE
Confidence 2579999999999999999865 456666 44311 00 00
Q ss_pred -------------------------------EEEec--------------------CCCCcee---EEEeCCCCeEEEEe
Q psy13629 211 -------------------------------VLYWE--------------------DIDQPRA---IALVPQDSIMFWTD 236 (395)
Q Consensus 211 -------------------------------~l~~~--------------------~~~~P~~---iavdp~~g~LYwtd 236 (395)
..+.. ....|.+ ++++|+.++||++.
T Consensus 203 ~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~ 282 (368)
T 1mda_H 203 GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282 (368)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred EEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence 00000 0012444 88999999999987
Q ss_pred e-C-C-----CCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEecc-ceeeeeeeccccceeee
Q psy13629 237 W-G-E-----VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDG-RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 237 ~-~-~-----~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~-~~~~I~~~~~dG~~~~~ 300 (395)
+ . . ...+..+++.....-+++.+.. .|.||+++.+++++|++.. ..+.|+++|........
T Consensus 283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred ccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 5 2 2 2345578876521222222332 5999999988889999998 79999999987665554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-06 Score=87.98 Aligned_cols=184 Identities=9% Similarity=-0.096 Sum_probs=132.2
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEcc-CCCCCceEEEEeCCCCCcceEEEe---
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-GNNVGSKHNVITNGLITPDGLAID--- 183 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~d-g~~~~~~~~i~~~~~~~p~glAVD--- 183 (395)
+.|.++|.+. .+....++....+.+++++++++.+|.++ .++.|..+++. .+. .....+. ....|.+++++
T Consensus 177 ~~V~viD~~t-~~v~~~i~~g~~p~~v~~SpDGr~lyv~~-~dg~V~viD~~~~t~-~~v~~i~--~G~~P~~ia~s~~~ 251 (567)
T 1qks_A 177 GQIALIDGST-YEIKTVLDTGYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEP-TTVAEIK--IGSEARSIETSKME 251 (567)
T ss_dssp TEEEEEETTT-CCEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSC-CEEEEEE--CCSEEEEEEECCST
T ss_pred CeEEEEECCC-CeEEEEEeCCCCccceEECCCCCEEEEEc-CCCeEEEEECCCCCC-cEeEEEe--cCCCCceeEEcccc
Confidence 3788899876 44444455556788999999999999998 57899999995 221 1122222 23479999999
Q ss_pred -cCCCeEEEEeCCCCeEEEEECCCCceEEEEecC-----------CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCC
Q psy13629 184 -WLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED-----------IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGD 251 (395)
Q Consensus 184 -~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~-----------~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~ 251 (395)
+.++.+|+++...++|.++|.........+... ...+.+|+.++.+..++++. .+..+|..++....
T Consensus 252 ~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 252 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-KETGKILLVDYTDL 330 (567)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-TTTTEEEEEETTCS
T ss_pred CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-cCCCeEEEEecCCC
Confidence 588999999999999999997765554444321 11456888888777777666 55788999998652
Q ss_pred CcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 252 PRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 252 ~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
.+..+..-..-..|+++.+|.+++++|+++...++|.++|......
T Consensus 331 -~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 331 -NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp -SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred -ccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 1111111122347999999999999999999999999999875543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=9.8e-07 Score=85.12 Aligned_cols=161 Identities=14% Similarity=0.009 Sum_probs=108.9
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEcc-CCCCCceEEEEe-CCCCCcceEEEecCCCeE--EEEe-------C-
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD-GNNVGSKHNVIT-NGLITPDGLAIDWLTEKL--YWTD-------S- 194 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~d-g~~~~~~~~i~~-~~~~~p~glAVD~~~~~L--Ywtd-------~- 194 (395)
....+.+++++++++.||.++.. .|..++++ .. ....+.. .....|.++++++.++.| |.++ .
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~--~v~~~~~~~~g---~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK--KWSSFAVKSPT---EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT--EEEEEEEEETT---EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc--eEEEEEECCCC---CEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccc
Confidence 44578899999999999999865 78888875 32 2221211 111358889999877643 4443 1
Q ss_pred ----CCCeEEEEECC--CCceEEEEe---cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC-CCCcceEE-EEe--c
Q psy13629 195 ----ETNKLEVSSLD--GKKRKVLYW---EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN-GDPRHRKV-IVD--S 261 (395)
Q Consensus 195 ----~~~~I~v~~ld--g~~~~~l~~---~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d-G~~~~~~~-lv~--~ 261 (395)
..+.+.+++++ |+....+.. .....|.+++++|+.++||.++.+ ..+|...+++ .. .-..+ -+. .
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~-~~~v~~~~~~~~g-~~~~~~~~~~~~ 190 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-ANKLWTHRKLASG-EVELVGSVDAPD 190 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TTEEEEEEECTTS-CEEEEEEEECSS
T ss_pred eeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC-CCEEEEEEECCCC-CEEEeeeEecCC
Confidence 46778888875 443322221 245789999999999999999955 5688888886 21 21111 112 1
Q ss_pred CCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+...|.++++++++++||+++...+.|...+++
T Consensus 191 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 135699999999999999998777788776654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-06 Score=84.90 Aligned_cols=169 Identities=9% Similarity=0.064 Sum_probs=113.3
Q ss_pred EEEEeeCCCCCccEEecCC--CCC--eEEEEEEcCCCEEEEEECC------------------CCeEEEEEccCCCCCce
Q psy13629 109 DIRIANLSRPLKPVTIIKD--LEE--GAAIDYYYKKSMVCWTDHG------------------TEMISCCTFDGNNVGSK 166 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~--~~~--~~gl~~d~~~~~lywsd~~------------------~~~I~~~~~dg~~~~~~ 166 (395)
.|.++|... .+..-..+. ... ++.+-|.+..+.+|.++++ .++|..++++... ..
T Consensus 165 ~v~vlD~~T-~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~ 241 (462)
T 2ece_A 165 GILMLDHYS-FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RI 241 (462)
T ss_dssp EEEEECTTT-CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EE
T ss_pred eEEEEECCC-CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc--Ee
Confidence 477777765 343333332 222 3346668899999998853 7899999998642 22
Q ss_pred EEEEeC-CCCCcceEEE--ecCCCeEEEEeC-----CCCeEEEEECCCCceE--EEE--ec-----C-----------CC
Q psy13629 167 HNVITN-GLITPDGLAI--DWLTEKLYWTDS-----ETNKLEVSSLDGKKRK--VLY--WE-----D-----------ID 218 (395)
Q Consensus 167 ~~i~~~-~~~~p~glAV--D~~~~~LYwtd~-----~~~~I~v~~ldg~~~~--~l~--~~-----~-----------~~ 218 (395)
.++-.. ....|.+|++ ++.++.+|++.. ..+.|.++..++..-. .++ .. . ..
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~ 321 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP 321 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCC
Confidence 333332 2246888877 998999999998 8889988776653211 111 11 0 25
Q ss_pred CceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCC----------------cCceeEEEeccccEEEEec
Q psy13629 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI----------------FWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 219 ~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~----------------~~P~glalD~~~~rLYwaD 282 (395)
.|.+|.++++.++||+++|+ ...|...+.+.. ...+.+-.-.. ++|.+|++++++++||+++
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg-~d~VavfdV~d~-~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWG-IGEVRQYDISNP-FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCEEECTTSCEEEEEETT-TTEEEEEECSST-TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ceeEEEECCCCCEEEEEeCC-CCEEEEEEecCC-CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 69999999999999999998 567888887421 22222211111 2699999999999999999
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.63 E-value=2.7e-06 Score=82.37 Aligned_cols=178 Identities=11% Similarity=0.069 Sum_probs=116.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEEC---------CCCeEEEEEccCCCCCceEEEEeC-----CC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDH---------GTEMISCCTFDGNNVGSKHNVITN-----GL 174 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~---------~~~~I~~~~~dg~~~~~~~~i~~~-----~~ 174 (395)
.|.++|... .+.....+....+ +++++++++.||.++. .++.|..++.+... ....+... ..
T Consensus 32 ~v~v~D~~t-~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~--~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 32 RVHVYDYTN-GKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT--FEKEISLPPKRVQGL 107 (361)
T ss_dssp EEEEEETTT-CCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC--EEEEEEECTTBCCBC
T ss_pred eEEEEECCC-CeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc--EEEEEEcCccccccC
Confidence 677788765 3444444445667 9999999999999974 24568888876432 22333332 23
Q ss_pred CCcceEEEecCCCeEEEEeCC-CCeEEEEECCCCceEEE---------------------------------Eec-----
Q psy13629 175 ITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVL---------------------------------YWE----- 215 (395)
Q Consensus 175 ~~p~glAVD~~~~~LYwtd~~-~~~I~v~~ldg~~~~~l---------------------------------~~~----- 215 (395)
..|.++++++.++.||.++.. .+.|.+.+++....... ...
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 579999999999999999865 56676666533211100 000
Q ss_pred -----------------------------------------C--------------------CCCcee---EEEeCCCCe
Q psy13629 216 -----------------------------------------D--------------------IDQPRA---IALVPQDSI 231 (395)
Q Consensus 216 -----------------------------------------~--------------------~~~P~~---iavdp~~g~ 231 (395)
. ...|.| ++++|+.++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ 267 (361)
T 2oiz_A 188 SQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR 267 (361)
T ss_dssp EEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE
T ss_pred eeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCe
Confidence 0 001333 788888889
Q ss_pred EEEEee--C-------CCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 232 MFWTDW--G-------EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 232 LYwtd~--~-------~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
+|++.. + ....|..+++.. .....-+..+ . |.+|++++++++||.++. +.|..+|....
T Consensus 268 lyv~~~~~~~~~~~~~~~~~v~viD~~t--~~~v~~i~~~-~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~ 335 (361)
T 2oiz_A 268 MYVFMHPDGKEGTHKFPAAEIWVMDTKT--KQRVARIPGR-D-ALSMTIDQQRNLMLTLDG--GNVNVYDISQP 335 (361)
T ss_dssp EEEEEESSCCTTCTTCCCSEEEEEETTT--TEEEEEEECT-T-CCEEEEETTTTEEEEECS--SCEEEEECSSS
T ss_pred EEEEEccCCCcccccCCCceEEEEECCC--CcEEEEEecC-C-eeEEEECCCCCEEEEeCC--CeEEEEECCCC
Confidence 998753 1 134788888765 2221112222 2 999999999999999996 88999987655
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=6.9e-06 Score=77.15 Aligned_cols=132 Identities=11% Similarity=-0.009 Sum_probs=91.5
Q ss_pred EEEEeeCCCCCccEEecCCCC--CeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CC-----CCCcceE
Q psy13629 109 DIRIANLSRPLKPVTIIKDLE--EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NG-----LITPDGL 180 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~--~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~-----~~~p~gl 180 (395)
.|.++++.. .+.....+... .+.++++++.++.+|.++..++.|..++++.. .....+. .. ...|.++
T Consensus 22 ~v~~~d~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~---~~~~~~~~~~~~~~~~~~~~~~ 97 (349)
T 1jmx_B 22 NLHVVDVAS-DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---KNTFHANLSSVPGEVGRSMYSF 97 (349)
T ss_dssp EEEEEETTT-TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEESCCSTTEEEECSSCE
T ss_pred eEEEEECCC-CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC---cEEEEEEcccccccccccccce
Confidence 778888876 33333333223 68899999999999999988899999999864 2222222 22 2348999
Q ss_pred EEecCCCeEEEEeCC-----------CCeEEEEECCCCc---eEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEE
Q psy13629 181 AIDWLTEKLYWTDSE-----------TNKLEVSSLDGKK---RKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERG 246 (395)
Q Consensus 181 AVD~~~~~LYwtd~~-----------~~~I~v~~ldg~~---~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~ 246 (395)
++++.++.||+++.. .+.|.+.++.+.. ..... .....+.+++++|++. ||+++ ..|...
T Consensus 98 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~----~~i~~~ 171 (349)
T 1jmx_B 98 AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAG----PDIYKM 171 (349)
T ss_dssp EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEES----SSEEEE
T ss_pred EECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-EEEcc----CcEEEE
Confidence 999999999999844 5799999987622 11222 2334688999999776 88864 227777
Q ss_pred ecCC
Q psy13629 247 AMNG 250 (395)
Q Consensus 247 ~~dG 250 (395)
+...
T Consensus 172 d~~~ 175 (349)
T 1jmx_B 172 DVKT 175 (349)
T ss_dssp CTTT
T ss_pred eCCC
Confidence 7654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-05 Score=76.87 Aligned_cols=183 Identities=15% Similarity=0.121 Sum_probs=123.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCC-------EEEEEECC--CCeEEEEEccCCCCCceEEE------EeCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKS-------MVCWTDHG--TEMISCCTFDGNNVGSKHNV------ITNG 173 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~-------~lywsd~~--~~~I~~~~~dg~~~~~~~~i------~~~~ 173 (395)
.+.+++++| ... ...+. ++++++++-+.-. .+|.++.. .++|..+.+|.... ....+ +...
T Consensus 51 gL~Vydl~G-~~l-~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~~~~~pv~t~ 126 (355)
T 3amr_A 51 GLVVYSLDG-KML-HSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMTDPDHPIATA 126 (355)
T ss_dssp EEEEEETTS-CEE-EEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECSCTTSCEECC
T ss_pred CEEEEcCCC-cEE-EEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeeccccccCcCCC
Confidence 788999977 333 33343 7888888776432 67999988 89999998864321 12222 1244
Q ss_pred CCCcceEEE--ecCCCe--EEEEeCCCCeEEEEEC----CCCceEEEEe--cCCCCceeEEEeCCCCeEEEEeeCCCCeE
Q psy13629 174 LITPDGLAI--DWLTEK--LYWTDSETNKLEVSSL----DGKKRKVLYW--EDIDQPRAIALVPQDSIMFWTDWGEVPKI 243 (395)
Q Consensus 174 ~~~p~glAV--D~~~~~--LYwtd~~~~~I~v~~l----dg~~~~~l~~--~~~~~P~~iavdp~~g~LYwtd~~~~~~I 243 (395)
+..|.||++ ++.++. +|.++.. +++..+.+ +|.....++. ....+|.+|++|+..++||++++. .-|
T Consensus 127 ~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd--~GI 203 (355)
T 3amr_A 127 INEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED--EAI 203 (355)
T ss_dssp CSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT--TEE
T ss_pred CCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc--ceE
Confidence 588999999 887774 7777765 78877665 2222222222 345789999999999999999965 449
Q ss_pred EEEecCCCCc-ceEEEEe---cCCc-CceeEEEeccc---cEEEEeccceeeeeeecccccee
Q psy13629 244 ERGAMNGDPR-HRKVIVD---STIF-WPNGIAIDFNN---RLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 244 ~~~~~dG~~~-~~~~lv~---~~~~-~P~glalD~~~---~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
++++.+.... .++++.. .++. .|.||+|.+.. ++|++++...++..+.+..+...
T Consensus 204 w~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~ 266 (355)
T 3amr_A 204 WKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNK 266 (355)
T ss_dssp EEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred EEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCc
Confidence 9999653211 2333322 2233 79999997433 48999999999888888765433
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-06 Score=89.03 Aligned_cols=179 Identities=11% Similarity=0.036 Sum_probs=125.3
Q ss_pred EEEEeeCCCCCccEE--ecCCCCCeEEEEE-E-cCCCEEEEEE-----------------CCCCeEEEEEccCCCCCceE
Q psy13629 109 DIRIANLSRPLKPVT--IIKDLEEGAAIDY-Y-YKKSMVCWTD-----------------HGTEMISCCTFDGNNVGSKH 167 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~--~~~~~~~~~gl~~-d-~~~~~lywsd-----------------~~~~~I~~~~~dg~~~~~~~ 167 (395)
.|.++|++. .+... .+++...+.|+++ . +++++||+++ ...+.+..++.+... -..
T Consensus 113 rVavIdl~t-~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~--v~~ 189 (595)
T 1fwx_A 113 RVARVRCDV-MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE--VAW 189 (595)
T ss_dssp EEEEEETTT-TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE--EEE
T ss_pred EEEEEECCC-ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCe--EEE
Confidence 689999987 44333 4566788999998 4 8999999995 223467777777531 122
Q ss_pred EEEeCCCCCcceEEEecCCCeEEEEeCCC-------------------------------------CeEEEEECCC--Cc
Q psy13629 168 NVITNGLITPDGLAIDWLTEKLYWTDSET-------------------------------------NKLEVSSLDG--KK 208 (395)
Q Consensus 168 ~i~~~~~~~p~glAVD~~~~~LYwtd~~~-------------------------------------~~I~v~~ldg--~~ 208 (395)
.+...+ .|.++++++.++.+|+|+... +.+.|.|... ..
T Consensus 190 qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~ 267 (595)
T 1fwx_A 190 QVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASS 267 (595)
T ss_dssp EEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCC
T ss_pred EEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCc
Confidence 333333 799999999999999999654 1255555553 11
Q ss_pred e-EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCC-------Ccce-EEEEecC-CcCceeEEEeccccEE
Q psy13629 209 R-KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGD-------PRHR-KVIVDST-IFWPNGIAIDFNNRLL 278 (395)
Q Consensus 209 ~-~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~-------~~~~-~~lv~~~-~~~P~glalD~~~~rL 278 (395)
. ...+ ....+|.|+.++|+++++|+++.+ .+.|..++.+.. ...+ .+...-. -..|.++++|.++ ++
T Consensus 268 ~~~~~I-pvg~~PhGv~~sPDGk~v~V~~~~-s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~a 344 (595)
T 1fwx_A 268 LFTRYI-PIANNPHGCNMAPDKKHLCVAGKL-SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NA 344 (595)
T ss_dssp SSEEEE-EEESSCCCEEECTTSSEEEEECTT-SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EE
T ss_pred eeEEEE-ecCCCceEEEEcCCCCEEEEeCCC-CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eE
Confidence 1 1222 234689999999999999999954 788999998741 0001 1222211 2369999999877 99
Q ss_pred EEeccceeeeeeecccc
Q psy13629 279 YWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 279 YwaD~~~~~I~~~~~dG 295 (395)
|.+..-++.|.+.+++.
T Consensus 345 Y~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 345 YTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEETTTTEEEEEEHHH
T ss_pred EEEEecCCcEEEEEhhH
Confidence 99999889998888876
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-05 Score=81.22 Aligned_cols=190 Identities=13% Similarity=0.038 Sum_probs=130.2
Q ss_pred ccCCCCcee------EEEEEeeC--CCCCccEEecCCCCCeEEEEEEc----CCCEEEEEECCCCeEEEEEccCCCCCce
Q psy13629 99 KLQPDGAYL------LDIRIANL--SRPLKPVTIIKDLEEGAAIDYYY----KKSMVCWTDHGTEMISCCTFDGNNVGSK 166 (395)
Q Consensus 99 ~~~~~~~~~------~~I~~~~l--~~~~~~~~~~~~~~~~~gl~~d~----~~~~lywsd~~~~~I~~~~~dg~~~~~~ 166 (395)
..++++.++ ..|.++++ .. .+....++....+.+++|++ +++.||.++...+.|..++..... ..
T Consensus 185 ~~spdg~~l~v~~~d~~V~v~D~~~~t-~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~--~~ 261 (543)
T 1nir_A 185 RMSASGRYLLVIGRDARIDMIDLWAKE-PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE--PK 261 (543)
T ss_dssp EECTTSCEEEEEETTSEEEEEETTSSS-CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC--EE
T ss_pred EECCCCCEEEEECCCCeEEEEECcCCC-CcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc--cc
Confidence 455665443 36888998 33 34444445567799999999 999999999778899888766432 22
Q ss_pred EEEEeCC----------CCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCce-E-EEEecCCCCceeEEEeCCCCeEEE
Q psy13629 167 HNVITNG----------LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR-K-VLYWEDIDQPRAIALVPQDSIMFW 234 (395)
Q Consensus 167 ~~i~~~~----------~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~-~-~l~~~~~~~P~~iavdp~~g~LYw 234 (395)
.++...+ -..+.++++.+.++.+|++....++|.+.+...... . ..+ .....|++++++|..+++|.
T Consensus 262 ~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~v 340 (543)
T 1nir_A 262 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMT 340 (543)
T ss_dssp EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEE
T ss_pred eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEE
Confidence 3332211 125778999998999999999999999999876432 2 233 34677999999999999999
Q ss_pred EeeCCCCeEEEEecCCCCcceEEEEec-CCcCc-eeEEE-eccccEEEEecc-ceeeeeeecccc
Q psy13629 235 TDWGEVPKIERGAMNGDPRHRKVIVDS-TIFWP-NGIAI-DFNNRLLYWIDG-RLTFIEVMDYDG 295 (395)
Q Consensus 235 td~~~~~~I~~~~~dG~~~~~~~lv~~-~~~~P-~glal-D~~~~rLYwaD~-~~~~I~~~~~dG 295 (395)
+... ..+|..++... ......+.. ...+| .|..+ ++..+++|++.. ..++|..++.+.
T Consensus 341 a~~~-~~~v~v~D~~t--g~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 341 AANN-SNKVAVIDSKD--RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEGG-GTEEEEEETTT--TEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EecC-CCeEEEEECCC--CeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence 8843 57888888865 222222221 11123 25554 556688888875 568898888765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-05 Score=74.40 Aligned_cols=149 Identities=11% Similarity=-0.043 Sum_probs=103.4
Q ss_pred EEEEEECCCCeEEEEEccCCCCCceEEEEeCCCC-CcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecC----
Q psy13629 142 MVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLI-TPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED---- 216 (395)
Q Consensus 142 ~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~-~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~---- 216 (395)
.++++...++.|..+++.... ....+...... .|.++++++.++.+|+++...+.|.+.++.+......+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMA--VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE--EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcCCCCeEEEEECCCCc--EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 356666677888888887541 11222222212 59999999988899999988899999999766554434221
Q ss_pred -CCCceeEEEeCCCCeEEEEeeC----------CCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 217 -IDQPRAIALVPQDSIMFWTDWG----------EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 217 -~~~P~~iavdp~~g~LYwtd~~----------~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
...|.+++++|.+++||+++.+ ....|...++++ ......+.. -..|.++++++++++||+++
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~--- 153 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET--LSRRKAFEA-PRQITMLAWARDGSKLYGLG--- 153 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT--TEEEEEEEC-CSSCCCEEECTTSSCEEEES---
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC--CcEEEEEeC-CCCcceeEECCCCCEEEEeC---
Confidence 1279999999999999999521 257899999876 222222222 24689999998888999994
Q ss_pred eeeeeecccccee
Q psy13629 286 TFIEVMDYDGYVR 298 (395)
Q Consensus 286 ~~I~~~~~dG~~~ 298 (395)
+.|...++++...
T Consensus 154 ~~i~~~d~~~~~~ 166 (337)
T 1pby_B 154 RDLHVMDPEAGTL 166 (337)
T ss_dssp SSEEEEETTTTEE
T ss_pred CeEEEEECCCCcE
Confidence 5677777765443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-05 Score=77.60 Aligned_cols=182 Identities=9% Similarity=0.088 Sum_probs=129.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC--CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG--TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~--~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|++.++.+ .+...+........+++|+++++.|+++... ...|+.+++++. .. ..+.........++..+.+
T Consensus 204 ~i~~~d~~t-g~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~---~~-~~l~~~~~~~~~~~~spdg 278 (415)
T 2hqs_A 204 ALVIQTLAN-GAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG---QI-RQVTDGRSNNTEPTWFPDS 278 (415)
T ss_dssp EEEEEETTT-CCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CE-EECCCCSSCEEEEEECTTS
T ss_pred EEEEEECCC-CcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC---CE-EeCcCCCCcccceEECCCC
Confidence 688888876 4444555555678899999999999987644 346999998865 22 2333333456788888888
Q ss_pred CeEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++... ..+|++.++++.....+. ........++++|+.++|+++... ....|...++++ ...+.+...
T Consensus 279 ~~l~~~s~~~g~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~--~~~~~l~~~-- 353 (415)
T 2hqs_A 279 QNLAFTSDQAGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--GGVQVLSST-- 353 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT--CCEEECCCS--
T ss_pred CEEEEEECCCCCcEEEEEECCCCCEEEEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC--CCEEEecCC--
Confidence 888887643 348999999887655543 334567789999999999888743 246899999987 344433332
Q ss_pred cCceeEEEeccccEEEEeccce--eeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRL--TFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~--~~I~~~~~dG~~~~~ 300 (395)
.....+++.++++.|+++.... ..|+.++++|.....
T Consensus 354 ~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~ 392 (415)
T 2hqs_A 354 FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR 392 (415)
T ss_dssp SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEE
Confidence 2678899998888888876433 378899988776544
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.6e-05 Score=75.73 Aligned_cols=183 Identities=10% Similarity=0.075 Sum_probs=131.4
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC--CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~--~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
..|+++++++ .....+........+++|+++++.|+++.... ..|+..++++. .... +.........+++.+.
T Consensus 159 ~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg---~~~~-l~~~~~~~~~~~~spd 233 (415)
T 2hqs_A 159 YELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AVRQ-VASFPRHNGAPAFSPD 233 (415)
T ss_dssp EEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CEEE-EECCSSCEEEEEECTT
T ss_pred ceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---cEEE-eecCCCcccCEEEcCC
Confidence 5788889887 45555555667889999999999999887543 58999999865 3333 3333446778999998
Q ss_pred CCeEEEEeCC--CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEee-CCCCeEEEEecCCCCcceEEEEecC
Q psy13629 186 TEKLYWTDSE--TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW-GEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 186 ~~~LYwtd~~--~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~-~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
++.|+++... ...|++.++++.....+. ........++++|++.+|+++.. ....+|++.++++ ...+.+. .+
T Consensus 234 g~~la~~~~~~g~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~--~~~~~l~-~~ 309 (415)
T 2hqs_A 234 GSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQRIT-WE 309 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCEECC-CS
T ss_pred CCEEEEEEecCCCceEEEEECCCCCEEeCc-CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC--CCEEEEe-cC
Confidence 8889887643 456999999887665544 44456788999999888887763 2456899999987 3333332 23
Q ss_pred CcCceeEEEeccccEEEEeccc--eeeeeeeccccceee
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVRL 299 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~~ 299 (395)
......++++++++.|+++... ...|...++++....
T Consensus 310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence 3456678899899999888653 467888888765543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.42 E-value=5.1e-06 Score=85.23 Aligned_cols=152 Identities=9% Similarity=0.021 Sum_probs=109.9
Q ss_pred CCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEE-e-cCCCeEEEEe-----------------CCCCeE
Q psy13629 139 KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAI-D-WLTEKLYWTD-----------------SETNKL 199 (395)
Q Consensus 139 ~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAV-D-~~~~~LYwtd-----------------~~~~~I 199 (395)
+++.||+.|..+++|.|++++.-. ....+.......|+|+++ . +.++.+|.++ ...+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~--~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMK--CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTE--EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCce--EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 578999999999999999999752 122233344578999998 4 7899999995 344588
Q ss_pred EEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCC------------------------------------CeE
Q psy13629 200 EVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEV------------------------------------PKI 243 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~------------------------------------~~I 243 (395)
.+.|.+.....-.+.-+. +|.+++++|+.+++|+|..... ..|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999988755443332223 8999999999999999985421 124
Q ss_pred EEEecCC--CCc-ceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 244 ERGAMNG--DPR-HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 244 ~~~~~dG--~~~-~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
..++... ... .+.+-+.. .|+|+.++++++++|+++...++|.+++++..
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred EEEeCcccCCceeEEEEecCC---CceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 4444432 001 12222332 69999999999999999999999999998854
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-05 Score=76.66 Aligned_cols=146 Identities=8% Similarity=-0.073 Sum_probs=97.5
Q ss_pred cCCCEEEEEEC-CCC---eEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeC---------CCCeEEEEEC
Q psy13629 138 YKKSMVCWTDH-GTE---MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS---------ETNKLEVSSL 204 (395)
Q Consensus 138 ~~~~~lywsd~-~~~---~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~---------~~~~I~v~~l 204 (395)
+..+.+|.+|. ..+ .|.+++.+... ....+. ....| ++++++.++.||+++. ..+.|.++|.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~---~~~~i~-~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGS---ILGHVN-GGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCe---EEEEec-CCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 55678999886 444 77888887542 122222 23457 9999999999999984 3567999998
Q ss_pred CCCceEEEEecC-------CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccE
Q psy13629 205 DGKKRKVLYWED-------IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRL 277 (395)
Q Consensus 205 dg~~~~~l~~~~-------~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~r 277 (395)
.......-+... ...|++++++|+.++||+++......|..++ +. .+ .+.. -+..|.++.+...+++
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t---~~-~~~~-~i~~~~~~~~~~~~~~ 178 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG---GS-SDDQ-LLSSPTCYHIHPGAPS 178 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC---CC-EEeE-EcCCCceEEEEeCCCc
Confidence 754433222111 3579999999999999999854457899998 65 22 1111 0223455556556677
Q ss_pred EEEeccceeeeeeeccc
Q psy13629 278 LYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 278 LYwaD~~~~~I~~~~~d 294 (395)
.|++....+++..++.+
T Consensus 179 ~~~~~~~dg~~~~vd~~ 195 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDHA 195 (373)
T ss_pred eEEEEcCCCCEEEEECC
Confidence 78877777777666663
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.41 E-value=5e-06 Score=82.64 Aligned_cols=108 Identities=10% Similarity=-0.085 Sum_probs=81.1
Q ss_pred cCCCEEEEEECCC----CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeC---------CCCeEEEEEC
Q psy13629 138 YKKSMVCWTDHGT----EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS---------ETNKLEVSSL 204 (395)
Q Consensus 138 ~~~~~lywsd~~~----~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~---------~~~~I~v~~l 204 (395)
+..+++|+++... +.|.+++.+... ...++-. ...| |+++++.++.||+++. ..+.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~--vv~~I~v--G~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGR--ILGMTDG--GFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTE--EEEEEEE--CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCE--EEEEEEC--CCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 3568899999765 789999988652 1222332 2468 9999999999999985 3568999998
Q ss_pred CCCceEEEEe-c------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 205 DGKKRKVLYW-E------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 205 dg~~~~~l~~-~------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
.......-+. . ....|.+++++|+.++||++++.....|..+++..
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t 209 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG 209 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence 7765543222 2 14679999999999999999865567899999876
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=98.41 E-value=6.2e-06 Score=82.74 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=80.2
Q ss_pred EEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEe--cC------CCCceeEEEeCC---CCeEEEE
Q psy13629 167 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW--ED------IDQPRAIALVPQ---DSIMFWT 235 (395)
Q Consensus 167 ~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~--~~------~~~P~~iavdp~---~g~LYwt 235 (395)
.+++..++..|.+|++++ .++||+++...++|.+.+.++.....+.. .. ...+.|||++|+ +++||++
T Consensus 19 ~~~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 19 KKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp EEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred EEEEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 445567799999999998 57899999877789999875333333321 21 234559999998 9999999
Q ss_pred eeC-------C----CCeEEEEecCCC---CcceEEEEe----cCCcCceeEEEeccccEEEEec
Q psy13629 236 DWG-------E----VPKIERGAMNGD---PRHRKVIVD----STIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 236 d~~-------~----~~~I~~~~~dG~---~~~~~~lv~----~~~~~P~glalD~~~~rLYwaD 282 (395)
+.. . ..+|.|+..++. ....++++. ...+++++|+++.+ ++||++.
T Consensus 98 ~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pD-G~Lyv~~ 161 (454)
T 1cru_A 98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPD-QKIYYTI 161 (454)
T ss_dssp EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTT-SCEEEEE
T ss_pred EeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCC-CeEEEEE
Confidence 852 0 358999998652 123445553 23467999999964 5799983
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-05 Score=73.69 Aligned_cols=158 Identities=10% Similarity=-0.048 Sum_probs=107.0
Q ss_pred EEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEE
Q psy13629 133 AIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL 212 (395)
Q Consensus 133 gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l 212 (395)
|+++.. ++.+|.+...++.|.+++.+... ....+.......|.++++++.++.+|+++...+.|.+.++++......
T Consensus 4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKA-GHEYMIVTNYPNNLHVVDVASDT--VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTTTE--EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccC-CCEEEEEeCCCCeEEEEECCCCc--EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 455553 57789998889999999987642 122232222236999999998888999998889999999987655544
Q ss_pred EecC------CCCceeEEEeCCCCeEEEEeeC----------CCCeEEEEecCCCCcceEEEEecCCcCceeEEEecccc
Q psy13629 213 YWED------IDQPRAIALVPQDSIMFWTDWG----------EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR 276 (395)
Q Consensus 213 ~~~~------~~~P~~iavdp~~g~LYwtd~~----------~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~ 276 (395)
+... ...|.+++++|++++||++... ....|...+++.......+.....-..+.+++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 4221 2348999999999999998732 13688888886411111111112223578889997776
Q ss_pred EEEEeccceeeeeeeccccce
Q psy13629 277 LLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 277 rLYwaD~~~~~I~~~~~dG~~ 297 (395)
||+++. .|..++.....
T Consensus 161 -l~~~~~---~i~~~d~~~~~ 177 (349)
T 1jmx_B 161 -LYVAGP---DIYKMDVKTGK 177 (349)
T ss_dssp -EEEESS---SEEEECTTTCC
T ss_pred -EEEccC---cEEEEeCCCCc
Confidence 888653 37777765433
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-05 Score=78.06 Aligned_cols=131 Identities=10% Similarity=-0.011 Sum_probs=91.4
Q ss_pred ceeEEEEEeeCCCCCccEEecCCC---CCeEEEEE--EcCCCEEEEEEC-----CCCeEEEEEccCCCCCceEEEEeCC-
Q psy13629 105 AYLLDIRIANLSRPLKPVTIIKDL---EEGAAIDY--YYKKSMVCWTDH-----GTEMISCCTFDGNNVGSKHNVITNG- 173 (395)
Q Consensus 105 ~~~~~I~~~~l~~~~~~~~~~~~~---~~~~gl~~--d~~~~~lywsd~-----~~~~I~~~~~dg~~~~~~~~i~~~~- 173 (395)
.+.+.|.+++++. .+....++.. ..+..|.| ++.++.+|++.. .++.|.++..++......+++-...
T Consensus 225 ~~~d~V~v~D~~~-~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~ 303 (462)
T 2ece_A 225 RYGNRIHFWDLRK-RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAE 303 (462)
T ss_dssp HSCCEEEEEETTT-TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCE
T ss_pred ccCCEEEEEECCC-CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCc
Confidence 3457888899876 3333222221 35677766 999999999998 8889988888764222222221111
Q ss_pred ----------------CCCcceEEEecCCCeEEEEeCCCCeEEEEECC-CCceEE--EEecCC----------C----Cc
Q psy13629 174 ----------------LITPDGLAIDWLTEKLYWTDSETNKLEVSSLD-GKKRKV--LYWEDI----------D----QP 220 (395)
Q Consensus 174 ----------------~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld-g~~~~~--l~~~~~----------~----~P 220 (395)
...|.+|++...++.||+++...+.|.+++.+ ....+. .+..+. . .|
T Consensus 304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggP 383 (462)
T 2ece_A 304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAP 383 (462)
T ss_dssp ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCC
T ss_pred cccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCC
Confidence 25699999999999999999999999999985 322221 221221 1 59
Q ss_pred eeEEEeCCCCeEEEEe
Q psy13629 221 RAIALVPQDSIMFWTD 236 (395)
Q Consensus 221 ~~iavdp~~g~LYwtd 236 (395)
++++++|++++||+++
T Consensus 384 r~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 384 QMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSSEEEEEC
T ss_pred CEEEEcCCCCEEEEEc
Confidence 9999999999999998
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.3e-05 Score=68.15 Aligned_cols=181 Identities=13% Similarity=0.026 Sum_probs=124.6
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccC-CCCCceEEEEeCC-CCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDG-NNVGSKHNVITNG-LITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg-~~~~~~~~i~~~~-~~~p~glAVD~~ 185 (395)
..|+++++.+ .....+......+.+++|++.++.|+++. .+.|+.+++++ . ....+.... ...+.++++.+.
T Consensus 22 ~~i~~~d~~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 22 SSIEIFNIRT-RKMRVVWQTPELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDP---SPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp EEEEEEETTT-TEEEEEEEESSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCC---SCEECCCTTCCCBCSCCEECTT
T ss_pred eeEEEEeCCC-CceeeeccCCcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCC---CceEeccccccccccceEECCC
Confidence 5778888876 44445555567789999999999888875 67999999987 5 223333222 245788999998
Q ss_pred CCeEEEEeCC---CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEec
Q psy13629 186 TEKLYWTDSE---TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 186 ~~~LYwtd~~---~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
++.|+++... ...|...++++.....+. .......++++|++.+|+++... ...+|+.++.++ ...+ .+..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~-~~~~ 170 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GVET-RLTH 170 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CCEE-ECCC
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECCC--Ccce-Eccc
Confidence 8889888732 578999998877655443 23348889999999988866533 334677777766 3333 3333
Q ss_pred CCcCceeEEEeccccEEEEec--cceeeeeeeccccceee
Q psy13629 262 TIFWPNGIAIDFNNRLLYWID--GRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD--~~~~~I~~~~~dG~~~~ 299 (395)
....+..++++++++.|+++. .....|+.++.++....
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~ 210 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE 210 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence 344678899998888888774 34456666665554443
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=98.33 E-value=7.5e-06 Score=82.30 Aligned_cols=162 Identities=13% Similarity=0.099 Sum_probs=111.2
Q ss_pred CccEEecCCCCCeEEEEEEcCCC-EEEEEECCCCeEEEEEccCCCCCc-eEE---EEeCC-----CCCcceEEEecC---
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKS-MVCWTDHGTEMISCCTFDGNNVGS-KHN---VITNG-----LITPDGLAIDWL--- 185 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~-~lywsd~~~~~I~~~~~dg~~~~~-~~~---i~~~~-----~~~p~glAVD~~--- 185 (395)
..++.++..+..|.+|+|.+++. +||+++ ..++|++++.+|..... ... ++..+ ...+-|||+++.
T Consensus 4 f~v~~va~gL~~P~~~a~~pdG~~rl~V~e-r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~ 82 (463)
T 2wg3_C 4 FCIQEVVSGLRQPVGALHSGDGSQRLFILE-KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKK 82 (463)
T ss_dssp EEEEEEEEEESSEEEEECCSSSSCCEEEEE-TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHH
T ss_pred eEEEEeccCCCCceEEEECCCCCeEEEEEe-CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcC
Confidence 34567778899999999999885 799998 56889998776642100 111 11111 345778999985
Q ss_pred CCeEEEEeCC--C----------CeEEEEECCCC--------ceEEEEe----cCCCCceeEEEeCCCCeEEEEeeCC--
Q psy13629 186 TEKLYWTDSE--T----------NKLEVSSLDGK--------KRKVLYW----EDIDQPRAIALVPQDSIMFWTDWGE-- 239 (395)
Q Consensus 186 ~~~LYwtd~~--~----------~~I~v~~ldg~--------~~~~l~~----~~~~~P~~iavdp~~g~LYwtd~~~-- 239 (395)
++.||++... . .+|.++.++.. ..++++. ...+....|+++| .|+||++- |+
T Consensus 83 n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~-Gd~~ 160 (463)
T 2wg3_C 83 NGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIIL-GDGM 160 (463)
T ss_dssp HCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEE-CCTT
T ss_pred CCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEe-CCCC
Confidence 6889988532 1 47888887531 2344443 2356778899999 56999995 31
Q ss_pred ---------------CCeEEEEecCCCC------c-----------ceEEEEecCCcCceeEEEecccc------EEEEe
Q psy13629 240 ---------------VPKIERGAMNGDP------R-----------HRKVIVDSTIFWPNGIAIDFNNR------LLYWI 281 (395)
Q Consensus 240 ---------------~~~I~~~~~dG~~------~-----------~~~~lv~~~~~~P~glalD~~~~------rLYwa 281 (395)
..+|.|++.||.. . .+..+....+..|.||++|...+ ++|.+
T Consensus 161 ~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~ 240 (463)
T 2wg3_C 161 ITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCS 240 (463)
T ss_dssp CCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEE
T ss_pred CCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEec
Confidence 3689999999920 0 13356777889999999997633 78888
Q ss_pred cc
Q psy13629 282 DG 283 (395)
Q Consensus 282 D~ 283 (395)
|.
T Consensus 241 D~ 242 (463)
T 2wg3_C 241 DS 242 (463)
T ss_dssp CC
T ss_pred cc
Confidence 85
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.26 E-value=9.2e-06 Score=79.62 Aligned_cols=116 Identities=9% Similarity=-0.011 Sum_probs=86.5
Q ss_pred ecCCCeEEEEeCC----CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC--------CCCeEEEEecCC
Q psy13629 183 DWLTEKLYWTDSE----TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG--------EVPKIERGAMNG 250 (395)
Q Consensus 183 D~~~~~LYwtd~~----~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~--------~~~~I~~~~~dG 250 (395)
++..+.+|++|.. .++|.++|.+.......+ .....|. ++++|+.++||++++. ....|..++...
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I-~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-EECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEE-ECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 4678999999986 689999999876665555 3355685 9999999999999852 235688888876
Q ss_pred CCcceEEEEec-----CCcCceeEEEeccccEEEEeccc-eeeeeeeccccceeee
Q psy13629 251 DPRHRKVIVDS-----TIFWPNGIAIDFNNRLLYWIDGR-LTFIEVMDYDGYVRLV 300 (395)
Q Consensus 251 ~~~~~~~lv~~-----~~~~P~glalD~~~~rLYwaD~~-~~~I~~~~~dG~~~~~ 300 (395)
.....++.+.. ....|.+++++.++++||+++.. .+.|.++|........
T Consensus 119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~ 174 (386)
T 3sjl_D 119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 174 (386)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence 32223333322 02379999999999999999864 7899999987766544
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00022 Score=64.47 Aligned_cols=180 Identities=9% Similarity=0.001 Sum_probs=117.5
Q ss_pred EEEEeeCCCCCccEEecCC--CCCeEEEEEEcCCCEEEEEECC---CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 109 DIRIANLSRPLKPVTIIKD--LEEGAAIDYYYKKSMVCWTDHG---TEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~--~~~~~gl~~d~~~~~lywsd~~---~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
.|.++++.+......+... ...+..++|+++++.|+++... ...|+.++.++. ....+ .....+..+++.
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~---~~~~~--~~~~~~~~~~~s 137 (297)
T 2ojh_A 63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG---TPRLM--TKNLPSYWHGWS 137 (297)
T ss_dssp EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC---CCEEC--CSSSSEEEEEEC
T ss_pred eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC---ceEEe--ecCCCccceEEC
Confidence 6778887661223333332 2556789999999999998743 467888888765 22222 222347778888
Q ss_pred cCCCeEEEEeCCCC--eEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEee-CCCCeEEEEecCCCCcceEEEEe
Q psy13629 184 WLTEKLYWTDSETN--KLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW-GEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 184 ~~~~~LYwtd~~~~--~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~-~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
+.++.|+++....+ .|..+++++.....+. .....+..++++|.+.+|+++.. ....+|+.++.++ ...+.+ .
T Consensus 138 pdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~-~ 213 (297)
T 2ojh_A 138 PDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERI-T 213 (297)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETTTCCEEECC-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEEC-C
T ss_pred CCCCEEEEEECCCCceEEEEEECCCCcceEcc-cCCCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEE-e
Confidence 88888887765555 5666667666554443 44567899999999888888753 3467888888776 333333 2
Q ss_pred cCCcCceeEEEeccccEEEEeccc----------eeeeeeeccccce
Q psy13629 261 STIFWPNGIAIDFNNRLLYWIDGR----------LTFIEVMDYDGYV 297 (395)
Q Consensus 261 ~~~~~P~glalD~~~~rLYwaD~~----------~~~I~~~~~dG~~ 297 (395)
.+......++++++++.|+++... ...|...++++..
T Consensus 214 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 214 DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 333356678888888888877642 3567777766543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00044 Score=71.21 Aligned_cols=192 Identities=12% Similarity=0.002 Sum_probs=128.7
Q ss_pred ccCCCCcee------EEEEEeeCC-CCCccEEecCCCCCeEEEEEE----cCCCEEEEEECCCCeEEEEEccCCCCCceE
Q psy13629 99 KLQPDGAYL------LDIRIANLS-RPLKPVTIIKDLEEGAAIDYY----YKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167 (395)
Q Consensus 99 ~~~~~~~~~------~~I~~~~l~-~~~~~~~~~~~~~~~~gl~~d----~~~~~lywsd~~~~~I~~~~~dg~~~~~~~ 167 (395)
..++|+.++ ..|.++|+. .+.+....++.-..|.+++|+ ++++.+|.++...+.|..++..... ...
T Consensus 203 ~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~--~~~ 280 (567)
T 1qks_A 203 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKK 280 (567)
T ss_dssp EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc--EEE
Confidence 455665543 268889985 223444444455679999999 6999999999888999988765431 223
Q ss_pred EEEeCC----------CCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEE-EecCCCCceeEEEeCCCCeEEEEe
Q psy13629 168 NVITNG----------LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL-YWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 168 ~i~~~~----------~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l-~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
++...+ ...+.+|+....+..+|++....++|.+.+........+ .-.....|.++.++|+++++|+++
T Consensus 281 ~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 281 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred EEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEe
Confidence 333221 114567888777778888888899999999876432221 113456799999999999999999
Q ss_pred eCCCCeEEEEecCCCCcceEEEEec--CCcCc-eeEEE-eccccEEEEec-cceeeeeeecccc
Q psy13629 237 WGEVPKIERGAMNGDPRHRKVIVDS--TIFWP-NGIAI-DFNNRLLYWID-GRLTFIEVMDYDG 295 (395)
Q Consensus 237 ~~~~~~I~~~~~dG~~~~~~~lv~~--~~~~P-~glal-D~~~~rLYwaD-~~~~~I~~~~~dG 295 (395)
.+ ..+|..++... ......+.. ...+| .|..+ +...+++|++. ...+.|.+++.+.
T Consensus 361 ~~-sn~V~ViD~~t--~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 361 NA-RNKLVVIDTKE--GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp GG-GTEEEEEETTT--TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CC-CCeEEEEECCC--CcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 44 78899999875 222222222 22334 36654 65668887765 3568899998875
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=8.8e-06 Score=79.39 Aligned_cols=142 Identities=6% Similarity=-0.117 Sum_probs=96.0
Q ss_pred CCEEEEEECCCC----eEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeC---------CCCeEEEEECCC
Q psy13629 140 KSMVCWTDHGTE----MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS---------ETNKLEVSSLDG 206 (395)
Q Consensus 140 ~~~lywsd~~~~----~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~---------~~~~I~v~~ldg 206 (395)
.+++|+++...+ +|..++.+... ...++... ..| ++++++.++.+|+++. ..+.|.+.|+..
T Consensus 31 ~~~~yV~~~~~~~~~d~vsvID~~t~~--v~~~i~vG--~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T 105 (368)
T 1mda_H 31 SRRSHITLPAYFAGTTENWVSCAGCGV--TLGHSLGA--FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTE--EEEEEEEC--TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred CCeEEEECCccCCccceEEEEECCCCe--EEEEEeCC--CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 467999998777 77788877642 22233332 358 9999999999999983 367899999987
Q ss_pred CceEEEEecC-------CCCceeEEEeCCCCeEEEEeeCCCCeEEE--EecCCCCcceEEEEecCCcCceeEEEeccccE
Q psy13629 207 KKRKVLYWED-------IDQPRAIALVPQDSIMFWTDWGEVPKIER--GAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRL 277 (395)
Q Consensus 207 ~~~~~l~~~~-------~~~P~~iavdp~~g~LYwtd~~~~~~I~~--~~~dG~~~~~~~lv~~~~~~P~glalD~~~~r 277 (395)
.....-+.-. ...|++++++|++++||+++++....|.. ++... ...+- -|.+..+.+.+++
T Consensus 106 ~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~-----v~~~~~~~p~g~~ 176 (368)
T 1mda_H 106 FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTK-----SASCFHIHPGAAA 176 (368)
T ss_dssp CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEE-----CSSCCCCEEEETT
T ss_pred CCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEE-----CCCceEEccCCCe
Confidence 6654333211 36799999999999999999765566777 55542 12221 1222334445667
Q ss_pred EEEeccceeeeeeecccc
Q psy13629 278 LYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 278 LYwaD~~~~~I~~~~~dG 295 (395)
+|.+...++++..++++.
T Consensus 177 ~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 177 THYLGSCPASLAASDLAA 194 (368)
T ss_dssp EEECCCCTTSCEEEECCS
T ss_pred EEEEEcCCCCEEEEECcc
Confidence 777776677776666654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.16 E-value=4.7e-05 Score=74.54 Aligned_cols=111 Identities=11% Similarity=0.011 Sum_probs=82.3
Q ss_pred EEEcCCCEEEEEECC----CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeC---------CCCeEEE
Q psy13629 135 DYYYKKSMVCWTDHG----TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS---------ETNKLEV 201 (395)
Q Consensus 135 ~~d~~~~~lywsd~~----~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~---------~~~~I~v 201 (395)
...+.++++|++|.. .+.|.+++.+... ...++.. ...|. +++++.++.||+++. ..+.|.+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~--v~~~I~v--G~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDG--GFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEEE--CSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCe--EEEEEEC--CCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 346788999999986 6789999887642 1122322 23474 999999999999984 2567999
Q ss_pred EECCCCceEEEEe-cC------CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 202 SSLDGKKRKVLYW-ED------IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 202 ~~ldg~~~~~l~~-~~------~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
.|........-+. .. ...|++++++|+.++||+++......|..+++..
T Consensus 114 iD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t 169 (386)
T 3sjl_D 114 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG 169 (386)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred EECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC
Confidence 9998766543332 21 3589999999999999999854467899999876
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00036 Score=64.77 Aligned_cols=177 Identities=10% Similarity=-0.008 Sum_probs=115.2
Q ss_pred EEEEeeCCCCCccEEecCC-CCCeEEEEEEcCCCEEEEEECC-CCeEEEEEccCCCCCceEEEEeC-C----CCCcceEE
Q psy13629 109 DIRIANLSRPLKPVTIIKD-LEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHNVITN-G----LITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~-~~~~~gl~~d~~~~~lywsd~~-~~~I~~~~~dg~~~~~~~~i~~~-~----~~~p~glA 181 (395)
.|..++.++ .....+... .....+..+.++++. ++++.. .++|+.++.+|. ........ . ...|.+++
T Consensus 57 ~V~~~d~~G-~~~W~~~~~~~~~~~~~~~~~dG~~-lv~~~~~~~~v~~vd~~Gk---~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 57 GAKMITRDG-RELWNIAAPAGCEMQTARILPDGNA-LVAWCGHPSTILEVNMKGE---VLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp EEEEECTTS-CEEEEEECCTTCEEEEEEECTTSCE-EEEEESTTEEEEEECTTSC---EEEEEEECCSCSSGGGSCSCCE
T ss_pred CEEEECCCC-CEEEEEcCCCCccccccEECCCCCE-EEEecCCCCEEEEEeCCCC---EEEEEeccCCCCcccccccCce
Confidence 567777754 333333222 235667777776654 455555 778888888775 22222221 1 23577888
Q ss_pred EecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC-CCCcceEEEEe
Q psy13629 182 IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN-GDPRHRKVIVD 260 (395)
Q Consensus 182 VD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d-G~~~~~~~lv~ 260 (395)
++. ++++++++...++|..++.+|+..-..- ....|.++++.+ +|.+++++.. ..+|..++.+ | ...-.+-.
T Consensus 132 ~~~-~G~~lv~~~~~~~v~~~d~~G~~~w~~~--~~~~~~~~~~~~-~g~~~v~~~~-~~~v~~~d~~tG--~~~w~~~~ 204 (276)
T 3no2_A 132 KNK-KGNYLVPLFATSEVREIAPNGQLLNSVK--LSGTPFSSAFLD-NGDCLVACGD-AHCFVQLNLESN--RIVRRVNA 204 (276)
T ss_dssp ECT-TSCEEEEETTTTEEEEECTTSCEEEEEE--CSSCCCEEEECT-TSCEEEECBT-TSEEEEECTTTC--CEEEEEEG
T ss_pred ECC-CCCEEEEecCCCEEEEECCCCCEEEEEE--CCCCccceeEcC-CCCEEEEeCC-CCeEEEEeCcCC--cEEEEecC
Confidence 886 6778889999999999999987665554 235799999987 5667777744 5689999998 7 33333322
Q ss_pred c-----CCcCceeEEEeccccEEEEeccc----------eeeeeeecccccee
Q psy13629 261 S-----TIFWPNGIAIDFNNRLLYWIDGR----------LTFIEVMDYDGYVR 298 (395)
Q Consensus 261 ~-----~~~~P~glalD~~~~rLYwaD~~----------~~~I~~~~~dG~~~ 298 (395)
. .+.+|.+++++ .++++|+++.. ..++..++.+|...
T Consensus 205 ~~~~~~~l~~~~~~~~~-~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~ 256 (276)
T 3no2_A 205 NDIEGVQLFFVAQLFPL-QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVV 256 (276)
T ss_dssp GGSBSCCCSEEEEEEEC-TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEE
T ss_pred CCCCCccccccccceEc-CCCCEEEEeccCccccccccCCceEEEECCCCCEE
Confidence 2 24569999998 57789999842 23455666666543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00024 Score=66.03 Aligned_cols=179 Identities=12% Similarity=-0.037 Sum_probs=116.2
Q ss_pred EEEEEeeCCCCCccEEecCCC-CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDL-EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~-~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
..|.+++.............. ..+..+++++.++.++ + ..+.|+.++.+|. ....+-......+.+.++.+ +
T Consensus 15 ~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s--~~~~V~~~d~~G~---~~W~~~~~~~~~~~~~~~~~-d 87 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-S--YSKGAKMITRDGR---ELWNIAAPAGCEMQTARILP-D 87 (276)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-E--CBSEEEEECTTSC---EEEEEECCTTCEEEEEEECT-T
T ss_pred CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-e--CCCCEEEECCCCC---EEEEEcCCCCccccccEECC-C
Confidence 367778873312222222222 3678899998776555 4 3667888888764 22222222122455667765 6
Q ss_pred CeEEEEeCC-CCeEEEEECCCCceEEEEec-C----CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe
Q psy13629 187 EKLYWTDSE-TNKLEVSSLDGKKRKVLYWE-D----IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 187 ~~LYwtd~~-~~~I~v~~ldg~~~~~l~~~-~----~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
+++++++.. +++|..++.+|+....+-.. . ...|+++++++. |.+++++. ...+|...+.+| ...-. +.
T Consensus 88 G~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~-G~~lv~~~-~~~~v~~~d~~G--~~~w~-~~ 162 (276)
T 3no2_A 88 GNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKK-GNYLVPLF-ATSEVREIAPNG--QLLNS-VK 162 (276)
T ss_dssp SCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTT-SCEEEEET-TTTEEEEECTTS--CEEEE-EE
T ss_pred CCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCC-CCEEEEec-CCCEEEEECCCC--CEEEE-EE
Confidence 777778876 88999999999876554322 1 235788899875 55667774 478899999998 33222 22
Q ss_pred cCCcCceeEEEeccccEEEEeccceeeeeeeccc-cceeee
Q psy13629 261 STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD-GYVRLV 300 (395)
Q Consensus 261 ~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d-G~~~~~ 300 (395)
. -..|.+.... .++++++++...++|..++.+ |...-+
T Consensus 163 ~-~~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 163 L-SGTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp C-SSCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred C-CCCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 2 2468888887 567788988888899999988 665544
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.09 E-value=7.9e-05 Score=71.97 Aligned_cols=107 Identities=7% Similarity=0.046 Sum_probs=76.4
Q ss_pred CCCEEEEEECC-----CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeC---------CCCeEEEEEC
Q psy13629 139 KKSMVCWTDHG-----TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS---------ETNKLEVSSL 204 (395)
Q Consensus 139 ~~~~lywsd~~-----~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~---------~~~~I~v~~l 204 (395)
..+.+|++|.. ++.|++++.+... ....+.. ...| ++++++.++.||.++. ..+.|.+.++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~---~~~~i~~-g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGK---FLGMVPT-AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCC---EEEEEEC-CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCe---EEEEecC-CCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 34679998864 4688888876542 2222222 3467 9999999999999984 2457999998
Q ss_pred CCCceEEEEe-c-----CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 205 DGKKRKVLYW-E-----DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 205 dg~~~~~l~~-~-----~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
.......-+. . ....|.+++++|+.++||+++.+....|..++++.
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~ 140 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK 140 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC
Confidence 7644432222 1 24679999999999999999865457898888875
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0014 Score=63.81 Aligned_cols=154 Identities=12% Similarity=0.135 Sum_probs=106.3
Q ss_pred CCeEEEEEE-cC------CCEEEEEECCCCeEEEEEccCCCCCceEEE------------EeCC-----CCCcceEEEec
Q psy13629 129 EEGAAIDYY-YK------KSMVCWTDHGTEMISCCTFDGNNVGSKHNV------------ITNG-----LITPDGLAIDW 184 (395)
Q Consensus 129 ~~~~gl~~d-~~------~~~lywsd~~~~~I~~~~~dg~~~~~~~~i------------~~~~-----~~~p~glAVD~ 184 (395)
.....|.+| .. +..+|.+|.....|.++++.... .++.. ...+ .....|||+++
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~--swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp 229 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD--SWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGD 229 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE--EEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc--EEEEccCCCccccCcceEECCEEeEeccCceEEEecC
Confidence 346778888 22 67899999988889999887642 22211 1111 14678999998
Q ss_pred C----CCeEEEEeCCCCeEEEEE---CC-C---CceEEEEecC-CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC-C
Q psy13629 185 L----TEKLYWTDSETNKLEVSS---LD-G---KKRKVLYWED-IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG-D 251 (395)
Q Consensus 185 ~----~~~LYwtd~~~~~I~v~~---ld-g---~~~~~l~~~~-~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG-~ 251 (395)
. ++.|||.--...++++.. |. . ...+.+-... ..+..++++|+.+|.||+++.. ...|.+.+.++ .
T Consensus 230 ~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~-~~aI~~w~~~~~~ 308 (381)
T 3q6k_A 230 RDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEAN-TKQVSCWNTQKMP 308 (381)
T ss_dssp CCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESS-SSEEEEEETTSCS
T ss_pred CcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEecc-CCeEEEEeCCCCc
Confidence 7 789999998777888876 22 1 1222232222 2455678898889999999955 78899999886 3
Q ss_pred C--cceEEEEec-CCcCceeEEEeccccEEEEecccee
Q psy13629 252 P--RHRKVIVDS-TIFWPNGIAIDFNNRLLYWIDGRLT 286 (395)
Q Consensus 252 ~--~~~~~lv~~-~~~~P~glalD~~~~rLYwaD~~~~ 286 (395)
. .+..+++.. .+.||++|++| .++.||+......
T Consensus 309 ~~~~n~~~l~~d~~l~~pd~~~i~-~~g~Lwv~sn~l~ 345 (381)
T 3q6k_A 309 LRMKNTDVVYTSSRFVFGTDISVD-SKGGLWFMSNGFP 345 (381)
T ss_dssp BCGGGEEEEEECTTCCSEEEEEEC-TTSCEEEEECSCC
T ss_pred cccCceEEEEECCCccccCeEEEC-CCCeEEEEECcch
Confidence 2 244555554 68899999999 4668999885544
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0012 Score=64.31 Aligned_cols=120 Identities=10% Similarity=0.048 Sum_probs=84.5
Q ss_pred CCcceEEEe-c------CCCeEEEEeCCCCeEEEEECCCCceEEEEe-----c--------C-----CCCceeEEEeCC-
Q psy13629 175 ITPDGLAID-W------LTEKLYWTDSETNKLEVSSLDGKKRKVLYW-----E--------D-----IDQPRAIALVPQ- 228 (395)
Q Consensus 175 ~~p~glAVD-~------~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~-----~--------~-----~~~P~~iavdp~- 228 (395)
...++|+|| - .++.+|.||.....|.|+|+.......+.. + + .....|||++|.
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 356789999 2 257899999999999999998644333331 1 0 235779999998
Q ss_pred ---CCeEEEEeeCCCCeEEEEec----CCCCcceEEEEecCC--cCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 229 ---DSIMFWTDWGEVPKIERGAM----NGDPRHRKVIVDSTI--FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 229 ---~g~LYwtd~~~~~~I~~~~~----dG~~~~~~~lv~~~~--~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
.+.|||.-.. +.+++++.. +.........+.+.- ....++++|..++.||+++...+.|.+-+.++
T Consensus 232 ~~~~~~LYf~pls-s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 232 SEGNRPAYYLAGS-AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TTSCCEEEEEESS-CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CCCCeEEEEEECC-CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 7899999855 678888874 222122223333332 23446788767899999999999999998886
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0044 Score=57.09 Aligned_cols=178 Identities=9% Similarity=0.007 Sum_probs=121.4
Q ss_pred EEEEeeCCCCC--ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPL--KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~--~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|++.++.... ...........+.+++|++.++.|+... .++.|..++++.. .....+......+..+++++.+
T Consensus 120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~ 195 (337)
T 1gxr_A 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-SDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTS
T ss_pred cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCC---ceeeeeecccCceEEEEECCCC
Confidence 67888887633 2233444566788999999888777665 6788999998865 3333333345668889998866
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
+.|+ +-...+.|.+.++........+ .....+..++++|....|+.+. ....|...+++. ... .....+...+
T Consensus 196 ~~l~-~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--~~~~i~~~~~~~--~~~-~~~~~~~~~v 268 (337)
T 1gxr_A 196 TKLW-TGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGM--ESSNVEVLHVNK--PDK-YQLHLHESCV 268 (337)
T ss_dssp SEEE-EEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTS--SCE-EEECCCSSCE
T ss_pred CEEE-EEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEc--CCCcEEEEECCC--CCe-EEEcCCccce
Confidence 5555 4446789999999877665555 3456689999999888887765 245688888876 333 2333445568
Q ss_pred eeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
..++++++++.|+.+. ..+.|...++.....
T Consensus 269 ~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTG-KDNLLNAWRTPYGAS 299 (337)
T ss_dssp EEEEECTTSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred eEEEECCCCCEEEEec-CCCcEEEEECCCCeE
Confidence 8899987777665554 456677766654433
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.004 Score=60.06 Aligned_cols=183 Identities=9% Similarity=-0.068 Sum_probs=124.8
Q ss_pred EEEEeeCCC-CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSR-PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~-~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.|++.++.. ......+......+.+++|++.++.|+... .++.|..+++... ............+..+++.+.++
T Consensus 197 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~ 272 (401)
T 4aez_A 197 AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG-NDNVVQIWDARSS---IPKFTKTNHNAAVKAVAWCPWQS 272 (401)
T ss_dssp EEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTCS---SEEEEECCCSSCCCEEEECTTST
T ss_pred CEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEccCCCC---CccEEecCCcceEEEEEECCCCC
Confidence 567777763 233444555677889999999777666554 7789999999864 33333444556788999999888
Q ss_pred eEEEEeC--CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcC
Q psy13629 188 KLYWTDS--ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFW 265 (395)
Q Consensus 188 ~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~ 265 (395)
.++.+.. ..+.|.+.++........+ .......+++++|....|+.+.......|...++.............+...
T Consensus 273 ~ll~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~ 351 (401)
T 4aez_A 273 NLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR 351 (401)
T ss_dssp TEEEEECCTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC
T ss_pred CEEEEecCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC
Confidence 8888865 6889999999877666555 345678999999988888876523467788888875211111123345556
Q ss_pred ceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 266 PNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 266 P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
...+++++++..|+.+. .++.|..-++....
T Consensus 352 v~~~~~s~dg~~l~s~~-~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 352 VLYSALSPDGRILSTAA-SDENLKFWRVYDGD 382 (401)
T ss_dssp CCEEEECTTSSEEEEEC-TTSEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEe-CCCcEEEEECCCCc
Confidence 78889987777666554 34666666654433
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00092 Score=63.92 Aligned_cols=174 Identities=8% Similarity=-0.055 Sum_probs=115.5
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~~ 187 (395)
.|++.++........+......+.+++|++.+..++.+...++.|...++.... ....+.. .....+..+++.+.++
T Consensus 150 ~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~ 227 (344)
T 4gqb_B 150 CIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--PASQIGCSAPGYLPTSLAWHPQQS 227 (344)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--CEEECC----CCCEEEEEECSSCT
T ss_pred eEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc--eeeeeecceeeccceeeeecCCCC
Confidence 688888876333344445567789999999888888888788999999987542 1222211 1223567888888788
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
+++.+-..++.|.+.|+........+.......++++++|.+..+..+- +....|...++.. ........+-...+
T Consensus 228 ~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasg-s~D~~i~vwd~~~---~~~~~~~~H~~~V~ 303 (344)
T 4gqb_B 228 EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASL-SEDCSLAVLDSSL---SELFRSQAHRDFVR 303 (344)
T ss_dssp TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEE-ETTSCEEEECTTC---CEEEEECCCSSCEE
T ss_pred cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEE-eCCCeEEEEECCC---CcEEEEcCCCCCEE
Confidence 8888877789999999976555444435556779999999876555554 3345677777765 22222334555678
Q ss_pred eEEEeccccEEEEeccceeee
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFI 288 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I 288 (395)
++++.+.+++|..+-+.+++|
T Consensus 304 ~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 304 DATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp EEEECSSSTTEEEEEETTSCE
T ss_pred EEEEeCCCCeEEEEEcCCCeE
Confidence 888887777666554444444
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00048 Score=71.25 Aligned_cols=185 Identities=9% Similarity=-0.003 Sum_probs=113.6
Q ss_pred EEEEeeCC--CCCccEEecC-----CCCCeEEEEEEcCCCEEEEEECC---------CCeEEEEEccC------CCCCce
Q psy13629 109 DIRIANLS--RPLKPVTIIK-----DLEEGAAIDYYYKKSMVCWTDHG---------TEMISCCTFDG------NNVGSK 166 (395)
Q Consensus 109 ~I~~~~l~--~~~~~~~~~~-----~~~~~~gl~~d~~~~~lywsd~~---------~~~I~~~~~dg------~~~~~~ 166 (395)
.|.+++++ +......+.. ......+++|+++++.|+++... ...|+++++++ . ..
T Consensus 103 ~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~ 179 (662)
T 3azo_A 103 RLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS---AV 179 (662)
T ss_dssp CEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG---GS
T ss_pred eEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC---ce
Confidence 56777776 2023333333 23467789999999999887632 15799999987 4 22
Q ss_pred EEEEeCCCCCcceEEEecCCCeEEEEeCC-------CCeEEEEECCC-C---ceEEEEecCCCCceeEEEeCCCCeEEEE
Q psy13629 167 HNVITNGLITPDGLAIDWLTEKLYWTDSE-------TNKLEVSSLDG-K---KRKVLYWEDIDQPRAIALVPQDSIMFWT 235 (395)
Q Consensus 167 ~~i~~~~~~~p~glAVD~~~~~LYwtd~~-------~~~I~v~~ldg-~---~~~~l~~~~~~~P~~iavdp~~g~LYwt 235 (395)
..+.........++++.+.++.|+|+... ...|.+.++++ . ..+.+.......+..++.+|+++.+|.+
T Consensus 180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEE
T ss_pred eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEE
Confidence 33321333456778899989999988743 25899999984 3 3444543335678899999988755555
Q ss_pred eeCCCCeEEEEecCCCCcceEEEEecCCc--C------ceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 236 DWGEVPKIERGAMNGDPRHRKVIVDSTIF--W------PNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 236 d~~~~~~I~~~~~dG~~~~~~~lv~~~~~--~------P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
+.....+|++.++++ ...+.+...+.. . ...+++...+..+|.+..+..+|+.+++++...
T Consensus 260 ~~~~~~~l~~~~~~~--~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 260 DRTGWWNLHRVDPAT--GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGEL 328 (662)
T ss_dssp CTTSSCEEEEECTTT--CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEE
T ss_pred CCCCCeEEEEEECCC--CceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcE
Confidence 533445899999865 333444332211 1 234555534444444433445667777765543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0023 Score=61.73 Aligned_cols=185 Identities=7% Similarity=-0.084 Sum_probs=122.9
Q ss_pred EEEEeeCCCC-------CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE--eCCCCCcce
Q psy13629 109 DIRIANLSRP-------LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI--TNGLITPDG 179 (395)
Q Consensus 109 ~I~~~~l~~~-------~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~--~~~~~~p~g 179 (395)
.|++.++... .....+......+.+++|++.++.++++...++.|..++++.. .....+ ......+..
T Consensus 105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~ 181 (402)
T 2aq5_A 105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---AAVLTLGPDVHPDTIYS 181 (402)
T ss_dssp EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT---EEEEEECTTTCCSCEEE
T ss_pred eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC---CccEEEecCCCCCceEE
Confidence 6788887663 2344555567789999999987556666668889999999865 223333 234456788
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEECCCCceEEEE-e-cCCCCceeEEEeCCCCeEEEEee-CCCCeEEEEecCCCCcceE
Q psy13629 180 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY-W-EDIDQPRAIALVPQDSIMFWTDW-GEVPKIERGAMNGDPRHRK 256 (395)
Q Consensus 180 lAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~-~-~~~~~P~~iavdp~~g~LYwtd~-~~~~~I~~~~~dG~~~~~~ 256 (395)
+++++.+..|+ +-...+.|.+.++........+ . .....+..++++|.+.+|+...- +....|...++........
T Consensus 182 ~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~ 260 (402)
T 2aq5_A 182 VDWSRDGALIC-TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS 260 (402)
T ss_dssp EEECTTSSCEE-EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred EEECCCCCEEE-EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce
Confidence 99988555555 4446789999999876655444 2 22334789999987555544310 2356788888865212122
Q ss_pred EEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 257 VIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 257 ~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
.....+......++++++++.||++....+.|...+++...
T Consensus 261 ~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 261 LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred EEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 33223344678899999999999887667788887776544
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0029 Score=60.42 Aligned_cols=182 Identities=9% Similarity=-0.033 Sum_probs=120.3
Q ss_pred EEEEeeCCCCCccEE----ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVT----IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~----~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.|++.++........ .......+.+++|++.++.|.-. ..++.|...++... .....+.........+++.+
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg-s~d~~i~iwd~~~~---~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG-SKDICIKVWDLAQQ---VVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECS
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEE-eCCCeEEEEECCCC---cEEEEEcCcCCceEEEEecC
Confidence 688888876332221 12345678999999988776644 47889999998864 22333333445678899988
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEe--cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYW--EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~--~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
.+..++.+-...+.|.+.|+........+. .....+..++++|.++.++.+- +....|...++... ..... +..+
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg-~~dg~v~~wd~~~~-~~~~~-~~~h 256 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG-DENGTVSLVDTKST-SCVLS-SAVH 256 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE-ETTSEEEEEESCC---CCEE-EECC
T ss_pred CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe-ccCCcEEEEECCCC-cEEEE-EcCC
Confidence 777888888888999999997665543332 2345678999999888887765 33567888887651 22222 3334
Q ss_pred CcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
....+.+++.+.++++..+-..+++|..-+.....
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE 291 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence 45678888887776665555556667666665443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0099 Score=54.69 Aligned_cols=182 Identities=8% Similarity=-0.041 Sum_probs=119.9
Q ss_pred EEEEeeCCCCC---ccEEec--CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 109 DIRIANLSRPL---KPVTII--KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 109 ~I~~~~l~~~~---~~~~~~--~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
.|++.++.... ...... .....+..++|++.++.|+... .++.|..++++.... ............+..+++.
T Consensus 73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~-~~~~~~~~~~~~i~~~~~~ 150 (337)
T 1gxr_A 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-EASTLSIWDLAAPTP-RIKAELTSSAPACYALAIS 150 (337)
T ss_dssp EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-SSSEEEEEECCCC---EEEEEEECSSSCEEEEEEC
T ss_pred eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCCc-ceeeecccCCCceEEEEEC
Confidence 67777776522 122222 4566789999999888777665 678999999987521 1222333444567889998
Q ss_pred cCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCC
Q psy13629 184 WLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 184 ~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.++.|+... ..+.|.+.++........+......+.+++++|...+|+.+. ....|...++.. ...... ....
T Consensus 151 ~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~~~d~~~--~~~~~~-~~~~ 224 (337)
T 1gxr_A 151 PDSKVCFSCC-SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG--LDNTVRSWDLRE--GRQLQQ-HDFT 224 (337)
T ss_dssp TTSSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTT--TEEEEE-EECS
T ss_pred CCCCEEEEEe-CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe--cCCcEEEEECCC--CceEee-ecCC
Confidence 8666665444 568899999987766655544566789999999877777654 356788888875 222222 2233
Q ss_pred cCceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
..+..+++++.++.|+.+. ..+.|...+++.....
T Consensus 225 ~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~ 259 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKY 259 (337)
T ss_dssp SCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEE
T ss_pred CceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeE
Confidence 4578888987777777665 3466777776655443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0017 Score=63.56 Aligned_cols=187 Identities=7% Similarity=0.010 Sum_probs=123.0
Q ss_pred EEEEeeCCCCCc-------cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEE
Q psy13629 109 DIRIANLSRPLK-------PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~~-------~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glA 181 (395)
.|++.++..... ..........+..++|++.++.++.+...++.|..++++..........+......+..|+
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 284 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence 677777765211 2233455667899999997777888888899999999985421111222334446788999
Q ss_pred EecCCCeEEEEeCCCCeEEEEECCC-CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc-------
Q psy13629 182 IDWLTEKLYWTDSETNKLEVSSLDG-KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR------- 253 (395)
Q Consensus 182 VD~~~~~LYwtd~~~~~I~v~~ldg-~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~------- 253 (395)
+.+.++.++++-...+.|.+.++.. ......+........+++++|.+..++.+... ...|...++.....
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~ 363 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT-DRRLHVWDLSKIGEEQSTEDA 363 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET-TSCCEEEEGGGTTCCCCHHHH
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC-CCcEEEEeCCCCccccCcccc
Confidence 9998888888888889999999986 33333333456678999999988787777633 44566666543101
Q ss_pred ----ceEEE-EecCCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 254 ----HRKVI-VDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 254 ----~~~~l-v~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
...+. ...+...+..+++++.+..++.+-...+.|..-+++..
T Consensus 364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 12222 22344568899998776646666666677766665543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0037 Score=59.60 Aligned_cols=176 Identities=8% Similarity=-0.088 Sum_probs=117.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+++++........+......+..++|++.++.|+... .++.|..++++... ....+......+..+++.+.+
T Consensus 228 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~-- 301 (425)
T 1r5m_A 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS-DDGTLRIWHGGNGN---SQNCFYGHSQSIVSASWVGDD-- 301 (425)
T ss_dssp CEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEECSSSBS---CSEEECCCSSCEEEEEEETTT--
T ss_pred eEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc-CCCEEEEEECCCCc---cceEecCCCccEEEEEECCCC--
Confidence 677888876444445555667789999999888776655 77889988887642 222333344567888998755
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcc--------------
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH-------------- 254 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~-------------- 254 (395)
++++-...+.|.+.++........+......+..++++|...+|+.+. ....|...++.. ..
T Consensus 302 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~~~~~--~~~~~~~~~~~~~~~~ 377 (425)
T 1r5m_A 302 KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF--MDGQVNVYDLKK--LNSKSRSLYGNRDGIL 377 (425)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE--TTSCEEEEECHH--HHC-------------
T ss_pred EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEE--CCCeEEEEECCC--Cccceeeeeccccccc
Confidence 556666788999999987766655545567789999999887777655 245677777764 22
Q ss_pred ------eEEEEecCCc--CceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 255 ------RKVIVDSTIF--WPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 255 ------~~~lv~~~~~--~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
....+..+.. .++.+++++.++.|+.+. ..+.|...+++|
T Consensus 378 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~g 425 (425)
T 1r5m_A 378 NPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAY-SLQEGSVVAIPG 425 (425)
T ss_dssp -CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEE-SSSCCEEEECCC
T ss_pred CcccchhhhhhcCcccCCceEEEEccCCCceEEEEe-cCceEEEEeecC
Confidence 2222222322 677888887777666554 345565555543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0069 Score=56.85 Aligned_cols=178 Identities=8% Similarity=0.001 Sum_probs=117.9
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+.........++|++.++.|... ..++.|..++++.. .....+.........+++.+.++.
