Psyllid ID: psy13659

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
Protein Sequence
MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMILLLINKKHWASHGSDAAKDSIEVSVQPSIDSLITPPNPATLGLKLGPVIETS
Secondary Structure (PSIPRED)
ccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccHHHHcccccccccHHHHHHHHHHHHccccHHHHHHcccHHHHccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcHHcccccHEEHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccHcHccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
magyamapapfewsSFLICSLGTGLVSSAANAVnqyhevpfdsqmsrtknrvlvrgvlspLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTsvytpmkriSIANTwvgsvvgaipplmgwAACTgslldgsggAFLLSAILFTWqfphfnalswnlrpdysragyrmmavtnpdlcrltslRYTVALLVVSaagplldvTNVWFALesiplnayFTYLAYKFykesdssssrkLFRFSLLHLPALMILLLINKkhwashgsdaakdsievsvqpsidslitppnpatlglklgpviets
Flexible Loop (DISEMBL)
MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEvpfdsqmsrtKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMILLLINKKHWASHGSDAAKDSIEVSVQPSIdslitppnpatlglklgpviets
Low Complexity Region (SEG)
MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHalgfalassaagtaMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAykfykesdssssrklfrfsllhlpalmilllINKKHWASHGSDAAKDSIEVSVQPSIDSLITPPNPATLGLKLGPVIETS
Disordered region (IsUnstruct)
*******PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKE******RKLFRFSLLHLPALMILLLINKKHWAS*****************************************
Disordered Region (DISOPRED)
MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMILLLINKKHWASHG********************************GP*****
Disordered Region (DISEMBL)
MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMILLLINKKHWASHGSDAAKDSIEVSVQPSIDSLITPPNPATLGLKLGPVIETS
Disordered Region (DISPRO)
MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMILLLINKKHWASHGSDAAKDSIEVSVQPSIDSLITPPNPATLGLKLGPVIET*
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLHLPALMILLLINKKHWASHGSDAAKDSIEVSVQPSIDSLITPPNPATLGLKLGPVIETS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	306	2.2.26 [Sep-21-2011]
Q8CFY5	443	Protoheme IX farnesyltran	yes	N/A	0.777	0.537	0.609	1e-83
Q12887	443	Protoheme IX farnesyltran	yes	N/A	0.777	0.537	0.626	1e-81
Q5R460	443	Protoheme IX farnesyltran	yes	N/A	0.777	0.537	0.622	8e-81
Q6C0L2	471	Protoheme IX farnesyltran	yes	N/A	0.846	0.549	0.44	3e-58
Q4I5G1	507	Protoheme IX farnesyltran	yes	N/A	0.852	0.514	0.406	3e-52
Q9Y7Y4	387	Protoheme IX farnesyltran	yes	N/A	0.787	0.622	0.456	4e-52
Q6BKW6	462	Protoheme IX farnesyltran	yes	N/A	0.843	0.558	0.418	5e-52
Q7S5E7	535	Protoheme IX farnesyltran	N/A	N/A	0.852	0.487	0.422	2e-51
Q6CTW6	452	Protoheme IX farnesyltran	yes	N/A	0.843	0.570	0.404	3e-51
Q6FUG4	451	Protoheme IX farnesyltran	yes	N/A	0.879	0.596	0.388	7e-51

>sp|Q8CFY5|COX10_MOUSE Protoheme IX farnesyltransferase, mitochondrial OS=Mus musculus GN=Cox10 PE=2 SV=1

 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 147/241 (60%), Positives = 185/241 (76%), Gaps = 3/241 (1%)

Query: 2   AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
           AG+A+AP PF+WS FL+ SLGTGL S AAN++NQ+ EVPFDS M+RTKNR LVRG +SPL
Sbjct: 174 AGFALAPGPFDWSCFLLTSLGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPL 233

Query: 62  HALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
            A+ FA   +  G A+L +GVN LT ALG+FN+ LYT  YTP+KR+SI NTWVG+VVGAI
Sbjct: 234 LAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPLKRVSITNTWVGAVVGAI 293

Query: 122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
           PP+MGW A TGSL     GA LL  IL++WQFPHFNALSW LR DYSR GY MM+VT+P 
Sbjct: 294 PPVMGWTAATGSL---DAGALLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPA 350

Query: 182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKL 241
           LCR  +LR+ +AL+ +S A P+LD+T   F + S+P+N Y +YL ++FY ++D  SSRKL
Sbjct: 351 LCRRVALRHCLALIALSTAAPVLDITTWVFPVISLPINLYISYLGFRFYVDADRRSSRKL 410

Query: 242 F 242
           F
Sbjct: 411 F 411

Converts protoheme IX and farnesyl diphosphate to heme O.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: -

>sp|Q12887|COX10_HUMAN Protoheme IX farnesyltransferase, mitochondrial OS=Homo sapiens GN=COX10 PE=1 SV=3

 Score =  303 bits (776), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/241 (62%), Positives = 188/241 (78%), Gaps = 3/241 (1%)

Query: 2   AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
           AG+A+AP PF+W  FL+ S+GTGL S AAN++NQ+ EVPFDS M+RTKNR LVRG +SPL
Sbjct: 175 AGFALAPGPFDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPL 234

Query: 62  HALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
            A+ FA   +  G A+L  GVN LT ALGLFN+ LYT  YTP+KRISIANTWVG+VVGAI
Sbjct: 235 LAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAI 294

Query: 122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
           PP+MGW A TGSL     GAFLL  IL++WQFPHFNALSW LR DYSR GY MM+VT+P 
Sbjct: 295 PPVMGWTAATGSL---DAGAFLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPG 351

Query: 182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKL 241
           LCR  +LR+ +ALLV+SAA P+LD+T   F + ++P+NAY +YL ++FY ++D  SSR+L
Sbjct: 352 LCRRVALRHCLALLVLSAAAPVLDITTWTFPIMALPINAYISYLGFRFYVDADRRSSRRL 411

Query: 242 F 242
           F
Sbjct: 412 F 412

Converts protoheme IX and farnesyl diphosphate to heme O.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R460|COX10_PONAB Protoheme IX farnesyltransferase, mitochondrial OS=Pongo abelii GN=COX10 PE=2 SV=1

 Score =  300 bits (768), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 150/241 (62%), Positives = 187/241 (77%), Gaps = 3/241 (1%)

Query: 2   AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
           AG+A+AP PF+W  FL+ S+GTGL S AAN++NQ+ EVPFDS M+RTKNR LVRG +SPL
Sbjct: 175 AGFALAPGPFDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPL 234

Query: 62  HALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
            A+ FA   +  G A+L  GVN LT ALGLFN+ LYT  YTP+KRISIANTWVG+VVGAI
Sbjct: 235 LAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAI 294

Query: 122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
           PP+MGW A TGSL     GAFLL  IL++WQFPHFNALSW LR  YSR GY MM+VT+P 
Sbjct: 295 PPVMGWTAATGSL---DAGAFLLGGILYSWQFPHFNALSWGLREGYSRGGYCMMSVTHPG 351

Query: 182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKL 241
           LCR  +LR+ +ALLV+SAA P+LD+T   F + ++P+NAY +YL ++FY ++D  SSR+L
Sbjct: 352 LCRRVALRHCLALLVLSAAAPVLDITTWTFPIMALPINAYISYLGFRFYVDADRRSSRRL 411

Query: 242 F 242
           F
Sbjct: 412 F 412

Converts protoheme IX and farnesyl diphosphate to heme O.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q6C0L2|COX10_YARLI Protoheme IX farnesyltransferase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COX10 PE=3 SV=1

 Score =  225 bits (574), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 121/275 (44%), Positives = 170/275 (61%), Gaps = 16/275 (5%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           M+ YA+ P     ++ L  ++GT L S +ANA+N   E  +DS M+RT+ R +VRG ++P
Sbjct: 179 MSSYALTPEAVSLTNLLFLTVGTALCSGSANAINMGREPAYDSMMTRTRGRPVVRGAVTP 238

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
             A  FA  +   GTA LYFGVN   A LG  N+ LY  +YT +KR  I NTWVG+VVGA
Sbjct: 239 NQAFTFAGITGTVGTAALYFGVNPTVAILGASNIALYGGLYTTLKRKHIINTWVGAVVGA 298

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGWAA  GSLL    GA+ L+ +L+ WQFPHFNALS+++R +Y +AGY M A  NP
Sbjct: 299 IPPLMGWAASGGSLLH--PGAWCLAGLLYAWQFPHFNALSYSIRDEYKKAGYVMTAWKNP 356

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKE-------- 232
            L     LRY + +  +       +VT+ WF L+S  LNA+  + A+KF+++        
Sbjct: 357 GLNARVGLRYALLMFPLCVGLSYYNVTDWWFVLDSSVLNAWMAWWAFKFWQQENVNIALA 416

Query: 233 ------SDSSSSRKLFRFSLLHLPALMILLLINKK 261
                 S +  +RKLF  S++HLP +++L +I+KK
Sbjct: 417 AAGKQYSQNPFARKLFWGSVVHLPGVLLLAMIHKK 451

Converts protoheme IX and farnesyl diphosphate to heme O.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q4I5G1|COX10_GIBZE Protoheme IX farnesyltransferase, mitochondrial OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=COX10 PE=3 SV=1

 Score =  205 bits (522), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/288 (40%), Positives = 169/288 (58%), Gaps = 27/288 (9%)

Query: 1   MAGYAMAPAPFEWS------------SFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRT 48
           MA YA+ P P   S            + L  ++GT   S++ANA+N  +E   D++M+RT
Sbjct: 175 MATYALYPVPEMLSPSTTETPSLSPLTLLFLTIGTTFCSASANALNMLYEPSTDAKMTRT 234

Query: 49  KNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRIS 108
           +NR LVR ++S   A+ FA+ S   GT  LYFGVN   + LG  N+V+Y  +YTP+K ++
Sbjct: 235 RNRPLVRNLISKRAAVLFAILSGFVGTGALYFGVNPTVSGLGFANIVIYAGMYTPLKAVT 294

Query: 109 IANTWVGSVVGAIPPLMGWAACTGSLL-------------DGSG-GAFLLSAILFTWQFP 154
             NTW+G+VVG IPPLMGWAA  G                DGS  G ++++ +LF WQFP
Sbjct: 295 AFNTWIGAVVGGIPPLMGWAAAAGETATKDGSWRELLFASDGSSIGGWVMAGLLFAWQFP 354

Query: 155 HFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALE 214
           HF ALSW +R +Y +AG RM+A TNP      +LRY+   + +  +     VT   FA+ 
Sbjct: 355 HFMALSWPIREEYKKAGLRMLAWTNPARNGRVALRYSFVFIPLCLSLCAAGVTEWSFAVT 414

Query: 215 SIPLNAYFTYLAYKFYK-ESDSSSSRKLFRFSLLHLPALMILLLINKK 261
           S P+NA+    + +F++ E +  S+R LF  S+ HLP +MIL L++KK
Sbjct: 415 SFPINAWLIRESVRFWRYEGNKGSARGLFWASVWHLPGVMILALLHKK 462

Converts protoheme IX and farnesyl diphosphate to heme O.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q9Y7Y4|COX10_SCHPO Protoheme IX farnesyltransferase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox10 PE=3 SV=1

 Score =  205 bits (521), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/243 (45%), Positives = 152/243 (62%), Gaps = 2/243 (0%)

Query: 1   MAGYAMAPAP-FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLS 59
           M+ YA+AP P   +++    ++GT L S +ANA NQ  E   D QM+RT++R + RG + 
Sbjct: 104 MSSYALAPYPGLSFNTLAWLTMGTALCSISANAFNQSMEPMLDCQMARTRSRPIPRGAIR 163

Query: 60  PLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVG 119
           P +A  FA  +  AGT+M +  VN     LGL N+VLY  +YTP+KRISI NTWVGS+VG
Sbjct: 164 PEYAWLFATLTGIAGTSMSFL-VNPTVGWLGLGNIVLYMGIYTPLKRISIVNTWVGSLVG 222

Query: 120 AIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN 179
           AIPPLMGWAAC+G  L    G  + +A+LF WQFPHFNA S  ++ DY + GY+MMA  N
Sbjct: 223 AIPPLMGWAACSGGDLLSHPGGLITAAMLFAWQFPHFNAFSTMVKDDYKKCGYQMMAWKN 282

Query: 180 PDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSR 239
           P L    SLRY +A L +S A     +   W+A+ +   N +    A+KFY+  +  ++R
Sbjct: 283 PALNARVSLRYALAFLPLSYAYISTGLVGPWYAVPATGTNMFLIARAWKFYRNRNYQNAR 342

Query: 240 KLF 242
            LF
Sbjct: 343 SLF 345

Converts protoheme IX and farnesyl diphosphate to heme O.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q6BKW6|COX10_DEBHA Protoheme IX farnesyltransferase, mitochondrial OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=COX10 PE=3 SV=2

 Score =  204 bits (520), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 116/277 (41%), Positives = 162/277 (58%), Gaps = 19/277 (6%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           +  YA++P        L  ++GT L S AANA+N   E  FD +M RT  R +VRG++SP
Sbjct: 161 ICSYAISPYTVSLPELLFLTMGTALCSGAANAINMGREPEFDKKMPRTVGRPVVRGLISP 220

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
             A  FA  + + G  ML+ GVN   + LG  N+VLY+ +YT +KR SI NTWVG++VGA
Sbjct: 221 KQAYQFAGITGSLGCTMLFLGVNPTVSFLGFLNIVLYSWIYTSLKRKSIINTWVGAIVGA 280

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGWAA   S LD   GA+ L+ +L+ WQFPHFNALS N+   Y  AGY M A  NP
Sbjct: 281 IPPLMGWAA--SSPLDHP-GAWCLAGLLYAWQFPHFNALSHNIADQYKGAGYVMTAAENP 337

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSS---- 236
            L    +LRY++ +  +        +T+  F  +S   N++ TYLAYKF+ +   +    
Sbjct: 338 KLNARVALRYSLLMFPLCFGLSYFGITDWVFQFDSAIANSWLTYLAYKFWMQIKQNYTGQ 397

Query: 237 ------------SSRKLFRFSLLHLPALMILLLINKK 261
                        ++KLF  S+ HLPA++IL +++KK
Sbjct: 398 KPTANGIAMANIHAKKLFWGSVWHLPAVLILAMLHKK 434

Converts protoheme IX and farnesyl diphosphate to heme O.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q7S5E7|COX10_NEUCR Protoheme IX farnesyltransferase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cox-10 PE=3 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 123/291 (42%), Positives = 162/291 (55%), Gaps = 30/291 (10%)

Query: 1   MAGYAMAPAP-FEWSSFLICSLGTGL--------------VSSAANAVNQYHEVPFDSQM 45
           M  YA+ P P F  SS L  SL   L               S++ANA+N  +E   DS+M
Sbjct: 201 MVPYALYPVPSFLTSSALDTSLAPSLSPLTLLFLTTGTTLCSASANALNMLYEPDTDSKM 260

Query: 46  SRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMK 105
           +RT+ R LVR +L+   A+ FA+    AGT  LYFGVN   + LG  N+ LY   YTP+K
Sbjct: 261 TRTRTRPLVRRLLTTKAAVLFAVGCGLAGTLALYFGVNPTVSFLGAANIALYAGAYTPLK 320

Query: 106 RISIANTWVGSVVGAIPPLMGWAACTGSLLDGSG--------------GAFLLSAILFTW 151
           RIS  NTWVG++VG IPPLMGWAA  G    G G              G +L + +LF W
Sbjct: 321 RISAVNTWVGAIVGGIPPLMGWAAAAGESATGDGTWRELLFASDGSSLGGWLFAGLLFAW 380

Query: 152 QFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWF 211
           QFPHF  LSW +R +Y  AG RM+A TNP      +LRY++A + +        VT   F
Sbjct: 381 QFPHFMPLSWGIRHEYKAAGLRMLAWTNPARNGRVALRYSLAFIPLCVGLSATGVTEWSF 440

Query: 212 ALESIPLNAYFTYLAYKFYK-ESDSSSSRKLFRFSLLHLPALMILLLINKK 261
           A+ S+P+NA+  + A KF++ E    S+R LF  S+ HLP +M+L L  KK
Sbjct: 441 AVTSLPVNAWLVWEAIKFWRLEGHKGSARGLFWASVWHLPVIMVLALAQKK 491

Converts protoheme IX and farnesyl diphosphate to heme O.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q6CTW6|COX10_KLULA Protoheme IX farnesyltransferase, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=COX10 PE=3 SV=1

 Score =  202 bits (513), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/282 (40%), Positives = 165/282 (58%), Gaps = 24/282 (8%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           +  YA++P P      L  ++GT L S++ANA+N   E  FD QM RT+ R +VRG++SP
Sbjct: 159 ICSYALSPYPATVLQLLSLTVGTTLCSASANAINMGREPDFDRQMIRTQARPVVRGIVSP 218

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
             A  FA A+   GT++L+ GVN   A LG  N+ LY  +YT +KR  I NTWVG++VGA
Sbjct: 219 NQAFKFATAAGTLGTSILWLGVNPTVAFLGFSNIALYAWLYTSLKRKHIINTWVGALVGA 278

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGWAA +        GA+ L+ +L+ WQFPHFN LS N+R +Y  AGY M A  NP
Sbjct: 279 IPPLMGWAASSPL---SHPGAWCLAGLLYAWQFPHFNTLSHNIRNEYKNAGYVMTAWKNP 335

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS-- 238
            L    +LRY++ +  +       +VT+ ++ L+S  +NA+ +  A+KFY +   + S  
Sbjct: 336 KLNARVALRYSLLMFPLCFGLSYFNVTDWYYQLDSAFVNAWMSLWAFKFYFQQKRNYSKE 395

Query: 239 -------------------RKLFRFSLLHLPALMILLLINKK 261
                              R+ F  S+LHLPA++IL +++KK
Sbjct: 396 IYNNKTEFNKGLAMANVYARRTFWVSVLHLPAVLILAILHKK 437

Converts protoheme IX and farnesyl diphosphate to heme O.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q6FUG4|COX10_CANGA Protoheme IX farnesyltransferase, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=COX10 PE=3 SV=1

 Score =  201 bits (510), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 115/296 (38%), Positives = 169/296 (57%), Gaps = 27/296 (9%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           +  YA++P P   +  L  ++GT + S AANA+N   E  +D QM RT+ R +VRG ++P
Sbjct: 157 ICSYALSPYPATVTELLCLTVGTTMCSGAANAINMGREPDYDRQMIRTQARPVVRGAVTP 216

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
             A  FA      GT++LY GVN   AALGL N+ LY+ +YT +KR  I NTWVG++VGA
Sbjct: 217 KQAFSFAFGMGTLGTSILYLGVNPTVAALGLSNIALYSWIYTSLKRKHIINTWVGALVGA 276

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGWAA +     GS   + L+ +L+ WQFPHFN LS N+R +Y  AGY M A  NP
Sbjct: 277 IPPLMGWAAASPLTHPGS---WCLAGLLYAWQFPHFNTLSHNIRNEYKNAGYVMTAWKNP 333

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS-- 238
            L    +LRY++ +  +       ++T+ ++ ++S  +NA+    ++KFY +   + S  
Sbjct: 334 LLNARVALRYSLLMFPLCFGLSYFNITDWYYQIDSGLVNAWLCLWSFKFYMQQRLNYSSK 393

Query: 239 -------------------RKLFRFSLLHLPALMILLLINKKH---WASHGSDAAK 272
                              RK F  S+LHLPA++IL +++KK+   W    S+  K
Sbjct: 394 IKNDRVKFNEGLATANVYARKAFFASVLHLPAVLILAILHKKNRWDWLFEDSENPK 449

Converts protoheme IX and farnesyl diphosphate to heme O.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
194859795	391	GG10107 [Drosophila erecta] gi|190661319	0.924	0.723	0.695	1e-115
195473607	391	GE18922 [Drosophila yakuba] gi|194175185	0.924	0.723	0.698	1e-115
195578137	391	GD23677 [Drosophila simulans] gi|1941909	0.924	0.723	0.692	1e-115
19921064	391	CG5037 [Drosophila melanogaster] gi|7297	0.924	0.723	0.685	1e-114
195050631	351	GH13369 [Drosophila grimshawi] gi|193899	0.931	0.811	0.686	1e-112
195387463	333	GJ17536 [Drosophila virilis] gi|19414887	0.911	0.837	0.680	1e-112
195119237	362	GI18678 [Drosophila mojavensis] gi|19391	0.849	0.718	0.707	1e-108
357605661	412	hypothetical protein KGM_21775 [Danaus p	0.892	0.662	0.673	1e-108
289739955	421	heme A farnesyltransferase [Glossina mor	0.849	0.617	0.711	1e-107
91090860	381	PREDICTED: similar to CG5037 CG5037-PA [	0.905	0.727	0.675	1e-107

>gi|194859795|ref|XP_001969452.1| GG10107 [Drosophila erecta] gi|190661319|gb|EDV58511.1| GG10107 [Drosophila erecta]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/289 (69%), Positives = 238/289 (82%), Gaps = 6/289 (2%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           M GYAMAPA FE ++F +C+LGTGLVS+AANA+NQYHEVPFDSQMSRTKNRVLV G ++P
Sbjct: 93  MGGYAMAPAAFEPTTFAMCTLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQMTP 152

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
           LHA+ FA  S+ AG +MLYFGVNGLTAALG  N+ LYT++YTPMKRISI NTWVGS+VGA
Sbjct: 153 LHAVTFATVSATAGLSMLYFGVNGLTAALGAGNLFLYTTIYTPMKRISIVNTWVGSIVGA 212

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGWA C G+L     GA +L+ +L+ WQFPHFNALSWNLRPDYSRAGYRMMAVTNP
Sbjct: 213 IPPLMGWAGCAGTL---DAGAMILAGVLYAWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 269

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240
            LCR T+LRY+VA+  +SA  P+LDVTN WFALE++PLNAYF YLAYKFY++SDS SSRK
Sbjct: 270 GLCRRTALRYSVAIAGLSAMAPVLDVTNYWFALETLPLNAYFAYLAYKFYEKSDSGSSRK 329

Query: 241 LFRFSLLHLPALMILLLINKKHW---ASHGSDAAKDSIEVSVQPSIDSL 286
           LFRFSL+HLPALM+L L NKK W      G +  K+S  ++++ S  SL
Sbjct: 330 LFRFSLIHLPALMLLFLANKKEWYFSKPAGEENKKESTYIALKQSATSL 378

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195473607|ref|XP_002089084.1| GE18922 [Drosophila yakuba] gi|194175185|gb|EDW88796.1| GE18922 [Drosophila yakuba]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/289 (69%), Positives = 238/289 (82%), Gaps = 6/289 (2%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           M GYAMAPA F+ ++F +C+LGTGLVS+AANA+NQYHEVPFDSQMSRTKNRVLV G ++P
Sbjct: 93  MGGYAMAPAAFDPTTFAMCTLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQMTP 152

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
           LHA+ FA AS+ AG +MLYFGVNGLTAALG  N+ LYT++YTPMKRISI NTWVGS+VGA
Sbjct: 153 LHAVTFAAASATAGLSMLYFGVNGLTAALGAGNLFLYTTIYTPMKRISIVNTWVGSIVGA 212

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGWA C G+L     GA +L+ IL+ WQFPHFNALSWNLRPDYSRAGYRMMAVTNP
Sbjct: 213 IPPLMGWAGCAGTL---DAGAMILAGILYAWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 269

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240
            LCR T+LRY+VA+  +SA  P+LDVTN WFALE++PLNAYF YLAYKFY++SDS SSRK
Sbjct: 270 GLCRRTALRYSVAIAGLSAMAPVLDVTNYWFALETLPLNAYFAYLAYKFYEKSDSGSSRK 329

Query: 241 LFRFSLLHLPALMILLLINKKHW---ASHGSDAAKDSIEVSVQPSIDSL 286
           LFRFSL+HLPALM+L L NKK W      G +  K+S   +++ S  SL
Sbjct: 330 LFRFSLIHLPALMLLFLANKKEWYFSKPAGEENKKESTYNAIKQSASSL 378

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195578137|ref|XP_002078922.1| GD23677 [Drosophila simulans] gi|194190931|gb|EDX04507.1| GD23677 [Drosophila simulans]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/289 (69%), Positives = 237/289 (82%), Gaps = 6/289 (2%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           M GYAMAPA F+ ++F +C+LGTGLVS+AANA+NQYHEVPFDSQMSRTKNRVLV G ++P
Sbjct: 93  MGGYAMAPAAFDPTTFAMCTLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQMTP 152

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
           LHA+ FA  S+ AG +MLYFGVNGLTAALG  N+ LYT++YTPMKRISI NTWVGS+VGA
Sbjct: 153 LHAVTFAAVSATAGLSMLYFGVNGLTAALGAGNLFLYTTIYTPMKRISIVNTWVGSIVGA 212

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGWA C G+L     GA +L+ +L+ WQFPHFNALSWNLRPDYSRAGYRMMAVTNP
Sbjct: 213 IPPLMGWAGCAGTL---DAGAMILAGVLYAWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 269

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240
            LCR T+LRY+VA+  +SA  P+LDVTN WFALE++PLNAYF YLAYKFY++SDS SSRK
Sbjct: 270 GLCRRTALRYSVAIAGLSAMAPVLDVTNYWFALETLPLNAYFAYLAYKFYEKSDSGSSRK 329

Query: 241 LFRFSLLHLPALMILLLINKKHW---ASHGSDAAKDSIEVSVQPSIDSL 286
           LFRFSL+HLPALM+L L NKK W      G +  K+S   +++ S  SL
Sbjct: 330 LFRFSLIHLPALMLLFLANKKEWYFSKPAGEENKKESTYSAIKHSASSL 378

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921064|ref|NP_609382.1| CG5037 [Drosophila melanogaster] gi|7297663|gb|AAF52915.1| CG5037 [Drosophila melanogaster] gi|16198131|gb|AAL13868.1| LD33876p [Drosophila melanogaster] gi|220946010|gb|ACL85548.1| CG5037-PA [synthetic construct] gi|220955756|gb|ACL90421.1| CG5037-PA [synthetic construct]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/289 (68%), Positives = 237/289 (82%), Gaps = 6/289 (2%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           M GYAMAPA F+ ++F +C+LGTGLVS+AANA+NQYHEVPFDSQMSRTKNRVLV G ++P
Sbjct: 93  MGGYAMAPAAFDPTTFAMCTLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQMTP 152

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
           LHA+ FA  S+ AG +MLYFGVNGLTAALG  N+ LYT++YTPMKRISI NTWVGS+VGA
Sbjct: 153 LHAVTFAAVSATAGLSMLYFGVNGLTAALGAGNLFLYTTIYTPMKRISIVNTWVGSIVGA 212

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGWA C  +L     GA +L+ +L+ WQFPHFNALSWNLRPDYSRAGYRMMAVTNP
Sbjct: 213 IPPLMGWAGCAATL---DAGAMILAGVLYAWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 269

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240
            LCR T+LRY+VA++ +SA  P+LDVTN WFALE++PLNAYF YLAYKF+++SDS SSRK
Sbjct: 270 GLCRRTALRYSVAIVGLSAMAPVLDVTNYWFALETLPLNAYFAYLAYKFHEKSDSGSSRK 329

Query: 241 LFRFSLLHLPALMILLLINKKHW---ASHGSDAAKDSIEVSVQPSIDSL 286
           LFRFSL+HLPALM+L L NKK W      G +  K+S   +++ S  SL
Sbjct: 330 LFRFSLIHLPALMLLFLTNKKEWYFSKPAGEENKKESTYSAIKHSASSL 378

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195050631|ref|XP_001992934.1| GH13369 [Drosophila grimshawi] gi|193899993|gb|EDV98859.1| GH13369 [Drosophila grimshawi]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/290 (68%), Positives = 234/290 (80%), Gaps = 5/290 (1%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           M GYAMAPA F+ ++F++CS+GTGLVS+AAN++NQYHEVPFDSQMSRTKNRVLV G ++P
Sbjct: 50  MGGYAMAPAAFDLTTFVMCSVGTGLVSAAANSINQYHEVPFDSQMSRTKNRVLVTGQMTP 109

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
           L A+GFA  S+  G  MLYFGVNGLTAALG  N+ LYTSVYTPMKR+SIANTWVGSVVGA
Sbjct: 110 LQAVGFAAVSATTGLCMLYFGVNGLTAALGAGNLFLYTSVYTPMKRMSIANTWVGSVVGA 169

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGWA C GSL     GA +L+ +L+ WQFPHFNALSWNLRPDYSRAGYRMMAVTNP
Sbjct: 170 IPPLMGWAGCAGSL---DAGAMILAGVLYAWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 226

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240
           DLCR T+LRY  A+  +S   PLLDVTN WF LE++PLNAYF YLAYKF+ +SDS SSRK
Sbjct: 227 DLCRRTALRYAFAIGGLSMMAPLLDVTNYWFVLETLPLNAYFCYLAYKFHHKSDSGSSRK 286

Query: 241 LFRFSLLHLPALMILLLINKKHWASHGSDAAKDSIEVSVQPSIDSLITPP 290
           LFRFSL+HLPALM+L L NKK W  + ++ A + +  S +  +  L T P
Sbjct: 287 LFRFSLIHLPALMLLFLANKKKW--YFTENADEKVTKSDKTFMSLLPTSP 334

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195387463|ref|XP_002052415.1| GJ17536 [Drosophila virilis] gi|194148872|gb|EDW64570.1| GJ17536 [Drosophila virilis]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/288 (68%), Positives = 233/288 (80%), Gaps = 9/288 (3%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           M GYAMAPA F+ ++F +C+LGTGLVS+AANA+NQYHEVPFDSQMSRTKNRVLV G ++P
Sbjct: 32  MGGYAMAPAAFDLTTFAMCTLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQITP 91

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
           L A+GFA+ S+ +G  +LYFGVNGLTAALG  N+ LYTS+YTPMKR+SIANTW+GS+VGA
Sbjct: 92  LKAVGFAVVSATSGLCLLYFGVNGLTAALGAGNLFLYTSIYTPMKRMSIANTWIGSIVGA 151

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGWA CTG+L     GA +L+ IL+ WQFPHFNALSWNLRPDYSRAGYRMMAVTNP
Sbjct: 152 IPPLMGWAGCTGTL---DAGAMILAGILYAWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 208

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240
            LCR T+LRY  A+  +S   PL DVTN WFALE++PLNAYF YLAY+F  +SDS SSRK
Sbjct: 209 GLCRRTALRYAFAICGLSMVAPLADVTNYWFALETLPLNAYFCYLAYEFKSKSDSGSSRK 268