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g-~~dg~v~i~~~~~~---~~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATG-THVGKVNIFGVESG---KKEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEE-CTTSEEEEEETTTC---SEEEEEECSSSCEEEEEECTTSSE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEE-cCCCcEEEEEcCCC---ceeEEecCCCceEEEEEECCCCCE
Confidence 67888887633344444555667789999988876654 47889999998865 333344444456788999986665
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
|. +-...+.|.+.++........+.......+.++++|...+|.... ....|...++.. ......+..+......
T Consensus 179 la-sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s--~dg~i~iwd~~~--~~~~~~~~~h~~~v~~ 253 (321)
T 3ow8_A 179 LA-SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS--DDGYIKIYDVQH--ANLAGTLSGHASWVLN 253 (321)
T ss_dssp EE-EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC--TTSCEEEEETTT--CCEEEEECCCSSCEEE
T ss_pred EE-EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc--CCCeEEEEECCC--cceeEEEcCCCCceEE
Confidence 55 445678899999987665555534455678999999777665443 345677778765 3333334445556788
Q ss_pred EEEeccccEEEEeccceeeeeeeccccc
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
+++.+.+..|+-+ ..++.|..-++...
T Consensus 254 ~~~sp~~~~l~s~-s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 254 VAFCPDDTHFVSS-SSDKSVKVWDVGTR 280 (321)
T ss_dssp EEECTTSSEEEEE-ETTSCEEEEETTTT
T ss_pred EEECCCCCEEEEE-eCCCcEEEEeCCCC
Confidence 8888776665544 34556666665443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0017 Score=61.88 Aligned_cols=183 Identities=9% Similarity=-0.035 Sum_probs=114.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCe-EEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCc--ceEEEecC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEG-AAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP--DGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~-~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p--~glAVD~~ 185 (395)
.|.++++++ .+...+....... .+.+|+++++.|+++. ....|++.++++. ....+........ ...++++.
T Consensus 61 ~l~~~d~~~-g~~~~lt~~~~~~~~~~~~spdg~~l~~~~-~~~~l~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~d 135 (388)
T 3pe7_A 61 NYYLLDLNT-QVATQLTEGRGDNTFGGFLSPDDDALFYVK-DGRNLMRVDLATL---EENVVYQVPAEWVGYGTWVANSD 135 (388)
T ss_dssp EEEEEETTT-CEEEECCCSSCBCSSSCEECTTSSEEEEEE-TTTEEEEEETTTC---CEEEEEECCTTEEEEEEEEECTT
T ss_pred eEEEEeCCC-CceEEeeeCCCCCccceEEcCCCCEEEEEe-CCCeEEEEECCCC---cceeeeechhhcccccceeECCC
Confidence 477788877 4555555444433 3678999999999998 4578999999875 3333333211111 11233554
Q ss_pred CCeEEEEe---------------------CCCCeEEEEECCCCceEEEEecCCCCceeEEEeC-CCCeEEEEeeCC----
Q psy13629 186 TEKLYWTD---------------------SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP-QDSIMFWTDWGE---- 239 (395)
Q Consensus 186 ~~~LYwtd---------------------~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp-~~g~LYwtd~~~---- 239 (395)
+..++... .....|.+.++++...+.+. ........++++| +.++|.++..+.
T Consensus 136 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~ 214 (388)
T 3pe7_A 136 CTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLV 214 (388)
T ss_dssp SSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTS
T ss_pred CCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCC
Confidence 55554321 23468999999887776666 3445678999999 877776655332
Q ss_pred CCeEEEEecCCCCcceEEEEecCC-cCceeEEEeccccEEEEe-ccce---eeeeeeccccceee
Q psy13629 240 VPKIERGAMNGDPRHRKVIVDSTI-FWPNGIAIDFNNRLLYWI-DGRL---TFIEVMDYDGYVRL 299 (395)
Q Consensus 240 ~~~I~~~~~dG~~~~~~~lv~~~~-~~P~glalD~~~~rLYwa-D~~~---~~I~~~~~dG~~~~ 299 (395)
..+|+.++.+| ...+.+..... ......++.+++++|+++ +... ..|...++++...+
T Consensus 215 ~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (388)
T 3pe7_A 215 DARMWLINEDG--TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR 277 (388)
T ss_dssp SCSEEEEETTS--CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred cceEEEEeCCC--CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE
Confidence 45899999988 45555444321 124456788888888654 3222 24888888766543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00048 Score=65.74 Aligned_cols=181 Identities=9% Similarity=-0.055 Sum_probs=112.8
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEc-CCCEEEEEECC-----CCeEEEEEccCCCCCceEEEEeCCC-CCcceE
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYY-KKSMVCWTDHG-----TEMISCCTFDGNNVGSKHNVITNGL-ITPDGL 180 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~-~~~~lywsd~~-----~~~I~~~~~dg~~~~~~~~i~~~~~-~~p~gl 180 (395)
..|.++++.+ .....+.........++|++ ++++|.+.... ...|+.++.++. ....+..... ......
T Consensus 168 ~~l~~~d~~~-g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---~~~~l~~~~~~~~~~~~ 243 (388)
T 3pe7_A 168 CRLMRVDLKT-GESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT---NMRKVKTHAEGESCTHE 243 (388)
T ss_dssp EEEEEEETTT-CCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC---CCEESCCCCTTEEEEEE
T ss_pred ceEEEEECCC-CceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC---ceEEeeeCCCCcccccc
Confidence 5788888877 45555555556678899999 88888666543 348999998875 2233322211 124456
Q ss_pred EEecCCCeEEEE-eCCC-C--eEEEEECCCCceEEEEecCC-----CCceeEEEeCCCCeEEEEee-------CCCCeEE
Q psy13629 181 AIDWLTEKLYWT-DSET-N--KLEVSSLDGKKRKVLYWEDI-----DQPRAIALVPQDSIMFWTDW-------GEVPKIE 244 (395)
Q Consensus 181 AVD~~~~~LYwt-d~~~-~--~I~v~~ldg~~~~~l~~~~~-----~~P~~iavdp~~g~LYwtd~-------~~~~~I~ 244 (395)
+..+.++.|+++ +... . .|++.++++...+.+..... ..+.+++++|+.+.|+++-. .....|+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence 788877778554 3222 2 49999999877665543221 22666789998888887531 2357899
Q ss_pred EEecCCCCcceEEEEecCCc----------CceeEEEeccccEEEEeccc--eeeeeeeccc
Q psy13629 245 RGAMNGDPRHRKVIVDSTIF----------WPNGIAIDFNNRLLYWIDGR--LTFIEVMDYD 294 (395)
Q Consensus 245 ~~~~dG~~~~~~~lv~~~~~----------~P~glalD~~~~rLYwaD~~--~~~I~~~~~d 294 (395)
+.++++ ...+.+...... ....+++.+++++|+++... ...|+.++++
T Consensus 324 ~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 324 VFNMKN--GTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp EEETTT--TEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred EEeccC--CceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 999987 444444443221 24567888888889887532 3345555554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0014 Score=67.69 Aligned_cols=183 Identities=5% Similarity=-0.122 Sum_probs=112.1
Q ss_pred EEEEeeCCCC-----CccEEec-CCCCCeEEEEEEcCCCEEEEEECCC-------CeEEEEEccCCC-CCceEEEEeCCC
Q psy13629 109 DIRIANLSRP-----LKPVTII-KDLEEGAAIDYYYKKSMVCWTDHGT-------EMISCCTFDGNN-VGSKHNVITNGL 174 (395)
Q Consensus 109 ~I~~~~l~~~-----~~~~~~~-~~~~~~~gl~~d~~~~~lywsd~~~-------~~I~~~~~dg~~-~~~~~~i~~~~~ 174 (395)
+|.++++++. .....+. .......+++|+++++.|+++.... ..|+.++++++. ......+.....
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp EEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred EEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 5777888762 3445555 5555677889999999999886432 479999998421 112233333323
Q ss_pred CCcceEEEecCCCeEEEEeCCCC--eEEEEECCCCceEEEEecCCCC--------ceeEEEeCCCCeEEEEeeCCCCeEE
Q psy13629 175 ITPDGLAIDWLTEKLYWTDSETN--KLEVSSLDGKKRKVLYWEDIDQ--------PRAIALVPQDSIMFWTDWGEVPKIE 244 (395)
Q Consensus 175 ~~p~glAVD~~~~~LYwtd~~~~--~I~v~~ldg~~~~~l~~~~~~~--------P~~iavdp~~g~LYwtd~~~~~~I~ 244 (395)
..+..++..+.++ ||++....+ +|++.++++...+.+....... ...+++.|.+..+|.+.. ...+|+
T Consensus 242 ~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 319 (662)
T 3azo_A 242 EAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLG 319 (662)
T ss_dssp BCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEE
T ss_pred ceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEE
Confidence 5667788877666 777665445 8999998766655554322111 457888887766666655 678899
Q ss_pred EEecCCCCcceEEEEecCCcCceeE-EEeccccEEEEeccc---eeeeeeecccccee
Q psy13629 245 RGAMNGDPRHRKVIVDSTIFWPNGI-AIDFNNRLLYWIDGR---LTFIEVMDYDGYVR 298 (395)
Q Consensus 245 ~~~~dG~~~~~~~lv~~~~~~P~gl-alD~~~~rLYwaD~~---~~~I~~~~~dG~~~ 298 (395)
++++++ ...+.+ ..+.....++ +.| +++++++-.. ...|+.+++++...
T Consensus 320 ~~d~~~--~~~~~l-~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 320 ILDPES--GELVDA-AGPWTEWAATLTVS--GTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEETTT--TEEEEC-CSSCCEEEEEEEEE--TTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEECCC--CcEEEe-cCCCCeEEEEEecC--CCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 999886 333333 2222334445 444 6666655332 34677777765543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0013 Score=64.39 Aligned_cols=185 Identities=11% Similarity=0.075 Sum_probs=125.3
Q ss_pred EEEEeeCCC----------CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCce----EEEEeCCC
Q psy13629 109 DIRIANLSR----------PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSK----HNVITNGL 174 (395)
Q Consensus 109 ~I~~~~l~~----------~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~----~~i~~~~~ 174 (395)
.|+++++.. ......+......+.+++|++.+..++.+...++.|..++++....... ........
T Consensus 152 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~ 231 (430)
T 2xyi_A 152 DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231 (430)
T ss_dssp CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS
T ss_pred cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC
Confidence 466666643 1233344455667899999998874566666889999999886321011 12222334
Q ss_pred CCcceEEEecCCCeEEEEeCCCCeEEEEECCCC---ceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCC
Q psy13629 175 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK---KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGD 251 (395)
Q Consensus 175 ~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~---~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~ 251 (395)
..+.+++..+.+++++.+....+.|.+.++... .....+......++.|+++|...+++++- +....|...++...
T Consensus 232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg-~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG-SADKTVALWDLRNL 310 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEE-ETTSEEEEEETTCT
T ss_pred CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEE-eCCCeEEEEeCCCC
Confidence 568889998878888889888999999999865 22233334556789999999888777776 33567888888752
Q ss_pred CcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 252 PRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 252 ~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
..... .+..+......+++.+.++.++.+-...+.|...++..
T Consensus 311 ~~~~~-~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 311 KLKLH-SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp TSCSE-EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred CCCeE-EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 12222 23334456888999988877888877777787777654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.015 Score=54.55 Aligned_cols=164 Identities=9% Similarity=-0.005 Sum_probs=109.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+++++........+......+.+++|++.++.|.... .++.|..+++... .....+.........+++++.++
T Consensus 145 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~-~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~spd~~- 219 (321)
T 3ow8_A 145 KVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA-IDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQ- 219 (321)
T ss_dssp EEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTT---EEEEEECCCSSCCCEEEECTTSC-
T ss_pred cEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc-CCCeEEEEECCCC---cEEEEEcccCCceeEEEEcCCCC-
Confidence 678888876444444445556788999999888776554 7789999998764 22223333345678999998555
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
+..+-...+.|.+.++........+.........++++|...+|+-+. ....|...++.. ......+..+.....+
T Consensus 220 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s--~D~~v~iwd~~~--~~~~~~~~~h~~~v~~ 295 (321)
T 3ow8_A 220 LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS--SDKSVKVWDVGT--RTCVHTFFDHQDQVWG 295 (321)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTT--TEEEEEECCCSSCEEE
T ss_pred EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe--CCCcEEEEeCCC--CEEEEEEcCCCCcEEE
Confidence 445666788999999987766655544556688999999877766543 345677777764 2222223334456778
Q ss_pred EEEeccccEEEEe
Q psy13629 269 IAIDFNNRLLYWI 281 (395)
Q Consensus 269 lalD~~~~rLYwa 281 (395)
+++...+.+|..+
T Consensus 296 v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 296 VKYNGNGSKIVSV 308 (321)
T ss_dssp EEECTTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 8888666655443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0011 Score=67.62 Aligned_cols=176 Identities=10% Similarity=-0.036 Sum_probs=114.9
Q ss_pred EEEeeCCCCCccEEecCCC-CCeEEEEEEcCCCEEEEEEC--CCC--eEEEEEc--cCCCCCceEEEEeCCCCCcceEEE
Q psy13629 110 IRIANLSRPLKPVTIIKDL-EEGAAIDYYYKKSMVCWTDH--GTE--MISCCTF--DGNNVGSKHNVITNGLITPDGLAI 182 (395)
Q Consensus 110 I~~~~l~~~~~~~~~~~~~-~~~~gl~~d~~~~~lywsd~--~~~--~I~~~~~--dg~~~~~~~~i~~~~~~~p~glAV 182 (395)
+++.++++ .....+.... ....+++|+++ +.+|+++. +.. .|+.++. +|. . . ...........++
T Consensus 46 ~~lw~~~~-g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~---~-~--~l~~~~~~~~~~~ 117 (582)
T 3o4h_A 46 VNAYLYDG-GETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGE---E-Q--RLEAVKPMRILSG 117 (582)
T ss_dssp EEEEEEET-TEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTC---C-E--ECTTSCSBEEEEE
T ss_pred eeEEEEcC-CCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCc---c-c--cccCCCCceeeee
Confidence 44444555 4444444443 46778889887 78888885 233 6777888 664 2 2 2222334456677
Q ss_pred ecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC--CCCeEEEEecCCCCcceEEEEe
Q psy13629 183 DWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG--EVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 183 D~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~--~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
.+.++.++++....+.+.+.++++...+.+..... ..++++|+.++|+++... ....|++.++++ ...+.+.
T Consensus 118 s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~--g~~~~l~- 191 (582)
T 3o4h_A 118 VDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS--GGLRVFD- 191 (582)
T ss_dssp EECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTT--CCCEEEC-
T ss_pred CCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC--CCceEee-
Confidence 77777766665555556688998887776664332 889999999999876543 225699999887 3444443
Q ss_pred cCCcCceeEEEeccccEEEEeccce-eeeeeeccccceee
Q psy13629 261 STIFWPNGIAIDFNNRLLYWIDGRL-TFIEVMDYDGYVRL 299 (395)
Q Consensus 261 ~~~~~P~glalD~~~~rLYwaD~~~-~~I~~~~~dG~~~~ 299 (395)
.+....+.+++.++++.|+.++... ..|...++++...+
T Consensus 192 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 192 SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 3334568889998999999555332 37888888765544
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0016 Score=62.72 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=90.8
Q ss_pred CCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC-------eEEEEeCC--CCeEEEEECCCCc-
Q psy13629 139 KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE-------KLYWTDSE--TNKLEVSSLDGKK- 208 (395)
Q Consensus 139 ~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~-------~LYwtd~~--~~~I~v~~ldg~~- 208 (395)
....+.-++ ..+.+..++++|. ..+.+ . ...++++.+-+.-. .+|.++.. .++|.++++|...
T Consensus 39 ~~s~ii~t~-k~~gL~Vydl~G~---~l~~~--~-~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~ 111 (355)
T 3amr_A 39 QNSKLITTN-KKSGLVVYSLDGK---MLHSY--N-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (355)
T ss_dssp GGCEEEEEE-TTTEEEEEETTSC---EEEEE--C-CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred CccEEEEEc-CCCCEEEEcCCCc---EEEEc--c-CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence 334433344 3456777777664 22222 1 24667776655211 46999998 9999999776332
Q ss_pred -eEEE------EecCCCCceeEEE--eCCCC--eEEEEeeCCCCeEEEEec--CCCCcceEEEEec--CCcCceeEEEec
Q psy13629 209 -RKVL------YWEDIDQPRAIAL--VPQDS--IMFWTDWGEVPKIERGAM--NGDPRHRKVIVDS--TIFWPNGIAIDF 273 (395)
Q Consensus 209 -~~~l------~~~~~~~P~~iav--dp~~g--~LYwtd~~~~~~I~~~~~--dG~~~~~~~lv~~--~~~~P~glalD~ 273 (395)
...+ +...+..|+||++ +|..+ ++|+++- ..+++...+ ++.+.....++.+ --.+|-|+++|.
T Consensus 112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k--~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd 189 (355)
T 3amr_A 112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK--EGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD 189 (355)
T ss_dssp CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS--SSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET
T ss_pred ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC--CCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC
Confidence 2233 1244589999999 88777 4777662 356766555 2211111122222 134799999998
Q ss_pred cccEEEEeccceeeeeeeccc
Q psy13629 274 NNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 274 ~~~rLYwaD~~~~~I~~~~~d 294 (395)
..++||+++...+ |++++.+
T Consensus 190 ~~g~Lyv~eEd~G-Iw~~da~ 209 (355)
T 3amr_A 190 EYGRLYIAEEDEA-IWKFSAE 209 (355)
T ss_dssp TTTEEEEEETTTE-EEEEECS
T ss_pred CCCeEEEecccce-EEEEeCC
Confidence 8999999999855 9999854
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0011 Score=69.48 Aligned_cols=144 Identities=6% Similarity=-0.027 Sum_probs=103.2
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCC-----eEEEEEccCCCCCceEEEEeCCCC------------------------Ccc
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTE-----MISCCTFDGNNVGSKHNVITNGLI------------------------TPD 178 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~-----~I~~~~~dg~~~~~~~~i~~~~~~------------------------~p~ 178 (395)
...+..++|+++++.|+++...++ .|+.+++++. ....+...... ...
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG---QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC---CEEEEECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC---ceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 345789999999999998876455 8999999875 33333322111 257
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEECCCC---ceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce
Q psy13629 179 GLAIDWLTEKLYWTDSETNKLEVSSLDGK---KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR 255 (395)
Q Consensus 179 glAVD~~~~~LYwtd~~~~~I~v~~ldg~---~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~ 255 (395)
++++.+.++.|+++.. +.|.+.++++. ..+.+. .....+..++++|++++|+++. ...|+..++++ ...
T Consensus 113 ~~~~SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~---~~~i~~~d~~~--g~~ 184 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIR---GRNLWVIDLAS--GRQ 184 (741)
T ss_dssp CCEECTTSSEEEEEET--TEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEE---TTEEEEEETTT--TEE
T ss_pred eeEECCCCCEEEEEeC--CcEEEEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEEe---CCcEEEEecCC--CCE
Confidence 8999998899988876 89999999987 554443 3446689999999999888776 34799999987 333
Q ss_pred EEEEecCCc----------------CceeEEEeccccEEEEec
Q psy13629 256 KVIVDSTIF----------------WPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 256 ~~lv~~~~~----------------~P~glalD~~~~rLYwaD 282 (395)
+.+...... .+.++++.+++++|+++.
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~ 227 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR 227 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence 333222111 147789999999898874
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0012 Score=67.30 Aligned_cols=167 Identities=8% Similarity=-0.056 Sum_probs=104.2
Q ss_pred EEEEeeC--CCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANL--SRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l--~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|..+++ ++ ... .+ .........++.+.++.++++....+.+..+++++. ....+..... ..+++++.+
T Consensus 91 ~l~~~~~~~~g-~~~-~l-~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g---~~~~l~~~~~---~~~~~spDG 161 (582)
T 3o4h_A 91 ALFKVNTSRPG-EEQ-RL-EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG---GLRELARLPG---FGFVSDIRG 161 (582)
T ss_dssp EEEEEETTSTT-CCE-EC-TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT---EEEEEEEESS---CEEEEEEET
T ss_pred EEEEEeccCCC-ccc-cc-cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC---cEEEeecCCC---ceEEECCCC
Confidence 4555666 54 222 22 223334456778777766555445555557788765 3333433222 789999999
Q ss_pred CeEEEEeCC---CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 EKLYWTDSE---TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ~~LYwtd~~---~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.|+++... ...|++.++++...+.+. ......+.++++|+++.|+.++......|++.++++ ...+ ++....
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~g~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~--~~~~-~~~~~~ 237 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSSGGLRVFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD--GSVE-DLELPS 237 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTTCCCEEEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT--CCEE-ECCCSC
T ss_pred CEEEEEEEcCCCCeEEEEEcCCCCCceEee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC--CcEE-EccCCC
Confidence 999876532 257999999887777664 444556899999999999966633445899999998 4444 444433
Q ss_pred cCceeEE--------EeccccEEEEeccceeeee
Q psy13629 264 FWPNGIA--------IDFNNRLLYWIDGRLTFIE 289 (395)
Q Consensus 264 ~~P~gla--------lD~~~~rLYwaD~~~~~I~ 289 (395)
..+.+++ +++++ ++|++-...+++.
T Consensus 238 ~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~ 270 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDG-RLAVVARREGRSA 270 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEE
T ss_pred cChhhhhhccccceeEcCCC-cEEEEEEcCCcEE
Confidence 3344445 77666 6666544334443
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0016 Score=68.19 Aligned_cols=190 Identities=13% Similarity=0.171 Sum_probs=116.2
Q ss_pred cccCCCCcee-----EEEEEeeCCCCCccEEecCCCCC-----------------eEEEEEEcCCCEEEEEECCCC----
Q psy13629 98 EKLQPDGAYL-----LDIRIANLSRPLKPVTIIKDLEE-----------------GAAIDYYYKKSMVCWTDHGTE---- 151 (395)
Q Consensus 98 ~~~~~~~~~~-----~~I~~~~l~~~~~~~~~~~~~~~-----------------~~gl~~d~~~~~lywsd~~~~---- 151 (395)
..-+||+.++ ..|.++++++ .....+...... +.+++|+++++.|+++.....
T Consensus 157 ~~~SPDG~~la~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~ 235 (741)
T 2ecf_A 157 AKLSPKGGFVSFIRGRNLWVIDLAS-GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPV 235 (741)
T ss_dssp EEECTTSSEEEEEETTEEEEEETTT-TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCE
T ss_pred ccCCCCCCEEEEEeCCcEEEEecCC-CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCce
Confidence 4556675543 2688888876 444333332222 467999999998888743221
Q ss_pred ----------------------------eEEEEEccC-CCCCceEEEEeC--CCCCcceEEEecCCCeEEEEeC----CC
Q psy13629 152 ----------------------------MISCCTFDG-NNVGSKHNVITN--GLITPDGLAIDWLTEKLYWTDS----ET 196 (395)
Q Consensus 152 ----------------------------~I~~~~~dg-~~~~~~~~i~~~--~~~~p~glAVD~~~~~LYwtd~----~~ 196 (395)
.|+.+++++ . ....+... ....+..++. +.++.|+++.. ..
T Consensus 236 ~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~ 311 (741)
T 2ecf_A 236 QKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA---QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKK 311 (741)
T ss_dssp EEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC---CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSE
T ss_pred EecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC---ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCe
Confidence 566667665 4 22222221 2234567888 88888887753 34
Q ss_pred CeEEEEECCCCceEEEEecCCC----CceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeE-EE
Q psy13629 197 NKLEVSSLDGKKRKVLYWEDID----QPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGI-AI 271 (395)
Q Consensus 197 ~~I~v~~ldg~~~~~l~~~~~~----~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~gl-al 271 (395)
..|.+.++++.....++..... ...+++++|+++.+|.++.....+|++.+.+| . .+.+.. +-.....+ .+
T Consensus 312 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~-~~~~v~~~~~~ 387 (741)
T 2ecf_A 312 LDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG--K-AAALTH-GNWSVDELLAV 387 (741)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS--C-EEESCC-SSSCEEEEEEE
T ss_pred EEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC--C-eeeeee-cceEEEeEeEE
Confidence 5799999988776666543221 34688999987755544433456899998887 4 333332 22223455 48
Q ss_pred eccccEEEEeccc----eeeeeeeccccc
Q psy13629 272 DFNNRLLYWIDGR----LTFIEVMDYDGY 296 (395)
Q Consensus 272 D~~~~rLYwaD~~----~~~I~~~~~dG~ 296 (395)
+.++++||++-.. ..+|+.++.+|.
T Consensus 388 s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 388 DEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp ETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 8888888876443 345777777665
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0036 Score=59.46 Aligned_cols=184 Identities=8% Similarity=-0.046 Sum_probs=112.6
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEc-CCCEEEEEECC-C----CeEEEEEccCCCCCceEEEEeCC-CCCcceE
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYY-KKSMVCWTDHG-T----EMISCCTFDGNNVGSKHNVITNG-LITPDGL 180 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~-~~~~lywsd~~-~----~~I~~~~~dg~~~~~~~~i~~~~-~~~p~gl 180 (395)
..|.++++.+ .....+.........++|++ .+++|++.... . ..|+.+++++. ....+.... ...+..+
T Consensus 168 ~~l~~~d~~~-g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 168 CRLIKVDIET-GELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS---NVRKIKEHAEGESCTHE 243 (396)
T ss_dssp EEEEEEETTT-CCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC---CCEESSCCCTTEEEEEE
T ss_pred ceEEEEECCC-CcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC---ceeEeeccCCCccccce
Confidence 4778888876 44444555556678889999 67767665432 2 47999999875 223332211 2245667
Q ss_pred EEecCCCeEEEEeC--CCCe--EEEEECCCCceEEEEecCCCCceeEEEeC-CCCeEEEEee--------------CCCC
Q psy13629 181 AIDWLTEKLYWTDS--ETNK--LEVSSLDGKKRKVLYWEDIDQPRAIALVP-QDSIMFWTDW--------------GEVP 241 (395)
Q Consensus 181 AVD~~~~~LYwtd~--~~~~--I~v~~ldg~~~~~l~~~~~~~P~~iavdp-~~g~LYwtd~--------------~~~~ 241 (395)
++.+.++.|+++.. .... |.+.++++...+.+.... ... ++++| ++..|+.+.. ....
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence 88887887877742 2334 999999876665554222 122 78888 6665554321 1246
Q ss_pred eEEEEecCCCCcceEEEEecCCc----------CceeEEEeccccEEEEeccc--eeeeeeeccccceeee
Q psy13629 242 KIERGAMNGDPRHRKVIVDSTIF----------WPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDGYVRLV 300 (395)
Q Consensus 242 ~I~~~~~dG~~~~~~~lv~~~~~----------~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG~~~~~ 300 (395)
.|++.++++ ...+.+...... .+..+++++++++|+++... ...|+.+++++....+
T Consensus 321 ~i~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~ 389 (396)
T 3c5m_A 321 FLYVLNTKA--KSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHL 389 (396)
T ss_dssp EEEEEETTT--TBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC--
T ss_pred cEEEEeccc--CceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccc
Confidence 899999987 333344333221 14456788888888887543 3457777777765544
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0018 Score=67.40 Aligned_cols=161 Identities=11% Similarity=0.083 Sum_probs=104.1
Q ss_pred eEEEEEEcCCCEEEEEEC--------------------------------CCCeEEEEEccCCCCCceEEEEeC--CCCC
Q psy13629 131 GAAIDYYYKKSMVCWTDH--------------------------------GTEMISCCTFDGNNVGSKHNVITN--GLIT 176 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~--------------------------------~~~~I~~~~~dg~~~~~~~~i~~~--~~~~ 176 (395)
+.+++|+++++.|+++.. ....|+.+++++. ....+... .-..
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~---~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG---KTVYLQTGEPKEKF 259 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT---EEEECCCCSCTTCE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC---ceEeeccCCCCcee
Confidence 478999999999988751 2356888888765 22222211 1134
Q ss_pred cceEEEecCCCeEEEEeCCC----CeEEEEECCCC-ceEEEEecC-C---CCceeEEEeC--CCCeEEEEeeCCCCeEEE
Q psy13629 177 PDGLAIDWLTEKLYWTDSET----NKLEVSSLDGK-KRKVLYWED-I---DQPRAIALVP--QDSIMFWTDWGEVPKIER 245 (395)
Q Consensus 177 p~glAVD~~~~~LYwtd~~~----~~I~v~~ldg~-~~~~l~~~~-~---~~P~~iavdp--~~g~LYwtd~~~~~~I~~ 245 (395)
+..++..+.++.|+++.... ..|.+.++++. ..+.+.... . ....+++++| ++++||.++.....+|+.
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 56788888888888864322 48899999876 555554221 1 1236789999 777776665445678888
Q ss_pred EecCCCCcceEEEEecCCcCcee-EEEeccccEEEEecccee----eeeeeccccce
Q psy13629 246 GAMNGDPRHRKVIVDSTIFWPNG-IAIDFNNRLLYWIDGRLT----FIEVMDYDGYV 297 (395)
Q Consensus 246 ~~~dG~~~~~~~lv~~~~~~P~g-lalD~~~~rLYwaD~~~~----~I~~~~~dG~~ 297 (395)
++.+| ...+.+.. +...... ++++.++++||++....+ .|+.++.++..
T Consensus 340 ~~~~~--~~~~~l~~-~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 340 YDTTG--RLIRQVTK-GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EETTS--CEEEECCC-SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EECCC--CEEEecCC-CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 88777 43444432 2112233 788988889998876544 78888876644
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0016 Score=62.22 Aligned_cols=179 Identities=8% Similarity=-0.064 Sum_probs=114.6
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~~ 187 (395)
.|++.++........+......+.+++|.+.++.++.+...++.|...++..... ...+.. .....+..+++.+.++
T Consensus 162 ~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTST
T ss_pred eEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce--eeeeeeccccccccchhhhhccc
Confidence 6788888763333444445677899999998877788877888999888765421 111111 1223467788888778
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
+++.+-...+.|.+.++........+.......++++++|..+.+..+- +....|...+++. . +..-...+-...+
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg-s~D~~i~iwd~~~--~-~~~~~~~H~~~V~ 315 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASI-SEDCTVAVLDADF--S-EVFRDLSHRDFVT 315 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEE-ETTSCEEEECTTS--C-EEEEECCCSSCEE
T ss_pred ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEE-eCCCEEEEEECCC--C-cEeEECCCCCCEE
Confidence 8877777788999999877655544434456678999999876655544 3346677788775 2 2222223445678
Q ss_pred eEEEeccccEEEEeccceeeeeeecc
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
++++.+.+++++.+-..+++|..-++
T Consensus 316 ~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 316 GVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 88887644444444444455544333
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.021 Score=57.32 Aligned_cols=176 Identities=10% Similarity=0.100 Sum_probs=119.6
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.+..+ .....+......+.+++|++.++.|.... .++.|..++.++. .............++++.+.++.
T Consensus 367 ~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~d~~v~~~~~~~~----~~~~~~~~~~~v~~~~~s~d~~~ 440 (577)
T 2ymu_A 367 TVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQ----LLQTLTGHSSSVWGVAFSPDDQT 440 (577)
T ss_dssp EEEEEETTC-CEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTCC----EEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCC----EEEEecCCCCCeEEEEECCCCCE
Confidence 567777655 33444455567789999999888776554 6788888887764 22333344456788999886665
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
|. +-...+.|.+.++++.....+. .......+++++|+..+|..+. ....|...+.+| ...+.+ ..+....+.
T Consensus 441 l~-~~~~d~~v~~w~~~~~~~~~~~-~~~~~v~~~~~spd~~~las~~--~d~~i~iw~~~~--~~~~~~-~~h~~~v~~ 513 (577)
T 2ymu_A 441 IA-SASDDKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRNG--QLLQTL-TGHSSSVRG 513 (577)
T ss_dssp EE-EEETTSEEEEEETTSCEEEEEE-CCSSCEEEEEECTTSCEEEEEE--TTSEEEEEETTS--CEEEEE-ECCSSCEEE
T ss_pred EE-EEcCCCEEEEEECCCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEe--CCCEEEEEcCCC--CEEEEE-eCCCCCEEE
Confidence 54 4456789999999887766665 4456789999999877776554 346677788887 333333 334456788
Q ss_pred EEEeccccEEEEeccceeeeeeecccccee
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
+++.++++.|..+. .++.|..-+.+|...
T Consensus 514 l~~s~dg~~l~s~~-~dg~v~lwd~~~~~~ 542 (577)
T 2ymu_A 514 VAFSPDGQTIASAS-DDKTVKLWNRNGQLL 542 (577)
T ss_dssp EEECTTSSCEEEEE-TTSEEEEECTTSCEE
T ss_pred EEEcCCCCEEEEEE-CcCEEEEEeCCCCEE
Confidence 99987777666554 346677767766543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.024 Score=54.44 Aligned_cols=179 Identities=8% Similarity=-0.032 Sum_probs=118.5
Q ss_pred EEEEeeCCCCCccEEe-cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~-~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.|++.++......... ......+.+++|++.++.|+... .++.|..++++.. .....+.........++.+ +
T Consensus 114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~---~ 186 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL-GNGLVDIYDVESQ---TKLRTMAGHQARVGCLSWN---R 186 (401)
T ss_dssp EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE-TTSCEEEEETTTC---CEEEEECCCSSCEEEEEEE---T
T ss_pred eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC-CCCeEEEEECcCC---eEEEEecCCCCceEEEEEC---C
Confidence 7888888763332222 22466789999999888777665 6788999998765 2233333334455666653 3
Q ss_pred eEEEEeCCCCeEEEEECCC-CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 188 KLYWTDSETNKLEVSSLDG-KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg-~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
++.++-...+.|.+.++.. ......+........+++++|...+|+.+. ....|...++.. .........+....
T Consensus 187 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~v~iwd~~~--~~~~~~~~~~~~~v 262 (401)
T 4aez_A 187 HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG--NDNVVQIWDARS--SIPKFTKTNHNAAV 262 (401)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTC--SSEEEEECCCSSCC
T ss_pred CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe--CCCeEEEccCCC--CCccEEecCCcceE
Confidence 4555666789999999983 443444445567789999999776666554 245688888875 33333344455577
Q ss_pred eeEEEeccccEEEEecc--ceeeeeeecccccee
Q psy13629 267 NGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVR 298 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~ 298 (395)
..+++.+.+..++.+-. ..+.|...+++....
T Consensus 263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR 296 (401)
T ss_dssp CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence 88999987777877754 567787777655443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.018 Score=54.65 Aligned_cols=182 Identities=11% Similarity=-0.016 Sum_probs=118.1
Q ss_pred EEEEeeCCCCCccEEec--CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC--CCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVTII--KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG--LITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~--~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~--~~~p~glAVD~ 184 (395)
.|++.++.......... .....+.+++|++.++.++++...++.|...++++. ....+.... ...+..+++.+
T Consensus 97 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~ 173 (383)
T 3ei3_B 97 DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS---VIQVFAKTDSWDYWYCCVDVSV 173 (383)
T ss_dssp CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC---EEEEEECCCCSSCCEEEEEEET
T ss_pred eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC---ceEEEeccCCCCCCeEEEEECC
Confidence 68888887633333332 366788999999955555566668899999999874 333333222 24578999998
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc-ceEEEEecCC
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR-HRKVIVDSTI 263 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~-~~~~lv~~~~ 263 (395)
.+..|+ +-...+.|.+.++++.....+. .......+++++|....++++- +....|...++..... ........+.
T Consensus 174 ~~~~l~-~~~~d~~i~i~d~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~ 250 (383)
T 3ei3_B 174 SRQMLA-TGDSTGRLLLLGLDGHEIFKEK-LHKAKVTHAEFNPRCDWLMATS-SVDATVKLWDLRNIKDKNSYIAEMPHE 250 (383)
T ss_dssp TTTEEE-EEETTSEEEEEETTSCEEEEEE-CSSSCEEEEEECSSCTTEEEEE-ETTSEEEEEEGGGCCSTTCEEEEEECS
T ss_pred CCCEEE-EECCCCCEEEEECCCCEEEEec-cCCCcEEEEEECCCCCCEEEEE-eCCCEEEEEeCCCCCcccceEEEecCC
Confidence 666665 4446789999999877655554 4567789999999887455554 3356677777763111 1111112345
Q ss_pred cCceeEEEec-cccEEEEeccceeeeeeeccccce
Q psy13629 264 FWPNGIAIDF-NNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 264 ~~P~glalD~-~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
.....+++++ .+..|+.+. ..+.|...+++...
T Consensus 251 ~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 251 KPVNAAYFNPTDSTKLLTTD-QRNEIRVYSSYDWS 284 (383)
T ss_dssp SCEEEEEECTTTSCEEEEEE-SSSEEEEEETTBTT
T ss_pred CceEEEEEcCCCCCEEEEEc-CCCcEEEEECCCCc
Confidence 5788899997 666665554 45677777765433
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0019 Score=61.96 Aligned_cols=182 Identities=9% Similarity=0.010 Sum_probs=115.9
Q ss_pred EEEEeeCCCCC------ccEEe---cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC------
Q psy13629 109 DIRIANLSRPL------KPVTI---IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG------ 173 (395)
Q Consensus 109 ~I~~~~l~~~~------~~~~~---~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~------ 173 (395)
.|++.++.... ..... ......+.+++|++.++.++++...++.|..++++.. .....+...
T Consensus 137 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~ 213 (416)
T 2pm9_A 137 EIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK---KEVIHLSYTSPNSGI 213 (416)
T ss_dssp CEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT---EEEEEECCCCCSSCC
T ss_pred eEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC---CcceEEecccccccc
Confidence 67778876633 11111 2345678899999986667777778899999999875 222222222
Q ss_pred CCCcceEEEecCCCeEEEEeCCCC---eEEEEECCCC-ceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEec
Q psy13629 174 LITPDGLAIDWLTEKLYWTDSETN---KLEVSSLDGK-KRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248 (395)
Q Consensus 174 ~~~p~glAVD~~~~~LYwtd~~~~---~I~v~~ldg~-~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~ 248 (395)
...+..+++.+.++.++++-...+ .|.+.++... .....+. .....+.+++++|..+.++++- +....|...++
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~-~~dg~v~~wd~ 292 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS-GRDNTVLLWNP 292 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE-ESSSEEEEECS
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEE-eCCCCEEEeeC
Confidence 456888999987666666665666 8999999864 3323332 2345678999999444444443 23567888887
Q ss_pred CCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 249 NGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 249 dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
.. ......+..+-.....+++.+++.+++.+-...+.|..-++...
T Consensus 293 ~~--~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 293 ES--AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SS--CCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred CC--CccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 75 23333334445567888998776456666555666766665543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.57 E-value=0.045 Score=50.29 Aligned_cols=180 Identities=8% Similarity=-0.044 Sum_probs=116.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.+++|++.++.|+... .++.|..++++.. .....+.........+++.+.++.
T Consensus 46 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~ 121 (312)
T 4ery_A 46 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS-DDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNL 121 (312)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSSE
T ss_pred eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEEC-CCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCE
Confidence 567777755333344445566788999999887776554 7889999998865 233334444556778899886655
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
|+ +-...+.|.+.++........+.........++++|...+|+.+.. ...|...++... .....+...+......
T Consensus 122 l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~-~~~~~~~~~~~~~~~~ 197 (312)
T 4ery_A 122 IV-SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASG-QCLKTLIDDDNPPVSF 197 (312)
T ss_dssp EE-EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTC-CEEEEECCSSCCCEEE
T ss_pred EE-EEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC--CCcEEEEECCCC-ceeeEEeccCCCceEE
Confidence 55 5556788999999876655555344556789999997777766542 456777777641 2223333333334566
Q ss_pred EEEeccccEEEEeccceeeeeeeccccce
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
+++++.++.|..+. ..+.|...++....
T Consensus 198 ~~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 198 VKFSPNGKYILAAT-LDNTLKLWDYSKGK 225 (312)
T ss_dssp EEECTTSSEEEEEE-TTTEEEEEETTTTE
T ss_pred EEECCCCCEEEEEc-CCCeEEEEECCCCc
Confidence 78887776666554 34666666665443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0096 Score=58.38 Aligned_cols=160 Identities=9% Similarity=-0.025 Sum_probs=107.6
Q ss_pred CeEEEEEEcCCCEEEEEECCCCeEEEEEcc--CCCCCceEEEEe-CCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFD--GNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~~~I~~~~~d--g~~~~~~~~i~~-~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
.+.+++|++.++.|+.+...++.|..++++ +.. ....+.. .....+.++++++.+..|+.++. .+.|.+.++..
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~~ 180 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN--VLKLRKRFCFSKRPNAISIAEDDTTVIIADK-FGDVYSIDINS 180 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS--CEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEEETTS
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc--eeeeeecccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEecCC
Confidence 588999999999988888788999999987 432 2233221 23356789999997778877764 68899998865
Q ss_pred CceEE----EEecCCCCceeEEEeCC---CCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEE
Q psy13629 207 KKRKV----LYWEDIDQPRAIALVPQ---DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 207 ~~~~~----l~~~~~~~P~~iavdp~---~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLY 279 (395)
..... .+.........++++|. +.+|+.+.. ...|...++... .....+...+...+..+++. +++.|+
T Consensus 181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~--d~~i~vwd~~~~-~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR--DEHIKISHYPQC-FIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET--TSCEEEEEESCT-TCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC--CCcEEEEECCCC-ceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 44321 22233467889999998 556655542 456777777641 23333344455678889998 666666
Q ss_pred Eeccceeeeeeeccccce
Q psy13629 280 WIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 280 waD~~~~~I~~~~~dG~~ 297 (395)
.+. .++.|...++....
T Consensus 257 s~~-~d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 257 SAG-GDDKIFAWDWKTGK 273 (450)
T ss_dssp EEE-SSSEEEEEETTTCC
T ss_pred EEe-CCCeEEEEECCCCc
Confidence 554 56778777765544
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.01 Score=55.46 Aligned_cols=169 Identities=11% Similarity=0.019 Sum_probs=107.7
Q ss_pred ceeEEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC----CCeEEEEEccCCCCCceEEEEeCCCCCcceE
Q psy13629 105 AYLLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG----TEMISCCTFDGNNVGSKHNVITNGLITPDGL 180 (395)
Q Consensus 105 ~~~~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~----~~~I~~~~~dg~~~~~~~~i~~~~~~~p~gl 180 (395)
.+...|.++++++ .....+ .....+.|+++++.|++.... ...|+.+++++. ....+.... . ..++
T Consensus 40 ~~~~~l~~~d~~~-~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g---~~~~l~~~~-~-~~~~ 109 (347)
T 2gop_A 40 KYENTIVIENLKN-NARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL---SSKKILEAK-N-IRSL 109 (347)
T ss_dssp EEEEEEEEEETTT-CCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT---EEEEEEEES-E-EEEE
T ss_pred CccceEEEEeCCC-CceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC---ceEEEEcCC-C-ccce
Confidence 4567788888877 333333 567788999999988887543 235888888875 333333322 2 7788
Q ss_pred EEecCCCeEEEEeCC--------------------------CCeEEEEECCCCce-EEEEecCCCCceeEEEeCCCCeEE
Q psy13629 181 AIDWLTEKLYWTDSE--------------------------TNKLEVSSLDGKKR-KVLYWEDIDQPRAIALVPQDSIMF 233 (395)
Q Consensus 181 AVD~~~~~LYwtd~~--------------------------~~~I~v~~ldg~~~-~~l~~~~~~~P~~iavdp~~g~LY 233 (395)
+..+.++.|+++... ...|.+.++++... +.+.. . ....++++|++ .+|
T Consensus 110 ~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg-~~~ 185 (347)
T 2gop_A 110 EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK-IVV 185 (347)
T ss_dssp EECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-EEE
T ss_pred eECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-EEE
Confidence 888878888887521 35799999988776 55543 2 77889999977 666
Q ss_pred EEeeCC-------CCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccc-------eeeeeeeccccc
Q psy13629 234 WTDWGE-------VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGR-------LTFIEVMDYDGY 296 (395)
Q Consensus 234 wtd~~~-------~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~-------~~~I~~~~~dG~ 296 (395)
.+.... ...|+.++ .| ..+.+... ..... +++++++|+++... ...|...+ .|.
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d-~~---~~~~l~~~--~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~ 253 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWE-DG---KEEKMFEK--VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKE 253 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEE-TT---EEEEEEEE--ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSC
T ss_pred EEecccccccccccccEEEeC-CC---ceEEeccC--cceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCc
Confidence 664331 34688888 54 33333332 22222 26677778776422 34677777 444
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.028 Score=56.33 Aligned_cols=178 Identities=10% Similarity=0.090 Sum_probs=120.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++.+ .....+......+.+++|++.++.|.... .++.|...+.++. ....+......+.++++.+.++.
T Consensus 326 ~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~dg~v~~~~~~~~----~~~~~~~~~~~v~~~~~s~dg~~ 399 (577)
T 2ymu_A 326 TVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASAS-DDKTVKLWNRNGQ----LLQTLTGHSSSVRGVAFSPDGQT 399 (577)
T ss_dssp CEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTCC----EEEEEECCSSCEEEEEECTTSSC
T ss_pred eEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEcCCCC----EEEEecCCCCCeEEEEECCCCCE
Confidence 567777766 44445555667789999999888776554 6788888887764 22333444567889999986666
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
|.. -...+.|.+.+.++.....+. ..-....+++++|++.+|..+. ....|...++++ .....+ ..+-.....
T Consensus 400 l~~-~~~d~~v~~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~--~d~~v~~w~~~~--~~~~~~-~~~~~~v~~ 472 (577)
T 2ymu_A 400 IAS-ASDDKTVKLWNRNGQLLQTLT-GHSSSVWGVAFSPDDQTIASAS--DDKTVKLWNRNG--QLLQTL-TGHSSSVRG 472 (577)
T ss_dssp EEE-EETTSEEEEECTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTS--CEEEEE-ECCSSCEEE
T ss_pred EEE-EeCCCEEEEEeCCCCEEEEec-CCCCCeEEEEECCCCCEEEEEc--CCCEEEEEECCC--CEEEEE-cCCCCCEEE
Confidence 654 445688999999887766655 4456678999999888776554 345677788877 333333 334446788
Q ss_pred EEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
++++++++.|..+. ..+.|..-+.+|.....
T Consensus 473 ~~~spd~~~las~~-~d~~i~iw~~~~~~~~~ 503 (577)
T 2ymu_A 473 VAFSPDGQTIASAS-DDKTVKLWNRNGQLLQT 503 (577)
T ss_dssp EEECTTSCEEEEEE-TTSEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEe-CCCEEEEEcCCCCEEEE
Confidence 99987777666554 34566666666654443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0006 Score=64.97 Aligned_cols=182 Identities=10% Similarity=0.008 Sum_probs=107.6
Q ss_pred EEEEeeCCCCCccEEecCCCCCeE-EEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCC-CCcce--EE---
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGA-AIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL-ITPDG--LA--- 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~-gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~-~~p~g--lA--- 181 (395)
.|.++++++ .+...+........ ++.|+++++.|+++.. .+.|+++++++. ....+..... ..|.| |+
T Consensus 61 ~l~~~d~~~-~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~~---~~~~~~~~~~~~~~~g~~l~~~~ 135 (396)
T 3c5m_A 61 NYYLLNLET-QQAVQLTEGKGDNTFGGFISTDERAFFYVKN-ELNLMKVDLETL---EEQVIYTVDEEWKGYGTWVANSD 135 (396)
T ss_dssp EEEEEETTT-TEEEECCCSSCBCTTTCEECTTSSEEEEEET-TTEEEEEETTTC---CEEEEEECCTTEEEEEEEEECTT
T ss_pred eEEEEECCC-CcEEEeecCCCCccccceECCCCCEEEEEEc-CCcEEEEECCCC---CcEEEEecccccCCCCCEEEecc
Confidence 567778776 44444433333323 3779999999988873 457999999875 3333333111 11221 11
Q ss_pred -------------EecCCCeEEEEe----CCCCeEEEEECCCCceEEEEecCCCCceeEEEeC-CCCeEEEEeeCCC---
Q psy13629 182 -------------IDWLTEKLYWTD----SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP-QDSIMFWTDWGEV--- 240 (395)
Q Consensus 182 -------------VD~~~~~LYwtd----~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp-~~g~LYwtd~~~~--- 240 (395)
+.+.++.+++.. .....|.+.++++...+.+. ........++++| .+++|+++.-+..
T Consensus 136 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~ 214 (396)
T 3c5m_A 136 CTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLV 214 (396)
T ss_dssp SSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSC
T ss_pred CCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCC
Confidence 112222333322 34567899999887666655 4455678899999 5666666542322
Q ss_pred -CeEEEEecCCCCcceEEEEecC-CcCceeEEEeccccEEEEeccc--e--eeeeeecccccee
Q psy13629 241 -PKIERGAMNGDPRHRKVIVDST-IFWPNGIAIDFNNRLLYWIDGR--L--TFIEVMDYDGYVR 298 (395)
Q Consensus 241 -~~I~~~~~dG~~~~~~~lv~~~-~~~P~glalD~~~~rLYwaD~~--~--~~I~~~~~dG~~~ 298 (395)
.+|+.++.+| ...+.+.... ...+..+++++++++|+++... . ..|...++++...
T Consensus 215 ~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 215 DARMWLVNEDG--SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp SCCCEEEETTS--CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CceEEEEECCC--CceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 5799999987 4444444321 2246667888888888777322 2 3488888765443
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00091 Score=68.12 Aligned_cols=111 Identities=16% Similarity=0.107 Sum_probs=80.8
Q ss_pred CCCCeEEEEEEcCCCEEEEEECC---------------------CCeEEEEEccCCCC----CceEEEEeC---------
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHG---------------------TEMISCCTFDGNNV----GSKHNVITN--------- 172 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~---------------------~~~I~~~~~dg~~~----~~~~~i~~~--------- 172 (395)
...++.++++++.++.||++=.+ .+.|+++..++... ...+.++..
T Consensus 382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~ 461 (592)
T 4a9v_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence 34579999999999999998321 26799998865321 112333321
Q ss_pred ------------CCCCcceEEEecCCCeEEE-EeCC-----------CCeEEEEECCCCceEEEEe-cCCCCceeEEEeC
Q psy13629 173 ------------GLITPDGLAIDWLTEKLYW-TDSE-----------TNKLEVSSLDGKKRKVLYW-EDIDQPRAIALVP 227 (395)
Q Consensus 173 ------------~~~~p~glAVD~~~~~LYw-td~~-----------~~~I~v~~ldg~~~~~l~~-~~~~~P~~iavdp 227 (395)
.+++|.+|++|. .|.||+ ||.. ++.+++++.+....+.++. .....|+|++++|
T Consensus 462 ~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP 540 (592)
T 4a9v_A 462 PKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred cccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC
Confidence 368899999997 689999 8853 4489999986555555553 3467899999999
Q ss_pred CCCeEEEEeeC
Q psy13629 228 QDSIMFWTDWG 238 (395)
Q Consensus 228 ~~g~LYwtd~~ 238 (395)
+.+.||++-..
T Consensus 541 D~ktLfV~vQH 551 (592)
T 4a9v_A 541 DQKTLFVGIQH 551 (592)
T ss_dssp TSSEEEEEEES
T ss_pred CCCEEEEEEeC
Confidence 99999998754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0023 Score=61.33 Aligned_cols=190 Identities=10% Similarity=0.008 Sum_probs=118.5
Q ss_pred EEEEeeCCC----CCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCc---eEEEE---eCCCCCcc
Q psy13629 109 DIRIANLSR----PLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS---KHNVI---TNGLITPD 178 (395)
Q Consensus 109 ~I~~~~l~~----~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~---~~~i~---~~~~~~p~ 178 (395)
.|++.++.. ......+......+..++|++.++.++.+...++.|..++++...... ..... ......+.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 577777765 123334444566789999999845566666678899999887642000 11111 12335678
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecC------CCCceeEEEeCCCCeEEEEeeCC--CCeEEEEecCC
Q psy13629 179 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED------IDQPRAIALVPQDSIMFWTDWGE--VPKIERGAMNG 250 (395)
Q Consensus 179 glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~------~~~P~~iavdp~~g~LYwtd~~~--~~~I~~~~~dG 250 (395)
++++.+.++.++++-...+.|.+.++........+... ......++++|.++.++++-..+ ...|...++..
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 89999876777778778899999999887666555333 56689999999876555554232 12677777765
Q ss_pred CCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 251 DPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 251 ~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
.......+...+......+++.+.+++++.+-...+.|...+++....
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~ 297 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc
Confidence 211122221134446788888873444555555567787777655433
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.018 Score=55.22 Aligned_cols=184 Identities=5% Similarity=-0.107 Sum_probs=116.5
Q ss_pred EEEEeeCCCCCc----cEEecCCCCCeEEEEEEc-CCCEEEEEECCCCeEEEEEccCCCCC----ceEEEEeCCCCCcce
Q psy13629 109 DIRIANLSRPLK----PVTIIKDLEEGAAIDYYY-KKSMVCWTDHGTEMISCCTFDGNNVG----SKHNVITNGLITPDG 179 (395)
Q Consensus 109 ~I~~~~l~~~~~----~~~~~~~~~~~~gl~~d~-~~~~lywsd~~~~~I~~~~~dg~~~~----~~~~i~~~~~~~p~g 179 (395)
.|++++++.... ...+......+.+++|++ .++. +.+...++.|..++++..... .....+......+..
T Consensus 58 ~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~-l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~ 136 (402)
T 2aq5_A 58 AFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNV-IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136 (402)
T ss_dssp CEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTE-EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEE
T ss_pred EEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCE-EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEE
Confidence 677777754221 222334566789999999 5554 455557899999998764210 112233344567888
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEECCCCceEEEE--ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEE
Q psy13629 180 LAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY--WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKV 257 (395)
Q Consensus 180 lAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~--~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~ 257 (395)
+++.+.+++++++-...+.|.+.++........+ .........++++|...+|+.+. ....|...++... .....
T Consensus 137 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~-~~~~~ 213 (402)
T 2aq5_A 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC--RDKRVRVIEPRKG-TVVAE 213 (402)
T ss_dssp EEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE--TTSEEEEEETTTT-EEEEE
T ss_pred EEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe--cCCcEEEEeCCCC-ceeee
Confidence 9999876667777777889999999877665555 33456789999999777776655 2467888888651 22222
Q ss_pred EEecCCc-CceeEEEeccccEEEEec--cceeeeeeeccccc
Q psy13629 258 IVDSTIF-WPNGIAIDFNNRLLYWID--GRLTFIEVMDYDGY 296 (395)
Q Consensus 258 lv~~~~~-~P~glalD~~~~rLYwaD--~~~~~I~~~~~dG~ 296 (395)
+...+.. .+..+++..++..|+.+- ...+.|...+++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~ 255 (402)
T 2aq5_A 214 KDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL 255 (402)
T ss_dssp EECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred eccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence 2122222 367788886655444431 45667777776553
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.016 Score=54.94 Aligned_cols=162 Identities=9% Similarity=-0.010 Sum_probs=110.7
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe--CCCCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT--NGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~--~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
.....+.+++|++.+..++.+...++.|..+++++.. ...... .....+.++++.+.++++.++-...+.|.+.+
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN---KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT---CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc---cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 3446789999999883445555578899999998652 233332 23456778888875556666666789999999
Q ss_pred CCCCceEEEEecC--CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEe
Q psy13629 204 LDGKKRKVLYWED--IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 204 ldg~~~~~l~~~~--~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwa 281 (395)
+.+.....+.... ......++++|...+|+... ....|...++++ .... .+..+......+++++.+..++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~--~~~~-~~~~h~~~v~~~~~~~~~~~~l~s 222 (383)
T 3ei3_B 148 FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD--STGRLLLLGLDG--HEIF-KEKLHKAKVTHAEFNPRCDWLMAT 222 (383)
T ss_dssp TTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEE--TTSEEEEEETTS--CEEE-EEECSSSCEEEEEECSSCTTEEEE
T ss_pred CCCCceEEEeccCCCCCCeEEEEECCCCCEEEEEC--CCCCEEEEECCC--CEEE-EeccCCCcEEEEEECCCCCCEEEE
Confidence 9986665555322 25588999999888776655 356788888876 3333 333455678889998777645555
Q ss_pred ccceeeeeeecccc
Q psy13629 282 DGRLTFIEVMDYDG 295 (395)
Q Consensus 282 D~~~~~I~~~~~dG 295 (395)
-..++.|...++..
T Consensus 223 ~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 223 SSVDATVKLWDLRN 236 (383)
T ss_dssp EETTSEEEEEEGGG
T ss_pred EeCCCEEEEEeCCC
Confidence 55567777777654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.004 Score=59.46 Aligned_cols=183 Identities=7% Similarity=-0.023 Sum_probs=113.4
Q ss_pred EEEEeeCCCCCcc----EEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRPLKP----VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~----~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.|++.++...... .........+.+++|++.++.|.-.. .++.|...++... .....+.........+++.+
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs-~dg~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~ 191 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG-KDFSVKVWDLSQK---AVLKSYNAHSSEVNCVAACP 191 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTT---EEEEEECCCSSCEEEEEECT
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe-CCCeEEEEECCCC---cEEEEEcCCCCCEEEEEEcc
Confidence 5666666542111 11223456689999999888776544 7888999998764 22333334456678899988
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEe--cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYW--EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~--~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
.++.++.+....+.|.+.++........+. .....+..++++|.++.++.+- +....|...++.. ......+..+
T Consensus 192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g-~~d~~i~~wd~~~--~~~~~~~~~~ 268 (357)
T 4g56_B 192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG-DETGNVSLVNIKN--PDSAQTSAVH 268 (357)
T ss_dssp TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEE-ESSSCEEEEESSC--GGGCEEECCC
T ss_pred CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEe-ecccceeEEECCC--CcEeEEEecc
Confidence 777777888788899999987654433221 2234578999999888777654 2345677777765 2222223333
Q ss_pred CcCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
....+.+++.+.++++..+-..+++|..-+.+....
T Consensus 269 ~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 269 SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 445678888877766555545556777767665443
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0015 Score=66.45 Aligned_cols=107 Identities=9% Similarity=0.052 Sum_probs=76.5
Q ss_pred CCCcceEEEecCCCeEEEEeCC---------------------CCeEEEEECCCCc-------eEEEEec----------
Q psy13629 174 LITPDGLAIDWLTEKLYWTDSE---------------------TNKLEVSSLDGKK-------RKVLYWE---------- 215 (395)
Q Consensus 174 ~~~p~glAVD~~~~~LYwtd~~---------------------~~~I~v~~ldg~~-------~~~l~~~---------- 215 (395)
+.+|+++++++.++.+|++-.+ .++|.+...++.. -..++..
T Consensus 383 mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~ 462 (592)
T 4a9v_A 383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP 462 (592)
T ss_dssp EECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred ccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccc
Confidence 4589999999999999999522 3789999876532 1222211
Q ss_pred -----------CCCCceeEEEeCCCCeEEE-EeeC----------CCCeEEEEecCCCCcceEEEEe-cCCcCceeEEEe
Q psy13629 216 -----------DIDQPRAIALVPQDSIMFW-TDWG----------EVPKIERGAMNGDPRHRKVIVD-STIFWPNGIAID 272 (395)
Q Consensus 216 -----------~~~~P~~iavdp~~g~LYw-td~~----------~~~~I~~~~~dG~~~~~~~lv~-~~~~~P~glalD 272 (395)
.+..|.+|++|+ .|.||+ ||-+ ....+++++.+. ...+.++. .....|+|+++.
T Consensus 463 ~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t--Gel~~fl~~P~~aEpnGiafS 539 (592)
T 4a9v_A 463 KGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT--GEIRRFMVGPIGCEVTGISFS 539 (592)
T ss_dssp GGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT--CCEEEEEECCTTCEEEEEEEC
T ss_pred ccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCC--CeEEEEEeCCCCccccCCEEC
Confidence 268899999998 578888 8843 134799998854 23333443 334579999999
Q ss_pred ccccEEEEecc
Q psy13629 273 FNNRLLYWIDG 283 (395)
Q Consensus 273 ~~~~rLYwaD~ 283 (395)
++++.||++-.
T Consensus 540 PD~ktLfV~vQ 550 (592)
T 4a9v_A 540 PDQKTLFVGIQ 550 (592)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 99999999853
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0085 Score=62.25 Aligned_cols=183 Identities=11% Similarity=0.076 Sum_probs=116.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccC-----CCCCceEEEEeCCCC--------
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDG-----NNVGSKHNVITNGLI-------- 175 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg-----~~~~~~~~i~~~~~~-------- 175 (395)
.|+++++.+ .....+......+..++|+++++.|+++. ++.|+..++++ . ....+......
T Consensus 102 ~i~~~d~~~-~~~~~l~~~~~~~~~~~~SpdG~~la~~~--~~~i~v~~~~~~~~~~g---~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 102 GLVGFDMLA-RKVTYLFDTNEETASLDFSPVGDRVAYVR--NHNLYIARGGKLGEGMS---RAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp EEEEEETTT-TEEEEEECCTTCCTTCEECTTSSEEEEEE--TTEEEEEECBCTTSCCC---CCEESCSCCBTTEEESSCC
T ss_pred EEEEEECCC-CceEEccCCcccccCCcCCCCCCEEEEEE--CCeEEEEecCcccccCC---CcEEeccCCCCCeEcccch
Confidence 788888876 45445555555677889999999998864 57899999886 4 22222222211
Q ss_pred ------CcceEEEecCCCeEEEEeC--------------------------------CCCeEEEEECCCCceEEEEec--
Q psy13629 176 ------TPDGLAIDWLTEKLYWTDS--------------------------------ETNKLEVSSLDGKKRKVLYWE-- 215 (395)
Q Consensus 176 ------~p~glAVD~~~~~LYwtd~--------------------------------~~~~I~v~~ldg~~~~~l~~~-- 215 (395)
.+.+++..+.++.|+++.. ...+|.+.++++.....+...
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 2588999998888888751 346799999988765544321
Q ss_pred CCCCceeEEEeCCCCeEEEEeeCC---CCeEEEEecCCCCcceEEEEec-CCcC---ceeEEEec--cccEEEEecc-ce
Q psy13629 216 DIDQPRAIALVPQDSIMFWTDWGE---VPKIERGAMNGDPRHRKVIVDS-TIFW---PNGIAIDF--NNRLLYWIDG-RL 285 (395)
Q Consensus 216 ~~~~P~~iavdp~~g~LYwtd~~~---~~~I~~~~~dG~~~~~~~lv~~-~~~~---P~glalD~--~~~rLYwaD~-~~ 285 (395)
....+..++++|++++|+++.... ...|...+.++. ...+.+... ...+ .+++++.+ +++.||.++. +.
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG-RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC-CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC-ceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 123467899999999898865331 247888888762 133344322 2111 25678876 6665655543 23
Q ss_pred eeeeeecccccee
Q psy13629 286 TFIEVMDYDGYVR 298 (395)
Q Consensus 286 ~~I~~~~~dG~~~ 298 (395)
.+|+.++.+|...
T Consensus 335 ~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 335 NHLYLYDTTGRLI 347 (706)
T ss_dssp CEEEEEETTSCEE
T ss_pred cEEEEEECCCCEE
Confidence 5666666655443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.36 E-value=0.039 Score=51.58 Aligned_cols=182 Identities=9% Similarity=0.029 Sum_probs=113.9
Q ss_pred EEEEeeCCCCC--ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eCCCCCcceEEEecC
Q psy13629 109 DIRIANLSRPL--KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~~--~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~~~~~p~glAVD~~ 185 (395)
.|++++++... ....+......+.+++|++.++.|+... .++.|..++++... ...... ......+..+++.+.
T Consensus 31 ~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 31 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRT--WKPTLVILRINRAARCVRWAPN 107 (372)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTE--EEEEEECCCCSSCEEEEEECTT
T ss_pred EEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc-CCCeEEEEECCCCe--eeeeEEeecCCCceeEEEECCC
Confidence 67788876632 3344445667789999999888777665 67889999887641 112222 233456788999886
Q ss_pred CCeEEEEeCCCCeEEEEECCCCce----EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCC----------
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKR----KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGD---------- 251 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~----~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~---------- 251 (395)
++.|+.+. ..+.|.+.+++.... ..+.........+++++|...+|+.... ...|...++...
T Consensus 108 ~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~ 184 (372)
T 1k8k_C 108 EKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC--DFKCRIFSAYIKEVEERPAPTP 184 (372)
T ss_dssp SSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET--TSCEEEEECCCTTTSCCCCCBT
T ss_pred CCEEEEEe-CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC--CCCEEEEEcccccccccccccc
Confidence 66666554 567888888877652 2222223567899999997777665542 345666664210
Q ss_pred ------CcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 252 ------PRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 252 ------~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
.......+..+......+++++.+..|+.+. ..+.|...+++...
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 185 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKM 235 (372)
T ss_dssp TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTT
T ss_pred cccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCCCc
Confidence 0122222223445678899987777666655 45677777765433
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.063 Score=49.72 Aligned_cols=157 Identities=11% Similarity=-0.044 Sum_probs=105.3
Q ss_pred CeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCce
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 209 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~ 209 (395)
.+..++|++.++.|+... .++.|..+++.... .....+......+.++++++.+..|+ +-...+.|.+.++.....
T Consensus 177 ~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGH-KDGKISKYDVSNNY--EYVDSIDLHEKSISDMQFSPDLTYFI-TSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp CEEEEEECGGGCEEEEEE-TTSEEEEEETTTTT--EEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTCCE
T ss_pred ceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCc--EeEEEEecCCCceeEEEECCCCCEEE-EecCCceEEEEECCCCce
Confidence 789999999888877665 67899999998631 33334444456788999998665555 445678999999987766
Q ss_pred EEEEecCCCCceeEEEeCCCCeEEEEeeCCCC------------eEEEEecCCCCcceEEEEecCCcCceeEEEeccccE
Q psy13629 210 KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVP------------KIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRL 277 (395)
Q Consensus 210 ~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~------------~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~r 277 (395)
...+ ........++++|...+++.+...... .|...+... ......+..+......+++.++++.
T Consensus 253 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~v~~~~~s~~~~~ 329 (369)
T 3zwl_B 253 LKKY-ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF--EEEIGRVQGHFGPLNTVAISPQGTS 329 (369)
T ss_dssp EEEE-ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSSE
T ss_pred eeee-cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC--CcchhheecccCcEEEEEECCCCCE
Confidence 6555 355678899999999988887633211 566666654 2333334445556778888876665
Q ss_pred EEEeccceeeeeeeccc
Q psy13629 278 LYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 278 LYwaD~~~~~I~~~~~d 294 (395)
|..+. .++.|..-+++
T Consensus 330 l~s~~-~dg~v~iw~~~ 345 (369)
T 3zwl_B 330 YASGG-EDGFIRLHHFE 345 (369)
T ss_dssp EEEEE-TTSEEEEEEEC
T ss_pred EEEEc-CCCeEEEEECc
Confidence 55443 34455444443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0068 Score=66.50 Aligned_cols=164 Identities=10% Similarity=0.023 Sum_probs=114.6
Q ss_pred EEEEeeCCCCCccEEecCCCC-CeEEEEEEcCCCEEEEEECCCCeEE-EEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLE-EGAAIDYYYKKSMVCWTDHGTEMIS-CCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~-~~~gl~~d~~~~~lywsd~~~~~I~-~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|.++++.+ .....+..... .+.+++|+ +++.|++... ...|+ .+++++. ....+. .....+..+++.+.+
T Consensus 318 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~---~~~~l~-~~~~~~~~~~~SpDG 390 (1045)
T 1k32_A 318 QAFIQDVSG-TYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTG---KAEKFE-ENLGNVFAMGVDRNG 390 (1045)
T ss_dssp EEEEECTTS-SBEEECSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTC---CEEECC-CCCCSEEEEEECTTS
T ss_pred EEEEEcCCC-CceEEccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCC---CceEec-CCccceeeeEECCCC
Confidence 566677665 33333444444 67788888 7777877764 66888 8888875 333333 444567899999988
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCC--------CCeEEEEecCCCCcceEEE
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE--------VPKIERGAMNGDPRHRKVI 258 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~--------~~~I~~~~~dG~~~~~~~l 258 (395)
+.|+++.. .+.|.+.++++.....+.........+++++|+.++|.++.... ...|+..++++ .. ...
T Consensus 391 ~~la~~~~-~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~--g~-~~~ 466 (1045)
T 1k32_A 391 KFAVVAND-RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG--RK-IFA 466 (1045)
T ss_dssp SEEEEEET-TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--TE-EEE
T ss_pred CEEEEECC-CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC--Cc-EEE
Confidence 88887764 56899999988777666644445568999999999898876421 25799999887 33 333
Q ss_pred EecCCcCceeEEEeccccEEEEecc
Q psy13629 259 VDSTIFWPNGIAIDFNNRLLYWIDG 283 (395)
Q Consensus 259 v~~~~~~P~glalD~~~~rLYwaD~ 283 (395)
+..+...+..+++++++++|||+..
T Consensus 467 l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 467 ATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp CSCSSSBEEEEEECTTSCEEEEEES
T ss_pred eeCCCcccCCceEcCCCCEEEEEec
Confidence 3344455777889989999999864
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.092 Score=48.34 Aligned_cols=183 Identities=9% Similarity=-0.009 Sum_probs=112.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+.........++|.+.++.|+... .++.|...+++.. .....+.........+++.+.+..
T Consensus 36 ~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~ 111 (304)
T 2ynn_A 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-DDFRIRVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKPY 111 (304)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-TTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSSE
T ss_pred cEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC-CCCEEEEEECCCC---cEEEEEeCCCCcEEEEEEcCCCCE
Confidence 678888876333334444556678999999888776554 7889999998865 333334444566889999986555
Q ss_pred EEEEeCCCCeEEEEECCCCce-EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 189 LYWTDSETNKLEVSSLDGKKR-KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~-~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
| .+-...+.|.+.++..... ...+.........++++|.++.++.+- +....|...++... .....+...+....+
T Consensus 112 l-~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg-s~D~~v~iwd~~~~-~~~~~~~~~~~~~v~ 188 (304)
T 2ynn_A 112 V-LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG-CLDRTVKVWSLGQS-TPNFTLTTGQERGVN 188 (304)
T ss_dssp E-EEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE-ETTSEEEEEETTCS-SCSEEEECCCTTCEE
T ss_pred E-EEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE-eCCCeEEEEECCCC-CccceeccCCcCcEE
Confidence 4 5666788999999876533 334434456678999999766655554 33566777777542 222233222222334
Q ss_pred eEEEecc-ccEEEEeccceeeeeeecccccee
Q psy13629 268 GIAIDFN-NRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 268 glalD~~-~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
.+.+.+. ++.+..+-...+.|..-++.....
T Consensus 189 ~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~ 220 (304)
T 2ynn_A 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (304)
T ss_dssp EEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence 4444432 333444444556666666654433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.072 Score=55.85 Aligned_cols=179 Identities=9% Similarity=-0.002 Sum_probs=116.6
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.+++|++.++.|.... .++.|..++++.. ............+..+++.+.+..
T Consensus 36 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~ 111 (814)
T 3mkq_A 36 RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-DDFRIRVFNYNTG---EKVVDFEAHPDYIRSIAVHPTKPY 111 (814)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-TTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSSE
T ss_pred EEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe-CCCeEEEEECCCC---cEEEEEecCCCCEEEEEEeCCCCE
Confidence 678888766334444555667789999999998888776 6889999998865 333344445567889999987777
Q ss_pred EEEEeCCCCeEEEEECCCC-ceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 189 LYWTDSETNKLEVSSLDGK-KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~-~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
|+.+. ..+.|.+.++++. .....+.........++++|.++.++++- +....|...++++. .....+........+
T Consensus 112 l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~ 188 (814)
T 3mkq_A 112 VLSGS-DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG-CLDRTVKVWSLGQS-TPNFTLTTGQERGVN 188 (814)
T ss_dssp EEEEE-TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE-ETTSEEEEEETTCS-SCSEEEECCCTTCCC
T ss_pred EEEEc-CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE-eCCCeEEEEECCCC-cceeEEecCCCCCEE
Confidence 76444 5789999999876 44444444556789999999555555554 23567888888652 233333333334566
Q ss_pred eEEEec--cccEEEEeccceeeeeeecccc
Q psy13629 268 GIAIDF--NNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 268 glalD~--~~~rLYwaD~~~~~I~~~~~dG 295 (395)
.+++.+ .+..|+.+. ..+.|...++..
T Consensus 189 ~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~ 217 (814)
T 3mkq_A 189 YVDYYPLPDKPYMITAS-DDLTIKIWDYQT 217 (814)
T ss_dssp EEEECCSTTCCEEEEEC-TTSEEEEEETTT
T ss_pred EEEEEECCCCCEEEEEe-CCCEEEEEECCC
Confidence 677765 444444443 345565555443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.33 E-value=0.072 Score=48.84 Aligned_cols=160 Identities=7% Similarity=-0.019 Sum_probs=106.7
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
....+.+++|++.++.|.... .++.|...+.... .....+.........+++.+.++.|+ +-...+.|.+.++..
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLLV-SASDDKTLKIWDVSS 96 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTT
T ss_pred cCCcEEEEEECCCCCEEEEee-CCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCCEEE-EECCCCEEEEEECCC
Confidence 446688999999888766554 7788988888654 33344444455678899998665555 555678999999987
Q ss_pred CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEecccee
Q psy13629 207 KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLT 286 (395)
Q Consensus 207 ~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~ 286 (395)
......+.........++++|...+|+... ....|...++.. ......+..+......+++++.+..|+.+. ..+
T Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~ 171 (312)
T 4ery_A 97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDG 171 (312)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEE--TTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTS
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCC--CEEEEEecCCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence 766555545566788999999887776654 245677788765 222223333334567788886666555554 456
Q ss_pred eeeeeccccc
Q psy13629 287 FIEVMDYDGY 296 (395)
Q Consensus 287 ~I~~~~~dG~ 296 (395)
.|...++...
T Consensus 172 ~i~~wd~~~~ 181 (312)
T 4ery_A 172 LCRIWDTASG 181 (312)
T ss_dssp CEEEEETTTC
T ss_pred cEEEEECCCC
Confidence 6666665443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.049 Score=57.10 Aligned_cols=179 Identities=9% Similarity=-0.030 Sum_probs=119.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+..++|++.++.|..+. .++.|..+++++.. ............+..+++.+..+.
T Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS-DDLTVKLWNWENNW--ALEQTFEGHEHFVMCVAFNPKDPS 154 (814)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSEEEEEEGGGTS--EEEEEEECCSSCEEEEEEETTEEE
T ss_pred eEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc-CCCEEEEEECCCCc--eEEEEEcCCCCcEEEEEEEcCCCC
Confidence 678888876444445555677899999999998887655 78899999988642 223344444556788998875666
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecC-CCCceeEEEeC--CCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcC
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWED-IDQPRAIALVP--QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFW 265 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~-~~~P~~iavdp--~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~ 265 (395)
++++-...+.|.+.++.+......+... ......++++| ...+|+... ....|...++.. ......+..+...
T Consensus 155 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~--~~~~~~~~~~~~~ 230 (814)
T 3mkq_A 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQT--KSCVATLEGHMSN 230 (814)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC--TTSEEEEEETTT--TEEEEEEECCSSC
T ss_pred EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe--CCCEEEEEECCC--CcEEEEEcCCCCC
Confidence 6667767899999999765544433333 36788899998 666666544 356788888765 3333333444556
Q ss_pred ceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 266 PNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 266 P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
...+++.+.+..|+.+. ..+.|...+...