Query: 241 LFRFSLLHLPALMILLLINKKHWASHGSDAAKDSIEVSVQPSIDSLIT 288
           LFRFSL+HLPALM+L L NKK+W        KD++E     S DS ++
Sbjct: 269 LFRFSLIHLPALMLLFLANKKNW------YFKDNVEEKHVKSDDSYVS 310

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195119237|ref|XP_002004138.1| GI18678 [Drosophila mojavensis] gi|193914713|gb|EDW13580.1| GI18678 [Drosophila mojavensis]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/263 (70%), Positives = 220/263 (83%), Gaps = 3/263 (1%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           M GY MAPA F+ +SF++C+LGTGLVS+AANAVNQYHEVPFDSQMSRTKNRVLV G ++P
Sbjct: 61  MGGYVMAPASFDATSFVMCTLGTGLVSAAANAVNQYHEVPFDSQMSRTKNRVLVTGQITP 120

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
           L+ALGFA+ S+  G  +LYFGVNGLTAALG  N+ LYTS+YTPMKRISIANTWVGS+VGA
Sbjct: 121 LNALGFAVVSATTGLCLLYFGVNGLTAALGAGNLFLYTSIYTPMKRISIANTWVGSIVGA 180

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGW+ CTG+L     GA +L+ +L+ WQFPHFNALSWNLRPDYSRAGYRMMAV +P
Sbjct: 181 IPPLMGWSGCTGTL---DTGAMILAGVLYAWQFPHFNALSWNLRPDYSRAGYRMMAVIDP 237

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240
            LCR T+LRY + +  +S A P  ++TN WF LES+PLN Y  YLAYKFY++SDS SSR+
Sbjct: 238 ALCRRTALRYALVICGMSLAAPFFNITNYWFVLESLPLNIYLCYLAYKFYQKSDSGSSRR 297

Query: 241 LFRFSLLHLPALMILLLINKKHW 263
           LFRFSL+HLPALM+L L NKK W
Sbjct: 298 LFRFSLIHLPALMLLFLANKKKW 320

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605661|gb|EHJ64723.1| hypothetical protein KGM_21775 [Danaus plexippus]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/276 (67%), Positives = 227/276 (82%), Gaps = 3/276 (1%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           MAGYA+APAPF+ ++F +C+LGTGLVSSAAN++NQYHEVPFD+QMSRTKNRVLV+G+L P
Sbjct: 105 MAGYALAPAPFDLTTFTLCALGTGLVSSAANSINQYHEVPFDAQMSRTKNRVLVKGLLEP 164

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
           +HA+GFA A+S  G  +LYFGVN LTAALG  N+VLYTS+YTP+KRISI NTW+GSVVGA
Sbjct: 165 VHAIGFAAATSMTGLGLLYFGVNPLTAALGAGNLVLYTSIYTPLKRISILNTWLGSVVGA 224

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPP+MGWA C+G L     GA +L+ +L++WQFPHFNALSWNLRPDYSRAGYRMMAVT+P
Sbjct: 225 IPPMMGWAGCSGHL---DAGALVLAVLLYSWQFPHFNALSWNLRPDYSRAGYRMMAVTDP 281

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240
            LCR  +LR+T  +     A    +VTN+WFALES+PLN YF YLA+ FYK SDS SSRK
Sbjct: 282 ALCRRVALRHTGVITATCLASSYFEVTNMWFALESLPLNIYFMYLAWNFYKNSDSGSSRK 341

Query: 241 LFRFSLLHLPALMILLLINKKHWASHGSDAAKDSIE 276
           LFRFSL+HLPALM+L+L+NKK+W+S       + I 
Sbjct: 342 LFRFSLIHLPALMLLMLVNKKYWSSSEPQENSEIIR 377

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289739955|gb|ADD18725.1| heme A farnesyltransferase [Glossina morsitans morsitans]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/263 (71%), Positives = 222/263 (84%), Gaps = 3/263 (1%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           MAGYAMAPAPFE S+F++CSLGTGLVS+AANA+NQYHEVPFDSQMSRTKNRVLV G L+P
Sbjct: 107 MAGYAMAPAPFELSTFIMCSLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGKLTP 166

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
           LH++GFA+ S+A G  +L+FGVN L A L   N+ LYTS+YTPMKR++I NTWVGSVVGA
Sbjct: 167 LHSIGFAVTSAACGIGLLHFGVNDLAALLSAANLFLYTSIYTPMKRMTILNTWVGSVVGA 226

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPL+GWA C+GSL     GA++L  +L+ WQFPHFNALSWNLRPDYSRAGYRMMAVTNP
Sbjct: 227 IPPLIGWAGCSGSL---DIGAYILCGLLYAWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 283

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240
           DLCR T+LRYT A+ ++S   P+ D+TN+WFAL S+PLN YF YLAYKFY+ SDS SSRK
Sbjct: 284 DLCRRTALRYTFAIGLLSFMAPVFDITNIWFALGSLPLNGYFCYLAYKFYQHSDSGSSRK 343

Query: 241 LFRFSLLHLPALMILLLINKKHW 263
           LFR+SL+HLP LM + L+ K HW
Sbjct: 344 LFRYSLIHLPLLMAMFLLCKTHW 366

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090860|ref|XP_972689.1| PREDICTED: similar to CG5037 CG5037-PA [Tribolium castaneum] gi|270013242|gb|EFA09690.1| hypothetical protein TcasGA2_TC011818 [Tribolium castaneum]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/280 (67%), Positives = 225/280 (80%), Gaps = 3/280 (1%)

Query: 1   MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           MAGYA+APAPFEW  F +C  GTGL+S+AANAVNQ+HEVPFD+QM+RTK+RVLV G L+P
Sbjct: 102 MAGYAVAPAPFEWGPFALCIAGTGLLSAAANAVNQFHEVPFDAQMNRTKHRVLVCGRLTP 161

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
           LH++ FA  +S +G A+L FGVNGLTA LGL N +LYTS+YTPMKR+SI NTWVGS+VGA
Sbjct: 162 LHSILFAATTSLSGLAILNFGVNGLTATLGLTNFILYTSIYTPMKRMSILNTWVGSIVGA 221

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGWAAC  SL     GA+L++A+L++WQFPHFNALSWNLRPDYSRAGYRMMAVT+P
Sbjct: 222 IPPLMGWAACANSL---GPGAWLMAALLYSWQFPHFNALSWNLRPDYSRAGYRMMAVTDP 278

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240
            LCR  +LR+TVAL  ++ A P LDVTN WF LE+ PLN YF YLAY FYK+S S SSRK
Sbjct: 279 GLCRRVALRHTVALEAMTIAAPFLDVTNWWFVLEASPLNLYFIYLAYDFYKDSSSQSSRK 338

Query: 241 LFRFSLLHLPALMILLLINKKHWASHGSDAAKDSIEVSVQ 280
           LFRFSL+HLP LMIL L+NKK W     D  +     +V+
Sbjct: 339 LFRFSLIHLPLLMILFLVNKKKWFVFDEDTERSCSVKNVE 378

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	306
FB|FBgn0032222	391	CG5037 [Drosophila melanogaste	0.924	0.723	0.581	9.9e-87
UNIPROTKB|Q12887	443	COX10 "Protoheme IX farnesyltr	0.722	0.498	0.616	1.1e-71
UNIPROTKB|E2RHC0	440	COX10 "Uncharacterized protein	0.722	0.502	0.607	2.1e-70
ZFIN|ZDB-GENE-041111-239	470	cox10 "COX10 homolog, cytochro	0.725	0.472	0.613	2.6e-70
RGD|1594623	442	Cox10 "cytochrome c oxidase as	0.722	0.5	0.598	7e-70
MGI|MGI:1917633	443	Cox10 "cytochrome c oxidase as	0.722	0.498	0.593	1.4e-69
UNIPROTKB|A5D7D6	443	COX10 "Uncharacterized protein	0.722	0.498	0.598	6.3e-69
UNIPROTKB|Q5ZJY8	448	COX10 "Protoheme IX farnesyltr	0.722	0.493	0.598	3.5e-68
UNIPROTKB|B4DJ50	251	COX10 "cDNA FLJ52303, highly s	0.617	0.752	0.614	2.7e-59
UNIPROTKB|F1SS45	236	COX10 "Uncharacterized protein	0.614	0.796	0.591	9.6e-57

FB|FBgn0032222 CG5037 [Drosophila melanogaster (taxid:7227)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 168/289 (58%), Positives = 199/289 (68%)

Query:     1 MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
             M GYAMAPA F+ ++F +C+LGTGLVS+AANA+NQYHEVPFDSQMSRTKNRVLV G ++P
Sbjct:    93 MGGYAMAPAAFDPTTFAMCTLGTGLVSAAANAINQYHEVPFDSQMSRTKNRVLVTGQMTP 152

Query:    61 LHXXXXXXXXXXXXXXMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
             LH              MLYFGVNGLTAALG  N+ LYT++YTPMKRISI NTWVGS+VGA
Sbjct:   153 LHAVTFAAVSATAGLSMLYFGVNGLTAALGAGNLFLYTTIYTPMKRISIVNTWVGSIVGA 212

Query:   121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
             IPPLMGWA C  +L     GA +L+ +L+ WQFPHFNALSWNLRPDYSRAGYRMMAVTNP
Sbjct:   213 IPPLMGWAGCAATL---DAGAMILAGVLYAWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 269

Query:   181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAXXXXXXXXXXXXXX 240
              LCR T+LRY+VA++ +SA  P+LDVTN WFALE++PLNAYF YLA              
Sbjct:   270 GLCRRTALRYSVAIVGLSAMAPVLDVTNYWFALETLPLNAYFAYLAYKFHEKSDSGSSRK 329

Query:   241 XXXXXXXXXXXXXXXXXINKKHW---ASHGSDAAKDSIEVSVQPSIDSL 286
                               NKK W      G +  K+S   +++ S  SL
Sbjct:   330 LFRFSLIHLPALMLLFLTNKKEWYFSKPAGEENKKESTYSAIKHSASSL 378

GO:0008535 "respiratory chain complex IV assembly" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q12887 COX10 "Protoheme IX farnesyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 138/224 (61%), Positives = 168/224 (75%)

Query:     2 AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
             AG+A+AP PF+W  FL+ S+GTGL S AAN++NQ+ EVPFDS M+RTKNR LVRG +SPL
Sbjct:   175 AGFALAPGPFDWPCFLLTSVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPL 234

Query:    62 HXXXXXXXXXXXXXXMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
                            +L  GVN LT ALGLFN+ LYT  YTP+KRISIANTWVG+VVGAI
Sbjct:   235 LAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPLKRISIANTWVGAVVGAI 294

Query:   122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
             PP+MGW A TGSL     GAFLL  IL++WQFPHFNALSW LR DYSR GY MM+VT+P 
Sbjct:   295 PPVMGWTAATGSL---DAGAFLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPG 351

Query:   182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYL 225
             LCR  +LR+ +ALLV+SAA P+LD+T   F + ++P+NAY +YL
Sbjct:   352 LCRRVALRHCLALLVLSAAAPVLDITTWTFPIMALPINAYISYL 395

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0017004 "cytochrome complex assembly" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0004311 "farnesyltranstransferase activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=IC

GO:0045333 "cellular respiration" evidence=IGI

GO:0004129 "cytochrome-c oxidase activity" evidence=IMP

GO:0006123 "mitochondrial electron transport, cytochrome c to oxygen" evidence=IC

GO:0006784 "heme a biosynthetic process" evidence=IMP

GO:0008535 "respiratory chain complex IV assembly" evidence=IMP

UNIPROTKB|E2RHC0 COX10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 136/224 (60%), Positives = 166/224 (74%)

Query:     2 AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
             AG+A+AP PF+W  FL+ SLGTGL S AAN++NQ+ EVPFDS M+RTKNR LVRG +SPL
Sbjct:   171 AGFALAPGPFDWPCFLLTSLGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPL 230

Query:    62 HXXXXXXXXXXXXXXMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
                            +L +GVN LT ALG+FN+ LYT  YTP+KRISIANTWVG+VVGA+
Sbjct:   231 LAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPLKRISIANTWVGAVVGAV 290

Query:   122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
             PP+MGW A TGSL     GAFLL  IL++WQFPHFNALSW LR DYSR GY MM+VT+P 
Sbjct:   291 PPVMGWTAATGSL---DAGAFLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPA 347

Query:   182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYL 225
             LCR  +LR+ +AL+ +S A P+LDVT   F + S+P+N Y TYL
Sbjct:   348 LCRRVALRHCLALIGLSTAAPVLDVTTWTFPVISLPINLYITYL 391

GO:0017004 "cytochrome complex assembly" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0006784 "heme a biosynthetic process" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-041111-239 cox10 "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)" [Danio rerio (taxid:7955)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 138/225 (61%), Positives = 164/225 (72%)

Query:     2 AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
             AG+AMAP PF+   FL+ SLGTGL S  AN++NQY EVPFDS M+RTKNR LVRG +SPL
Sbjct:   195 AGFAMAPVPFDPVGFLMASLGTGLSSCTANSINQYFEVPFDSNMNRTKNRPLVRGQISPL 254

Query:    62 HXXXXXXXXXXXXXXMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
             H              +L  GVN LT  LG  N+ LYT  YTP+KR+SIANTWVG+VVGAI
Sbjct:   255 HAVSFALACGIPGVTLLTLGVNPLTGFLGSLNIFLYTCCYTPLKRLSIANTWVGAVVGAI 314

Query:   122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
             PP+MGW A TGSL     GA LL A LF+WQFPHFNALSWNLR DYSR GYRMM+VT+P 
Sbjct:   315 PPVMGWTAATGSL---DPGALLLGAFLFSWQFPHFNALSWNLREDYSRGGYRMMSVTHPG 371

Query:   182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLA 226
             LC+  +LR++V L+ +SA GP+LDVT   F L S+P+N Y +YLA
Sbjct:   372 LCKRVALRHSVGLIFLSALGPVLDVTTWTFPLVSLPINLYISYLA 416

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

RGD|1594623 Cox10 "cytochrome c oxidase assembly homolog 10 (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 134/224 (59%), Positives = 165/224 (73%)

Query:     2 AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
             AG+A+AP PF+WS FL+ SLGTGL S AAN++NQ+ EVPFDS MSRTKNR LVRG +SPL
Sbjct:   173 AGFALAPCPFDWSCFLLTSLGTGLASCAANSINQFFEVPFDSNMSRTKNRPLVRGQISPL 232

Query:    62 HXXXXXXXXXXXXXXMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
                            +L +GVN LT ALG+FN+ LYT  YTP+KR+SIANTWVG+VVGAI
Sbjct:   233 LAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPLKRVSIANTWVGAVVGAI 292

Query:   122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
             PP+MGW A TGSL     GA LL  IL++WQFPHFNALSW LR DYSR GY MM+VT+P 
Sbjct:   293 PPVMGWTAATGSL---DAGALLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPA 349

Query:   182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYL 225
             LCR  +LR+ +AL+ +S   P+LD+T   F + S+P+N Y +YL
Sbjct:   350 LCRRVALRHCLALIALSTTAPVLDITTWVFPVISLPINLYISYL 393

GO:0000266 "mitochondrial fission" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0006784 "heme a biosynthetic process" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0008535 "respiratory chain complex IV assembly" evidence=ISO

GO:0009060 "aerobic respiration" evidence=ISO

GO:0017004 "cytochrome complex assembly" evidence=ISO

GO:0045333 "cellular respiration" evidence=ISO

GO:0004129 "cytochrome-c oxidase activity" evidence=ISO

MGI|MGI:1917633 Cox10 "cytochrome c oxidase assembly protein 10" [Mus musculus (taxid:10090)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 133/224 (59%), Positives = 165/224 (73%)