T Consensus 231 v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~ 259 (814)
T 3mkq_A 231 VSFAVFHPTLPIIISGS-EDGTLKIWNSST 259 (814)
T ss_dssp EEEEEECSSSSEEEEEE-TTSCEEEEETTT
T ss_pred EEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Confidence 77888887666555443 345666666554
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.047 Score=52.89 Aligned_cols=179 Identities=10% Similarity=0.037 Sum_probs=115.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++.+......+......+.+++|++.++.|+ +...++.|...++... .....+.........++.++ .+.
T Consensus 173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~-s~s~D~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~-~g~ 247 (410)
T 1vyh_C 173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDKTIKMWEVQTG---YCVKTFTGHREWVRMVRPNQ-DGT 247 (410)
T ss_dssp CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEE-EEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECT-TSS
T ss_pred eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCC---cEEEEEeCCCccEEEEEECC-CCC
Confidence 567777765222223334556789999999887765 4447899999998764 22333344445567788876 455
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCC-------------------CeEEEEeeCCCCeEEEEecC
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD-------------------SIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~-------------------g~LYwtd~~~~~~I~~~~~d 249 (395)
+.++-...+.|.+.++........+.........++++|.. +.+.++- +....|...++.
T Consensus 248 ~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg-s~D~~i~iwd~~ 326 (410)
T 1vyh_C 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG-SRDKTIKMWDVS 326 (410)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE-ETTSEEEEEETT
T ss_pred EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE-eCCCeEEEEECC
Confidence 56676678899999998777665554555667888888853 3344554 335678888876
Q ss_pred CCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 250 GDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 250 G~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
. ......+..+..+..++++++.+..|+.+ ..++.|..-++...
T Consensus 327 ~--~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 327 T--GMCLMTLVGHDNWVRGVLFHSGGKFILSC-ADDKTLRVWDYKNK 370 (410)
T ss_dssp T--TEEEEEEECCSSCEEEEEECSSSSCEEEE-ETTTEEEEECCTTS
T ss_pred C--CceEEEEECCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCC
Confidence 4 22222333455567889998766666544 34566766666543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.029 Score=61.51 Aligned_cols=123 Identities=10% Similarity=0.054 Sum_probs=89.1
Q ss_pred EEE-EeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIR-IANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~-~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.+. ++++.+ .....+......+..++|+++++.|+++. ..+.|+.+++++. ....+.........++++.+.++
T Consensus 359 ~l~~~~d~~~-~~~~~l~~~~~~~~~~~~SpDG~~la~~~-~~~~v~~~d~~tg---~~~~~~~~~~~~v~~~~~SpDG~ 433 (1045)
T 1k32_A 359 DFLGIYDYRT-GKAEKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETG---KPTVIERSREAMITDFTISDNSR 433 (1045)
T ss_dssp EEEEEEETTT-CCEEECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTC---CEEEEEECSSSCCCCEEECTTSC
T ss_pred ceEEEEECCC-CCceEecCCccceeeeEECCCCCEEEEEC-CCCeEEEEECCCC---ceEEeccCCCCCccceEECCCCC
Confidence 556 667766 34344444556788999999999998876 5679999999865 33444434445568899999888
Q ss_pred eEEEEeCC---------CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEee
Q psy13629 188 KLYWTDSE---------TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDW 237 (395)
Q Consensus 188 ~LYwtd~~---------~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~ 237 (395)
.|.++... ...|.+.++++.....+. .....+..++++|+.++|||...
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~-~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEES
T ss_pred eEEEEecCccccccCCCCCeEEEEECCCCcEEEee-CCCcccCCceEcCCCCEEEEEec
Confidence 88877542 258999999886644333 44566788999999999998864
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.085 Score=49.43 Aligned_cols=163 Identities=6% Similarity=-0.038 Sum_probs=106.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.+++|++.++.+ .+...++.|...++... .....+......+.++++.+.+ +
T Consensus 165 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~sg~~d~~v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~-~ 239 (340)
T 1got_B 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF-VSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNG-N 239 (340)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTS-S
T ss_pred cEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE-EEEeCCCcEEEEECCCC---eeEEEEcCCcCCEEEEEEcCCC-C
Confidence 67778876633334444556778999999977654 45557889999998764 2233344444568899999854 4
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecC--CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWED--IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~--~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
++.+-...+.|.+.++........+... ......++++|...+|.... ....|...++.. ......+..+-...
T Consensus 240 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~d~~i~vwd~~~--~~~~~~~~~h~~~v 315 (340)
T 1got_B 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY--DDFNCNVWDALK--ADRAGVLAGHDNRV 315 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE--TTSEEEEEETTT--CCEEEEEECCSSCE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC--CCCeEEEEEccc--CcEeeEeecCCCcE
Confidence 5556667889999999876554444221 23468899999877776554 356788888765 33333344455566
Q ss_pred eeEEEeccccEEEE
Q psy13629 267 NGIAIDFNNRLLYW 280 (395)
Q Consensus 267 ~glalD~~~~rLYw 280 (395)
..+++.+++..|.-
T Consensus 316 ~~~~~s~dg~~l~s 329 (340)
T 1got_B 316 SCLGVTDDGMAVAT 329 (340)
T ss_dssp EEEEECTTSSCEEE
T ss_pred EEEEEcCCCCEEEE
Confidence 77777765554443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.069 Score=52.16 Aligned_cols=164 Identities=8% Similarity=-0.061 Sum_probs=100.7
Q ss_pred EEEEeeCCCCCccE----EecCCCCCeEEEEEEcC---CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEE
Q psy13629 109 DIRIANLSRPLKPV----TIIKDLEEGAAIDYYYK---KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~----~~~~~~~~~~gl~~d~~---~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glA 181 (395)
.|..+++....... .+......+.+++|++. ++.|+ +...++.|..++++... ............+..++
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~-s~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~ 248 (450)
T 2vdu_B 172 DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII-TSDRDEHIKISHYPQCF--IVDKWLFGHKHFVSSIC 248 (450)
T ss_dssp EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEE-EEETTSCEEEEEESCTT--CEEEECCCCSSCEEEEE
T ss_pred cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEE-EEcCCCcEEEEECCCCc--eeeeeecCCCCceEEEE
Confidence 46777765422111 23334567899999998 55555 44478899999988642 22333333445678899
Q ss_pred EecCCCeEEEEeCCCCeEEEEECCCCceEEEEec-------------------------CCCCceeEEEeCCCCeEEEEe
Q psy13629 182 IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-------------------------DIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 182 VD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~-------------------------~~~~P~~iavdp~~g~LYwtd 236 (395)
+. .++.| ++-...+.|.+.++........+.. ......+|+..|...+||.+.
T Consensus 249 ~s-d~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 249 CG-KDYLL-LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp EC-STTEE-EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred EC-CCCEE-EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 88 44455 4555778999999987665444421 123467899999888898876
Q ss_pred eCCCCeEEEEec--CCCCc-ceEEEEecCCcCceeEEEeccccEEEEe
Q psy13629 237 WGEVPKIERGAM--NGDPR-HRKVIVDSTIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 237 ~~~~~~I~~~~~--dG~~~-~~~~lv~~~~~~P~glalD~~~~rLYwa 281 (395)
.....|...++ ..... .....+..+ ..+..++++. +.++++
T Consensus 327 -~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~--~~~~v~ 370 (450)
T 2vdu_B 327 -EATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN--DEFQVT 370 (450)
T ss_dssp -TTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET--TEEEEE
T ss_pred -CCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC--CcEEEE
Confidence 33566777777 22001 111122223 5788888885 345555
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.021 Score=54.63 Aligned_cols=179 Identities=8% Similarity=0.011 Sum_probs=114.1
Q ss_pred EEEEeeCCCCCccEEe-cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~-~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.|++.++.. ...... ......+.+++|++.++.|+.. ..++.|..++++... ....+......+.++++.+.++
T Consensus 120 ~i~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~ 194 (420)
T 3vl1_A 120 DIKVLDSNF-NLQREIDQAHVSEITKLKFFPSGEALISS-SQDMQLKIWSVKDGS---NPRTLIGHRATVTDIAIIDRGR 194 (420)
T ss_dssp CEEEECTTS-CEEEEETTSSSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCC---CCEEEECCSSCEEEEEEETTTT
T ss_pred CEEEEeCCC-cceeeecccccCccEEEEECCCCCEEEEE-eCCCeEEEEeCCCCc---CceEEcCCCCcEEEEEEcCCCC
Confidence 678888876 343333 4567789999999988766654 478899999998652 2233344456788999998666
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecC------------------------CCCceeEEEeCCCCeEEEEeeCCCCeE
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWED------------------------IDQPRAIALVPQDSIMFWTDWGEVPKI 243 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~------------------------~~~P~~iavdp~~g~LYwtd~~~~~~I 243 (395)
.|+ +-...+.|.+.++........+... ......++++|...+|+... ....|
T Consensus 195 ~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i 271 (420)
T 3vl1_A 195 NVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH--VSGVI 271 (420)
T ss_dssp EEE-EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE--TTSCE
T ss_pred EEE-EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc--CCCeE
Confidence 665 5556788999998866555444221 13334455667665665544 24567
Q ss_pred EEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 244 ERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 244 ~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
...++... .....+...+......+++++.+..++++-...+.|...++...
T Consensus 272 ~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 272 TVHNVFSK-EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp EEEETTTC-CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred EEEECCCC-ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 77887651 22222323344567889998777734444445577877777654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.048 Score=51.69 Aligned_cols=178 Identities=4% Similarity=-0.119 Sum_probs=114.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCC------------
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT------------ 176 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~------------ 176 (395)
.|++.+.++ .....+......+.+++|++.++.|+... .++.|..+++... .....+......
T Consensus 131 ~i~i~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 205 (425)
T 1r5m_A 131 ELRLWNKTG-ALLNVLNFHRAPIVSVKWNKDGTHIISMD-VENVTILWNVISG---TVMQHFELKETGGSSINAENHSGD 205 (425)
T ss_dssp CEEEEETTS-CEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCCEEEEETTTT---EEEEEECCC---------------
T ss_pred eEEEEeCCC-CeeeeccCCCccEEEEEECCCCCEEEEEe-cCCeEEEEECCCC---cEEEEeeccccCccceeeccccCC
Confidence 577777544 44445555677899999999888887665 6788999998764 222222222222
Q ss_pred ---cceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc
Q psy13629 177 ---PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR 253 (395)
Q Consensus 177 ---p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~ 253 (395)
+..+++.+ .+. +++-...+.|.+.++........+.........++++|...+|+.+. ....|...++.. .
T Consensus 206 ~~~~~~~~~~~-~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~--~ 279 (425)
T 1r5m_A 206 GSLGVDVEWVD-DDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS--DDGTLRIWHGGN--G 279 (425)
T ss_dssp CCCBSCCEEEE-TTE-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE--TTSCEEEECSSS--B
T ss_pred cceeeEEEEcC-CCE-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc--CCCEEEEEECCC--C
Confidence 66777765 344 55666678999999987665555544556678999999887776655 245677777765 2
Q ss_pred ceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 254 HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 254 ~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
.....+..+-.....+++...+ ++++-...+.|...++......
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLL 323 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEE
T ss_pred ccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEe
Confidence 2222333344567788888655 4455555677877777544433
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.13 Score=47.75 Aligned_cols=175 Identities=10% Similarity=0.032 Sum_probs=113.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC--
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT-- 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~-- 186 (395)
.|++.++........+......+.+++|++.++.|. +...++.|...++++. . ...+.........+++.+..
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~D~~i~vwd~~~~---~-~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII-SGSRDKTIKVWTIKGQ---C-LATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEE-EEETTSCEEEEETTSC---E-EEEECCCSSCEEEEEECCC---
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCC---e-EEEEeccCCcEEEEEEccCCCC
Confidence 788888876444445556677889999998877655 5557889999999874 2 22333333455667765532
Q ss_pred ---CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCC
Q psy13629 187 ---EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 187 ---~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+.+.++-...+.|.+.++........+.......+.++++|...+|.-+. ....|...++.. ......+ ..-
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~--~dg~i~iwd~~~--~~~~~~~-~~~ 237 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIMLWNLAA--KKAMYTL-SAQ 237 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE--TTCEEEEEETTT--TEEEEEE-ECC
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCC--CcEEEEe-cCC
Confidence 33556666788999999987665554544566788999999776665443 356788888875 2221112 222
Q ss_pred cCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
.....+++.+.+..|..+.... |...+++.
T Consensus 238 ~~v~~~~~sp~~~~la~~~~~~--i~v~~~~~ 267 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATATG--IKVFSLDP 267 (319)
T ss_dssp SCEEEEEECSSSSEEEEEETTE--EEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEEcCCC--cEEEEeCc
Confidence 3577888888877777665443 44444443
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.21 E-value=0.039 Score=52.27 Aligned_cols=116 Identities=4% Similarity=-0.108 Sum_probs=81.3
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC---C---CCCcceEEEecCCCeEEEEeCCC---C
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN---G---LITPDGLAIDWLTEKLYWTDSET---N 197 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~---~---~~~p~glAVD~~~~~LYwtd~~~---~ 197 (395)
....+.+++|++.+ ++++...++.|..+++... .....+.. . ...+..+++++.+..|+.+ ... +
T Consensus 185 ~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~-~~d~~~g 258 (397)
T 1sq9_A 185 PSQFATSVDISERG--LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA-HDSNSFG 258 (397)
T ss_dssp SCCCCCEEEECTTS--EEEEECTTSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEECSSTTEEEEE-EEETTEE
T ss_pred CCCCceEEEECCCc--eEEEEeCCCcEEEEECCCC---ceeEEEeccccccccCCccceEEECCCCCEEEEE-ecCCCCc
Confidence 45678899999987 5556668899999999864 22233333 2 5568899998866655544 345 7
Q ss_pred eEEEEECCCCceEEEEec-------------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 198 KLEVSSLDGKKRKVLYWE-------------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 198 ~I~v~~ldg~~~~~l~~~-------------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
.|.+.++........+.. .......++++|...+|+... ....|...++..
T Consensus 259 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~ 322 (397)
T 1sq9_A 259 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG--WDGKLRFWDVKT 322 (397)
T ss_dssp EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTT
T ss_pred eEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe--CCCeEEEEEcCC
Confidence 899999976655554533 456678999999887776554 356788888865
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.13 Score=47.24 Aligned_cols=180 Identities=10% Similarity=-0.004 Sum_probs=113.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.+++|++.++.|+ +...++.|...+++... ...............+++++.++.
T Consensus 78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMCVAFNPKDPS 154 (304)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEE-EEETTSCEEEEEGGGTT--EEEEEECCCCSCEEEEEECTTCTT
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEE-EECCCCeEEEEECCCCc--chhhhhcccCCcEEEEEECCCCCC
Confidence 688888876444445555677789999999887665 55578999999987542 222333444456788999886777
Q ss_pred EEEEeCCCCeEEEEECCCCceE-EEEecCCCCceeEEEeCC-CCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRK-VLYWEDIDQPRAIALVPQ-DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~-~l~~~~~~~P~~iavdp~-~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
+..+-...+.|.+.++...... .+..........+.+.|. ++.+..+- +....|...++.. ......+..+....
T Consensus 155 ~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-s~D~~i~iWd~~~--~~~~~~~~~h~~~v 231 (304)
T 2ynn_A 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA-SDDLTIKIWDYQT--KSCVATLEGHMSNV 231 (304)
T ss_dssp EEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE-ETTSEEEEEETTT--TEEEEEEECCSSCE
T ss_pred EEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE-cCCCeEEEEeCCC--CccceeeCCCCCCE
Confidence 7777778899999998665443 333222344566777763 23333343 3356788888765 23333334455566
Q ss_pred eeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
..+++.+.+..|. +-..++.|..-+...
T Consensus 232 ~~~~~~p~~~~l~-s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 232 SFAVFHPTLPIII-SGSEDGTLKIWNSST 259 (304)
T ss_dssp EEEEECSSSSEEE-EEETTSCEEEEETTT
T ss_pred EEEEECCCCCEEE-EEcCCCeEEEEECCC
Confidence 7778876655444 333456666655544
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.12 Score=50.04 Aligned_cols=157 Identities=7% Similarity=-0.010 Sum_probs=101.5
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.+++|++.++.|. +...++.|..+++++. .....+.........+++.+.++.
T Consensus 131 ~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~-sgs~D~~i~iwd~~~~---~~~~~~~~h~~~V~~v~~~p~~~~ 206 (410)
T 1vyh_C 131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA-SCSADMTIKLWDFQGF---ECIRTMHGHDHNVSSVSIMPNGDH 206 (410)
T ss_dssp CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEE-EEETTSCCCEEETTSS---CEEECCCCCSSCEEEEEECSSSSE
T ss_pred eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC---ceeEEEcCCCCCEEEEEEeCCCCE
Confidence 688888876444445555667889999998777554 5557889999998764 222222233456788999885555
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
| ++-...+.|.+.++....+...+.......+.++++|....|.-+. ....|...++.. ......+..+-.....
T Consensus 207 l-~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s--~D~~v~vwd~~~--~~~~~~~~~h~~~v~~ 281 (410)
T 1vyh_C 207 I-VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS--NDQTVRVWVVAT--KECKAELREHRHVVEC 281 (410)
T ss_dssp E-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTT--CCEEEEECCCSSCEEE
T ss_pred E-EEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc--CCCeEEEEECCC--CceeeEecCCCceEEE
Confidence 5 5666788999999987766555545556678899988665554433 345677777765 2333333334344566
Q ss_pred EEEecc
Q psy13629 269 IAIDFN 274 (395)
Q Consensus 269 lalD~~ 274 (395)
+++.+.
T Consensus 282 ~~~~~~ 287 (410)
T 1vyh_C 282 ISWAPE 287 (410)
T ss_dssp EEECCS
T ss_pred EEEcCc
Confidence 666543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.19 E-value=0.057 Score=50.38 Aligned_cols=179 Identities=12% Similarity=0.016 Sum_probs=108.7
Q ss_pred EEEEeeCCCCCc--cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eCCCCCcceEEEecC
Q psy13629 109 DIRIANLSRPLK--PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~~~--~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~~~~~p~glAVD~~ 185 (395)
.|++.++..... ..........+..++|++.++.|+... .++.|..++++........... ......+..+++.+.
T Consensus 75 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 153 (372)
T 1k8k_C 75 NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 153 (372)
T ss_dssp CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC
Confidence 466666655221 112234556789999999888777766 6788888888765211112222 223456888999885
Q ss_pred CCeEEEEeCCCCeEEEEECC------------------CCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe
Q psy13629 186 TEKLYWTDSETNKLEVSSLD------------------GKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA 247 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ld------------------g~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~ 247 (395)
++.| ++-...+.|.+.++. .......+........+++++|...+|+.+. ....|...+
T Consensus 154 ~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d 230 (372)
T 1k8k_C 154 SVLL-AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS--HDSTVCLAD 230 (372)
T ss_dssp SSEE-EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE--TTTEEEEEE
T ss_pred CCEE-EEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe--CCCEEEEEE
Confidence 5544 455567889999964 2222222323455688999999877777655 356788888
Q ss_pred cCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 248 MNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 248 ~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
+.. ......+..+......++++..+..|..+ ..+.|...+++.
T Consensus 231 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~i~~~~~ 274 (372)
T 1k8k_C 231 ADK--KMAVATLASETLPLLAVTFITESSLVAAG--HDCFPVLFTYDS 274 (372)
T ss_dssp GGG--TTEEEEEECSSCCEEEEEEEETTEEEEEE--TTSSCEEEEEET
T ss_pred CCC--CceeEEEccCCCCeEEEEEecCCCEEEEE--eCCeEEEEEccC
Confidence 864 23333333444456788888666544444 455665555544
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.15 Score=47.16 Aligned_cols=170 Identities=8% Similarity=-0.059 Sum_probs=111.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC----CCeEEEEEccCCCCCceEE--------EEe--CCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG----TEMISCCTFDGNNVGSKHN--------VIT--NGL 174 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~----~~~I~~~~~dg~~~~~~~~--------i~~--~~~ 174 (395)
.|++.++.. .+..........+.+++|++.++.++.+... .+.|..++++......... .+. ...
T Consensus 97 ~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 97 SIKLWDVSN-GQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEEEEETTT-CCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred eEEEEECCC-CcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 688888876 3444444467789999999999888877632 2788888876542111111 111 112
Q ss_pred CCcceEEEecCCCeEEEEeCCCCeEEEEECCC-CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc
Q psy13629 175 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG-KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR 253 (395)
Q Consensus 175 ~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg-~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~ 253 (395)
..+..+++++.++.|+... ..+.|.+.++.. ......+........+++++|...+|+.+. ....|...++.. .
T Consensus 176 ~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~--~ 250 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS--RDTNSFLVDVST--L 250 (369)
T ss_dssp CCEEEEEECGGGCEEEEEE-TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTT--C
T ss_pred cceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec--CCceEEEEECCC--C
Confidence 2778899988666666544 568999999987 444444445566789999999877776654 246788888875 2
Q ss_pred ceEEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 254 HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 254 ~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
.....+. .-.....++++..+..|+.+....
T Consensus 251 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 251 QVLKKYE-TDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC
T ss_pred ceeeeec-CCCCceeEEecCCCceEEEeecCC
Confidence 2222222 334577888988888888776543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0096 Score=58.16 Aligned_cols=161 Identities=9% Similarity=0.017 Sum_probs=109.4
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
....+.+|+|+|....+..+...++.|...+++... ....+.. ..-....+|++.+.++++.++-...+.|.+.++.
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS--CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 345689999999777677777788999999987642 1122222 2335688999988777777788888999999999
Q ss_pred CCceEEEEecC--CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEecc
Q psy13629 206 GKKRKVLYWED--IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDG 283 (395)
Q Consensus 206 g~~~~~l~~~~--~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~ 283 (395)
+.....+.... ......++++|...+|.... ....|...+++| ..... +..+-...+.+++++.++.++.+-.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~dg~i~~wd~~~--~~~~~-~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGD--NVGNVILLNMDG--KELWN-LRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC--SSSBEEEEESSS--CBCCC-SBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEe--CCCcEeeeccCc--ceeEE-EecccceEEeeeecCCCceEEEEec
Confidence 87776665432 23457899999777666544 356788888887 22221 2233445778888877776766655
Q ss_pred ceeeeeeeccc
Q psy13629 284 RLTFIEVMDYD 294 (395)
Q Consensus 284 ~~~~I~~~~~d 294 (395)
.++.|..-++.
T Consensus 271 ~d~~v~iwd~~ 281 (435)
T 4e54_B 271 VDQTVKIWDLR 281 (435)
T ss_dssp TTSBCCEEETT
T ss_pred CcceeeEEecc
Confidence 55666555543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.12 Score=49.39 Aligned_cols=180 Identities=4% Similarity=-0.069 Sum_probs=113.8
Q ss_pred EEEEeeCCCCCccEEe-----cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 109 DIRIANLSRPLKPVTI-----IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~-----~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
.|++.++........+ ......+..+++.+.++.++.+...++.|...++.... .....+......+..+++.
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~--~~~~~~~~h~~~v~~v~~~ 258 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS--RAVRTYHGHEGDINSVKFF 258 (380)
T ss_dssp CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC--CCCEEECCCSSCCCEEEEC
T ss_pred cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC--cceEEECCcCCCeEEEEEe
Confidence 6788888663333322 22345678899988677788888789999999987331 1122333344568899999
Q ss_pred cCCCeEEEEeCCCCeEEEEECCCCceEEEEecC-------CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceE
Q psy13629 184 WLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED-------IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRK 256 (395)
Q Consensus 184 ~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~-------~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~ 256 (395)
+. +..+.+-...+.|.+.++........+... ......++++|.+.+|+... ....|...+... ....
T Consensus 259 p~-~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg~i~vwd~~~--~~~~ 333 (380)
T 3iz6_a 259 PD-GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY--SNGDCYVWDTLL--AEMV 333 (380)
T ss_dssp TT-SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC--TTSCEEEEETTT--CCEE
T ss_pred cC-CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE--CCCCEEEEECCC--CceE
Confidence 84 455567778899999999877665554321 12357899999877776543 355677777654 2222
Q ss_pred EEE----ecCCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 257 VIV----DSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 257 ~lv----~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
.-. ..+....+.+++.+++..|.-+ +.++.|..-++.+.
T Consensus 334 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sg-s~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 334 LNLGTLQNSHEGRISCLGLSSDGSALCTG-SWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECCSCSSCCCCCCEEEECSSSSEEEEE-CTTSCEEEEECCSS
T ss_pred EEEecccCCCCCceEEEEECCCCCEEEEe-eCCCCEEEEecCCC
Confidence 222 2344567788888766655444 33455555555443
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=97.10 E-value=0.11 Score=49.09 Aligned_cols=182 Identities=12% Similarity=-0.022 Sum_probs=111.8
Q ss_pred EEEEeeCCCCCc-----cEEecCC-----CCCeEEEEEE----cCCCE-EEEEECCCCeEEEEEccC------CCCCc--
Q psy13629 109 DIRIANLSRPLK-----PVTIIKD-----LEEGAAIDYY----YKKSM-VCWTDHGTEMISCCTFDG------NNVGS-- 165 (395)
Q Consensus 109 ~I~~~~l~~~~~-----~~~~~~~-----~~~~~gl~~d----~~~~~-lywsd~~~~~I~~~~~dg------~~~~~-- 165 (395)
.|+++++..... ...+... ...+.+++|+ +.++. |+... .++.|..+++.. .....
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 170 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD-VKGTTYIWKFHPFADESNSLTLNWS 170 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE-TTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe-CCCcEEEEeCCccccccccceeecc
Confidence 566666655222 3333333 2778999999 88887 55544 678888888775 22111
Q ss_pred eE-EEE------eCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEec---C---CCCceeEEEeCCCCeE
Q psy13629 166 KH-NVI------TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE---D---IDQPRAIALVPQDSIM 232 (395)
Q Consensus 166 ~~-~i~------~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~---~---~~~P~~iavdp~~g~L 232 (395)
.. .+. ......+..+++.+.+ ++++-...+.|.+.++........+.. . ......++++|...+|
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l 248 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 248 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEE
Confidence 01 222 2234568899999855 666667789999999987665555534 3 6678999999988777
Q ss_pred EEEeeC-CCCeEEEEecCCCCcceEEEEec-------------CCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 233 FWTDWG-EVPKIERGAMNGDPRHRKVIVDS-------------TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 233 Ywtd~~-~~~~I~~~~~dG~~~~~~~lv~~-------------~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
+.+... ....|...++.. ......+.. +-.....+++++.++.|+.+. ..+.|...++...
T Consensus 249 ~~~~~d~~~g~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 249 AIAHDSNSFGCITLYETEF--GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTK 323 (397)
T ss_dssp EEEEEETTEEEEEEEETTT--CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTT
T ss_pred EEEecCCCCceEEEEECCC--CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCC
Confidence 765521 115788888765 232222333 445677888887766665554 4566766666543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.16 Score=48.65 Aligned_cols=155 Identities=6% Similarity=-0.057 Sum_probs=99.2
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceE
Q psy13629 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 210 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~ 210 (395)
+.+++|++.++.|+... .++.|..++++.. .....+.........+++.+.++.|+ +-...+.|.+.++......
T Consensus 126 v~~v~~s~dg~~l~s~~-~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~v~iwd~~~~~~~ 200 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGA-EDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRTGQCS 200 (393)
T ss_dssp EEEEEECTTSSEEEEEE-TTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEc-CCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEE-EecCCCcEEEEECCCCeeE
Confidence 67899999888776554 7889999999865 23333444445678899988666665 5556789999999876665
Q ss_pred EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEE------ecCCcCceeEEEeccccEEEEeccc
Q psy13629 211 VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIV------DSTIFWPNGIAIDFNNRLLYWIDGR 284 (395)
Q Consensus 211 ~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv------~~~~~~P~glalD~~~~rLYwaD~~ 284 (395)
..+ ........++++|.++.++.+- +....|...++... .....+. ..+......++++++++.|+.+. .
T Consensus 201 ~~~-~~~~~v~~~~~~~~~~~~l~~~-s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~ 276 (393)
T 1erj_A 201 LTL-SIEDGVTTVAVSPGDGKYIAAG-SLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-L 276 (393)
T ss_dssp EEE-ECSSCEEEEEECSTTCCEEEEE-ETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred EEE-EcCCCcEEEEEECCCCCEEEEE-cCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-C
Confidence 444 3445678899999666555554 33456777776541 1111111 12334567888887776665543 3
Q ss_pred eeeeeeeccc
Q psy13629 285 LTFIEVMDYD 294 (395)
Q Consensus 285 ~~~I~~~~~d 294 (395)
++.|..-++.
T Consensus 277 d~~v~~wd~~ 286 (393)
T 1erj_A 277 DRSVKLWNLQ 286 (393)
T ss_dssp TSEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 4556555554
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.15 Score=48.21 Aligned_cols=166 Identities=5% Similarity=-0.048 Sum_probs=107.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCC-CEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKK-SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~-~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.|++.++........+......+..+++.+.. +.++++...++.|...++... ..............++++.+.+
T Consensus 177 ~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~- 252 (354)
T 2pbi_B 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---QCVQAFETHESDVNSVRYYPSG- 252 (354)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTS-
T ss_pred cEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCCeEEEEEeCCC-
Confidence 68888887633344444556677888887753 356666668899999998864 2233333344567889998855
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecC--CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcC
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWED--IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFW 265 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~--~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~ 265 (395)
.++.+-...+.|.+.++............ ......++++|...+|+... ....|...++.. ......+..+...
T Consensus 253 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~--~d~~i~vwd~~~--~~~~~~l~~h~~~ 328 (354)
T 2pbi_B 253 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY--NDYTINVWDVLK--GSRVSILFGHENR 328 (354)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE--TTSCEEEEETTT--CSEEEEECCCSSC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE--CCCcEEEEECCC--CceEEEEECCCCc
Confidence 45556667889999999876655554322 23567899999877776554 245677777743 2232333345556
Q ss_pred ceeEEEeccccEEEEec
Q psy13629 266 PNGIAIDFNNRLLYWID 282 (395)
Q Consensus 266 P~glalD~~~~rLYwaD 282 (395)
...+++.+++..|..+.
T Consensus 329 v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 329 VSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp EEEEEECTTSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEc
Confidence 77888887666555443
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.19 Score=50.29 Aligned_cols=179 Identities=7% Similarity=-0.050 Sum_probs=111.2
Q ss_pred EEEEeeCCCC----CccEEecCCCCC-eEEEEEEc--CCCEEEEEECCCCeEEEEEccCC------CCCceEEEEeCCCC
Q psy13629 109 DIRIANLSRP----LKPVTIIKDLEE-GAAIDYYY--KKSMVCWTDHGTEMISCCTFDGN------NVGSKHNVITNGLI 175 (395)
Q Consensus 109 ~I~~~~l~~~----~~~~~~~~~~~~-~~gl~~d~--~~~~lywsd~~~~~I~~~~~dg~------~~~~~~~i~~~~~~ 175 (395)
.|++.+++.. .....+...... +.+++|++ .++.|+... .++.|..++++.. .. .....+.....
T Consensus 40 ~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~-~dg~v~vw~~~~~~~~~~~~~-~~~~~~~~~~~ 117 (615)
T 1pgu_A 40 SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-ESGKVIVWGWTFDKESNSVEV-NVKSEFQVLAG 117 (615)
T ss_dssp EEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-TTSEEEEEEEEEEGGGTEEEE-EEEEEEECCSS
T ss_pred eEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec-CCCEEEEEeCCCCcccccccc-cccchhhcccc
Confidence 6788888763 344455556667 89999999 877776555 6788988888521 00 11223333446
Q ss_pred CcceEEEecCCCeEEEEeCCC---CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC
Q psy13629 176 TPDGLAIDWLTEKLYWTDSET---NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP 252 (395)
Q Consensus 176 ~p~glAVD~~~~~LYwtd~~~---~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~ 252 (395)
.+..+++.+.++.|+.+.... +.|.+.+ .......+.........++++|.+..++.+- +....|...+...
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~d~~v~vwd~~~-- 192 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTV-GDDGSVVFYQGPP-- 192 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEE-ETTTEEEEEETTT--
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEE-eCCCcEEEEeCCC--
Confidence 788999999888887776432 4566555 2223333334566789999999887555554 3356777777765
Q ss_pred cceEEEEecCCc---CceeEEEecc-ccEEEEeccceeeeeeecccc
Q psy13629 253 RHRKVIVDSTIF---WPNGIAIDFN-NRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 253 ~~~~~lv~~~~~---~P~glalD~~-~~rLYwaD~~~~~I~~~~~dG 295 (395)
......+..+.. ....+++++. +..|+.+. ..+.|...++..
T Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~ 238 (615)
T 1pgu_A 193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDGKS 238 (615)
T ss_dssp BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE-TTCCEEEEETTT
T ss_pred cceeeeecccCCCCceEEEEEECCCCCCEEEEEe-CCCeEEEEECCC
Confidence 233233333444 5678888877 55555544 345666666543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.067 Score=55.87 Aligned_cols=182 Identities=8% Similarity=0.017 Sum_probs=109.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC---------------CeEEEEEccCCCCCceEEEEeCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT---------------EMISCCTFDGNNVGSKHNVITNG 173 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~---------------~~I~~~~~dg~~~~~~~~i~~~~ 173 (395)
.|+++++++........... ...+++|.++++.||++.... ..|++.++.+.. ....++...
T Consensus 152 ~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~--~~~~~v~~~ 228 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ--SEDILCAEF 228 (710)
T ss_dssp EEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG--GGCEEEECC
T ss_pred EEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc--ccceEEecc
Confidence 78889998733222222222 246789999999999986432 348988887642 112333332
Q ss_pred C---CCcceEEEecCCCeEEEEeC-C---CCeEEEEECCC------C--ceEEEEecCCCCceeEEEeCCCCeEEEEeeC
Q psy13629 174 L---ITPDGLAIDWLTEKLYWTDS-E---TNKLEVSSLDG------K--KRKVLYWEDIDQPRAIALVPQDSIMFWTDWG 238 (395)
Q Consensus 174 ~---~~p~glAVD~~~~~LYwtd~-~---~~~I~v~~ldg------~--~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~ 238 (395)
. ....++++.+.++.|+++.. . ...|.+.++++ . ..+.+. .....-. -.+++.++.||+....
T Consensus 229 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~-~~~~~~~-~~~s~dg~~l~~~s~~ 306 (710)
T 2xdw_A 229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI-DNFEGEY-DYVTNEGTVFTFKTNR 306 (710)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE-CSSSSCE-EEEEEETTEEEEEECT
T ss_pred CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee-CCCCcEE-EEEeccCCEEEEEECC
Confidence 2 22458899998888888753 2 57899999985 3 234444 3222222 3578888888887532
Q ss_pred --CCCeEEEEecCCCCc-ceEEEEecCC-cCceeEEEeccccEEEEecc--ceeeeeeecc-ccc
Q psy13629 239 --EVPKIERGAMNGDPR-HRKVIVDSTI-FWPNGIAIDFNNRLLYWIDG--RLTFIEVMDY-DGY 296 (395)
Q Consensus 239 --~~~~I~~~~~dG~~~-~~~~lv~~~~-~~P~glalD~~~~rLYwaD~--~~~~I~~~~~-dG~ 296 (395)
...+|.++++++... .-+.++...- ....++++. .+++|+++-. ...+|...++ +|.
T Consensus 307 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 307 HSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp TCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred CCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCCC
Confidence 256899999987211 1245554421 234556655 4666776643 3346777777 554
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.17 Score=48.48 Aligned_cols=179 Identities=8% Similarity=-0.046 Sum_probs=109.5
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.+++|++.++.|+-. ..++.|...++... . ..........+..+++.+..++
T Consensus 146 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-s~d~~v~iwd~~~~---~-~~~~~~~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 146 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG-SGDRTVRIWDLRTG---Q-CSLTLSIEDGVTTVAVSPGDGK 220 (393)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTT---E-EEEEEECSSCEEEEEECSTTCC
T ss_pred eEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEe-cCCCcEEEEECCCC---e-eEEEEEcCCCcEEEEEECCCCC
Confidence 68888887633334444566778999999988877644 47889999998764 2 2222223345778888886777
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEe-------cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc--------
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYW-------EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR-------- 253 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~-------~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~-------- 253 (395)
+..+-...+.|.+.++........+. .......+++++|...+|+-.. ....|...++.....
T Consensus 221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s--~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS--LDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEEC-------------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe--CCCEEEEEECCCCCCcccccCCC
Confidence 77777778899999988665443331 1234578899999877776543 245566666643100
Q ss_pred --ceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 254 --HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 254 --~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
........+......+++...+..|..+ ..++.|..-+...
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg-s~D~~v~iwd~~~ 341 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSG-SKDRGVLFWDKKS 341 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEE-ETTSEEEEEETTT
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEE-eCCCeEEEEECCC
Confidence 0111122233456677777555554433 3445565555543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.033 Score=57.77 Aligned_cols=122 Identities=8% Similarity=0.035 Sum_probs=82.1
Q ss_pred EEEEeeCCCCCccEEecCCCC----CeEEEEEEcCCCEEEEEECC--------CCeEEEEEccCCCCCceEEEEeCCC--
Q psy13629 109 DIRIANLSRPLKPVTIIKDLE----EGAAIDYYYKKSMVCWTDHG--------TEMISCCTFDGNNVGSKHNVITNGL-- 174 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~----~~~gl~~d~~~~~lywsd~~--------~~~I~~~~~dg~~~~~~~~i~~~~~-- 174 (395)
.|++.++.+ .+...+..... .+.+++|+++++.|.++... .+.|+..++++.. ...+.....
T Consensus 38 ~i~~~d~~~-g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~ 113 (723)
T 1xfd_A 38 TVRLWNVET-NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD---PQSLDPPEVSN 113 (723)
T ss_dssp CEEEBCGGG-CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC---CEECCCTTCCS
T ss_pred CEEEEECCC-CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc---eEeccCCcccc
Confidence 677788766 33333333322 37899999999988877532 2678889988752 222222111
Q ss_pred CCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCC------------------CceeEEEeCCCCeEEEEe
Q psy13629 175 ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID------------------QPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 175 ~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~------------------~P~~iavdp~~g~LYwtd 236 (395)
..+..+++.+.++.|.++.. +.|.+.++++.....+...... ...+++.+|++++|+++.
T Consensus 114 ~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 114 AKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp CCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred ccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence 12677889998888888765 6899999998776666533221 347899999998887765
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0077 Score=60.27 Aligned_cols=135 Identities=7% Similarity=-0.033 Sum_probs=83.3
Q ss_pred EEEEeeCCCCC-------------------ccEEecCCCCCeEEEEEEcCCC------EEEEEEC-C----CCeEEEEEc
Q psy13629 109 DIRIANLSRPL-------------------KPVTIIKDLEEGAAIDYYYKKS------MVCWTDH-G----TEMISCCTF 158 (395)
Q Consensus 109 ~I~~~~l~~~~-------------------~~~~~~~~~~~~~gl~~d~~~~------~lywsd~-~----~~~I~~~~~ 158 (395)
.|.+++.++.. ...+.+-++.++.||+||+.++ .+|.+|. . ...|..+..
T Consensus 178 kIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~ 257 (463)
T 2wg3_C 178 SVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIK 257 (463)
T ss_dssp EEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEEEC-
T ss_pred eEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEeeecc
Confidence 68888888731 3467888999999999999854 6787885 2 234555432
Q ss_pred cCCCC-CceEEEEeCCC--CCcceEEE-------ecCCCeEEEEeCCCCeEEEEECCCCc---eEEEE-e--------cC
Q psy13629 159 DGNNV-GSKHNVITNGL--ITPDGLAI-------DWLTEKLYWTDSETNKLEVSSLDGKK---RKVLY-W--------ED 216 (395)
Q Consensus 159 dg~~~-~~~~~i~~~~~--~~p~glAV-------D~~~~~LYwtd~~~~~I~v~~ldg~~---~~~l~-~--------~~ 216 (395)
|... ........... ..|.|+++ .| .+.+|+++.. ++|.+..+++.. ....+ . ..
T Consensus 258 -G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~-~g~~f~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 334 (463)
T 2wg3_C 258 -GKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERL-YGSYVFGDRN-GNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYF 334 (463)
T ss_dssp ----CCSCCCCEECCC----CEEEEEECCCSSCTTT-TTCEEEEETT-SCEEEEEC-----CCEEEEECEEETTSSCSCC
T ss_pred -CCCCCCCCCeEEeeCCCCccccceEEEeCCCChhh-cceEEEecCC-CcEEEEEeCCCCceeeEEEeecCCcccccccc
Confidence 2211 01111222211 57899998 33 4568888876 789988886542 22333 1 12
Q ss_pred CCCceeEEEeCCCCeEEEEeeC------CCCeEEEEe
Q psy13629 217 IDQPRAIALVPQDSIMFWTDWG------EVPKIERGA 247 (395)
Q Consensus 217 ~~~P~~iavdp~~g~LYwtd~~------~~~~I~~~~ 247 (395)
...|.+++++| .|.||++++. ...+|+|+.
T Consensus 335 ~~r~~~v~~~p-dG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 335 SGHILGFGEDE-LGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp CSEEEEEEECT-TCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred cCcceEEEECC-CCCEEEEeccCCcccCCCCcEEEec
Confidence 46799999998 5799999984 356777775
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.13 Score=47.73 Aligned_cols=181 Identities=9% Similarity=0.032 Sum_probs=109.1
Q ss_pred EEEEeeCCCCC--ccEEecCCCCCeEEEEEEcC--CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRPL--KPVTIIKDLEEGAAIDYYYK--KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~--~~~~~~~~~~~~~gl~~d~~--~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.|++.++.... ...........+.+++|++. ++.|+... .++.|..++++..... ..............+++.+
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~-~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS-SDGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TTSEEEEEECCTTSCC-CEEEEECCTTCEEEEEECC
T ss_pred EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec-CCCcEEEEecCCCCce-eeEEecCCCCceEEEEEcC
Confidence 56777776522 23333445677899999998 66665554 7889999998865321 2233344455677888887
Q ss_pred C------------CCeEEEEeCCCCeEEEEECCCCceE-E---EEecCCCCceeEEEeCC---CCeEEEEeeCCCCeEEE
Q psy13629 185 L------------TEKLYWTDSETNKLEVSSLDGKKRK-V---LYWEDIDQPRAIALVPQ---DSIMFWTDWGEVPKIER 245 (395)
Q Consensus 185 ~------------~~~LYwtd~~~~~I~v~~ldg~~~~-~---l~~~~~~~P~~iavdp~---~g~LYwtd~~~~~~I~~ 245 (395)
. .+.++++-...+.|.+.++...... . .+........+++++|. ..+|+.+. ....|..
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~--~dg~i~i 235 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCII 235 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe--CCCEEEE
Confidence 4 3555566666788999998754322 1 22233556889999998 44454443 2455777
Q ss_pred EecCCCCcc-eEEEEec--CCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 246 GAMNGDPRH-RKVIVDS--TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 246 ~~~dG~~~~-~~~lv~~--~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
.+++..... ...+... +......+++++++..|+.+.. .+.|..-+++
T Consensus 236 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~ 286 (379)
T 3jrp_A 236 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKEN 286 (379)
T ss_dssp EEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEE
T ss_pred EeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCC
Confidence 777652111 2223222 3345677888877777776654 4555544443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.12 Score=48.21 Aligned_cols=184 Identities=10% Similarity=-0.004 Sum_probs=108.1
Q ss_pred EEEEeeCCCC-Ccc-EEecCCCCCeEEEEEEcC--CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRP-LKP-VTIIKDLEEGAAIDYYYK--KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~-~~~-~~~~~~~~~~~gl~~d~~--~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.|++.++... ... ..+......+.+++|.+. ++.|+... .++.|..++++.... ............+..+++.+
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~ 111 (379)
T 3jrp_A 34 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS-YDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAP 111 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE-TTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECC
T ss_pred cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec-cCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCC
Confidence 4666666531 222 233345667889999866 56555444 778899999887510 02222333445688899987
Q ss_pred CC-CeEEEEeCCCCeEEEEECCCCc--eEEEEecCCCCceeEEEeCC-------------CCeEEEEeeCCCCeEEEEec
Q psy13629 185 LT-EKLYWTDSETNKLEVSSLDGKK--RKVLYWEDIDQPRAIALVPQ-------------DSIMFWTDWGEVPKIERGAM 248 (395)
Q Consensus 185 ~~-~~LYwtd~~~~~I~v~~ldg~~--~~~l~~~~~~~P~~iavdp~-------------~g~LYwtd~~~~~~I~~~~~ 248 (395)
.. +.+.++-...+.|.+.++.... ....+.........++++|. ..+|+... ....|...++
T Consensus 112 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~ 189 (379)
T 3jrp_A 112 HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG--ADNLVKIWKY 189 (379)
T ss_dssp GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE--TTSCEEEEEE
T ss_pred CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe--CCCeEEEEEe
Confidence 62 4444555567899999998763 23333355667889999994 44444443 2456777776
Q ss_pred CCCCcceEE--EEecCCcCceeEEEeccc--cEEEEeccceeeeeeeccccc
Q psy13629 249 NGDPRHRKV--IVDSTIFWPNGIAIDFNN--RLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 249 dG~~~~~~~--lv~~~~~~P~glalD~~~--~rLYwaD~~~~~I~~~~~dG~ 296 (395)
......... .+..+......+++++.+ +++..+-...+.|...+++..
T Consensus 190 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 190 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred cCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 542111111 222344567788898773 444444445566766666543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.071 Score=49.31 Aligned_cols=178 Identities=12% Similarity=0.019 Sum_probs=103.3
Q ss_pred EEEEeeCCCCC-ccEEecCCC----CCeEEEE----EEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcce
Q psy13629 109 DIRIANLSRPL-KPVTIIKDL----EEGAAID----YYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDG 179 (395)
Q Consensus 109 ~I~~~~l~~~~-~~~~~~~~~----~~~~gl~----~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~g 179 (395)
.|++.++.... ....+.... .....++ |++.++.|+.. ..++.|..++++.. . ..........+..
T Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~---~-~~~~~~~~~~v~~ 214 (357)
T 3i2n_A 140 TVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG-YDNGDIKLFDLRNM---A-LRWETNIKNGVCS 214 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE-ETTSEEEEEETTTT---E-EEEEEECSSCEEE
T ss_pred eEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE-ccCCeEEEEECccC---c-eeeecCCCCceEE
Confidence 67888887633 233333222 2567777 55666655544 47789999999875 2 2222333456788
Q ss_pred EEEec---CCCeEEEEeCCCCeEEEEECCCCceEEEE-----ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCC
Q psy13629 180 LAIDW---LTEKLYWTDSETNKLEVSSLDGKKRKVLY-----WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGD 251 (395)
Q Consensus 180 lAVD~---~~~~LYwtd~~~~~I~v~~ldg~~~~~l~-----~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~ 251 (395)
+++++ .++.|+ +-...+.|.+.++........+ .........++++|....++++- +....|...+++..
T Consensus 215 ~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 215 LEFDRKDISMNKLV-ATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA-GGAGGLHLWKYEYP 292 (357)
T ss_dssp EEESCSSSSCCEEE-EEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE-ETTSEEEEEEEECC
T ss_pred EEcCCCCCCCCEEE-EECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE-eCCCcEEEeecCCC
Confidence 88887 455554 4456788999887654322111 14456788999999776455554 33456666666531
Q ss_pred Ccc-----------------eEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 252 PRH-----------------RKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 252 ~~~-----------------~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
... .......+......+++++.+..|.++-..++.|..-++
T Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 293 IQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp SCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred cccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 011 111122344456778888777777655444555554443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.026 Score=53.40 Aligned_cols=167 Identities=7% Similarity=-0.037 Sum_probs=106.9
Q ss_pred EecCCCCCeEEEEEEc-CCCEEEEEECCCCeEEEEEccCCCCCceEEEE----------eCCCCCcceEEEecCCCeEEE
Q psy13629 123 TIIKDLEEGAAIDYYY-KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI----------TNGLITPDGLAIDWLTEKLYW 191 (395)
Q Consensus 123 ~~~~~~~~~~gl~~d~-~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~----------~~~~~~p~glAVD~~~~~LYw 191 (395)
........+.+++|++ .++.|+ +...++.|..++++........... ......+..+++.+.++.+++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYML-SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEE-EEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeccCCcEEEEEEecCCCCEEE-EEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 3344567789999999 666555 4447889999999865321111100 013356788888875666666
Q ss_pred EeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCC---eEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 192 TDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDS---IMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 192 td~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g---~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
+-...+.|.+.+++.......+ ........+++.+... .++... ....|...++.. ......+..+-.....
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~d~~~--~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVGT--RGPKVQLCDLKS--GSCSHILQGHRQEILA 191 (408)
T ss_dssp EEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECSSCSSCCEEEEEE--SSSSEEEEESSS--SCCCEEECCCCSCEEE
T ss_pred EEeCCCeEEEeeCCCCccceec-cCCCceeeeEeecCCCCCcEEEEEc--CCCeEEEEeCCC--cceeeeecCCCCcEEE
Confidence 7667889999999987776665 3455677888888643 454443 245678888765 2222333344456778
Q ss_pred EEEeccccEEEEeccceeeeeeecccc
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
+++.+.+.+++.+-...+.|...++..
T Consensus 192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 192 VSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred EEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 888877776665555556666666543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.016 Score=60.24 Aligned_cols=171 Identities=8% Similarity=0.117 Sum_probs=100.3
Q ss_pred EEEEeeCCCCCccEEecCC------CCCeEEEEEEcCCCEEE-EEECC--CCeEEEEEccCCCCCceEEEEeC---CCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKD------LEEGAAIDYYYKKSMVC-WTDHG--TEMISCCTFDGNNVGSKHNVITN---GLIT 176 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~------~~~~~gl~~d~~~~~ly-wsd~~--~~~I~~~~~dg~~~~~~~~i~~~---~~~~ 176 (395)
.|.++++.+......+... ......++|+++++.|+ +++.. ...|+.+++++. ....+... ....
T Consensus 229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~ 305 (723)
T 1xfd_A 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG---VCTKKHEDESEAWLH 305 (723)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC---CEEEEEEEECSSCCC
T ss_pred EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC---cceEEEEeccCCEEe
Confidence 6777888763322333222 33567799999988774 44432 246888888765 22333221 1111
Q ss_pred --cceEEEecCCCeEEEE-eCCCC------eEEEEE-CCCCc---eEEEEecCCCCceeEEEeCCCCeEEEEeeC---CC
Q psy13629 177 --PDGLAIDWLTEKLYWT-DSETN------KLEVSS-LDGKK---RKVLYWEDIDQPRAIALVPQDSIMFWTDWG---EV 240 (395)
Q Consensus 177 --p~glAVD~~~~~LYwt-d~~~~------~I~v~~-ldg~~---~~~l~~~~~~~P~~iavdp~~g~LYwtd~~---~~ 240 (395)
+..+++.+.++.|+++ ....+ +|.+.+ .++.. .+.+..........++++|+++.||++... ..
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 385 (723)
T 1xfd_A 306 RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRR 385 (723)
T ss_dssp CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTC
T ss_pred ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcc
Confidence 2478888888888886 43333 688888 56655 444432222222336899999999887533 35
Q ss_pred CeEEEEecCCCCcceEEEEec--CCcCceeEEEeccccEEEEecc
Q psy13629 241 PKIERGAMNGDPRHRKVIVDS--TIFWPNGIAIDFNNRLLYWIDG 283 (395)
Q Consensus 241 ~~I~~~~~dG~~~~~~~lv~~--~~~~P~glalD~~~~rLYwaD~ 283 (395)
.+|++++.+|. ...+.+... +......+++++++++|.+...
T Consensus 386 ~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 386 RQLYSANTVGN-FNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp CEEEEECSSTT-CCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred eEEEEEeCCCC-CCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 67888888872 122222211 2234567888888877776543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.11 Score=54.12 Aligned_cols=161 Identities=9% Similarity=0.030 Sum_probs=101.1
Q ss_pred CeEEEEEEcCCCEEEEEECCC--C--eEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCC----------
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGT--E--MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE---------- 195 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~--~--~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~---------- 195 (395)
...+++|++++++|.++-... . .|+..++++.. ......... ...+++..+.++.||++...
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~---~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK---ELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE---EEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC---CCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccc
Confidence 367889999999887764322 2 89999998762 222222221 25678888878889888643
Q ss_pred -----CCeEEEEECCCCceE-EEEecCC---CCceeEEEeCCCCeEEEEeeCC---CCeEEEEecCC------CCcceEE
Q psy13629 196 -----TNKLEVSSLDGKKRK-VLYWEDI---DQPRAIALVPQDSIMFWTDWGE---VPKIERGAMNG------DPRHRKV 257 (395)
Q Consensus 196 -----~~~I~v~~ldg~~~~-~l~~~~~---~~P~~iavdp~~g~LYwtd~~~---~~~I~~~~~dG------~~~~~~~ 257 (395)
..+|++.++.+.... .++.+.. ....+++++|++++|+++.+.. ...|+..++++ .....+.
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 235999999775532 3332332 2356899999999999887532 56899999874 1112334
Q ss_pred EEecCCcCceeEEEeccccEEEEeccc---eeeeeeeccccc
Q psy13629 258 IVDSTIFWPNGIAIDFNNRLLYWIDGR---LTFIEVMDYDGY 296 (395)
Q Consensus 258 lv~~~~~~P~glalD~~~~rLYwaD~~---~~~I~~~~~dG~ 296 (395)
+....- ...-.++.++++||+.... ..+|..+++++.
T Consensus 282 l~~~~~--~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 282 LIDNFE--GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp EECSSS--SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred eeCCCC--cEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 433221 1222456668888877432 346888887654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.29 Score=46.57 Aligned_cols=177 Identities=10% Similarity=-0.008 Sum_probs=105.5
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC---C------------
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN---G------------ 173 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~---~------------ 173 (395)
.|++.++........+......+.+++|++.++.|+... .++.|..+++... .....+.. .
T Consensus 162 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~ 237 (420)
T 3vl1_A 162 QLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS-LDGTIRLWECGTG---TTIHTFNRKENPHDGVNSIALFVG 237 (420)
T ss_dssp EEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTT---EEEEEECBTTBTTCCEEEEEEEEC
T ss_pred eEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEc-CCCcEEEeECCCC---ceeEEeecCCCCCCCccEEEEecC
Confidence 688888876445555566677899999999888777554 7788999988754 22222211 1
Q ss_pred ---------CCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEec-CCCCceeEEEeCCCC-eEEEEeeCCCCe
Q psy13629 174 ---------LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-DIDQPRAIALVPQDS-IMFWTDWGEVPK 242 (395)
Q Consensus 174 ---------~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~-~~~~P~~iavdp~~g-~LYwtd~~~~~~ 242 (395)
......+++++. +++.++-...+.|.+.++........+.. .......++++|... +|+... ....
T Consensus 238 ~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~dg~ 314 (420)
T 3vl1_A 238 TDRQLHEISTSKKNNLEFGTY-GKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY--ENGM 314 (420)
T ss_dssp CCSSCGGGCCCCCCTTCSSCT-TEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE--TTSE
T ss_pred CcceeeecccCcccceEEcCC-CCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe--CCCe
Confidence 122334445553 44445555678899999987665544433 345688999999887 555443 3567
Q ss_pred EEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 243 IERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 243 I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
|...++.........+...+-.....+... .++++++-..++.|..-++.
T Consensus 315 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 315 LAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp EEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEEC
T ss_pred EEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEecc
Confidence 888888752121233333222233444433 33444444445555554443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.041 Score=53.60 Aligned_cols=179 Identities=15% Similarity=0.043 Sum_probs=108.5
Q ss_pred EEEEeeCCCCCccEEe--cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC--CCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVTI--IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG--LITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~--~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~--~~~p~glAVD~ 184 (395)
.|++.++......... ......+.+|+|++.++.++.+...+++|...++++. ....+.... ......+++++
T Consensus 143 ~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~ 219 (435)
T 4e54_B 143 DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN---ILRVFASSDTINIWFCSLDVSA 219 (435)
T ss_dssp CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC---EEEEEECCSSCSCCCCCEEEET
T ss_pred EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC---ceeEEeccCCCCccEEEEEECC
Confidence 6888888763333222 2345678999999865556667778899999999875 233333322 23356788887
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEE-ecCC
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIV-DSTI 263 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv-~~~~ 263 (395)
.+. +.++-...+.|.+.+++++....+. .......+++++|....++.+-.. ...|...++........... ..+.
T Consensus 220 ~~~-~l~~g~~dg~i~~wd~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~-d~~v~iwd~~~~~~~~~~~~~~~h~ 296 (435)
T 4e54_B 220 SSR-MVVTGDNVGNVILLNMDGKELWNLR-MHKKKVTHVALNPCCDWFLATASV-DQTVKIWDLRQVRGKASFLYSLPHR 296 (435)
T ss_dssp TTT-EEEEECSSSBEEEEESSSCBCCCSB-CCSSCEEEEEECTTCSSEEEEEET-TSBCCEEETTTCCSSSCCSBCCBCS
T ss_pred CCC-EEEEEeCCCcEeeeccCcceeEEEe-cccceEEeeeecCCCceEEEEecC-cceeeEEecccccccceEEEeeecc
Confidence 554 4456667889999999887554432 334567899999988877766522 34455555543111111111 1233
Q ss_pred cCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
...+.+++++++..|..+. .++.|..-+..
T Consensus 297 ~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~ 326 (435)
T 4e54_B 297 HPVNAACFSPDGARLLTTD-QKSEIRVYSAS 326 (435)
T ss_dssp SCEEECCBCTTSSEEEEEE-SSSCEEEEESS
T ss_pred ccccceeECCCCCeeEEEc-CCCEEEEEECC
Confidence 3456677776666665543 34555555543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.24 Score=44.62 Aligned_cols=171 Identities=8% Similarity=-0.029 Sum_probs=106.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEc-CCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-CCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYY-KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-GLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~-~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-~~~~p~glAVD~~~ 186 (395)
.|++.+ .+ ............+..+++.+ .++.++ +...++.|..++... ....... ....+..+++.+.+
T Consensus 125 ~i~~~d-~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~-----~~~~~~~~~~~~i~~~~~~~~~ 196 (313)
T 3odt_A 125 TAKVWK-EG-SLVYNLQAHNASVWDAKVVSFSENKFL-TASADKTIKLWQNDK-----VIKTFSGIHNDVVRHLAVVDDG 196 (313)
T ss_dssp EEEEEE-TT-EEEEEEECCSSCEEEEEEEETTTTEEE-EEETTSCEEEEETTE-----EEEEECSSCSSCEEEEEEEETT
T ss_pred CEEEEc-CC-cEEEecccCCCceeEEEEccCCCCEEE-EEECCCCEEEEecCc-----eEEEEeccCcccEEEEEEcCCC
Confidence 566666 22 33444455667788999988 555554 444778888887332 2222322 45667889988744
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
. +++-...+.|.+.++........+........+++++|.+ +|+... ....|...++.. ......+..+....
T Consensus 197 -~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~--~dg~v~iwd~~~--~~~~~~~~~~~~~i 269 (313)
T 3odt_A 197 -H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG--EDRTVRIWSKEN--GSLKQVITLPAISI 269 (313)
T ss_dssp -E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE--TTSEEEEECTTT--CCEEEEEECSSSCE
T ss_pred -e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe--cCCEEEEEECCC--CceeEEEeccCceE
Confidence 4 4566677899999998666655554556778999999976 554333 357788888865 33333334444456
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
..+++.+.+. +. +-...+.|..-+++..
T Consensus 270 ~~~~~~~~~~-~~-~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 270 WSVDCMSNGD-II-VGSSDNLVRIFSQEKS 297 (313)
T ss_dssp EEEEECTTSC-EE-EEETTSCEEEEESCGG
T ss_pred EEEEEccCCC-EE-EEeCCCcEEEEeCCCC
Confidence 7788876554 33 3334556655555443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.11 Score=47.79 Aligned_cols=170 Identities=11% Similarity=0.067 Sum_probs=101.6
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+..++.++ ..............++..+.. +.||+.. ..+.|++++.+|. ..............+++|. .++
T Consensus 118 ~l~~~d~~g-~~~~~~~~~~~~~~~~~~~~~-g~l~vgt-~~~~l~~~d~~g~----~~~~~~~~~~~~~~~~~d~-~g~ 189 (330)
T 3hxj_A 118 HLYAINTDG-TEKWRFKTKKAIYATPIVSED-GTIYVGS-NDNYLYAINPDGT----EKWRFKTNDAITSAASIGK-DGT 189 (330)
T ss_dssp EEEEECTTS-CEEEEEECSSCCCSCCEECTT-SCEEEEC-TTSEEEEECTTSC----EEEEEECSSCCCSCCEECT-TCC
T ss_pred EEEEEcCCC-CEEEEEcCCCceeeeeEEcCC-CEEEEEc-CCCEEEEECCCCC----EeEEEecCCCceeeeEEcC-CCE
Confidence 456666653 222222222233445566654 4466554 5678999888853 2222223334567788885 678
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
||++. +.|.+++.+|....... .......++++++ +|.||++.. ...|.+.+.+| ... .-.......+..
T Consensus 190 l~v~t---~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~-~g~l~v~t~--~~gl~~~~~~g--~~~-~~~~~~~~~~~~ 259 (330)
T 3hxj_A 190 IYFGS---DKVYAINPDGTEKWNFY-AGYWTVTRPAISE-DGTIYVTSL--DGHLYAINPDG--TEK-WRFKTGKRIESS 259 (330)
T ss_dssp EEEES---SSEEEECTTSCEEEEEC-CSSCCCSCCEECT-TSCEEEEET--TTEEEEECTTS--CEE-EEEECSSCCCSC
T ss_pred EEEEe---CEEEEECCCCcEEEEEc-cCCcceeceEECC-CCeEEEEcC--CCeEEEECCCC--CEe-EEeeCCCCcccc
Confidence 88887 78999996665543332 3345678899986 568888763 35688887766 322 222333334556
Q ss_pred EEEeccccEEEEeccceeeeeeecccccee
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
+.+| .+++||++... +.|.+++.+|...
T Consensus 260 ~~~~-~~g~l~v~t~~-ggl~~~d~~g~~~ 287 (330)
T 3hxj_A 260 PVIG-NTDTIYFGSYD-GHLYAINPDGTEK 287 (330)
T ss_dssp CEEC-TTSCEEEECTT-CEEEEECTTSCEE
T ss_pred ceEc-CCCeEEEecCC-CCEEEECCCCcEE
Confidence 7777 56788888753 4677777765543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.072 Score=50.19 Aligned_cols=164 Identities=8% Similarity=-0.005 Sum_probs=103.8
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC--eEEEEeCCCCeEEEEEC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE--KLYWTDSETNKLEVSSL 204 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~--~LYwtd~~~~~I~v~~l 204 (395)
....+.+++|.+.++.++++...++.|..++++.. ...... ........+++.+... .+.++-...+.|.+.++
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 173 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL---QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL 173 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT---EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred CCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC---ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence 56678999999955556666667899999999875 222222 2334566777766533 35555566789999999
Q ss_pred CCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEE--------------ecCCcCceeEE
Q psy13629 205 DGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIV--------------DSTIFWPNGIA 270 (395)
Q Consensus 205 dg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv--------------~~~~~~P~gla 270 (395)
........+........+++++|...+++++- +....|...++.........+- ..+......++
T Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 174 KSGSCSHILQGHRQEILAVSWSPRYDYILATA-SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp SSSCCCEEECCCCSCEEEEEECSSCTTEEEEE-ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred CCcceeeeecCCCCcEEEEEECCCCCcEEEEE-cCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 87665555544556788999999888766554 3345677777754211111110 12334577888
Q ss_pred EeccccEEEEeccceeeeeeeccccc
Q psy13629 271 IDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 271 lD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
+++.+..|+.+. ..+.|...++...
T Consensus 253 ~~~~~~~l~~~~-~dg~i~vwd~~~~ 277 (408)
T 4a11_B 253 FTSDGLHLLTVG-TDNRMRLWNSSNG 277 (408)
T ss_dssp ECTTSSEEEEEE-TTSCEEEEETTTC
T ss_pred EcCCCCEEEEec-CCCeEEEEECCCC
Confidence 887766666654 3456666665543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.28 Score=44.20 Aligned_cols=177 Identities=8% Similarity=-0.023 Sum_probs=105.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++...............+.+++|++.++.|+... .++.|..+++.....................++.+ ++.
T Consensus 40 ~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~ 116 (313)
T 3odt_A 40 TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGG-KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGV 116 (313)
T ss_dssp EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TTE
T ss_pred cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEec-CCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--CCE
Confidence 577778766333444555677889999999888777665 67888888876542111122233333455666664 444
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeC-CCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP-QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp-~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
| ++-...+.|.+.+ .+..... +.........+++.| ....|+.+. ....|...+.. .....+...+.....
T Consensus 117 l-~~~~~d~~i~~~d-~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~d~~---~~~~~~~~~~~~~i~ 188 (313)
T 3odt_A 117 V-ISGSWDKTAKVWK-EGSLVYN-LQAHNASVWDAKVVSFSENKFLTAS--ADKTIKLWQND---KVIKTFSGIHNDVVR 188 (313)
T ss_dssp E-EEEETTSEEEEEE-TTEEEEE-EECCSSCEEEEEEEETTTTEEEEEE--TTSCEEEEETT---EEEEEECSSCSSCEE
T ss_pred E-EEEeCCCCEEEEc-CCcEEEe-cccCCCceeEEEEccCCCCEEEEEE--CCCCEEEEecC---ceEEEEeccCcccEE
Confidence 4 4555678899998 3333333 334566778888888 455554443 24556666622 233333332455677
Q ss_pred eEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
.+++...+. +++-...+.|...+++....
T Consensus 189 ~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 189 HLAVVDDGH--FISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp EEEEEETTE--EEEEETTSEEEEEETTTCCE
T ss_pred EEEEcCCCe--EEEccCCCeEEEEECCchhh
Confidence 788875544 44444566777777654333
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.066 Score=49.79 Aligned_cols=135 Identities=8% Similarity=-0.007 Sum_probs=87.0
Q ss_pred CCeEEEEEEcCCCEEEEEEC--------CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeC----CC
Q psy13629 129 EEGAAIDYYYKKSMVCWTDH--------GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS----ET 196 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~--------~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~----~~ 196 (395)
..+.+.++ ++++|+|+-. ....|+.+++++. ....+ .....+++.+.++.|+++.. ..
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~---~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN---ARRFI-----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC---CEEEE-----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC---ceEEc-----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 33455556 5666766521 1456888888875 22333 45677899988888888763 23
Q ss_pred CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-------------------------CCCeEEEEecCCC
Q psy13629 197 NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-------------------------EVPKIERGAMNGD 251 (395)
Q Consensus 197 ~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-------------------------~~~~I~~~~~dG~ 251 (395)
..|.+.++++...+.+..... ..+++.+|+++.|+++... ....|++.++++
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~- 161 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES- 161 (347)
T ss_dssp EEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT-
T ss_pred ceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC-
Confidence 469999999877666653332 8899999999888887521 135788899876
Q ss_pred Ccce-EEEEecCCcCceeEEEeccccEEEEe
Q psy13629 252 PRHR-KVIVDSTIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 252 ~~~~-~~lv~~~~~~P~glalD~~~~rLYwa 281 (395)
... +.+.. . ....+++.+++ .+|.+
T Consensus 162 -~~~~~~l~~-~--~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 162 -EEVIEEFEK-P--RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp -TEEEEEEEE-E--TTCEEEEETTE-EEEEE
T ss_pred -CeEEeeecC-C--CcccccCCCCe-EEEEE
Confidence 333 34433 2 45667777555 44444
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.21 Score=46.85 Aligned_cols=167 Identities=7% Similarity=-0.060 Sum_probs=101.1
Q ss_pred EEEEeeCCCCCcc--EEe-cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 109 DIRIANLSRPLKP--VTI-IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~~~~--~~~-~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.|++.++.+.... ... ......+.+++|++.++.|.-.. .++.|...+.+.... .....+........++++.+.
T Consensus 39 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s-~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~ 116 (345)
T 3fm0_A 39 RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS-FDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPS 116 (345)
T ss_dssp CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTT
T ss_pred eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE-CCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCC
Confidence 5777777652211 112 33556789999999888766554 677888888765421 111222333456788999885
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceE---EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceE--EEEe
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRK---VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRK--VIVD 260 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~---~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~--~lv~ 260 (395)
++. ..+-...+.|.+.+++..... ..+.........++++|...+|..... ...|...+... .... ..+.
T Consensus 117 ~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~~w~~~~--~~~~~~~~~~ 191 (345)
T 3fm0_A 117 GNL-LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY--DDTVKLYREEE--DDWVCCATLE 191 (345)
T ss_dssp SSE-EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET--TSCEEEEEEET--TEEEEEEEEC
T ss_pred CCE-EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC--CCcEEEEEecC--CCEEEEEEec
Confidence 544 456566788999998765332 223234556789999998777765543 34455555544 2211 2233
Q ss_pred cCCcCceeEEEeccccEEEEec
Q psy13629 261 STIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 261 ~~~~~P~glalD~~~~rLYwaD 282 (395)
.+......++++++++.|..+.
T Consensus 192 ~h~~~v~~l~~sp~g~~l~s~s 213 (345)
T 3fm0_A 192 GHESTVWSLAFDPSGQRLASCS 213 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEe
Confidence 3455678889987776665443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.27 Score=45.38 Aligned_cols=161 Identities=6% Similarity=-0.024 Sum_probs=103.2
Q ss_pred CCCCeEEEEEEcC----CCEEEEEECCCCeEEEEEccCCCCCceEEEE--eC--CCCCcceEEEecCC---CeEEEEeCC
Q psy13629 127 DLEEGAAIDYYYK----KSMVCWTDHGTEMISCCTFDGNNVGSKHNVI--TN--GLITPDGLAIDWLT---EKLYWTDSE 195 (395)
Q Consensus 127 ~~~~~~gl~~d~~----~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~--~~--~~~~p~glAVD~~~---~~LYwtd~~ 195 (395)
....+.+++|++. ...++.+. ..+.|..++..... ....+. .. .......+++.+.. +.+.++-..
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~-~~~~v~vw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATV-GSNRVTLYECHSQG--EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEE-ETTEEEEEEECGGG--CEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred CCCceEEEEEecccCCCCceEEEEC-CCCEEEEEEcCCCc--EEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4567899999983 45555555 56688888887432 112221 11 22457788888753 456666667
Q ss_pred CCeEEEEECCCCceEEEEecCCCCceeEEEeC-CCCeEEEEeeCCCCeEEEEecCCCCcceEEEE---ecCCcCceeEEE
Q psy13629 196 TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP-QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIV---DSTIFWPNGIAI 271 (395)
Q Consensus 196 ~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp-~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv---~~~~~~P~glal 271 (395)
.+.|.+.++........+........+++++| ...+|+... ....|...++.. ......+ ..+......+++
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS--KDHALRLWNIQT--DTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTT--TEEEEEECSTTSCSSCEEEEEE
T ss_pred CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEe--CCCeEEEEEeec--CeEEEEecccccccCceeEEEE
Confidence 88999999987666555545667889999999 444454433 356688888875 2333333 234557888899
Q ss_pred eccccEEEEeccceeeeeeecccc
Q psy13629 272 DFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 272 D~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
++.++.|+.+. ..+.|...+++.
T Consensus 170 ~~~~~~l~~~~-~dg~i~i~d~~~ 192 (366)
T 3k26_A 170 DLLGEKIMSCG-MDHSLKLWRINS 192 (366)
T ss_dssp CTTSSEEEEEE-TTSCEEEEESCS
T ss_pred CCCCCEEEEec-CCCCEEEEECCC
Confidence 87777666554 346676666654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.2 Score=52.11 Aligned_cols=180 Identities=13% Similarity=-0.004 Sum_probs=105.6
Q ss_pred EEEEEeeCCCCCcc-EEecCCCCCeEEEEEEcCCCEEEEEECC------------CCeEEEEEccCCCCCceEEEEeCCC
Q psy13629 108 LDIRIANLSRPLKP-VTIIKDLEEGAAIDYYYKKSMVCWTDHG------------TEMISCCTFDGNNVGSKHNVITNGL 174 (395)
Q Consensus 108 ~~I~~~~l~~~~~~-~~~~~~~~~~~gl~~d~~~~~lywsd~~------------~~~I~~~~~dg~~~~~~~~i~~~~~ 174 (395)
.+|+++++++.... .......+ ..+++|+++++.||++... ...|++.++.+.. ....++....
T Consensus 147 ~~i~v~dl~tg~~~~~~~~~~~~-~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~--~~~~lv~~~~ 223 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVDVIEGGK-YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP--SKDTVVHERT 223 (695)
T ss_dssp CEEEEEETTTCCBCSSCCBSCCT-TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG--GGCEEEECCC
T ss_pred EEEEEEECCCCCCcCCcccCccc-ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc--hhceEEEecC
Confidence 37888999873322 11122221 2678999999999998742 2349999988652 1123333322
Q ss_pred ---CCcceEEEecCCCeEEEEeCC---CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEE-EeeC-CCCeEEEE
Q psy13629 175 ---ITPDGLAIDWLTEKLYWTDSE---TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFW-TDWG-EVPKIERG 246 (395)
Q Consensus 175 ---~~p~glAVD~~~~~LYwtd~~---~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYw-td~~-~~~~I~~~ 246 (395)
....++++.+.++.|+++... ...|.+.+..+...+.+... .......+. +.++ +|+ +++. ...+|.++
T Consensus 224 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~ 300 (695)
T 2bkl_A 224 GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG-VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEV 300 (695)
T ss_dssp CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC-SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC-CCceEEEEe-cCCc-EEEEECCCCCCCEEEEE
Confidence 234578888888888776532 34788887755555555533 223333333 5566 555 4443 46889999
Q ss_pred ecCCCCcc---eEEEEecC-CcCceeEEEeccccEEEEecc--ceeeeeeeccccce
Q psy13629 247 AMNGDPRH---RKVIVDST-IFWPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYV 297 (395)
Q Consensus 247 ~~dG~~~~---~~~lv~~~-~~~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~ 297 (395)
++++ .. -+.++... -....+++++ +++|+++-. ...+|..++++|..
T Consensus 301 d~~~--~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~ 353 (695)
T 2bkl_A 301 DPAK--PARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKP 353 (695)
T ss_dssp BTTB--CSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCE
T ss_pred eCCC--CCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCe
Confidence 9976 23 24555432 2234556665 667776643 34566777776653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.1 Score=48.31 Aligned_cols=137 Identities=7% Similarity=-0.078 Sum_probs=91.8
Q ss_pred EEEEeeCCCCCccEEecC-----CCCCeEEEEEEcCC---CEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceE
Q psy13629 109 DIRIANLSRPLKPVTIIK-----DLEEGAAIDYYYKK---SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGL 180 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~-----~~~~~~gl~~d~~~---~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~gl 180 (395)
.|++.++........+.. ....+.+++|.+.. +.++++...++.|..++++.. .....+......+.++
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~i~~~ 121 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM---QCIKHYVGHGNAINEL 121 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC---CEEEEEESCCSCEEEE
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc---eEeeeecCCCCcEEEE
Confidence 567777664222222211 33668999999884 345566668889999998865 3333444455678899
Q ss_pred EEecCCCeEEEEeCCCCeEEEEECCCCceEEEE---ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 181 AIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY---WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 181 AVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~---~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
++.+.++++.++-...+.|.+.++........+ ......+.+++++|...+|+.+. ....|...++..
T Consensus 122 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~ 192 (366)
T 3k26_A 122 KFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG--MDHSLKLWRINS 192 (366)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE--TTSCEEEEESCS
T ss_pred EECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec--CCCCEEEEECCC
Confidence 998845555566666889999999877665555 24466789999999877776654 245677777654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.16 Score=46.84 Aligned_cols=180 Identities=11% Similarity=-0.025 Sum_probs=107.4
Q ss_pred EEEEeeCCCCC-ccEEecCCCCCeEEEEE------EcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC---CCCcc
Q psy13629 109 DIRIANLSRPL-KPVTIIKDLEEGAAIDY------YYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG---LITPD 178 (395)
Q Consensus 109 ~I~~~~l~~~~-~~~~~~~~~~~~~gl~~------d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~---~~~p~ 178 (395)
.|++.++.... ....+......+.+++| ++.++.|+.. ..++.|..+++..... ....+.... .....