Query:     2 AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
             AG+A+AP PF+WS FL+ SLGTGL S AAN++NQ+ EVPFDS M+RTKNR LVRG +SPL
Sbjct:   174 AGFALAPGPFDWSCFLLTSLGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPL 233

Query:    62 HXXXXXXXXXXXXXXMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
                            +L +GVN LT ALG+FN+ LYT  YTP+KR+SI NTWVG+VVGAI
Sbjct:   234 LAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPLKRVSITNTWVGAVVGAI 293

Query:   122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
             PP+MGW A TGSL     GA LL  IL++WQFPHFNALSW LR DYSR GY MM+VT+P 
Sbjct:   294 PPVMGWTAATGSL---DAGALLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPA 350

Query:   182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYL 225
             LCR  +LR+ +AL+ +S A P+LD+T   F + S+P+N Y +YL
Sbjct:   351 LCRRVALRHCLALIALSTAAPVLDITTWVFPVISLPINLYISYL 394

GO:0000266 "mitochondrial fission" evidence=IMP

GO:0004311 "farnesyltranstransferase activity" evidence=ISO

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0006784 "heme a biosynthetic process" evidence=ISO;IMP;IDA

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

GO:0008535 "respiratory chain complex IV assembly" evidence=ISO

GO:0009060 "aerobic respiration" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0017004 "cytochrome complex assembly" evidence=IDA

GO:0018343 "protein farnesylation" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0045333 "cellular respiration" evidence=ISO

GO:0048034 "heme O biosynthetic process" evidence=IEA

UNIPROTKB|A5D7D6 COX10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 134/224 (59%), Positives = 164/224 (73%)

Query:     2 AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
             AG+A+APAPF+WS FL+  +GTGL S AAN++NQ+ EVPFDS M+RTKNR LVRG +SPL
Sbjct:   175 AGFALAPAPFDWSCFLLTFVGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPL 234

Query:    62 HXXXXXXXXXXXXXXMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
                            +L +GVN LT ALGLFN+ LYT  YTP+KR+SIANTWVG+VVGAI
Sbjct:   235 LAVSFATCCAVPGVALLTWGVNPLTGALGLFNIFLYTCCYTPLKRVSIANTWVGAVVGAI 294

Query:   122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
             PP+MGW A TGSL     GA LL  IL++WQFPHFNALSW LR DYSR GY MM+VT+P 
Sbjct:   295 PPVMGWTAATGSL---DAGACLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPA 351

Query:   182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYL 225
             LCR  +LR+ +ALL +  A P LDVT   F + ++P+N Y +YL
Sbjct:   352 LCRRVALRHCLALLAMCVAAPALDVTTWTFPVIALPINLYISYL 395

GO:0017004 "cytochrome complex assembly" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0006784 "heme a biosynthetic process" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

UNIPROTKB|Q5ZJY8 COX10 "Protoheme IX farnesyltransferase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 134/224 (59%), Positives = 161/224 (71%)

Query:     2 AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
             AG+AMAP PF+   FL+ SLGTGL S AAN++NQ+ EVPFDS M+RTKNR LVRG +SPL
Sbjct:   167 AGFAMAPVPFDLPCFLLASLGTGLASCAANSINQFFEVPFDSNMNRTKNRPLVRGQISPL 226

Query:    62 HXXXXXXXXXXXXXXMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
                            +L  GVN LT ALG FN+ LYT  YTPMKR+SIANTWVG+VVGAI
Sbjct:   227 LAVCFAASCGVPGIALLTMGVNPLTGALGAFNIFLYTCCYTPMKRMSIANTWVGAVVGAI 286

Query:   122 PPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPD 181
             PP+MGW A TGSL     GA LL  IL++WQFPHFNALSW LR DYSR GY MM+VT+P+
Sbjct:   287 PPVMGWTAATGSL---DAGALLLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPE 343

Query:   182 LCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYL 225
             LCR  +LR+ VAL+ +    P+LD+T   F + S+PLN Y +YL
Sbjct:   344 LCRRVALRHCVALIGLCTVAPILDITTWTFPIISLPLNLYISYL 387

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0006784 "heme a biosynthetic process" evidence=IEA

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0017004 "cytochrome complex assembly" evidence=IEA

UNIPROTKB|B4DJ50 COX10 "cDNA FLJ52303, highly similar to Protoheme IX farnesyltransferase, mitochondrial (EC 2.5.1.-)" [Homo sapiens (taxid:9606)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 118/192 (61%), Positives = 142/192 (73%)

Query:    34 NQYHEVPFDSQMSRTKNRVLVRGVLSPLHXXXXXXXXXXXXXXMLYFGVNGLTAALGLFN 93
             +Q+ EVPFDS M+RTKNR LVRG +SPL               +L  GVN LT ALGLFN
Sbjct:    15 SQFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVAILTLGVNPLTGALGLFN 74

Query:    94 MVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQF 153
             + LYT  YTP+KRISIANTWVG+VVGAIPP+MGW A TGSL     GAFLL  IL++WQF
Sbjct:    75 IFLYTCCYTPLKRISIANTWVGAVVGAIPPVMGWTAATGSL---DAGAFLLGGILYSWQF 131

Query:   154 PHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFAL 213
             PHFNALSW LR DYSR GY MM+VT+P LCR  +LR+ +ALLV+SAA P+LD+T   F +
Sbjct:   132 PHFNALSWGLREDYSRGGYCMMSVTHPGLCRRVALRHCLALLVLSAAAPVLDITTWTFPI 191

Query:   214 ESIPLNAYFTYL 225
              ++P+NAY +YL
Sbjct:   192 MALPINAYISYL 203

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

UNIPROTKB|F1SS45 COX10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 113/191 (59%), Positives = 138/191 (72%)

Query:    35 QYHEVPFDSQMSRTKNRVLVRGVLSPLHXXXXXXXXXXXXXXMLYFGVNGLTAALGLFNM 94
             Q+ EVPFDS M+RTKNR LVRG +SPL               +L +GVN LT ALG+FN+
Sbjct:     1 QFFEVPFDSNMNRTKNRPLVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGALGVFNI 60

Query:    95 VLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFP 154
              LYT  YTP+KR+SIANTWVG+VVGAIPP+MGW A TGSL     GA LL  IL++WQFP
Sbjct:    61 FLYTCCYTPLKRVSIANTWVGAVVGAIPPVMGWTAATGSL---DAGAILLGGILYSWQFP 117

Query:   155 HFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALE 214
             HFNALSW LR DYSR GY MM+VT+P LCR  +LR+ +AL+ +SAA P LDVT   F + 
Sbjct:   118 HFNALSWGLREDYSRGGYCMMSVTHPALCRRVALRHCLALIALSAAAPALDVTTWTFPVI 177

Query:   215 SIPLNAYFTYL 225
             ++P+N Y +YL
Sbjct:   178 ALPINLYISYL 188

GO:0048034 "heme O biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q48AB7	CYOE_COLP3	2, ., 5, ., 1, ., -	0.3583	0.7679	0.7679	yes	N/A
Q01YC2	COXX_SOLUE	2, ., 5, ., 1, ., -	0.3868	0.7712	0.8082	yes	N/A
A3NR29	COXX_BURP0	2, ., 5, ., 1, ., -	0.3320	0.8235	0.84	yes	N/A
Q5R460	COX10_PONAB	2, ., 5, ., 1, ., -	0.6224	0.7777	0.5372	yes	N/A
Q3J6R6	CYOE_NITOC	2, ., 5, ., 1, ., -	0.364	0.8006	0.8193	yes	N/A
Q3IJQ0	CYOE2_PSEHT	2, ., 5, ., 1, ., -	0.3877	0.7843	0.7766	yes	N/A
A1TWQ8	CYOE_MARAV	2, ., 5, ., 1, ., -	0.3568	0.8169	0.8278	yes	N/A
B0TNS4	CYOE_SHEHH	2, ., 5, ., 1, ., -	0.3401	0.7810	0.7940	yes	N/A
Q62F61	COXX_BURMA	2, ., 5, ., 1, ., -	0.3320	0.8235	0.84	yes	N/A
Q089F2	CYOE2_SHEFN	2, ., 5, ., 1, ., -	0.3333	0.7875	0.7953	yes	N/A
A1WBL5	COXX_ACISJ	2, ., 5, ., 1, ., -	0.3437	0.8137	0.8137	yes	N/A
Q82VQ6	COXX_NITEU	2, ., 5, ., 1, ., -	0.3436	0.8300	0.8523	yes	N/A
Q3JWF7	COXX_BURP1	2, ., 5, ., 1, ., -	0.3320	0.8235	0.84	yes	N/A
Q2SQU8	CYOE_HAHCH	2, ., 5, ., 1, ., -	0.3452	0.7941	0.8127	yes	N/A
Q0ADH9	COXX_NITEC	2, ., 5, ., 1, ., -	0.3320	0.8202	0.8422	yes	N/A
Q75F43	COX10_ASHGO	2, ., 5, ., 1, ., -	0.3809	0.8790	0.6183	yes	N/A
Q0VN94	CYOE_ALCBS	2, ., 5, ., 1, ., -	0.3574	0.7973	0.8052	yes	N/A
A1UZV8	COXX_BURMS	2, ., 5, ., 1, ., -	0.3320	0.8235	0.84	yes	N/A
B8GPF3	CYOE_THISH	2, ., 5, ., 1, ., -	0.3398	0.8202	0.8311	yes	N/A
Q9RM98	COXX_BRAJA	2, ., 5, ., 1, ., -	0.3632	0.8169	0.7961	yes	N/A
Q63XS7	COXX_BURPS	2, ., 5, ., 1, ., -	0.3320	0.8235	0.84	yes	N/A
Q2T1F6	COXX_BURTA	2, ., 5, ., 1, ., -	0.3320	0.8235	0.84	yes	N/A
A3MQ44	COXX_BURM7	2, ., 5, ., 1, ., -	0.3320	0.8235	0.84	yes	N/A
O64886	COX10_ARATH	2, ., 5, ., 1, ., -	0.3682	0.8692	0.6171	yes	N/A
A4VS42	CYOE_PSEU5	2, ., 5, ., 1, ., -	0.34	0.8006	0.8193	yes	N/A
B1Y6Q4	COXX_LEPCP	2, ., 5, ., 1, ., -	0.3774	0.8169	0.8196	yes	N/A
Q12887	COX10_HUMAN	2, ., 5, ., 1, ., -	0.6265	0.7777	0.5372	yes	N/A
Q9Y7Y4	COX10_SCHPO	2, ., 5, ., 1, ., -	0.4567	0.7875	0.6227	yes	N/A
A5FJD0	COXX_FLAJ1	2, ., 5, ., 1, ., -	0.3357	0.8267	0.8433	yes	N/A
A1SY55	CYOE_PSYIN	2, ., 5, ., 1, ., -	0.3577	0.7875	0.7749	yes	N/A
Q8CFY5	COX10_MOUSE	2, ., 5, ., 1, ., -	0.6099	0.7777	0.5372	yes	N/A
Q2S012	COXX_SALRD	2, ., 5, ., 1, ., -	0.3579	0.8104	0.8763	yes	N/A
Q15N01	CYOE2_PSEA6	2, ., 5, ., 1, ., -	0.3823	0.7614	0.7639	yes	N/A
Q5R0Y6	CYOE_IDILO	2, ., 5, ., 1, ., -	0.3666	0.7679	0.7885	yes	N/A
A3N5D1	COXX_BURP6	2, ., 5, ., 1, ., -	0.3320	0.8235	0.84	yes	N/A
A2S646	COXX_BURM9	2, ., 5, ., 1, ., -	0.3320	0.8235	0.84	yes	N/A
Q13CY5	COXX_RHOPS	2, ., 5, ., 1, ., -	0.3584	0.8366	0.8178	yes	N/A
C5BKU5	CYOE_TERTT	2, ., 5, ., 1, ., -	0.3464	0.8137	0.8006	yes	N/A
Q2IPE5	COXX_ANADE	2, ., 5, ., 1, ., -	0.3667	0.8333	0.8644	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	306
PLN02776	341	PLN02776, PLN02776, prenyltransferase	4e-85
TIGR01473	280	TIGR01473, cyoE_ctaB, protoheme IX farnesyltransfe	1e-83
COG0109	304	COG0109, CyoE, Polyprenyltransferase (cytochrome o	1e-72
PRK04375	296	PRK04375, PRK04375, protoheme IX farnesyltransfera	4e-63
PRK13362	306	PRK13362, PRK13362, protoheme IX farnesyltransfera	6e-46
PRK12869	279	PRK12869, ubiA, protoheme IX farnesyltransferase;	8e-23
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	7e-16
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-13
TIGR01474	281	TIGR01474, ubiA_proteo, 4-hydroxybenzoate polypren	6e-07
PLN02809	289	PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltr	1e-06
PRK12870	290	PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransf	2e-06
TIGR01475	282	TIGR01475, ubiA_other, putative 4-hydroxybenzoate	2e-06
PRK12878	314	PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransf	7e-06
PRK12848	282	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransf	1e-05
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	2e-04
PRK12847	285	PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransf	2e-04

>gnl|CDD|215415 PLN02776, PLN02776, prenyltransferase

 Score =  258 bits (662), Expect = 4e-85
 Identities = 114/266 (42%), Positives = 159/266 (59%), Gaps = 6/266 (2%)

Query: 2   AGYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSP 60
           AG+ +      +         GT L +++AN +NQ  EV  DS+M RT  R L  G +S 
Sbjct: 16  AGFVLGSGEAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75

Query: 61  LHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGA 120
            HA+ +A+   AAG A+L +  N LTA LG  N++LY  VYTP+K+I  ANTWVG+VVGA
Sbjct: 76  PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTPLKQIHPANTWVGAVVGA 135

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           IPPLMGWAA +G L     GA +L+A L+ WQ PHF AL++  R DY+  GYRM+++ + 
Sbjct: 136 IPPLMGWAAASGQL---DAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADA 192

Query: 181 DLCR--LTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS 238
              R  L +LR  + L  +        VT+  FALE+  L AY    A  FY+E  ++++
Sbjct: 193 TGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLTAYLAASAASFYREPTNANA 252

Query: 239 RKLFRFSLLHLPALMILLLINKKHWA 264
           RK+F  SLL+LPA M LLL+++    
Sbjct: 253 RKMFHGSLLYLPAFMALLLLHRVPND 278

Length = 341

>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase

 Score =  252 bits (647), Expect = 1e-83
 Identities = 115/265 (43%), Positives = 152/265 (57%), Gaps = 12/265 (4%)

Query: 2   AGYAMAPAPFE--WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLS 59
           AG  +AP          L+  LGT L +++ANA N Y +   D +M RT+NR LV G +S
Sbjct: 21  AGMWLAPGGALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRIS 80

Query: 60  PLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT-PMKRISIANTWVGSVV 118
           P  AL F L     G A+L   VN L A LGLF +  Y  VYT  +KR +  NT +G   
Sbjct: 81  PREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFA 140

Query: 119 GAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVT 178
           GA+PPL+GWAA TGS+   S GA+LL AI+F WQ PHF AL+   + DY  AG  M+ V 
Sbjct: 141 GAVPPLIGWAAVTGSI---SLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVV 197

Query: 179 NPDLCRLTSLR---YTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKES-D 234
             +  R+T  +   YT ALL VS     L  T   + + +  L A F YLA+KFY++  D
Sbjct: 198 KGE--RITKRQIALYTAALLPVSLLLAFLGGTGWLYLIVATLLGALFLYLAFKFYRDPTD 255

Query: 235 SSSSRKLFRFSLLHLPALMILLLIN 259
              +RKLF+FSL++L  L + LLI+
Sbjct: 256 RKKARKLFKFSLIYLALLFVALLID 280

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 280

>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

 Score =  225 bits (576), Expect = 1e-72
 Identities = 105/261 (40%), Positives = 143/261 (54%), Gaps = 6/261 (2%)

Query: 1   MAGYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLS 59
            AG  +AP         L+  LG  L +  A A N Y +   D+ M RT+ R LV G++S
Sbjct: 38  FAGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLIS 97

Query: 60  PLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVV 118
           P  AL F L    AG ++L+F VN L A LGLF +  Y  VYT  +KR +  N  +G   
Sbjct: 98  PREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFA 157

Query: 119 GAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVT 178
           GA+PPL+GWAA TGS+   S GA LL AI+F W  PHF AL+   + DY  AG  M+ V 
Sbjct: 158 GAMPPLIGWAAVTGSI---SLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVV 214

Query: 179 N-PDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSS 237
                 +   L YT+AL  VS    LL      + + +  L A+F  LA+K Y++ D   
Sbjct: 215 KGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKW 274

Query: 238 SRKLFRFSLLHLPALMILLLI 258
           +RKLF++S+++L  L + LLI
Sbjct: 275 ARKLFKYSIIYLALLFVALLI 295

Length = 304

>gnl|CDD|235293 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional

 Score =  201 bits (513), Expect = 4e-63
 Identities = 99/254 (38%), Positives = 139/254 (54%), Gaps = 5/254 (1%)

Query: 7   APAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGF 66
            P        L+  LG  LV+ AA A+N Y +   D++M RTKNR LV G +SP  AL F
Sbjct: 37  PPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIF 96

Query: 67  ALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLM 125
            L     G  +L   VN L A L L  +  Y  VYT  +KR +  N  +G   GA+PPL+
Sbjct: 97  GLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLI 156

Query: 126 GWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCR 184
           GWAA TGSL   S  A +L  I+F W  PHF AL+   + DY+ AG  M+ V     + +
Sbjct: 157 GWAAVTGSL---SWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTK 213

Query: 185 LTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRF 244
              L YTV L+ VS    LL +  + + + ++ L A+F Y A++ Y++ D   +RKLFR+
Sbjct: 214 RQILLYTVLLVAVSLLPVLLGMAGLLYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRY 273

Query: 245 SLLHLPALMILLLI 258
           S+ +L  L + LL+
Sbjct: 274 SINYLTLLFVALLV 287

Length = 296

>gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional

 Score =  157 bits (398), Expect = 6e-46
 Identities = 81/252 (32%), Positives = 131/252 (51%), Gaps = 7/252 (2%)

Query: 12  EWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASS 71
           +    L   +G  LV ++  A+N   +   D++M RT+NRV V G +S   ALGF LA  
Sbjct: 45  DPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALG 104

Query: 72  AAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAAC 130
            AG  +L    N L A    F  V+Y  VY+  +KR S+  T VGS+ GA+PP++G+ A 
Sbjct: 105 VAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCAV 164

Query: 131 TGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTN-PDLCRLTSLR 189
           TG       GA +L  +   WQ PH  A++     DY+ AG  ++ V       +L  + 
Sbjct: 165 TGQF---DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVL 221

Query: 190 YTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYK--ESDSSSSRKLFRFSLL 247
           Y +   +V+A  PL   T + +   +   + ++  +A K Y+    D+  +R+LF FS+L
Sbjct: 222 YILVFALVTALLPLAGYTGIGYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFSIL 281

Query: 248 HLPALMILLLIN 259
            + AL +++L++
Sbjct: 282 TITALSVMMLLD 293

Length = 306

>gnl|CDD|237239 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed

 Score = 95.2 bits (237), Expect = 8e-23
 Identities = 70/260 (26%), Positives = 107/260 (41%), Gaps = 8/260 (3%)

Query: 1   MAGYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLS 59
           +AGY +A      W   +   +G  L S  + A N   E   D  MSRT  R    G+++
Sbjct: 22  VAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVN 81

Query: 60  PLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPM-KRISIANTWVGSVV 118
              AL    A SA GTA+ +  +  LTA         Y  VYT   K  +  N  +G   
Sbjct: 82  RKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFA 141

Query: 119 GAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVT 178
           G    L G+A+ TGSL      A LLS +++ W   H  +L+   R DY RAG  M+   
Sbjct: 142 GNAAALAGYASGTGSL---DLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAV 198

Query: 179 NPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS 238
             +   + ++  + AL++       L    +   +    L+A     + +         +
Sbjct: 199 VGEKTSVRAISISNALMIPYILLLYLYYIGLIGLILVAILSAALMATSIRALLNPTKEEA 258

Query: 239 RKLFRFSLLHLPALMILLLI 258
            K+F+ S    P L + LL 
Sbjct: 259 WKMFKAS---SPYLALFLLA 275

Length = 279

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 75.6 bits (186), Expect = 7e-16
 Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 8/249 (3%)

Query: 4   YAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHA 63
              A    +    L+  L   L+ +A N +N Y +   D+      +R L  G +SP  A
Sbjct: 13  ALAAGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREA 72

Query: 64  LGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTP---MKRISIANTWVGSVVGA 120
           L   LA    G  +    +  L   LGL  ++L   +Y+P   +KR  +    V  +   
Sbjct: 73  LLLGLALLLLGLLLALL-LGPLLLLLGLLGLLLGL-LYSPPLRLKRRPLLGELVVGLAFG 130

Query: 121 IPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNP 180
           +  L+G  A  G   D      LL+  +F                   +AG R + V   
Sbjct: 131 LLILLGAYAVGG---DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLG 187

Query: 181 DLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK 240
               L      +A  ++     LL +  +   L  + L       A    + +    +R 
Sbjct: 188 RKRALALYALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEEPART 247

Query: 241 LFRFSLLHL 249
               +LL  
Sbjct: 248 FLFIALLFG 256

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 63/250 (25%), Positives = 95/250 (38%), Gaps = 10/250 (4%)

Query: 11  FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALAS 70
                 L+  L   L  SA   +N   +   D    RTKNR L  G +S   AL  A+  
Sbjct: 44  PSLKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILL 103

Query: 71  SAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRIS-IANTWVGSVVGAIPPLMGWAA 129
              G A+    +N L   L L  +VL    Y  +KR + +    +G   G +  L G AA
Sbjct: 104 LLLGLALALL-LNPLAFLLSLAALVL-ALAYPFLKRFTFLPQLVLGLAFG-LGALAGAAA 160

Query: 130 CTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVT-NPDLCRLTSL 188
             GSL        LL+AIL+T  +    A+         +AG + + V          +L
Sbjct: 161 VGGSLP-LLAWLLLLAAILWTLGYDIIYAIQ--DIEGDRKAGLKSLPVLFGIKKALALAL 217

Query: 189 RYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLH 248
              +A  ++   G L  +  + + L  +       Y         D  +   LF  +LL 
Sbjct: 218 LLLLASALLVLLGLLAGLLGLIYLLGLLVAALLLLYQILI-VDVRDPPACFALFDVNLL- 275

Query: 249 LPALMILLLI 258
           L  L+ + LI
Sbjct: 276 LGLLLFIGLI 285

Length = 289

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 16/123 (13%)

Query: 21  LGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF 80
           +G  L+  A   +N   +  FD Q+ RTK+R L  G +S   A+ F L        +L  
Sbjct: 47  VGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVL-L 105

Query: 81  GVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVV-------GAIPPLMGWAACTGS 133
            +N LT  LG+ ++ L  + Y  MKRI    T+   +V       GA   LMGWAA TG 
Sbjct: 106 QLNPLTILLGVASLAL-VATYPFMKRI----TYWPQLVLGLAFGWGA---LMGWAAVTGD 157

Query: 134 LLD 136
           L  
Sbjct: 158 LST 160

This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 281

>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 11/136 (8%)

Query: 5   AMAPAPFEWSSFLICSL-GTG--LVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
           A+A  P       + +L G G  L+  A   +N   +   D ++ RTK R +  G L+P 
Sbjct: 33  ALAAPPGSLPDLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPF 92

Query: 62  HALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAI 121
             +GF  A    G  +L   +N  +  LG  +++L  + Y  MKR +    W  + +G  
Sbjct: 93  QGVGFLGAQLLLGLGIL-LQLNNYSRILGASSLLLVFT-YPLMKRFT---FWPQAFLGLT 147

Query: 122 ---PPLMGWAACTGSL 134
                L+GWAA  GSL
Sbjct: 148 FNWGALLGWAAVKGSL 163

Length = 289

>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 13  WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSA 72
                I  LG    S+A   VN   +   D Q+ RT+ R L    LS    +  A+ +  
Sbjct: 45  LPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALL 104

Query: 73  AGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTG 132
               + +F +N L+  L +   V    +Y   KR+      V ++      L+ W+A TG
Sbjct: 105 CAAGLAFF-LNPLSFWLCV-AAVPVIFLYPLAKRVFPVPQLVLAIAWGFAVLISWSAVTG 162

Query: 133 SLLDGSGGAFLLSAILFTWQ 152
            L     G +LL A    W 
Sbjct: 163 HL---DLGTWLLWAATVFWT 179

Length = 290

>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 17/138 (12%)

Query: 10  PFEWSSFLICSLG-----------TGLVS--SAANAVNQYHEVPFDSQMSRTKNRVLVRG 56
           PF ++  L+ + G              VS  +AA A N+  +   D++  RTKNR LV G
Sbjct: 19  PFAYAGALLAAKGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSG 78

Query: 57  VLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRIS-IANTWVG 115
           ++S   A    + S A   +  YF +N L   L    ++L   +Y   KR + + +  +G
Sbjct: 79  LISKKEARTMIILSLALFLSASYF-LNPLAFIL-SPLVLLVLIIYPYTKRFTFLCHYVLG 136

Query: 116 SVVGAIPPLMGWAACTGS 133
           S  G   PL GW A  G+
Sbjct: 137 STYGLA-PLAGWVAVIGT 153

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 282

>gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 21/158 (13%)

Query: 2   AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPL 61
           AG A            +  +G   +  A    N   +   D++++RT++R L  G +S  
Sbjct: 60  AGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRK 119

Query: 62  HALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRIS--------IANTW 113
            A  F +  +  G A+L    N    ALG+ ++ +  + Y  MKRI+        +A +W
Sbjct: 120 QAKVFMVLQALVGLAVL-LQFNWFAIALGIASLAI-VAAYPFMKRITWWPQFFLGLAFSW 177

Query: 114 VGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTW 151
                GA   LMGWAA  GSL   S  A LL A    W
Sbjct: 178 -----GA---LMGWAAHFGSL---SLAAVLLYAGSIAW 204

Length = 314

>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 18/131 (13%)

Query: 12  EWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASS 71
           +    ++  LG  L+ +A   +N Y +  FD  + RTKNR L  G +S   AL   +   
Sbjct: 40  DLWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLV 99

Query: 72  AAGTAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRIS--------IANTWVGSVVGAIPP 123
                +L   +N LT  L +  + L   +Y  MKR +         A  W       IP 
Sbjct: 100 LV-AFLLVLTLNTLTIWLSVAALAL-AWIYPFMKRYTHLPQVVLGAAFGW------GIP- 150

Query: 124 LMGWAACTGSL 134
            M +AA  GS+
Sbjct: 151 -MAFAAVQGSV 160

Length = 282

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 20/127 (15%)

Query: 2   AGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTK--NRVLVRGVLS 59
           AG  ++       +F        L + A NA+N Y    FD ++ R    +R +  G +S
Sbjct: 30  AGGILSSPSLTGLAFAA----VFLATGAGNAINDY----FDREIDRINRPDRPIPSGAVS 81

Query: 60  PLHALGFALASSAAGTAMLYFGVNGLTAALGLFN---MVLYTSVY--TPMKRISIANTWV 114
           P  AL F++   AAG A L F +  L  A+ LFN   +VLY      TP     + N  V
Sbjct: 82  PRGALAFSILLFAAGVA-LAFLLPPLCLAIALFNSLLLVLYAETLKGTPG----LGNASV 136

Query: 115 GSVVGAI 121
             + G+ 
Sbjct: 137 AYLTGST 143

Length = 276

>gnl|CDD|237228 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 2/120 (1%)

Query: 15  SFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAG 74
             ++  +G+ L+ SA   +N   +   D  ++RTKNR L  G LS   AL          
Sbjct: 46  LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIA 105

Query: 75  TAMLYFGVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSL 134
             +L   +N  T  L    ++L   +Y  MKR              +  LM +AA    L
Sbjct: 106 LVILLL-LNKTTIYLSFIAVIL-IVLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQL 163

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	306
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	100.0
PLN02776	341	prenyltransferase	100.0
KOG1380|consensus	409		100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
KOG1381|consensus	353		100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK12871	297	ubiA prenyltransferase; Reviewed	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.97
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.97
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.97
PRK05951	296	ubiA prenyltransferase; Reviewed	99.96
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.96
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	99.96
PRK12872	285	ubiA prenyltransferase; Reviewed	99.95
PRK13592	299	ubiA prenyltransferase; Provisional	99.95
PRK13595	292	ubiA prenyltransferase; Provisional	99.94
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.93
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.93
PLN02878	280	homogentisate phytyltransferase	99.91
PRK13105	282	ubiA prenyltransferase; Reviewed	99.91
PRK08238	479	hypothetical protein; Validated	99.9
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.89
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.89
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.89
PLN02922	315	prenyltransferase	99.88
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.88
PRK12875	282	ubiA prenyltransferase; Reviewed	99.88
PRK13591	307	ubiA prenyltransferase; Provisional	99.85
KOG4581|consensus	359		99.49
PRK12884	279	ubiA prenyltransferase; Reviewed	95.27
PRK12875	282	ubiA prenyltransferase; Reviewed	94.95
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	94.67
PRK12882	276	ubiA prenyltransferase; Reviewed	92.61
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	92.22
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	91.76
PRK13592	299	ubiA prenyltransferase; Provisional	91.31
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	91.22
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	90.76
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	89.84
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	89.74
PRK12872	285	ubiA prenyltransferase; Reviewed	89.16
PRK12874	291	ubiA prenyltransferase; Reviewed	88.32
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	88.26
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	87.31
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	87.22
PRK13362	306	protoheme IX farnesyltransferase; Provisional	86.79
PRK04375	296	protoheme IX farnesyltransferase; Provisional	86.01
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	85.85
PRK12871	297	ubiA prenyltransferase; Reviewed	85.67
PRK12888	284	ubiA prenyltransferase; Reviewed	85.43
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	85.32
PLN00012	375	chlorophyll synthetase; Provisional	84.85
PRK13105	282	ubiA prenyltransferase; Reviewed	84.75
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	84.33
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	84.06
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	83.51
PRK13591	307	ubiA prenyltransferase; Provisional	83.13
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	83.05
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	81.38
PLN02922	315	prenyltransferase	80.82
PRK13595	292	ubiA prenyltransferase; Provisional	80.68
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	80.6
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	80.09

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.1e-57  Score=415.87  Aligned_cols=257  Identities=40%  Similarity=0.639  Sum_probs=246.3