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~-~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTG-SRDGTVKVWDPRQKDD-PVANMEPVQGENKRDCW 168 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEE-ETTSCEEEECTTSCSS-CSEEECCCTTSCCCCEE
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEE-eCCCeEEEEeCCCCCC-cceeccccCCCCCCceE
Confidence 57888887644 44555556677888866 4556665544 4788899998876421 112221111 12445
Q ss_pred eEE----EecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeC---CCCeEEEEeeCCCCeEEEEecCCC
Q psy13629 179 GLA----IDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP---QDSIMFWTDWGEVPKIERGAMNGD 251 (395)
Q Consensus 179 glA----VD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp---~~g~LYwtd~~~~~~I~~~~~dG~ 251 (395)
.++ +++ .+++.++-...+.|.+.++......... ........++++| ..++|+.+. ....|...++...
T Consensus 169 ~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 169 TVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWET-NIKNGVCSLEFDRKDISMNKLVATS--LEGKFHVFDMRTQ 244 (357)
T ss_dssp EEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEESCSSSSCCEEEEEE--STTEEEEEEEEEE
T ss_pred EEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeec-CCCCceEEEEcCCCCCCCCEEEEEC--CCCeEEEEeCcCC
Confidence 555 344 4445555556789999999887765444 4456789999999 667776654 2456766666541
Q ss_pred CcceEE---EEecCCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 252 PRHRKV---IVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 252 ~~~~~~---lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
...... ....+......+++.+.+..++++-...+.|..-+++
T Consensus 245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 245 HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 111111 1123445677888886666466665556666665554
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.12 Score=53.93 Aligned_cols=181 Identities=9% Similarity=0.044 Sum_probs=107.5
Q ss_pred EEEEeeCCCCC-ccEEecCCC----CCeEEEEEEcCCCEEEEEECC---CCeEEEEEccCCCCCceEEEEeCCCCCcceE
Q psy13629 109 DIRIANLSRPL-KPVTIIKDL----EEGAAIDYYYKKSMVCWTDHG---TEMISCCTFDGNNVGSKHNVITNGLITPDGL 180 (395)
Q Consensus 109 ~I~~~~l~~~~-~~~~~~~~~----~~~~gl~~d~~~~~lywsd~~---~~~I~~~~~dg~~~~~~~~i~~~~~~~p~gl 180 (395)
.|.+.++.... ....+.... ....++.++++++.|+++... .+.|+..++++... ....+. .....-...
T Consensus 209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~-~~~~l~-~~~~~~~~~ 286 (693)
T 3iuj_A 209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA-PLLTVQ-GDLDADVSL 286 (693)
T ss_dssp EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-CCEEEE-CSSSSCEEE
T ss_pred EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-ceEEEe-CCCCceEEE
Confidence 46666665422 223343332 236789999999999877542 35899999876421 123333 222222222
Q ss_pred EEecCCCeEEEEeCC---CCeEEEEECCCCce---EEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCc
Q psy13629 181 AIDWLTEKLYWTDSE---TNKLEVSSLDGKKR---KVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPR 253 (395)
Q Consensus 181 AVD~~~~~LYwtd~~---~~~I~v~~ldg~~~---~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~ 253 (395)
+++.++.||+.... +.+|.++++++... +.++.+.... . .+++.+++|+++... ...+|...+++| .
T Consensus 287 -~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g--~ 360 (693)
T 3iuj_A 287 -VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV-L--TVHSGSGYLFAEYMVDATARVEQFDYEG--K 360 (693)
T ss_dssp -EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC-E--EEEEETTEEEEEEEETTEEEEEEECTTS--C
T ss_pred -EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE-E--EEEEECCEEEEEEEECCeeEEEEEECCC--C
Confidence 56668888887533 57899999988654 5666443322 2 677778888887643 346899999998 4
Q ss_pred ceEEEEecCCcCceeEEEeccccEEEEeccc---eeeeeeeccccce
Q psy13629 254 HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGR---LTFIEVMDYDGYV 297 (395)
Q Consensus 254 ~~~~lv~~~~~~P~glalD~~~~rLYwaD~~---~~~I~~~~~dG~~ 297 (395)
..+.+.......-.++..+.++++|+++-.. -..|...++++..
T Consensus 361 ~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4444332222233344555566777766322 2667788876543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.065 Score=49.42 Aligned_cols=174 Identities=7% Similarity=-0.050 Sum_probs=107.6
Q ss_pred EEEEeeCCCCC---ccEEecCCCCCeEEEEEEcCCC-EEEEEECCCCeEEEEEc-cCCCCCceEEEEeC--CCCCcceEE
Q psy13629 109 DIRIANLSRPL---KPVTIIKDLEEGAAIDYYYKKS-MVCWTDHGTEMISCCTF-DGNNVGSKHNVITN--GLITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~---~~~~~~~~~~~~~gl~~d~~~~-~lywsd~~~~~I~~~~~-dg~~~~~~~~i~~~--~~~~p~glA 181 (395)
.|++.++.... ...........+.+++|++.++ .|+... .++.|..+++ ++. . ...+.. ....+..++
T Consensus 34 ~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~---~-~~~~~~~~~~~~v~~l~ 108 (342)
T 1yfq_A 34 SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT-VQGEILKVDLIGSP---S-FQALTNNEANLGICRIC 108 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE-TTSCEEEECSSSSS---S-EEECBSCCCCSCEEEEE
T ss_pred eEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc-CCCeEEEEEeccCC---c-eEeccccCCCCceEEEE
Confidence 57777776533 1344455667889999999888 676665 7789999998 764 2 233333 445678899
Q ss_pred EecCCCeEEEEeCCCCeEEEEECCC---------CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC-C
Q psy13629 182 IDWLTEKLYWTDSETNKLEVSSLDG---------KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG-D 251 (395)
Q Consensus 182 VD~~~~~LYwtd~~~~~I~v~~ldg---------~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG-~ 251 (395)
+.+ ++.| ++-...+.|.+.++.. ......+ .....+.+++++|.. |+.+. ....|...++.. .
T Consensus 109 ~~~-~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~--l~~~~--~d~~i~i~d~~~~~ 181 (342)
T 1yfq_A 109 KYG-DDKL-IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-KVKNKIFTMDTNSSR--LIVGM--NNSQVQWFRLPLCE 181 (342)
T ss_dssp EET-TTEE-EEEETTSEEEEECHHHHTTBCEEEEESCSSSS-SSCCCEEEEEECSSE--EEEEE--STTEEEEEESSCCT
T ss_pred eCC-CCEE-EEEcCCCeEEEEcccccccccccccCCeeeEE-eeCCceEEEEecCCc--EEEEe--CCCeEEEEECCccc
Confidence 998 5555 4555678899998764 2211111 234567888998754 55443 245788888765 2
Q ss_pred CcceEEEEecCCcCceeEEEec-cccEEEEeccceeeeeeecccc
Q psy13629 252 PRHRKVIVDSTIFWPNGIAIDF-NNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 252 ~~~~~~lv~~~~~~P~glalD~-~~~rLYwaD~~~~~I~~~~~dG 295 (395)
...........-..+..+++.+ .++.|+.+. ..+.|...+++.
T Consensus 182 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~i~i~~~~~ 225 (342)
T 1yfq_A 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSS-IDGRVAVEFFDD 225 (342)
T ss_dssp TCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-TTSEEEEEECCT
T ss_pred cccceeeecCCCCceeEEEECCCCCCEEEEEe-cCCcEEEEEEcC
Confidence 1222333333444678888886 555555444 456666544443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.34 Score=45.12 Aligned_cols=161 Identities=9% Similarity=-0.002 Sum_probs=99.6
Q ss_pred CCCCCeEEEEEEc--CCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCCCeEEEEeCCCCeEEEE
Q psy13629 126 KDLEEGAAIDYYY--KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVS 202 (395)
Q Consensus 126 ~~~~~~~gl~~d~--~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~ 202 (395)
.....+.++++++ .++.+. +...++.|..++++.. ....+.. ........+++++ .+.+..+-...+.|.+.
T Consensus 123 ~~~~~v~~~~~~~~~~~~~l~-s~s~dg~i~~wd~~~~---~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNTEYFI-WADNRGTIGFQSYEDD---SQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVY 197 (343)
T ss_dssp CCSSCEEEEECCC---CCEEE-EEETTCCEEEEESSSS---CEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEE
T ss_pred CCCCCEEEEEcCCCCCCCEEE-EEeCCCcEEEEECCCC---cEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEE
Confidence 3345689999998 666554 4447889999999865 2222222 2233578999998 45566666678999999
Q ss_pred ECCCCceE-EEEec-CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe--cCCcCc--eeEEEecccc
Q psy13629 203 SLDGKKRK-VLYWE-DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD--STIFWP--NGIAIDFNNR 276 (395)
Q Consensus 203 ~ldg~~~~-~l~~~-~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~--~~~~~P--~glalD~~~~ 276 (395)
++...... ..+.. .......++++|...+|..+. . . .|...++... .....+-. .+.... ..+++++.++
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~-~-~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D-Q-TVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S-S-BEEEEETTSS-TTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C-C-eEEEEEcCCC-CcceeecccccccccccceEEEECCCCC
Confidence 99876654 33323 356789999999877777665 3 2 7888888652 11111110 010111 3488998888
Q ss_pred EEEEeccceeeeeeecccc
Q psy13629 277 LLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 277 rLYwaD~~~~~I~~~~~dG 295 (395)
.|..+....+.|...+++.
T Consensus 274 ~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 274 NMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp EEEEEETTTTEEEEEEECT
T ss_pred EEEEecCCCCcEEEEEEcc
Confidence 7777444345565555543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.23 Score=51.79 Aligned_cols=184 Identities=11% Similarity=0.108 Sum_probs=108.5
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC------------CCeEEEEEccCCCCCceEEEEeCCCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG------------TEMISCCTFDGNNVGSKHNVITNGLI 175 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~------------~~~I~~~~~dg~~~~~~~~i~~~~~~ 175 (395)
.+|+++++.+........+.. ...+++|. +++.||++... ...|++..+.... ....++.....
T Consensus 155 ~~i~v~dl~tg~~~~~~~~~~-k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~--~~~~~v~~~~~ 230 (693)
T 3iuj_A 155 REIHLMDVESKQPLETPLKDV-KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQ--EDDRLVFGAIP 230 (693)
T ss_dssp EEEEEEETTTCSEEEEEEEEE-ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCG--GGCEEEESCSG
T ss_pred EEEEEEECCCCCCCccccCCc-eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCc--ccceEEEecCC
Confidence 478899998743222222211 12467888 88888888543 2468888876542 11233333222
Q ss_pred ----CcceEEEecCCCeEEEEeC---CCCeEEEEECCCC--ceEEEEecCCCCceeEEEeCCCCeEEEEeeC--CCCeEE
Q psy13629 176 ----TPDGLAIDWLTEKLYWTDS---ETNKLEVSSLDGK--KRKVLYWEDIDQPRAIALVPQDSIMFWTDWG--EVPKIE 244 (395)
Q Consensus 176 ----~p~glAVD~~~~~LYwtd~---~~~~I~v~~ldg~--~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~--~~~~I~ 244 (395)
.-.++++.+.++.|+++.. ..+.|++.++++. ..+.+. .....-... +++.++.||+.... ...+|.
T Consensus 231 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~ 308 (693)
T 3iuj_A 231 AQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ-GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLV 308 (693)
T ss_dssp GGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-CSSSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred CCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-CCCCceEEE-EeccCCEEEEEECCCCCCCEEE
Confidence 2347788888888877653 2358999998765 334444 332222222 66778888877543 257899
Q ss_pred EEecCCCCc-ceEEEEecCCcCceeEEEeccccEEEEecc--ceeeeeeeccccceeee
Q psy13629 245 RGAMNGDPR-HRKVIVDSTIFWPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 245 ~~~~dG~~~-~~~~lv~~~~~~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~~ 300 (395)
++++++... +-+.++...-.. +.++.+++.|+++-. ...+|...+++|.....
T Consensus 309 ~~d~~~~~~~~~~~l~~~~~~~---~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~ 364 (693)
T 3iuj_A 309 TVDAANPGPAHWRDLIPERQQV---LTVHSGSGYLFAEYMVDATARVEQFDYEGKRVRE 364 (693)
T ss_dssp EEETTSCCGGGCEEEECCCSSC---EEEEEETTEEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EEeCCCCCccccEEEecCCCCE---EEEEEECCEEEEEEEECCeeEEEEEECCCCeeEE
Confidence 999987311 114555443222 255555788877643 34578888888765443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.37 Score=46.63 Aligned_cols=161 Identities=6% Similarity=-0.018 Sum_probs=100.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.+++|++.++.|+... .++.|..++++.. .....+......+..++++ . .
T Consensus 291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~-~ 363 (464)
T 3v7d_B 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENG---ELMYTLQGHTALVGLLRLS--D-K 363 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTT---EEEEEECCCSSCEEEEEEC--S-S
T ss_pred eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCC---cEEEEEeCCCCcEEEEEEc--C-C
Confidence 677888766333334444567789999999888776554 7889999998764 2233333344556667765 3 4
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
..++-...+.|.+.++....+.... ........+++++.+.+|.... ...|...++... .........+......
T Consensus 364 ~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~---dg~i~iwd~~~g-~~~~~~~~~~~~~v~~ 438 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS---ENQFNIYNLRSG-KLVHANILKDADQIWS 438 (464)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE---TTEEEEEETTTC-CEEESCTTTTCSEEEE
T ss_pred EEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec---CCeEEEEECCCC-cEEehhhccCCCcEEE
Confidence 4456566789999999876655444 3445566788888777666544 467888887641 1111112223334555
Q ss_pred EEEeccccEEEEecc
Q psy13629 269 IAIDFNNRLLYWIDG 283 (395)
Q Consensus 269 lalD~~~~rLYwaD~ 283 (395)
++++ ++++..+-.
T Consensus 439 v~~~--~~~l~~~~~ 451 (464)
T 3v7d_B 439 VNFK--GKTLVAAVE 451 (464)
T ss_dssp EEEE--TTEEEEEEE
T ss_pred EEec--CCEEEEEEE
Confidence 5665 666666643
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.53 Score=43.84 Aligned_cols=180 Identities=8% Similarity=-0.062 Sum_probs=112.9
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCC-ceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG-SKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~-~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.|++.++........+......+.+++|++.++.|.... .++.|..+++...... ...............++... .+
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~ 155 (340)
T 1got_B 78 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG-LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DN 155 (340)
T ss_dssp EEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEE-TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TT
T ss_pred cEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-CC
Confidence 678888766344444445566788999999888776554 6788998888753211 11222233334556666654 34
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
.| .+-...+.|.+.++........+.........++++|...+|+ +- +....|...++.. ......+..+....+
T Consensus 156 ~l-~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sg-~~d~~v~~wd~~~--~~~~~~~~~h~~~v~ 230 (340)
T 1got_B 156 QI-VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV-SG-ACDASAKLWDVRE--GMCRQTFTGHESDIN 230 (340)
T ss_dssp EE-EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EE-ETTSCEEEEETTT--CSEEEEECCCSSCEE
T ss_pred cE-EEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE-EE-eCCCcEEEEECCC--CeeEEEEcCCcCCEE
Confidence 44 4555678899999987766555544456788999999665554 43 2345677777765 233333344455678
Q ss_pred eEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
.+++.+.++.|..+ ..++.|..-++...
T Consensus 231 ~v~~~p~~~~l~s~-s~d~~v~iwd~~~~ 258 (340)
T 1got_B 231 AICFFPNGNAFATG-SDDATCRLFDLRAD 258 (340)
T ss_dssp EEEECTTSSEEEEE-ETTSCEEEEETTTT
T ss_pred EEEEcCCCCEEEEE-cCCCcEEEEECCCC
Confidence 89998766655444 44566766666543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.52 Score=43.52 Aligned_cols=165 Identities=9% Similarity=-0.000 Sum_probs=106.4
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEEC
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 204 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~l 204 (395)
......+..++|.+.++.|+-. ..++.|...++... .....+.........+++++.+. +..+-...+.|.+.++
T Consensus 62 ~~h~~~v~~~~~s~dg~~l~s~-s~D~~v~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~ 136 (319)
T 3frx_A 62 KGHSHIVQDCTLTADGAYALSA-SWDKTLRLWDVATG---ETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI 136 (319)
T ss_dssp ECCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEET
T ss_pred eCCcccEEEEEECCCCCEEEEE-eCCCEEEEEECCCC---CeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEC
Confidence 3455678889999988776644 47899999998765 33333444456678899988544 4456667789999999
Q ss_pred CCCceEEEEecCCCCceeEEEeCCC-----CeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEE
Q psy13629 205 DGKKRKVLYWEDIDQPRAIALVPQD-----SIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 205 dg~~~~~l~~~~~~~P~~iavdp~~-----g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLY 279 (395)
.+.....+. ........+++.|.. +.++.+- +....|...++.. ......+..+....+.+++.+.++.|.
T Consensus 137 ~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~sp~g~~l~ 212 (319)
T 3frx_A 137 KGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISA-GNDKMVKAWNLNQ--FQIEADFIGHNSNINTLTASPDGTLIA 212 (319)
T ss_dssp TSCEEEEEC-CCSSCEEEEEECCC------CCEEEEE-ETTSCEEEEETTT--TEEEEEECCCCSCEEEEEECTTSSEEE
T ss_pred CCCeEEEEe-ccCCcEEEEEEccCCCCCCCccEEEEE-eCCCEEEEEECCc--chhheeecCCCCcEEEEEEcCCCCEEE
Confidence 887655554 445567788888753 2244444 3356677777765 333333334455678888887666555
Q ss_pred Eeccceeeeeeeccccceee
Q psy13629 280 WIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 280 waD~~~~~I~~~~~dG~~~~ 299 (395)
.+. .++.|..-++......
T Consensus 213 s~~-~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 213 SAG-KDGEIMLWNLAAKKAM 231 (319)
T ss_dssp EEE-TTCEEEEEETTTTEEE
T ss_pred EEe-CCCeEEEEECCCCcEE
Confidence 443 4566777676554433
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.23 Score=52.17 Aligned_cols=183 Identities=10% Similarity=0.081 Sum_probs=107.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC-------------CeEEEEEccCCCCCceEEEEeCCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT-------------EMISCCTFDGNNVGSKHNVITNGLI 175 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~-------------~~I~~~~~dg~~~~~~~~i~~~~~~ 175 (395)
+|+++++++........... ...+++|+++ +.||++.... ..|++.++.+.. ....++.....
T Consensus 190 ~i~v~dl~tg~~~~~~~~~~-~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~--~~~~lv~~~~~ 265 (741)
T 1yr2_A 190 TVKFVGVADGKPLADELKWV-KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ--SADQPVFATPE 265 (741)
T ss_dssp EEEEEETTTCCEEEEEEEEE-ESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCG--GGCEEEECCTT
T ss_pred EEEEEECCCCCCCCccCCCc-eeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCc--hhCEEEeccCC
Confidence 58889998743322211111 1246889999 8898886432 358888886542 11233433322
Q ss_pred ---CcceEEEecCCCeEEEEeC----CCCeEEEEECCCC--c-eEEEEecCCCCceeEEEeCCCCeEEEEeeC--CCCeE
Q psy13629 176 ---TPDGLAIDWLTEKLYWTDS----ETNKLEVSSLDGK--K-RKVLYWEDIDQPRAIALVPQDSIMFWTDWG--EVPKI 243 (395)
Q Consensus 176 ---~p~glAVD~~~~~LYwtd~----~~~~I~v~~ldg~--~-~~~l~~~~~~~P~~iavdp~~g~LYwtd~~--~~~~I 243 (395)
...++++.+.++.|+++.. ....|++.++++. . .+.+. .....-... ++|.++.||+.... ...+|
T Consensus 266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l 343 (741)
T 1yr2_A 266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI-PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKI 343 (741)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-CSSSSCEEE-EEEETTEEEEEECTTCTTCEE
T ss_pred CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-CCCCceEEE-EeccCCEEEEEECCCCCCCEE
Confidence 2457888887877877653 3568999999876 4 44554 332222333 45778888877532 35789
Q ss_pred EEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEecc--ceeeeeeeccccceee
Q psy13629 244 ERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDG--RLTFIEVMDYDGYVRL 299 (395)
Q Consensus 244 ~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~--~~~~I~~~~~dG~~~~ 299 (395)
+++++++.....+.++...-....+++++ +++|+++-. ...+|..++++|....
T Consensus 344 ~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 344 VRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp EEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred EEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence 99999862112344444332223445554 677777643 3456777777765433
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.19 Score=50.39 Aligned_cols=160 Identities=8% Similarity=-0.046 Sum_probs=102.8
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCC---CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEE
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGT---EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEV 201 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~---~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v 201 (395)
......+.+++|++.++.|+...... +.|+.++ .. .....+......+..+++.+.++.+..+-...+.|.+
T Consensus 113 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v 187 (615)
T 1pgu_A 113 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SG---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 187 (615)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TC---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred hcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CC---CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 33566789999999999888776432 3455444 22 2233333445668889999877656667777899999
Q ss_pred EECCCCceEEEEecCCC---CceeEEEeCC-CCeEEEEeeCCCCeEEEEecCCCCcceEEEE-e---cCCcCceeEEEec
Q psy13629 202 SSLDGKKRKVLYWEDID---QPRAIALVPQ-DSIMFWTDWGEVPKIERGAMNGDPRHRKVIV-D---STIFWPNGIAIDF 273 (395)
Q Consensus 202 ~~ldg~~~~~l~~~~~~---~P~~iavdp~-~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv-~---~~~~~P~glalD~ 273 (395)
.++........+..... ....++++|. ..+|+... ....|...++.. ......+ . .+......+++.
T Consensus 188 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~v~~~~~~- 262 (615)
T 1pgu_A 188 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG--SDRKISCFDGKS--GEFLKYIEDDQEPVQGGIFALSWL- 262 (615)
T ss_dssp EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE--TTCCEEEEETTT--CCEEEECCBTTBCCCSCEEEEEES-
T ss_pred EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe--CCCeEEEEECCC--CCEeEEecccccccCCceEEEEEc-
Confidence 99887666555544444 6889999998 65665544 246688888764 2222222 2 344467778887
Q ss_pred cccEEEEeccceeeeeeecccc
Q psy13629 274 NNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 274 ~~~rLYwaD~~~~~I~~~~~dG 295 (395)
.+..|+.+. ..+.|...++..
T Consensus 263 ~~~~l~~~~-~d~~i~~wd~~~ 283 (615)
T 1pgu_A 263 DSQKFATVG-ADATIRVWDVTT 283 (615)
T ss_dssp SSSEEEEEE-TTSEEEEEETTT
T ss_pred CCCEEEEEc-CCCcEEEEECCC
Confidence 555555443 446666666553
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.65 Score=43.65 Aligned_cols=161 Identities=10% Similarity=0.031 Sum_probs=102.6
Q ss_pred ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC-CCeEEEEeCCCCeEEEE
Q psy13629 124 IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL-TEKLYWTDSETNKLEVS 202 (395)
Q Consensus 124 ~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~-~~~LYwtd~~~~~I~v~ 202 (395)
+........+++|.+.++.|+-+. .++.|...+++.. .....+.........+++.+. .+++.++-...+.|.+.
T Consensus 150 ~~~h~~~v~~~~~~~~~~~l~t~s-~D~~v~lwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 150 VAMHTNYLSACSFTNSDMQILTAS-GDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTC---CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred eeccCCcEEEEEEeCCCCEEEEEe-CCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 334556678999999888776544 7889999998765 223333333445667777664 34666677778899999
Q ss_pred ECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC--CcCceeEEEeccccEEEE
Q psy13629 203 SLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST--IFWPNGIAIDFNNRLLYW 280 (395)
Q Consensus 203 ~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~--~~~P~glalD~~~~rLYw 280 (395)
++........+.......++++++|....|.... ....|...++.. .......... ......+++.+.+..|+.
T Consensus 226 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s--~D~~v~lwd~~~--~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS--DDATCRLYDLRA--DREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTT--TEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred ECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe--CCCeEEEEECCC--CcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 9987766555544456788999999776665443 345677777765 2222222221 223567777766665555
Q ss_pred eccceeeeeeecc
Q psy13629 281 IDGRLTFIEVMDY 293 (395)
Q Consensus 281 aD~~~~~I~~~~~ 293 (395)
+. ..+.|..-++
T Consensus 302 g~-~d~~i~vwd~ 313 (354)
T 2pbi_B 302 GY-NDYTINVWDV 313 (354)
T ss_dssp EE-TTSCEEEEET
T ss_pred EE-CCCcEEEEEC
Confidence 43 3456666665
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.35 Score=53.46 Aligned_cols=166 Identities=9% Similarity=-0.062 Sum_probs=110.5
Q ss_pred EecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEE
Q psy13629 123 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVS 202 (395)
Q Consensus 123 ~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~ 202 (395)
.+......+.+++|++.++.|.... .++.|..++.... .....+......+.++++.+.++.|. +-...+.|.+.
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~i~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCG-ADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSYIA-TCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEe-CCCeEEEEECCCC---CEEEEeccCCCCEEEEEEecCCCEEE-EEeCCCeEEEE
Confidence 3445667789999999888776554 7889999998765 23333344456788999998666665 44467899999
Q ss_pred ECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEec
Q psy13629 203 SLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 203 ~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD 282 (395)
++........+.........++++|..+..+..-.+....|...+++. ......+..+....+.+++.+.++.|..+.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~--~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ--KECRNTMFGHTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS--SSEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC--cchhheecCCCCCEEEEEEecCCCEEEEEE
Confidence 998776665555566778899999864433332223456788888876 333333444555678888987666555543
Q ss_pred cceeeeeeeccccc
Q psy13629 283 GRLTFIEVMDYDGY 296 (395)
Q Consensus 283 ~~~~~I~~~~~dG~ 296 (395)
..+.|..-++...
T Consensus 763 -~dg~v~vwd~~~~ 775 (1249)
T 3sfz_A 763 -ADGTLRLWDVRSA 775 (1249)
T ss_dssp -SSSEEEEEEGGGT
T ss_pred -CCCeEEEEeCCCC
Confidence 4456666665443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=96.37 E-value=0.15 Score=53.45 Aligned_cols=186 Identities=12% Similarity=0.014 Sum_probs=108.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC---------------
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG--------------- 173 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~--------------- 173 (395)
++.++++.+ .+...+..........+|++++++|.++. ++.|+..+.++.. ...+...+
T Consensus 93 ~~~~~d~~~-~~~~~l~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~~---~~~lt~~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 93 SYDIYDLNK-RQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLP---SYRITWTGKEDIIYNGITDWVYE 166 (740)
T ss_dssp EEEEEETTT-TEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSC---CEECCSCCBTTTEEESBCCHHHH
T ss_pred EEEEEECCC-CcEEEcccCCCcceeeEECCCCCEEEEEE--CCeEEEEECCCCc---eEEEcCCCCccceecCccccccc
Confidence 456788876 44444444456678899999999888774 4678888877652 22222221
Q ss_pred ---CCCcceEEEecCCCeEEEEe--CC---------------------------------CCeEEEEECCC---C---ce
Q psy13629 174 ---LITPDGLAIDWLTEKLYWTD--SE---------------------------------TNKLEVSSLDG---K---KR 209 (395)
Q Consensus 174 ---~~~p~glAVD~~~~~LYwtd--~~---------------------------------~~~I~v~~ldg---~---~~ 209 (395)
+....+++..+.++.|.++. .. ..+|.+.++++ . ..
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~ 246 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS 246 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence 12234578888777776652 11 01577888887 5 33
Q ss_pred EEEEec-----CCCCceeEEEeCCCCeEEEEeeCC--CCeEEEEecCCCC------cceEEEEecCCcC-----ceeEEE
Q psy13629 210 KVLYWE-----DIDQPRAIALVPQDSIMFWTDWGE--VPKIERGAMNGDP------RHRKVIVDSTIFW-----PNGIAI 271 (395)
Q Consensus 210 ~~l~~~-----~~~~P~~iavdp~~g~LYwtd~~~--~~~I~~~~~dG~~------~~~~~lv~~~~~~-----P~glal 271 (395)
..+... .......++.+|+++.++...... ...|..++.++.. ..++++...+-.| +...++
T Consensus 247 ~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 247 IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF 326 (740)
T ss_dssp EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred EEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence 333210 223356678898876444333232 3468888887621 0122222333222 336677
Q ss_pred eccccEEE-Ee--ccceeeeeeeccccceeee
Q psy13629 272 DFNNRLLY-WI--DGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 272 D~~~~rLY-wa--D~~~~~I~~~~~dG~~~~~ 300 (395)
.++++.|+ |+ +.+...|+.++.+|...+.
T Consensus 327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 327 TLDGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred cCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 77787776 66 2345778888888765544
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.27 Score=46.73 Aligned_cols=176 Identities=9% Similarity=0.020 Sum_probs=101.6
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~~~~p~glAVD~~~~ 187 (395)
.|++.++.. ............+.+++|+++++.|.... .+.+.++...... ....... ..-.....+++.+.+.
T Consensus 158 ~i~iwd~~~-~~~~~~~~~~~~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 158 IMRIIDPSD-LTEKFEIETRGEVKDLHFSTDGKVVAYIT--GSSLEVISTVTGS--CIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp EEEEEETTT-TEEEEEEECSSCCCEEEECTTSSEEEEEC--SSCEEEEETTTCC--EEEEECCCCTTEEEEEEEEEETTE
T ss_pred EEEEeECCC-CcEEEEeCCCCceEEEEEccCCceEEecc--ceeEEEEEeccCc--ceeeeecCCCCCCEEEEEEcCCCC
Confidence 588888876 44444445667789999999988776543 4556666655331 1111111 1223467788888666
Q ss_pred eEEEEeCCC-C--eEEEEECCCCceEE----EEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe
Q psy13629 188 KLYWTDSET-N--KLEVSSLDGKKRKV----LYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD 260 (395)
Q Consensus 188 ~LYwtd~~~-~--~I~v~~ldg~~~~~----l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~ 260 (395)
.+..+.... . .+...++....... .+........+++++|++.+|.... ....|...++... .....+..
T Consensus 233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs--~D~~V~iwd~~~~-~~~~~~~~ 309 (365)
T 4h5i_A 233 VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS--NDNSIALVKLKDL-SMSKIFKQ 309 (365)
T ss_dssp EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE--TTSCEEEEETTTT-EEEEEETT
T ss_pred EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc--CCCEEEEEECCCC-cEEEEecC
Confidence 665543222 1 45555554443322 1223455678999999877776544 2456777787641 22223334
Q ss_pred cCCcCceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 261 STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 261 ~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
.+....+.+++.++++.| .+-+.+++|...++
T Consensus 310 gH~~~V~~v~fSpdg~~l-aS~S~D~tvrvw~i 341 (365)
T 4h5i_A 310 AHSFAITEVTISPDSTYV-ASVSAANTIHIIKL 341 (365)
T ss_dssp SSSSCEEEEEECTTSCEE-EEEETTSEEEEEEC
T ss_pred cccCCEEEEEECCCCCEE-EEEeCCCeEEEEEc
Confidence 456678899999766544 33334455554443
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.048 Score=51.32 Aligned_cols=169 Identities=9% Similarity=-0.004 Sum_probs=94.9
Q ss_pred EEEEeeCCCCC---ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-CCCCcceEEEec
Q psy13629 109 DIRIANLSRPL---KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-GLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~---~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-~~~~p~glAVD~ 184 (395)
.|++.++.... ....+......+..++|++.++.|+... .++.|..++++..........+.. ....+..+++.+
T Consensus 78 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 78 NAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS-GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp SEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE-SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred eEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe-cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 57777776533 2334445667789999999887776655 678888888876421001222333 455688899998
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCc---------------eEEEEe--cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKK---------------RKVLYW--EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA 247 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~---------------~~~l~~--~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~ 247 (395)
.++.|. +-...+.|.+.++.... ...++. ........++++|...+|+... ....|...+
T Consensus 157 ~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~i~iwd 233 (377)
T 3dwl_C 157 NNVLLA-AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG--HDSSVTIAY 233 (377)
T ss_dssp TSSEEE-EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE--TTTEEC-CE
T ss_pred CCCEEE-EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe--CCCcEEEEE
Confidence 555554 54556889999875211 111221 2344578999999887777654 245677777
Q ss_pred cCCCCcce--EEEEecCCcCceeEEEeccccEEEEe
Q psy13629 248 MNGDPRHR--KVIVDSTIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 248 ~dG~~~~~--~~lv~~~~~~P~glalD~~~~rLYwa 281 (395)
+....... ...+..+......+++.+++..|..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp ECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred CCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence 76521100 11222334456788888666555444
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.23 Score=45.64 Aligned_cols=174 Identities=11% Similarity=-0.006 Sum_probs=104.9
Q ss_pred EEEEeeC-CCCCccEEecC--CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccC---------CCCCceEEEEeCCCCC
Q psy13629 109 DIRIANL-SRPLKPVTIIK--DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDG---------NNVGSKHNVITNGLIT 176 (395)
Q Consensus 109 ~I~~~~l-~~~~~~~~~~~--~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg---------~~~~~~~~i~~~~~~~ 176 (395)
.|++.++ .. .....+.. ....+.+++|++ ++.|+.. ..++.|..+++.. ... .. .......
T Consensus 80 ~i~~wd~~~~-~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~--~~--~~~~~~~ 152 (342)
T 1yfq_A 80 EILKVDLIGS-PSFQALTNNEANLGICRICKYG-DDKLIAA-SWDGLIEVIDPRNYGDGVIAVKNLN--SN--NTKVKNK 152 (342)
T ss_dssp CEEEECSSSS-SSEEECBSCCCCSCEEEEEEET-TTEEEEE-ETTSEEEEECHHHHTTBCEEEEESC--SS--SSSSCCC
T ss_pred eEEEEEeccC-CceEeccccCCCCceEEEEeCC-CCEEEEE-cCCCeEEEEcccccccccccccCCe--ee--EEeeCCc
Confidence 6788888 66 44455555 667789999999 6665544 4788899888764 210 00 0112245
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEECCC-Cc--eEEEEecCCCCceeEEEeC-CCCeEEEEeeCCCCeEEEEecCCC-
Q psy13629 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDG-KK--RKVLYWEDIDQPRAIALVP-QDSIMFWTDWGEVPKIERGAMNGD- 251 (395)
Q Consensus 177 p~glAVD~~~~~LYwtd~~~~~I~v~~ldg-~~--~~~l~~~~~~~P~~iavdp-~~g~LYwtd~~~~~~I~~~~~dG~- 251 (395)
+.++++++ +.++.+ ...+.|.+.++.. .. ...........+..++++| ...+++... . ...|...+++..
T Consensus 153 v~~~~~~~--~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~-dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 153 IFTMDTNS--SRLIVG-MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-I-DGRVAVEFFDDQG 227 (342)
T ss_dssp EEEEEECS--SEEEEE-ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-T-TSEEEEEECCTTC
T ss_pred eEEEEecC--CcEEEE-eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-c-CCcEEEEEEcCCC
Confidence 66677664 335444 4568999999987 33 2233323456789999999 776666554 2 456666566542
Q ss_pred ----CcceEEEEecCC---------cCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 252 ----PRHRKVIVDSTI---------FWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 252 ----~~~~~~lv~~~~---------~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
...... +..+. ...+.+++++.++.|+.+. ..+.|...++...
T Consensus 228 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 228 DDYNSSKRFA-FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTR 283 (342)
T ss_dssp CSTTCTTCEE-EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-TTSCEEEEETTTT
T ss_pred ccccccccee-eecccccccccccceeEEEEEEcCCCCEEEEec-CCceEEEEcCccH
Confidence 022222 22222 2677888887766666554 3456666666533
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.24 Score=45.38 Aligned_cols=156 Identities=12% Similarity=0.077 Sum_probs=92.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|..++.++ ...............+..|.. +.||++. +.|++++.+|. ...........+.++++|. .++
T Consensus 158 ~l~~~d~~g-~~~~~~~~~~~~~~~~~~d~~-g~l~v~t---~~l~~~d~~g~----~~~~~~~~~~~~~~~~~~~-~g~ 227 (330)
T 3hxj_A 158 YLYAINPDG-TEKWRFKTNDAITSAASIGKD-GTIYFGS---DKVYAINPDGT----EKWNFYAGYWTVTRPAISE-DGT 227 (330)
T ss_dssp EEEEECTTS-CEEEEEECSSCCCSCCEECTT-CCEEEES---SSEEEECTTSC----EEEEECCSSCCCSCCEECT-TSC
T ss_pred EEEEECCCC-CEeEEEecCCCceeeeEEcCC-CEEEEEe---CEEEEECCCCc----EEEEEccCCcceeceEECC-CCe
Confidence 566666653 322222222334555666654 4577665 78888885553 2222223335678899986 568
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
||+... .+.|.+++.+|......- .....+..+++++ ++.||++.. ...|.+.+.+| ... ......-.....
T Consensus 228 l~v~t~-~~gl~~~~~~g~~~~~~~-~~~~~~~~~~~~~-~g~l~v~t~--~ggl~~~d~~g--~~~-~~~~~~~~~~~~ 299 (330)
T 3hxj_A 228 IYVTSL-DGHLYAINPDGTEKWRFK-TGKRIESSPVIGN-TDTIYFGSY--DGHLYAINPDG--TEK-WNFETGSWIIAT 299 (330)
T ss_dssp EEEEET-TTEEEEECTTSCEEEEEE-CSSCCCSCCEECT-TSCEEEECT--TCEEEEECTTS--CEE-EEEECSSCCCSC
T ss_pred EEEEcC-CCeEEEECCCCCEeEEee-CCCCccccceEcC-CCeEEEecC--CCCEEEECCCC--cEE-EEEEcCCccccc
Confidence 888764 467888888776654443 3334456677774 678988762 34788888776 222 222222234556
Q ss_pred EEEeccccEEEEecc
Q psy13629 269 IAIDFNNRLLYWIDG 283 (395)
Q Consensus 269 lalD~~~~rLYwaD~ 283 (395)
+.+| .+++||++..
T Consensus 300 ~~~d-~~g~l~~gt~ 313 (330)
T 3hxj_A 300 PVID-ENGTIYFGTR 313 (330)
T ss_dssp CEEC-TTCCEEEECT
T ss_pred eEEc-CCCEEEEEcC
Confidence 6776 4567887763
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=96.24 E-value=0.76 Score=42.76 Aligned_cols=173 Identities=8% Similarity=-0.031 Sum_probs=105.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe---CCCCCcceEEEecC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT---NGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~---~~~~~p~glAVD~~ 185 (395)
.|++.++........+......+.+++|++.++.|+-.. .++.|...++.+. ...... ........++..+.
T Consensus 99 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~-~d~~i~~wd~~~~----~~~~~~~~~~~~~~v~~~~~~~~ 173 (343)
T 2xzm_R 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG-AEREIKLWNILGE----CKFSSAEKENHSDWVSCVRYSPI 173 (343)
T ss_dssp EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE-TTSCEEEEESSSC----EEEECCTTTSCSSCEEEEEECCC
T ss_pred cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc-CCCEEEEEeccCC----ceeeeecccCCCceeeeeeeccc
Confidence 688888876344445555677889999999988776554 7889999998753 111111 11233556666654
Q ss_pred C---------CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceE
Q psy13629 186 T---------EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRK 256 (395)
Q Consensus 186 ~---------~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~ 256 (395)
. +.++.+-...+.|.+.+.++.....+. ........++++|...+|.-.. ....|...++........
T Consensus 174 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs--~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 174 MKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFK-AHESNVNHLSISPNGKYIATGG--KDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp CCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEE--TTCEEEEEESSCCSSCSE
T ss_pred cccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEc-CccccceEEEECCCCCEEEEEc--CCCeEEEEECCCCcccce
Confidence 4 145566667889999996655444433 4456788999999777665443 356677777733112222
Q ss_pred EEEecCCcCceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 257 VIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 257 ~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
.+-.. ...+.+++++.+..|..+ ..+.|...++
T Consensus 251 ~~~~~--~~v~~v~~sp~~~~la~~--~d~~v~iw~~ 283 (343)
T 2xzm_R 251 EFDAG--STINQIAFNPKLQWVAVG--TDQGVKIFNL 283 (343)
T ss_dssp EEECS--SCEEEEEECSSSCEEEEE--ESSCEEEEES
T ss_pred eecCC--CcEEEEEECCCCCEEEEE--CCCCEEEEEe
Confidence 22121 246778888766544333 2334444443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.4 Score=50.27 Aligned_cols=184 Identities=13% Similarity=0.151 Sum_probs=107.8
Q ss_pred EEEEeeCCCCCc-cEEecCCCC---CeEEEEEEcCCCEEEEEECC----CCeEEEEEccCCCCCceEEEEeCCCCCcceE
Q psy13629 109 DIRIANLSRPLK-PVTIIKDLE---EGAAIDYYYKKSMVCWTDHG----TEMISCCTFDGNNVGSKHNVITNGLITPDGL 180 (395)
Q Consensus 109 ~I~~~~l~~~~~-~~~~~~~~~---~~~gl~~d~~~~~lywsd~~----~~~I~~~~~dg~~~~~~~~i~~~~~~~p~gl 180 (395)
.|.+.++.+... ...+..... ...+++++++++.|+++... ...|+..++++........+. .........
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~ 322 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI-PDLKAQWDF 322 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-CSSSSCEEE
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-CCCCceEEE
Confidence 466677654221 233333322 36789999999988877532 458999988764100023333 222222222
Q ss_pred EEecCCCeEEEEeC---CCCeEEEEECCCC--ceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcc
Q psy13629 181 AIDWLTEKLYWTDS---ETNKLEVSSLDGK--KRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRH 254 (395)
Q Consensus 181 AVD~~~~~LYwtd~---~~~~I~v~~ldg~--~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~ 254 (395)
+++.++.||+... .+.+|.+.++++. ..+.++...-....+++++ ++.|+++... ...+|+..+++| ..
T Consensus 323 -~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g--~~ 397 (741)
T 1yr2_A 323 -VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDG--KP 397 (741)
T ss_dssp -EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTS--CE
T ss_pred -EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCC--Cc
Confidence 3466888888753 2568999999873 4556664333334556665 6777777533 456788888887 43
Q ss_pred eEEEEecCCcCceeEEEeccccEEEEec---cceeeeeeecccccee
Q psy13629 255 RKVIVDSTIFWPNGIAIDFNNRLLYWID---GRLTFIEVMDYDGYVR 298 (395)
Q Consensus 255 ~~~lv~~~~~~P~glalD~~~~rLYwaD---~~~~~I~~~~~dG~~~ 298 (395)
.+.+...+.....+++.+.+++.|+++- .....|+..++++...
T Consensus 398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 398 AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 3333222233456677776666666542 3446788888765443
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.033 Score=52.52 Aligned_cols=184 Identities=5% Similarity=-0.082 Sum_probs=101.6
Q ss_pred EEEEeeCCCC--CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRP--LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~--~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|++.++... .....+......+.+++|++.++.|+... .++.|..++++.................+..+++.+.+
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 112 (377)
T 3dwl_C 34 QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS-QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE 112 (377)
T ss_dssp CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE-TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS
T ss_pred EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe-CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC
Confidence 4566666542 11222334456789999999877666554 67889888887642001122333344567788888765
Q ss_pred CeEEEEeCCCCeEEEEECCCCce---EEEEec-CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc---------
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKR---KVLYWE-DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR--------- 253 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~---~~l~~~-~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~--------- 253 (395)
+.|+... ..+.|.+.+++.... ...+.. .......++++|...+|..... ...|...+++....
T Consensus 113 ~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~ 189 (377)
T 3dwl_C 113 DKFAVGS-GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA--DRKAYVLSAYVRDVDAKPEASVW 189 (377)
T ss_dssp SCCEEEE-SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES--SSCEEEEEECCSSCC-CCCSCSS
T ss_pred CEEEEEe-cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC--CCEEEEEEEEecccCCCcccccc
Confidence 5565444 567899999887652 233323 4667899999997777765542 34566666531000
Q ss_pred ----ceEEEEe--cCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 254 ----HRKVIVD--STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 254 ----~~~~lv~--~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
.....+. .+......+++++.++.|+.+. ..+.|...++....
T Consensus 190 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 190 GSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG-HDSSVTIAYPSAPE 238 (377)
T ss_dssp CSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE-TTTEEC-CEECSTT
T ss_pred ccccchhhhhhcccCCceEEEEEECCCCCEEEEEe-CCCcEEEEECCCCC
Confidence 0011111 3444578888987777666654 34566666655443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.91 Score=46.85 Aligned_cols=178 Identities=10% Similarity=0.017 Sum_probs=111.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC---CCCCcceEEEecC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN---GLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~---~~~~p~glAVD~~ 185 (395)
.|++.++........+......+.+++|++.++.|.- ...++.|...+..+. ....+... .......+++.+.
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~s~D~~i~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS-ASRDRTIKLWNTLGE---CKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE-EETTSCEEEECTTSC---EEEEECSSTTSCSSCEEEEEECSC
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEE-EeCCCEEEEEECCCC---cceeeccCCCCCCCcEEEEEEeCC
Confidence 7888888763344455566778999999998877654 447888988887664 22222221 1233667888775
Q ss_pred C-CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCc
Q psy13629 186 T-EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIF 264 (395)
Q Consensus 186 ~-~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~ 264 (395)
+ +.+..+-...+.|.+.++........+.......+.++++|...+|.-.. ....|...++.. .+.+.....-.
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~--~Dg~i~iwd~~~---~~~~~~~~~~~ 603 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG--KDGVVLLWDLAE---GKKLYSLEANS 603 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSBCEEEETTT---TEEEECCBCSS
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCC---CceEEEecCCC
Confidence 4 24556666788999999988776655545556789999999776665443 245666777754 22222222233
Q ss_pred CceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 265 WPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 265 ~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
..+.+++++.+..|..+. .+.|..-++....
T Consensus 604 ~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT--EHGIKIWDLESKS 634 (694)
T ss_dssp CEEEEEECSSSSEEEEEE--TTEEEEEETTTTE
T ss_pred cEEEEEEcCCCcEEEEEc--CCCEEEEECCCCC
Confidence 466777876655444433 3446555555443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.32 Score=51.16 Aligned_cols=184 Identities=10% Similarity=-0.001 Sum_probs=109.5
Q ss_pred EEEEeeCCCC-Cc-cEEecCCCCCeEEEEEEcC--CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRP-LK-PVTIIKDLEEGAAIDYYYK--KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~-~~-~~~~~~~~~~~~gl~~d~~--~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.|++.++.+. .. ...+......+.+++|.+. ++.|+ +...++.|...++++... ............+..+++.+
T Consensus 32 ~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~-s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp 109 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA-SCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAP 109 (753)
T ss_dssp EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEE-EEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECC
T ss_pred cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEE-EEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECC
Confidence 5777776531 12 2233445667889999876 55554 555788999999887510 01222333445678899987
Q ss_pred CC-CeEEEEeCCCCeEEEEECCCCce--EEEEecCCCCceeEEEeCC-------------CCeEEEEeeCCCCeEEEEec
Q psy13629 185 LT-EKLYWTDSETNKLEVSSLDGKKR--KVLYWEDIDQPRAIALVPQ-------------DSIMFWTDWGEVPKIERGAM 248 (395)
Q Consensus 185 ~~-~~LYwtd~~~~~I~v~~ldg~~~--~~l~~~~~~~P~~iavdp~-------------~g~LYwtd~~~~~~I~~~~~ 248 (395)
.. ++++++-...+.|.+.++..... ...+.........++++|. ...|+.+. . ...|...++
T Consensus 110 ~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~-dg~I~iwd~ 187 (753)
T 3jro_A 110 HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A-DNLVKIWKY 187 (753)
T ss_dssp GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE-T-TSCEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE-C-CCeEEEEec
Confidence 62 45555666788999999987622 2333345567889999985 44444443 2 455777766
Q ss_pred CCCCcceEE--EEecCCcCceeEEEeccc--cEEEEeccceeeeeeeccccc
Q psy13629 249 NGDPRHRKV--IVDSTIFWPNGIAIDFNN--RLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 249 dG~~~~~~~--lv~~~~~~P~glalD~~~--~rLYwaD~~~~~I~~~~~dG~ 296 (395)
......... .+..+-.....+++.+.. +++..+-...+.|..-+++..
T Consensus 188 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred cCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 542111121 222344567788888773 444555445566766666543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=96.05 E-value=1.5 Score=44.51 Aligned_cols=176 Identities=5% Similarity=-0.056 Sum_probs=105.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+..++|++.++.|. +...++.|...++..... ..............++++++.++.
T Consensus 40 ~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la-sg~~d~~v~lWd~~~~~~-~~~~~~~~~~~~v~~v~fs~dg~~ 117 (611)
T 1nr0_A 40 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA-SGDVHGNVRIWDTTQTTH-ILKTTIPVFSGPVKDISWDSESKR 117 (611)
T ss_dssp EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEESSSTTC-CEEEEEECSSSCEEEEEECTTSCE
T ss_pred EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEE-EEeCCCCEEEeECCCCcc-eeeEeecccCCceEEEEECCCCCE
Confidence 677777765344555666677889999999887665 444788999999853211 112223333456789999998887
Q ss_pred EEEEeCCC---CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcC
Q psy13629 189 LYWTDSET---NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFW 265 (395)
Q Consensus 189 LYwtd~~~---~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~ 265 (395)
|..+.... +.|...+. |.....+ .......+.++++|....+..+- +....|...+... ......+..+-..
T Consensus 118 l~~~~~~~~~~~~v~~wd~-~~~~~~l-~gh~~~v~~v~f~p~~~~~l~s~-s~D~~v~lwd~~~--~~~~~~l~~H~~~ 192 (611)
T 1nr0_A 118 IAAVGEGRERFGHVFLFDT-GTSNGNL-TGQARAMNSVDFKPSRPFRIISG-SDDNTVAIFEGPP--FKFKSTFGEHTKF 192 (611)
T ss_dssp EEEEECCSSCSEEEEETTT-CCBCBCC-CCCSSCEEEEEECSSSSCEEEEE-ETTSCEEEEETTT--BEEEEEECCCSSC
T ss_pred EEEEECCCCceeEEEEeeC-CCCccee-cCCCCCceEEEECCCCCeEEEEE-eCCCeEEEEECCC--CeEeeeeccccCc
Confidence 77665432 24555442 2222222 23445678999999877655554 3345566666543 2222333445556
Q ss_pred ceeEEEeccccEEEEeccceeeeeeec
Q psy13629 266 PNGIAIDFNNRLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 266 P~glalD~~~~rLYwaD~~~~~I~~~~ 292 (395)
.+.+++.++++.|.-+ ..++.|..-+
T Consensus 193 V~~v~fspdg~~las~-s~D~~i~lwd 218 (611)
T 1nr0_A 193 VHSVRYNPDGSLFAST-GGDGTIVLYN 218 (611)
T ss_dssp EEEEEECTTSSEEEEE-ETTSCEEEEE
T ss_pred eEEEEECCCCCEEEEE-ECCCcEEEEE
Confidence 7888888766544433 3345554444
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=96.03 E-value=1.2 Score=43.05 Aligned_cols=180 Identities=12% Similarity=-0.069 Sum_probs=109.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec-CCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW-LTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~-~~~ 187 (395)
.|++.++........+......+.+++|.+.+ ++++...++.|...+++.. .....+.........+++.+ .++
T Consensus 143 ~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~ 217 (464)
T 3v7d_B 143 MIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKG---CCTHVFEGHNSTVRCLDIVEYKNI 217 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEEESSSC
T ss_pred cEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCC---cEEEEECCCCCccEEEEEecCCCC
Confidence 68888887633344445567788999998765 5556668899999999865 33333444455677888875 344
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEE---------------------ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEE
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLY---------------------WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERG 246 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~---------------------~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~ 246 (395)
.+.++-...+.|.+.++......... ........-.++++...+|+... ....|...
T Consensus 218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~--~d~~i~vw 295 (464)
T 3v7d_B 218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS--YDNTLIVW 295 (464)
T ss_dssp EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE--TTSCEEEE
T ss_pred CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe--CCCeEEEE
Confidence 66667667889999998765432110 01111122234455566666554 24567777
Q ss_pred ecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 247 AMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 247 ~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
++.. ......+..+......+++++.+..|+.+. .++.|...+++....
T Consensus 296 d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~ 344 (464)
T 3v7d_B 296 DVAQ--MKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENGEL 344 (464)
T ss_dssp ETTT--TEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTTEE
T ss_pred ECCC--CcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcE
Confidence 7765 233233334445677888887777666554 456677777654333
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=1.6 Score=48.06 Aligned_cols=135 Identities=9% Similarity=0.019 Sum_probs=94.1
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC-CC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL-TE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~-~~ 187 (395)
.|++.++........+......+.+++|++.++.|..+. .++.|..+++... ...............+++.+. ++
T Consensus 638 ~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~ 713 (1249)
T 3sfz_A 638 TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS-ADKKVKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSNH 713 (1249)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSSC
T ss_pred eEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEe-CCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEecCCCc
Confidence 678888876444445555677889999999888776655 7889999999865 333344444556778888764 33
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
.+..+-...+.|.+.+++.......+........+++++|...+|.... . ...|...++.
T Consensus 714 ~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~-dg~v~vwd~~ 773 (1249)
T 3sfz_A 714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-A-DGTLRLWDVR 773 (1249)
T ss_dssp CEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEE-S-SSEEEEEEGG
T ss_pred eEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEE-C-CCeEEEEeCC
Confidence 4555666778999999988777666645567788999999877666544 2 3445555554
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.95 E-value=1 Score=46.50 Aligned_cols=180 Identities=7% Similarity=-0.009 Sum_probs=114.3
Q ss_pred EEEEeeCCCCCc-----cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 109 DIRIANLSRPLK-----PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 109 ~I~~~~l~~~~~-----~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
.|++.++..... ...+......+..++|++.++.|. +...++.|...++... .....+........++++.
T Consensus 406 ~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~-sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~v~~~~~s 481 (694)
T 3dm0_A 406 SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL-SGSWDGELRLWDLAAG---VSTRRFVGHTKDVLSVAFS 481 (694)
T ss_dssp EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEC
T ss_pred cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEE-EEeCCCcEEEEECCCC---cceeEEeCCCCCEEEEEEe
Confidence 678887765211 123444566788999999887666 4447899999998764 2333344445668889998
Q ss_pred cCCCeEEEEeCCCCeEEEEECCCCceEEEEec---CCCCceeEEEeCCCC-eEEEEeeCCCCeEEEEecCCCCcceEEEE
Q psy13629 184 WLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE---DIDQPRAIALVPQDS-IMFWTDWGEVPKIERGAMNGDPRHRKVIV 259 (395)
Q Consensus 184 ~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~---~~~~P~~iavdp~~g-~LYwtd~~~~~~I~~~~~dG~~~~~~~lv 259 (395)
+.++.|. +-...+.|.+.+..+.....+... .......++++|... .+..+- +....|...++.. ......+
T Consensus 482 ~~~~~l~-s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~d~~v~vwd~~~--~~~~~~~ 557 (694)
T 3dm0_A 482 LDNRQIV-SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA-SWDKTVKVWNLSN--CKLRSTL 557 (694)
T ss_dssp TTSSCEE-EEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE-ETTSCEEEEETTT--CCEEEEE
T ss_pred CCCCEEE-EEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE-eCCCeEEEEECCC--CcEEEEE
Confidence 8666664 555678899999877655544322 123467889988653 233443 3345677778776 3333344
Q ss_pred ecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 260 DSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 260 ~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
..+....+.++++++++.|. +-..++.|..-++....
T Consensus 558 ~~h~~~v~~v~~spdg~~l~-sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 558 AGHTGYVSTVAVSPDGSLCA-SGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp CCCSSCEEEEEECTTSSEEE-EEETTSBCEEEETTTTE
T ss_pred cCCCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCc
Confidence 45556678899987665544 44445667666664443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=1 Score=41.24 Aligned_cols=122 Identities=7% Similarity=-0.041 Sum_probs=83.5
Q ss_pred ecCCCCCeEEEEEEcCC--CEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEE
Q psy13629 124 IIKDLEEGAAIDYYYKK--SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEV 201 (395)
Q Consensus 124 ~~~~~~~~~gl~~d~~~--~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v 201 (395)
+......+.+++|++.+ +.+.++...++.|..++++.... ............+..+++.+.++.|+ +-...+.|.+
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~i 112 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDDGSKVF-TASCDKTAKM 112 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTTSSEEE-EEETTSEEEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcCCCEEE-EEcCCCcEEE
Confidence 34456778999999986 55666666889999999885211 22234444456788999998665665 4456789999
Q ss_pred EECCCCceEEEEecCCCCceeEEE--eCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 202 SSLDGKKRKVLYWEDIDQPRAIAL--VPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 202 ~~ldg~~~~~l~~~~~~~P~~iav--dp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
.+++......+. .......++++ ++...+|+.+. ....|...++..
T Consensus 113 wd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~ 160 (368)
T 3mmy_A 113 WDLSSNQAIQIA-QHDAPVKTIHWIKAPNYSCVMTGS--WDKTLKFWDTRS 160 (368)
T ss_dssp EETTTTEEEEEE-ECSSCEEEEEEEECSSCEEEEEEE--TTSEEEEECSSC
T ss_pred EEcCCCCceeec-cccCceEEEEEEeCCCCCEEEEcc--CCCcEEEEECCC
Confidence 999987766654 45567889998 66554454433 356688888765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=95.67 E-value=0.93 Score=47.36 Aligned_cols=163 Identities=6% Similarity=0.052 Sum_probs=93.0
Q ss_pred CCeEEEEEEcCCCE-EEEEECCC--CeEEEEEccCCC----CCceEEEE-eC---CCC--CcceEEEecCCCeEE-EEe-
Q psy13629 129 EEGAAIDYYYKKSM-VCWTDHGT--EMISCCTFDGNN----VGSKHNVI-TN---GLI--TPDGLAIDWLTEKLY-WTD- 193 (395)
Q Consensus 129 ~~~~gl~~d~~~~~-lywsd~~~--~~I~~~~~dg~~----~~~~~~i~-~~---~~~--~p~glAVD~~~~~LY-wtd- 193 (395)
.....++|.++++. +++.+... ..|..++.++.. ......++ .. .+. .+...+..+.++.|+ |..
T Consensus 260 ~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~ 339 (740)
T 4a5s_A 260 HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN 339 (740)
T ss_dssp EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC
T ss_pred eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEc
Confidence 34567899998874 44555433 368888887652 00011121 11 111 144677888777776 664
Q ss_pred -CCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-----CCCeEEEEecCCCCcceEEEEecCC----
Q psy13629 194 -SETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-----EVPKIERGAMNGDPRHRKVIVDSTI---- 263 (395)
Q Consensus 194 -~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-----~~~~I~~~~~dG~~~~~~~lv~~~~---- 263 (395)
.+...|++++++|...+.+... ......+. .++++.||++... ....|++++++| ...+..++..+
T Consensus 340 ~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g--~~~~~~lt~~~~~~~ 415 (740)
T 4a5s_A 340 EEGYRHICYFQIDKKDCTFITKG-TWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLID--YTKVTCLSCELNPER 415 (740)
T ss_dssp TTSCEEEEEEETTCSSCEESCCS-SSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTE--EEEEEESSTTTSTTT
T ss_pred CCCceEEEEEECCCCceEecccC-CEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCC--CCcceeeccccCCCC
Confidence 3356899999999887766633 22333332 2338889988743 235899999998 44443444221
Q ss_pred cCceeEEEeccccEEEEeccc--eeeeeeecccc
Q psy13629 264 FWPNGIAIDFNNRLLYWIDGR--LTFIEVMDYDG 295 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~~--~~~I~~~~~dG 295 (395)
..-+...++.+++.+...-.. ...+...+.++
T Consensus 416 ~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~ 449 (740)
T 4a5s_A 416 CQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN 449 (740)
T ss_dssp BCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred CceEEEEECCCCCEEEEEeCCCCCCEEEEEECCC
Confidence 234567777666654444322 23455555543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.88 Score=42.44 Aligned_cols=159 Identities=8% Similarity=-0.012 Sum_probs=94.0
Q ss_pred CeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCc
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~ 208 (395)
....++|++.++.|. +...++.|...++++.... ..... .........+++.+.++.|. +-...+.|.+.+++...
T Consensus 18 ~v~~l~~sp~g~~la-s~~~D~~i~iw~~~~~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~-s~s~D~~v~iw~~~~~~ 94 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLA-SCGGDRRIRIWGTEGDSWI-CKSVLSEGHQRTVRKVAWSPCGNYLA-SASFDATTCIWKKNQDD 94 (345)
T ss_dssp CEEEEEECTTSSCEE-EEETTSCEEEEEEETTEEE-EEEEECSSCSSCEEEEEECTTSSEEE-EEETTSCEEEEEECCC-
T ss_pred cEEEEEECCCCCEEE-EEcCCCeEEEEEcCCCcce-eeeeeccccCCcEEEEEECCCCCEEE-EEECCCcEEEEEccCCC
Confidence 578999999877665 4457888999988865210 11122 22345678899998655554 55567788888877654
Q ss_pred eE--EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce-EEEEecCCcCceeEEEeccccEEEEeccce
Q psy13629 209 RK--VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR-KVIVDSTIFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 209 ~~--~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~-~~lv~~~~~~P~glalD~~~~rLYwaD~~~ 285 (395)
.. ..+........+++++|...+|.-.. ....|...+++...... ...+..+......+++.+.+..|..+. .+
T Consensus 95 ~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d 171 (345)
T 3fm0_A 95 FECVTTLEGHENEVKSVAWAPSGNLLATCS--RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS-YD 171 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE-TT
T ss_pred eEEEEEccCCCCCceEEEEeCCCCEEEEEE--CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe-CC
Confidence 32 22323455689999999777666544 23456666665411111 122333444567778876666554443 33
Q ss_pred eeeeeeccc
Q psy13629 286 TFIEVMDYD 294 (395)
Q Consensus 286 ~~I~~~~~d 294 (395)
+.|...+..
T Consensus 172 ~~i~~w~~~ 180 (345)
T 3fm0_A 172 DTVKLYREE 180 (345)
T ss_dssp SCEEEEEEE
T ss_pred CcEEEEEec
Confidence 445444443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.86 Score=41.13 Aligned_cols=182 Identities=7% Similarity=-0.076 Sum_probs=100.7
Q ss_pred EEEEeeCCCCCc----cEEecCCCCCeEEEEEEcC--CCEEEEEECCCCeEEEEEccCCCCC------ceEEEEeCCCCC
Q psy13629 109 DIRIANLSRPLK----PVTIIKDLEEGAAIDYYYK--KSMVCWTDHGTEMISCCTFDGNNVG------SKHNVITNGLIT 176 (395)
Q Consensus 109 ~I~~~~l~~~~~----~~~~~~~~~~~~gl~~d~~--~~~lywsd~~~~~I~~~~~dg~~~~------~~~~i~~~~~~~ 176 (395)
.|++.++..... ...+......+.+++|.+. ++.| .+...++.|..++++..... ............
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l-~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (351)
T 3f3f_A 34 HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRII-ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGS 112 (351)
T ss_dssp EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEE-EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSC
T ss_pred eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEE-EEEcCCCeEEEEecCCCcccccccCcceeeeecccCCc
Confidence 677888765221 1223346677899999984 4544 45557889999998764210 112222334456
Q ss_pred cceEEEecCC-CeEEEEeCCCCeEEEEECCCCceEEE------Ee-------cCCCCceeEEEeCC---CCeEEEEeeCC
Q psy13629 177 PDGLAIDWLT-EKLYWTDSETNKLEVSSLDGKKRKVL------YW-------EDIDQPRAIALVPQ---DSIMFWTDWGE 239 (395)
Q Consensus 177 p~glAVD~~~-~~LYwtd~~~~~I~v~~ldg~~~~~l------~~-------~~~~~P~~iavdp~---~g~LYwtd~~~ 239 (395)
+.++++.+.. +.+.++-...+.|.+.++........ .. ........++++|. ...|..+. .
T Consensus 113 v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~- 190 (351)
T 3f3f_A 113 LYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-L- 190 (351)
T ss_dssp EEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-T-
T ss_pred eeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec-C-
Confidence 7889988762 44444555678999999865432110 00 23455678888886 55555544 2
Q ss_pred CCeEEEEecCCCCcce--EEEEecCCcCceeEEEecccc---EEEEeccceeeeeeecccc
Q psy13629 240 VPKIERGAMNGDPRHR--KVIVDSTIFWPNGIAIDFNNR---LLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 240 ~~~I~~~~~dG~~~~~--~~lv~~~~~~P~glalD~~~~---rLYwaD~~~~~I~~~~~dG 295 (395)
...+....... ... ...+..+-...+.+++.+.+. +++.+-..++.|..-+++.
T Consensus 191 ~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 191 EQAIIYQRGKD--GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp TEEEEEEECTT--SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred CCcEEEEccCC--CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 22332222222 121 112222344567888886652 4555544556666666554
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=95.61 E-value=1.2 Score=40.06 Aligned_cols=123 Identities=6% Similarity=-0.054 Sum_probs=80.1
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCC-ceEEEEeCCCCCcceEEEecC-CCeEEEEeCCCCeEEEE
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG-SKHNVITNGLITPDGLAIDWL-TEKLYWTDSETNKLEVS 202 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~-~~~~i~~~~~~~p~glAVD~~-~~~LYwtd~~~~~I~v~ 202 (395)
......+..++|++.++.|.... .++.|..++++..... .....+......+..+++.+. ++.+.++-...+.|.+.
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCS-SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEE-TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred cccccceeEEEEcCCCCEEEEee-CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 34456789999999887766554 7889999998854211 112222334456778888764 25555666667899999
Q ss_pred ECCCCc---------eEEEEecCCCCceeEEEeCC--CCeEEEEeeCCCCeEEEEecCC
Q psy13629 203 SLDGKK---------RKVLYWEDIDQPRAIALVPQ--DSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 203 ~ldg~~---------~~~l~~~~~~~P~~iavdp~--~g~LYwtd~~~~~~I~~~~~dG 250 (395)
+++... ....+........+++++|. ..+|+.+. ....|...++..
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~ 143 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG--NDGILRLYDALE 143 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTCEEEEEECSS
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec--CCCcEEEecCCC
Confidence 988752 22333344567899999998 65665544 245677777654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.56 E-value=1.7 Score=41.35 Aligned_cols=158 Identities=10% Similarity=0.078 Sum_probs=95.5
Q ss_pred CCeEEEEEEcCC--CEEEEEECCCCeEEEEEccCCCCC-------------------------------------ceEEE
Q psy13629 129 EEGAAIDYYYKK--SMVCWTDHGTEMISCCTFDGNNVG-------------------------------------SKHNV 169 (395)
Q Consensus 129 ~~~~gl~~d~~~--~~lywsd~~~~~I~~~~~dg~~~~-------------------------------------~~~~i 169 (395)
..+.+++|.+.+ ..|..+ ..++.|..++++..... .....
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLS-TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEE-ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred CceEEEEEcCCCCcceEEEe-CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 668899999987 455544 57888888777642100 00011
Q ss_pred EeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC-CceEEEE-------ecCCCCceeEEEeCCC-CeEEEEeeCCC
Q psy13629 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG-KKRKVLY-------WEDIDQPRAIALVPQD-SIMFWTDWGEV 240 (395)
Q Consensus 170 ~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg-~~~~~l~-------~~~~~~P~~iavdp~~-g~LYwtd~~~~ 240 (395)
.......+..+++.+.+..| .+- ..+.|.+.++.. .....++ .........++++|.. ..|+... ..
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~d 248 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETY-LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SK 248 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEE-EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TT
T ss_pred ccCCCcceEEEEEcCCCCEE-EEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe--CC
Confidence 12334567889999855544 454 689999999983 3332222 1234568899999987 4555443 24
Q ss_pred CeEEEEecCCCCcce----EEEEecCCc------------CceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 241 PKIERGAMNGDPRHR----KVIVDSTIF------------WPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 241 ~~I~~~~~dG~~~~~----~~lv~~~~~------------~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
..|...++... .. ...+..+.. ....+++++.+..|..+.. +.|...++..
T Consensus 249 g~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~ 315 (447)
T 3dw8_B 249 GTIRLCDMRAS--ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNM 315 (447)
T ss_dssp SCEEEEETTTC--SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTC
T ss_pred CeEEEEECcCC--ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCC
Confidence 56777777652 21 122333222 5778899887777766654 6777766653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.061 Score=55.92 Aligned_cols=121 Identities=11% Similarity=0.103 Sum_probs=80.6
Q ss_pred EEEEeeCCCCCccEEecCCCC----CeEEEEEEcCCCEEEEEECC--------CCeEEEEEccCCCCCceEEEEeCCCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLE----EGAAIDYYYKKSMVCWTDHG--------TEMISCCTFDGNNVGSKHNVITNGLIT 176 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~----~~~gl~~d~~~~~lywsd~~--------~~~I~~~~~dg~~~~~~~~i~~~~~~~ 176 (395)
+|+++++.+ .....+..... ....++|+++++.|.++... .+.|+..++++........+ ...
T Consensus 37 ~i~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~~~ 111 (719)
T 1z68_A 37 NIVLYNIET-GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL----PRP 111 (719)
T ss_dssp CEEEEESSS-CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC----CSS
T ss_pred CEEEEEcCC-CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec----Ccc
Confidence 678888877 34334433221 36789999999988876531 46899999987521000111 135
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCC------------------CCceeEEEeCCCCeEEEEe
Q psy13629 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI------------------DQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 177 p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~------------------~~P~~iavdp~~g~LYwtd 236 (395)
...+++.+.++.|.++. .+.|.+.++++.....+..... ....+++.+|++++|+++.
T Consensus 112 ~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 112 IQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp BCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred cccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence 67899999898888875 4689999998776655432221 2235899999998887764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.38 Score=50.63 Aligned_cols=166 Identities=8% Similarity=0.035 Sum_probs=100.8
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC-CeEEEEeCCCCeEEEEEC
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT-EKLYWTDSETNKLEVSSL 204 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~-~~LYwtd~~~~~I~v~~l 204 (395)
...+.+.+++|++.++.|+.+. .++.|..+++++... ..............++++.+.. +++..+-...+.|.+.++
T Consensus 7 gH~~~V~~l~~s~dg~~latg~-~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCS-SDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEE-TTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEE-CCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 3456788999999887666554 788999998875311 1122223334556778876642 455556667889999999
Q ss_pred CCCce--EEEEecCCCCceeEEEeCC--CCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEecc------
Q psy13629 205 DGKKR--KVLYWEDIDQPRAIALVPQ--DSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFN------ 274 (395)
Q Consensus 205 dg~~~--~~l~~~~~~~P~~iavdp~--~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~------ 274 (395)
++... .............++++|. ...++.+. ....|...++.............+......+++++.
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe--CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 88653 2233234567889999998 55555544 356777777765212233334444455677777763
Q ss_pred ------ccEEEEeccceeeeeeecccc
Q psy13629 275 ------NRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 275 ------~~rLYwaD~~~~~I~~~~~dG 295 (395)
++.+..+-..++.|...++..
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~ 189 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNS 189 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEET
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccC
Confidence 233444444456666655543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.48 E-value=1.5 Score=40.15 Aligned_cols=93 Identities=10% Similarity=-0.066 Sum_probs=61.4
Q ss_pred EEEEeeCCC-CCcc-EEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEE--ec
Q psy13629 109 DIRIANLSR-PLKP-VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAI--DW 184 (395)
Q Consensus 109 ~I~~~~l~~-~~~~-~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAV--D~ 184 (395)
.|++.++.. .... ..+......+.+++|++.++.|+... .++.|..++++.. .... .........++++ ++
T Consensus 65 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~---~~~~-~~~~~~~v~~~~~~~~~ 139 (368)
T 3mmy_A 65 DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS-CDKTAKMWDLSSN---QAIQ-IAQHDAPVKTIHWIKAP 139 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTT---EEEE-EEECSSCEEEEEEEECS
T ss_pred cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc-CCCcEEEEEcCCC---Ccee-eccccCceEEEEEEeCC
Confidence 678888775 2333 34455677899999999888777554 7889999999875 2222 2333456677777 54
Q ss_pred CCCeEEEEeCCCCeEEEEECCCC
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGK 207 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~ 207 (395)
.++++++-...+.|.+.++...
T Consensus 140 -~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 140 -NYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp -SCEEEEEEETTSEEEEECSSCS
T ss_pred -CCCEEEEccCCCcEEEEECCCC
Confidence 4454555555677888777543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.65 Score=44.38 Aligned_cols=166 Identities=5% Similarity=0.028 Sum_probs=96.0
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC------Cc--eEEEEeCCC------------CCcceEEEecC
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV------GS--KHNVITNGL------------ITPDGLAIDWL 185 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~------~~--~~~i~~~~~------------~~p~glAVD~~ 185 (395)
+....+.+++|++.++.|.... .++.|..++++.... .. ....+.... ..+..++..+.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGD-KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEE-TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEc-CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 3456789999999888776554 788999998875420 00 122222322 55788888876
Q ss_pred CC-eEEEEeCCCCeEEEEECCCCceE----------------------------------------EEEecCCCCceeEE
Q psy13629 186 TE-KLYWTDSETNKLEVSSLDGKKRK----------------------------------------VLYWEDIDQPRAIA 224 (395)
Q Consensus 186 ~~-~LYwtd~~~~~I~v~~ldg~~~~----------------------------------------~l~~~~~~~P~~ia 224 (395)
++ ..+.+-...+.|.+.+++..... .+..........++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 52 34455566788888887653221 11122345678999
Q ss_pred EeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEE------EecCCcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 225 LVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVI------VDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 225 vdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~l------v~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
++|...+|.-+ . ...|...+++.......++ ...+-.....+++++.+.+++.+-...+.|...++..
T Consensus 185 ~~~~~~~l~s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 185 INSDYETYLSA--D-DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp ECTTSSEEEEE--C-SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred EcCCCCEEEEe--C-CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 99976655543 2 6778888887300111111 1233445777888876623344433445565555443
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.58 Score=44.40 Aligned_cols=184 Identities=9% Similarity=-0.074 Sum_probs=111.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC----CceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV----GSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~----~~~~~i~~~~~~~p~glAVD~ 184 (395)
.|++.++........+......+..++|++.++.|. +...++.|..+++..... ......+.........++..+
T Consensus 89 ~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~la-s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~ 167 (380)
T 3iz6_a 89 RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA-CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP 167 (380)
T ss_dssp EEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEE-ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS
T ss_pred eEEEEECCCCccceEEecCCCCEEEEEECCCCCEEE-EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEec
Confidence 688888766344444455566788899999887765 444677888888753210 000111122223345555555
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEec-----CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEE
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-----DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIV 259 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~-----~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv 259 (395)
..+....+-...+.|.+.++....+...+.. .......+++++.++.++.+- +....|...++........ .+
T Consensus 168 ~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg-s~D~~v~~wd~~~~~~~~~-~~ 245 (380)
T 3iz6_a 168 DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG-SCDTTVRLWDLRITSRAVR-TY 245 (380)
T ss_dssp SSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE-ETTSCEEEEETTTTCCCCE-EE
T ss_pred CCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE-ECCCeEEEEECCCCCcceE-EE
Confidence 5555556777788999999987766555521 234567888888777777775 3356677777753112222 33
Q ss_pred ecCCcCceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 260 DSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 260 ~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
..+-...+.+++.+++..| .+-..++.|..-++...