Q ss_pred             eEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13659          2 AGYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF   80 (306)
Q Consensus         2 ~G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~   80 (306)
                      +|+++|+ +..++..++...+|+.++.+++|++|+++|||+|++|+||++||+|+|+|+|+||+.++.++.++|+.++++
T Consensus        39 ~g~~lA~~~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~  118 (304)
T COG0109          39 AGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWF  118 (304)
T ss_pred             HHHHHcccccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            5788887 678999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCC-CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659         81 GVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL  159 (306)
Q Consensus        81 ~l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~  159 (306)
                      ..|+.+..+++.+++.|.++||. +||+|++|+++|++.|++|+++||+|++|+++   +.++++++++|+||++|+|++
T Consensus       119 ~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaAvtg~~~---~~a~~Lf~IiF~WtPpHfwAL  195 (304)
T COG0109         119 LVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSIS---LGAILLFAIIFLWTPPHFWAL  195 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeeeeeCCCC---chHHHHHHHHHHhccHHHHHH
Confidence            89999999999999999999999 99999999999999999999999999999999   899999999999999999999


Q ss_pred             hhhcchhHHHcCCccccccCCch-hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659        160 SWNLRPDYSRAGYRMMAVTNPDL-CRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS  238 (306)
Q Consensus       160 a~~D~edD~~~G~~tl~v~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~  238 (306)
                      +++.+|||+++|++|+|++.|++ +++.+..|++.+.++++++.+.|..++.|.+++.++++++++.++++++++|++++
T Consensus       196 Al~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A  275 (304)
T COG0109         196 ALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWA  275 (304)
T ss_pred             HHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence            99999999999999999999984 77789999999999999888888889999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHhcc
Q psy13659        239 RKLFRFSLLHLPALMILLLINKK  261 (306)
Q Consensus       239 ~~~F~~s~~~~~~l~~~~l~~~~  261 (306)
                      ||+|+.|+.|+.++|+.+++|+.
T Consensus       276 ~klF~~S~~yL~~lf~~l~id~~  298 (304)
T COG0109         276 RKLFKYSIIYLALLFVALLIDSL  298 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875

>PLN02776 prenyltransferase

Probab=100.00  E-value=2.6e-55  Score=414.77  Aligned_cols=260  Identities=43%  Similarity=0.662  Sum_probs=240.4

Q ss_pred             eEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13659          2 AGYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF   80 (306)
Q Consensus         2 ~G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~   80 (306)
                      +|+++|. +.+++..+++..+|++++++++|++||++|+|+|++|+||++||+|+|++|+++|+.+++++.++|+.++.+
T Consensus        16 ~G~~lA~~~~~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g~~~l~~   95 (341)
T PLN02776         16 AGFVLGSGEAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAGVALLAY   95 (341)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4677775 457888889999999999999999999999999999999999999999999999999999999999976655


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659         81 GVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS  160 (306)
Q Consensus        81 ~l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a  160 (306)
                      ++|+.++.+++.++++|.++||++||++++|+++|++.|++|+++||.|++|+++   +.+++++..+++||++||+.++
T Consensus        96 ~~n~l~~~l~~~~~~ly~~vYt~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~---~~~~~Lf~~~~~Wq~pHf~~la  172 (341)
T PLN02776         96 KTNMLTAGLGAGNILLYAFVYTPLKQIHPANTWVGAVVGAIPPLMGWAAASGQLD---AGAMVLAAALYFWQMPHFMALA  172 (341)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhHccCCchhHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999998   8999999999999999999999


Q ss_pred             hhcchhHHHcCCccccccC--CchhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659        161 WNLRPDYSRAGYRMMAVTN--PDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS  238 (306)
Q Consensus       161 ~~D~edD~~~G~~tl~v~~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~  238 (306)
                      ++|+|||+++|+||+|+..  |+++++.+..|+..+.+++++++..|..+++|.+.++++++.+++.++++++++|++++
T Consensus       173 ~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~~~~~a~~l~~~~l~~~~~~~~~~~~~~a  252 (341)
T PLN02776        173 YMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLTAYLAASAASFYREPTNANA  252 (341)
T ss_pred             HHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence            9999999999999999976  46777788889988888888888888888888888888999999999999998889999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHhccccc
Q psy13659        239 RKLFRFSLLHLPALMILLLINKKHWA  264 (306)
Q Consensus       239 ~~~F~~s~~~~~~l~~~~l~~~~~~~  264 (306)
                      ||.|+.|++|++++++.+++|++.|.
T Consensus       253 r~~F~~Sl~yL~~l~~~~~~~~~~~~  278 (341)
T PLN02776        253 RKMFHGSLLYLPAFMALLLLHRVPND  278 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999997664

>KOG1380|consensus

Probab=100.00  E-value=3.5e-55  Score=401.00  Aligned_cols=274  Identities=60%  Similarity=1.028  Sum_probs=260.1

Q ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13659          1 MAGYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF   80 (306)
Q Consensus         1 ~~G~~la~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~   80 (306)
                      |.||+++|+++++..++.+.+|+.++++++|++||++|...|+||+||++||+|+|+|||.+|+.|+.+....|+.++++
T Consensus       114 ~~gYalap~p~s~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~isp~hA~~fAt~~g~~G~slL~~  193 (409)
T KOG1380|consen  114 MTGYALAPGPFSFPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAF  193 (409)
T ss_pred             cccccccccCCCcchhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccChHHHHHHHHHhccccceeeee
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659         81 GVNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS  160 (306)
Q Consensus        81 ~l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a  160 (306)
                      ..|+.+..+|..++++|..+||.+||+.+.|+|+|.++|++||++||+|++|.++   +..|++..++|.||+|||+.++
T Consensus       194 gvNpl~a~Lga~Ni~LY~~vYTPlKrihiinTWvGavVGAIPPLMGwAAasg~l~---~ga~iLa~~LyaWQfPHFnaLS  270 (409)
T KOG1380|consen  194 GVNPLAAALGAGNIFLYAGVYTPLKRIHIINTWVGAVVGAIPPLMGWAAASGLLD---PGAMILAGILYAWQFPHFNALS  270 (409)
T ss_pred             cccHHHHHHhhcchheeeccccchhhhhhhhhHHHHHhccCCccchhhhhccCCC---ccHHHHHHHHHHhcccchhhhh
Confidence            7999999999999999999999999999999999999999999999999999998   8899999999999999999999


Q ss_pred             hhcchhHHHcCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHH
Q psy13659        161 WNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRK  240 (306)
Q Consensus       161 ~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  240 (306)
                      +.-|+||.++|++|+++....-++++.++|.+++.+++......+.++|+|.+-++++++++.+.++++++++|.+++||
T Consensus       271 ~~lR~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~~~~~~~lT~~wf~i~s~~~na~l~~~afkFY~~~d~~~aRk  350 (409)
T KOG1380|consen  271 WNLRNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSYAAPSTDLTTWWFAIESLPLNAYLAYLAFKFYRDRDYHNARK  350 (409)
T ss_pred             hhhchhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhccccccCcccceeeeccccHhHHHHHHHHHHhhccchhhHHH
Confidence            99999999999999999998877888999999999998888888999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHhccccccCCCCcccccccc
Q psy13659        241 LFRFSLLHLPALMILLLINKKHWASHGSDAAKDSIEV  277 (306)
Q Consensus       241 ~F~~s~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~  277 (306)
                      +|+.|.+++|+++.++++++.+|.+.++|-+++.+++
T Consensus       351 lF~aSLlhLP~lmll~l~~k~~~~~qq~~~~~~~l~~  387 (409)
T KOG1380|consen  351 LFFASLLHLPLLMLLMLIHKKGRDNQQPDGEEPGLTN  387 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccCcccccCcccc
Confidence            9999999999999999999998877666665555543

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=4.1e-50  Score=377.16  Aligned_cols=256  Identities=32%  Similarity=0.506  Sum_probs=229.9

Q ss_pred             eEEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13659          2 AGYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF   80 (306)
Q Consensus         2 ~G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~   80 (306)
                      +|++++. +.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|||++|+++|+.++.++..+|+.++..
T Consensus        34 ~G~~la~~~~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~  113 (306)
T PRK13362         34 GGFFLASKGHVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLAA  113 (306)
T ss_pred             HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3555663 567887777888899999999999999999999999999999999999999999999999999999987755


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCC-CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659         81 GVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL  159 (306)
Q Consensus        81 ~l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~  159 (306)
                      +.|+.+..++.++.+.|.++||. +||+++++.++|++.|++|+++||++++|+++   +..++++...++||.+||+++
T Consensus       114 ~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~g~~~---~~~~~l~~~~~~W~~~h~~~~  190 (306)
T PRK13362        114 FTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQFD---AGALILLLMFSLWQMPHSYAI  190 (306)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHH
Confidence            67998887888888878899996 99999998778888889999999999999998   889999999999999999999


Q ss_pred             hhhcchhHHHcCCccccccCCch-hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc--CChH
Q psy13659        160 SWNLRPDYSRAGYRMMAVTNPDL-CRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKE--SDSS  236 (306)
Q Consensus       160 a~~D~edD~~~G~~tl~v~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~--~~~~  236 (306)
                      +++|+|||+++|+||+|+++|++ ++..+..|.++.+.++++++..|..++.|...+++.++.+++.+++++++  ++++
T Consensus       191 ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~l~~~~g~~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~  270 (306)
T PRK13362        191 AIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTALLPLAGYTGIGYLAVAAATSLWWLAMALKGYRHAVDDTV  270 (306)
T ss_pred             HHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Confidence            99999999999999999999985 45567788888888888988888889999988888899999999999874  4557


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhc
Q psy13659        237 SSRKLFRFSLLHLPALMILLLINK  260 (306)
Q Consensus       237 ~~~~~F~~s~~~~~~l~~~~l~~~  260 (306)
                      ++||+|+.|++|++++++.+++|+
T Consensus       271 ~a~~~f~~S~~yl~~~~~~~~~~~  294 (306)
T PRK13362        271 WARQLFGFSILTITALSVMMLLDF  294 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999975

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=7.3e-49  Score=367.66  Aligned_cols=256  Identities=39%  Similarity=0.588  Sum_probs=227.0

Q ss_pred             EEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659          3 GYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG   81 (306)
Q Consensus         3 G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~   81 (306)
                      |++++. +.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|+|++|++||+.++..+..+|+.++++.
T Consensus        32 G~~la~~~~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l  111 (296)
T PRK04375         32 GMLLAPPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLLLGLF  111 (296)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            556664 4578888889999999999999999999999999999999999999999999999999999999999887555


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCC-CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659         82 VNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS  160 (306)
Q Consensus        82 l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a  160 (306)
                      .|+.+..+++++++.|..+||. +||++++|+++|.+.|++|+++||++++|+++   +.++++++..++||.+|++.++
T Consensus       112 ~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~---~~~~~l~~~~~lw~~~~~~~~~  188 (296)
T PRK04375        112 VNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAVTGSLS---WEALILFLIIFLWTPPHFWALA  188 (296)
T ss_pred             HhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHhCCCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence            6888888888887766889999 99999889999988899999999999999988   8889999999999999999999


Q ss_pred             hhcchhHHHcCCccccccCCchh-HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q psy13659        161 WNLRPDYSRAGYRMMAVTNPDLC-RLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSR  239 (306)
Q Consensus       161 ~~D~edD~~~G~~tl~v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~  239 (306)
                      ++|+|||+++|+||+|+++|+++ +..+..+.+..+.++++++..+..++.|.+.+++.++.+++.++++.+++++++|+
T Consensus       189 ~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~  268 (296)
T PRK04375        189 IFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGLLYLVVALLLGAWFLYYAWRLYRKDDRKWAR  268 (296)
T ss_pred             HHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHH
Confidence            99999999999999999999864 34566677777767777777776788887766677888899999999988899999


Q ss_pred             HHHHHHhHHHHHHHHHHHHhcc
Q psy13659        240 KLFRFSLLHLPALMILLLINKK  261 (306)
Q Consensus       240 ~~F~~s~~~~~~l~~~~l~~~~  261 (306)
                      |.|+.++++++++++++++++.
T Consensus       269 ~~F~~s~~~~~~i~~~~~~~~~  290 (296)
T PRK04375        269 KLFRYSINYLTLLFVALLVDHL  290 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=2.8e-48  Score=360.94  Aligned_cols=254  Identities=44%  Similarity=0.662  Sum_probs=223.5

Q ss_pred             EEEecCCC--CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13659          3 GYAMAPAP--FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF   80 (306)
Q Consensus         3 G~~la~g~--~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~   80 (306)
                      |++++.+.  +++..+++++++++++++++|++|||+|+|+|++|+||++||+|||++|+++|..++.++.++|+.++..
T Consensus        22 g~~la~~~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~~il~~  101 (280)
T TIGR01473        22 GMWLAPGGALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVAILAA  101 (280)
T ss_pred             HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            45566432  6888889999999999999999999999999999999999999999999999999999999999986555


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCC-CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659         81 GVNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL  159 (306)
Q Consensus        81 ~l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~  159 (306)
                      ..|+.+..++++++++|.++||. +||++++|+++|.+.|++++++||++++|+++   +..++++...++||.+|++.+
T Consensus       102 ~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~---~~~~~l~~~~~~w~~~~~~~~  178 (280)
T TIGR01473       102 FVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSIS---LGAWLLFAIIFLWQPPHFWAL  178 (280)
T ss_pred             HHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHH
Confidence            58998888888888777889995 99999999989889999999999999999998   888889999999999999999


Q ss_pred             hhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC-ChHH
Q psy13659        160 SWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKES-DSSS  237 (306)
Q Consensus       160 a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~-~~~~  237 (306)
                      +++|+|||+++|+||+|+++|++++. .+..+.+.++.++.+++..+..++.|.+.+++.+..+++.++++++++ ++++
T Consensus       179 a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~  258 (280)
T TIGR01473       179 ALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGWLYLIVATLLGALFLYLAFKFYRDPTDRKK  258 (280)
T ss_pred             HHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence            99999999999999999999986544 455566666667777776776788888777777888899999999877 7789


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHh
Q psy13659        238 SRKLFRFSLLHLPALMILLLIN  259 (306)
Q Consensus       238 ~~~~F~~s~~~~~~l~~~~l~~  259 (306)
                      |+|.|+.|++|+++++..+++|
T Consensus       259 ~~~~f~~s~~~~~~~~~~~~~~  280 (280)
T TIGR01473       259 ARKLFKFSLIYLALLFVALLID  280 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999888764

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=8e-48  Score=357.84  Aligned_cols=252  Identities=26%  Similarity=0.310  Sum_probs=216.5

Q ss_pred             EEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659          3 GYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG   81 (306)
Q Consensus         3 G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~   81 (306)
                      |++++. +.+++..+++.+++++++++++|++|||+|||+|++|+||++||+|+|++|++||..++..+.++|+.+++++
T Consensus        24 g~~la~~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~~  103 (279)
T PRK12869         24 GYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFLL  103 (279)
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            555664 4578888888999999999999999999999999999999999999999999999999999999999988644


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCC-CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659         82 VNGLTAALGLFNMVLYTSVYTP-MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS  160 (306)
Q Consensus        82 l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a  160 (306)
                      +|+.+..+..++.+.|..+||. +||++++|+++|.+.|++++++||++++|+++   +..++++...++|+.+|+++++
T Consensus       104 l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~---~~~~ll~~~~~~w~~~~~~~l~  180 (279)
T PRK12869        104 LGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTGSLD---LEAVLLSFLIYLWTPGHIWSLA  180 (279)
T ss_pred             HHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888755545555566889998 99999999999999999999999999999988   8889999999999999999999


Q ss_pred             hhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q psy13659        161 WNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSR  239 (306)
Q Consensus       161 ~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~  239 (306)
                      ++|+|||+++|+||+|+++|++++. .+..+.+..+.++.+++. +..++.|.+..++.++.+++.+.++++++++++|+
T Consensus       181 ~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~  259 (279)
T PRK12869        181 LKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGLIGLILVAILSAALMATSIRALLNPTKEEAW  259 (279)
T ss_pred             HHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHhhCCChHHHH
Confidence            9999999999999999999986443 444444444444444444 45688888777777888888998899888899999


Q ss_pred             HHHHHHhHHHHHHHHHHHH
Q psy13659        240 KLFRFSLLHLPALMILLLI  258 (306)
Q Consensus       240 ~~F~~s~~~~~~l~~~~l~  258 (306)
                      |.|+.|++|++++++.+++
T Consensus       260 ~~f~~s~~~l~~~~~~~~~  278 (279)
T PRK12869        260 KMFKASSPYLALFLLALII  278 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999988765

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.2e-47  Score=355.59  Aligned_cols=252  Identities=19%  Similarity=0.183  Sum_probs=208.3

Q ss_pred             EEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659          3 GYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG   81 (306)
Q Consensus         3 G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~   81 (306)
                      |+++++ +.+++..+++++++++++++++|++||++|||+|++|+||++||+|+|++|+++|+.++.++..+++.+++..
T Consensus        32 g~~la~~~~~~~~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l  111 (294)
T PRK12873         32 SLWLTPSAPPSLLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSL  111 (294)
T ss_pred             HHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            344554 3477888899999999999999999999999999999999999999999999999999999999999887533


Q ss_pred             ---hHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcch--HHHHHHHHHHHhHhHHH
Q psy13659         82 ---VNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSG--GAFLLSAILFTWQFPHF  156 (306)
Q Consensus        82 ---l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~--~~~~l~~~~~~w~~~~~  156 (306)
                         .|+.+..+++.+++. ..+||++||+|.++++++.+.+++|+++||.|++|+++   +  ..+++++..++||.+||
T Consensus       112 ~~~~n~l~~~l~~~~~~~-~~~Y~~~KR~t~~~~~vlg~~~a~~~l~gw~Av~g~~~---~~~~~l~l~~~~~~W~~~~d  187 (294)
T PRK12873        112 PQPSRNLCLSLAFLALPP-ILIYPSAKRWFAYPQAILALCWGFAVLIPWAAAEGSLN---GGWPLLFCWLATLLWTFGFD  187 (294)
T ss_pred             hcchhHHHHHHHHHHHHH-HHHHHHHHhccccchHHHHHHHHhHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHHHHHH
Confidence               378888888888875 89999999999996555555568999999999999988   5  33445688999999999


Q ss_pred             HHhhhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCC-
Q psy13659        157 NALSWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESD-  234 (306)
Q Consensus       157 ~~~a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~-  234 (306)
                      +.|++||+|||+++|+||+|+++|+++.+ ....|.+..+.+..+++..+. ++.|.+... .....+.++++..+.++ 
T Consensus       188 ~iyA~qD~edD~~~Gv~slpv~~G~~~~~~~~~~~~~~~~ll~~~g~~~~l-~~~y~~~~~-~~~~~l~~~~~~~~~~~~  265 (294)
T PRK12873        188 TVYAMADRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIFLALAAFIAQV-GFIFWPFWL-IASIGMQRDILKLFPEKQ  265 (294)
T ss_pred             HHHHHHhHhhHHHcCCcccchhcChhhHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHH-HHHHHHHHHHHHhCcCcc
Confidence            99999999999999999999999986544 345666666666666777665 555554333 33455666777887665 


Q ss_pred             -hHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy13659        235 -SSSSRKLFRFSLLHLPALMILLLINK  260 (306)
Q Consensus       235 -~~~~~~~F~~s~~~~~~l~~~~l~~~  260 (306)
                       +++|.+.|+.|.+.+.+++.++++++
T Consensus       266 ~~~~c~~~F~~n~~~G~~i~~g~~~~~  292 (294)
T PRK12873        266 SIKTIGNHFSNQVILGSLLLLGLILAR  292 (294)
T ss_pred             cHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence             59999999999999999999998865

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.3e-46  Score=351.60  Aligned_cols=253  Identities=17%  Similarity=0.112  Sum_probs=209.6

Q ss_pred             EEEec-CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659          3 GYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG   81 (306)
Q Consensus         3 G~~la-~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~   81 (306)
                      |+++| ++.+++..+++..++++++++++|++|||+|||+|++|+||++||+|+|++|++||..+...+.+.++.+. ..
T Consensus        30 g~~lA~~~~~~~~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~l~-~~  108 (291)
T PRK12886         30 GAVLAALGLPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLSSLLMLFAA-WF  108 (291)
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH-HH
Confidence            55566 35578888889999999999999999999999999999999999999999999999999766665555554 46


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhh
Q psy13659         82 VNGLTAALGLFNMVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSW  161 (306)
Q Consensus        82 l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~  161 (306)
                      .|+.++.+++.+++. ..+||++||++.++.+++++.+++++++||.+++|+++   +.++++++..++||.+|++.+++
T Consensus       109 ~~~~~~~l~~~~~~~-~~~Y~~~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g~~~---~~~~ll~~~~~lw~~~~~~~~a~  184 (291)
T PRK12886        109 LNPLCLYLSPPALFF-LLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIRGTIE---LPAILLGLAVLFWVAGFDILYAL  184 (291)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhhhhccccccHHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHh
Confidence            899998888888877 88999999999995544444467999999999999988   88899999999999999999999


Q ss_pred             hcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCC-hHHHH
Q psy13659        162 NLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESD-SSSSR  239 (306)
Q Consensus       162 ~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~-~~~~~  239 (306)
                      +|+|||+++|+||+|+++|++++. ....+......++.++.+.+..++.|.+.+++.++.++ ++++..+++| +++|+
T Consensus       185 ~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l-~~~~~~~~~~~~~~~~  263 (291)
T PRK12886        185 QDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGPWFLAGLAVTGILLL-YEHWLLRGGDLTRLDA  263 (291)
T ss_pred             ccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHH
Confidence            999999999999999999987544 33345455555556666556567888777777777777 4777888777 46899


Q ss_pred             HHHHHHhHHHHHHHHHHHHhcc
Q psy13659        240 KLFRFSLLHLPALMILLLINKK  261 (306)
Q Consensus       240 ~~F~~s~~~~~~l~~~~l~~~~  261 (306)
                      +.|+.|.+++.++++++++|+.
T Consensus       264 ~~F~~~~~~~~~l~~~~~~~~~  285 (291)
T PRK12886        264 AFFNMNGYISVTLFAATLFDRL  285 (291)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHH
Confidence            9999999988899999998754

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.4e-46  Score=349.72  Aligned_cols=252  Identities=14%  Similarity=0.146  Sum_probs=205.8

Q ss_pred             EEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659          3 GYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG   81 (306)
Q Consensus         3 G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~   81 (306)
                      |+++|. +.+++..+++.+++++++++++|++||++|||+|++|+||++||+|||++|++||+.++.+++++++.+++ +
T Consensus        25 g~~lA~~~~~~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~~~-~  103 (286)
T PRK12895         25 GYVIAAGHYIHPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTF-L  103 (286)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-H
Confidence            556664 44677777788889999999999999999999999999999999999999999999999999999988774 6


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659         82 VNGLTAALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS  160 (306)
Q Consensus        82 l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a  160 (306)
                      +|+.++.++...+.+ ...|+++||+|++ |+++|...| +++++||.|++|+++.. ..++++++..++|+..+|+.|+
T Consensus       104 ln~l~~~l~~~~~~l-~~~yp~~KR~t~~~~~~lG~~~g-~~~l~g~~Av~g~~~~~-~~~~~l~~~~~~W~~g~D~iYa  180 (286)
T PRK12895        104 LNRLVFILSPIVIFL-FIIDPFLKRYTAWRHIYMGSIIG-LGVLAGYLAVIPAFPYN-LLIYIIFISSSLWIAGFDIIYV  180 (286)
T ss_pred             HhHHHHHHHHHHHHH-HHHHHHHHhCccccHHHHHHHHH-hHHHHHHHHHcCCCCch-HHHHHHHHHHHHHHHHHHHHHH
Confidence            899998888877766 5677789999999 789999997 89999999999987611 2356788999999999999999


Q ss_pred             hhcchhHHHcCCccccccCCchhHHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659        161 WNLRPDYSRAGYRMMAVTNPDLCRLTS--LRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS  238 (306)
Q Consensus       161 ~~D~edD~~~G~~tl~v~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~  238 (306)
                      +||+|||++.|+||+|+++|++++..+  ..+.+........++..+  +++|.+. +......+.++++..+.+|+++|
T Consensus       181 ~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~--~~~y~~~-~~~~~~~l~~q~~~~~~~~~~~~  257 (286)
T PRK12895        181 IPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR--TLWYLAA-LIIIYTLVIYQHLIIDPRNPINK  257 (286)
T ss_pred             hcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHH-HHHHHHHHHHHHHHhcCCCHHHH
Confidence            999999999999999999999765432  344444443333333333  5556543 33445566677788888889999


Q ss_pred             -HHHHHHHhHHHHHHHHHHHHhcc
Q psy13659        239 -RKLFRFSLLHLPALMILLLINKK  261 (306)
Q Consensus       239 -~~~F~~s~~~~~~l~~~~l~~~~  261 (306)
                       ++.|+.|.+++.+++++++++..
T Consensus       258 ~~~~F~~N~~ig~~~~~~~~~~~~  281 (286)
T PRK12895        258 RMSFFNANSFIGFVFLIGIILSLR  281 (286)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHhc
Confidence             66799999999999999888764

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=5.1e-46  Score=346.25  Aligned_cols=249  Identities=22%  Similarity=0.236  Sum_probs=211.5

Q ss_pred             EEEec-CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659          3 GYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG   81 (306)
Q Consensus         3 G~~la-~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~   81 (306)
                      |++++ ++.+++..+++.+++.+++++++|++|||+|+|+|++|+||++||+|||++|+++|+.++..+..+++.+++ .
T Consensus        30 g~~la~~~~~~~~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~-~  108 (282)
T PRK12848         30 ALWLAADGIPDLWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVL-T  108 (282)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-H
Confidence            44455 355777778888899999999999999999999999999999999999999999999999999999998774 6


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659         82 VNGLTAALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS  160 (306)
Q Consensus        82 l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a  160 (306)
                      +|+.++.+++.+++. ..+||++||++.+ ++++|... ++++++||.+++++++   +.++++++..++||.+|++.|+
T Consensus       109 l~~~~~~l~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~~-g~~~~~g~~a~~~~~~---~~~~~l~~~~~~w~~~~~~~~a  183 (282)
T PRK12848        109 LNTLTIWLSVAALAL-AWIYPFMKRYTHLPQVVLGAAF-GWGIPMAFAAVQGSVP---LEAWLLFLANILWTVAYDTQYA  183 (282)
T ss_pred             HhHHHHHHHHHHHHH-HHHHHhHHhcCcccHHHHHHHH-HHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHHHH
Confidence            899998888888888 8899989999999 66667776 4788999999999988   8889999999999999999999


Q ss_pred             hhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q psy13659        161 WNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSR  239 (306)
Q Consensus       161 ~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~  239 (306)
                      +||+|||+++|+||+|+++|++++. ....+.+..+.++.++++.+. ++.|.+...+.++.+.+. ++..+.+++++|+
T Consensus       184 ~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~  261 (282)
T PRK12848        184 MVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGL-GWAYYWGLLVAAALFVYQ-QKLIRDREREACF  261 (282)
T ss_pred             hccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHH
Confidence            9999999999999999999987543 456666666667777777765 666665554444444444 5577778899999


Q ss_pred             HHHHHHhHHHHHHHHHHHHh
Q psy13659        240 KLFRFSLLHLPALMILLLIN  259 (306)
Q Consensus       240 ~~F~~s~~~~~~l~~~~l~~  259 (306)
                      +.|+.|.+++.++++++++|
T Consensus       262 ~~F~~n~~~g~~l~~~~~~~  281 (282)
T PRK12848        262 KAFLNNNWVGLVLFAGIAAS  281 (282)
T ss_pred             HHHHhCcHHHHHHHHHHHHh
Confidence            99999999999999998876

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=6.7e-46  Score=346.62  Aligned_cols=250  Identities=20%  Similarity=0.192  Sum_probs=209.9

Q ss_pred             EEEec-CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659          3 GYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG   81 (306)
Q Consensus         3 G~~la-~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~   81 (306)
                      |+++| ++.+++..+++.+++++++++++|++|||+|+|+|++|+||++||+|||++|++||..++.+++++++.++. .
T Consensus        34 g~~lA~~~~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~-~  112 (290)
T PRK12870         34 AVFLAAHGLPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAF-F  112 (290)
T ss_pred             HHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-H
Confidence            44455 456788888899999999999999999999999999999999999999999999999999999999998885 6


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659         82 VNGLTAALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS  160 (306)
Q Consensus        82 l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a  160 (306)
                      +|+.++.+++.+++. ..+||++||++.+ |+++|... ++++++||.+++|+++   +.++++++..++|+.+||+.++
T Consensus       113 l~~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~lg~~~-~~~~l~g~~a~~g~~~---~~~~~l~~~~~lw~~~~d~~~a  187 (290)
T PRK12870        113 LNPLSFWLCVAAVPV-IFLYPLAKRVFPVPQLVLAIAW-GFAVLISWSAVTGHLD---LGTWLLWAATVFWTLGFDTVYA  187 (290)
T ss_pred             HhHHHHHHHHHHHHH-HHHhhhhhhccccceeeehHHH-HhHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence            899998888888876 8899999999999 67777776 5899999999999998   7888999999999999999999


Q ss_pred             hhcchhHHHcCCccccccCCchhHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh--ccCChHH
Q psy13659        161 WNLRPDYSRAGYRMMAVTNPDLCRLT-SLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFY--KESDSSS  237 (306)
Q Consensus       161 ~~D~edD~~~G~~tl~v~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~--~~~~~~~  237 (306)
                      +||+|||+++|+||+|+++|++++.. ...+......++.+++..|. +++|.+. +.+....+.+++...  +.++++.
T Consensus       188 ~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~y~~~-~~~~~~~l~~~~~~~~~~~~~~~~  265 (290)
T PRK12870        188 MSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLEL-HLPFWIG-LAIAAVLWARQYRRLRQANLPPLA  265 (290)
T ss_pred             hhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHH-HHHHHHHHHHHHHHhcccCCChHH
Confidence            99999999999999999999976553 33455566666677777775 4555443 333444445555555  3357789


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHhc
Q psy13659        238 SRKLFRFSLLHLPALMILLLINK  260 (306)
Q Consensus       238 ~~~~F~~s~~~~~~l~~~~l~~~  260 (306)
                      |++.|+.|.+++.+++++++++.
T Consensus       266 ~~~~F~~n~~~g~~~~~~~~~~~  288 (290)
T PRK12870        266 YGQLFLQNVWIGFLLLAGMILGS  288 (290)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHh
Confidence            99999999999999999998864