T Consensus 246 ~~h~~~v~~v~~~p~~~~l-~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 246 HGHEGDINSVKFFPDGQRF-GTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp CCCSSCCCEEEECTTSSEE-EEECSSSCEEEEETTTT
T ss_pred CCcCCCeEEEEEecCCCeE-EEEcCCCeEEEEECCCC
Confidence 3445567889998766554 44445566766666543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.33 E-value=2.1 Score=41.05 Aligned_cols=173 Identities=6% Similarity=-0.005 Sum_probs=95.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.++++ .++.++.. ..++.|..+++... ............+..++.+ ++
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~-~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~- 330 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSG-SLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DN- 330 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEE-ETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TT-
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEE-eCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CC-
Confidence 5667776552223333344566778888 34555544 47888999998764 2222333333445556654 34
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEec---CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe----c
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWE---DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD----S 261 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~---~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~----~ 261 (395)
+.++-...+.|.+.++........+.. .......++++ .++|+.+. ....|...++... .....+.. .
T Consensus 331 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--~dg~v~iwd~~~~-~~~~~~~~~~~~~ 405 (445)
T 2ovr_B 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS--DDGTVKLWDLKTG-EFIRNLVTLESGG 405 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE--TTSEEEEEETTTC-CEEEEEEECTTGG
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEe--CCCeEEEEECCCC-ceeeeeeccccCC
Confidence 445555678999999976555444432 23446677776 34555443 3567888887642 22233321 2
Q ss_pred CCcCceeEEEeccccEEEEeccce---eeeeeecccc
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRL---TFIEVMDYDG 295 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~---~~I~~~~~dG 295 (395)
.......+++++.+..|..+.... .+|...+++.
T Consensus 406 ~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 406 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 234567778875554444443221 1355555554
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.21 Score=49.02 Aligned_cols=121 Identities=2% Similarity=-0.157 Sum_probs=83.1
Q ss_pred CCCeEEEEEEcCCCEEEE---EECCCCeEEEEEccCC-----CC-CceEEEE--eCCCCCcceEEEecCCCeEEEEeCCC
Q psy13629 128 LEEGAAIDYYYKKSMVCW---TDHGTEMISCCTFDGN-----NV-GSKHNVI--TNGLITPDGLAIDWLTEKLYWTDSET 196 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lyw---sd~~~~~I~~~~~dg~-----~~-~~~~~i~--~~~~~~p~glAVD~~~~~LYwtd~~~ 196 (395)
...+.+++|++.++.|+. +...++.|..++++.. .. .....+. ......+.+++..+..++++.+-...
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 346899999999999887 6656788888887532 00 0001111 11234678899988767888887788
Q ss_pred CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 197 NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 197 ~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
+.|.+.++...............+++++.+|...+|+... ....|...+++|
T Consensus 172 g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs--~dg~v~iwd~~~ 223 (434)
T 2oit_A 172 GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK--QNGTVVQYLPTL 223 (434)
T ss_dssp SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE--TTSCEEEECTTC
T ss_pred CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc--CCCcEEEEccCC
Confidence 9999999987644322223345789999999877777665 245688888876
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=95.29 E-value=1.8 Score=40.07 Aligned_cols=164 Identities=8% Similarity=-0.062 Sum_probs=95.2
Q ss_pred EEEEeeCCCCCccEEec---CCCCCeEEEEEEcCCC---------EEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCC
Q psy13629 109 DIRIANLSRPLKPVTII---KDLEEGAAIDYYYKKS---------MVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 176 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~---~~~~~~~gl~~d~~~~---------~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~ 176 (395)
.|++.++.+ ....... ........++|++... .++.+...++.|...+.++ ............
T Consensus 141 ~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~h~~~ 215 (343)
T 2xzm_R 141 EIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----QIRYTFKAHESN 215 (343)
T ss_dssp CEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----EEEEEEECCSSC
T ss_pred EEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC----ceeEEEcCcccc
Confidence 577777764 2222222 2344578888987752 3556666788998888554 223333344456
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEEC-CCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcce
Q psy13629 177 PDGLAIDWLTEKLYWTDSETNKLEVSSL-DGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHR 255 (395)
Q Consensus 177 p~glAVD~~~~~LYwtd~~~~~I~v~~l-dg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~ 255 (395)
...+++.+.++.| .+-...+.|.+.++ ........+ ........++++|...+|..+. ...|...++.......
T Consensus 216 v~~~~~s~~g~~l-~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~---d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 216 VNHLSISPNGKYI-ATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGT---DQGVKIFNLMTQSKAP 290 (343)
T ss_dssp EEEEEECTTSSEE-EEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEE---SSCEEEEESSSCCSCS
T ss_pred ceEEEECCCCCEE-EEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEEC---CCCEEEEEeCCCCCCc
Confidence 7889998855544 56667889999998 333333333 2334588999999876665443 3346666665411111
Q ss_pred EEEEe-----------cCCcCceeEEEeccccEEEEec
Q psy13629 256 KVIVD-----------STIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 256 ~~lv~-----------~~~~~P~glalD~~~~rLYwaD 282 (395)
...+. .+......+++++.+..|+.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 291 VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 11111 1122346677877777666553
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=95.28 E-value=2.2 Score=40.94 Aligned_cols=170 Identities=6% Similarity=-0.056 Sum_probs=99.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.+++++ ++ ++++...++.|...+++.. .....+.........++++ .+.
T Consensus 140 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~ 211 (445)
T 2ovr_B 140 TLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DN-IIISGSTDRTLKVWNAETG---ECIHTLYGHTSTVRCMHLH--EKR 211 (445)
T ss_dssp CEEEEETTTCCEEEECCCCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEE--TTE
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEec--CC-EEEEEeCCCeEEEEECCcC---cEEEEECCCCCcEEEEEec--CCE
Confidence 67888876633344444556678888887 34 4555558899999998865 2233333334456667765 344
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
| ++-...+.|.+.++........+.........++++ +.+|+... ....|...++.. ......+..+......
T Consensus 212 l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~--~dg~i~iwd~~~--~~~~~~~~~~~~~v~~ 284 (445)
T 2ovr_B 212 V-VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGA--YDFMVKVWDPET--ETCLHTLQGHTNRVYS 284 (445)
T ss_dssp E-EEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC--SSCEEEEE--TTSCEEEEEGGG--TEEEEEECCCSSCEEE
T ss_pred E-EEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC--CCEEEEEc--CCCEEEEEECCC--CcEeEEecCCCCceEE
Confidence 4 455567899999998766655554555666777773 45555444 245677777764 2222222223333445
Q ss_pred EEEeccccEEEEeccceeeeeeeccccc
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
+++ .+..|+.+. .++.|...++...
T Consensus 285 ~~~--~~~~l~~~~-~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 285 LQF--DGIHVVSGS-LDTSIRVWDVETG 309 (445)
T ss_dssp EEE--CSSEEEEEE-TTSCEEEEETTTC
T ss_pred EEE--CCCEEEEEe-CCCeEEEEECCCC
Confidence 555 355555444 3456666665433
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=95.28 E-value=1.7 Score=39.48 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=105.1
Q ss_pred EEEEeeCCCC-Cc-cEEecCCCCCeEEEEEEcC-CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 109 DIRIANLSRP-LK-PVTIIKDLEEGAAIDYYYK-KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~-~~-~~~~~~~~~~~~gl~~d~~-~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.|++.++.+. .. ...+......+.+++|.+. .+.++.+...+++|...+++...... .............+++.+.
T Consensus 32 ~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~-~~~~~~h~~~v~~v~~~p~ 110 (297)
T 2pm7_B 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ-IAVHAVHSASVNSVQWAPH 110 (297)
T ss_dssp CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC-CEEECCCSSCEEEEEECCG
T ss_pred EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE-EEEeecCCCceeEEEeCcC
Confidence 6788887642 12 3344455667889999754 24456666688999999987542111 1122223345677888765
Q ss_pred C-CeEEEEeCCCCeEEEEECCCCce--EEEEecCCCCceeEEEeCCC------------CeEEEEeeCCCCeEEEEecCC
Q psy13629 186 T-EKLYWTDSETNKLEVSSLDGKKR--KVLYWEDIDQPRAIALVPQD------------SIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 186 ~-~~LYwtd~~~~~I~v~~ldg~~~--~~l~~~~~~~P~~iavdp~~------------g~LYwtd~~~~~~I~~~~~dG 250 (395)
. +.+..+-...+.|.+.++..... ...+.......+.++++|.. +.++.+- +....|...+++.
T Consensus 111 ~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sg-s~D~~v~lwd~~~ 189 (297)
T 2pm7_B 111 EYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG-GADNLVKIWKYNS 189 (297)
T ss_dssp GGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEE-ETTSCEEEEEEET
T ss_pred CCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEE-cCCCcEEEEEEcC
Confidence 2 45555666778999999875421 22333444567788888862 3445554 3344566666654
Q ss_pred CCcc--eEEEEecCCcCceeEEEeccc--cEEEEeccceeeeeeeccc
Q psy13629 251 DPRH--RKVIVDSTIFWPNGIAIDFNN--RLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 251 ~~~~--~~~lv~~~~~~P~glalD~~~--~rLYwaD~~~~~I~~~~~d 294 (395)
.... ....+..+-...+.+++++.+ +++..+-..+++|..-+++
T Consensus 190 ~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred CCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 1111 111223344567788888654 3455554445555555544
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=95.27 E-value=1.7 Score=39.50 Aligned_cols=182 Identities=8% Similarity=-0.047 Sum_probs=109.5
Q ss_pred EEEEeeCCCCC-cc----EEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 109 DIRIANLSRPL-KP----VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 109 ~I~~~~l~~~~-~~----~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
.|++.++.... .. ..+......+.+++|++.++.|+... .++.|...+.... ...............+...
T Consensus 62 ~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~-~d~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 137 (340)
T 4aow_A 62 TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS-WDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFS 137 (340)
T ss_dssp CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTT---EEEEEEECCSSCEEEEEEC
T ss_pred eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc-ccccceEEeeccc---ceeeeecCCCCceeEEEEe
Confidence 57777765522 11 12233456788999999888777555 7788888888765 3333444444556666666
Q ss_pred cCCCeEEEEeCCCCeEEEEECCCCceEEEEec-CCCCceeEEEeCCCCe-EEEEeeCCCCeEEEEecCCCCcceEEEEec
Q psy13629 184 WLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-DIDQPRAIALVPQDSI-MFWTDWGEVPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 184 ~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~-~~~~P~~iavdp~~g~-LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
+.++.|+ +-...+.+.+.++.+......... .......+++.+.... ++.+- +....|...++.. .........
T Consensus 138 ~~~~~l~-s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~-~~d~~i~i~d~~~--~~~~~~~~~ 213 (340)
T 4aow_A 138 SDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC-GWDKLVKVWNLAN--CKLKTNHIG 213 (340)
T ss_dssp TTSSCEE-EEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE-ETTSCEEEEETTT--TEEEEEECC
T ss_pred ecCccce-eecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE-cCCCEEEEEECCC--CceeeEecC
Confidence 6555554 444567888888877665544322 2445667788776544 33443 3456677777765 333333333
Q ss_pred CCcCceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
+-...+.+++++++..|+.+. .++.|..-++......
T Consensus 214 h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 214 HTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLNEGKHL 250 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEE-TTCEEEEEETTTTEEE
T ss_pred CCCcEEEEEECCCCCEEEEEe-CCCeEEEEEeccCcee
Confidence 445678888987666555443 4566666666554443
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=95.27 E-value=3 Score=42.33 Aligned_cols=187 Identities=14% Similarity=0.060 Sum_probs=111.8
Q ss_pred ccCCCCcee------EEEEEeeCCCCCc-c-EEecCCCCCeEEEEEEcCCCEEEEEECCCC---eEEEEEccCCCCCceE
Q psy13629 99 KLQPDGAYL------LDIRIANLSRPLK-P-VTIIKDLEEGAAIDYYYKKSMVCWTDHGTE---MISCCTFDGNNVGSKH 167 (395)
Q Consensus 99 ~~~~~~~~~------~~I~~~~l~~~~~-~-~~~~~~~~~~~gl~~d~~~~~lywsd~~~~---~I~~~~~dg~~~~~~~ 167 (395)
..+|++.++ ..|++.++..... . ..+......+.+++|+++++.|..+..... .|+..+. +. . .
T Consensus 66 ~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~---~-~ 140 (611)
T 1nr0_A 66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GT---S-N 140 (611)
T ss_dssp EECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CC---B-C
T ss_pred EECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-CC---C-c
Confidence 445665554 2688888754222 2 223345567899999999998887764432 3444332 21 1 1
Q ss_pred EEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEe
Q psy13629 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGA 247 (395)
Q Consensus 168 ~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~ 247 (395)
..+.........+++.+.+..+..+-...+.|...+.........+...-...++++++|+..+|. +- +....|...+
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~la-s~-s~D~~i~lwd 218 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA-ST-GGDGTIVLYN 218 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE-EE-ETTSCEEEEE
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEE-EE-ECCCcEEEEE
Confidence 112233356778898886666667777788999999776555444434456789999999766554 43 2345677777
Q ss_pred cCCCCcceEEEEe------cCCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 248 MNGDPRHRKVIVD------STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 248 ~dG~~~~~~~lv~------~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+... .....+.. .+.....+++++++++.|.-+ ..++.|..-++.
T Consensus 219 ~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~-s~D~~v~lWd~~ 269 (611)
T 1nr0_A 219 GVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA-SADKTIKIWNVA 269 (611)
T ss_dssp TTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE-ETTSEEEEEETT
T ss_pred CCCC-cEeeeeccccccccccCCCEEEEEECCCCCEEEEE-eCCCeEEEEeCC
Confidence 5431 22222212 244567888898776666544 345566655554
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.09 E-value=1.6 Score=47.10 Aligned_cols=156 Identities=7% Similarity=-0.093 Sum_probs=99.6
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCC
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK 207 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~ 207 (395)
...+.+++|++.++.|.... .++.|..++.++. ........-.....|++.+ ++.|. +-...+.|.+-+++..
T Consensus 17 ~~~V~~lafspdg~~lAsgs-~Dg~I~lw~~~~~----~~~~~~~~~~~V~~l~fsp-g~~L~-S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIAT-VTGEVHIYGQQQV----EVVIKLEDRSAIKEMRFVK-GIYLV-VINAKDTVYVLSLYSQ 89 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEE-TTSEEEEECSTTC----EEEEECSSCCCEEEEEEET-TTEEE-EEETTCEEEEEETTTC
T ss_pred CCCcEEEEECCCCCEEEEEe-CCCEEEEEeCCCc----EEEEEcCCCCCEEEEEEcC-CCEEE-EEECcCeEEEEECCCC
Confidence 45689999999988766544 7789998887764 1222233344678899998 55454 4456789999999876
Q ss_pred ceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEE-E----------ecCCcCceeEEEecccc
Q psy13629 208 KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVI-V----------DSTIFWPNGIAIDFNNR 276 (395)
Q Consensus 208 ~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~l-v----------~~~~~~P~glalD~~~~ 276 (395)
.....+. .-.....++++|...+|+.... ...|...++++ .....+ + ..+......+++++.++
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~--dg~V~lwd~~~--~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQ--NGSMIVYDIDR--DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEET--TSCEEEEETTT--TEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcC--CCcEEEEECCC--CccccceeccccccccccccCCCCeEEEEEccCCC
Confidence 5544332 3356889999999998887762 45678888876 222111 1 12334567788887554
Q ss_pred EEEEeccceeeeeeeccccc
Q psy13629 277 LLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 277 rLYwaD~~~~~I~~~~~dG~ 296 (395)
.+..+-...+.| .-++...
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~ 183 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVEN 183 (902)
T ss_dssp EEEEEECSSCEE-EEETTTT
T ss_pred CEEEEEeCCCcE-EEECCCC
Confidence 444443344555 5555443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.073 Score=55.28 Aligned_cols=181 Identities=10% Similarity=-0.057 Sum_probs=103.2
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCC-------------
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL------------- 174 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~------------- 174 (395)
..|++.++++ .+.............++|+++++.|.++. ++.|+..++++.. ...+...+.
T Consensus 90 ~~i~~~d~~~-g~~~~~~~l~~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~---~~~l~~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 90 ATYYIYDLSN-GEFVRGNELPRPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDP---PFQITFNGRENKIFNGIPDWVY 163 (719)
T ss_dssp EEEEEEETTT-TEECCSSCCCSSBCCEEECSSTTCEEEEE--TTEEEEESSTTSC---CEECCCCCBTTTEEESSCCHHH
T ss_pred eEEEEEECCC-CccccceecCcccccceECCCCCEEEEEE--CCeEEEEeCCCCC---cEEEecCCCcCCeEccccccee
Confidence 4678888876 33200011224567789999999888874 5689988887652 222222221
Q ss_pred -----CCcceEEEecCCCeEEEEeCC---------------------------------CCeEEEEECCCCceE---EEE
Q psy13629 175 -----ITPDGLAIDWLTEKLYWTDSE---------------------------------TNKLEVSSLDGKKRK---VLY 213 (395)
Q Consensus 175 -----~~p~glAVD~~~~~LYwtd~~---------------------------------~~~I~v~~ldg~~~~---~l~ 213 (395)
....+++..+.++.|+++... ...|.+.++++.... .+.
T Consensus 164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence 122588999888888776421 116778888776531 111
Q ss_pred e-----cCCCCceeEEEeCCCCeEEEE--eeC-CCCeEEEEe----cCCCCcceEEEE----ecCCcCce-----eEEEe
Q psy13629 214 W-----EDIDQPRAIALVPQDSIMFWT--DWG-EVPKIERGA----MNGDPRHRKVIV----DSTIFWPN-----GIAID 272 (395)
Q Consensus 214 ~-----~~~~~P~~iavdp~~g~LYwt--d~~-~~~~I~~~~----~dG~~~~~~~lv----~~~~~~P~-----glalD 272 (395)
. ........++.+|+ +.+.++ +.. ...+|..++ .++ ...+.+. ..+-.+.. .+++.
T Consensus 244 ~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 320 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQT--WDCPKTQEHIEESRTGWAGGFFVSTPVFS 320 (719)
T ss_dssp CCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSS--EECCGGGEEEEECSSSCSSSSSCCCCEEC
T ss_pred CCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCC--CceEEEEecccccCCceEccccCCccEEC
Confidence 0 12223578899998 555544 211 124688888 554 2222222 22222333 56777
Q ss_pred ccccEEEEe---ccceeeeeeeccccce
Q psy13629 273 FNNRLLYWI---DGRLTFIEVMDYDGYV 297 (395)
Q Consensus 273 ~~~~rLYwa---D~~~~~I~~~~~dG~~ 297 (395)
+++++||+. ..+..+|...++++..
T Consensus 321 pdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 321 YDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp TTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred CCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 777777663 2334567777776644
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=94.98 E-value=2.6 Score=40.07 Aligned_cols=183 Identities=7% Similarity=-0.131 Sum_probs=103.6
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE------------------
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI------------------ 170 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~------------------ 170 (395)
.|++.|+...............+.+++|++.+..+..+...++.|...++...... ....
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~--~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSA--EENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------------CSCCCSEEEESGGG
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccc--ccccccCCcccceEEecccccc
Confidence 78888876544455566677788999999988777777778899999988754210 0000
Q ss_pred ------eCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEe------------------cCCCCceeEEEe
Q psy13629 171 ------TNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW------------------EDIDQPRAIALV 226 (395)
Q Consensus 171 ------~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~------------------~~~~~P~~iavd 226 (395)
.........++.....++...+-...++|.+.++........+. .......+....
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 01112344555554445555566667788887775433221111 112223344555
Q ss_pred CCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 227 PQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 227 p~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
|..+.+|.+--+....|...+.+.. .....+.. +-.....++++++++.|-.+. .+.+..+.+.|..
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~-~~~~~~~~-~~~~V~svafspdG~~LA~as--~~Gv~lvrL~gf~ 391 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEK-DSNSIPIQ-LGMPIVDFCWHQDGSHLAIAT--EGSVLLTRLMGFT 391 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCT-TCCEEEEE-CSSCEEEEEECTTSSEEEEEE--SSEEEEEEEGGGC
T ss_pred cCCCCEEEEEECCCCEEEEEECCCC-cEEEEecC-CCCcEEEEEEcCCCCEEEEEe--CCCeEEEEEeCcc
Confidence 5556666655345677888887652 22333332 333567899998888775553 3445555655543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.86 E-value=1.6 Score=41.62 Aligned_cols=136 Identities=9% Similarity=-0.014 Sum_probs=83.1
Q ss_pred EEEEeeCCCCCccEEecC--CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC-
Q psy13629 109 DIRIANLSRPLKPVTIIK--DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL- 185 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~--~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~- 185 (395)
.|++.++........+.. ....+.+++|++.++.|+... .++.|..+++.... ....+..........+++.+.
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 269 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGIIDIWDIRFNV--LIRSWSFGDHAPITHVEVCQFY 269 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCEEEEETTTTE--EEEEEBCTTCEEEEEEEECTTT
T ss_pred eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeEEEEEcCCcc--EEEEEecCCCCceEEEEecccc
Confidence 788888876333333333 457899999999877666554 77899999988641 112222233334566665542
Q ss_pred --CCeEEEEeCCCCeEEEEECCCCceEEEEecCC--------------------------CCceeEEEeCCCCeEEEEee
Q psy13629 186 --TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDI--------------------------DQPRAIALVPQDSIMFWTDW 237 (395)
Q Consensus 186 --~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~--------------------------~~P~~iavdp~~g~LYwtd~ 237 (395)
.+.+.++-...+.|.+.++....+...+.... .....++++ .+.+.++-
T Consensus 270 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~- 346 (437)
T 3gre_A 270 GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTD- 346 (437)
T ss_dssp CTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEE-
T ss_pred CCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEec-
Confidence 35566677778899999998655544333211 114567777 33444444
Q ss_pred CCCCeEEEEecCC
Q psy13629 238 GEVPKIERGAMNG 250 (395)
Q Consensus 238 ~~~~~I~~~~~dG 250 (395)
+....|...++..
T Consensus 347 ~~d~~i~~wd~~~ 359 (437)
T 3gre_A 347 EATSSIVMFSLNE 359 (437)
T ss_dssp GGGTEEEEEETTC
T ss_pred CCCCeEEEEECCC
Confidence 3356788888765
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=94.83 E-value=1.1 Score=46.35 Aligned_cols=178 Identities=8% Similarity=-0.026 Sum_probs=101.5
Q ss_pred EEEeeCCCCCc-cEEecCC---CCCeEEEEEEcCCCEEEEEECCC---CeEEEEEccCCCCCceEEEEeCCCCCcceEEE
Q psy13629 110 IRIANLSRPLK-PVTIIKD---LEEGAAIDYYYKKSMVCWTDHGT---EMISCCTFDGNNVGSKHNVITNGLITPDGLAI 182 (395)
Q Consensus 110 I~~~~l~~~~~-~~~~~~~---~~~~~gl~~d~~~~~lywsd~~~---~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAV 182 (395)
|.+.++.+... ...+... .....+++++++++.|+++.... ..|+..+.++. ....+... .......+
T Consensus 204 v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~---~~~~l~~~-~~~~~~~~- 278 (695)
T 2bkl_A 204 IRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK---DFRLLVKG-VGAKYEVH- 278 (695)
T ss_dssp EEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS---SCEEEEEC-SSCCEEEE-
T ss_pred EEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC---ceEEeecC-CCceEEEE-
Confidence 88888866321 2333332 23567899999999888775332 36776654433 33444433 22223332
Q ss_pred ecCCCeEEEEeC---CCCeEEEEECCCCce---EEEEecC-CCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcc
Q psy13629 183 DWLTEKLYWTDS---ETNKLEVSSLDGKKR---KVLYWED-IDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRH 254 (395)
Q Consensus 183 D~~~~~LYwtd~---~~~~I~v~~ldg~~~---~~l~~~~-~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~ 254 (395)
.+.++ +|+... .+.+|.+.++++... +.++... .....+++++ ++.|+++... ...+|...+++| ..
T Consensus 279 ~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g--~~ 353 (695)
T 2bkl_A 279 AWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKG--KP 353 (695)
T ss_dssp EETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTC--CE
T ss_pred ecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCC--Ce
Confidence 24455 777653 368999999987542 5666433 3345677776 6677776532 457888888887 33
Q ss_pred eEEEEecCCcCceeEEEeccccEEEEec---cceeeeeeeccccce
Q psy13629 255 RKVIVDSTIFWPNGIAIDFNNRLLYWID---GRLTFIEVMDYDGYV 297 (395)
Q Consensus 255 ~~~lv~~~~~~P~glalD~~~~rLYwaD---~~~~~I~~~~~dG~~ 297 (395)
.+.+.........+++.+.+++.|+++- .....|...++++..
T Consensus 354 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 354 VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3333222222334455555566666543 234667777776544
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=2.9 Score=40.09 Aligned_cols=170 Identities=9% Similarity=-0.005 Sum_probs=97.6
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.++++ .++ +.++...++.|...+++.. .....+.........+++ ..+
T Consensus 154 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~--~~~- 224 (435)
T 1p22_A 154 TIKIWDKNTLECKRILTGHTGSVLCLQY--DER-VIITGSSDSTVRVWDVNTG---EMLNTLIHHCEAVLHLRF--NNG- 224 (435)
T ss_dssp CEEEEESSSCCEEEEECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEESSSC---CEEEEECCCCSCEEEEEC--CTT-
T ss_pred eEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCC-EEEEEcCCCeEEEEECCCC---cEEEEEcCCCCcEEEEEE--cCC-
Confidence 6788887663334444445667788877 344 4455558899999998865 222233333334455554 344
Q ss_pred EEEEeCCCCeEEEEECCCCceE---EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcC
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRK---VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFW 265 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~---~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~ 265 (395)
..++-...+.|.+.++...... ............++++ ..+|+.+. ....|...++.. ......+..+...
T Consensus 225 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--~dg~i~vwd~~~--~~~~~~~~~~~~~ 298 (435)
T 1p22_A 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS--GDRTIKVWNTST--CEFVRTLNGHKRG 298 (435)
T ss_dssp EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE--TTSEEEEEETTT--CCEEEEEECCSSC
T ss_pred EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CCEEEEEe--CCCeEEEEECCc--CcEEEEEcCCCCc
Confidence 4455556789999998865543 2232334456667664 55666554 356788888765 2332233334344
Q ss_pred ceeEEEeccccEEEEeccceeeeeeeccccc
Q psy13629 266 PNGIAIDFNNRLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 266 P~glalD~~~~rLYwaD~~~~~I~~~~~dG~ 296 (395)
...++.+ ++.|+ +-..++.|...++...
T Consensus 299 v~~~~~~--~~~l~-~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 299 IACLQYR--DRLVV-SGSSDNTIRLWDIECG 326 (435)
T ss_dssp EEEEEEE--TTEEE-EEETTSCEEEEETTTC
T ss_pred EEEEEeC--CCEEE-EEeCCCeEEEEECCCC
Confidence 5555554 44444 4334566777776543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=3.2 Score=39.75 Aligned_cols=171 Identities=11% Similarity=0.003 Sum_probs=99.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++........+......+.+++++ .+ .+++...++.|...+++....................++.| ++.
T Consensus 194 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 268 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKY 268 (435)
T ss_dssp CEEEEESSSCCEEEEECCCCSCEEEEECC--TT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTE
T ss_pred eEEEEECCCCcEEEEEcCCCCcEEEEEEc--CC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CCE
Confidence 67888887644444445556678888886 34 44555578899999988653211113333333455566653 455
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
|+ +-...+.|.+.++........+.........++.+ +++|+... ....|...++.. ......+..+......
T Consensus 269 l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~--~dg~i~iwd~~~--~~~~~~~~~h~~~v~~ 341 (435)
T 1p22_A 269 IV-SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS--SDNTIRLWDIEC--GACLRVLEGHEELVRC 341 (435)
T ss_dssp EE-EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE--TTSCEEEEETTT--CCEEEEECCCSSCEEE
T ss_pred EE-EEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe--CCCeEEEEECCC--CCEEEEEeCCcCcEEE
Confidence 54 54567899999998776655554455566777775 44554443 346688888764 2222233334344555
Q ss_pred EEEeccccEEEEeccceeeeeeeccc
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
+++| ++.|..+. .++.|...++.
T Consensus 342 ~~~~--~~~l~sg~-~dg~i~vwd~~ 364 (435)
T 1p22_A 342 IRFD--NKRIVSGA-YDGKIKVWDLV 364 (435)
T ss_dssp EECC--SSEEEEEE-TTSCEEEEEHH
T ss_pred EEec--CCEEEEEe-CCCcEEEEECC
Confidence 5553 55544443 34556555543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.66 E-value=1.7 Score=40.20 Aligned_cols=118 Identities=4% Similarity=-0.111 Sum_probs=75.1
Q ss_pred CCcceEEEec-CCCeEEEEeCCCCeEEEEECCCCceEEEEec-CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCC
Q psy13629 175 ITPDGLAIDW-LTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDP 252 (395)
Q Consensus 175 ~~p~glAVD~-~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~-~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~ 252 (395)
.....+++++ ..++++.+-...+.|.+.++.......+... .......++++|...+|.... ....|...++...
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~--~dg~i~iwd~~~~- 202 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS--PDGILDVYNLSSP- 202 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC--TTSCEEEEESSCT-
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc--CCCEEEEEECCCC-
Confidence 4567788877 1344555566788999999987776544422 233578999999766555433 3567888888752
Q ss_pred cce-EEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 253 RHR-KVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 253 ~~~-~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
... ..+-..+....+.+++.+.+..|..+.. +.|..-++....
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~--~~v~iwd~~~~~ 246 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVECD--QTVVCFDLRKDV 246 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEES--SBEEEEETTSST
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEeC--CeEEEEEcCCCC
Confidence 222 2332225567888999987777777763 367766665443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.64 E-value=3.8 Score=44.04 Aligned_cols=172 Identities=9% Similarity=-0.035 Sum_probs=104.9
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.+..+ ............+.+++|++ ++.|. +-..++.|...+++... ....+ . .......+++++.++.
T Consensus 40 ~I~lw~~~~-~~~~~~~~~~~~V~~l~fsp-g~~L~-S~s~D~~v~lWd~~~~~--~~~~~-~-~~~~V~~v~~sp~g~~ 112 (902)
T 2oaj_A 40 EVHIYGQQQ-VEVVIKLEDRSAIKEMRFVK-GIYLV-VINAKDTVYVLSLYSQK--VLTTV-F-VPGKITSIDTDASLDW 112 (902)
T ss_dssp EEEEECSTT-CEEEEECSSCCCEEEEEEET-TTEEE-EEETTCEEEEEETTTCS--EEEEE-E-CSSCEEEEECCTTCSE
T ss_pred EEEEEeCCC-cEEEEEcCCCCCEEEEEEcC-CCEEE-EEECcCeEEEEECCCCc--EEEEE-c-CCCCEEEEEECCCCCE
Confidence 677777765 33334444556789999999 66454 44478999999998652 22223 2 2346788999987777
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEe-----------cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEE
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYW-----------EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKV 257 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~-----------~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~ 257 (395)
|+... ..+.|.+.++++........ .......+|+++|.++.+..+- .....| ..++.. .....
T Consensus 113 l~sgs-~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g-~~dg~v-lWd~~~--~~~~~ 187 (902)
T 2oaj_A 113 MLIGL-QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS-YEYVTL-TYSLVE--NEIKQ 187 (902)
T ss_dssp EEEEE-TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE-CSSCEE-EEETTT--TEEEE
T ss_pred EEEEc-CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE-eCCCcE-EEECCC--CceEE
Confidence 77655 57889999998776532211 1234678999999754444443 234567 777765 22211
Q ss_pred EEecC------------------CcCceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 258 IVDST------------------IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 258 lv~~~------------------~~~P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
.+..+ ....+.+++.+++..|..+ ..++.|..-+.
T Consensus 188 ~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg-s~Dg~i~lWd~ 240 (902)
T 2oaj_A 188 SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI-HEDNSLVFWDA 240 (902)
T ss_dssp EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE-ETTCCEEEEET
T ss_pred EEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE-ECCCeEEEEEC
Confidence 12111 1346778887665544433 34455655554
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=94.56 E-value=2.6 Score=38.16 Aligned_cols=163 Identities=9% Similarity=-0.020 Sum_probs=97.3
Q ss_pred EEEEeeCCCCCccEEec-CCCCCeEEEEEEcCC-CEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTII-KDLEEGAAIDYYYKK-SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~-~~~~~~~gl~~d~~~-~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.+++.++.......... ........++|.+.. +.++.+...++.|...++... ...............|++++.+
T Consensus 151 ~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~ 227 (340)
T 4aow_A 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---KLKTNHIGHTGYLNTVTVSPDG 227 (340)
T ss_dssp CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTS
T ss_pred eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---ceeeEecCCCCcEEEEEECCCC
Confidence 45666665522222222 234556777887654 345566667788998888865 2333333344567889999855
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe------
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD------ 260 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~------ 260 (395)
+ +.++-...+.|.+.++........+ ........++++|.+..+.-+. ...|...++++ ........
T Consensus 228 ~-~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~---d~~i~iwd~~~--~~~~~~~~~~~~~~ 300 (340)
T 4aow_A 228 S-LCASGGKDGQAMLWDLNEGKHLYTL-DGGDIINALCFSPNRYWLCAAT---GPSIKIWDLEG--KIIVDELKQEVIST 300 (340)
T ss_dssp S-EEEEEETTCEEEEEETTTTEEEEEE-ECSSCEEEEEECSSSSEEEEEE---TTEEEEEETTT--TEEEEEECCC----
T ss_pred C-EEEEEeCCCeEEEEEeccCceeeee-cCCceEEeeecCCCCceeeccC---CCEEEEEECCC--CeEEEeccccceee
Confidence 4 4456566789999999887766555 3445678888888654443333 46677777776 22111111
Q ss_pred ---cCCcCceeEEEeccccEEEEe
Q psy13629 261 ---STIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 261 ---~~~~~P~glalD~~~~rLYwa 281 (395)
.+....+.++++++++.|+.+
T Consensus 301 ~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 301 SSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEE
T ss_pred eccCCCCCEEEEEECCCCCEEEEE
Confidence 122345667777666655543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.55 E-value=2.8 Score=38.58 Aligned_cols=181 Identities=9% Similarity=0.004 Sum_probs=96.1
Q ss_pred EEEEeeCCCCC-ccEE-e-cC-CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC----CceEEEEeCCCCCcceE
Q psy13629 109 DIRIANLSRPL-KPVT-I-IK-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV----GSKHNVITNGLITPDGL 180 (395)
Q Consensus 109 ~I~~~~l~~~~-~~~~-~-~~-~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~----~~~~~i~~~~~~~p~gl 180 (395)
.|++.++.... .... + .. ....+.+++|++.++.|. +...++.|...+++.... ......+........++
T Consensus 35 ~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v 113 (330)
T 2hes_X 35 KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA-AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113 (330)
T ss_dssp CEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE-EEETTSCEEEEEC-------CCCEEEEEEC----CEEEE
T ss_pred EEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE-EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEE
Confidence 56777775421 2222 2 22 455688999999877665 444778888888753210 01122233334567889
Q ss_pred EEecCCCeEEEEeCCCCeEEEEECCCC----ceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceE
Q psy13629 181 AIDWLTEKLYWTDSETNKLEVSSLDGK----KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRK 256 (395)
Q Consensus 181 AVD~~~~~LYwtd~~~~~I~v~~ldg~----~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~ 256 (395)
++.+.++.| .+-...+.|.+.+++.. .....+.........++++|...+|.-+.+ ...|...+.........
T Consensus 114 ~~sp~g~~l-as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~--D~~i~iW~~~~~~~~~~ 190 (330)
T 2hes_X 114 AWSNDGYYL-ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY--DDTVRIWKDYDDDWECV 190 (330)
T ss_dssp EECTTSCEE-EEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET--TSCEEEEEEETTEEEEE
T ss_pred EECCCCCEE-EEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC--CCeEEEEECCCCCeeEE
Confidence 998855544 45556789999998422 122233234556889999997766654442 34455555443101122
Q ss_pred EEEecCCcCceeEEEeccc-cEEEEeccceeeeeeecc
Q psy13629 257 VIVDSTIFWPNGIAIDFNN-RLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 257 ~lv~~~~~~P~glalD~~~-~rLYwaD~~~~~I~~~~~ 293 (395)
..+..+......+++++.+ +.+..+-..++.|..-++
T Consensus 191 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 191 AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 2233344456677777653 223333333444544444
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.48 Score=48.60 Aligned_cols=111 Identities=15% Similarity=0.091 Sum_probs=75.8
Q ss_pred CCCCeEEEEEEcCCCEEEEEECC---------------------CCeEEEEEccCCCCC----ceEEEEe----------
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHG---------------------TEMISCCTFDGNNVG----SKHNVIT---------- 171 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~---------------------~~~I~~~~~dg~~~~----~~~~i~~---------- 171 (395)
.+.++.++.+++.++.||++-.+ .+.|+++..++.... ..+.++.
T Consensus 382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~ 461 (592)
T 3zwu_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence 46689999999999999998432 257999987643211 1122221
Q ss_pred -----------CCCCCcceEEEecCCCeEEEEe-C-----------CCCeEEEEECCCCceEE-EEecCCCCceeEEEeC
Q psy13629 172 -----------NGLITPDGLAIDWLTEKLYWTD-S-----------ETNKLEVSSLDGKKRKV-LYWEDIDQPRAIALVP 227 (395)
Q Consensus 172 -----------~~~~~p~glAVD~~~~~LYwtd-~-----------~~~~I~v~~ldg~~~~~-l~~~~~~~P~~iavdp 227 (395)
..+..|.+|++|+. ++|+++. . .++.+.+++.+...... +......+..|++++|
T Consensus 462 ~~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp 540 (592)
T 3zwu_A 462 PKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred ccccccccCCCCCccCCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC
Confidence 13578999999985 5566654 3 24678888876444444 4334567889999999
Q ss_pred CCCeEEEEeeC
Q psy13629 228 QDSIMFWTDWG 238 (395)
Q Consensus 228 ~~g~LYwtd~~ 238 (395)
+.+.||++-..
T Consensus 541 Dg~tlfvniQH 551 (592)
T 3zwu_A 541 DQKTLFVGIQH 551 (592)
T ss_dssp TSSEEEEEEES
T ss_pred CCCEEEEEEEC
Confidence 99999987643
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.18 E-value=1.7 Score=45.64 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=95.2
Q ss_pred EEEEeeCCCC-CccEEecCCCCCeEEEEEEcCCCEEEEEECCC----CeEEEEEccCCCCCceEEEEeC-CCCCcceEEE
Q psy13629 109 DIRIANLSRP-LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT----EMISCCTFDGNNVGSKHNVITN-GLITPDGLAI 182 (395)
Q Consensus 109 ~I~~~~l~~~-~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~----~~I~~~~~dg~~~~~~~~i~~~-~~~~p~glAV 182 (395)
.|+++++++. .......+ ....+++|+++++.||++.... ..|++..+++... ....+... .-..-.++++
T Consensus 202 ~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~ 278 (751)
T 2xe4_A 202 TIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQS-EDVCLYEEHNPLFSAFMYK 278 (751)
T ss_dssp EEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGG-GCEEEEECCCTTCEEEEEE
T ss_pred EEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCch-hcEEEEecCCCceEEEEEE
Confidence 5888898874 31111011 1134678999998998886432 3789999876421 11223222 1122346677
Q ss_pred ecCCCeEEEEeC--CCCeEEEEECCCCc--e--EEEEecCCCCceeEEEe-CCCCeEEEE-eeC--CCCeEEEEecCCCC
Q psy13629 183 DWLTEKLYWTDS--ETNKLEVSSLDGKK--R--KVLYWEDIDQPRAIALV-PQDSIMFWT-DWG--EVPKIERGAMNGDP 252 (395)
Q Consensus 183 D~~~~~LYwtd~--~~~~I~v~~ldg~~--~--~~l~~~~~~~P~~iavd-p~~g~LYwt-d~~--~~~~I~~~~~dG~~ 252 (395)
.+.++.|+|+.. ....|+++++++.. . +.+. .....+. ..++ ..++.|||. +.. ...+|+++++++.
T Consensus 279 SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~-~~~~~~~-~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~- 355 (751)
T 2xe4_A 279 AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR-PREKGVR-YDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP- 355 (751)
T ss_dssp CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS-CCCTTCC-EEEEEETTTEEEEEECTTTCTTCEEEEEETTST-
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee-cCCCCce-EEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCc-
Confidence 787888888763 35679999998752 2 3333 2222221 1233 236666665 432 3578999998741
Q ss_pred cceEE-EEecCC-cCceeEEEeccccEEEEecc--ceeeeeeecc
Q psy13629 253 RHRKV-IVDSTI-FWPNGIAIDFNNRLLYWIDG--RLTFIEVMDY 293 (395)
Q Consensus 253 ~~~~~-lv~~~~-~~P~glalD~~~~rLYwaD~--~~~~I~~~~~ 293 (395)
...+. ++.... ....++.+ .++.||++-. ....|..+++
T Consensus 356 ~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 356 SDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEEC
T ss_pred ccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEec
Confidence 12222 333321 12233444 3667776632 3345666664
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.06 E-value=3.6 Score=37.86 Aligned_cols=158 Identities=8% Similarity=-0.052 Sum_probs=88.4
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEE-eC-CCCCcceEEEecCCCeEEEEeCCCCeEEEEEC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVI-TN-GLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 204 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~-~~-~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~l 204 (395)
....+.+++|++. +..+...++.|...+++.... .....+ .. .......+++.+.++ +..+-...+.|.+.++
T Consensus 13 h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 13 YKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDF-TLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAK 87 (330)
T ss_dssp CSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCC-EEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEEEEC
T ss_pred CCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCe-EEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEEEEc
Confidence 4456788999865 666666888999998875321 111222 22 234578899988554 4456556788999888
Q ss_pred CCCc-------eEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcc-e-EEEEecCCcCceeEEEeccc
Q psy13629 205 DGKK-------RKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH-R-KVIVDSTIFWPNGIAIDFNN 275 (395)
Q Consensus 205 dg~~-------~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~-~-~~lv~~~~~~P~glalD~~~ 275 (395)
.... ....+.......++++++|...+|.-+. ....|...+++..... . ...+..+....+.+++.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s--~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS--RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECTTSCEEEEEE--TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe--CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC
Confidence 5321 1222323345688999999776665443 2455666666321011 1 12233444567778887666
Q ss_pred cEEEEeccceeeeeeec
Q psy13629 276 RLLYWIDGRLTFIEVMD 292 (395)
Q Consensus 276 ~rLYwaD~~~~~I~~~~ 292 (395)
..|.-+ ..++.|..-+
T Consensus 166 ~~l~s~-s~D~~i~iW~ 181 (330)
T 2hes_X 166 ALLASS-SYDDTVRIWK 181 (330)
T ss_dssp SEEEEE-ETTSCEEEEE
T ss_pred CEEEEE-cCCCeEEEEE
Confidence 554443 3344454443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=93.69 E-value=3.9 Score=36.94 Aligned_cols=171 Identities=9% Similarity=0.009 Sum_probs=96.7
Q ss_pred EEEEeeCCCCC--ccEEecCCCCCeEEEEEEcCC-CEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 109 DIRIANLSRPL--KPVTIIKDLEEGAAIDYYYKK-SMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~~--~~~~~~~~~~~~~gl~~d~~~-~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.|++.++.... ...........+..++|++.. +.++.+...++.|...+++.... ...............+++.+.
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~-~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC-BCCEEEECCSSCEEEEEECCC
T ss_pred EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc-eeeeeeecccCccceEeecCC
Confidence 67777776521 222333455678899999862 33444555788999998875421 112233333345666777654
Q ss_pred C------------CeEEEEeCCCCeEEEEECCCCc----eEEEEecCCCCceeEEEeCCC--CeEEEEeeCCCCeEEEEe
Q psy13629 186 T------------EKLYWTDSETNKLEVSSLDGKK----RKVLYWEDIDQPRAIALVPQD--SIMFWTDWGEVPKIERGA 247 (395)
Q Consensus 186 ~------------~~LYwtd~~~~~I~v~~ldg~~----~~~l~~~~~~~P~~iavdp~~--g~LYwtd~~~~~~I~~~~ 247 (395)
. ++++.+-...+.|.+.+++... ....+...-...++++++|.. +.++.+- +....|...+
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~-s~D~~v~iWd 235 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV-SQDRTCIIWT 235 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE-ETTSCEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE-ECCCcEEEEE
Confidence 2 3566677778889988887543 222222334568999999974 4555554 3345566666
Q ss_pred cCCCCc-ceEEEE--ecCCcCceeEEEeccccEEEEe
Q psy13629 248 MNGDPR-HRKVIV--DSTIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 248 ~dG~~~-~~~~lv--~~~~~~P~glalD~~~~rLYwa 281 (395)
++.... ....+. ...-.....+++++++..|..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~ 272 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEE
Confidence 654111 122222 1222345567777666655444
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.11 E-value=3.2 Score=43.55 Aligned_cols=158 Identities=8% Similarity=0.027 Sum_probs=92.1
Q ss_pred CeEEEEEE-cCCCEEEEEECCC----CeEEEEEccCC-CCCceEEEEeCCCCCcceEEEecCCCeEEEEeCC----CCeE
Q psy13629 130 EGAAIDYY-YKKSMVCWTDHGT----EMISCCTFDGN-NVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE----TNKL 199 (395)
Q Consensus 130 ~~~gl~~d-~~~~~lywsd~~~----~~I~~~~~dg~-~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~----~~~I 199 (395)
...+..++ +++++|.|+.... ..|++.++++. .... ..+ .. ...+++..+.++.||++... ..+|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~-~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKV-SG---TNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCE-EE---ECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccc-cC---ceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 35678899 9998887775433 25999999875 3110 111 11 13466777777788887532 1479
Q ss_pred EEEECCCCce--EEEEecC-CCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcce--EEEEecCCcCceeEEEe-
Q psy13629 200 EVSSLDGKKR--KVLYWED-IDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHR--KVIVDSTIFWPNGIAID- 272 (395)
Q Consensus 200 ~v~~ldg~~~--~~l~~~~-~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~--~~lv~~~~~~P~glalD- 272 (395)
++.++++... +.+.... ...-.++.++|++++|+|+.+. ....|+.+++++..... +.+.... ..+ -..+|
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~-~~s~~~ 327 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGV-RYDVQM 327 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC-TTC-CEEEEE
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC-CCc-eEEEee
Confidence 9999987642 2333221 2234567899999999998865 46789999998631122 3333322 111 12233
Q ss_pred ccccEEEEec----cceeeeeeeccc
Q psy13629 273 FNNRLLYWID----GRLTFIEVMDYD 294 (395)
Q Consensus 273 ~~~~rLYwaD----~~~~~I~~~~~d 294 (395)
..+++|||.- +...+|..++++
T Consensus 328 ~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 328 HGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp ETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred eeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 3466666652 233466666665
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=93.04 E-value=1.1 Score=43.80 Aligned_cols=161 Identities=7% Similarity=-0.118 Sum_probs=95.3
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCC--------CCCceE----EEEeCCCCCcceEEEecCCCeEEE---Ee
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGN--------NVGSKH----NVITNGLITPDGLAIDWLTEKLYW---TD 193 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~--------~~~~~~----~i~~~~~~~p~glAVD~~~~~LYw---td 193 (395)
.....|++.+.++.|+..... .|..+..+.. ...... .........+..+++++.++.|++ +.
T Consensus 37 ~~~n~lavs~~~~~l~~~~~d--gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGAS--GLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETT--EEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCC--EEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 346778899999988887643 2554443210 000000 011112235789999998888876 55
Q ss_pred CCCCeEEEEECCCC-----ce------EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC
Q psy13629 194 SETNKLEVSSLDGK-----KR------KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 194 ~~~~~I~v~~ldg~-----~~------~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
...+.|.+.++... .. ..........+++++++|..+.++.+- +....|...++.. .........+
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~-s~Dg~v~iwD~~~--~~~~~~~~~~ 191 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC-LADGSIAVLQVTE--TVKVCATLPS 191 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE-ETTSCEEEEEESS--SEEEEEEECG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE-ECCCeEEEEEcCC--CcceeeccCC
Confidence 66788999987543 11 111111245689999999866666655 3356678888775 2222112223
Q ss_pred CcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 263 IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 263 ~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
-..+..++++++++.|+.+. .++.|...+.++
T Consensus 192 ~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~~ 223 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPTL 223 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEE-TTSCEEEECTTC
T ss_pred CCceeEEEEcCCCCEEEEEc-CCCcEEEEccCC
Confidence 34678888888877777665 345666666654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=92.77 E-value=6.4 Score=36.87 Aligned_cols=159 Identities=8% Similarity=-0.006 Sum_probs=94.4
Q ss_pred eEEEEEEcCCCEEEEEEC-CCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCce
Q psy13629 131 GAAIDYYYKKSMVCWTDH-GTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 209 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~-~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~ 209 (395)
...++|+++++.|..+.. .++.|...+.... .....+ ..-..+.++++.+.++.|..+. .+.+.+.+......
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~---~~~~~~-~~~~~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~~~ 209 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDL---TEKFEI-ETRGEVKDLHFSTDGKVVAYIT--GSSLEVISTVTGSC 209 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTT---EEEEEE-ECSSCCCEEEECTTSSEEEEEC--SSCEEEEETTTCCE
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCC---cEEEEe-CCCCceEEEEEccCCceEEecc--ceeEEEEEeccCcc
Confidence 568999999998876543 4678999998864 222222 2345688999998666665443 34566666554433
Q ss_pred EE-EEe-cCCCCceeEEEeCCCCeEEEEeeCCC--CeEEEEecCCCCcceEE----EEecCCcCceeEEEeccccEEEEe
Q psy13629 210 KV-LYW-EDIDQPRAIALVPQDSIMFWTDWGEV--PKIERGAMNGDPRHRKV----IVDSTIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 210 ~~-l~~-~~~~~P~~iavdp~~g~LYwtd~~~~--~~I~~~~~dG~~~~~~~----lv~~~~~~P~glalD~~~~rLYwa 281 (395)
.. ... ......+.++++|.+..+..+..... ..+...+... ..... .+..+....+.+++.++++.|..+
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg 287 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS--GNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA 287 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET--TEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc--ceecceeeeeecCCCCCeEeEEECCCCCceEEE
Confidence 22 221 12334688999998777766543322 2455555543 22211 223344456788898777766555
Q ss_pred ccceeeeeeecccccee
Q psy13629 282 DGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 282 D~~~~~I~~~~~dG~~~ 298 (395)
. .++.|...+......
T Consensus 288 s-~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 288 S-NDNSIALVKLKDLSM 303 (365)
T ss_dssp E-TTSCEEEEETTTTEE
T ss_pred c-CCCEEEEEECCCCcE
Confidence 4 356677777654443
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=92.63 E-value=1.5 Score=44.92 Aligned_cols=107 Identities=10% Similarity=0.119 Sum_probs=67.7
Q ss_pred CCCCcceEEEecCCCeEEEEeCC---------------------CCeEEEEECCCCce-------EEEEe----------
Q psy13629 173 GLITPDGLAIDWLTEKLYWTDSE---------------------TNKLEVSSLDGKKR-------KVLYW---------- 214 (395)
Q Consensus 173 ~~~~p~glAVD~~~~~LYwtd~~---------------------~~~I~v~~ldg~~~-------~~l~~---------- 214 (395)
.+.+|+|+++++.++.+|++-.. .++|.++..++... ..++.
T Consensus 382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~ 461 (592)
T 3zwu_A 382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT 461 (592)
T ss_dssp CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence 35689999999999999999642 36799888764321 11111
Q ss_pred -----------cCCCCceeEEEeCCCCeEEEEeeCC-----------CCeEEEEecCCCCcceEEEEecCCcCceeEEEe
Q psy13629 215 -----------EDIDQPRAIALVPQDSIMFWTDWGE-----------VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAID 272 (395)
Q Consensus 215 -----------~~~~~P~~iavdp~~g~LYwtd~~~-----------~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD 272 (395)
..+..|-.|++||. |.|+++.=+. +..+...+.+.. .-++.+....-....|++++
T Consensus 462 ~~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-~~~rf~~~P~gaE~TG~~fs 539 (592)
T 3zwu_A 462 PKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFS 539 (592)
T ss_dssp GGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEEC
T ss_pred ccccccccCCCCCccCCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCC-eEEEEEeCCCCccCcCeeEC
Confidence 12678999999995 4566654231 234555555421 33344443334467788888
Q ss_pred ccccEEEEe
Q psy13629 273 FNNRLLYWI 281 (395)
Q Consensus 273 ~~~~rLYwa 281 (395)
++++.||+.
T Consensus 540 pDg~tlfvn 548 (592)
T 3zwu_A 540 PDQKTLFVG 548 (592)
T ss_dssp TTSSEEEEE
T ss_pred CCCCEEEEE
Confidence 888888875
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.22 E-value=9.8 Score=38.80 Aligned_cols=142 Identities=6% Similarity=-0.014 Sum_probs=93.1
Q ss_pred CeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCc-----eEEEE---eCCCCCcceEEEecCCCeEEEEeCCCCeEEE
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGS-----KHNVI---TNGLITPDGLAIDWLTEKLYWTDSETNKLEV 201 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~-----~~~i~---~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v 201 (395)
...+++|+++++.|+... .+++|...++.+..+.+ ..++- .+.......+|..+.+ ..+-...+.|.+
T Consensus 131 sv~svafSPDG~~LAsgs-~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrl 206 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGN-EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFS 206 (588)
T ss_dssp CEEEEEECSSSSCEEEEE-TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEE
T ss_pred cEEEEEEcCCCCEEEEEc-CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEE
Confidence 488999999999888776 78999999998763211 12222 1122467778877643 556667899999
Q ss_pred EECCCCceE----EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEE--eccc
Q psy13629 202 SSLDGKKRK----VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAI--DFNN 275 (395)
Q Consensus 202 ~~ldg~~~~----~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glal--D~~~ 275 (395)
.++++.... ++....-....++++. ++.|-.+. ...|...+.++ ....++...+.....++++ ..++
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~---~~tIkLWd~~~--~~~~~~~~gh~~~V~~va~~~s~d~ 279 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC---PGYVHKIDLKN--YSISSLKTGSLENFHIIPLNHEKES 279 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC---SSEEEEEETTT--TEEEEEECSCCSCCCEEEETTCSSC
T ss_pred EECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe---CCeEEEEECCC--CeEEEEEcCCCceEEEEEeeeCCCC
Confidence 999987742 2322233568899998 45665443 36899999887 4443444345566677777 5444
Q ss_pred cEEEEec
Q psy13629 276 RLLYWID 282 (395)
Q Consensus 276 ~rLYwaD 282 (395)
..|-.++
T Consensus 280 ~~La~a~ 286 (588)
T 2j04_A 280 TILLMSN 286 (588)
T ss_dssp EEEEECS
T ss_pred CEEEEEc
Confidence 4455554
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=92.20 E-value=8.1 Score=36.68 Aligned_cols=154 Identities=6% Similarity=-0.069 Sum_probs=101.0
Q ss_pred EecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCC-ceEEEEeCCCCCcceEEEecCCCeEEEEe--CCCCeE
Q psy13629 123 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG-SKHNVITNGLITPDGLAIDWLTEKLYWTD--SETNKL 199 (395)
Q Consensus 123 ~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~-~~~~i~~~~~~~p~glAVD~~~~~LYwtd--~~~~~I 199 (395)
.+........++.+.+.++.+... ..++.|...+....... ...............++..+...++..+- ...+.|
T Consensus 225 ~~~~h~~~~~~~~~~~~g~~l~s~-~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 225 TLSGHSQEVCGLRWAPDGRHLASG-GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEE-ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred EecccccceeeeeecCCCCeeeee-eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 334456677888888887766544 47788888877643211 11122223344567788888777777654 346889
Q ss_pred EEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEE
Q psy13629 200 EVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLY 279 (395)
.+.++........+ .....+..++..+..+.|+.+.......|...++.. ......+..+......|++.+++..|.
T Consensus 304 ~iwd~~t~~~~~~~-~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~--~~~v~~l~gH~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 304 RIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp EEEETTTTEEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred EEEeCCccccceee-ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 99999877766555 445678899999999988877633456788888865 233333344555678888887666554
Q ss_pred E
Q psy13629 280 W 280 (395)
Q Consensus 280 w 280 (395)
-
T Consensus 381 S 381 (420)
T 4gga_A 381 S 381 (420)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.57 E-value=9.4 Score=36.12 Aligned_cols=182 Identities=7% Similarity=-0.074 Sum_probs=101.1
Q ss_pred EEEEeeCCC---CC--ccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEcc----CCCCCceEEEEeC-------
Q psy13629 109 DIRIANLSR---PL--KPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD----GNNVGSKHNVITN------- 172 (395)
Q Consensus 109 ~I~~~~l~~---~~--~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~d----g~~~~~~~~i~~~------- 172 (395)
.|++.++.. .. ...........+.+++|++.++.|+... .++.|..++++ +. ........
T Consensus 87 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s-~dg~i~vwd~~~~~~~~---~~~~~~~~~i~~~~~ 162 (437)
T 3gre_A 87 VIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS-KDGQIIVLKVNHYQQES---EVKFLNCECIRKINL 162 (437)
T ss_dssp EEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE-TTSEEEEEEEEEEEETT---EEEEEEEEEEEEEEG
T ss_pred eEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe-CCCEEEEEEeccccCCc---eeeccccceeEEEEc
Confidence 577776643 11 1122224567789999998777666544 77888888774 32 11111000
Q ss_pred ----CCCCcceEEEec-CCCeEEEEeCCCCeEEEEECCCCceEEEEec--CCCCceeEEEeCCCCeEEEEeeCCCCeEEE
Q psy13629 173 ----GLITPDGLAIDW-LTEKLYWTDSETNKLEVSSLDGKKRKVLYWE--DIDQPRAIALVPQDSIMFWTDWGEVPKIER 245 (395)
Q Consensus 173 ----~~~~p~glAVD~-~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~--~~~~P~~iavdp~~g~LYwtd~~~~~~I~~ 245 (395)
....+..++.-+ ..+.+.++-...+.|.+.++........+.. ......+++++|...+|+... ....|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~--~dg~i~i 240 (437)
T 3gre_A 163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT--TRGIIDI 240 (437)
T ss_dssp GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE--TTSCEEE
T ss_pred cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc--CCCeEEE
Confidence 111222333111 2355556666788999999987666555534 356789999999877776554 2455777
Q ss_pred EecCCCCcceEEEEecCCcCceeEEEec---cccEEEEeccceeeeeeeccccce
Q psy13629 246 GAMNGDPRHRKVIVDSTIFWPNGIAIDF---NNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 246 ~~~dG~~~~~~~lv~~~~~~P~glalD~---~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
.++... .....+...+-.....+++.+ .++++.++-..++.|..-++....
T Consensus 241 wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 241 WDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp EETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred EEcCCc-cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 777641 112222112222344554442 234455555556777777775443
|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
Probab=91.43 E-value=0.071 Score=56.60 Aligned_cols=65 Identities=35% Similarity=0.709 Sum_probs=56.1
Q ss_pred ecccccchhhHHHhhhhcccccceeeeeecceeeeeeecCCCCCCCCccCcccccccCCCCceeE
Q psy13629 44 IRPEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQPDGAYLL 108 (395)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Li~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 108 (395)
.+.+++.|+|++.|..++++++..++..+||.|++.+.++.+....|....++.+...++++|+-
T Consensus 595 ~~~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~l~~~~~~~P~~v~ls~~~l~~~giyLL 659 (770)
T 3efo_B 595 SRPEISTDERAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSEEGIFLL 659 (770)
T ss_dssp CSSSSCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECTTCCSSSCSCCCCCCSSGGGCCTTCEEEE
T ss_pred CCCCCCccHHHHHHHHHHCCCHHHHHHhhccceEEEeccccccccCCCCcCCcHHHcCCCcEEEE
Confidence 45789999999999999999999999999999999988776655667777788888888888873
|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.076 Score=56.34 Aligned_cols=65 Identities=31% Similarity=0.459 Sum_probs=54.3
Q ss_pred eecccccchhhHHHhhhhcccccceeeeeecceeeeeeecCCCCCCCCccCcccccccCCCCcee
Q psy13629 43 LIRPEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNSDEMPVQERCSFEKLQPDGAYL 107 (395)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Li~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 107 (395)
+.+.+++.|+|++.|..++++++..++..+||.|++.+.++.+....|....++.+...++++|+
T Consensus 590 ~~~~~~s~Der~~~~~~l~~~~~~~~l~~iyP~L~~~h~~~~~~~~~P~~v~ls~~~l~~~giyL 654 (766)
T 3eh2_A 590 QPGAEVTTDDRAYVRQLVTSMDVTETNVFFYPRLLPLTKSPVESTTEPPAVRASEERLSNGDIYL 654 (766)
T ss_dssp SCCTTCCHHHHHHHHHHHHHCCHHHHHHHHSCEEEECSSCCCSCC--CCCBCSSGGGCCTTCEEE
T ss_pred cCCCCCCccHHHHHHHHHHCCCHHHHHHHHhheEEEeecCCcccccCCCCcCCcHHHcCCCcEEE
Confidence 34568999999999999999999999999999999998777665456666778888888888887
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=4.2 Score=36.34 Aligned_cols=110 Identities=12% Similarity=-0.004 Sum_probs=69.8
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC----CceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEEC
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV----GSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 204 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~----~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~l 204 (395)
.+...|+|++ ++.||.. .++.+++.+...... .....|-..+...=..+.+|+ ++.||.. .++.|++.+.
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence 3556899999 6779988 667899888643110 011222222333346899995 8999999 3489999987
Q ss_pred --CCCc-----eEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEec
Q psy13629 205 --DGKK-----RKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAM 248 (395)
Q Consensus 205 --dg~~-----~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~ 248 (395)
++.. -..+.......-..|+++| +|.||-.. . .++++-..
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~-d--g~lyr~~~ 161 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH-G--QQFYKALP 161 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE-T--TEEEEECC
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe-C--CcEEecCC
Confidence 3322 1334434455668899998 77898776 3 44655433
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=90.93 E-value=6.7 Score=35.71 Aligned_cols=170 Identities=8% Similarity=-0.033 Sum_probs=90.5
Q ss_pred EEEEeeCCCCC-c-cEEecCCCCCeEEEEEEcCC-CEEEEEECCCCeEEEEEccCCCCCceEE--EEeCCCCCcceEEEe
Q psy13629 109 DIRIANLSRPL-K-PVTIIKDLEEGAAIDYYYKK-SMVCWTDHGTEMISCCTFDGNNVGSKHN--VITNGLITPDGLAID 183 (395)
Q Consensus 109 ~I~~~~l~~~~-~-~~~~~~~~~~~~gl~~d~~~-~~lywsd~~~~~I~~~~~dg~~~~~~~~--i~~~~~~~p~glAVD 183 (395)
.|++.++.... . ...+......+.+++|++.. +.++.+...++.|...++.+.. .... ...........++..
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~--~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG--QWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS--CEEECCBTTSSSSCBCCCEEC
T ss_pred EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC--CcceeeeeccccCCcceEEEc
Confidence 57777775521 1 22233345678899999873 4566676678889888887541 1111 111111233445544
Q ss_pred cCC----------------CeEEEEeCCCCeEEEEECCCCce---EEEEecCCCCceeEEEeCCC---CeEEEEeeCCCC
Q psy13629 184 WLT----------------EKLYWTDSETNKLEVSSLDGKKR---KVLYWEDIDQPRAIALVPQD---SIMFWTDWGEVP 241 (395)
Q Consensus 184 ~~~----------------~~LYwtd~~~~~I~v~~ldg~~~---~~l~~~~~~~P~~iavdp~~---g~LYwtd~~~~~ 241 (395)
+.. ++++.+-...+.|.+.++.+... ...+...-...++++++|.. +.+..+- +...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~-s~D~ 238 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC-SQDG 238 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE-ETTC
T ss_pred cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE-cCCC
Confidence 421 24556666677888888764421 11121234557899999875 2344444 3345
Q ss_pred eEEEEecCCCCcc--eEEEEecCCcCceeEEEeccccEEEEe
Q psy13629 242 KIERGAMNGDPRH--RKVIVDSTIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 242 ~I~~~~~dG~~~~--~~~lv~~~~~~P~glalD~~~~rLYwa 281 (395)
.|...+++..... ...++..+-.....+++.+.+..|..+
T Consensus 239 ~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~ 280 (316)
T 3bg1_A 239 RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280 (316)
T ss_dssp EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence 6777766541011 111223333356677777666555443
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=90.45 E-value=11 Score=34.96 Aligned_cols=82 Identities=15% Similarity=-0.019 Sum_probs=56.2
Q ss_pred cEEecCCCCCeEEEEEEcCCCEEEEEECCCCe-EEEEEccCCCCCceEEEEe-C-CCCCcceEEEecCCCeEEEEeCCCC
Q psy13629 121 PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEM-ISCCTFDGNNVGSKHNVIT-N-GLITPDGLAIDWLTEKLYWTDSETN 197 (395)
Q Consensus 121 ~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~-I~~~~~dg~~~~~~~~i~~-~-~~~~p~glAVD~~~~~LYwtd~~~~ 197 (395)
...+......+.+++|++.++.|. +...+++ |...++... .....+. . .......+++++.+..| .+-...+
T Consensus 188 ~~~~~~h~~~v~~~~~s~~g~~l~-s~s~d~~~v~iwd~~~~---~~~~~~~~g~h~~~v~~~~~s~~~~~l-~s~s~d~ 262 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNRKSDMVA-TCSQDGTIIRVFKTEDG---VLVREFRRGLDRADVVDMKWSTDGSKL-AVVSDKW 262 (355)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEE-EEETTCSEEEEEETTTC---CEEEEEECTTCCSCEEEEEECTTSCEE-EEEETTC
T ss_pred cEEEEccCCceEEEEECCCCCEEE-EEeCCCCEEEEEECCCC---cEEEEEEcCCCCCcEEEEEECCCCCEE-EEEECCC
Confidence 344555667789999999776555 5557787 999999854 2233333 2 34668899999855555 4555678
Q ss_pred eEEEEECCCC
Q psy13629 198 KLEVSSLDGK 207 (395)
Q Consensus 198 ~I~v~~ldg~ 207 (395)
.|.+.++...
T Consensus 263 ~v~iw~~~~~ 272 (355)
T 3vu4_A 263 TLHVFEIFND 272 (355)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEEccCC
Confidence 9999998643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=89.96 E-value=10 Score=34.40 Aligned_cols=184 Identities=7% Similarity=-0.058 Sum_probs=98.5
Q ss_pred EEEEeeCCCCCc--cEEecCCCCCeEEEEEEcC-CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 109 DIRIANLSRPLK--PVTIIKDLEEGAAIDYYYK-KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~~~--~~~~~~~~~~~~gl~~d~~-~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.|++.++..... ...+......+.+++|.+. .+.++.+...+++|...++..... .....+.........+++.+.
T Consensus 36 ~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~ 114 (316)
T 3bg1_A 36 SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWAPH 114 (316)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEECCT
T ss_pred eEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEECCC
Confidence 577777754221 2233445667889999753 244555666788999888875321 111222233456788999875
Q ss_pred C-CeEEEEeCCCCeEEEEECCCCceEEEEe---cCCCCceeEEEeCCC----------------CeEEEEeeCCCCeEEE
Q psy13629 186 T-EKLYWTDSETNKLEVSSLDGKKRKVLYW---EDIDQPRAIALVPQD----------------SIMFWTDWGEVPKIER 245 (395)
Q Consensus 186 ~-~~LYwtd~~~~~I~v~~ldg~~~~~l~~---~~~~~P~~iavdp~~----------------g~LYwtd~~~~~~I~~ 245 (395)
. +.+..+-...+.|.+.++.+.....+.. ........++.+|.. +.++.+- +....|..
T Consensus 115 ~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-s~D~~v~l 193 (316)
T 3bg1_A 115 DYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-GCDNLIKL 193 (316)
T ss_dssp TTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC-BTTSBCCE
T ss_pred CCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe-cCCCeEEE
Confidence 3 5666677778889998887653222111 112334567777652 2344443 22344444
Q ss_pred EecCCCCcceE-EEEecCCcCceeEEEeccc---cEEEEeccceeeeeeeccc
Q psy13629 246 GAMNGDPRHRK-VIVDSTIFWPNGIAIDFNN---RLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 246 ~~~dG~~~~~~-~lv~~~~~~P~glalD~~~---~rLYwaD~~~~~I~~~~~d 294 (395)
.++++...... ..+..+-.+.+.+++.+.+ +.+..+-..+++|..-+++
T Consensus 194 Wd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 194 WKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp EEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred EEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 55543101111 1122344456777777554 2344444445566555544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=11 Score=33.68 Aligned_cols=102 Identities=12% Similarity=0.041 Sum_probs=63.5
Q ss_pred CCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC-------CceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEE
Q psy13629 173 GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG-------KKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIER 245 (395)
Q Consensus 173 ~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg-------~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~ 245 (395)
+......||+++ ++.||.. ..+.+++.+... ...+.+-......=.++.+|| +|.||.+. ..+|+|
T Consensus 39 gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav~---dG~iyr 111 (236)
T 1tl2_A 39 GWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAVS---KDKLYK 111 (236)
T ss_dssp SCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEEE---TTEEEE
T ss_pred ccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEeC---CCEEEE
Confidence 467888999999 9999998 567899988744 222233222333356889996 78999883 478999
Q ss_pred Eec--CCCCc---ceEEEEecCCcCceeEEEeccccEEEEec
Q psy13629 246 GAM--NGDPR---HRKVIVDSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 246 ~~~--dG~~~---~~~~lv~~~~~~P~glalD~~~~rLYwaD 282 (395)
.+. ++... ....+-+..-..-.-|..| .++.||-+.
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~ 152 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH 152 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe
Confidence 987 43110 1122222222223556666 455677665
|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
Probab=89.15 E-value=0.15 Score=54.04 Aligned_cols=66 Identities=23% Similarity=0.341 Sum_probs=52.3
Q ss_pred eeecccccchhhHHHhhhhcccccceeeeeecceeeeeeecCCCC--------CCCCccCcccccccCCCCcee
Q psy13629 42 HLIRPEISLDDRSFALYSATIMDIPSSVVYLYPHLISLHVIDPNS--------DEMPVQERCSFEKLQPDGAYL 107 (395)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Li~~~~~~~~~--------~~~~~~~~C~~~~~~~~~~~~ 107 (395)
|..+.+++.|+|++.|+.++++++..++..+||.|++.++++.+. .+.|...+++.+...++++|+
T Consensus 570 ~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~~l~ls~~~l~~~giyL 643 (751)
T 3eh1_A 570 FRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFL 643 (751)
T ss_dssp TCCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCCCCBCSSGGGCCTTSEEE
T ss_pred hcCCCCCChhHHHHHHHHHhCCCHHHHHhhccceEEEeecCccccCcccCCCccCCCCcccCCHHHcccCCEEE
Confidence 445678899999999999999999999999999999998665432 134555667777777777776
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.01 E-value=24 Score=36.75 Aligned_cols=150 Identities=8% Similarity=-0.079 Sum_probs=88.2
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC-----CCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG-----LITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~-----~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
..+.++..|.. +.|+.... +.|.+++.++.. ........ ...+.+|+.|. .++|++.... +-+.+++
T Consensus 450 ~~v~~i~~d~~-g~lwigt~--~Gl~~~~~~~~~---~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~-~Gl~~~~ 521 (781)
T 3v9f_A 450 LDVRVFYEDKN-KKIWIGTH--AGVFVIDLASKK---VIHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFG-GGVGIYT 521 (781)
T ss_dssp CCEEEEEECTT-SEEEEEET--TEEEEEESSSSS---CCEEECTTTSSCSCSCEEEEEECT-TCCEEEEESS-SCEEEEC
T ss_pred CeEEEEEECCC-CCEEEEEC--CceEEEeCCCCe---EEecccCcccccccceeEEEEEcC-CCCEEEEEcC-CCEEEEe
Confidence 45777877754 45666543 678888877542 22222211 24578899996 6778776643 3488888
Q ss_pred CCCCceEEEEec-C--CCCceeEEEeCCCCeEEEEeeCCCCeE-EEEecCCCCcceEEEEecCCc----CceeEEEeccc
Q psy13629 204 LDGKKRKVLYWE-D--IDQPRAIALVPQDSIMFWTDWGEVPKI-ERGAMNGDPRHRKVIVDSTIF----WPNGIAIDFNN 275 (395)
Q Consensus 204 ldg~~~~~l~~~-~--~~~P~~iavdp~~g~LYwtd~~~~~~I-~~~~~dG~~~~~~~lv~~~~~----~P~glalD~~~ 275 (395)
.++...+.+... . ....++|+.|+ .|.|+++. ..-+ .+.+.++ ..-+. +...-+ ...+++.| .+
T Consensus 522 ~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~T---~~Glv~~~d~~~--~~~~~-~~~~~gl~~~~i~~i~~d-~~ 593 (781)
T 3v9f_A 522 PDMQLVRKFNQYEGFCSNTINQIYRSS-KGQMWLAT---GEGLVCFPSARN--FDYQV-FQRKEGLPNTHIRAISED-KN 593 (781)
T ss_dssp TTCCEEEEECTTTTCSCSCEEEEEECT-TSCEEEEE---TTEEEEESCTTT--CCCEE-ECGGGTCSCCCCCEEEEC-SS
T ss_pred CCCCeEEEccCCCCCCCCeeEEEEECC-CCCEEEEE---CCCceEEECCCC--CcEEE-ccccCCCCCceEEEEEEC-CC
Confidence 877654443311 1 23467888886 56787765 2345 7777655 22222 222211 34578888 56
Q ss_pred cEEEEeccceeeeeeeccccc
Q psy13629 276 RLLYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 276 ~rLYwaD~~~~~I~~~~~dG~ 296 (395)
++||++- .+-|.+.+.+..
T Consensus 594 g~lW~~t--~~Gl~~~~~~~~ 612 (781)
T 3v9f_A 594 GNIWAST--NTGISCYITSKK 612 (781)
T ss_dssp SCEEEEC--SSCEEEEETTTT
T ss_pred CCEEEEc--CCceEEEECCCC
Confidence 7787775 234666666543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.93 E-value=8 Score=38.68 Aligned_cols=176 Identities=6% Similarity=-0.087 Sum_probs=101.6
Q ss_pred EEEEeeCCCCCcc-----------EEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCc
Q psy13629 109 DIRIANLSRPLKP-----------VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITP 177 (395)
Q Consensus 109 ~I~~~~l~~~~~~-----------~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p 177 (395)
.|++.++...... ..+......+.+++|++. +. ..+...+++|...+++... .........-...
T Consensus 236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~-lasgs~DgtV~lWD~~~~~--~~~~~~~~H~~~V 311 (524)
T 2j04_B 236 TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TT-VVCGFKNGFVAEFDLTDPE--VPSFYDQVHDSYI 311 (524)
T ss_dssp CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SE-EEEEETTSEEEEEETTBCS--SCSEEEECSSSCE
T ss_pred eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-Ce-EEEEeCCCEEEEEECCCCC--CceEEeecccccE
Confidence 6777777652111 122334467889999864 44 4566688999999998532 1122233334456
Q ss_pred ceEEEec-CCC-eEEEEeCCCCeEEEEECCCCceE-EEEecC-CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc
Q psy13629 178 DGLAIDW-LTE-KLYWTDSETNKLEVSSLDGKKRK-VLYWED-IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR 253 (395)
Q Consensus 178 ~glAVD~-~~~-~LYwtd~~~~~I~v~~ldg~~~~-~l~~~~-~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~ 253 (395)
.+|+..+ ..+ ++..+-+..++|.+.++...... ++.... ......++++|.... +.+- +....|...++... .
T Consensus 312 ~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~-~~d~tv~lwd~~~~-~ 388 (524)
T 2j04_B 312 LSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS-YIYS-DGASSLRAVPSRAA-F 388 (524)
T ss_dssp EEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE-EEEE-CSSSEEEEEETTCT-T
T ss_pred EEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCe-EEEe-CCCCcEEEEECccc-c
Confidence 7775432 234 77788888899999998654332 332221 224678999997655 4443 23455777776541 2
Q ss_pred ceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 254 HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 254 ~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
....+. .+....+.+++.+.+..|. +-..+++|..-+.
T Consensus 389 ~~~~l~-gH~~~V~sva~Sp~g~~l~-Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 389 AVHPLV-SRETTITAIGVSRLHPMVL-AGSADGSLIITNA 426 (524)
T ss_dssp CCEEEE-ECSSCEEEEECCSSCCBCE-EEETTTEEECCBS
T ss_pred cceeee-cCCCceEEEEeCCCCCeEE-EEECCCEEEEEec
Confidence 223333 3555778888886655443 3334455554444
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=87.87 E-value=17 Score=33.65 Aligned_cols=112 Identities=6% Similarity=0.011 Sum_probs=70.3
Q ss_pred EEEEcCCCEEEEE-ECCCCeEEEEEccCCCCC-----c-------e-EEEEeCCCCCcceEEEecCCCeEEEEeCCCCe-
Q psy13629 134 IDYYYKKSMVCWT-DHGTEMISCCTFDGNNVG-----S-------K-HNVITNGLITPDGLAIDWLTEKLYWTDSETNK- 198 (395)
Q Consensus 134 l~~d~~~~~lyws-d~~~~~I~~~~~dg~~~~-----~-------~-~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~- 198 (395)
.++.+ +.+.++ ...++.|...++...... . . ...+......+..+++++. +++..+-...++
T Consensus 143 ~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 143 CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-SDMVATCSQDGTI 219 (355)
T ss_dssp EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-SSEEEEEETTCSE
T ss_pred EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-CCEEEEEeCCCCE
Confidence 34554 555555 556788888888753100 0 0 1223334456889999984 455556667787
Q ss_pred EEEEECCCCceEEEEe-c-CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 199 LEVSSLDGKKRKVLYW-E-DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 199 I~v~~ldg~~~~~l~~-~-~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
|.+.++....+...+. . .....++++++|...+|..+. ....|...++..
T Consensus 220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s--~d~~v~iw~~~~ 271 (355)
T 3vu4_A 220 IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS--DKWTLHVFEIFN 271 (355)
T ss_dssp EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE--TTCEEEEEESSC
T ss_pred EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE--CCCEEEEEEccC
Confidence 9999998665554443 2 456789999999877776554 245677777654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.48 E-value=29 Score=36.06 Aligned_cols=151 Identities=11% Similarity=-0.027 Sum_probs=84.8
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC--CCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN--GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~--~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
..+.++..|.. +.|++.. ..+.|.+++.+.. ....+... ....+..|+.|. .++|++... +.+.+++.++
T Consensus 407 ~~v~~i~~d~~-g~lWigt-~~~Gl~~~~~~~~---~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~--~Gl~~~~~~~ 478 (781)
T 3v9f_A 407 NSVLCSLKDSE-GNLWFGT-YLGNISYYNTRLK---KFQIIELEKNELLDVRVFYEDK-NKKIWIGTH--AGVFVIDLAS 478 (781)
T ss_dssp SBEEEEEECTT-SCEEEEE-TTEEEEEECSSSC---EEEECCSTTTCCCCEEEEEECT-TSEEEEEET--TEEEEEESSS
T ss_pred cceEEEEECCC-CCEEEEe-ccCCEEEEcCCCC---cEEEeccCCCCCCeEEEEEECC-CCCEEEEEC--CceEEEeCCC
Confidence 34667777654 3454433 3456777766543 12222111 224567888886 678877765 6799999877
Q ss_pred CceEEEEecC-----CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec-CC--cCceeEEEeccccEE
Q psy13629 207 KKRKVLYWED-----IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS-TI--FWPNGIAIDFNNRLL 278 (395)
Q Consensus 207 ~~~~~l~~~~-----~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~-~~--~~P~glalD~~~~rL 278 (395)
.....+.... ...+++|+.|+ .|.|+++..+ .-+.+.+.++ ...+.+... .+ .....|..| .+++|
T Consensus 479 ~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~--~Gl~~~~~~~--~~~~~~~~~~~l~~~~i~~i~~d-~~g~l 552 (781)
T 3v9f_A 479 KKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFG--GGVGIYTPDM--QLVRKFNQYEGFCSNTINQIYRS-SKGQM 552 (781)
T ss_dssp SSCCEEECTTTSSCSCSCEEEEEECT-TCCEEEEESS--SCEEEECTTC--CEEEEECTTTTCSCSCEEEEEEC-TTSCE
T ss_pred CeEEecccCcccccccceeEEEEEcC-CCCEEEEEcC--CCEEEEeCCC--CeEEEccCCCCCCCCeeEEEEEC-CCCCE
Confidence 5544443222 35678899996 6778777632 3488887765 222222211 11 134567777 45667
Q ss_pred EEeccceeeeeeeccc
Q psy13629 279 YWIDGRLTFIEVMDYD 294 (395)
Q Consensus 279 YwaD~~~~~I~~~~~d 294 (395)
+++.. .+-|.+.+.+
T Consensus 553 Wi~T~-~Glv~~~d~~ 567 (781)
T 3v9f_A 553 WLATG-EGLVCFPSAR 567 (781)
T ss_dssp EEEET-TEEEEESCTT
T ss_pred EEEEC-CCceEEECCC
Confidence 66653 3332555544
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=85.33 E-value=25 Score=33.03 Aligned_cols=97 Identities=4% Similarity=-0.163 Sum_probs=64.1
Q ss_pred EEEEeeCCCCCccE-Ee----cCCCCCeEEEEEEc-------CCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCC
Q psy13629 109 DIRIANLSRPLKPV-TI----IKDLEEGAAIDYYY-------KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLIT 176 (395)
Q Consensus 109 ~I~~~~l~~~~~~~-~~----~~~~~~~~gl~~d~-------~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~ 176 (395)
.|++.+........ .. ......+.+++|.+ ..+++..+...+++|...++... .........-..
T Consensus 112 ~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~---~~~~~~~~~~~~ 188 (393)
T 4gq1_A 112 TVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE---GPILAGYPLSSP 188 (393)
T ss_dssp CEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT---EEEEEEEECSSC
T ss_pred cEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC---ceeeeecCCCCC
Confidence 56777765522211 11 12345688999986 24678888888999999998754 222333333455
Q ss_pred cceEEEecCCCeEEEEeCCCCeEEEEECCCCc
Q psy13629 177 PDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208 (395)
Q Consensus 177 p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~ 208 (395)
+..++..+.+.++..+-...+.|.+.|+....
T Consensus 189 v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 189 GISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred cEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 67888888776677777778899999987643
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.17 E-value=35 Score=34.69 Aligned_cols=160 Identities=8% Similarity=-0.025 Sum_probs=103.0
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCC----CCcceEEEecCCCeEEEEeCCCCeEEE
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL----ITPDGLAIDWLTEKLYWTDSETNKLEV 201 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~----~~p~glAVD~~~~~LYwtd~~~~~I~v 201 (395)
.....+.+++|++++..|-.+. .++.|...+.++ ....+ .+.. .....+++.+.++.|+.+. ..++|..
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s-~dg~V~iwd~~~----~l~~l-~~~~~~~~~sv~svafSPDG~~LAsgs-~DGtVkI 155 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLS-NNGNVSVFKDNK----MLTNL-DSKGNLSSRTYHCFEWNPIESSIVVGN-EDGELQF 155 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEE-TTSCEEEEETTE----EEEEC-CCSSCSTTTCEEEEEECSSSSCEEEEE-TTSEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCc----eeeec-cCCCccccccEEEEEEcCCCCEEEEEc-CCCEEEE
Confidence 3367799999999998887766 677777777443 11111 1111 2477899999888887665 5789999
Q ss_pred EECCCCce--------EEEE---ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcc--eEEEEecCCcCcee
Q psy13629 202 SSLDGKKR--------KVLY---WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH--RKVIVDSTIFWPNG 268 (395)
Q Consensus 202 ~~ldg~~~--------~~l~---~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~--~~~lv~~~~~~P~g 268 (395)
.++.+... .++- .........++.+|++ ..+- +....|...+.++.... .+++-..+-....+
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laas-s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAA-LSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEE-ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEE-eCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 99998742 2221 1223589999999965 3343 33567888888873211 12332233345777
Q ss_pred EEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
+++. ++.|-.+. .+.|..-+.++.....
T Consensus 232 vaFs--g~~LASa~--~~tIkLWd~~~~~~~~ 259 (588)
T 2j04_A 232 LKIV--DYKVVLTC--PGYVHKIDLKNYSISS 259 (588)
T ss_dssp EEEE--TTEEEEEC--SSEEEEEETTTTEEEE
T ss_pred EEEE--CCEEEEEe--CCeEEEEECCCCeEEE
Confidence 7776 56666664 4788888877766644
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=84.19 E-value=28 Score=32.77 Aligned_cols=183 Identities=10% Similarity=0.025 Sum_probs=111.2
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.++.................+++++ +. +..+...++.+...+..... ..............++...+.+..
T Consensus 170 ~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~-~l~sgs~d~~i~~~d~~~~~--~~~~~~~~h~~~~~~~~~~~~g~~ 244 (420)
T 4gga_A 170 EVQLWDVQQQKRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGRH 244 (420)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSS--CEEEEEECCSSCEEEEEECTTSSE
T ss_pred eEEEEEcCCCcEEEEEeCCCCceEEEeeC--CC-EEEEEeCCCceeEeeecccc--eeeEEecccccceeeeeecCCCCe
Confidence 67888887633344444455667777776 34 44555578888888876542 223334445566778888875555
Q ss_pred EEEEeCCCCeEEEEECCCCce----EEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCC
Q psy13629 189 LYWTDSETNKLEVSSLDGKKR----KVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTI 263 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~----~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~ 263 (395)
+ .+-...+.|.+.+...... .............++..|..+.++.+--+ ....|...++.. ......+. .-
T Consensus 245 l-~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t--~~~~~~~~-~~ 320 (420)
T 4gga_A 245 L-ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--GACLSAVD-AH 320 (420)
T ss_dssp E-EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT--TEEEEEEE-CS
T ss_pred e-eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc--cccceeec-cc
Confidence 5 4555677888888764321 11222334567889999988887776534 345677777765 22222222 23
Q ss_pred cCceeEEEeccccEEEEecc-ceeeeeeeccccceeee
Q psy13629 264 FWPNGIAIDFNNRLLYWIDG-RLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 264 ~~P~glalD~~~~rLYwaD~-~~~~I~~~~~dG~~~~~ 300 (395)
..+..+.....++.|+.+-. ..+.|..-++.......
T Consensus 321 ~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~ 358 (420)
T 4gga_A 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 358 (420)
T ss_dssp SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE
Confidence 35777788878888877653 35667776765444433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=84.11 E-value=37 Score=34.12 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=21.6
Q ss_pred EEEEEEcCCCEEEEEECC---------------CCeEEEEEccCC
Q psy13629 132 AAIDYYYKKSMVCWTDHG---------------TEMISCCTFDGN 161 (395)
Q Consensus 132 ~gl~~d~~~~~lywsd~~---------------~~~I~~~~~dg~ 161 (395)
..+++|+..+.|||.... .+.|..++.+..
T Consensus 238 ~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG 282 (571)
T 2ad6_A 238 GWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG 282 (571)
T ss_dssp SCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC
T ss_pred eeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC
Confidence 357899999999998642 135888887654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=83.47 E-value=38 Score=35.29 Aligned_cols=148 Identities=9% Similarity=-0.036 Sum_probs=82.1
Q ss_pred CeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC--------CCCCcceEEEecCCCe-EEEEeCCCCeEE
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN--------GLITPDGLAIDWLTEK-LYWTDSETNKLE 200 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~--------~~~~p~glAVD~~~~~-LYwtd~~~~~I~ 200 (395)
.+.++..|..+ .|+.. ...+-|.+++.+.. ........ ....+.+|+.|. .++ |++.. ..+.|.
T Consensus 358 ~V~~i~~d~~g-~lWiG-t~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt-~~~Gl~ 430 (795)
T 4a2l_A 358 VVSCIVEDKDK-NLWIG-TNDGGLNLYNPITQ---RFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGT-HAGGLS 430 (795)
T ss_dssp SEEEEEECTTS-CEEEE-ESSSCEEEECTTTC---CEEEECCC------CCSCSCEEEEEEET-TTTEEEEEE-TTTEEE
T ss_pred eeEEEEECCCC-CEEEE-ECCCCeEEEcCCCC---cEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEe-CcCcee
Confidence 46788887654 34443 34556777776643 22222211 124567888886 566 66554 345689
Q ss_pred EEECCCCceEEEEec----CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec----C--CcCceeEE
Q psy13629 201 VSSLDGKKRKVLYWE----DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS----T--IFWPNGIA 270 (395)
Q Consensus 201 v~~ldg~~~~~l~~~----~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~----~--~~~P~gla 270 (395)
+++.++.....+... .....++|+.|+ .|.|++... ..+.+.+.+. ..-+.+... . ......+.
T Consensus 431 ~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~---~Gl~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~i~ 504 (795)
T 4a2l_A 431 ILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGTL---SALVRFNPEQ--RSFTTIEKEKDGTPVVSKQITTLF 504 (795)
T ss_dssp EEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEES---SCEEEEETTT--TEEEECCBCTTCCBCCCCCEEEEE
T ss_pred EEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEec---CceeEEeCCC--CeEEEccccccccccCCceEEEEE
Confidence 999876655444311 124578888886 667877763 3477777664 222222111 1 12456677
Q ss_pred EeccccEEEEeccceeeeeeecc
Q psy13629 271 IDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 271 lD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
.| .+++||++.. +-+.+.+.
T Consensus 505 ~d-~~g~lWigt~--~Gl~~~~~ 524 (795)
T 4a2l_A 505 RD-SHKRLWIGGE--EGLSVFKQ 524 (795)
T ss_dssp EC-TTCCEEEEES--SCEEEEEE
T ss_pred EC-CCCCEEEEeC--CceEEEeC
Confidence 77 4566766653 33444443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.99 E-value=26 Score=30.82 Aligned_cols=153 Identities=6% Similarity=-0.062 Sum_probs=97.9
Q ss_pred EecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCC-ceEEEEeCCCCCcceEEEecCCCeEEEE--eCCCCeE
Q psy13629 123 TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVG-SKHNVITNGLITPDGLAIDWLTEKLYWT--DSETNKL 199 (395)
Q Consensus 123 ~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~-~~~~i~~~~~~~p~glAVD~~~~~LYwt--d~~~~~I 199 (395)
...........+++.+.++.|.-. ..++.|...++...... ...............++..+..+.+.++ ....+.|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i 223 (318)
T 4ggc_A 145 TLSGHSQEVCGLRWAPDGRHLASG-GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223 (318)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEE-ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEE
T ss_pred EEcCccCceEEEEEcCCCCEEEEE-ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEE
Confidence 344556678888898887766644 47888988888643211 1112222233455677777766666543 3456788
Q ss_pred EEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEE
Q psy13629 200 EVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLY 279 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLY 279 (395)
.+.+.......... ........+++.|..+.++.+.-.....|...++.. ......+..+....+.|++.+++..|.
T Consensus 224 ~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~--~~~~~~l~gH~~~V~~l~~spdg~~l~ 300 (318)
T 4ggc_A 224 RIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--MAKVAELKGHTSRVLSLTMSPDGATVA 300 (318)
T ss_dssp EEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred EEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 88888877665554 456678889999999888876523456788888865 233223344555678888886666554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=80.78 E-value=54 Score=33.67 Aligned_cols=30 Identities=7% Similarity=-0.088 Sum_probs=18.9
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
.+-++...++.||... ..+.+..++.....
T Consensus 480 ~~g~~~~~g~~v~~g~-~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 480 NGGTLTTAGNVVFQGT-ADGRLVAYHAATGE 509 (677)
T ss_dssp CCCEEEETTTEEEEEC-TTSEEEEEETTTCC
T ss_pred cCcceEeCCCEEEEEC-CCCcEEEEECCCCc
Confidence 4445555677888873 46777777765333
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=80.46 E-value=36 Score=31.39 Aligned_cols=133 Identities=8% Similarity=-0.027 Sum_probs=70.3
Q ss_pred CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEe-cCCC
Q psy13629 140 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW-EDID 218 (395)
Q Consensus 140 ~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~-~~~~ 218 (395)
++.||+.. ..+.+..++..... .. -......+.+++++ +++||+++. .+.+..++.......-... ....
T Consensus 239 ~~~v~~~~-~~g~l~~~d~~tG~---~~--w~~~~~~~~~~~~~--~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~ 309 (376)
T 3q7m_A 239 NGVVFALA-YNGNLTALDLRSGQ---IM--WKRELGSVNDFIVD--GNRIYLVDQ-NDRVMALTIDGGVTLWTQSDLLHR 309 (376)
T ss_dssp TTEEEEEC-TTSCEEEEETTTCC---EE--EEECCCCEEEEEEE--TTEEEEEET-TCCEEEEETTTCCEEEEECTTTTS
T ss_pred CCEEEEEe-cCcEEEEEECCCCc---EE--eeccCCCCCCceEE--CCEEEEEcC-CCeEEEEECCCCcEEEeecccCCC
Confidence 45666654 45667777765331 11 11123445677776 789998875 5679999986554432221 1122
Q ss_pred CceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec-CCcCceeEEEeccccEEEEeccceeeeee
Q psy13629 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS-TIFWPNGIAIDFNNRLLYWIDGRLTFIEV 290 (395)
Q Consensus 219 ~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~-~~~~P~glalD~~~~rLYwaD~~~~~I~~ 290 (395)
.....++. ++.||+.+. ...+...+... ......... .........+. +++||+.... +.|..
T Consensus 310 ~~~~~~~~--~~~l~v~~~--~g~l~~~d~~t--G~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~-G~l~~ 373 (376)
T 3q7m_A 310 LLTSPVLY--NGNLVVGDS--EGYLHWINVED--GRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKD-GTVYS 373 (376)
T ss_dssp CCCCCEEE--TTEEEEECT--TSEEEEEETTT--CCEEEEEECCTTCBCSCCEEE--TTEEEEEBTT-SCEEE
T ss_pred cccCCEEE--CCEEEEEeC--CCeEEEEECCC--CcEEEEEecCCCcceeCCEEE--CCEEEEEeCC-CEEEE
Confidence 23344554 688998872 35688888643 122111111 11111222333 6788888743 34443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 395 | ||||
| d1zkca1 | 178 | b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso | 3e-40 | |
| d1xwna1 | 166 | b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome | 4e-35 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 6e-32 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 5e-11 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 5e-11 | |
| d1ijqa1 | 266 | b.68.5.1 (A:377-642) Low density lipoprotein (LDL) | 4e-07 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 1e-29 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 5e-10 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 2e-07 | |
| d1npea_ | 263 | b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId | 2e-07 | |
| d2ok3a1 | 159 | b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B | 5e-29 | |
| d2b71a1 | 169 | b.62.1.1 (A:23-191) Cyclophilin-like protein PY006 | 1e-25 | |
| d2cfea1 | 162 | b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s | 3e-25 | |
| d1w74a_ | 171 | b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase | 3e-24 | |
| d1a33a_ | 174 | b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode ( | 4e-23 | |
| d1qnga_ | 170 | b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium | 1e-22 | |
| d2c3ba1 | 171 | b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper | 2e-22 | |
| d2fu0a1 | 155 | b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w { | 2e-22 | |
| d2igva1 | 172 | b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno | 1e-21 | |
| d1h0pa_ | 182 | b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd | 7e-21 | |
| d2rmca_ | 182 | b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus | 1e-20 | |
| d2a2na1 | 164 | b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma | 2e-20 | |
| d1lopa_ | 164 | b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase | 2e-20 | |
| d2z6wa1 | 164 | b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c | 2e-19 | |
| d1ihga2 | 195 | b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain | 2e-19 | |
| d1xo7a_ | 166 | b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom | 7e-19 | |
| d1qoia_ | 173 | b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom | 1e-16 | |
| d1v9ta_ | 166 | b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase | 9e-16 | |
| d2r99a1 | 161 | b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl | 1e-15 | |
| d1z81a1 | 186 | b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas | 7e-15 | |
| d2dg1a1 | 319 | b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus | 2e-04 | |
| d1pd0a4 | 173 | d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccha | 0.002 |
| >d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 139 bits (350), Expect = 3e-40
Identities = 74/101 (73%), Positives = 89/101 (88%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
GYVRL T+ G +NLEL+C++ PKTCENF++ C+ YY+GT FHRSIRNF+IQGGDPTGTG
Sbjct: 1 GYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTG 60
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
TGGES WGKPF+DEF+PN +HTGRG+LSMANSGPN+N SQ
Sbjct: 61 TGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQF 101
|
| >d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 124 bits (313), Expect = 4e-35
Identities = 63/98 (64%), Positives = 74/98 (75%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
V L TS+G I LELY PKTC+NF + GYYNGTKFHR I++FMIQGGDPTGTG G
Sbjct: 14 VYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
G SI+GK FEDE P+ TG G+L+MAN+GP+TN SQ
Sbjct: 74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQ 111
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 119 bits (299), Expect = 6e-32
Identities = 70/202 (34%), Positives = 104/202 (51%), Gaps = 9/202 (4%)
Query: 105 AYLL-----DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFD 159
AYL ++R L R + ++I +L A+D + + W+D MI D
Sbjct: 2 AYLFFTNRHEVRKMTLDRS-EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60
Query: 160 GNNVGSKH-NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDID 218
+ S + VI+ + PDGLA+DW+ +YWTDS + V+ G KRK L+ E+
Sbjct: 61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS 120
Query: 219 QPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278
+PRAI + P M+WTDWG KI++G +NG +V I WPNGI +D + L
Sbjct: 121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVTENIQWPNGITLDLLSGRL 178
Query: 279 YWIDGRLTFIEVMDYDGYVRLV 300
YW+D +L I +D +G R
Sbjct: 179 YWVDSKLHSISSIDVNGGNRKT 200
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (145), Expect = 5e-11
Identities = 31/162 (19%), Positives = 65/162 (40%), Gaps = 5/162 (3%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV 169
+ +A+ + ++ + AI + WTD GT G N +++
Sbjct: 101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK--GGLNGVDIYSL 158
Query: 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229
+T + P+G+ +D L+ +LYW DS+ + + ++G RK + ++ +L +
Sbjct: 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE 218
Query: 230 SIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAI 271
+FWTD I N ++ + P + +
Sbjct: 219 DKVFWTDIIN-EAIFS--ANRLTGSDVNLLAENLLSPEDMVL 257
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (145), Expect = 5e-11
Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 7/172 (4%)
Query: 122 VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLA 181
I +D++ + + S + WTD +S G + + P +
Sbjct: 70 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRENGSKPRAIV 126
Query: 182 IDWLTEKLYWTDSETN-KLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEV 240
+D + +YWTD T K++ L+G L E+I P I L ++W D
Sbjct: 127 VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL- 185
Query: 241 PKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMD 292
I +NG R + + + P +A+ + ++W D I +
Sbjct: 186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK--VFWTDIINEAIFSAN 235
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (115), Expect = 4e-07
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 3/101 (2%)
Query: 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185
++++ I + W D IS +G N ++ + ++
Sbjct: 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---KTILEDEKRLAHPFSLAVF 217
Query: 186 TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALV 226
+K++WTD + ++ L E++ P + L
Sbjct: 218 EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 258
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 113 bits (282), Expect = 1e-29
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 18/215 (8%)
Query: 104 GAYLL-----DIRIANLSRP-----LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMI 153
G +LL I L R + + + + +V WTD I
Sbjct: 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI 60
Query: 154 SCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY 213
+ G +I L +P+G+A+D L ++WTDS+ +++EV+ +DG +R+VL+
Sbjct: 61 GRASLHGGEP---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF 117
Query: 214 WEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAID 272
+ PR I P ++WTDW + PKIE M+G +R+++ + PNG+ D
Sbjct: 118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT--NRRILAQDNLGLPNGLTFD 175
Query: 273 FNNRLLYWIDGRLTFIEVMDYDGYVR--LVTSLGH 305
+ L W+D E ++ R ++ L +
Sbjct: 176 AFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY 210
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.6 bits (138), Expect = 5e-10
Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 10/164 (6%)
Query: 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTE--MISCCTFDGNNVGSKH 167
I +A + + V L I + + WTD + I DG N
Sbjct: 103 IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA 162
Query: 168 NVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVP 227
P+GL D + +L W D+ T++ E + R+ + E + P A+
Sbjct: 163 QDNLGL---PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-EGLQYPFAVT-SY 217
Query: 228 QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAI 271
++ ++TDW + + GI I
Sbjct: 218 GKNL-YYTDWKT-NSVIA-MDLAISKEMDTFHPHKQTRLYGITI 258
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.5 bits (117), Expect = 2e-07
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 133 AIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWT 192
+ + S +CW D GT C + GL P + + LY+T
Sbjct: 171 GLTFDAFSSQLCWVDAGTHRAECLNPAQPGR----RKVLEGLQYPFAVTSY--GKNLYYT 224
Query: 193 DSETNKLE-VSSLDGKKRKVLYWEDIDQPRAIALVPQ 228
D +TN + + K+ + + I +
Sbjct: 225 DWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.5 bits (117), Expect = 2e-07
Identities = 36/158 (22%), Positives = 53/158 (33%), Gaps = 3/158 (1%)
Query: 199 LEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVI 258
LE +++ + K +A D +++WTD E P I R + I
Sbjct: 17 LERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISE-PSIGR--ASLHGGEPTTI 73
Query: 259 VDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLVTSLGHINLELYCNVFPKT 318
+ + P GIA+D R ++W D +L IEV DG R V + P
Sbjct: 74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR 133
Query: 319 CENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
+ H N I D G G
Sbjct: 134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNG 171
|
| >d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin-like protein PPIL3B species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (271), Expect = 5e-29
Identities = 59/99 (59%), Positives = 71/99 (71%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
V L T +G I +E++C PKTCENF+ C + YYNG FHR+I+ FM+Q GDPTGTG G
Sbjct: 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
G SIWGK FEDE+ H RGV+SMAN+GPNTN SQ
Sbjct: 63 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQF 101
|
| >d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin-like protein PY00693 species: Plasmodium yoelii [TaxId: 5861]
Score = 99.5 bits (247), Expect = 1e-25
Identities = 59/100 (59%), Positives = 73/100 (73%)
Query: 295 GYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTG 354
GY+ + T+LG +ELY PKTC NF CE G+Y+ T FHR I NF+IQGGDPTGTG
Sbjct: 17 GYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTG 76
Query: 355 TGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GG+SI+G+ FEDE HTG G+LSM+N+GPNTN+SQ
Sbjct: 77 KGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQ 116
|
| >d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin-like allergen Mal s 6 species: Malassezia sympodialis [TaxId: 76777]
Score = 98.2 bits (244), Expect = 3e-25
Identities = 49/98 (50%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCENG---YYNGTKFHRSIRNFMIQGGDPT-GTGTG 356
LG I +L+ +V PKT NF C Y G+ FHR I +FM+QGGD T G GTG
Sbjct: 13 APLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTG 72
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
G+SI+G F DE H G+LSMAN+GPNTN SQ
Sbjct: 73 GKSIYGAKFADEN-FQLKHNKPGLLSMANAGPNTNGSQ 109
|
| >d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidyl-prolyl cis-trans isomerase A, PpiA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 96.1 bits (238), Expect = 3e-24
Identities = 46/113 (40%), Positives = 57/113 (50%), Gaps = 18/113 (15%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENG---------------YYNGTKFHRSIR 341
L T+ G I + L+ N PKT NF+ + +Y+G FHR I+
Sbjct: 6 ATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQ 65
Query: 342 NFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
FMIQGGDPTGTG GG F DEF P +L+MAN+GP TN SQ
Sbjct: 66 GFMIQGGDPTGTGRGGPGYK---FADEFHPELQFDKPYLLAMANAGPGTNGSQ 115
|
| >d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Nematode (Brugia malayi) [TaxId: 6279]
Score = 93.3 bits (231), Expect = 4e-23
Identities = 51/107 (47%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCEN-----------GYYNGTKFHRSIRNFMIQGGD 349
G I +ELY ++ P+TC NF+ C +Y G+ FHR I+NFMIQGGD
Sbjct: 15 NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGD 74
Query: 350 PT-GTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
T G GTGGESI+G F+DE H V+SMAN GPNTN SQ
Sbjct: 75 FTKGDGTGGESIYGGMFDDEE-FVMKHDEPFVVSMANKGPNTNGSQF 120
|
| >d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Plasmodium falciparum [TaxId: 5833]
Score = 91.8 bits (227), Expect = 1e-22
Identities = 48/104 (46%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 301 TSLGHINLELYCNVFPKTCENF---------MKHCENGYYNGTKFHRSIRNFMIQGGDP- 350
++ G I EL+ ++ P+TCENF +N +Y + FHR I FM QGGD
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 351 TGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
G G+GGESI+G+ F DE N H G+LSMAN+GPNTN+SQ
Sbjct: 75 NGNGSGGESIYGRSFTDEN-FNMKHDQPGLLSMANAGPNTNSSQ 117
|
| >d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Aspergillus fumigatus [TaxId: 5085]
Score = 91.5 bits (226), Expect = 2e-22
Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 291 MDYDGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGY---YNGTKFHRSIRNFMIQG 347
++Y T +G I L+ PKT +NF + C+ Y + FHR I NFMIQG
Sbjct: 8 VEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQG 67
Query: 348 GDP-TGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GD G GTGG SI+G F D + H +G+LSMAN+GPNTN SQ
Sbjct: 68 GDFTRGNGTGGRSIYGDKFAD-ENFSRKHDKKGILSMANAGPNTNGSQ 114
|
| >d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Putative cyclophilin PFE0505w species: Plasmodium falciparum [TaxId: 5833]
Score = 90.8 bits (224), Expect = 2e-22
Identities = 51/98 (52%), Positives = 66/98 (67%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
+ T++G I++ L+ KT +NF H NGYYN FHR I++FM+Q GDP+G GTG
Sbjct: 4 AIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTG 63
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GESIWG FEDEF + H+ ++SMAN GPNTN SQ
Sbjct: 64 GESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQ 101
|
| >d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]
Score = 89.1 bits (220), Expect = 1e-21
Identities = 51/103 (49%), Positives = 60/103 (58%), Gaps = 12/103 (11%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCEN----------GYYNGTKFHRSIRNFMIQGGDP 350
+ G I +ELY +V PKT NF C ++ G+KFHR I NFMIQGGD
Sbjct: 15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDF 74
Query: 351 -TGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNT 392
G GTGGESI+G+ F DE G GVLSMAN+GPNTN
Sbjct: 75 TRGNGTGGESIYGEKFPDENFKEKHT-GPGVLSMANAGPNTNG 116
|
| >d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]
Score = 87.2 bits (215), Expect = 7e-21
Identities = 46/98 (46%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCE---NGYYNGTKFHRSIRNFMIQGGDPT-GTGTG 356
+G I + L+ PKT NF++ + Y G+KFHR I +FMIQGGD T G GTG
Sbjct: 18 KPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTG 77
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
G SI+G+ F DE + G G LSMAN+G +TN SQ
Sbjct: 78 GRSIYGEKFADENFKLKHY-GAGWLSMANAGADTNGSQ 114
|
| >d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Mouse (Mus musculus), variant C [TaxId: 10090]
Score = 86.4 bits (213), Expect = 1e-20
Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCENG---YYNGTKFHRSIRNFMIQGGDPT-GTGTG 356
+G I + L+ NV PKT ENF+ Y G+ FHR I++FMIQGGD T GTG
Sbjct: 19 KDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTG 78
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
G SI+G+ F DE + G G +SMAN+GP+TN SQ
Sbjct: 79 GMSIYGETFPDENFKLKHY-GIGWVSMANAGPDTNGSQ 115
|
| >d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.4 bits (210), Expect = 2e-20
Identities = 57/98 (58%), Positives = 64/98 (65%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
+ TS+G I+ +L+ PKT ENF H NGYYNG FHR I+ FMIQ GDPTGTG G
Sbjct: 12 AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMG 71
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
GESIWG FEDEF H LSMAN+G NTN SQ
Sbjct: 72 GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQ 109
|
| >d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidyl-prolyl cis-trans isomerase A, PpiA species: Escherichia coli [TaxId: 562]
Score = 85.3 bits (210), Expect = 2e-20
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
V T+ G I ++ + + P+T +NF+ +C G+YN T FHR I FMIQGG
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
+P ++E +T + P++ T+Q
Sbjct: 62 K--ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQ 97
|
| >d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.6 bits (203), Expect = 2e-19
Identities = 49/98 (50%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCENGY---YNGTKFHRSIRNFMIQGGD-PTGTGTG 356
LG + LEL +V PKT ENF C Y G+ FHR I +FM Q GD GTG
Sbjct: 14 KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTG 73
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
G+SI+G F D H G GVLSMAN+GPNTN SQ
Sbjct: 74 GKSIYGSRFPD-ENFTLKHVGPGVLSMANAGPNTNGSQ 110
|
| >d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin 40 isomerase domain species: Cow (Bos taurus) [TaxId: 9913]
Score = 83.0 bits (204), Expect = 2e-19
Identities = 50/107 (46%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCEN-----------GYYNGTKFHRSIRNFMIQGGD 349
+G I LEL+ ++ PKT ENF C ++ G FHR I+ FMIQGGD
Sbjct: 26 ERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGD 85
Query: 350 -PTGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
GTGGESI+G+ FEDE +Y H G+LSMAN+G NTN SQ
Sbjct: 86 FSNQNGTGGESIYGEKFEDEN-FHYKHDKEGLLSMANAGSNTNGSQF 131
|
| >d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Trypanosoma cruzi [TaxId: 5693]
Score = 81.0 bits (199), Expect = 7e-19
Identities = 44/98 (44%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHC---ENGYYNGTKFHRSIRNFMIQGGDPT-GTGTG 356
+G + + L+ N PKT ENF + Y G+ FHR IRNFMIQGGD T GTG
Sbjct: 17 EPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTG 76
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
G+SI+G F + + G +SMAN+GPN+N SQ
Sbjct: 77 GKSIYGTRF--DDENLKIKHFVGAVSMANAGPNSNGSQ 112
|
| >d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
Score = 74.9 bits (183), Expect = 1e-16
Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCENGY--------YNGTKFHRSIRNFMIQGGDPT- 351
+G + +EL+ +V PKT ENF + C + Y G+ FHR I++FMIQGGD
Sbjct: 18 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVN 77
Query: 352 GTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
G GTG SI+ PF DE H+ G+LSMANSGP+TN Q
Sbjct: 78 GDGTGVASIYRGPFADEN-FKLRHSAPGLLSMANSGPSTNGCQ 119
|
| >d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidyl-prolyl cis-trans isomerase A, PpiA species: Escherichia coli [TaxId: 562]
Score = 72.3 bits (176), Expect = 9e-16
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTG 356
V L TS G+I LEL P + +NF+ + +G+YN T FHR I FMIQGG T
Sbjct: 7 VLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ 66
Query: 357 GESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
P ++E +T + + ++ TSQ
Sbjct: 67 K--KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQ 102
|
| >d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.2 bits (176), Expect = 1e-15
Identities = 41/97 (42%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHC---ENGYYNGTKFHRSIRNFMIQGGDPTGTGTGG 357
G I + L +V P T ENF C + + G+ FHR I FM QGGD T G
Sbjct: 13 KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTG 72
Query: 358 ESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQ 394
D+ HTG G+LSMANSGPNTN SQ
Sbjct: 73 GKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 109
|
| >d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Plasmodium yoelii [TaxId: 5861]
Score = 70.3 bits (171), Expect = 7e-15
Identities = 42/103 (40%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 301 TSLGHINLELYCNVFPKTCENFMKHCENGY--------YNGTKFHRSIRNFMIQGGDPTG 352
LG EL+ N+ PKT ENF + C Y Y T FHR I+ FMIQGGD
Sbjct: 28 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFIN 87
Query: 353 TGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395
G D+ + H G+LSMANSGPNTN Q
Sbjct: 88 HNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQF 130
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 26/223 (11%), Positives = 57/223 (25%), Gaps = 9/223 (4%)
Query: 170 ITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQD 229
I+ + +GL D +L+ D + + + K+ K + P AI +
Sbjct: 35 ISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG 93
Query: 230 S--IMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTF 287
+ + D+ I NGD + ST + + + D + +
Sbjct: 94 RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST 153
Query: 288 IEVMDYDGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQG 347
+ S + + E + + ++
Sbjct: 154 NPLGGVYYV-----SPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 208
Query: 348 GDPTGTGTGGESIWGKPFEDEFKPNYTHTGRGVLSMANSGPNT 390
T G + + + L +A G
Sbjct: 209 DGVTIQPFGATIPYYFTGHEGPD-SCCIDSDDNLYVAMYGQGR 250
|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Gelsolin-like superfamily: C-terminal, gelsolin-like domain of Sec23/24 family: C-terminal, gelsolin-like domain of Sec23/24 domain: Sec24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.9 bits (85), Expect = 0.002
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 14/50 (28%)
Query: 74 PHLISLHVIDPNSDE--------------MPVQERCSFEKLQPDGAYLLD 109
P + SLH + + +P + + G YL+D
Sbjct: 1 PDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLID 50
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 395 | |||
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.95 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.94 | |
| d2ok3a1 | 159 | Cyclophilin-like protein PPIL3B {Human (Homo sapie | 99.8 | |
| d1zkca1 | 178 | Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop | 99.79 | |
| d1xwna1 | 166 | Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 | 99.78 | |
| d2fu0a1 | 155 | Putative cyclophilin PFE0505w {Plasmodium falcipar | 99.78 | |
| d2b71a1 | 169 | Cyclophilin-like protein PY00693 {Plasmodium yoeli | 99.77 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.75 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.74 | |
| d1v9ta_ | 166 | Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche | 99.7 | |
| d1lopa_ | 164 | Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche | 99.7 | |
| d2cfea1 | 162 | Cyclophilin-like allergen Mal s 6 {Malassezia symp | 99.68 | |
| d2a2na1 | 164 | Peptidylprolyl isomerase domain and WD repeat-cont | 99.68 | |
| d2r99a1 | 161 | Mitochondrial peptidyl-prolyl cis-trans isomerase, | 99.68 | |
| d2z6wa1 | 164 | Mitochondrial peptidyl-prolyl cis-trans isomerase, | 99.67 | |
| d1w74a_ | 171 | Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob | 99.66 | |
| d2igva1 | 172 | Cyclophilin (eukaryotic) {Caenorhabditis elegans, | 99.65 | |
| d1qnga_ | 170 | Cyclophilin (eukaryotic) {Plasmodium falciparum [T | 99.65 | |
| d2rmca_ | 182 | Cyclophilin (eukaryotic) {Mouse (Mus musculus), va | 99.65 | |
| d2c3ba1 | 171 | Cyclophilin (eukaryotic) {Aspergillus fumigatus [T | 99.64 | |
| d1h0pa_ | 182 | Cyclophilin (eukaryotic) {Caenorhabditis elegans, | 99.63 | |
| d1xo7a_ | 166 | Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId | 99.62 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.62 | |
| d1qoia_ | 173 | Cyclophilin (eukaryotic) {Human (Homo sapiens), U4 | 99.62 | |
| d1z81a1 | 186 | Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId | 99.61 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.61 | |
| d1a33a_ | 174 | Cyclophilin (eukaryotic) {Nematode (Brugia malayi) | 99.59 | |
| d1ihga2 | 195 | Cyclophilin 40 isomerase domain {Cow (Bos taurus) | 99.58 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.55 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.52 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.44 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.42 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.39 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.24 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.17 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.15 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.13 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.05 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.03 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.0 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.9 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.75 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.64 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.61 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.54 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.39 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.3 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 98.13 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.07 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.07 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.0 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 97.82 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.75 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.7 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.7 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.68 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.51 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.47 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 97.46 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 97.44 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.44 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.39 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.26 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.18 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.16 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.11 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 97.08 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 96.96 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 96.9 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.85 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.85 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 96.58 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.4 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.26 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 95.91 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.81 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 95.39 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 95.38 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 95.22 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.06 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.83 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.43 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 93.99 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 93.85 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 93.75 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 93.35 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 92.92 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 92.88 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 89.58 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 87.0 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 86.41 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 86.34 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 84.58 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 84.54 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 83.73 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 82.55 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 82.03 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 80.78 |
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.8e-36 Score=278.38 Aligned_cols=221 Identities=33% Similarity=0.631 Sum_probs=192.9
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC-CceEEEEeCCCCCcceEEEecCC
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-GSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~-~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
++|+++++++ .++..+.++.+++.||+||+.+++|||+|...+.|+++.+++... ...++++..++..|.||||||.+
T Consensus 10 ~~I~~~~l~~-~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~ 88 (266)
T d1ijqa1 10 HEVRKMTLDR-SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (266)
T ss_dssp SSEEEEETTS-CCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCC-CcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence 4799999998 677788899999999999999999999999999999999997532 23456777788999999999999
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
++|||+|...++|++++++|..+..++.....+|++|++||.+|+|||++|+..++|+|++||| ++++.++..++.+|
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG--s~~~~l~~~~~~~p 166 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYSLVTENIQWP 166 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CCEEEEECSSCSCE
T ss_pred ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC--Cceeccccccccee
Confidence 9999999999999999999999998888889999999999999999999999888999999999 88999998889999
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccceeee--ee---ecee-eeeeeeccCCccccceeeeeccceecceeEEEEe
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV--TS---LGHI-NLELYCNVFPKTCENFMKHCENGYYNGTKFHRSI 340 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~--t~---~g~~-~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~ 340 (395)
+||++|+.+++|||+|...++|++++++|..+.. .. +.+| +++++ ++..||.++
T Consensus 167 ~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--------------------~~~ly~td~ 226 (266)
T d1ijqa1 167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--------------------EDKVFWTDI 226 (266)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--------------------TTEEEEEET
T ss_pred eEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--------------------CCEEEEEEC
Confidence 9999999999999999999999999999988755 11 2344 67766 788999998
Q ss_pred cCcEEEecCCC
Q psy13629 341 RNFMIQGGDPT 351 (395)
Q Consensus 341 ~~~~iq~g~~~ 351 (395)
....|...++.
T Consensus 227 ~~~~I~~~~~~ 237 (266)
T d1ijqa1 227 INEAIFSANRL 237 (266)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEEECC
Confidence 88888776654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-34 Score=269.88 Aligned_cols=219 Identities=25% Similarity=0.452 Sum_probs=192.8
Q ss_pred EEEEEeeCCCCCc-----cEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEE
Q psy13629 108 LDIRIANLSRPLK-----PVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAI 182 (395)
Q Consensus 108 ~~I~~~~l~~~~~-----~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAV 182 (395)
..|+++++++... ...+....+.+.|||||+.+++|||+|...+.|+++.++|+ ..++++..++..|.||||
T Consensus 10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~---~~~~v~~~~~~~p~~iAv 86 (263)
T d1npea_ 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG---EPTTIIRQDLGSPEGIAL 86 (263)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC---CCEEEECTTCCCEEEEEE
T ss_pred CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccC---CcEEEEEeccccccEEEE
Confidence 4888888887321 12344455678999999999999999999999999999997 567778778899999999
Q ss_pred ecCCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEec
Q psy13629 183 DWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 183 D~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
||.+++|||+|...++|.+++++|+.+++++...+..|++|++||.+|+|||++|+ ..++|+|++||| .+++.++..
T Consensus 87 D~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG--~~~~~i~~~ 164 (263)
T d1npea_ 87 DHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TNRRILAQD 164 (263)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CCCEEEECT
T ss_pred eccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC--CCceeeeee
Confidence 99999999999999999999999999999987788999999999999999999988 467899999999 888899988
Q ss_pred CCcCceeEEEeccccEEEEeccceeeeeeeccccceeee--eeecee-eeeeeeccCCccccceeeeeccceecceeEEE
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV--TSLGHI-NLELYCNVFPKTCENFMKHCENGYYNGTKFHR 338 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~--t~~g~~-~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r 338 (395)
++.+|+||++|..+++|||+|...++|++++++|..++. ..+.+| ++++| ++..||.
T Consensus 165 ~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--------------------~~~lYwt 224 (263)
T d1npea_ 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--------------------GKNLYYT 224 (263)
T ss_dssp TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--------------------TTEEEEE
T ss_pred cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--------------------CCEEEEE
Confidence 999999999999999999999999999999999998876 455566 77766 7899999
Q ss_pred EecCcEEEecCCC
Q psy13629 339 SIRNFMIQGGDPT 351 (395)
Q Consensus 339 ~~~~~~iq~g~~~ 351 (395)
++.+..|.--++.
T Consensus 225 d~~~~~I~~~~~~ 237 (263)
T d1npea_ 225 DWKTNSVIAMDLA 237 (263)
T ss_dssp ETTTTEEEEEETT
T ss_pred ECCCCEEEEEECC
Confidence 9998888877764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=7.9e-27 Score=217.09 Aligned_cols=182 Identities=24% Similarity=0.404 Sum_probs=159.9
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+++++++....+++..++..|.+||+|+.+++|||+|...++|.+++++|. ..++++...+..|.+|+||+.++.
T Consensus 59 ~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~---~~~~l~~~~l~~p~~l~vdp~~g~ 135 (263)
T d1npea_ 59 SIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---QRRVLFDTGLVNPRGIVTDPVRGN 135 (263)
T ss_dssp EEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEETTTTE
T ss_pred eEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc---eEEEEecccccCCcEEEEecccCc
Confidence 68999999855566666788899999999999999999999999999999997 556677778899999999999999
Q ss_pred EEEEeCCC--CeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 189 LYWTDSET--NKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 189 LYwtd~~~--~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
|||++.+. .+|+++++||..++.++..++..|+||++|+.+++|||+|.+ ..+|++++++| ..+++++. .+..|
T Consensus 136 ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~-~~~I~~~~~~g--~~~~~v~~-~~~~P 211 (263)
T d1npea_ 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG-THRAECLNPAQ--PGRRKVLE-GLQYP 211 (263)
T ss_dssp EEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTE--EEEEEEEE-CCCSE
T ss_pred EEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCC-CCEEEEEECCC--CCeEEEEC-CCCCc
Confidence 99999753 469999999999999988889999999999999999999944 78999999999 77776664 46789
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
.||+++ +++|||+|+..++|.+++..+....
T Consensus 212 ~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 212 FAVTSY--GKNLYYTDWKTNSVIAMDLAISKEM 242 (263)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEE--CCEEEEEECCCCEEEEEECCCCccc
Confidence 999998 8999999999999999998754443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.7e-25 Score=206.98 Aligned_cols=196 Identities=21% Similarity=0.303 Sum_probs=161.4
Q ss_pred EEEEeeCCCC----CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec
Q psy13629 109 DIRIANLSRP----LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~----~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~ 184 (395)
.|.+.++++. ...+.+......+.|||+|+.+++|||+|...++|.+++++|. ....++......|.+|+||+
T Consensus 53 ~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~---~~~~~~~~~~~~P~~l~vd~ 129 (266)
T d1ijqa1 53 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDP 129 (266)
T ss_dssp EEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEET
T ss_pred EEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCc---eEEEEEcCCCCCcceEEEEc
Confidence 5777777652 2344566778899999999999999999999999999999997 56677778889999999999
Q ss_pred CCCeEEEEeCC-CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC-
Q psy13629 185 LTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST- 262 (395)
Q Consensus 185 ~~~~LYwtd~~-~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~- 262 (395)
..|.|||++.. ..+|+++++||+.+++++...+..|+||++|+.+++|||+|.. ..+|+++++|| .+++.++...
T Consensus 130 ~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~-~~~I~~~~~dG--~~~~~~~~~~~ 206 (266)
T d1ijqa1 130 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNG--GNRKTILEDEK 206 (266)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTS--CSCEEEEECTT
T ss_pred ccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCC-cCEEEEEECCC--CCEEEEEeCCC
Confidence 99999999965 4589999999999999997889999999999999999999944 78999999999 7777776653
Q ss_pred -CcCceeEEEeccccEEEEeccceeeeeeecccc-ceeee--eeecee-eeeeee
Q psy13629 263 -IFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG-YVRLV--TSLGHI-NLELYC 312 (395)
Q Consensus 263 -~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG-~~~~~--t~~g~~-~i~Lf~ 312 (395)
+..|.||+++ +++|||+|+..++|.+++..+ ..... .....+ ++.+|.
T Consensus 207 ~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~ 259 (266)
T d1ijqa1 207 RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFH 259 (266)
T ss_dssp TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEES
T ss_pred cccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEEEEEC
Confidence 5578888888 789999999999999998544 43332 334445 677663
|
| >d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin-like protein PPIL3B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.1e-20 Score=161.95 Aligned_cols=98 Identities=59% Similarity=1.100 Sum_probs=91.4
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..+|+.|.+.++||.+.+|.+++||++||+.+||+++.|||++++++||+||+...+.++...++..+++|..+.++|++
T Consensus 4 ~~~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 83 (159)
T d2ok3a1 4 TLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNV 83 (159)
T ss_dssp EEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCCSCS
T ss_pred EEEeCCeEEEEEEcCCCChHHHHHHHHHHhhhcccceeEecccCCeEEEeCCccccCCCCcccCCCccccccccCCCCCC
Confidence 34578999999999999999999999999999999999999999999999999877777788888899999888899999
Q ss_pred CeEEEeecCCCCCCCCCC
Q psy13629 378 RGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~~~~~~sqf 395 (395)
+|+||||+.+||++||||
T Consensus 84 ~G~lsma~~~~~s~~sqF 101 (159)
T d2ok3a1 84 RGVVSMANNGPNTNGSQF 101 (159)
T ss_dssp TTEEEECCSSTTCBCSCE
T ss_pred CeEEEEeeCCCCCcCcce
Confidence 999999999999999998
|
| >d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.1e-20 Score=162.97 Aligned_cols=100 Identities=73% Similarity=1.319 Sum_probs=94.2
Q ss_pred ceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCC
Q psy13629 296 YVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTH 375 (395)
Q Consensus 296 ~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~ 375 (395)
..+..|+.|.+.++||.+.+|.+++||+.||+.+||+|+.|||+++++++|+|+....|.++...++..+++|..+.++|
T Consensus 2 ~v~l~T~~G~i~IeL~~~~aP~tv~nF~~L~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~E~~~~l~~ 81 (178)
T d1zkca1 2 YVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEFRPNLSH 81 (178)
T ss_dssp EEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSCBCCCCCTTCCS
T ss_pred EEEEEeCCEEEEEEEcCCCChHHHHHHHHHHhcCCcCceEeeeccceeEEecCCccCCCCCCcccCCCCcCCccccccCC
Confidence 34566899999999999999999999999999999999999999999999999998888888888899999998888999
Q ss_pred CCCeEEEeecCCCCCCCCCC
Q psy13629 376 TGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 376 ~~~G~l~ma~~~~~~~~sqf 395 (395)
+.+|+||||+.++|++||||
T Consensus 82 ~~~G~lsma~~~~~s~~sqF 101 (178)
T d1zkca1 82 TGRGILSMANSGPNSNRSQF 101 (178)
T ss_dssp CSTTEEEECCSSTTCBCSCE
T ss_pred CCCeEEEEeecCCCCcccee
Confidence 99999999999999999998
|
| >d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.3e-20 Score=162.52 Aligned_cols=98 Identities=63% Similarity=1.080 Sum_probs=92.8
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..+|+.|.+.++||.+.+|.+++||+.||+.+||+++.|||++++|++|+|++.+.+.++..+++..+++|..+.+.|+.
T Consensus 15 ~~~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 94 (166)
T d1xwna1 15 YLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTG 94 (166)
T ss_dssp EEEESSCEEEEEECTTTCHHHHHHHHHHHHHTSSTTCCEEEEETTTEEEECCSTTTTSSCCCSSCSCCCCCCCTTCCSCS
T ss_pred EEEECceeEEEEEcCCCChHHHHHHHHHHhcCCcCceeeeEEcccEEEEeCCCCCCCCCCccCCCCccccccCCCCCCCC
Confidence 34488999999999999999999999999999999999999999999999999988888999999999999888899999
Q ss_pred CeEEEeecCCCCCCCCCC
Q psy13629 378 RGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~~~~~~sqf 395 (395)
+|+|||++.+||+++|||
T Consensus 95 ~G~lsm~~~~~~s~~sqF 112 (166)
T d1xwna1 95 AGILAMANAGPDTNGSQF 112 (166)
T ss_dssp SSEEEEEEEETTEEEEEE
T ss_pred CeEEEecccCCCCCCcce
Confidence 999999999999999998
|
| >d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Putative cyclophilin PFE0505w species: Plasmodium falciparum [TaxId: 5833]
Probab=99.78 E-value=2.9e-20 Score=158.58 Aligned_cols=98 Identities=52% Similarity=0.899 Sum_probs=93.1
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..+|++|.+.++||.+.||.+++||++||+++||+|+.|||+++++++|+|++.+.+.++++.++..+++|....++|.+
T Consensus 5 ~i~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (155)
T d2fu0a1 5 IIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFDHLNHSK 84 (155)
T ss_dssp EEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBTTBCSSS
T ss_pred EEEEcccEEEEEEcCCCChHHHHHHhhHhhCCccccceeeeeeecceeeccCCCCCCcCCcccCCCccccccccccccCC
Confidence 34589999999999999999999999999999999999999999999999999988888999999999999888899999
Q ss_pred CeEEEeecCCCCCCCCCC
Q psy13629 378 RGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~~~~~~~sqf 395 (395)
+|+++|++.+||+++|||
T Consensus 85 ~~~~~~~~~~~~s~~sqF 102 (155)
T d2fu0a1 85 PFMVSMANCGPNTNGSQF 102 (155)
T ss_dssp SSEEEECCSSTTCBCSCE
T ss_pred ccEEEecccCCCCCCccc
Confidence 999999999999999998
|
| >d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin-like protein PY00693 species: Plasmodium yoelii [TaxId: 5861]
Probab=99.77 E-value=6.7e-20 Score=158.47 Aligned_cols=102 Identities=58% Similarity=1.037 Sum_probs=94.3
Q ss_pred ccceeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCC
Q psy13629 294 DGYVRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNY 373 (395)
Q Consensus 294 dG~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~ 373 (395)
.+.....|+.|.+.++||.+.+|.+++||+.||+.+||+++.|||+++++++|+|++.+.+.++..+.+..+++|..+.+
T Consensus 16 ~~~V~l~T~~G~i~IeL~~d~aP~tv~nF~~L~~~g~Y~~~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~e~~~~l 95 (169)
T d2b71a1 16 RGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKEL 95 (169)
T ss_dssp SCEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSCCCBTTBSCBCCCCCTTC
T ss_pred ccEEEEEeCceeEEEEEeCCCCcHHHHHHHHHhhCCccceeeeccccceeeEeccccccccCCCcccccccccccccccc
Confidence 34455568999999999999999999999999999999999999999999999999988888888888888999988889
Q ss_pred CCCCCeEEEeecCCCCCCCCCC
Q psy13629 374 THTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 374 ~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+|.++|+|||++.+||+++|||
T Consensus 96 ~h~~~g~ls~~~~~p~s~~sqF 117 (169)
T d2b71a1 96 KHTGAGILSMSNNGPNTNSSQF 117 (169)
T ss_dssp CCCSTTEEEECCSSTTCBSSCE
T ss_pred CCCCcEEEEhhhCCCCCCCCEE
Confidence 9999999999999999999998
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=3e-17 Score=150.75 Aligned_cols=208 Identities=17% Similarity=0.183 Sum_probs=152.9
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|.+++..+.............|.|+++++. ++|||+|...+.|. ...++. .........+..|.+||+|+ .++
T Consensus 37 ~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~-g~i~v~d~~~~~i~-~~~~~~---~~~~~~~~~~~~p~~iavd~-~g~ 110 (260)
T d1rwia_ 37 RVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-GTVYVTDFNNRVVT-LAAGSN---NQTVLPFDGLNYPEGLAVDT-QGA 110 (260)
T ss_dssp EEEEEC----CEEECCCCSCCSCCCEEECTT-CCEEEEETTTEEEE-ECTTCS---CCEECCCCSCCSEEEEEECT-TCC
T ss_pred EEEEEcCCCceEEEeccCCccCceEEEEcCC-CCEEEeeeeeceee-eeeecc---ceeeeeeeeeeecccccccc-cce
Confidence 4555555543333333455778999999976 56999997765554 433443 33444455678899999998 778
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
|||+|..++++.+.+.++..........+..|++|++++ ++.+|++++. ..+|.+++.+| ....++....+.+|+|
T Consensus 111 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~-~~~i~~~d~~~--~~~~~~~~~~~~~p~g 186 (260)
T d1rwia_ 111 VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTD-NNRVVKLEAES--NNQVVLPFTDITAPWG 186 (260)
T ss_dssp EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGG-GTEEEEECTTT--CCEEECCCSSCCSEEE
T ss_pred eEeeccccccccccccccceeeeeeecccCCcceeeecC-CCCEeeeccc-ccccccccccc--ceeeeeeccccCCCcc
Confidence 999999999999999999887776657789999999998 5679999976 67999999998 5666666677889999
Q ss_pred EEEeccccEEEEeccceeeeeeeccccceeee---eeecee-eeeeeeccCCccccceeeeeccceecceeEEEEecCcE
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV---TSLGHI-NLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFM 344 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~---t~~g~~-~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~ 344 (395)
|++|. +++|||+|...++|.+++.++..... ..+..| .+++.. +|..|...+.+..
T Consensus 187 i~~d~-~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~-------------------~g~l~vad~~~~r 246 (260)
T d1rwia_ 187 IAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-------------------DRTVYVADRGNDR 246 (260)
T ss_dssp EEECT-TCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECT-------------------TCCEEEEEGGGTE
T ss_pred ceeee-eeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeC-------------------CCCEEEEECCCCE
Confidence 99994 57899999999999999998876655 223344 555441 3556666666655
Q ss_pred EE
Q psy13629 345 IQ 346 (395)
Q Consensus 345 iq 346 (395)
|+
T Consensus 247 I~ 248 (260)
T d1rwia_ 247 VV 248 (260)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=3.4e-17 Score=150.36 Aligned_cols=168 Identities=18% Similarity=0.230 Sum_probs=138.6
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCe
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNK 198 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~ 198 (395)
............|.++++|+.+ +|||+|..++++.++..++. .........+..|.+|++|. .+++|+++...++
T Consensus 88 ~~~~~~~~~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~ 162 (260)
T d1rwia_ 88 NQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSK---TQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNR 162 (260)
T ss_dssp CCEECCCCSCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCS---SCEECCCCSCCSCCEEEECT-TCCEEEEEGGGTE
T ss_pred ceeeeeeeeeeecccccccccc-eeEeeccccccccccccccc---eeeeeeecccCCcceeeecC-CCCEeeecccccc
Confidence 3333445567889999999854 69999998999999988875 33444456788999999998 6789999999999
Q ss_pred EEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEE
Q psy13629 199 LEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLL 278 (395)
Q Consensus 199 I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rL 278 (395)
|.+++.++..+..+....+..|.||++|+ +|.|||+|++ ..+|.++..++ ...+++....+..|.+|++|. +++|
T Consensus 163 i~~~d~~~~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~-~~~i~~~~~~~--~~~~~~~~~~~~~P~~i~~d~-~g~l 237 (260)
T d1rwia_ 163 VVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHN-TNQVVKLLAGS--TTSTVLPFTGLNTPLAVAVDS-DRTV 237 (260)
T ss_dssp EEEECTTTCCEEECCCSSCCSEEEEEECT-TCCEEEEETT-TTEEEEECTTC--SCCEECCCCSCCCEEEEEECT-TCCE
T ss_pred ccccccccceeeeeeccccCCCccceeee-eeeeeeeecC-CCEEEEEeCCC--CeEEEEccCCCCCeEEEEEeC-CCCE
Confidence 99999999988776657789999999998 5789999976 78899999998 566666566778999999995 4689
Q ss_pred EEeccceeeeeeeccccc
Q psy13629 279 YWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 279 YwaD~~~~~I~~~~~dG~ 296 (395)
||+|++.++|.+++..+.
T Consensus 238 ~vad~~~~rI~~i~~~~~ 255 (260)
T d1rwia_ 238 YVADRGNDRVVKLTSLEH 255 (260)
T ss_dssp EEEEGGGTEEEEECCCGG
T ss_pred EEEECCCCEEEEEeCCCC
Confidence 999999999998887654
|
| >d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidyl-prolyl cis-trans isomerase A, PpiA species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.8e-18 Score=147.74 Aligned_cols=95 Identities=38% Similarity=0.565 Sum_probs=81.7
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTG 377 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 377 (395)
..+|+.|.+.++||.+.+|.+++||++||+.+||+|+.|||++++|++|+|+.... .+...++..+++|....++|.
T Consensus 8 ~l~T~~G~i~ieL~~~~aP~tv~nF~~L~~~~~Y~g~~fhRv~~~~~iq~G~~~~~--~~~~~~~~~~~~e~~~~~~~~- 84 (166)
T d1v9ta_ 8 LLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQ--MQQKKPNPPIKNEADNGLRNT- 84 (166)
T ss_dssp EEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTT--CCBCCCCCCBCCCGGGSCCCC-
T ss_pred EEEECCeeEEEEEeCCCChHHHHHHHHHhhCCccccceeeEEEEEeecccCCcCCc--ccccCCCCCcccccccccccc-
Confidence 34488999999999999999999999999999999999999999999999997532 222345778889977777776
Q ss_pred CeEEEeecC-CCCCCCCCC
Q psy13629 378 RGVLSMANS-GPNTNTSQL 395 (395)
Q Consensus 378 ~G~l~ma~~-~~~~~~sqf 395 (395)
+|+|+|++. +||+++|||
T Consensus 85 rg~v~~~~~~~~~s~~sqF 103 (166)
T d1v9ta_ 85 RGTIAMARTADKDSATSQF 103 (166)
T ss_dssp TTEEEECCCSSTTCBCSCE
T ss_pred CCEEEEEeeecCCCccccc
Confidence 999999975 599999998
|
| >d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidyl-prolyl cis-trans isomerase A, PpiA species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.8e-18 Score=148.75 Aligned_cols=94 Identities=35% Similarity=0.624 Sum_probs=80.5
Q ss_pred eeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q psy13629 299 LVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHTGR 378 (395)
Q Consensus 299 ~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~ 378 (395)
.+|+.|.+.++||.+.+|.|++||++||+.+||+|+.|||++++|++|+|+...... ....+.++++|....++|. +
T Consensus 4 l~T~~G~i~ieL~~~~aP~t~~nF~~l~~~g~Y~g~~fhrv~~~~~iq~G~~~~~~~--~~~~~~~~~~e~~~~~~h~-~ 80 (164)
T d1lopa_ 4 FHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMK--QKATKEPIKNEANNGLKNT-R 80 (164)
T ss_dssp EEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETTTE--ECCCCCCBCCCCCSSCCCC-T
T ss_pred EEeCCeEEEEEEcCCCCHHHHHHHHHHHHccCcCCceeeEEcCCceeeeeccccCCc--CCccCCCccccccccccce-e
Confidence 458899999999999999999999999999999999999999999999998652222 1224677888877788776 8
Q ss_pred eEEEeecC-CCCCCCCCC
Q psy13629 379 GVLSMANS-GPNTNTSQL 395 (395)
Q Consensus 379 G~l~ma~~-~~~~~~sqf 395 (395)
|+|+||+. +|+++||||
T Consensus 81 g~l~~~~~~~~~~~~sqF 98 (164)
T d1lopa_ 81 GTLAMARTQAPHSATAQF 98 (164)
T ss_dssp TEEEECCCSSTTCBCSCE
T ss_pred eEEEEeccCCCCCcccee
Confidence 99999976 699999998
|
| >d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin-like allergen Mal s 6 species: Malassezia sympodialis [TaxId: 76777]
Probab=99.68 E-value=5.5e-18 Score=145.27 Aligned_cols=94 Identities=52% Similarity=0.895 Sum_probs=84.5
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccce---ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENGY---YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~---y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+.+|.+.++||++.+|.+++||+.||+.++ |+++.|||+++++++|+|++. +.+.++...++..+.+| .+.++|+
T Consensus 13 ~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e-~~~~~h~ 91 (162)
T d2cfea1 13 APLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADE-NFQLKHN 91 (162)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EEeeEEEEEEcCCCChHHHHHHHHHHhhccCCccCCCEEEEEEecceEecCCCCCCCCCCCcccCCCccccc-cCCCCCC
Confidence 467889999999999999999999999885 999999999999999999976 55666777778888888 4578898
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
.+|+||||+.+||+++|||
T Consensus 92 ~~G~vsm~~~~~~s~~sqF 110 (162)
T d2cfea1 92 KPGLLSMANAGPNTNGSQF 110 (162)
T ss_dssp STTEEEECCSSTTCBSSCE
T ss_pred CceEEEEeecCCCCCCcce
Confidence 8999999999999999998
|
| >d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=6.5e-18 Score=145.16 Aligned_cols=99 Identities=58% Similarity=0.921 Sum_probs=88.2
Q ss_pred eeeeeeeceeeeeeeeccCCccccceeeeeccceecceeEEEEecCcEEEecCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 297 VRLVTSLGHINLELYCNVFPKTCENFMKHCENGYYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 297 ~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
...+|+.|.+.++||.+.+|.+++||++||+.+||+|+.|||+++++++|+|++.+.+.++.......+.+|....++|+
T Consensus 12 a~~~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (164)
T d2a2na1 12 AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHD 91 (164)
T ss_dssp EEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCCSC
T ss_pred EEEEeceeEEEEEEcCCCChHHHHHHHHHHhCCCcccceeeEEeeeeeEeecccccccCCCceeeecccccccccccccC
Confidence 34458999999999999999999999999999999999999999999999999876655555555566777778889999
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
++|+++|++.++|++||||
T Consensus 92 ~~~~l~~~~~~~~s~~sqF 110 (164)
T d2a2na1 92 RPYTLSMANAGSNTNGSQF 110 (164)
T ss_dssp SSSEEEECCSSTTCBCSCE
T ss_pred ccceeehhhcCCCCCcccc
Confidence 9999999999999999998
|
| >d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.1e-17 Score=143.13 Aligned_cols=94 Identities=53% Similarity=0.816 Sum_probs=82.1
Q ss_pred eeeceeeeeeeeccCCccccceeeeec---cceecceeEEEEecCcEEEecCCCC-CCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE---NGYYNGTKFHRSIRNFMIQGGDPTG-TGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~---~g~y~~~~~~r~~~~~~iq~g~~~~-~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+..|++.++||.+.+|.|++||++||+ .++|+++.|||+++++++|+|++.. .+.++...++..+.+| ....+|+
T Consensus 13 ~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 91 (161)
T d2r99a1 13 KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDE-NFILKHT 91 (161)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EeceEEEEEEcCCCCcHHHHHHHHhhhhccccccCCcEEEEEEEeeeEEeeeccCCCCCCCccccCcccccc-ccccccc
Confidence 457889999999999999999999995 4789999999999999999999874 5566667777766666 5577888
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
.+|+|+||+.+||+++|||
T Consensus 92 ~~G~ls~~~~~~~s~~sqF 110 (161)
T d2r99a1 92 GPGLLSMANSGPNTNGSQF 110 (161)
T ss_dssp SSSEEEECCSSTTCBCSCE
T ss_pred cceeeeecccCCCCcCcce
Confidence 9999999999999999998
|
| >d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.9e-17 Score=142.17 Aligned_cols=94 Identities=54% Similarity=0.855 Sum_probs=82.5
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccc---eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENG---YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g---~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+.+|.+.++||.+.||.|++||++||+.+ +|+++.|||+++++++|+|+.. ..+.++...++..++++ .+.+.|+
T Consensus 14 ~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 92 (164)
T d2z6wa1 14 KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDE-NFTLKHV 92 (164)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-CCCSCCC
T ss_pred EeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccceEecCCccCCCCCCCccccCCcCCcc-ccccccC
Confidence 46788999999999999999999999766 7999999999999999999976 35666777778777777 4456677
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
.+|+||||+++|++++|||
T Consensus 93 ~~G~lsma~~~~~s~~sqF 111 (164)
T d2z6wa1 93 GPGVLSMANAGPNTNGSQF 111 (164)
T ss_dssp STTEEEECCSSTTCBCSCE
T ss_pred CccEEEEecCCCCCCCcce
Confidence 8999999999999999998
|
| >d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Peptidyl-prolyl cis-trans isomerase A, PpiA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=2.4e-17 Score=142.50 Aligned_cols=95 Identities=49% Similarity=0.842 Sum_probs=84.3
Q ss_pred eeeeeeceeeeeeeeccCCccccceeeeeccc---------------eecceeEEEEecCcEEEecCCCCCCCCCcccCC
Q psy13629 298 RLVTSLGHINLELYCNVFPKTCENFMKHCENG---------------YYNGTKFHRSIRNFMIQGGDPTGTGTGGESIWG 362 (395)
Q Consensus 298 ~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g---------------~y~~~~~~r~~~~~~iq~g~~~~~g~~~~~~~~ 362 (395)
..+|+.|.+.++||.+.+|.+++||++||+.+ ||+++.|||+++++.+|+|++.+.+.++. .
T Consensus 7 ti~T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~~~~~~~---~ 83 (171)
T d1w74a_ 7 TLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP---G 83 (171)
T ss_dssp EEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSSSSCCS---S
T ss_pred EEEECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccCCCCCCc---c
Confidence 34588999999999999999999999999876 79999999999999999999886666554 3
Q ss_pred CCCCCCCCCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 363 KPFEDEFKPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 363 ~~~~~e~~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
..+.+|..+.++|+++|+|+|++.+||++||||
T Consensus 84 ~~~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqF 116 (171)
T d1w74a_ 84 YKFADEFHPELQFDKPYLLAMANAGPGTNGSQF 116 (171)
T ss_dssp CCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCE
T ss_pred cccccccCCCcCCCCCEEEEEEecCCCCCCcce
Confidence 456677778889999999999999999999998
|
| >d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]
Probab=99.65 E-value=2.3e-17 Score=142.77 Aligned_cols=94 Identities=60% Similarity=0.908 Sum_probs=83.7
Q ss_pred eeeceeeeeeeeccCCccccceeeeec----------cceecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE----------NGYYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEF 369 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~----------~g~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~ 369 (395)
+..|.+.++||.+.||.|++||++||+ .++|+++.|||+++++++|+|+.. +.+.++..+++..+++|.
T Consensus 15 ~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~~~~e~ 94 (172)
T d2igva1 15 KASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDEN 94 (172)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC
T ss_pred EeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCCCCCCCcccCCCccCccc
Confidence 467889999999999999999999995 479999999999999999999975 567778888888899985
Q ss_pred CCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 370 KPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 370 ~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
. ...|+.+|+||||+.+|++++|||
T Consensus 95 ~-~~~~~~~G~lsma~~~~~~~~sqF 119 (172)
T d2igva1 95 F-KEKHTGPGVLSMANAGPNTNGSQF 119 (172)
T ss_dssp C-CSCCCSTTEEEECCSSTTCBSSCE
T ss_pred c-ccccCCCcEEEEeecCCCCcCcee
Confidence 4 556777999999999999999998
|
| >d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Plasmodium falciparum [TaxId: 5833]
Probab=99.65 E-value=2.1e-17 Score=142.73 Aligned_cols=94 Identities=53% Similarity=0.923 Sum_probs=82.9
Q ss_pred eeeceeeeeeeeccCCccccceeeeec---------cceecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCE---------NGYYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFK 370 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~---------~g~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~ 370 (395)
+..|.+.++||++.||.+|+||+.||+ .++|+++.|||+++++++|+|+.. +.+.++...++..+++| .
T Consensus 15 t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~~~-~ 93 (170)
T d1qnga_ 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDE-N 93 (170)
T ss_dssp SEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC-C
T ss_pred EEccEEEEEECCCCChHHHHHHHhhhccccccccCccCccCcccceEEEeCceEEecCccCCCCCCCcccCCCccccc-c
Confidence 578899999999999999999999996 468999999999999999999865 45566667778888877 4
Q ss_pred CCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 371 PNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 371 ~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
+.+.|+.+|+||||+.+|+++||||
T Consensus 94 ~~~~~~~~G~lsma~~~~~s~~sqF 118 (170)
T d1qnga_ 94 FNMKHDQPGLLSMANAGPNTNSSQF 118 (170)
T ss_dssp CCSCCCSTTEEEECCSSTTCBCSCE
T ss_pred ccccCCCCeEEEEeecCCCCccccc
Confidence 5677888999999999999999998
|
| >d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Mouse (Mus musculus), variant C [TaxId: 10090]
Probab=99.65 E-value=4.4e-17 Score=142.23 Aligned_cols=94 Identities=51% Similarity=0.809 Sum_probs=82.7
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccc---eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENG---YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g---~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+.+|++.++||.+.+|.+++||++||+.+ +|+++.|||+++++++|+|++. ..+.++..+++..++++. ....|+
T Consensus 19 ~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 97 (182)
T d2rmca_ 19 KDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDEN-FKLKHY 97 (182)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCCSSSSSSCCCBTTBSCBCCCC-CCSCCC
T ss_pred EECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCceEEcCCCCCCCCCCCCCCcCCcccccc-cccccC
Confidence 46788999999999999999999999655 7999999999999999999976 456667778888888874 455677
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
.+|+||||+.++|+++|||
T Consensus 98 ~~G~lsma~~~~~s~~sqF 116 (182)
T d2rmca_ 98 GIGWVSMANAGPDTNGSQF 116 (182)
T ss_dssp STTEEEECCSSTTCBCSCE
T ss_pred CCccEehhhcCCCccCccc
Confidence 8999999999999999998
|
| >d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Aspergillus fumigatus [TaxId: 5085]
Probab=99.64 E-value=5.7e-18 Score=146.47 Aligned_cols=99 Identities=49% Similarity=0.790 Sum_probs=62.8
Q ss_pred ceeeeeeeceeeeeeeeccCCccccceeeeeccce---ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCC
Q psy13629 296 YVRLVTSLGHINLELYCNVFPKTCENFMKHCENGY---YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKP 371 (395)
Q Consensus 296 ~~~~~t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~---y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~ 371 (395)
...-+|..|.+.++||.+.+|.+++||++||+.++ |+++.|||+++++++|+|+.. +.+.++....+..+.++ ..
T Consensus 13 ~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~-~~ 91 (171)
T d2c3ba1 13 VGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADE-NF 91 (171)
T ss_dssp TTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC-----------------------
T ss_pred cccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccccccCceeeEEEEEEeeEcCCccCCCCCCCCcCCCCccccc-cc
Confidence 33445788999999999999999999999999988 889999999999999999975 45565666666666666 45
Q ss_pred CCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 372 NYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 372 ~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
.++|+.+|+||||+.+||++||||
T Consensus 92 ~~~~~~~G~lsma~~~~~s~~sqF 115 (171)
T d2c3ba1 92 SRKHDKKGILSMANAGPNTNGSQF 115 (171)
T ss_dssp CHHHHHTCEEEEC---------CE
T ss_pred cccCCCCceEEeeecCCCCCCcce
Confidence 667888999999999999999998
|
| >d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]
Probab=99.63 E-value=6e-17 Score=141.37 Aligned_cols=94 Identities=50% Similarity=0.815 Sum_probs=83.5
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccc---eecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENG---YYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g---~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+.+|.+.++||.+.+|.+++||++||+.+ +|+++.|||++++|++|+|+.. +.+.++...++..+.+|. ....|+
T Consensus 18 ~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~~~~~~~~~~~~~-~~~~~~ 96 (182)
T d1h0pa_ 18 KPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADEN-FKLKHY 96 (182)
T ss_dssp EEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC-CCSCCC
T ss_pred EECeEEEEEECCCCChHHHHHHHHHHHhcccCCcCCceEEEEEecceEEcCCCCCCCCCCCCCCCCCccCccc-cccccc
Confidence 56788999999999999999999999765 8999999999999999999975 567777888888888874 455677
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
.+|+++||+.++|+++|||
T Consensus 97 ~~G~~~~a~~g~~s~~sqF 115 (182)
T d1h0pa_ 97 GAGWLSMANAGADTNGSQF 115 (182)
T ss_dssp STTEEEECCSSTTCBCSCE
T ss_pred CCceeeecccCCCCcCccc
Confidence 7999999999999999998
|
| >d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.62 E-value=1.2e-16 Score=137.43 Aligned_cols=93 Identities=49% Similarity=0.771 Sum_probs=80.2
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccce---ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENGY---YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKPNYTHT 376 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~---y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~~~~~~ 376 (395)
+.+|++.++||.+.+|.+++||+.||+.++ |+|+.|||+++++++|+|+.. .++.++...++..++++. ... |+
T Consensus 17 ~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 94 (166)
T d1xo7a_ 17 EPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDEN-LKI-KH 94 (166)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC-CCS-CC
T ss_pred EECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCCEEEeCCCCCCCCCCCCCCCCccccccc-ccc-cc
Confidence 567889999999999999999999999988 999999999999999999865 456667766666666663 343 44
Q ss_pred CCeEEEeecCCCCCCCCCC
Q psy13629 377 GRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 377 ~~G~l~ma~~~~~~~~sqf 395 (395)
.+|+|+||+.+||+++|||
T Consensus 95 ~~G~l~~a~~g~~s~~sqF 113 (166)
T d1xo7a_ 95 FVGAVSMANAGPNSNGSQF 113 (166)
T ss_dssp CTTEEEECCSSTTCBCSCE
T ss_pred cccceeecccCCCCCCCee
Confidence 6999999999999999998
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.62 E-value=2.2e-14 Score=135.51 Aligned_cols=189 Identities=19% Similarity=0.155 Sum_probs=139.3
Q ss_pred CceeE-----EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC----CCeEEEEEccCCCCCceEEEEe--C
Q psy13629 104 GAYLL-----DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG----TEMISCCTFDGNNVGSKHNVIT--N 172 (395)
Q Consensus 104 ~~~~~-----~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~----~~~I~~~~~dg~~~~~~~~i~~--~ 172 (395)
.+|+. .|.+++.+++.......+....+.||++++++ +||+++.. ...|.+.+.++. ....+.. .
T Consensus 52 ~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~ 127 (319)
T d2dg1a1 52 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGD---NLQDIIEDLS 127 (319)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSC---SCEEEECSSS
T ss_pred CEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCc---eeeeeccCCC
Confidence 45654 57778887744455667778889999999865 68887753 345666666665 2233333 2
Q ss_pred CCCCcceEEEecCCCeEEEEeCC------CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEE
Q psy13629 173 GLITPDGLAIDWLTEKLYWTDSE------TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERG 246 (395)
Q Consensus 173 ~~~~p~glAVD~~~~~LYwtd~~------~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~ 246 (395)
....|+++++|. .|+||++|.. .+.+++.+.+|+..+.+. ..+..|+||+++|+++.||++|.. ..+|.++
T Consensus 128 ~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~-~~~~~pnGia~s~dg~~lyvad~~-~~~I~~~ 204 (319)
T d2dg1a1 128 TAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETT-ANRLHRI 204 (319)
T ss_dssp SCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGG-GTEEEEE
T ss_pred cccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEe-eccceeeeeeeccccceEEEeccc-CCceEEE
Confidence 456799999998 6689999854 346999999998777666 678899999999999999999955 7899999
Q ss_pred ecCCCCcceEE-----E-EecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 247 AMNGDPRHRKV-----I-VDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 247 ~~dG~~~~~~~-----l-v~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
++++....... . .......|.||++| .+++||++++..++|.+++.+|....+
T Consensus 205 d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD-~~G~l~Va~~~~g~V~~~~p~G~~l~~ 263 (319)
T d2dg1a1 205 ALEDDGVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNKRGYPIGQ 263 (319)
T ss_dssp EECTTSSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEETTTEEEEECTTSCEEEE
T ss_pred EEcCCCceeccccceeeeccCCccceeeeeEc-CCCCEEEEEcCCCEEEEECCCCcEEEE
Confidence 88653222211 1 11234569999999 567899999999999999999975543
|
| >d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]
Probab=99.62 E-value=1.1e-16 Score=138.52 Aligned_cols=94 Identities=50% Similarity=0.909 Sum_probs=80.3
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccce--------ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENGY--------YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKP 371 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~--------y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~ 371 (395)
+.+|++.++||.+.+|.+++||++||+.+| |+++.|||+++++++|+|+.. +.+.......+..+.++..
T Consensus 18 ~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~~~~~~~~~~~~~~~~- 96 (173)
T d1qoia_ 18 QEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENF- 96 (173)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHSCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCCCTTSSCBCCCCC-
T ss_pred EeCeEEEEEEcCCCCcHHHHHHHHhhcccccccCCCCCcCCcccceeccceeeccCCcccCCcceeecccCCccccccc-
Confidence 467889999999999999999999999998 899999999999999999976 3444445555666777744
Q ss_pred CCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 372 NYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 372 ~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
...|+.+|+|+||+++||+++|||
T Consensus 97 ~~~~~~~G~l~ma~~~~~s~~sqF 120 (173)
T d1qoia_ 97 KLRHSAPGLLSMANSGPSTNGCQF 120 (173)
T ss_dssp CSCCCSTTEEEECCSSTTCBCSCE
T ss_pred ccccCCCcEEEeeecCCCCCCcee
Confidence 445667999999999999999998
|
| >d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Plasmodium yoelii [TaxId: 5861]
Probab=99.61 E-value=1.7e-16 Score=138.91 Aligned_cols=94 Identities=51% Similarity=0.878 Sum_probs=82.5
Q ss_pred eeeceeeeeeeeccCCccccceeeeeccce--------ecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCENGY--------YNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDEFKP 371 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~g~--------y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e~~~ 371 (395)
+.+|++.++||.+.||.|++||++||+.++ |+|+.|||+++++++|+|+.. ..+.+...+.+..+++| ..
T Consensus 28 ~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~-~~ 106 (186)
T d1z81a1 28 NFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDE-NF 106 (186)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSCCCCC-CC
T ss_pred EeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCccccCCcccccccCCccccc-cc
Confidence 357889999999999999999999999998 999999999999999999975 44555566677777777 44
Q ss_pred CCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 372 NYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 372 ~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
..+|+.+|+++|++.+||+++|||
T Consensus 107 ~~~~~~~G~~~~~~~g~~~~~sqF 130 (186)
T d1z81a1 107 DIKHDKEGLLSMANSGPNTNGCQF 130 (186)
T ss_dssp CSCCCSTTEEEECCSSSSCCCSCE
T ss_pred ccccCCCccchhhhcCCCccccce
Confidence 667888999999999999999998
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.61 E-value=1.2e-13 Score=130.24 Aligned_cols=159 Identities=11% Similarity=0.079 Sum_probs=126.4
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCC----CCeEEEEEC
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE----TNKLEVSSL 204 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~----~~~I~v~~l 204 (395)
....|++||..+ .|||+|...++|+|++.++. ............|.||+++. .++||+++.. ...|...+.
T Consensus 40 ~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~---~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~ 114 (319)
T d2dg1a1 40 LQLEGLNFDRQG-QLFLLDVFEGNIFKINPETK---EIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATE 114 (319)
T ss_dssp CCEEEEEECTTS-CEEEEETTTCEEEEECTTTC---CEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECT
T ss_pred cCcEeCEECCCC-CEEEEECCCCEEEEEECCCC---eEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcC
Confidence 345799999775 59999999999999999986 34455566677899999997 6799999843 457888888
Q ss_pred CCCceEEEEec--CCCCceeEEEeCCCCeEEEEeeCC-----CCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccE
Q psy13629 205 DGKKRKVLYWE--DIDQPRAIALVPQDSIMFWTDWGE-----VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRL 277 (395)
Q Consensus 205 dg~~~~~l~~~--~~~~P~~iavdp~~g~LYwtd~~~-----~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~r 277 (395)
++.....++.. ....|+++++++ +|.||++|+.. ...+++++.+| ...+.+ ...+..||||+++.+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~~-~~~~~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 115 NGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPI-IQNISVANGIALSTDEKV 190 (319)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS--CCEEEE-EEEESSEEEEEECTTSSE
T ss_pred CCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEeccc--ceeEEE-eeccceeeeeeeccccce
Confidence 88877766632 367799999998 56899999652 34699999998 444433 345678999999999999
Q ss_pred EEEeccceeeeeeeccccc
Q psy13629 278 LYWIDGRLTFIEVMDYDGY 296 (395)
Q Consensus 278 LYwaD~~~~~I~~~~~dG~ 296 (395)
||++|...++|.+++++..
T Consensus 191 lyvad~~~~~I~~~d~~~~ 209 (319)
T d2dg1a1 191 LWVTETTANRLHRIALEDD 209 (319)
T ss_dssp EEEEEGGGTEEEEEEECTT
T ss_pred EEEecccCCceEEEEEcCC
Confidence 9999999999999987654
|
| >d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin (eukaryotic) species: Nematode (Brugia malayi) [TaxId: 6279]
Probab=99.59 E-value=5e-16 Score=134.46 Aligned_cols=94 Identities=54% Similarity=0.890 Sum_probs=79.9
Q ss_pred eeeceeeeeeeeccCCccccceeeeecc-----------ceecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCEN-----------GYYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDE 368 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~-----------g~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e 368 (395)
+.+|.+.++||++.+|.+++||++||+. ++|+++.|||+++++++|+|+.. +.+.++.+.++....++
T Consensus 15 ~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~~~~~~~~~~~~~~~ 94 (174)
T d1a33a_ 15 NLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDE 94 (174)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCBCCC
T ss_pred EeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCCCCCCCccCcccccc
Confidence 3578899999999999999999999964 68999999999999999999975 45556666655555555
Q ss_pred CCCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 369 FKPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 369 ~~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
....+|+.+|+++|++.+||+++|||
T Consensus 95 -~~~~~~~~~g~l~~~~~~~~s~~sqF 120 (174)
T d1a33a_ 95 -EFVMKHDEPFVVSMANKGPNTNGSQF 120 (174)
T ss_dssp -CSCSCCCSTTEEEECCSSTTCBCSCE
T ss_pred -ccccccCcceeeeeeccCCCCCCccc
Confidence 55677888999999999999999998
|
| >d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Cyclophilin-like superfamily: Cyclophilin-like family: Cyclophilin (peptidylprolyl isomerase) domain: Cyclophilin 40 isomerase domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.58 E-value=5.4e-16 Score=136.64 Aligned_cols=94 Identities=53% Similarity=0.885 Sum_probs=82.4
Q ss_pred eeeceeeeeeeeccCCccccceeeeecc-----------ceecceeEEEEecCcEEEecCCC-CCCCCCcccCCCCCCCC
Q psy13629 301 TSLGHINLELYCNVFPKTCENFMKHCEN-----------GYYNGTKFHRSIRNFMIQGGDPT-GTGTGGESIWGKPFEDE 368 (395)
Q Consensus 301 t~~g~~~i~Lf~d~ap~t~~nf~~l~~~-----------g~y~~~~~~r~~~~~~iq~g~~~-~~g~~~~~~~~~~~~~e 368 (395)
+..|++.++||.+.+|.|++||++||+. ++|+|+.|||+++++++|+|+.. ..+.++....+..+.+|
T Consensus 26 ~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~ 105 (195)
T d1ihga2 26 ERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDE 105 (195)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCC
T ss_pred EeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCCCCCCccCCCCccccc
Confidence 4578899999999999999999999974 46999999999999999999975 45666777778888888
Q ss_pred CCCCCCCCCCeEEEeecCCCCCCCCCC
Q psy13629 369 FKPNYTHTGRGVLSMANSGPNTNTSQL 395 (395)
Q Consensus 369 ~~~~~~~~~~G~l~ma~~~~~~~~sqf 395 (395)
.. ...|+.+|+|+|++.+||+++|||
T Consensus 106 ~~-~~~h~~~G~lsm~~~~~~s~~SqF 131 (195)
T d1ihga2 106 NF-HYKHDKEGLLSMANAGSNTNGSQF 131 (195)
T ss_dssp CC-CBCCCSTTEEEECCSSTTCBCSCE
T ss_pred cc-CcccCcceEEeeeecCCCCCCcee
Confidence 44 567888999999999999999998
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.55 E-value=2.6e-13 Score=127.75 Aligned_cols=180 Identities=17% Similarity=0.118 Sum_probs=132.2
Q ss_pred EEEEeeCCCCCccEEecC-----CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-----CCCCcc
Q psy13629 109 DIRIANLSRPLKPVTIIK-----DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-----GLITPD 178 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~-----~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-----~~~~p~ 178 (395)
.|.+++.++ ...+.... ....|.||++++.++.||++|. .+.|.+++.+|. ...+... .+..|+
T Consensus 47 ~I~r~d~~~-~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-~~~i~~~~~~g~----~~~~~~~~~~g~~~~~pn 120 (314)
T d1pjxa_ 47 EILRIDLKT-GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTDGT----FEEIAKKDSEGRRMQGCN 120 (314)
T ss_dssp EEEEECTTT-CCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETTSC----EEECCSBCTTSCBCBCCC
T ss_pred EEEEEECCC-CcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-CCeEEEEeCCCc----EEEEEeccccccccCCCc
Confidence 577888776 33333322 2345899999999999999995 467999999985 2222221 245799
Q ss_pred eEEEecCCCeEEEEeCC---------------CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCC----eEEEEeeCC
Q psy13629 179 GLAIDWLTEKLYWTDSE---------------TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDS----IMFWTDWGE 239 (395)
Q Consensus 179 glAVD~~~~~LYwtd~~---------------~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g----~LYwtd~~~ 239 (395)
++++|. .|+||+||.. .++|++++.+|+..... ..+..|+||+++|... +||++|..
T Consensus 121 dl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~--~~~~~pNGi~~~~d~d~~~~~lyv~d~~- 196 (314)
T d1pjxa_ 121 DCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETP- 196 (314)
T ss_dssp EEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE--EEESSEEEEEEEECTTSCEEEEEEEETT-
T ss_pred EEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeecCceeEee--CCcceeeeeEECCCCCcceeEEEEEeec-
Confidence 999997 6899999842 35799999998755432 5688899999998754 79999954
Q ss_pred CCeEEEEecCC--CCcceEEEEec---CCcCceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 240 VPKIERGAMNG--DPRHRKVIVDS---TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 240 ~~~I~~~~~dG--~~~~~~~lv~~---~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
..+|.+.++++ ...+++++... ....|.||++| .+++||++++..++|.+++.+|....
T Consensus 197 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD-~~GnlyVa~~~~g~I~~~dp~~g~~~ 260 (314)
T d1pjxa_ 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGGQPK 260 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCBSCS
T ss_pred ccceEEeeccCccccceeeEEEEccccccccceeeEEe-cCCcEEEEEcCCCEEEEEeCCCCEEE
Confidence 78899988754 22234444432 34569999999 66789999999999999999876543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.52 E-value=5.7e-13 Score=122.87 Aligned_cols=175 Identities=11% Similarity=0.071 Sum_probs=132.5
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEE-EeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV-ITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i-~~~~~~~p~glAVD~~~~ 187 (395)
.|.+++.++.............+.+++++..+ .+|+++....++.+++.+|. ....+ ....+..|.++++|. .+
T Consensus 94 ~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g~---~~~~~g~~~~~~~~~~i~~d~-~g 168 (279)
T d1q7fa_ 94 QIQIYNQYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGN---VLHKFGCSKHLEFPNGVVVND-KQ 168 (279)
T ss_dssp EEEEECTTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSC---EEEEEECTTTCSSEEEEEECS-SS
T ss_pred ccccccccccceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccCCc---eeecccccccccccceeeecc-ce
Confidence 66777776632233335567889999999754 68889988899999998885 22222 234578899999996 68
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe-cCCcC
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD-STIFW 265 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~-~~~~~ 265 (395)
+||++|...++|.+++.+|+....+-. ..+..|.||++|+. |.||++|+....+|...+.+| .-...+.. .....
T Consensus 169 ~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~-G~i~Vad~~~~~~v~~f~~~G--~~~~~~~~~~~~~~ 245 (279)
T d1q7fa_ 169 EIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQDG--QLISALESKVKHAQ 245 (279)
T ss_dssp EEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTTS--CEEEEEEESSCCSC
T ss_pred eEEeeeccccceeeeecCCceeeeecccccccCCcccccccC-CeEEEEECCCCcEEEEECCCC--CEEEEEeCCCCCCC
Confidence 999999999999999999987766543 24778999999985 579999977677899999999 43444433 34568
Q ss_pred ceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 266 PNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 266 P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
|.+|+++. +++||++|. +++|....+
T Consensus 246 p~~vav~~-dG~l~V~~~-n~~v~~fr~ 271 (279)
T d1q7fa_ 246 CFDVALMD-DGSVVLASK-DYRLYIYRY 271 (279)
T ss_dssp EEEEEEET-TTEEEEEET-TTEEEEEEC
T ss_pred EeEEEEeC-CCcEEEEeC-CCeEEEEEe
Confidence 99999995 568999985 577766554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.44 E-value=1.6e-12 Score=122.29 Aligned_cols=179 Identities=15% Similarity=0.240 Sum_probs=130.9
Q ss_pred EEEEeeCCCCCccEEecCC-----CCCeEEEEEEcCCCEEEEEECC---------------CCeEEEEEccCCCCCceEE
Q psy13629 109 DIRIANLSRPLKPVTIIKD-----LEEGAAIDYYYKKSMVCWTDHG---------------TEMISCCTFDGNNVGSKHN 168 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~-----~~~~~gl~~d~~~~~lywsd~~---------------~~~I~~~~~dg~~~~~~~~ 168 (395)
.|.+++.++ ......... +..+..+++|+. +.||++|.. .++|++++.+|. ..
T Consensus 93 ~i~~~~~~g-~~~~~~~~~~~g~~~~~pndl~~d~~-G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-----~~ 165 (314)
T d1pjxa_ 93 GLLVVQTDG-TFEEIAKKDSEGRRMQGCNDCAFDYE-GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-----MI 165 (314)
T ss_dssp EEEEEETTS-CEEECCSBCTTSCBCBCCCEEEECTT-SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-----EE
T ss_pred eEEEEeCCC-cEEEEEeccccccccCCCcEEEECCC-CCEEEecCccCcccccccceeccCCceEEEEeecCc-----ee
Confidence 577788776 322222221 335788999986 579999853 247899988885 33
Q ss_pred EEeCCCCCcceEEEecCCC----eEEEEeCCCCeEEEEECCCCce----EEEEe---cCCCCceeEEEeCCCCeEEEEee
Q psy13629 169 VITNGLITPDGLAIDWLTE----KLYWTDSETNKLEVSSLDGKKR----KVLYW---EDIDQPRAIALVPQDSIMFWTDW 237 (395)
Q Consensus 169 i~~~~~~~p~glAVD~~~~----~LYwtd~~~~~I~v~~ldg~~~----~~l~~---~~~~~P~~iavdp~~g~LYwtd~ 237 (395)
.+...+..|+||++++... .||++|...++|.++++++... ++... .....|.||++|+ +|.||+++|
T Consensus 166 ~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~ 244 (314)
T d1pjxa_ 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANW 244 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEE
T ss_pred EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEc
Confidence 4455678999999987654 7999999999999998765432 22222 1234699999996 678999998
Q ss_pred CCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 238 GEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 238 ~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
+ ..+|.+++.+| ......+.....+|.++++..+++.||++++..++|+++++.-..+
T Consensus 245 ~-~g~I~~~dp~~--g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 245 G-SSHIEVFGPDG--GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK 302 (314)
T ss_dssp T-TTEEEEECTTC--BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred C-CCEEEEEeCCC--CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence 8 68999999997 3333344444568999999987778999999999999988765443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.42 E-value=1.6e-11 Score=112.88 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=135.8
Q ss_pred EEEEEeeCCCCCccEEec------CCCCCeEEEEEEcCCCEEEEEE-CCCCeEEEEEccCCCCCceEEEEeCCCCCcceE
Q psy13629 108 LDIRIANLSRPLKPVTII------KDLEEGAAIDYYYKKSMVCWTD-HGTEMISCCTFDGNNVGSKHNVITNGLITPDGL 180 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~------~~~~~~~gl~~d~~~~~lywsd-~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~gl 180 (395)
+.|++++.+|. ....+. .....|.+++++...+..+|.. ..++.|.+.+.+|. ....+-...+..|.++
T Consensus 44 ~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~---~~~~~~~~~~~~p~~~ 119 (279)
T d1q7fa_ 44 HRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ---FVRKFGATILQHPRGV 119 (279)
T ss_dssp TEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC---EEEEECTTTCSCEEEE
T ss_pred CEEEEEeCCCC-EEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc---ceeecCCCccccccee
Confidence 46888887762 222221 1234688999888777777664 45678888888885 3344444567889999
Q ss_pred EEecCCCeEEEEeCCCCeEEEEECCCCceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEE
Q psy13629 181 AIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIV 259 (395)
Q Consensus 181 AVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv 259 (395)
|+|. .+++|+++...+++.+.+.+|+....+-. ..+..|.++++++ ++.+|++|+. ..+|.+.+.+| .....+-
T Consensus 120 avd~-~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~-~~~V~~~d~~G--~~~~~~g 194 (279)
T d1q7fa_ 120 TVDN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR-AHCVKVFNYEG--QYLRQIG 194 (279)
T ss_dssp EECT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG-GTEEEEEETTC--CEEEEES
T ss_pred cccc-CCcEEEEeeccceeeEeccCCceeecccccccccccceeeecc-ceeEEeeecc-ccceeeeecCC--ceeeeec
Confidence 9996 77899999999999999999987665532 4578999999997 5789999965 78999999999 4444443
Q ss_pred ec-CCcCceeEEEeccccEEEEeccce-eeeeeeccccceeee
Q psy13629 260 DS-TIFWPNGIAIDFNNRLLYWIDGRL-TFIEVMDYDGYVRLV 300 (395)
Q Consensus 260 ~~-~~~~P~glalD~~~~rLYwaD~~~-~~I~~~~~dG~~~~~ 300 (395)
.. .+..|.||++|.. ++||++|... .+|...+.+|.-...
T Consensus 195 ~~g~~~~P~giavD~~-G~i~Vad~~~~~~v~~f~~~G~~~~~ 236 (279)
T d1q7fa_ 195 GEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQDGQLISA 236 (279)
T ss_dssp CTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTTSCEEEE
T ss_pred ccccccCCcccccccC-CeEEEEECCCCcEEEEECCCCCEEEE
Confidence 32 4678999999954 5799999754 478888999975543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.39 E-value=3.4e-11 Score=111.88 Aligned_cols=182 Identities=8% Similarity=0.019 Sum_probs=136.9
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|.+++.++ ....+......+.+++++++++ ||+++...+.+.++.+++................|+++++|. .++
T Consensus 50 ~I~~i~p~g--~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~ 125 (302)
T d2p4oa1 50 EIVSITPDG--NQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQ 125 (302)
T ss_dssp EEEEECTTC--CEEEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSE
T ss_pred EEEEEeCCC--CEEEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc-CCC
Confidence 677787766 3455666778899999998765 899998888888888876532222223334567899999997 689
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEec----------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc--ceE
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWE----------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR--HRK 256 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~----------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~--~~~ 256 (395)
+|+++...+.|.+.++++......... ....|++|+.+ .+.||+++.. ..+|.+++.++... ...
T Consensus 126 ~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~ 202 (302)
T d2p4oa1 126 YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTE-KMLLLRIPVDSTDKPGEPE 202 (302)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETT-TTEEEEEEBCTTSCBCCCE
T ss_pred EEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCC-CCeEEeccccccccccccc
Confidence 999999999999999998766554432 24578888887 5799999954 78999999987422 222
Q ss_pred EEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 257 VIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 257 ~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
... ....|.||++|. +++||+++...++|.+++.+|.....
T Consensus 203 ~~~--~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~ 243 (302)
T d2p4oa1 203 IFV--EQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTII 243 (302)
T ss_dssp EEE--ESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEE
T ss_pred ccc--CCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEE
Confidence 332 345799999995 56799999999999999999976544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.24 E-value=5.4e-10 Score=103.53 Aligned_cols=158 Identities=16% Similarity=0.053 Sum_probs=119.2
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCC-
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGK- 207 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~- 207 (395)
.-+.++++++++ +||++|...++|++++.+|. ..........|.+||+++ +++||+++...+.+.+.++++.
T Consensus 28 ~~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g~-----~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~ 100 (302)
T d2p4oa1 28 TFLENLASAPDG-TIFVTNHEVGEIVSITPDGN-----QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSD 100 (302)
T ss_dssp CCEEEEEECTTS-CEEEEETTTTEEEEECTTCC-----EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTT
T ss_pred CCcCCEEECCCC-CEEEEeCCCCEEEEEeCCCC-----EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccc
Confidence 347799999875 59999999999999999985 233344457899999998 5779999988888877776543
Q ss_pred --ceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEec----------CCcCceeEEEeccc
Q psy13629 208 --KRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS----------TIFWPNGIAIDFNN 275 (395)
Q Consensus 208 --~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~----------~~~~P~glalD~~~ 275 (395)
............|+++++++ ++.+|+++.. ..+|++.+.++ ....+.... ....|+|++.| +
T Consensus 101 ~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~-~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~ 174 (302)
T d2p4oa1 101 GTVETLLTLPDAIFLNGITPLS-DTQYLTADSY-RGAIWLIDVVQ--PSGSIWLEHPMLARSNSESVFPAANGLKRF--G 174 (302)
T ss_dssp SCEEEEEECTTCSCEEEEEESS-SSEEEEEETT-TTEEEEEETTT--TEEEEEEECGGGSCSSTTCCSCSEEEEEEE--T
T ss_pred cceeeccccCCccccceeEEcc-CCCEEeeccc-cccceeeeccC--CcceeEecCCccceeeccCccccccccccc--C
Confidence 22222224577899999997 5789999954 78999999887 333333222 24578898887 7
Q ss_pred cEEEEeccceeeeeeeccccceee
Q psy13629 276 RLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 276 ~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
+.|||++...++|.+++.++....
T Consensus 175 ~~l~~~~~~~~~i~~~~~~~~~~~ 198 (302)
T d2p4oa1 175 NFLYVSNTEKMLLLRIPVDSTDKP 198 (302)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCB
T ss_pred CceeeecCCCCeEEeccccccccc
Confidence 899999999999999998775443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.17 E-value=1.7e-09 Score=100.18 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=123.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC----CCCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN----GLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~----~~~~p~glAVD~ 184 (395)
.|.+++.++ ...... .....+.+++++..+ .|+++. .+.|.+++.++. ..+.+... ....++++++|+
T Consensus 41 ~I~r~d~~~-g~~~~~-~~~~~~~~i~~~~dg-~l~va~--~~gl~~~d~~tg---~~~~l~~~~~~~~~~~~nd~~vd~ 112 (295)
T d2ghsa1 41 ELHELHLAS-GRKTVH-ALPFMGSALAKISDS-KQLIAS--DDGLFLRDTATG---VLTLHAELESDLPGNRSNDGRMHP 112 (295)
T ss_dssp EEEEEETTT-TEEEEE-ECSSCEEEEEEEETT-EEEEEE--TTEEEEEETTTC---CEEEEECSSTTCTTEEEEEEEECT
T ss_pred EEEEEECCC-CeEEEE-ECCCCcEEEEEecCC-CEEEEE--eCccEEeecccc---eeeEEeeeecCCCcccceeeEECC
Confidence 567788776 333332 333467889988765 555554 357999998865 33444332 234689999998
Q ss_pred CCCeEEEEeCC------CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc----c
Q psy13629 185 LTEKLYWTDSE------TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR----H 254 (395)
Q Consensus 185 ~~~~LYwtd~~------~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~----~ 254 (395)
.|+||+++.. .+.+++.. +| ..+.+. ..+..|+|+++++..+.|||+| ....+|++.++|+... .
T Consensus 113 -~G~iw~~~~~~~~~~~~g~l~~~~-~g-~~~~~~-~~~~~~Ng~~~s~d~~~l~~~d-t~~~~I~~~~~d~~~~~~~~~ 187 (295)
T d2ghsa1 113 -SGALWIGTMGRKAETGAGSIYHVA-KG-KVTKLF-ADISIPNSICFSPDGTTGYFVD-TKVNRLMRVPLDARTGLPTGK 187 (295)
T ss_dssp -TSCEEEEEEETTCCTTCEEEEEEE-TT-EEEEEE-EEESSEEEEEECTTSCEEEEEE-TTTCEEEEEEBCTTTCCBSSC
T ss_pred -CCCEEEEeccccccccceeEeeec-CC-cEEEEe-eccCCcceeeecCCCceEEEee-cccceeeEeeecccccccccc
Confidence 6789988732 23455443 33 333333 5688899999999999999999 4478899999875311 2
Q ss_pred eEEEEe--cCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 255 RKVIVD--STIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 255 ~~~lv~--~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
+..++. ...+.|.||++| .+++||++.+..++|.+++.+|....+
T Consensus 188 ~~~~~~~~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp~G~~~~~ 234 (295)
T d2ghsa1 188 AEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDGNHIAR 234 (295)
T ss_dssp CEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTTCCEEEE
T ss_pred eEEEeccCcccccccceEEc-CCCCEEeeeeCCCceEEecCCCcEeeE
Confidence 334443 235679999999 567899999999999999999987665
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.15 E-value=1.3e-09 Score=100.97 Aligned_cols=153 Identities=13% Similarity=0.091 Sum_probs=115.4
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceE
Q psy13629 131 GAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK 210 (395)
Q Consensus 131 ~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~ 210 (395)
..|..||..++.|||+|...++|+|++.++. .. .+.. -...|.+++.+. .+.|+++.. +.|.++++++...+
T Consensus 20 gEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g---~~-~~~~-~~~~~~~i~~~~-dg~l~va~~--~gl~~~d~~tg~~~ 91 (295)
T d2ghsa1 20 GEGPTFDPASGTAWWFNILERELHELHLASG---RK-TVHA-LPFMGSALAKIS-DSKQLIASD--DGLFLRDTATGVLT 91 (295)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTT---EE-EEEE-CSSCEEEEEEEE-TTEEEEEET--TEEEEEETTTCCEE
T ss_pred eeCCeEECCCCEEEEEECCCCEEEEEECCCC---eE-EEEE-CCCCcEEEEEec-CCCEEEEEe--CccEEeecccceee
Confidence 3688899999999999999999999999885 22 2222 234688999987 577777764 57999999988777
Q ss_pred EEEec----CCCCceeEEEeCCCCeEEEEeeCC-----CCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEe
Q psy13629 211 VLYWE----DIDQPRAIALVPQDSIMFWTDWGE-----VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 211 ~l~~~----~~~~P~~iavdp~~g~LYwtd~~~-----~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwa 281 (395)
.+... ....|+++++|| .|.||+++... ...+++.. +| ... .+...+..|||++++.+++.|||+
T Consensus 92 ~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~-~g--~~~--~~~~~~~~~Ng~~~s~d~~~l~~~ 165 (295)
T d2ghsa1 92 LHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KG--KVT--KLFADISIPNSICFSPDGTTGYFV 165 (295)
T ss_dssp EEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TT--EEE--EEEEEESSEEEEEECTTSCEEEEE
T ss_pred EEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec-CC--cEE--EEeeccCCcceeeecCCCceEEEe
Confidence 76642 234689999998 56789888542 23455554 34 222 233456789999999999999999
Q ss_pred ccceeeeeeeccccce
Q psy13629 282 DGRLTFIEVMDYDGYV 297 (395)
Q Consensus 282 D~~~~~I~~~~~dG~~ 297 (395)
|...++|.+.++|+..
T Consensus 166 dt~~~~I~~~~~d~~~ 181 (295)
T d2ghsa1 166 DTKVNRLMRVPLDART 181 (295)
T ss_dssp ETTTCEEEEEEBCTTT
T ss_pred ecccceeeEeeecccc
Confidence 9999999999887644
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.13 E-value=1.9e-09 Score=102.73 Aligned_cols=172 Identities=10% Similarity=0.025 Sum_probs=121.7
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCC-CceEEEEe-CCCCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNV-GSKHNVIT-NGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~-~~~~~i~~-~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
+...++.+++|+++++.||+.|.+.++|+++..+.... .....+.. .....|+++++++.++.+|+++...++|.+++
T Consensus 142 q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~ 221 (365)
T d1jofa_ 142 QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence 44567899999999999999999999999988765421 11112222 23468999999999999999999999999999
Q ss_pred CCCCceEEEEe-c------------------CCCCceeEEEeCCCCeEEEEeeCCC----CeEEEEec--CCCCcceEEE
Q psy13629 204 LDGKKRKVLYW-E------------------DIDQPRAIALVPQDSIMFWTDWGEV----PKIERGAM--NGDPRHRKVI 258 (395)
Q Consensus 204 ldg~~~~~l~~-~------------------~~~~P~~iavdp~~g~LYwtd~~~~----~~I~~~~~--dG~~~~~~~l 258 (395)
+++.....+.. . ....|.+|+++|+.++||++..+.. ..|..... +|.......+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~ 301 (365)
T d1jofa_ 222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL 301 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEe
Confidence 98754322111 0 1124678999999999999987522 23544444 4421111122
Q ss_pred Eec--CCcCceeEEEec-cccEEEEeccceeeeeeeccccce
Q psy13629 259 VDS--TIFWPNGIAIDF-NNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 259 v~~--~~~~P~glalD~-~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
... ...+|++|+++. .++.||+++...+.|.+.+.++..
T Consensus 302 ~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 302 SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred eEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 222 346899999986 678899999999999888776553
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=2.1e-08 Score=91.54 Aligned_cols=185 Identities=9% Similarity=0.023 Sum_probs=131.6
Q ss_pred EEEEEeeCCCCCccE--EecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 108 LDIRIANLSRPLKPV--TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~--~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
+.|++++++...... ...+..+.+.+|+|+++++.||.++..++.|..++++.................|.+|++++.
T Consensus 14 ~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spD 93 (333)
T d1ri6a_ 14 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ 93 (333)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTT
T ss_pred CcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCC
Confidence 478888886633333 334566889999999999999999988899999888754321112222334567999999999
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEEE--ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEE----E
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVLY--WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVI----V 259 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l~--~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~l----v 259 (395)
++.||+++.....|...+.+........ ......|.+++++|...++|+++.. ...|...+........... .
T Consensus 94 g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 172 (333)
T d1ri6a_ 94 GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-QDRICLFTVSDDGHLVAQDPAEVT 172 (333)
T ss_dssp SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-GTEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc-cceeeEEEeccCCcceeeeceeee
Confidence 9999999988888888887766554333 2456789999999999999999965 5567666665421111111 1
Q ss_pred ecCCcCceeEEEeccccEEEEeccceeeeeeecc
Q psy13629 260 DSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 260 ~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
......|..++++..+..+|+++...+.......
T Consensus 173 ~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~ 206 (333)
T d1ri6a_ 173 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL 206 (333)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred eecCCCccEEEEeccceeEEeeccccCceEEEee
Confidence 1224578999999999999999876665554443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.03 E-value=2.1e-07 Score=83.16 Aligned_cols=181 Identities=15% Similarity=0.096 Sum_probs=136.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|.++|+.. .+.+...+....|.+++|++++++||+++..+++|..+++... . ..-.......|.++++++.++.
T Consensus 13 ~v~v~D~~t-~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~---~-~~~~~~~~~~~~~~~~~~~~~~ 87 (301)
T d1l0qa2 13 NISVIDVTS-NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---N-VIATVPAGSSPQGVAVSPDGKQ 87 (301)
T ss_dssp EEEEEETTT-TEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---E-EEEEEECSSSEEEEEECTTSSE
T ss_pred EEEEEECCC-CeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---c-eeeeeecccccccccccccccc
Confidence 688899876 5555555666789999999999999999988999999999864 2 2222234467999999999999
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
+|.+......+.+.+..+......+ .....|..++++|....++.+... ...+...+... ............|..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dg~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~ 162 (301)
T d1l0qa2 88 VYVTNMASSTLSVIDTTSNTVAGTV-KTGKSPLGLALSPDGKKLYVTNNG-DKTVSVINTVT---KAVINTVSVGRSPKG 162 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEEEETT-TTEEEEEETTT---TEEEEEEECCSSEEE
T ss_pred ccccccccceeeecccccceeeeec-cccccceEEEeecCCCeeeeeecc-ccceeeeeccc---cceeeecccCCCceE
Confidence 9999998899999999887766666 556789999999999999888743 45566666554 222222233456999
Q ss_pred EEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
++++..++.+|++......+...........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (301)
T d1l0qa2 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEeeccccceeeecccccccccccccceeee
Confidence 9999999999999877666666555554433
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.00 E-value=1.4e-07 Score=84.36 Aligned_cols=181 Identities=12% Similarity=0.065 Sum_probs=136.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.+.+.+... ............+..+++++.++.++.+...+..+...+.... ...........|..+++.+..+.
T Consensus 97 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 171 (301)
T d1l0qa2 97 TLSVIDTTS-NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK----AVINTVSVGRSPKGIAVTPDGTK 171 (301)
T ss_dssp EEEEEETTT-TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEECCSSEEEEEECTTSSE
T ss_pred eeeeccccc-ceeeeeccccccceEEEeecCCCeeeeeeccccceeeeecccc----ceeeecccCCCceEEEeeccccc
Confidence 455666655 4455555667788999999999999999988888888877764 22333344567999999999999
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
+|+++.....+.+............ .....|.++++++....+|++..+ ....|...+... ......+. ....|.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t--~~~~~~~~-~~~~~~ 247 (301)
T d1l0qa2 172 VYVANFDSMSISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT--NKITARIP-VGPDPA 247 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT--TEEEEEEE-CCSSEE
T ss_pred eeeecccccccccccccceeeeecc-cccCCcceeeccccccccccccccceeeeeeeeecCC--CeEEEEEc-CCCCEE
Confidence 9999988888888888877666555 456779999999999999998765 346788888764 12111122 234799
Q ss_pred eEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
++++++++++||++.+..++|...++.....
T Consensus 248 ~va~spdg~~l~va~~~~~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 248 GIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 9999999999999999999999998755443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=3.8e-08 Score=89.73 Aligned_cols=154 Identities=10% Similarity=-0.001 Sum_probs=113.0
Q ss_pred CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceE-EEE--ecC
Q psy13629 140 KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRK-VLY--WED 216 (395)
Q Consensus 140 ~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~-~l~--~~~ 216 (395)
++.+|++...+++|+.++++..........+ .....|.+||+.+.++.||.+....+.|.+++++..... .+. ...
T Consensus 3 ~~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~ 81 (333)
T d1ri6a_ 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 81 (333)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred ceEEEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence 4579999999999999999754211111122 334789999999999999999998899999888764332 222 234
Q ss_pred CCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 217 IDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 217 ~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
...|.+|+++|++++||++++. ...|.....+................|++++++.+++++|+++.....|...+...
T Consensus 82 ~~~p~~l~~spDg~~l~v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 82 PGSLTHISTDHQGQFVFVGSYN-AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 159 (333)
T ss_dssp SSCCSEEEECTTSSEEEEEETT-TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCCceEEEEcCCCCEEeecccC-CCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence 6789999999999999999854 56677666665222333333445668999999999999999998888887666544
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.75 E-value=1.6e-06 Score=83.70 Aligned_cols=186 Identities=8% Similarity=-0.137 Sum_probs=135.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec----
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW---- 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~---- 184 (395)
.|.++|... .+.....+....+.+++|+++++++|.++ .++.|..++++... .....-......|.++++..
T Consensus 43 ~v~v~D~~t-~~v~~~~~~g~~~~~v~fSpDG~~l~~~s-~dg~v~~~d~~t~~--~~~~~~i~~~~~~~~~~~s~~~Sp 118 (432)
T d1qksa2 43 QIALIDGST-YEIKTVLDTGYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKE--PTTVAEIKIGSEARSIETSKMEGW 118 (432)
T ss_dssp EEEEEETTT-CCEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSSS--CCEEEEEECCSEEEEEEECCSTTC
T ss_pred EEEEEECCC-CcEEEEEeCCCCeeEEEECCCCCEEEEEc-CCCCEEEEEeeCCC--ceEEEEEecCCCCCCeEEecccCC
Confidence 788899887 55555555556899999999999999887 57899999987542 11222223345788888754
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEec-----------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-----------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR 253 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~-----------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~ 253 (395)
.++.||.+....+.|.+.+..+......+.. ....+.+|+.+|.+..+||+.+. ...|..++.... .
T Consensus 119 DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~-~~~i~~~d~~~~-~ 196 (432)
T d1qksa2 119 EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-TGKILLVDYTDL-N 196 (432)
T ss_dssp TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-TTEEEEEETTCS-S
T ss_pred CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-CCeEEEEEccCC-C
Confidence 5678999999899999999887665544422 23456678999999999999844 678888887651 2
Q ss_pred ceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceeee
Q psy13629 254 HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 254 ~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~~ 300 (395)
..++..-..-..|.+++++++++++|++....+.|..++.+......
T Consensus 197 ~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~ 243 (432)
T d1qksa2 197 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA 243 (432)
T ss_dssp EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred cceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEE
Confidence 22222112234799999999999999999999999999987765543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.64 E-value=1.4e-06 Score=81.94 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=103.3
Q ss_pred CeEEEEEEcC---CCEEEEEEC--CCCeEEEEEcc--CCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeC--------
Q psy13629 130 EGAAIDYYYK---KSMVCWTDH--GTEMISCCTFD--GNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS-------- 194 (395)
Q Consensus 130 ~~~gl~~d~~---~~~lywsd~--~~~~I~~~~~d--g~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~-------- 194 (395)
+|.||++... ...||+.+. ...+|..+.++ +..+.-..++....+..|++|++.. .+.+|+|+.
T Consensus 98 ~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~ 176 (340)
T d1v04a_ 98 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL 176 (340)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHH
T ss_pred eccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhh
Confidence 6899987432 237888875 34566655554 3322223344445678899999996 778999972
Q ss_pred -------CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 195 -------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 195 -------~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
....-.++..+++..+++. +++..|+||+++|++++||+++.. ..+|.+.++++...........--..|.
T Consensus 177 ~~~e~~~~~~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~-~~~i~~y~~~~~~~l~~~~~~~l~~~pD 254 (340)
T d1v04a_ 177 KSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAELL-AHKIHVYEKHANWTLTPLRVLSFDTLVD 254 (340)
T ss_dssp HHHHHHTTCCCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGG-GTEEEEEEECTTSCEEEEEEEECSSEEE
T ss_pred hhhhHhhcCCceeEEEEcCCceEEEc-CCCCccceeEECCCCCEEEEEeCC-CCeEEEEEeCCCcccceEEEecCCCCCC
Confidence 2245566667777777666 678899999999999999999966 6789998888732222222222234699
Q ss_pred eEEEeccccEEEEec
Q psy13629 268 GIAIDFNNRLLYWID 282 (395)
Q Consensus 268 glalD~~~~rLYwaD 282 (395)
++.+|..++.++.+-
T Consensus 255 Ni~~d~~~g~lwva~ 269 (340)
T d1v04a_ 255 NISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEECTTTCCEEEEE
T ss_pred ccEEecCCCEEEEEE
Confidence 999997777777664
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.61 E-value=8.9e-07 Score=83.73 Aligned_cols=167 Identities=11% Similarity=0.012 Sum_probs=110.9
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeC--CCCeEEEEE
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS--ETNKLEVSS 203 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~--~~~~I~v~~ 203 (395)
+....+..|+++++++.||.++.. .+..+.++.... ............|..+++++.++.+|.+.. ...++.+..
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~~--~~~~~~i~~~~~-~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~ 113 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAMK--KWSSFAVKSPTE-IVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEBT--EEEEEEEEETTE-EEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred cCCCCCCEEEEcCCCCEEEEEeCC--cEEEEEEeCCCC-eEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeE
Confidence 344556789999999999999754 455555543210 112222233457999999998888888763 345555443
Q ss_pred CCC--------------CceEEEE---ecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe-----c
Q psy13629 204 LDG--------------KKRKVLY---WEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD-----S 261 (395)
Q Consensus 204 ldg--------------~~~~~l~---~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~-----~ 261 (395)
... ....... ......|.+++++|++++||++|.+ ..+|.+.+.+. ........ .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g-~d~v~~~~~~~--~g~~~~~~~~~~~~ 190 (365)
T d1jofa_ 114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-ANKLWTHRKLA--SGEVELVGSVDAPD 190 (365)
T ss_dssp ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TTEEEEEEECT--TSCEEEEEEEECSS
T ss_pred ccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC-CCEEEEEEccC--CCceeeccceeecC
Confidence 321 1111111 1234578999999999999999966 66788877664 22222221 1
Q ss_pred CCcCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 262 TIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 262 ~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
.-..|.+++++++++.+|+++...+.|.+.++++...
T Consensus 191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~ 227 (365)
T d1jofa_ 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH 227 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCc
Confidence 2347999999999999999999999999988876543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.54 E-value=1.2e-05 Score=76.66 Aligned_cols=185 Identities=8% Similarity=-0.104 Sum_probs=131.5
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec----
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW---- 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~---- 184 (395)
.|+++|+.. .+.....+....+.+++|++++++||.++ .++.|..++++... ............|.++++..
T Consensus 43 ~v~vwD~~t-~~~~~~l~~g~~~~~vafSPDGk~l~~~~-~d~~v~vwd~~t~~--~~~~~~i~~~~~~~~~~~s~~~sp 118 (426)
T d1hzua2 43 QIALVDGDS-KKIVKVIDTGYAVHISRMSASGRYLLVIG-RDARIDMIDLWAKE--PTKVAEIKIGIEARSVESSKFKGY 118 (426)
T ss_dssp EEEEEETTT-CSEEEEEECCSSEEEEEECTTSCEEEEEE-TTSEEEEEETTSSS--CEEEEEEECCSEEEEEEECCSTTC
T ss_pred EEEEEECCC-CcEEEEEeCCCCeeEEEECCCCCEEEEEe-CCCCEEEEEccCCc--eeEEEEEeCCCCCcceEEeeeecC
Confidence 789999987 45544555557899999999999999887 56899999998653 12222223345788888864
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEec-----------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-----------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR 253 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~-----------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~ 253 (395)
.++.||.+....+.+...+............ ....+..++.++....++|+..+ ...|........ .
T Consensus 119 DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~-~~~i~~~~~~~~-~ 196 (426)
T d1hzua2 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-TGKVLLVNYKDI-D 196 (426)
T ss_dssp TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-TTEEEEEECSSS-S
T ss_pred CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC-CCeEEEEEeccc-c
Confidence 5778999998889999999888766554432 12345678888888888888844 566666655431 2
Q ss_pred ceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 254 HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 254 ~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
...+-.......|.+++++..++++|++....+.+...+.......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~ 242 (426)
T d1hzua2 197 NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS 242 (426)
T ss_dssp SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEE
T ss_pred ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEE
Confidence 2222222334579999999999999999988888888876654443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.39 E-value=2e-06 Score=83.31 Aligned_cols=158 Identities=8% Similarity=-0.029 Sum_probs=105.8
Q ss_pred EEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeE--------------
Q psy13629 134 IDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKL-------------- 199 (395)
Q Consensus 134 l~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I-------------- 199 (395)
.+..++++.||++|..+++|.+++++... ..+.+.......|.|+++.+.++.+|++......+
T Consensus 77 t~gtpDGr~lfV~d~~~~rVavIDl~t~k--~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~ 154 (441)
T d1qnia2 77 TDGRYDGKYLFINDKANTRVARIRLDIMK--TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS 154 (441)
T ss_dssp ETTEEEEEEEEEEETTTTEEEEEETTTTE--EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred ecccCCCCEEEEEcCCCCEEEEEECCCCc--EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence 33456789999999999999999998652 12333345578999999999899999987544443
Q ss_pred ----EEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCC-------------CeEEEEe---------------
Q psy13629 200 ----EVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEV-------------PKIERGA--------------- 247 (395)
Q Consensus 200 ----~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~-------------~~I~~~~--------------- 247 (395)
.+.+.......-.+ .....|.+++++|+.+++|++..... ..|...+
T Consensus 155 ~~~~~~iD~~t~~v~~qI-~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~ 233 (441)
T d1qnia2 155 YTMFTAIDAETMDVAWQV-IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKT 233 (441)
T ss_dssp EEEEEEEETTTCSEEEEE-EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBC
T ss_pred cceEEeecCccceeeEEE-ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEE
Confidence 33555544433222 12357999999999999999985421 1111111
Q ss_pred --------cCCCC-cceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccc
Q psy13629 248 --------MNGDP-RHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 248 --------~dG~~-~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
+++.. ......+. .-..|+|+.++++++++|++....++|++++++-
T Consensus 234 v~~~~v~vvd~~~~~~v~~~IP-vgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 234 IGDSKVPVVDGRGESEFTRYIP-VPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp CTTCCCCEEECSSSCSSEEEEC-CBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred eCCCCcEEEEcccCCceEEEEe-CCCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence 01100 01111111 1247999999999999999999999999999754
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.30 E-value=3.4e-05 Score=72.07 Aligned_cols=120 Identities=16% Similarity=0.133 Sum_probs=84.6
Q ss_pred CCcceEEEec---CCCeEEEEeC--CCCeEEEEECCCCce-----EEEEecCCCCceeEEEeCCCCeEEEEeeCC-----
Q psy13629 175 ITPDGLAIDW---LTEKLYWTDS--ETNKLEVSSLDGKKR-----KVLYWEDIDQPRAIALVPQDSIMFWTDWGE----- 239 (395)
Q Consensus 175 ~~p~glAVD~---~~~~LYwtd~--~~~~I~v~~ldg~~~-----~~l~~~~~~~P~~iavdp~~g~LYwtd~~~----- 239 (395)
-.|.||.+-. ....||+.+. ...+|+++.++.... ..+....+..|++|++.. .+.+|+|+...
T Consensus 97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~ 175 (340)
T d1v04a_ 97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPY 175 (340)
T ss_dssp CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHH
T ss_pred eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChh
Confidence 4799998732 1237888884 567888887754332 222234578899999997 56799996321
Q ss_pred ---------CCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeecccccee
Q psy13629 240 ---------VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVR 298 (395)
Q Consensus 240 ---------~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~ 298 (395)
.+...+...++ ...++ +.+++..||||+++.+++.||+++....+|.+.++++...
T Consensus 176 ~~~~e~~~~~~~g~v~~~~~--~~~~~-~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~ 240 (340)
T d1v04a_ 176 LKSWEMHLGLAWSFVTYYSP--NDVRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT 240 (340)
T ss_dssp HHHHHHHTTCCCEEEEEECS--SCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred hhhhhHhhcCCceeEEEEcC--CceEE-EcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc
Confidence 13445566666 34444 4456789999999999999999999999999888876543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=98.13 E-value=5e-05 Score=73.63 Aligned_cols=159 Identities=17% Similarity=0.152 Sum_probs=107.0
Q ss_pred CccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-CC-------CCCcceEEEec---CCC
Q psy13629 119 LKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-NG-------LITPDGLAIDW---LTE 187 (395)
Q Consensus 119 ~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-~~-------~~~p~glAVD~---~~~ 187 (395)
.+.+.++.++.+|.+|+|.+++ +||+++...++|++++.++. ....+.. .. ...--|||+|+ .++
T Consensus 17 f~~~~ia~~L~~P~~la~~pdg-~llVter~~G~i~~v~~~~g---~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~ 92 (450)
T d1crua_ 17 FDKKVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESG---SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNP 92 (450)
T ss_dssp SCEEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTC---CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSC
T ss_pred cEEEEEECCCCCceEEEEeCCC-eEEEEEecCCEEEEEECCCC---cEeecccCCccccccCCCCceeeEEeCCCCccCC
Confidence 4567788899999999999875 68999977899999987664 2232222 11 12234799997 468
Q ss_pred eEEEEeC---------C---CCeEEEEECCCCc-----eEEEEe----cCCCCceeEEEeCCCCeEEEEeeCC-------
Q psy13629 188 KLYWTDS---------E---TNKLEVSSLDGKK-----RKVLYW----EDIDQPRAIALVPQDSIMFWTDWGE------- 239 (395)
Q Consensus 188 ~LYwtd~---------~---~~~I~v~~ldg~~-----~~~l~~----~~~~~P~~iavdp~~g~LYwtd~~~------- 239 (395)
.||++-. . ...+.+...++.. .+.++. ...+.-..|+++| .|+||++- |+
T Consensus 93 ~iYvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~-Gd~~~~~~~ 170 (450)
T d1crua_ 93 YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTI-GDQGRNQLA 170 (450)
T ss_dssp EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEE-CCTTTTSGG
T ss_pred EEEEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEe-cCCCccccc
Confidence 8888641 1 1134455544432 223332 2246677899998 56899986 31
Q ss_pred -------------------------CCeEEEEecCCCCc--------ceEEEEecCCcCceeEEEeccccEEEEeccc
Q psy13629 240 -------------------------VPKIERGAMNGDPR--------HRKVIVDSTIFWPNGIAIDFNNRLLYWIDGR 284 (395)
Q Consensus 240 -------------------------~~~I~~~~~dG~~~--------~~~~lv~~~~~~P~glalD~~~~rLYwaD~~ 284 (395)
..+|.|++.||... .+..+....++.|.||++|. +++||++|.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p-~g~l~~~e~G 247 (450)
T d1crua_ 171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQG 247 (450)
T ss_dssp GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEEC
T ss_pred ccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecc-cceeeecccc
Confidence 26899999998421 01235677889999999996 6889999864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.07 E-value=0.00015 Score=64.55 Aligned_cols=136 Identities=10% Similarity=-0.062 Sum_probs=94.0
Q ss_pred EEEECCCCeEEEEEccCCCCCceEEEEeC-CCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecC-----C
Q psy13629 144 CWTDHGTEMISCCTFDGNNVGSKHNVITN-GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED-----I 217 (395)
Q Consensus 144 ywsd~~~~~I~~~~~dg~~~~~~~~i~~~-~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~-----~ 217 (395)
+++...+++|..+++.... ...++... ....|.+|++++.++.||++....+.|.+.|+........+... .
T Consensus 4 ~vt~~~d~~v~v~D~~s~~--~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMA--VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEETTTEEEEEETTTTE--EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEcCCCEEEEEECCCCe--EEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 4455567888888887642 12223322 34679999999988999999988899999999876554433221 3
Q ss_pred CCceeEEEeCCCCeEEEEeeC----------CCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccc
Q psy13629 218 DQPRAIALVPQDSIMFWTDWG----------EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGR 284 (395)
Q Consensus 218 ~~P~~iavdp~~g~LYwtd~~----------~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~ 284 (395)
..+.+++++|..+++|++... ....+...+... ......+ .....|++++++.+++++|+++..
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~ 155 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET--LSRRKAF-EAPRQITMLAWARDGSKLYGLGRD 155 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT--TEEEEEE-ECCSSCCCEEECTTSSCEEEESSS
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC--CeEEEec-cccCCceEEEEcCCCCEEEEEcCC
Confidence 568899999999999998742 134566666654 2222122 223479999999999999998743
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.07 E-value=6.5e-05 Score=67.40 Aligned_cols=102 Identities=9% Similarity=-0.016 Sum_probs=77.1
Q ss_pred EEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEE
Q psy13629 133 AIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL 212 (395)
Q Consensus 133 gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l 212 (395)
|++++..++.|+..+ .++.|..++++... ...++.......|.++++++.++.+|+++...+.|.+.++........
T Consensus 1 g~a~~~~~~~l~~~~-~~~~v~v~D~~t~~--~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTN-YPNNLHVVDVASDT--VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCCTTCEEEEEEE-TTTEEEEEETTTTE--EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CccCCCCCcEEEEEc-CCCEEEEEECCCCC--EEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence 467777666666555 77899999998652 223333444568999999999999999999899999999987766544
Q ss_pred EecC------CCCceeEEEeCCCCeEEEEee
Q psy13629 213 YWED------IDQPRAIALVPQDSIMFWTDW 237 (395)
Q Consensus 213 ~~~~------~~~P~~iavdp~~g~LYwtd~ 237 (395)
+... ...|.+++++|+.++||++..
T Consensus 78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred ecccccccccCCceEEEEEecCCCEEEEEec
Confidence 4322 246899999999999999873
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.00 E-value=0.00051 Score=61.71 Aligned_cols=164 Identities=9% Similarity=0.047 Sum_probs=116.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC-CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT-EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~-~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
+|.+.++.+ ..... ......+.+++|+++++.|+++.... +.|+..+.++. . ...+......+..+++.+.+.
T Consensus 25 ~v~v~d~~~-~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~---~-~~~~~~~~~~v~~~~~spdg~ 98 (360)
T d1k32a3 25 QAFIQDVSG-TYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG---K-AEKFEENLGNVFAMGVDRNGK 98 (360)
T ss_dssp EEEEECTTS-SBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC---C-EEECCCCCCSEEEEEECTTSS
T ss_pred eEEEEECCC-CcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC---c-EEEeeCCCceEEeeeeccccc
Confidence 677788766 44444 35677899999999999998775444 46888888875 2 334445566788999999777
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeC--------CCCeEEEEecCCCCcceEEEE
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWG--------EVPKIERGAMNGDPRHRKVIV 259 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~--------~~~~I~~~~~dG~~~~~~~lv 259 (395)
.|..+. ..+.+...++++.....+..........++++|.+.+|.++... ....+...++.+ . ....+
T Consensus 99 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~--~-~~~~~ 174 (360)
T d1k32a3 99 FAVVAN-DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG--R-KIFAA 174 (360)
T ss_dssp EEEEEE-TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--T-EEEEC
T ss_pred ccceec-cccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeecccc--C-ceeee
Confidence 777555 56789999999988877776666778899999999999887632 123466667765 2 22333
Q ss_pred ecCCcCceeEEEeccccEEEEec
Q psy13629 260 DSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 260 ~~~~~~P~glalD~~~~rLYwaD 282 (395)
..+.....++++.+++++|++.-
T Consensus 175 ~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 175 TTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp SCSSSBEEEEEECTTSCEEEEEE
T ss_pred cccccccccccccCCCCEEEEEe
Confidence 33344567788888888888764
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.82 E-value=0.00045 Score=61.34 Aligned_cols=124 Identities=10% Similarity=0.022 Sum_probs=92.2
Q ss_pred EEEEeeCCCCCccEEec--C-CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCC----CCCcceEE
Q psy13629 109 DIRIANLSRPLKPVTII--K-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNG----LITPDGLA 181 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~--~-~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~----~~~p~glA 181 (395)
.|.++|+.. .+....+ + ....+.+++|+++++.||.++..++.|..++++... ....+.... ...+.+++
T Consensus 12 ~v~v~D~~s-~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~v~ 88 (337)
T d1pbyb_ 12 KLVVIDTEK-MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAA 88 (337)
T ss_dssp EEEEEETTT-TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEE
T ss_pred EEEEEECCC-CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc--EEEEEecCCCcccccceeeEE
Confidence 678888876 3433222 2 345688999999999999999888999999998652 222222221 24688999
Q ss_pred EecCCCeEEEEeC-----------CCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEe
Q psy13629 182 IDWLTEKLYWTDS-----------ETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 182 VD~~~~~LYwtd~-----------~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd 236 (395)
+.+.++.+|++.. ....+.+.+.........+ .....|.+++++|+++++|+++
T Consensus 89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~ 153 (337)
T d1pbyb_ 89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF-EAPRQITMLAWARDGSKLYGLG 153 (337)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE-ECCSSCCCEEECTTSSCEEEES
T ss_pred EcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec-cccCCceEEEEcCCCCEEEEEc
Confidence 9999999999873 3567888888877666555 4457799999999999999876
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.75 E-value=0.001 Score=60.51 Aligned_cols=159 Identities=7% Similarity=-0.152 Sum_probs=108.1
Q ss_pred CeEEEEEEcCCCEEEEEECCC----CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCC---------C
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGT----EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE---------T 196 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~----~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~---------~ 196 (395)
....+++.++++++|.++... ..|+.++.+... ....+. ...+.++++.+.++.||++... .
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~---~~~~~~--~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~ 96 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGS---ILGHVN--GGFLPNPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred CccccccCCCCCEEEEEcccccCCCceEEEEECCCCC---EEEEEe--CCCCccEEEcCCCCEEEEEeecCCcccccccc
Confidence 356678899999999986532 467777665432 122222 2344589999999999998742 4
Q ss_pred CeEEEEECCCCceEEEEec-------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeE
Q psy13629 197 NKLEVSSLDGKKRKVLYWE-------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGI 269 (395)
Q Consensus 197 ~~I~v~~ldg~~~~~l~~~-------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~gl 269 (395)
+.|.+.|+.+......+.. ....|+++++++..+.+|+..+.....+...+.+. .+.. .....|.++
T Consensus 97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~ 170 (373)
T d2madh_ 97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG----SSDD--QLLSSPTCY 170 (373)
T ss_pred eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC----CeEE--EEeccceeE
Confidence 6788888887655433321 24568899999999999988876555565555554 1111 122358889
Q ss_pred EEeccccEEEEeccceeeeeeeccccceee
Q psy13629 270 AIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 270 alD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
++...++++|++....+.+...+.++....
T Consensus 171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~ 200 (373)
T d2madh_ 171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAG 200 (373)
T ss_pred EEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence 998888999999888888888776654443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.70 E-value=0.00052 Score=65.08 Aligned_cols=150 Identities=10% Similarity=-0.013 Sum_probs=101.6
Q ss_pred CCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCC-------------------CeE
Q psy13629 139 KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSET-------------------NKL 199 (395)
Q Consensus 139 ~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~-------------------~~I 199 (395)
+++.||..|..+++|.|++++.-. ..+.+.......+.|+.+....+..|+..... +.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fk--t~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~ 175 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMK--CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 175 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTE--EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred ceeEEEEEcCCCceEEEEECccee--eeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence 578999999999999999999752 22344455678899999976667777775222 234
Q ss_pred EEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCC------------------------------------CeE
Q psy13629 200 EVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEV------------------------------------PKI 243 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~------------------------------------~~I 243 (395)
.+.|.+.....--+ .-..+|.+++++++.+++|+|..... ..+
T Consensus 176 t~ID~~tm~V~~QV-~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV 254 (459)
T d1fwxa2 176 TAVDADKWEVAWQV-LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 254 (459)
T ss_dssp EEEETTTTEEEEEE-EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEecCCceEEEEe-eeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence 56666654443222 12347899999999999999974311 112
Q ss_pred EEEecC---CCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccc
Q psy13629 244 ERGAMN---GDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 244 ~~~~~d---G~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
..++.. +....+.+-+. ..|+|+.++++++.+|++..-.+.++++++.
T Consensus 255 ~VVD~~~~~~~~v~~yIPVp---KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~ 305 (459)
T d1fwxa2 255 KVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT 305 (459)
T ss_dssp EEEECSGG--CSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred eeecccccCCcceeEEEecC---CCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence 223221 10011112222 3699999999999999999999999999985
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.70 E-value=0.00025 Score=68.13 Aligned_cols=104 Identities=12% Similarity=0.009 Sum_probs=76.4
Q ss_pred cCCCeEEEEeCCCCeEEEEECCCCceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCCC-----------------eEEE
Q psy13629 184 WLTEKLYWTDSETNKLEVSSLDGKKRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEVP-----------------KIER 245 (395)
Q Consensus 184 ~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~~-----------------~I~~ 245 (395)
+.++.||++|..+++|.|.+++...+..++. .....|++++++|+.+++|++.+++.. .+..
T Consensus 81 pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~ 160 (441)
T d1qnia2 81 YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA 160 (441)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence 5588999999999999999999877766553 457899999999999999998765321 1233
Q ss_pred EecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccceeeeee
Q psy13629 246 GAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEV 290 (395)
Q Consensus 246 ~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~ 290 (395)
++........++.+.. .|.+++++++++.+|+++.+.+.+..
T Consensus 161 iD~~t~~v~~qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~ 202 (441)
T d1qnia2 161 IDAETMDVAWQVIVDG---NLDNTDADYTGKYATSTCYNSERAVD 202 (441)
T ss_dssp EETTTCSEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSS
T ss_pred ecCccceeeEEEecCC---CccceEECCCCCEEEEEecCCCceEE
Confidence 4444322223344433 59999999999999999877655433
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.68 E-value=0.01 Score=52.97 Aligned_cols=180 Identities=4% Similarity=-0.111 Sum_probs=116.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|.+.+++.......+......+.+++|++.++.|. +...++.|..+++...... ........-..+.++++.+.+..
T Consensus 39 ~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~la-tg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~v~~s~d~~~ 116 (311)
T d1nr0a1 39 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA-SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESKR 116 (311)
T ss_dssp EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSCE
T ss_pred EEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEe-ccccCceEeeeeeeccccc-cccccccccCccccccccccccc
Confidence 567777776444455566678899999999887765 4447889999998875321 12233333456788999886666
Q ss_pred EEEEeCC-CCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 189 LYWTDSE-TNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 189 LYwtd~~-~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
|..+-.. ...+.+.+++.......+.......+.++++|.+.+++++- +....|...++.. .........+-...+
T Consensus 117 l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sg-s~d~~i~i~d~~~--~~~~~~~~~~~~~i~ 193 (311)
T d1nr0a1 117 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG-SDDNTVAIFEGPP--FKFKSTFGEHTKFVH 193 (311)
T ss_dssp EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEE-ETTSCEEEEETTT--BEEEEEECCCSSCEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccceeeeccc-ccccccccccccc--ccccccccccccccc
Confidence 6655432 34577888876544333323345678999999888888775 3345677778776 344444444455678
Q ss_pred eEEEeccccEEEEeccceeeeeeeccc
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~~d 294 (395)
.++++++++.|+.+. ..+.|...+..
T Consensus 194 ~v~~~p~~~~l~~~~-~d~~v~~~d~~ 219 (311)
T d1nr0a1 194 SVRYNPDGSLFASTG-GDGTIVLYNGV 219 (311)
T ss_dssp EEEECTTSSEEEEEE-TTSCEEEEETT
T ss_pred ccccCcccccccccc-ccccccccccc
Confidence 899988777666554 34555555543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=97.51 E-value=0.0061 Score=57.62 Aligned_cols=148 Identities=10% Similarity=-0.019 Sum_probs=103.7
Q ss_pred ccCCCCcee------EEEEEeeCCCCC-ccEEecCCCCCeEEEEEE----cCCCEEEEEECCCCeEEEEEccCCCCCceE
Q psy13629 99 KLQPDGAYL------LDIRIANLSRPL-KPVTIIKDLEEGAAIDYY----YKKSMVCWTDHGTEMISCCTFDGNNVGSKH 167 (395)
Q Consensus 99 ~~~~~~~~~------~~I~~~~l~~~~-~~~~~~~~~~~~~gl~~d----~~~~~lywsd~~~~~I~~~~~dg~~~~~~~ 167 (395)
..+||+.++ ..++++++.... .....++....+.+++++ ++++.||.+....+.|..++.+... ..
T Consensus 68 ~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~---~~ 144 (432)
T d1qksa2 68 RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE---PK 144 (432)
T ss_dssp EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC---EE
T ss_pred EECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc---ce
Confidence 455665554 267888886522 233445556677787765 4788999999889999999987652 22
Q ss_pred EEEeC-----------CCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEE-ecCCCCceeEEEeCCCCeEEEE
Q psy13629 168 NVITN-----------GLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLY-WEDIDQPRAIALVPQDSIMFWT 235 (395)
Q Consensus 168 ~i~~~-----------~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~-~~~~~~P~~iavdp~~g~LYwt 235 (395)
..... ....+.+++.++.+..+|++....+.|.+.+........+. -.....|.+++++|+.+++|.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va 224 (432)
T d1qksa2 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA 224 (432)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE
T ss_pred eeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEe
Confidence 22211 11344567888888899999999999999998764433222 1456789999999999999998
Q ss_pred eeCCCCeEEEEecCC
Q psy13629 236 DWGEVPKIERGAMNG 250 (395)
Q Consensus 236 d~~~~~~I~~~~~dG 250 (395)
. .....|...+.+.
T Consensus 225 ~-~~~~~v~v~d~~~ 238 (432)
T d1qksa2 225 A-NARNKLVVIDTKE 238 (432)
T ss_dssp E-GGGTEEEEEETTT
T ss_pred c-cccceEEEeeccc
Confidence 8 4467888888876
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.022 Score=48.89 Aligned_cols=185 Identities=8% Similarity=0.101 Sum_probs=109.3
Q ss_pred eeEEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC--CeEEEEEccCCCCCceEEEEeCCCCCcceEEEe
Q psy13629 106 YLLDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAID 183 (395)
Q Consensus 106 ~~~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~--~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD 183 (395)
+..+|.++|.+| .+...+..........+|+|++++|.++.... ..++....++.. .. ...............
T Consensus 17 ~~~~l~i~d~dG-~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~s 91 (269)
T d2hqsa1 17 FPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VR-QVASFPRHNGAPAFS 91 (269)
T ss_dssp CCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EE-EEECCSSCEEEEEEC
T ss_pred ceEEEEEEcCCC-CCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc---ee-EEeeeecccccceec
Confidence 345789999999 56666666666677889999999997775443 356666666542 22 222222222333333
Q ss_pred cCCC--------------------------------------------eEEEEeC--CCCeEEEEECCCCceEEEEecCC
Q psy13629 184 WLTE--------------------------------------------KLYWTDS--ETNKLEVSSLDGKKRKVLYWEDI 217 (395)
Q Consensus 184 ~~~~--------------------------------------------~LYwtd~--~~~~I~v~~ldg~~~~~l~~~~~ 217 (395)
+.+. .++++.. +...|.+.++++.....+. ...
T Consensus 92 pdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-~~~ 170 (269)
T d2hqsa1 92 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-WEG 170 (269)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-CSS
T ss_pred CCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeee-ccc
Confidence 3332 3333321 2234555566555444333 223
Q ss_pred CCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEec--cceeeeeeeccc
Q psy13629 218 DQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID--GRLTFIEVMDYD 294 (395)
Q Consensus 218 ~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD--~~~~~I~~~~~d 294 (395)
........+|....+++.... ....|...+.++ ...+++.... .-....+.+++++|+++. .....++.++++
T Consensus 171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~--~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d 246 (269)
T d2hqsa1 171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--GGVQVLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 246 (269)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT--CCEEECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ccccccccccccceeEEEeecCCceeeeEeeccc--ccceEeecCc--cccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 344556788888887777644 455677777776 4444433322 223457888999997764 335678899999
Q ss_pred cceeee
Q psy13629 295 GYVRLV 300 (395)
Q Consensus 295 G~~~~~ 300 (395)
|...+.
T Consensus 247 g~~~~~ 252 (269)
T d2hqsa1 247 GRFKAR 252 (269)
T ss_dssp SCCEEE
T ss_pred CCCEEE
Confidence 987654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=97.46 E-value=0.00078 Score=59.96 Aligned_cols=104 Identities=13% Similarity=0.022 Sum_probs=72.2
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEE
Q psy13629 179 GLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKV 257 (395)
Q Consensus 179 glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~ 257 (395)
|+|+...++.|+ +....++|.+.|++.......+. .....|.+++++|++++||++. .....|...+++.. .....
T Consensus 1 g~a~~~~~~~l~-~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~-~~~~~v~~~d~~t~-~~~~~ 77 (346)
T d1jmxb_ 1 GPALKAGHEYMI-VTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN-NHYGDIYGIDLDTC-KNTFH 77 (346)
T ss_dssp CCCCCTTCEEEE-EEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE-TTTTEEEEEETTTT-EEEEE
T ss_pred CccCCCCCcEEE-EEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEE-CCCCcEEEEeCccC-eeeee
Confidence 566776444544 45556899999998775544332 4456799999999999999998 44678999998752 11111
Q ss_pred EEe-cC----CcCceeEEEeccccEEEEeccce
Q psy13629 258 IVD-ST----IFWPNGIAIDFNNRLLYWIDGRL 285 (395)
Q Consensus 258 lv~-~~----~~~P~glalD~~~~rLYwaD~~~ 285 (395)
+.. .. ...|.++++++++++||+++...
T Consensus 78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~ 110 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPT 110 (346)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEE
T ss_pred ecccccccccCCceEEEEEecCCCEEEEEecCC
Confidence 111 11 23589999999999999997543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.44 E-value=0.0012 Score=59.18 Aligned_cols=139 Identities=11% Similarity=0.023 Sum_probs=99.0
Q ss_pred EEEEEEc-CCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCC-CCeEEEEECCCCce
Q psy13629 132 AAIDYYY-KKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKR 209 (395)
Q Consensus 132 ~gl~~d~-~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~-~~~I~v~~ldg~~~ 209 (395)
.+-+|+| +++.+-++ ..+.|+.++.++. .... ......+.+++..+.++.|+++... ...|.+.++++...
T Consensus 6 ~~~~fSP~dG~~~a~~--~~g~v~v~d~~~~---~~~~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFV--SRGQAFIQDVSGT---YVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA 78 (360)
T ss_dssp GEEEEEECGGGCEEEE--ETTEEEEECTTSS---BEEE--CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred hcccccCCCCCEEEEE--ECCeEEEEECCCC---cEEE--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE
Confidence 4567888 45544433 3468888888775 2222 2345578899999988888876543 35789999988776
Q ss_pred EEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEec
Q psy13629 210 KVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 210 ~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD 282 (395)
+.+. .....+.+++++|+..+|..+. . ...+...++++ .....+...+......+++.++++.|.++.
T Consensus 79 ~~~~-~~~~~v~~~~~spdg~~l~~~~-~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~spdg~~la~~~ 146 (360)
T d1k32a3 79 EKFE-ENLGNVFAMGVDRNGKFAVVAN-D-RFEIMTVDLET--GKPTVIERSREAMITDFTISDNSRFIAYGF 146 (360)
T ss_dssp EECC-CCCCSEEEEEECTTSSEEEEEE-T-TSEEEEEETTT--CCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred EEee-CCCceEEeeeecccccccceec-c-ccccccccccc--cceeeeeecccccccchhhccceeeeeeec
Confidence 6554 5667789999999888887665 2 56788888887 455555555555677899998888888765
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.44 E-value=0.003 Score=56.67 Aligned_cols=149 Identities=9% Similarity=-0.084 Sum_probs=93.8
Q ss_pred EEcCCCEEEEEECC----CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeC---------CCCeEEEE
Q psy13629 136 YYYKKSMVCWTDHG----TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDS---------ETNKLEVS 202 (395)
Q Consensus 136 ~d~~~~~lywsd~~----~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~---------~~~~I~v~ 202 (395)
..++++++|+++.. .+.|+.++.+... ...++.. ....++++.+.++.||+++. ..+.|.+.
T Consensus 9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~--~~~~~~~---g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~ 83 (355)
T d2bbkh_ 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDG---GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVF 83 (355)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEEE---CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eCCCCCEEEEEecccCCCcCeEEEEECCCCc--EEEEEEC---CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence 45788899998753 3468888887642 1122222 23448999999999999873 24578999
Q ss_pred ECCCCceEEEEec-------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC------CcCceeE
Q psy13629 203 SLDGKKRKVLYWE-------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST------IFWPNGI 269 (395)
Q Consensus 203 ~ldg~~~~~l~~~-------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~------~~~P~gl 269 (395)
|+.+......+.. ....|++++++|.++++|+.++.....+...+.... .....+-... ...+..+
T Consensus 84 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T d2bbkh_ 84 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDVPDCYHIFPTAPDTFF 162 (355)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCSEEEEEEEETTEEE
T ss_pred ECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCC-cEeeEEecCCcceEeecCCcceE
Confidence 9887665543321 245799999999999999998765566666666541 1111111100 1123446
Q ss_pred EEeccccEEEEeccceeeeee
Q psy13629 270 AIDFNNRLLYWIDGRLTFIEV 290 (395)
Q Consensus 270 alD~~~~rLYwaD~~~~~I~~ 290 (395)
++..+++.++|.......+..
T Consensus 163 ~~~~dg~~~~v~~~~~~~~~~ 183 (355)
T d2bbkh_ 163 MHCRDGSLAKVAFGTEGTPEI 183 (355)
T ss_dssp EEETTSCEEEEECCSSSCCEE
T ss_pred EEcCCCCEEEEEecCCCeEEE
Confidence 677677777777655544433
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.39 E-value=0.0065 Score=54.32 Aligned_cols=127 Identities=9% Similarity=-0.105 Sum_probs=83.3
Q ss_pred EEEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC---------CCeEEEEEccCCCCCceEEEEeC------
Q psy13629 108 LDIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG---------TEMISCCTFDGNNVGSKHNVITN------ 172 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~---------~~~I~~~~~dg~~~~~~~~i~~~------ 172 (395)
..+.++|.+. .+....++. +...+++|+++++.||+++.. ++.|..++..... ....+...
T Consensus 28 ~~v~v~D~~t-g~~~~~~~~-g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~~~~~~~~~~~ 103 (355)
T d2bbkh_ 28 TQQFVIDGEA-GRVIGMIDG-GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFL 103 (355)
T ss_dssp EEEEEEETTT-TEEEEEEEE-CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCC
T ss_pred CeEEEEECCC-CcEEEEEEC-CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC--EEEEEecCCcceee
Confidence 4688888876 443333332 233379999999999998642 3567777776542 22233222
Q ss_pred CCCCcceEEEecCCCeEEEEeCC-CCeEEEEECCCCceEEEEecC-------CCCceeEEEeCCCCeEEEEeeC
Q psy13629 173 GLITPDGLAIDWLTEKLYWTDSE-TNKLEVSSLDGKKRKVLYWED-------IDQPRAIALVPQDSIMFWTDWG 238 (395)
Q Consensus 173 ~~~~p~glAVD~~~~~LYwtd~~-~~~I~v~~ldg~~~~~l~~~~-------~~~P~~iavdp~~g~LYwtd~~ 238 (395)
....|.++++.+.++.+|+++.. ...+.+.+.........+... ...+..+++.++.+.++|..+.
T Consensus 104 ~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~ 177 (355)
T d2bbkh_ 104 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT 177 (355)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred cCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecC
Confidence 13568999999999999998854 456777777665544333211 2345668889888889888755
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.26 E-value=0.0041 Score=56.84 Aligned_cols=195 Identities=7% Similarity=-0.008 Sum_probs=109.6
Q ss_pred EEEEEeeCCCCCccEEe--cC------CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCC-----
Q psy13629 108 LDIRIANLSRPLKPVTI--IK------DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGL----- 174 (395)
Q Consensus 108 ~~I~~~~l~~~~~~~~~--~~------~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~----- 174 (395)
..|+++|... .+.+.. .+ ....+.+++|++++++||+++...+.|..+++..... ...+-....
T Consensus 96 ~~v~v~D~~t-~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~ 172 (368)
T d1mdah_ 96 DYVEVFDPVT-FLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHP 172 (368)
T ss_dssp EEEEEECTTT-CCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEE
T ss_pred CeEEEEECCC-CcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE--eEEeeccCcceEcc
Confidence 3588888766 332222 21 2345678999999999999998888888888765421 111110000
Q ss_pred ---------------------------------------CCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEec
Q psy13629 175 ---------------------------------------ITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE 215 (395)
Q Consensus 175 ---------------------------------------~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~ 215 (395)
..+...+.+. .+.++++. .+++.++++++.....+...
T Consensus 173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--~~~v~~~~~~~~~~~~~~~~ 249 (368)
T d1mdah_ 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY-PGMLVWAV--ASSILQGDIPAAGATMKAAI 249 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT-TTEEEECB--SSCCEEEECCSSCCEEECCC
T ss_pred CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc-CcEEEEec--CCCEEEEeecCCceEEEeec
Confidence 0111122221 12222222 23455566555444332211
Q ss_pred C------------CCCceeEEEeCCCCeEEEEeeCC-------CCeEEEEecCCCCcceEEEEecCCcCceeEEEecccc
Q psy13629 216 D------------IDQPRAIALVPQDSIMFWTDWGE-------VPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNR 276 (395)
Q Consensus 216 ~------------~~~P~~iavdp~~g~LYwtd~~~-------~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~ 276 (395)
. ...+..+++++..+.+|++.-.. ..+|..++.... +.+-.-..-..|.+++++++++
T Consensus 250 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~---~~~~~~~~~~~~~~~a~spDG~ 326 (368)
T d1mdah_ 250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPISNGHDSDAIIAAQDGA 326 (368)
T ss_dssp CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCEEEEEECEEEECCSSS
T ss_pred ccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC---cEeEEecCCCceeEEEECCCCC
Confidence 1 12346799999999999985321 145777777652 2111111223689999998876
Q ss_pred -EEEEeccceeeeeeeccccceee-eeeece-e-eeeee
Q psy13629 277 -LLYWIDGRLTFIEVMDYDGYVRL-VTSLGH-I-NLELY 311 (395)
Q Consensus 277 -rLYwaD~~~~~I~~~~~dG~~~~-~t~~g~-~-~i~Lf 311 (395)
.||.+....+.|...|......+ ...++. | .|++.
T Consensus 327 ~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~ 365 (368)
T d1mdah_ 327 SDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ 365 (368)
T ss_dssp CEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred EEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEEe
Confidence 68999988899999997544333 333332 4 55543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.18 E-value=0.0062 Score=57.00 Aligned_cols=153 Identities=10% Similarity=-0.038 Sum_probs=100.3
Q ss_pred EEEEcC-CCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEE
Q psy13629 134 IDYYYK-KSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVL 212 (395)
Q Consensus 134 l~~d~~-~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l 212 (395)
..++.+ .+.++++...+++|..+++... .....+.. ...|.++++.+.++.||.++. .+.|.+.++++.....+
T Consensus 24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~---~~~~~l~~-g~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~~~~ 98 (426)
T d1hzua2 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSK---KIVKVIDT-GYAVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKV 98 (426)
T ss_dssp CCSCCCGGGEEEEEETTTTEEEEEETTTC---SEEEEEEC-CSSEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEE
T ss_pred ccccCCCCeEEEEEEcCCCEEEEEECCCC---cEEEEEeC-CCCeeEEEECCCCCEEEEEeC-CCCEEEEEccCCceeEE
Confidence 334444 3455687888899999999865 22233333 357999999999999998875 57899999987665433
Q ss_pred Ee-cCCCCceeEEEeC----CCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecC-----------CcCceeEEEecccc
Q psy13629 213 YW-EDIDQPRAIALVP----QDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDST-----------IFWPNGIAIDFNNR 276 (395)
Q Consensus 213 ~~-~~~~~P~~iavdp----~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~-----------~~~P~glalD~~~~ 276 (395)
.. .....|.++++++ +.++||.+.+. ...+...+... .........+ -..+..++...++.
T Consensus 99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~-~~~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~ 175 (426)
T d1hzua2 99 AEIKIGIEARSVESSKFKGYEDRYTIAGAYW-PPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 175 (426)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEE-SSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred EEEeCCCCCcceEEeeeecCCCCEEEEeecC-CCeEEEEcCCc--cceeEEeeccCCCccceeecCCCceeEEEECCCCC
Confidence 21 4456788888875 67789998754 45666666654 2222222111 12334566677788
Q ss_pred EEEEeccceeeeeeeccc
Q psy13629 277 LLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 277 rLYwaD~~~~~I~~~~~d 294 (395)
.++|++...+.|..++..
T Consensus 176 ~~~~~~~~~~~i~~~~~~ 193 (426)
T d1hzua2 176 EFIVNVKETGKVLLVNYK 193 (426)
T ss_dssp EEEEEETTTTEEEEEECS
T ss_pred EEEEecCCCCeEEEEEec
Confidence 888888777777665543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.16 E-value=0.0098 Score=53.17 Aligned_cols=164 Identities=2% Similarity=-0.136 Sum_probs=104.3
Q ss_pred CCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCc
Q psy13629 129 EEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKK 208 (395)
Q Consensus 129 ~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~ 208 (395)
+.+..+++++.+++|++.. .+.|...+++.. ....+..........+++.+.++.| .+-...+.|.+.++....
T Consensus 18 ~~~~~~a~~~~g~~l~~~~--~~~v~i~~~~~~---~~~~~~~~H~~~v~~~~~sp~g~~l-atg~~dg~i~iwd~~~~~ 91 (311)
T d1nr0a1 18 GTAVVLGNTPAGDKIQYCN--GTSVYTVPVGSL---TDTEIYTEHSHQTTVAKTSPSGYYC-ASGDVHGNVRIWDTTQTT 91 (311)
T ss_dssp TCCCCCEECTTSSEEEEEE--TTEEEEEETTCS---SCCEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEESSSTT
T ss_pred CCeEEEEEcCCCCEEEEEe--CCEEEEEECCCC---ceeEEEcCCCCCEEEEEEeCCCCeE-eccccCceEeeeeeeccc
Confidence 3567789999999998875 456888888754 2233444445678999999865444 566667899999988764
Q ss_pred eE--EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEecccee
Q psy13629 209 RK--VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLT 286 (395)
Q Consensus 209 ~~--~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~ 286 (395)
.. ..+...-....+++++|.+.+|..+-.+....+...+++.. ..... +..+....+.+++++.++.++++-...+
T Consensus 92 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~-~~~~~-l~~h~~~v~~v~~~~~~~~~l~sgs~d~ 169 (311)
T d1nr0a1 92 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG-TSNGN-LTGQARAMNSVDFKPSRPFRIISGSDDN 169 (311)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-CBCBC-CCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred cccccccccccCccccccccccccccccccccccccccccccccc-ccccc-ccccccccccccccccceeeeccccccc
Confidence 32 33333345678999999877776654222333555566541 11111 2223345677888877777777655566
Q ss_pred eeeeeccccceeee
Q psy13629 287 FIEVMDYDGYVRLV 300 (395)
Q Consensus 287 ~I~~~~~dG~~~~~ 300 (395)
.|...+.+......
T Consensus 170 ~i~i~d~~~~~~~~ 183 (311)
T d1nr0a1 170 TVAIFEGPPFKFKS 183 (311)
T ss_dssp CEEEEETTTBEEEE
T ss_pred cccccccccccccc
Confidence 67666666544433
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.11 E-value=0.025 Score=48.59 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=105.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCC-----CeEEEEEccCCCCCceEEEEeC------CCCCc
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGT-----EMISCCTFDGNNVGSKHNVITN------GLITP 177 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~-----~~I~~~~~dg~~~~~~~~i~~~------~~~~p 177 (395)
+|.++++++ ++...+........+..|++++++|.++.... ..|+.++.++. ....+... .....
T Consensus 22 dl~~~d~~~-g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g---~~~~lt~~~~~~~~~~~~~ 97 (281)
T d1k32a2 22 DLWEHDLKS-GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG---EIKRITYFSGKSTGRRMFT 97 (281)
T ss_dssp EEEEEETTT-CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT---EEEECCCCCEEEETTEECS
T ss_pred cEEEEECCC-CCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC---ceEEeeecCCCccCccccc
Confidence 788899988 66667777777888999999999998874321 25888888876 22322221 11234
Q ss_pred ceEEEecCCCeEEEEeCC-----CCeEEEEECCCCceEEEE---------------------------------------
Q psy13629 178 DGLAIDWLTEKLYWTDSE-----TNKLEVSSLDGKKRKVLY--------------------------------------- 213 (395)
Q Consensus 178 ~glAVD~~~~~LYwtd~~-----~~~I~v~~ldg~~~~~l~--------------------------------------- 213 (395)
...+..+.++.||++... ...+...+.++...+...
T Consensus 98 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (281)
T d1k32a2 98 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWI 177 (281)
T ss_dssp EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred cccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeee
Confidence 566677777788877532 123344444433211100
Q ss_pred ----------ecCCCCceeEEEeCCCCeEEE-EeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEec
Q psy13629 214 ----------WEDIDQPRAIALVPQDSIMFW-TDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 214 ----------~~~~~~P~~iavdp~~g~LYw-td~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD 282 (395)
......-.....+ ...+++ .+......|+..+++| ...+.+.......+ ..+.+++++|+|..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~g--~~~~~lt~~~~~~~--~~~SpDG~~I~f~~ 251 (281)
T d1k32a2 178 EVNSGAFKKIVDMSTHVSSPVIV--GHRIYFITDIDGFGQIYSTDLDG--KDLRKHTSFTDYYP--RHLNTDGRRILFSK 251 (281)
T ss_dssp EEETTEEEEEECCSSCCEEEEEE--TTEEEEEECTTSSCEEEEEETTS--CSCEECCCCCSSCE--EEEEESSSCEEEEE
T ss_pred eccccceeeccCCccccceeeee--ccccceecccccccceEEEeCCC--CceEEeecCCCccc--ccCcCCCCEEEEEe
Confidence 0011111112222 223444 3444567899999999 55555544332223 23555688888865
Q ss_pred cceeeeeeeccccceeee
Q psy13629 283 GRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 283 ~~~~~I~~~~~dG~~~~~ 300 (395)
. ..|+.+++++...+.
T Consensus 252 ~--~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 252 G--GSIYIFNPDTEKIEK 267 (281)
T ss_dssp T--TEEEEECTTTCCEEE
T ss_pred C--CEEEEEECCCCCEEE
Confidence 3 468889988876665
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=97.08 E-value=0.046 Score=48.92 Aligned_cols=165 Identities=6% Similarity=-0.069 Sum_probs=98.4
Q ss_pred CCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe---CCCCC--cceEEEecCCCeEEEEeCCCCeEEEE
Q psy13629 128 LEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT---NGLIT--PDGLAIDWLTEKLYWTDSETNKLEVS 202 (395)
Q Consensus 128 ~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~---~~~~~--p~glAVD~~~~~LYwtd~~~~~I~v~ 202 (395)
...+.++++.+.++.+|++...++.+..++.+..... ..... ..... +..++.+. +..+......+++.+.
T Consensus 164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~ 239 (373)
T d2madh_ 164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG--AGLVGAMLTAAQNLLTQPAQANK--SGRIVWPVYSGKILQA 239 (373)
T ss_pred eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee--EEEeeeccccCccceeeeEEECC--CceEEEecCCceEEEE
Confidence 3456788999999999999999999999888765211 11111 11122 33344443 3333333445667777
Q ss_pred ECCCCceEEEEec------------CCCCceeEEEeCCCCeEEEEeeC--------CCCeEEEEecCCCCcceEEEEecC
Q psy13629 203 SLDGKKRKVLYWE------------DIDQPRAIALVPQDSIMFWTDWG--------EVPKIERGAMNGDPRHRKVIVDST 262 (395)
Q Consensus 203 ~ldg~~~~~l~~~------------~~~~P~~iavdp~~g~LYwtd~~--------~~~~I~~~~~dG~~~~~~~lv~~~ 262 (395)
+.++.....+... ....+..+++++..+.+|+.... ....|...+... ... +-.-..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t--~~~-~~~~~~ 316 (373)
T d2madh_ 240 DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--GQT-SSQISL 316 (373)
T ss_pred EcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC--CcE-EEEecC
Confidence 7665443322211 12345678888888888877522 124566666544 111 111122
Q ss_pred CcCceeEEEeccccE-EEEeccceeeeeeeccccceee
Q psy13629 263 IFWPNGIAIDFNNRL-LYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 263 ~~~P~glalD~~~~r-LYwaD~~~~~I~~~~~dG~~~~ 299 (395)
-..|.++++++++++ ||++....+.|...|.......
T Consensus 317 ~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~ 354 (373)
T d2madh_ 317 GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 347999999988775 5778888889999987644433
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.96 E-value=0.0064 Score=55.47 Aligned_cols=124 Identities=6% Similarity=-0.243 Sum_probs=80.0
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECC---------CCeEEEEEccCCCCCceEEEEeC------C
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHG---------TEMISCCTFDGNNVGSKHNVITN------G 173 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~---------~~~I~~~~~dg~~~~~~~~i~~~------~ 173 (395)
.+.++|.++ .+.....+....+ ++++.++++.||+++.. ++.|..++..... ....+... .
T Consensus 47 ~~~~~d~~~-~~~~~~~~~~~~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~i~~p~~~~~~~ 122 (368)
T d1mdah_ 47 ENWVSCAGC-GVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEETTT-TEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCCB
T ss_pred eEEEEeCCC-CcEEEEEeCCCCC-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCc--EeeeecCCccceecc
Confidence 577788766 4433333332333 78999999999998742 3468888776542 22223222 2
Q ss_pred CCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEecC-------CCCceeEEEeCCCCeEEEEe
Q psy13629 174 LITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWED-------IDQPRAIALVPQDSIMFWTD 236 (395)
Q Consensus 174 ~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~-------~~~P~~iavdp~~g~LYwtd 236 (395)
...|.++++.+.++.||+++...+.|.+.++.+......+... ...+..++++++...++|..
T Consensus 123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~ 192 (368)
T d1mdah_ 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEEC
T ss_pred cCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEe
Confidence 3568999999999999999988899999999887665554321 11233355555555555554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.90 E-value=0.0064 Score=58.22 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=75.1
Q ss_pred EEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCceEEEEec-C-C------CCceeEEEeCC---CCeEEEE
Q psy13629 167 HNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKRKVLYWE-D-I------DQPRAIALVPQ---DSIMFWT 235 (395)
Q Consensus 167 ~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~-~-~------~~P~~iavdp~---~g~LYwt 235 (395)
..++..++..|.+|++.+ .++||++++..++|.+.+.++...+.+..- . . .--.+||+||. ++++|++
T Consensus 19 ~~~ia~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs 97 (450)
T d1crua_ 19 KKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (450)
T ss_dssp EEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred EEEEECCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence 456667899999999998 678999998889999999887776665531 1 1 11247999984 7899986
Q ss_pred eeC-----------CCCeEEEEecCCCCc---ceEEEEec----CCcCceeEEEeccccEEEEec
Q psy13629 236 DWG-----------EVPKIERGAMNGDPR---HRKVIVDS----TIFWPNGIAIDFNNRLLYWID 282 (395)
Q Consensus 236 d~~-----------~~~~I~~~~~dG~~~---~~~~lv~~----~~~~P~glalD~~~~rLYwaD 282 (395)
-.. ....|.+...++... ..+.++.. .-+.-..|+++. ++.||++-
T Consensus 98 yt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~ 161 (450)
T d1crua_ 98 GTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTI 161 (450)
T ss_dssp EEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEE
T ss_pred EecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEe
Confidence 421 012355555555211 12233222 224566899985 56799984
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.85 E-value=0.096 Score=47.99 Aligned_cols=190 Identities=14% Similarity=0.117 Sum_probs=112.3
Q ss_pred cCCCCceeE----EEEEeeCCCCCccEEecCCCCCeEEEEEEc----CC---CEEEEEECC--CCeEEEEEccCCCCCce
Q psy13629 100 LQPDGAYLL----DIRIANLSRPLKPVTIIKDLEEGAAIDYYY----KK---SMVCWTDHG--TEMISCCTFDGNNVGSK 166 (395)
Q Consensus 100 ~~~~~~~~~----~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~----~~---~~lywsd~~--~~~I~~~~~dg~~~~~~ 166 (395)
|+.+.++-+ .+.+++++| .....+ ..+++..++.-. .+ ..++.++.. ..+|..+..++... ..
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~G-~~l~~~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~-~l 113 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLEG-KMLHSY--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TL 113 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETTC-CEEEEC--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT-EE
T ss_pred cCccEEEEEcCcCCEEEEcCCC-cEEEec--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc-cc
Confidence 344445543 578899987 333332 356777777542 11 245667654 35676777665421 11
Q ss_pred EEE------EeCCCCCcceEEE--ecCCCeEEE-EeCCCCeEEEEEC--CCC--ceEEEEe--cCCCCceeEEEeCCCCe
Q psy13629 167 HNV------ITNGLITPDGLAI--DWLTEKLYW-TDSETNKLEVSSL--DGK--KRKVLYW--EDIDQPRAIALVPQDSI 231 (395)
Q Consensus 167 ~~i------~~~~~~~p~glAV--D~~~~~LYw-td~~~~~I~v~~l--dg~--~~~~l~~--~~~~~P~~iavdp~~g~ 231 (395)
..+ ....+..+.|+++ +..++.+|. .....+.+..+.+ ++. ....++. ....++.||++|..++.
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGS 193 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCc
Confidence 111 1223456889998 777887653 3444667766554 332 2222221 44678999999999999
Q ss_pred EEEEeeCCCCeEEEEecCCCC-cceEEEEecC----CcCceeEEEecc---ccEEEEeccceeeeeeecccc
Q psy13629 232 MFWTDWGEVPKIERGAMNGDP-RHRKVIVDST----IFWPNGIAIDFN---NRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 232 LYwtd~~~~~~I~~~~~dG~~-~~~~~lv~~~----~~~P~glalD~~---~~rLYwaD~~~~~I~~~~~dG 295 (395)
||+++ . ...|++.+.+-.. ...+.+.... ..-|-||+|=.. ++.|.+++.+.++....+..+
T Consensus 194 LyisE-E-~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 194 LYIAE-E-DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp EEEEE-T-TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EEEec-C-ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence 99998 3 4568887775321 3344443321 346889998643 458888887777665555433
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.14 Score=45.27 Aligned_cols=161 Identities=8% Similarity=-0.074 Sum_probs=105.3
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+..++...............+.+++|++.+..++... .++.|..+++... . ..........+..+++++.++.
T Consensus 164 ~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~-~d~~v~i~d~~~~---~-~~~~~~~~~~i~~l~~~~~~~~ 238 (337)
T d1gxra_ 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREG---R-QLQQHDFTSQIFSLGYCPTGEW 238 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTT---E-EEEEEECSSCEEEEEECTTSSE
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccc---e-eecccccccceEEEEEcccccc
Confidence 567777766333333344566788999999988888776 6788988888764 1 2222223456788999987666
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
|+.. ...+.|.+.+++........ .......+++++|.+.+|+-+. ....|...+... ...+....+......
T Consensus 239 l~~~-~~d~~i~i~d~~~~~~~~~~-~~~~~i~~v~~s~~g~~l~s~s--~Dg~i~iwd~~~---~~~~~~~~~~~~v~~ 311 (337)
T d1gxra_ 239 LAVG-MESSNVEVLHVNKPDKYQLH-LHESCVLSLKFAYCGKWFVSTG--KDNLLNAWRTPY---GASIFQSKESSSVLS 311 (337)
T ss_dssp EEEE-ETTSCEEEEETTSSCEEEEC-CCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTT---CCEEEEEECSSCEEE
T ss_pred ccee-cccccccccccccccccccc-ccccccceEEECCCCCEEEEEe--CCCeEEEEECCC---CCEEEEccCCCCEEE
Confidence 6644 45688999999887765443 3455678999999777665443 245677777654 223333334456777
Q ss_pred EEEeccccEEEEe
Q psy13629 269 IAIDFNNRLLYWI 281 (395)
Q Consensus 269 lalD~~~~rLYwa 281 (395)
++++++++.|..+
T Consensus 312 ~~~s~d~~~l~t~ 324 (337)
T d1gxra_ 312 CDISVDDKYIVTG 324 (337)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEEeCCCCEEEEE
Confidence 8888766666543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.22 Score=43.90 Aligned_cols=177 Identities=8% Similarity=-0.002 Sum_probs=114.1
Q ss_pred EEEEeeCCCCC-cc-EEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPL-KP-VTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~-~~-~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~ 186 (395)
.|++.++.... .. ..+.........+++++.+..++... .++.|...++... ...............+++.+.+
T Consensus 120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~~~~~~~~---~~~~~~~~~~~~v~~l~~s~~~ 195 (337)
T d1gxra_ 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-SDGNIAVWDLHNQ---TLVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc---cccccccccccccccccccccc
Confidence 67778876522 22 22334456678889998877766554 7788999998865 3333333344567788888877
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCc
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWP 266 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P 266 (395)
..++.+. ..+.|.+.++......... .....+..++++|.+.+|+... ....|...+++. ... .....+-...
T Consensus 196 ~~~~~~~-~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~--~d~~i~i~d~~~--~~~-~~~~~~~~~i 268 (337)
T d1gxra_ 196 TKLWTGG-LDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGM--ESSNVEVLHVNK--PDK-YQLHLHESCV 268 (337)
T ss_dssp SEEEEEE-TTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTS--SCE-EEECCCSSCE
T ss_pred ccccccc-ccccccccccccceeeccc-ccccceEEEEEcccccccceec--cccccccccccc--ccc-cccccccccc
Confidence 7776655 4688999998766554444 3456678999999888887655 245677778776 332 2233344467
Q ss_pred eeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 267 NGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 267 ~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
+.+++.+.++.|+-+. .++.|..-+.....
T Consensus 269 ~~v~~s~~g~~l~s~s-~Dg~i~iwd~~~~~ 298 (337)
T d1gxra_ 269 LSLKFAYCGKWFVSTG-KDNLLNAWRTPYGA 298 (337)
T ss_dssp EEEEECTTSSEEEEEE-TTSEEEEEETTTCC
T ss_pred ceEEECCCCCEEEEEe-CCCeEEEEECCCCC
Confidence 8888887776665443 34666666654433
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.40 E-value=0.054 Score=48.08 Aligned_cols=137 Identities=7% Similarity=-0.141 Sum_probs=82.2
Q ss_pred EEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe--CCCCCcceEEEecCCC
Q psy13629 110 IRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT--NGLITPDGLAIDWLTE 187 (395)
Q Consensus 110 I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~--~~~~~p~glAVD~~~~ 187 (395)
+...+++.......+........+++|++.++.+..+...++.|..++..... ....... .....+..+++.+..+
T Consensus 141 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~v~~v~~~pd~~ 218 (325)
T d1pgua1 141 GVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSPDSG 218 (325)
T ss_dssp EEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECSTTC
T ss_pred EEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccc--cceecccccCCCCccEEeeeccccc
Confidence 44556655233333344566788999999888777777678888888776431 1111111 1223467889988778
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEe---CCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALV---PQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavd---p~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
.++.+-...+.|.+.++........+...-....+++.+ |.+.+| .+- +....|...++..
T Consensus 219 ~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l-~s~-s~D~~i~iwd~~~ 282 (325)
T d1pgua1 219 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF-ATV-GADATIRVWDVTT 282 (325)
T ss_dssp CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEE-EEE-ETTSEEEEEETTT
T ss_pred eeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEE-EEE-eCCCeEEEEECCC
Confidence 888887778899999987655544442222333444443 333344 443 2345677777664
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.26 E-value=0.1 Score=47.81 Aligned_cols=150 Identities=15% Similarity=0.142 Sum_probs=87.8
Q ss_pred EcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec---CC----CeEEEEeCC--CCeEEEEECCCC
Q psy13629 137 YYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW---LT----EKLYWTDSE--TNKLEVSSLDGK 207 (395)
Q Consensus 137 d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~---~~----~~LYwtd~~--~~~I~v~~ldg~ 207 (395)
++....|+-||... -|+.++++|. .. -.-...+++.+.+-. .. ..++.++.. ..+|.++.+++.
T Consensus 37 ~p~~SlI~gTdK~~-Gl~vYdL~G~---~l---~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~ 109 (353)
T d1h6la_ 37 NPQNSKLITTNKKS-GLAVYSLEGK---ML---HSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK 109 (353)
T ss_dssp CGGGCEEEEEETTS-CCEEEETTCC---EE---EECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETT
T ss_pred CcCccEEEEEcCcC-CEEEEcCCCc---EE---EecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCc
Confidence 44556777777544 4888999885 22 222345666666542 11 135666664 456766666543
Q ss_pred ceEE--E------EecCCCCceeEEE--eCCCCeEEEEeeCCCCeEEEEec--CCCCcceEEEEec--CCcCceeEEEec
Q psy13629 208 KRKV--L------YWEDIDQPRAIAL--VPQDSIMFWTDWGEVPKIERGAM--NGDPRHRKVIVDS--TIFWPNGIAIDF 273 (395)
Q Consensus 208 ~~~~--l------~~~~~~~P~~iav--dp~~g~LYwtd~~~~~~I~~~~~--dG~~~~~~~lv~~--~~~~P~glalD~ 273 (395)
.... + ....+..|+|+++ ++..|.+|..--.+..+++...+ ++...-...++.. .-..+-|+++|.
T Consensus 110 ~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDd 189 (353)
T d1h6la_ 110 NGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADD 189 (353)
T ss_dssp TTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEET
T ss_pred ccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeC
Confidence 3221 1 1134567999999 78888666444344556655544 4421212222221 234688999998
Q ss_pred cccEEEEeccceeeeeeeccc
Q psy13629 274 NNRLLYWIDGRLTFIEVMDYD 294 (395)
Q Consensus 274 ~~~rLYwaD~~~~~I~~~~~d 294 (395)
.+++||+++... .|++.+.+
T Consensus 190 e~~~LyisEE~~-Giw~~~a~ 209 (353)
T d1h6la_ 190 EYGSLYIAEEDE-AIWKFSAE 209 (353)
T ss_dssp TTTEEEEEETTT-EEEEEESS
T ss_pred CCCcEEEecCcc-ceEEEEec
Confidence 889999998764 56766654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.91 E-value=0.24 Score=42.60 Aligned_cols=122 Identities=6% Similarity=-0.026 Sum_probs=78.7
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe--CCCCCcceEEEecCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT--NGLITPDGLAIDWLT 186 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~--~~~~~p~glAVD~~~ 186 (395)
.|++.++........+......+.+++|++.++.|+... .++.|...+++.. ....... ........+++++.+
T Consensus 207 ~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s-~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~~s~~~ 282 (340)
T d1tbga_ 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECSSS
T ss_pred eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeeccc---ccccccccccccCceEEEEECCCC
Confidence 567777765232333344566788999999877665544 7888999988864 2222222 122346778888755
Q ss_pred CeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEE
Q psy13629 187 EKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWT 235 (395)
Q Consensus 187 ~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwt 235 (395)
+.| ++-...+.|.+.++........+........+|+++|...+|+-+
T Consensus 283 ~~l-~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~ 330 (340)
T d1tbga_ 283 RLL-LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp CEE-EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred CEE-EEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 555 455567889999987666555553334567889999877666543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.81 E-value=0.32 Score=43.48 Aligned_cols=146 Identities=11% Similarity=-0.004 Sum_probs=88.9
Q ss_pred CeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCCCce
Q psy13629 130 EGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDGKKR 209 (395)
Q Consensus 130 ~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg~~~ 209 (395)
.+..++|+++++.|..+ ..++.|..++.++.... ....+...-.....|++.+.++.|. +-...+.|.+.++++...
T Consensus 9 pIt~~~~s~dg~~la~~-~~~~~i~iw~~~~~~~~-~~~~l~gH~~~V~~l~fsp~~~~l~-s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAIC-PNNHEVHIYEKSGNKWV-QVHELKEHNGQVTGVDWAPDSNRIV-TCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CCCEEEECTTSSEEEEE-CSSSEEEEEEEETTEEE-EEEEEECCSSCEEEEEEETTTTEEE-EEETTSCEEEEEEETTEE
T ss_pred CeEEEEECCCCCEEEEE-eCCCEEEEEECCCCCEE-EEEEecCCCCCEEEEEECCCCCEEE-EEECCCeEEEEeeccccc
Confidence 36789999988777554 46788999998865211 1122233345678999998666554 445577899999887654
Q ss_pred EEEEe--cCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEe---cCCcCceeEEEeccccEEEEe
Q psy13629 210 KVLYW--EDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVD---STIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 210 ~~l~~--~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~---~~~~~P~glalD~~~~rLYwa 281 (395)
..... .....+..++++|....|+... + ...|...+++.. ........ .+......+++++++..|..+
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s-~-d~~i~i~~~~~~-~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 159 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGS-G-SRVISICYFEQE-NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEE-T-TSSEEEEEEETT-TTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccccccccccccccccceeec-c-cCcceeeeeecc-cccccccccccccccccccccccccccceecc
Confidence 43322 2345688999999888887765 3 344555555441 12212111 122345667777666655443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.39 E-value=0.61 Score=38.96 Aligned_cols=161 Identities=6% Similarity=0.013 Sum_probs=96.8
Q ss_pred ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 124 IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 124 ~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
+....+.+.+|+|++.++.|. +...++.|...+++... ....+.........++.++.+..+.... ....+...+
T Consensus 13 L~GH~~~I~~l~~sp~~~~l~-s~s~Dg~i~iWd~~~~~---~~~~~~~h~~~V~~~~~~~~~~~~~~~~-~~~~~~~~~ 87 (317)
T d1vyhc1 13 LSGHRSPVTRVIFHPVFSVMV-SASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDHSGKLLASCS-ADMTIKLWD 87 (317)
T ss_dssp EECCSSCEEEEEECSSSSEEE-EEESSSCEEEEETTTCC---CCEEECCCSSCEEEEEECTTSSEEEEEE-TTSCCCEEE
T ss_pred EcCCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCC---EEEEEeCCCCcEEEEeeecccccccccc-ccccccccc
Confidence 334556789999999877655 55578899999987652 2223333445678889887555555444 455566666
Q ss_pred CCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEecc
Q psy13629 204 LDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDG 283 (395)
Q Consensus 204 ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~ 283 (395)
...................+.+.+....+.... ....+...++.. ......+..+......++++..+..|..+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 162 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS--RDKTIKMWEVQT--GYCVKTFTGHREWVRMVRPNQDGTLIASCS- 162 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEE-
T ss_pred ccccccccccccccccceeeeccCCCceEEeec--cCcceeEeeccc--ceeeeEEccCCCcceeeecccCCCEEEEEe-
Confidence 655555444434456677888888777776544 245566666654 222223333444566777776665554443
Q ss_pred ceeeeeeeccc
Q psy13629 284 RLTFIEVMDYD 294 (395)
Q Consensus 284 ~~~~I~~~~~d 294 (395)
..+.|...+..
T Consensus 163 ~d~~v~~~~~~ 173 (317)
T d1vyhc1 163 NDQTVRVWVVA 173 (317)
T ss_dssp TTSCEEEEETT
T ss_pred CCCeEEEEeec
Confidence 33445444443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.38 E-value=0.84 Score=40.50 Aligned_cols=183 Identities=10% Similarity=0.049 Sum_probs=108.4
Q ss_pred EEEEeeCCCCCccE---EecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-CCCCcceEEEec
Q psy13629 109 DIRIANLSRPLKPV---TIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-GLITPDGLAIDW 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~---~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-~~~~p~glAVD~ 184 (395)
.|++.++.+ .+.. .+......+.+|+|++.++.|.-.. .++.|...++++.. ........ ....+..+++++
T Consensus 30 ~i~iw~~~~-~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s-~D~~i~vWd~~~~~--~~~~~~~~~~~~~v~~i~~~p 105 (371)
T d1k8kc_ 30 EVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRT--WKPTLVILRINRAARCVRWAP 105 (371)
T ss_dssp EEEEEEEET-TEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTE--EEEEEECCCCSSCEEEEEECT
T ss_pred EEEEEECCC-CCEEEEEEecCCCCCEEEEEECCCCCEEEEEE-CCCeEEEEeecccc--ccccccccccccccccccccc
Confidence 688888766 3322 2334566789999999888776544 67889999988652 22233333 335688899998
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEe---c-CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCc-------
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYW---E-DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPR------- 253 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~---~-~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~------- 253 (395)
.++.|+... ..+.|.+.+++......... . .......++++|.+.+|..... ...|...++.....
T Consensus 106 ~~~~l~~~s-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~--D~~v~v~~~~~~~~~~~~~~~ 182 (371)
T d1k8kc_ 106 NEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC--DFKCRIFSAYIKEVEERPAPT 182 (371)
T ss_dssp TSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET--TSCEEEEECCCTTTSCCCCCB
T ss_pred ccccceeec-ccCcceeeeeecccccccccccccccccccccccccccccceecccc--CcEEEEEeeccCccccccccc
Confidence 777666554 55777777766554332221 1 2345678999997766654432 23344444432100
Q ss_pred -------ceEEEE--ecCCcCceeEEEeccccEEEEeccceeeeeeeccccceee
Q psy13629 254 -------HRKVIV--DSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYVRL 299 (395)
Q Consensus 254 -------~~~~lv--~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~~~ 299 (395)
..+.+. ..+....+++++++++++|+.+. .++.|..-+.......
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~~~ 236 (371)
T d1k8kc_ 183 PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKMAV 236 (371)
T ss_dssp TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTEE
T ss_pred cccccccceeeeeeccCccCcEEEEEeecccccccccc-cCCcceEEeeecccce
Confidence 011111 22345678889998888777664 3466766666544433
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.22 E-value=0.69 Score=38.59 Aligned_cols=165 Identities=3% Similarity=-0.038 Sum_probs=96.8
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEec----
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDW---- 184 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~---- 184 (395)
.+++.++........+.........+++++.++.|.... .++.|...+..... ....+.........++..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~v~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~ 199 (317)
T d1vyhc1 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS-NDQTVRVWVVATKE---CKAELREHRHVVECISWAPESSY 199 (317)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCC---EEEEECCCSSCEEEEEECCSCGG
T ss_pred ceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEe-CCCeEEEEeeccce---eeEEEecCCCCceEEEEeecccc
Confidence 566777766344444455666788899998877666544 67788888776542 1222222112222222221
Q ss_pred ---------------CCCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecC
Q psy13629 185 ---------------LTEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMN 249 (395)
Q Consensus 185 ---------------~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~d 249 (395)
..+.+..+-...+.|...++........+........+++++|.+.+|+... ....|...++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~ 277 (317)
T d1vyhc1 200 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA--DDKTLRVWDYK 277 (317)
T ss_dssp GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE--TTTEEEEECCT
T ss_pred ceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE--CCCeEEEEECC
Confidence 2233444555667888888876665544434456678999999877776554 34678888876
Q ss_pred CCCcceEEEEecCCcCceeEEEeccccEEEEe
Q psy13629 250 GDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 250 G~~~~~~~lv~~~~~~P~glalD~~~~rLYwa 281 (395)
. ......+..+....+.+++.+.++.|+.+
T Consensus 278 ~--~~~~~~~~~h~~~V~~~~~s~~~~~l~s~ 307 (317)
T d1vyhc1 278 N--KRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307 (317)
T ss_dssp T--SCCCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred C--CcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 4 22222233344456778887666665544
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.06 E-value=0.74 Score=38.95 Aligned_cols=157 Identities=11% Similarity=0.074 Sum_probs=93.5
Q ss_pred cCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-CCCCcceEEEecCCCeEEEEeCCCCeEEEEE
Q psy13629 125 IKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-GLITPDGLAIDWLTEKLYWTDSETNKLEVSS 203 (395)
Q Consensus 125 ~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ 203 (395)
......+.+|+|++.++.|+ +...++.|...+++.. ........ ......++++.+. +.++.+. ..+.+.+.+
T Consensus 9 ~GH~~~V~~l~~s~dg~~l~-s~s~Dg~v~vWd~~~~---~~~~~~~~~h~~~v~~v~~~~~-g~~~~~~-~d~~v~~~~ 82 (299)
T d1nr0a2 9 YGHNKAITALSSSADGKTLF-SADAEGHINSWDISTG---ISNRVFPDVHATMITGIKTTSK-GDLFTVS-WDDHLKVVP 82 (299)
T ss_dssp CCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTC---CEEECSSCSCSSCEEEEEECTT-SCEEEEE-TTTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCEEE-EEcCCCeEEEEECCCC---cEEEEEcCCCCCcEEEEEeecc-ceeeccc-ceeeEEEec
Confidence 33456788999999877665 5457889999998764 22222222 2345678888774 4565544 467888888
Q ss_pred CCCCceE---EEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEE
Q psy13629 204 LDGKKRK---VLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYW 280 (395)
Q Consensus 204 ldg~~~~---~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYw 280 (395)
..+.... .........+.++++.+.+..+..+. . ..+...+.. ...+.... ..+..+++.+.++.|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~--~~i~~~~~~---~~~~~~~~---~~~~~~~~s~~~~~l~~ 153 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-Y--KHIAIYSHG---KLTEVPIS---YNSSCVALSNDKQFVAV 153 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-S--SEEEEEETT---EEEEEECS---SCEEEEEECTTSCEEEE
T ss_pred cCCccccccccccccccccccccccccccccccccc-c--ccccccccc---cccccccc---ccccccccccccccccc
Confidence 7764321 12223456788999999877776655 2 345444422 12222221 24566777766666665
Q ss_pred eccceeeeeeeccccce
Q psy13629 281 IDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 281 aD~~~~~I~~~~~dG~~ 297 (395)
.. ..+.|...++++..
T Consensus 154 g~-~dg~i~~~d~~~~~ 169 (299)
T d1nr0a2 154 GG-QDSKVHVYKLSGAS 169 (299)
T ss_dssp EE-TTSEEEEEEEETTE
T ss_pred cc-cccccccccccccc
Confidence 54 34566666665443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.83 E-value=0.96 Score=38.20 Aligned_cols=175 Identities=13% Similarity=0.020 Sum_probs=103.7
Q ss_pred EEEEeeCCCCCccEEecC-CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIK-DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~-~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~ 187 (395)
.|++.++........... ....+.+++|.+.+. ++.+. .++.|...+..+................+.++++.+.++
T Consensus 35 ~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 112 (299)
T d1nr0a2 35 HINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVS-WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 112 (299)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEE-TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred eEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eeccc-ceeeEEEeccCCccccccccccccccccccccccccccc
Confidence 577788766222222222 345678999998765 44444 577888888776532111222223345677888887666
Q ss_pred eEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCce
Q psy13629 188 KLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPN 267 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~ 267 (395)
.+..+.. +.+.+.+.. +.. .. .....+..++++|...+|+... ....|...++++. ...+.....+-....
T Consensus 113 ~~~~~~~--~~i~~~~~~-~~~-~~--~~~~~~~~~~~s~~~~~l~~g~--~dg~i~~~d~~~~-~~~~~~~~~~~~~i~ 183 (299)
T d1nr0a2 113 IAVAACY--KHIAIYSHG-KLT-EV--PISYNSSCVALSNDKQFVAVGG--QDSKVHVYKLSGA-SVSEVKTIVHPAEIT 183 (299)
T ss_dssp CEEEEES--SEEEEEETT-EEE-EE--ECSSCEEEEEECTTSCEEEEEE--TTSEEEEEEEETT-EEEEEEEEECSSCEE
T ss_pred ccccccc--ccccccccc-ccc-cc--cccccccccccccccccccccc--ccccccccccccc-ccccccccccccccc
Confidence 6665543 466666632 111 11 2345678899999877776654 3567888888762 222223333445678
Q ss_pred eEEEeccccEEEEeccceeeeeeecccc
Q psy13629 268 GIAIDFNNRLLYWIDGRLTFIEVMDYDG 295 (395)
Q Consensus 268 glalD~~~~rLYwaD~~~~~I~~~~~dG 295 (395)
.+++++.+..|+.++. .+.|...+...
T Consensus 184 ~~~~~~~~~~l~~~~~-d~~i~~~~~~~ 210 (299)
T d1nr0a2 184 SVAFSNNGAFLVATDQ-SRKVIPYSVAN 210 (299)
T ss_dssp EEEECTTSSEEEEEET-TSCEEEEEGGG
T ss_pred cccccccccccccccc-ccccccccccc
Confidence 8999987777776653 45566665543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.43 E-value=0.11 Score=48.59 Aligned_cols=97 Identities=9% Similarity=-0.008 Sum_probs=69.0
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceEEEEe-cCCCCceeEEEeCCCCeEEEEeeCCC------------------CeEEE
Q psy13629 185 LTEKLYWTDSETNKLEVSSLDGKKRKVLYW-EDIDQPRAIALVPQDSIMFWTDWGEV------------------PKIER 245 (395)
Q Consensus 185 ~~~~LYwtd~~~~~I~v~~ldg~~~~~l~~-~~~~~P~~iavdp~~g~LYwtd~~~~------------------~~I~~ 245 (395)
.++.||.+|..+++|.|.+++...+..++. .+...+.|+.+.+..+..|+..-++. ..+..
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 467999999999999999999988876554 46788999999777777777663321 11334
Q ss_pred EecCCCCcceEEEEecCCcCceeEEEeccccEEEEeccc
Q psy13629 246 GAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDGR 284 (395)
Q Consensus 246 ~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~~ 284 (395)
++.+......++.+.. .|.+++++++++.+|++.-+
T Consensus 178 ID~~tm~V~~QV~V~g---~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 178 VDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp EETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESC
T ss_pred EecCCceEEEEeeeCC---ChhccccCCCCCEEEEEecc
Confidence 4444322233444443 58899999999999998643
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.99 E-value=1.5 Score=37.05 Aligned_cols=146 Identities=5% Similarity=-0.088 Sum_probs=89.6
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLDG 206 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ldg 206 (395)
.........+.+. ..++.+...++.|..+++... .....+......+..+++++.++.| .+-...+.|.+.++..
T Consensus 183 ~~~~~~~~~~~~~-~~~~~~~~~d~~v~i~d~~~~---~~~~~~~~h~~~i~~v~~~p~~~~l-~s~s~d~~i~~~~~~~ 257 (340)
T d1tbga_ 183 HTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREG---MCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDLRA 257 (340)
T ss_dssp CSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTT
T ss_pred cceeEeeeccccc-cceeEEeecCceEEEEECCCC---cEEEEEeCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeecc
Confidence 3344455555544 445556667888988888764 2222333334567889998855444 5555678899999987
Q ss_pred CceEEEEec--CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEe
Q psy13629 207 KKRKVLYWE--DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWI 281 (395)
Q Consensus 207 ~~~~~l~~~--~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwa 281 (395)
......... .......++++|...+|+... ....|...++.. ......+..+....+.+++.+++..|+.+
T Consensus 258 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~--~dg~i~iwd~~~--~~~~~~~~~H~~~V~~l~~s~d~~~l~s~ 330 (340)
T d1tbga_ 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGY--DDFNCNVWDALK--ADRAGVLAGHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp TEEEEEECCTTCCSCEEEEEECSSSCEEEEEE--TTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred cccccccccccccCceEEEEECCCCCEEEEEE--CCCEEEEEECCC--CcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 766555432 234467899999877776554 245677777754 23333333344456778887666555443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.85 E-value=1.5 Score=36.64 Aligned_cols=117 Identities=10% Similarity=-0.100 Sum_probs=70.4
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe--CCCCCcceEEEecCCCeEEEEeCCCCeEEEEEC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT--NGLITPDGLAIDWLTEKLYWTDSETNKLEVSSL 204 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~--~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~l 204 (395)
....+.+|+|++.++.|..+. .+++|..++++... ....+.. ........+++.+..+.+.++-...+.|.+.++
T Consensus 10 h~d~I~~l~fsp~~~~L~s~s-~Dg~v~iwd~~~~~--~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~ 86 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLITS-WDGSLTVYKFDIQA--KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEE-TTSEEEEEEEETTT--TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred CCCCEEEEEEeCCCCEEEEEE-CCCeEEEEEccCCC--cceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence 345689999999988776554 78899999887542 2122221 223456788887767777777667788999998
Q ss_pred CCCceEEEEecCCCCcee-EEEeCCCCeEEEEeeCCCCeEEEEec
Q psy13629 205 DGKKRKVLYWEDIDQPRA-IALVPQDSIMFWTDWGEVPKIERGAM 248 (395)
Q Consensus 205 dg~~~~~l~~~~~~~P~~-iavdp~~g~LYwtd~~~~~~I~~~~~ 248 (395)
.................. ....+....+.... ....+...++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~wd~ 129 (342)
T d1yfqa_ 87 IGSPSFQALTNNEANLGICRICKYGDDKLIAAS--WDGLIEVIDP 129 (342)
T ss_dssp SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEE--TTSEEEEECH
T ss_pred ccccccccccccccccccccccccccccccccc--cccccceeec
Confidence 877666555333333322 33333333433322 2344554444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=1.9 Score=37.32 Aligned_cols=120 Identities=10% Similarity=0.006 Sum_probs=79.3
Q ss_pred CCCCeEEEEEEcCCCEEEEEECC-CCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCCCCeEEEEECC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHG-TEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSETNKLEVSSLD 205 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~-~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~~~~I~v~~ld 205 (395)
.......++|++.+..|...... .+.+.....+.. .....+...-....++++.+.+..+..+-..++.|...++.
T Consensus 114 ~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~ 190 (325)
T d1pgua1 114 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190 (325)
T ss_dssp CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred ccCcEEEEEECCCCCccceeeccccceEEEEeeccc---ccceeeeecccccccccccccccceEEEeeccccccccccc
Confidence 44567889999998888776543 456777777753 22222333345567899988777777777778889888876
Q ss_pred CCceEEEEec---CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 206 GKKRKVLYWE---DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 206 g~~~~~l~~~---~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
.......... .......++++|+.+.++.+- +....|...++.-
T Consensus 191 ~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~-~~d~~i~iwd~~~ 237 (325)
T d1pgua1 191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV-GSDRKISCFDGKS 237 (325)
T ss_dssp TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE-ETTCCEEEEETTT
T ss_pred ccccceecccccCCCCccEEeeeccccceecccc-ccccceeeeeecc
Confidence 5444333322 134468899999888877765 3355677777653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.35 E-value=2.3 Score=37.02 Aligned_cols=158 Identities=7% Similarity=-0.005 Sum_probs=91.1
Q ss_pred CCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEe-----------------CCCCCcceEEEecCCCe
Q psy13629 126 KDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVIT-----------------NGLITPDGLAIDWLTEK 188 (395)
Q Consensus 126 ~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~-----------------~~~~~p~glAVD~~~~~ 188 (395)
.....+.+++|+++++.|. +. .++.|...++.... ....+.. ..-....+|++.+.+..
T Consensus 60 ~H~~~V~~l~fs~dg~~la-sg-~d~~i~iW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~ 135 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLA-TG-CNKTTQVYRVSDGS--LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135 (388)
T ss_dssp ECSSCCCEEEECTTSSEEE-EE-CBSCEEEEETTTCC--EEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred CCCCcEEEEEECCCCCEEE-EE-eCCeEEEEEecccc--eEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence 3556789999999877654 44 47788888876542 1111110 01123567888875444
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcceEEEEecCCcCcee
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRHRKVIVDSTIFWPNG 268 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~~~~~P~g 268 (395)
| ++-...+.|.+.+...................++..+....++.+. . ...|...++.. ..... ..........
T Consensus 136 l-~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~-~~~i~~~d~~~--~~~~~-~~~~~~~~~~ 209 (388)
T d1erja_ 136 L-ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS-G-DRTVRIWDLRT--GQCSL-TLSIEDGVTT 209 (388)
T ss_dssp E-EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-T-TSEEEEEETTT--TEEEE-EEECSSCEEE
T ss_pred c-eecccccccccccccccccccccccccccccccccccccccccccc-c-ceeeeeeeccc--ccccc-cccccccccc
Confidence 4 4555678899999887766655544456678899998877777665 2 45566667665 22222 2222223344
Q ss_pred EEEeccccEEEEeccceeeeeeecc
Q psy13629 269 IAIDFNNRLLYWIDGRLTFIEVMDY 293 (395)
Q Consensus 269 lalD~~~~rLYwaD~~~~~I~~~~~ 293 (395)
+.+...++++..+-...+.|...+.
T Consensus 210 ~~~~~~~~~~l~~~~~d~~i~i~~~ 234 (388)
T d1erja_ 210 VAVSPGDGKYIAAGSLDRAVRVWDS 234 (388)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEET
T ss_pred ccccCCCCCeEEEEcCCCeEEEeec
Confidence 4444444444444333445544444
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.92 E-value=2.6 Score=36.57 Aligned_cols=181 Identities=8% Similarity=-0.050 Sum_probs=106.9
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|++.+................+.++++.+.+..++.+. ..+.|...+.... ..............+++.+..++
T Consensus 144 ~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 218 (388)
T d1erja_ 144 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTG----QCSLTLSIEDGVTTVAVSPGDGK 218 (388)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTT----EEEEEEECSSCEEEEEECSTTCC
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cceeeeeeecccc----ccccccccccccccccccCCCCC
Confidence 567777765333334444566788999999888887766 6778888888764 22223333445566667666777
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEec-------CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCCCCcc-------
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWE-------DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNGDPRH------- 254 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~-------~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG~~~~------- 254 (395)
+..+-...+.|.+.+.........+.. .......++++|...+|+... ....|...++......
T Consensus 219 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~ 296 (388)
T d1erja_ 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS--LDRSVKLWNLQNANNKSDSKTPN 296 (388)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEEC-------------
T ss_pred eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE--CCCcEEEEeccCCcccccccccc
Confidence 777766778899998876554433321 123467899999777766543 2345666665431000
Q ss_pred ---eEEEEecCCcCceeEEEeccccEEEEeccceeeeeeeccccce
Q psy13629 255 ---RKVIVDSTIFWPNGIAIDFNNRLLYWIDGRLTFIEVMDYDGYV 297 (395)
Q Consensus 255 ---~~~lv~~~~~~P~glalD~~~~rLYwaD~~~~~I~~~~~dG~~ 297 (395)
.......+-.....+++++.+..|+.+. .++.|...++....
T Consensus 297 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~ 341 (388)
T d1erja_ 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFWDKKSGN 341 (388)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEEEETTTCC
T ss_pred ccceeeecccccceEEEEEECCCCCEEEEEe-CCCEEEEEECCCCc
Confidence 0111112233456788887766666554 34566666654333
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.88 E-value=0.45 Score=40.00 Aligned_cols=110 Identities=10% Similarity=0.070 Sum_probs=72.6
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCC----CCeEEEEecCCCCcceEEEEec
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGE----VPKIERGAMNGDPRHRKVIVDS 261 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~----~~~I~~~~~dG~~~~~~~lv~~ 261 (395)
+++|.|+.. +.|++.+++|...+.|. .......+.+++|++++|.++.+.. ...|+..+.+| ...+.+...
T Consensus 12 G~~v~f~~~--~dl~~~d~~~g~~~~Lt-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~--g~~~~lt~~ 86 (281)
T d1k32a2 12 GDRIIFVCC--DDLWEHDLKSGSTRKIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN--GEIKRITYF 86 (281)
T ss_dssp TTEEEEEET--TEEEEEETTTCCEEEEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT--TEEEECCCC
T ss_pred CCEEEEEeC--CcEEEEECCCCCEEEEe-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC--CceEEeeec
Confidence 677777754 57999999998887775 5555678889999999998876531 24688999888 444444322
Q ss_pred C------CcCceeEEEeccccEEEEeccce-----eeeeeeccccceeee
Q psy13629 262 T------IFWPNGIAIDFNNRLLYWIDGRL-----TFIEVMDYDGYVRLV 300 (395)
Q Consensus 262 ~------~~~P~glalD~~~~rLYwaD~~~-----~~I~~~~~dG~~~~~ 300 (395)
. .......+...+++.|+++.... ..+..++.++.....
T Consensus 87 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (281)
T d1k32a2 87 SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP 136 (281)
T ss_dssp CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE
T ss_pred CCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE
Confidence 1 12345566777788888875432 234555566554433
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.58 E-value=4.7 Score=33.13 Aligned_cols=151 Identities=11% Similarity=-0.022 Sum_probs=84.5
Q ss_pred CEEEEEECCCC----eEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCC--CCeEEEEECCCCceEEEEe
Q psy13629 141 SMVCWTDHGTE----MISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE--TNKLEVSSLDGKKRKVLYW 214 (395)
Q Consensus 141 ~~lywsd~~~~----~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~--~~~I~v~~ldg~~~~~l~~ 214 (395)
+..|.++...+ .|+.++.||+ +...+... ......-+..+.++.|.|+... ...+.+.+.++...+.+.
T Consensus 5 ~iay~~~~~~~~~~~~l~i~d~dG~---~~~~l~~~-~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~- 79 (269)
T d2hqsa1 5 RIAYVVQTNGGQFPYELRVSDYDGY---NQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA- 79 (269)
T ss_dssp EEEEEEECSSSSCCEEEEEEETTSC---SCEEEEEE-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-
T ss_pred eEEEEEEeCCCCceEEEEEEcCCCC---CcEEEecC-CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe-
Confidence 44455554322 5888889987 34444432 3334456788889999776533 447888999988887776
Q ss_pred cCCCCceeEEEeCCCCeEEEEeeC-CCCeEEEEecCCCCcceEEEEecCCcCceeEEEeccccEEEEecc--ceeeeeee
Q psy13629 215 EDIDQPRAIALVPQDSIMFWTDWG-EVPKIERGAMNGDPRHRKVIVDSTIFWPNGIAIDFNNRLLYWIDG--RLTFIEVM 291 (395)
Q Consensus 215 ~~~~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~dG~~~~~~~lv~~~~~~P~glalD~~~~rLYwaD~--~~~~I~~~ 291 (395)
...........+|....+.+.-.. ....+....... ......................+.++++.. ....|...
T Consensus 80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 156 (269)
T d2hqsa1 80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 156 (269)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eeecccccceecCCCCeeeEeeecCCccceeeccccc---ccceeeeeccccccccccccccccceecccccCCceEeee
Confidence 566777888899988877765533 223333322222 122222222122222233344555555532 23456666
Q ss_pred ccccceee
Q psy13629 292 DYDGYVRL 299 (395)
Q Consensus 292 ~~dG~~~~ 299 (395)
++++....
T Consensus 157 ~~~~~~~~ 164 (269)
T d2hqsa1 157 NINGGAPQ 164 (269)
T ss_dssp ETTSSCCE
T ss_pred ecccccce
Confidence 66665443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.00 E-value=4.7 Score=33.28 Aligned_cols=102 Identities=10% Similarity=-0.055 Sum_probs=60.4
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEE-EeCCCCCcceEEEecC---------CCeEEEEeCCC
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNV-ITNGLITPDGLAIDWL---------TEKLYWTDSET 196 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i-~~~~~~~p~glAVD~~---------~~~LYwtd~~~ 196 (395)
....+..++|++.+..|...+ .++.|..+++... ..... ..........+++.+. .+.+..+-...
T Consensus 161 ~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~---~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D 236 (287)
T d1pgua2 161 LRAKPSYISISPSETYIAAGD-VMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 236 (287)
T ss_dssp CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred cCCceeEEEeccCcccccccc-ccccccceeeccc---ccccccccccccccceeeecccccccccccCCCCeeEeecCC
Confidence 345678999999988877666 7788988888754 11111 1111234556665543 33455566667
Q ss_pred CeEEEEECCCCc-eEEEEecCCCCceeEEEeCCCCeEE
Q psy13629 197 NKLEVSSLDGKK-RKVLYWEDIDQPRAIALVPQDSIMF 233 (395)
Q Consensus 197 ~~I~v~~ldg~~-~~~l~~~~~~~P~~iavdp~~g~LY 233 (395)
+.|.+.++.... .............+++..|. +.|+
T Consensus 237 ~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~-~~l~ 273 (287)
T d1pgua2 237 TNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLV 273 (287)
T ss_dssp SCEEEEESSCTTCCEEETTSSTTCEEEEEEEET-TEEE
T ss_pred CeEEEEECCCCCeEEEEeCCCCCCeEEEEECCC-CEEE
Confidence 788888875433 22222223455677877764 4443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.41 E-value=12 Score=34.26 Aligned_cols=103 Identities=11% Similarity=0.052 Sum_probs=58.1
Q ss_pred eEEEEECCCCceEEEEecC----CC-CceeEEEeCCCCeEEEE---eeCCCCeEEEEecCCCC-----cceEEEEecCCc
Q psy13629 198 KLEVSSLDGKKRKVLYWED----ID-QPRAIALVPQDSIMFWT---DWGEVPKIERGAMNGDP-----RHRKVIVDSTIF 264 (395)
Q Consensus 198 ~I~v~~ldg~~~~~l~~~~----~~-~P~~iavdp~~g~LYwt---d~~~~~~I~~~~~dG~~-----~~~~~lv~~~~~ 264 (395)
.|..++..+..++++..+. +. ......+.++++.++|. +-++...++.+.+.+.. ...+.+......
T Consensus 281 ~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~ 360 (465)
T d1xfda1 281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWD 360 (465)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC
T ss_pred eEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCce
Confidence 5788888877777666432 11 12346788877765543 32334556666543210 111222222110
Q ss_pred CceeEEEeccccEEEEec----cceeeeeeeccccceeee
Q psy13629 265 WPNGIAIDFNNRLLYWID----GRLTFIEVMDYDGYVRLV 300 (395)
Q Consensus 265 ~P~glalD~~~~rLYwaD----~~~~~I~~~~~dG~~~~~ 300 (395)
--.-+++|..++.||++- .....+++++++|.....
T Consensus 361 V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~ 400 (465)
T d1xfda1 361 VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ 400 (465)
T ss_dssp EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB
T ss_pred EEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcce
Confidence 012257898899999974 234568999999876544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.34 E-value=7.8 Score=31.98 Aligned_cols=134 Identities=7% Similarity=-0.007 Sum_probs=74.4
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-CCCCcceEEEecCCC
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-GLITPDGLAIDWLTE 187 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-~~~~p~glAVD~~~~ 187 (395)
.|++.++.................+++++. +. +++...++.|..++..... ....+.. ......-.++.+. +
T Consensus 198 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~-l~s~s~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~-~ 270 (342)
T d2ovrb2 198 SIRVWDVETGNCIHTLTGHQSLTSGMELKD--NI-LVSGNADSTVKIWDIKTGQ---CLQTLQGPNKHQSAVTCLQFN-K 270 (342)
T ss_dssp CEEEEETTTCCEEEEECCCCSCEEEEEEET--TE-EEEEETTSCEEEEETTTCC---EEEEECSTTSCSSCEEEEEEC-S
T ss_pred eEEEeecccceeeeEecccccceeEEecCC--CE-EEEEcCCCEEEEEeccccc---ccccccccceeeeceeecccC-C
Confidence 577777766333344444455666777763 44 4555578899999988652 2222222 2222333445543 4
Q ss_pred eEEEEeCCCCeEEEEECCCC-ceEEEEecC----CCCceeEEEeCCCCeEEEEeeC--CCCeEEEEecC
Q psy13629 188 KLYWTDSETNKLEVSSLDGK-KRKVLYWED----IDQPRAIALVPQDSIMFWTDWG--EVPKIERGAMN 249 (395)
Q Consensus 188 ~LYwtd~~~~~I~v~~ldg~-~~~~l~~~~----~~~P~~iavdp~~g~LYwtd~~--~~~~I~~~~~d 249 (395)
+++.+-...+.|.+.++... ....+.... ......++++|.+..|...... ...+|...++|
T Consensus 271 ~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 45556667899999998754 434443211 2336778888754333332211 13456666665
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.58 E-value=5.6 Score=36.00 Aligned_cols=108 Identities=7% Similarity=-0.017 Sum_probs=70.3
Q ss_pred EEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC-C----CCCcceEEEecCCCeEEEEe--------CCCCeE
Q psy13629 133 AIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN-G----LITPDGLAIDWLTEKLYWTD--------SETNKL 199 (395)
Q Consensus 133 gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~-~----~~~p~glAVD~~~~~LYwtd--------~~~~~I 199 (395)
.+.|.+.+..+| . ..+.|..++..+. ....++.. . .....++++.+.++.|.++- ...+.+
T Consensus 21 ~~~W~~d~~~~~-~--~~~~~~~~~~~t~---~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~ 94 (470)
T d2bgra1 21 SLRWISDHEYLY-K--QENNILVFNAEYG---NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (470)
T ss_dssp CCEECSSSEEEE-E--SSSCEEEEETTTC---CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred CCEeCCCCEEEE-E--cCCcEEEEECCCC---CEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence 344555554444 2 3456888888765 33333332 1 24567899999888877653 223578
Q ss_pred EEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 200 EVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 200 ~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
.++++.++....+. ..-.......++|++.+|.+.. ...++..+.++
T Consensus 95 ~l~d~~~~~~~~l~-~~~~~~~~~~~SPDG~~ia~~~---~~~l~~~~~~~ 141 (470)
T d2bgra1 95 DIYDLNKRQLITEE-RIPNNTQWVTWSPVGHKLAYVW---NNDIYVKIEPN 141 (470)
T ss_dssp EEEETTTTEECCSS-CCCTTEEEEEECSSTTCEEEEE---TTEEEEESSTT
T ss_pred EEEECCCCcccccc-cCCccccccccccCcceeeEee---cccceEEECCC
Confidence 88999987655433 3345567788999999888865 45688888876
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.54 E-value=9.3 Score=31.29 Aligned_cols=137 Identities=7% Similarity=-0.048 Sum_probs=74.4
Q ss_pred EEEEeeCCCCCc-cEE--ecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecC
Q psy13629 109 DIRIANLSRPLK-PVT--IIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWL 185 (395)
Q Consensus 109 ~I~~~~l~~~~~-~~~--~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~ 185 (395)
.|++.+++.... ... .......+..++|.+.++.+..+...++.|...++.... ....................
T Consensus 34 ~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~---~~~~~~~~~~~~~~~~~~~~ 110 (342)
T d1yfqa_ 34 SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP---SFQALTNNEANLGICRICKY 110 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---SEEECBSCCCCSCEEEEEEE
T ss_pred eEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc---cccccccccccccccccccc
Confidence 678887765322 222 223556788999998888877787788899988887652 22222222223333333333
Q ss_pred CCeEEEEeCCCCeEEEEECCCCceE-EEEe-c----CCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 186 TEKLYWTDSETNKLEVSSLDGKKRK-VLYW-E----DIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 186 ~~~LYwtd~~~~~I~v~~ldg~~~~-~l~~-~----~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
+.....+....+.+.+.++...... .... . .........+.+....+.... . ...|...++..
T Consensus 111 ~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-d~~i~~~~~~~ 179 (342)
T d1yfqa_ 111 GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM-N-NSQVQWFRLPL 179 (342)
T ss_dssp TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEE-S-TTEEEEEESSC
T ss_pred ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeec-C-CCcEEEEeccc
Confidence 4445555556677777765432111 1111 1 122334455666565555544 2 35566666654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.73 E-value=11 Score=31.28 Aligned_cols=131 Identities=6% Similarity=-0.005 Sum_probs=79.5
Q ss_pred EEEEeeCCCCCccEEecCCCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCe
Q psy13629 109 DIRIANLSRPLKPVTIIKDLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEK 188 (395)
Q Consensus 109 ~I~~~~l~~~~~~~~~~~~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~ 188 (395)
.|+..++..................+.+++.++.++... .++.|...+.... ...............++.+ .+
T Consensus 182 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~~--~~- 254 (355)
T d1nexb2 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENG---ELMYTLQGHTALVGLLRLS--DK- 254 (355)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTC---CEEEEECCCSSCCCEEEEC--SS-
T ss_pred eeeeeecccccceeeeeccccccccccccccceeeeccc-ccceEEeeecccc---ccccccccccccccccccc--cc-
Confidence 455666655333334444667788899999888777655 6788888888764 2233333333456677765 34
Q ss_pred EEEEeCCCCeEEEEECCCCceEEEEecCCCCceeEEEeCCCCeEEEEeeCCCCeEEEEecCC
Q psy13629 189 LYWTDSETNKLEVSSLDGKKRKVLYWEDIDQPRAIALVPQDSIMFWTDWGEVPKIERGAMNG 250 (395)
Q Consensus 189 LYwtd~~~~~I~v~~ldg~~~~~l~~~~~~~P~~iavdp~~g~LYwtd~~~~~~I~~~~~dG 250 (395)
..++-...+.|.+.+++...+.... .......++..+.++.+..+- . ...|...++..
T Consensus 255 ~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g-~-d~~i~vwd~~t 312 (355)
T d1nexb2 255 FLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSG-S-ENQFNIYNLRS 312 (355)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEE--ECTTCCCCCEEEECSSEEEEE-E-TTEEEEEETTT
T ss_pred eeeeeecccccccccccccceeccc--ccCCceEEEEEcCCCCEEEEE-e-CCEEEEEECCC
Confidence 4456667889999999876554333 223344454444455555554 2 45677777753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.55 E-value=18 Score=33.03 Aligned_cols=141 Identities=6% Similarity=0.126 Sum_probs=71.8
Q ss_pred EEEEEEcCCCEEE--EEECCCC--eEEEEEccCCCCCceEEEEeCC----CC-CcceEEEecCCCeEEEEe----CCCCe
Q psy13629 132 AAIDYYYKKSMVC--WTDHGTE--MISCCTFDGNNVGSKHNVITNG----LI-TPDGLAIDWLTEKLYWTD----SETNK 198 (395)
Q Consensus 132 ~gl~~d~~~~~ly--wsd~~~~--~I~~~~~dg~~~~~~~~i~~~~----~~-~p~glAVD~~~~~LYwtd----~~~~~ 198 (395)
..+.|.+.+ +++ |.+...+ .|..++.... ....+.... +. ......+.+.++.++|.. .+.+.
T Consensus 258 ~~~~W~~d~-~~~~~~~nR~q~~~~i~~~d~~tg---~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ 333 (465)
T d1xfda1 258 TMVKWATST-KVAVTWLNRAQNVSILTLCDATTG---VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (465)
T ss_dssp EEEEESSSS-EEEEEEEETTSCEEEEEEEETTTC---CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred eeeEEcCCC-eEEEEEEccccccceEEEEcCCCC---cEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCc
Confidence 345665554 344 3343333 4555666544 233333221 11 123355666677665532 23455
Q ss_pred EEEEEC-------CCCceEEEEecCCCCcee-EEEeCCCCeEEEEeeCC---CCeEEEEecCCCCcceEEEEecCCc---
Q psy13629 199 LEVSSL-------DGKKRKVLYWEDIDQPRA-IALVPQDSIMFWTDWGE---VPKIERGAMNGDPRHRKVIVDSTIF--- 264 (395)
Q Consensus 199 I~v~~l-------dg~~~~~l~~~~~~~P~~-iavdp~~g~LYwtd~~~---~~~I~~~~~dG~~~~~~~lv~~~~~--- 264 (395)
++.+.+ +|+..+.|..... .... +++|+.++.+|++-..+ ...+++++++| ...+.++...+.
T Consensus 334 ly~~~~~~~~~~~~~~~~~~LT~G~w-~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g--~~~~~~lt~~~~~~~ 410 (465)
T d1xfda1 334 FYHITVSSSQPNSSNDNIQSITSGDW-DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG--NFNRQCLSCDLVENC 410 (465)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCSSS-CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST--TCCCBCSSTTSSSSC
T ss_pred eEEEEeccccccCCCceeEEeccCCc-eEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCC--CCcceeeccccCCCC
Confidence 666543 3333333332222 2233 47999999999987543 34699999999 443333332211
Q ss_pred CceeEEEeccccEEE
Q psy13629 265 WPNGIAIDFNNRLLY 279 (395)
Q Consensus 265 ~P~glalD~~~~rLY 279 (395)
.=+...++++++.+.
T Consensus 411 ~~~~~~~S~~~~y~v 425 (465)
T d1xfda1 411 TYFSASFSHSMDFFL 425 (465)
T ss_dssp CCCEEEECTTSSEEE
T ss_pred CEEEEEECCCCCEEE
Confidence 124567776666443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.03 E-value=11 Score=33.72 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=59.4
Q ss_pred EEEEEECCC--CeEEEEEccCCCCCceEEEEeCCCCCcceEEEecCCCeEEEEeCC------CCeEEEEECCCCceEEEE
Q psy13629 142 MVCWTDHGT--EMISCCTFDGNNVGSKHNVITNGLITPDGLAIDWLTEKLYWTDSE------TNKLEVSSLDGKKRKVLY 213 (395)
Q Consensus 142 ~lywsd~~~--~~I~~~~~dg~~~~~~~~i~~~~~~~p~glAVD~~~~~LYwtd~~------~~~I~v~~ldg~~~~~l~ 213 (395)
.++|.-..+ ..|+.++.+|. ... .+..+-....++ +.+.++.||++-.. ...|++++++|.....++
T Consensus 333 ~~~~~s~~dg~~~ly~~~~~g~---~~~-~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~l 407 (470)
T d2bgra1 333 FYKIISNEEGYRHICYFQIDKK---DCT-FITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCL 407 (470)
T ss_dssp EEEEEECTTSCEEEEEEETTCS---CCE-ESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEES
T ss_pred cEEEEeccCcCceeEEEeccCC---cee-eeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEe
Confidence 344543333 46888888875 222 233333334444 44457889987532 235999999998776666
Q ss_pred ecCC----CCceeEEEeCCCCeEEEEeeC-CCCeEEEEec
Q psy13629 214 WEDI----DQPRAIALVPQDSIMFWTDWG-EVPKIERGAM 248 (395)
Q Consensus 214 ~~~~----~~P~~iavdp~~g~LYwtd~~-~~~~I~~~~~ 248 (395)
...+ ..-+.++++|+.+++.-+..+ ..+.+...+.
T Consensus 408 t~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~ 447 (470)
T d2bgra1 408 SCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSS 447 (470)
T ss_dssp STTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEET
T ss_pred cccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEEC
Confidence 4322 223578999988876655534 2344444443
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=80.78 E-value=13 Score=33.04 Aligned_cols=157 Identities=10% Similarity=-0.004 Sum_probs=82.9
Q ss_pred CCCCeEEEEEEcCCCEEEEEECCCCeEEEEEccCCCCCceEEEEeC------CCCCcceEEEecCC-CeEEEEeCC----
Q psy13629 127 DLEEGAAIDYYYKKSMVCWTDHGTEMISCCTFDGNNVGSKHNVITN------GLITPDGLAIDWLT-EKLYWTDSE---- 195 (395)
Q Consensus 127 ~~~~~~gl~~d~~~~~lywsd~~~~~I~~~~~dg~~~~~~~~i~~~------~~~~p~glAVD~~~-~~LYwtd~~---- 195 (395)
..+...+|++||.+..+.++....+-|+|..=.|. ..+.+... ......+||||+.+ +.||+....
T Consensus 10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~---tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~ 86 (427)
T d2ebsa1 10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTS---KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD 86 (427)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTT---EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred CCCcEEEEEECCCCCCEEEEEecCCCEEEEECCCC---ceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCC
Confidence 35677899999886444444334556776553333 33332211 12345689999876 466665422
Q ss_pred -CCeEEEEECCCCceEEEEecC--------CCCceeEEEeCCC-CeEEEEeeCCCCeEEEEecCCCCcceEEEEec--C-
Q psy13629 196 -TNKLEVSSLDGKKRKVLYWED--------IDQPRAIALVPQD-SIMFWTDWGEVPKIERGAMNGDPRHRKVIVDS--T- 262 (395)
Q Consensus 196 -~~~I~v~~ldg~~~~~l~~~~--------~~~P~~iavdp~~-g~LYwtd~~~~~~I~~~~~dG~~~~~~~lv~~--~- 262 (395)
...|.+..=.|+.-+.+-... ......|+++|.+ ..||... . ...|++..=.| ..=+.+... .
T Consensus 87 ~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~-~-~~gl~~S~D~G--~tW~~~~~~~~~~ 162 (427)
T d2ebsa1 87 EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT-R-TEGIWKSSDRA--KTWTNVTSIPDAF 162 (427)
T ss_dssp SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC-S-SSCEEEESSTT--SSCEECTTSSCCC
T ss_pred cCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc-c-ccceeeecCCC--ceeeecccCcccc
Confidence 245776665565544443211 1234569999975 4566653 1 34477655444 222211111 1
Q ss_pred --CcCceeEEEecc-ccEEEEeccceeeeee
Q psy13629 263 --IFWPNGIAIDFN-NRLLYWIDGRLTFIEV 290 (395)
Q Consensus 263 --~~~P~glalD~~-~~rLYwaD~~~~~I~~ 290 (395)
......+++|+. .+.||.+......|++
T Consensus 163 ~~~~~~~~i~~~p~~~~~~y~~~~~~~giy~ 193 (427)
T d2ebsa1 163 TNGIGYTSVIFDPERNGTIYASATAPQGMYV 193 (427)
T ss_dssp CSSSCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred cCCccceEEEecccccceeeeeeeeccccee
Confidence 112345777754 4578876554455654
|