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=1.7e-45  Score=342.60  Aligned_cols=242  Identities=23%  Similarity=0.256  Sum_probs=204.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy13659         11 FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALG   90 (306)
Q Consensus        11 ~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~   90 (306)
                      +++..+++..++++++++++|++|||+|+|+|++|+||++||+|+|++|++||+.++.+++++|+.+++ .+|+.+..++
T Consensus        37 ~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~  115 (281)
T TIGR01474        37 PPLYLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLL-QLNPLTILLG  115 (281)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence            577778888899999999999999999999999999999999999999999999999999999999875 5899999999


Q ss_pred             HHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhHHH
Q psy13659         91 LFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSR  169 (306)
Q Consensus        91 ~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD~~  169 (306)
                      +.++++ .+.||.+||++.+ +++.|.. +++++++||.+++|+++   +..++++...++|+.+|++.+++||+|||++
T Consensus       116 ~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~-~~~~~~~g~~a~~g~~~---~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~  190 (281)
T TIGR01474       116 VASLAL-VATYPFMKRITYWPQLVLGLA-FGWGALMGWAAVTGDLS---TAAWVLYLANILWTLGYDTIYAMQDKEDDIK  190 (281)
T ss_pred             HHHHHH-HHHhchhcccccccHHHHHHH-HHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence            999988 8999999999999 5566655 56999999999999988   7788888999999999999999999999999


Q ss_pred             cCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhHH
Q psy13659        170 AGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLH  248 (306)
Q Consensus       170 ~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~s~~~  248 (306)
                      +|+||+|+++|+++.+ ....+.+.....++.++..+ .++.|.+...+.+..+.+... ..+.+++++|++.|+.|.++
T Consensus       191 ~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~F~~~~~~  268 (281)
T TIGR01474       191 IGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAG-LGPVYYLGLAAAALLLIRQIA-TLDIRDPENCLKLFKANNYV  268 (281)
T ss_pred             cCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHhhHH
Confidence            9999999999986544 33445555555555544444 466776655555555555555 44777888999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy13659        249 LPALMILLLINK  260 (306)
Q Consensus       249 ~~~l~~~~l~~~  260 (306)
                      +.++++++++|.
T Consensus       269 ~~~l~~~~~~~~  280 (281)
T TIGR01474       269 GLLLFAGIALGW  280 (281)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.2e-45  Score=340.65  Aligned_cols=243  Identities=16%  Similarity=0.109  Sum_probs=193.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy13659          9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAA   88 (306)
Q Consensus         9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~   88 (306)
                      +.+++..+++++++++++++++|++|||+|||+|++|+||++||+|||++|++||+.++..+.++++.+++ ++|+.+..
T Consensus        42 ~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~-~~n~~~~~  120 (291)
T PRK12874         42 GWFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSY-FINPLAFK  120 (291)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHH
Confidence            45788889999999999999999999999999999999999999999999999999999999988888774 58999988


Q ss_pred             HHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhH
Q psy13659         89 LGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDY  167 (306)
Q Consensus        89 l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD  167 (306)
                      +++..++. ..+||++||++++ |+++|.. +++|+++||.+++|+++   +..+++++..++||.+|++.+++||+|||
T Consensus       121 l~~~~~~~-~~~Y~~~KR~t~~~~~~~g~~-~~~~~l~G~~av~g~~~---~~~~~l~~~~~~w~~~~~~~~a~~D~~~D  195 (291)
T PRK12874        121 LSFPFLIV-LGGYSYFKRFSSLAHLVLGLS-LGLAPIAGVVAVLGEIP---LWSVFLALGVMFWVAGFDLLYSLQDMEFD  195 (291)
T ss_pred             HHHHHHHH-HHHHhhhcccccccHHHHHHH-HHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            87655555 8899999999999 5555555 67999999999999988   77888999999999999999999999999


Q ss_pred             HHcCCccccccCCchhHH-HHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Q psy13659        168 SRAGYRMMAVTNPDLCRL-TSLRYTVAL-LVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFS  245 (306)
Q Consensus       168 ~~~G~~tl~v~~G~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~s  245 (306)
                      +++|+||+|+++|++++. .+..+.... +.....++..+ .+++| .+++++++.++++++++.+.++++. ++.|+.+
T Consensus       196 ~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ff~s  272 (291)
T PRK12874        196 KKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAH-LGLFA-YLGVIVSALILLYEHYLVRKDFKKI-DKAFFTL  272 (291)
T ss_pred             HHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhc-chHHH-HHHHHHHHHHHHHHHHHhcCCChHH-HHHHHHH
Confidence            999999999999986543 333333222 22222222222 23444 3566678888999999988777764 5566666


Q ss_pred             hHHHHHHH-HHHHHhc
Q psy13659        246 LLHLPALM-ILLLINK  260 (306)
Q Consensus       246 ~~~~~~l~-~~~l~~~  260 (306)
                      +.|+++++ +++++|.
T Consensus       273 n~~l~~l~~~~~~~~~  288 (291)
T PRK12874        273 NGYLGIVFFIFIVLDV  288 (291)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            66666544 5555553

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=2.1e-45  Score=342.50  Aligned_cols=250  Identities=21%  Similarity=0.249  Sum_probs=212.8

Q ss_pred             EEEec-CCC-CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy13659          3 GYAMA-PAP-FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF   80 (306)
Q Consensus         3 G~~la-~g~-~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~   80 (306)
                      |++++ ++. +++..+++++++++++++++|++|||+|+|+|++|+||++||+|||++|+++|+.++..+.++|+.+++ 
T Consensus        32 g~~la~~~~~~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-  110 (285)
T PRK12847         32 GLLLASHSLLPDISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILL-  110 (285)
T ss_pred             HHHHHhCccCCcHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-
Confidence            34445 333 678888999999999999999999999999999999999999999999999999999999999998874 


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659         81 GVNGLTAALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL  159 (306)
Q Consensus        81 ~l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~  159 (306)
                      .+|+.++.+++.+++. ..+||.+||++.+ +++.|..+ ++++++||.+++|+++   +.++++++..++|+.+|++.+
T Consensus       111 ~~~~~~~~~~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~~-~~~~l~~~~a~~g~~~---~~~~~l~~~~~~w~~~~~~~~  185 (285)
T PRK12847        111 LLNKTTIYLSFIAVIL-IVLYPLMKRFFYWPQLFLGFTF-NMGILMAFAAVQNQLD---IEAILLYIGCIFWTIGYDTIY  185 (285)
T ss_pred             HHhHHHHHHHHHHHHH-HHhccccccCCcccHHHHHHHH-HHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999888 8999999999999 56666665 5899999999999988   888999999999999999999


Q ss_pred             hhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659        160 SWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS  238 (306)
Q Consensus       160 a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~  238 (306)
                      ++||+|||+++|+||+|+++|++++. ....+.+.....+.++++.|..+++|...++.  ......+++..+.+++++|
T Consensus       186 a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~--~~~l~~~~~~~~~~~~~~~  263 (285)
T PRK12847        186 AYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLAILAA--AGIFYYQYKLLDFDNPANC  263 (285)
T ss_pred             HhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH--HHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999987544 44445555556666677777777777654432  3455566667778888999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHhc
Q psy13659        239 RKLFRFSLLHLPALMILLLINK  260 (306)
Q Consensus       239 ~~~F~~s~~~~~~l~~~~l~~~  260 (306)
                      +|.|+.|.+++.++++++++++
T Consensus       264 ~~~f~~~~~~~~l~~~~~~~~~  285 (285)
T PRK12847        264 MYAFKANHYVGLLLFLGAVLGR  285 (285)
T ss_pred             HHHHHHhHHHHHHHHHHHHhCC
Confidence            9999999999999999988753

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.6e-45  Score=339.35  Aligned_cols=246  Identities=20%  Similarity=0.130  Sum_probs=201.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy13659          7 APAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLT   86 (306)
Q Consensus         7 a~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~   86 (306)
                      +++.+++..+++.+++++++++++|++|||+|||+|++|+||++||+|+|++|++||+.++..+..+++.++. .+|+.+
T Consensus        32 ~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~~~~~~~l~l~~-~l~~~~  110 (284)
T PRK12888         32 SDGSVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALAVFLGAAA-LLNPLC  110 (284)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHH
Confidence            3567899889999999999999999999999999999999999999999999999999999988888887764 689999


Q ss_pred             HHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcch
Q psy13659         87 AALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRP  165 (306)
Q Consensus        87 ~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e  165 (306)
                      +.++..+++. ..+||++||++.+ |.++|.. +++++++||++++|+++   +.++++++..++|+.+|++.|++||+|
T Consensus       111 ~~l~~~~~~~-~~~Y~~~Kr~t~~~~~~lg~~-~~~~~l~g~~a~~g~~~---~~~~ll~~~~~~w~~~~~~i~a~~D~e  185 (284)
T PRK12888        111 LALAPLAVAP-LVVYPYAKRFTNFPHAILGLA-QAVGPVGAWIAVTGTWS---WPAVLLGLAVGLWIGGFDLIYACQDAE  185 (284)
T ss_pred             HHHHHHHHHH-HHHHHHhhcccchhhHHHHHH-HHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            8888888777 7899999999999 6666776 57999999999999988   888999999999999999999999999


Q ss_pred             hHHHcCCccccccCCchhHHH-H-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHH
Q psy13659        166 DYSRAGYRMMAVTNPDLCRLT-S-LRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFR  243 (306)
Q Consensus       166 dD~~~G~~tl~v~~G~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~  243 (306)
                      ||+++|+||+|+++|++++.. . ..+......+...+.. ...++.|.+.. ......+.++++..+.+|+++|++.|+
T Consensus       186 ~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~-~~~~~~y~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ff  263 (284)
T PRK12888        186 VDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLA-VGFGALWWIGL-AITAGAFAYEHAIVSPTDLSRVNRAFF  263 (284)
T ss_pred             HHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHH-hCCcHHHHHHH-HHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence            999999999999999975543 2 2232333222222233 33466665433 344556667778888889999998865


Q ss_pred             -HHhHHHHHHHHHHHHhc
Q psy13659        244 -FSLLHLPALMILLLINK  260 (306)
Q Consensus       244 -~s~~~~~~l~~~~l~~~  260 (306)
                       .|.+.+.+++++++++.
T Consensus       264 ~~n~~ig~~~~~~~~~~~  281 (284)
T PRK12888        264 TANGFVGIALFGFALLDL  281 (284)
T ss_pred             HHhhHHHHHHHHHHHHHH
Confidence             77777777888888765

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=7.6e-45  Score=339.01  Aligned_cols=243  Identities=20%  Similarity=0.242  Sum_probs=202.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13659         10 PFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAAL   89 (306)
Q Consensus        10 ~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l   89 (306)
                      .+++..+++.+++++++++++|++||++|||+|++|+|||+||+|||++|++||+.+..++.++++.+++ .+|+.++.+
T Consensus        41 ~~~~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~-~l~~~~~~l  119 (289)
T PLN02809         41 LPDLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILL-QLNNYSRIL  119 (289)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Confidence            3678888899999999999999999999999999999999999999999999999999999999998885 579999888


Q ss_pred             HHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHH-HHHHHHHhHhHHHHHhhhhcchhH
Q psy13659         90 GLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFL-LSAILFTWQFPHFNALSWNLRPDY  167 (306)
Q Consensus        90 ~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~-l~~~~~~w~~~~~~~~a~~D~edD  167 (306)
                      ++.+++. ..+||++||++++ |++.|.. +++++++||.+++|+++   +..++ ++...++|+.+||+.+++||+|||
T Consensus       120 ~~~~~~~-~~~Y~~~KR~t~~~~~~lg~~-~~~~~l~g~~av~g~~~---~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D  194 (289)
T PLN02809        120 GASSLLL-VFTYPLMKRFTFWPQAFLGLT-FNWGALLGWAAVKGSLD---PAVVLPLYASGVCWTLVYDTIYAHQDKEDD  194 (289)
T ss_pred             HHHHHHH-HHHHhHHHhcCcchHHHHHHH-HHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence            8888877 8899999999999 6666666 57999999999999987   55554 888899999999999999999999


Q ss_pred             HHcCCccccccCCchhHHHHHHHHHH-HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHh
Q psy13659        168 SRAGYRMMAVTNPDLCRLTSLRYTVA-LLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSL  246 (306)
Q Consensus       168 ~~~G~~tl~v~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~s~  246 (306)
                      +++|+||+|+++|++++..+..+... ...+..+++..+...++| +.. ......+.++++..+.+++++|++.|+.|.
T Consensus       195 ~~~Gi~sl~v~~G~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~-~~~-~~~~~~l~~~~~~v~~~~~~~~~~~F~~n~  272 (289)
T PLN02809        195 LKVGVKSTALRFGDDTKLWLTGFGAASIGGLALSGYNAGLGWPYY-AGL-AAAAGHLAWQIQTVDLSSRADCNRKFVSNK  272 (289)
T ss_pred             HhCCCcccchhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence            99999999999999865544333332 333333445555444444 333 333445666778888888999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q psy13659        247 LHLPALMILLLINK  260 (306)
Q Consensus       247 ~~~~~l~~~~l~~~  260 (306)
                      +.+.++++++++++
T Consensus       273 ~~g~~~~~~~~~~~  286 (289)
T PLN02809        273 WFGAIVFAGIVLGK  286 (289)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998865

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=3.9e-45  Score=344.74  Aligned_cols=243  Identities=23%  Similarity=0.234  Sum_probs=203.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13659         10 PFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAAL   89 (306)
Q Consensus        10 ~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l   89 (306)
                      .+++..++++.++++++++++|++|||+|+|+|++|+||++||+|+|++|++||+.++.++.++|+.+++ ..|+.++.+
T Consensus        68 ~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~-~~~~~~~~l  146 (314)
T PRK12878         68 LLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL-QFNWFAIAL  146 (314)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH
Confidence            5677778899999999999999999999999999999999999999999999999999999999998885 579999999


Q ss_pred             HHHHHHHHHHhcCCCccchhHH-HHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhHH
Q psy13659         90 GLFNMVLYTSVYTPMKRISIAN-TWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYS  168 (306)
Q Consensus        90 ~~~~~~ly~~~Ys~lKr~t~~~-~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD~  168 (306)
                      ++.+++. .++||.+||++.++ .+.|.. +++++++||++++|+++   +.+++++...++|+.+|++.+++||+|||+
T Consensus       147 ~~~~~~~-~~~Y~~~KR~t~~~~~~~Gl~-~~~~~l~g~~a~~g~~~---~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~  221 (314)
T PRK12878        147 GIASLAI-VAAYPFMKRITWWPQFFLGLA-FSWGALMGWAAHFGSLS---LAAVLLYAGSIAWTIGYDTIYAHQDKEDDA  221 (314)
T ss_pred             HHHHHHH-HHHHHHHHhcCCcchHHHHHH-HHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence            9999888 89999999999994 555554 67999999999999998   788999999999999999999999999999


Q ss_pred             HcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhH
Q psy13659        169 RAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLL  247 (306)
Q Consensus       169 ~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~s~~  247 (306)
                      ++|+||+|+++|+++++ ....+.+....+++.+...+. +++|++..+..++.+ ...++..+.+++++|++.|+.|.+
T Consensus       222 ~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~F~~n~~  299 (314)
T PRK12878        222 LIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAGV-PLLALLGLLAAAAHL-AWQIARLDIDDPDQCLRLFKSNRD  299 (314)
T ss_pred             HcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHH-HHHHHHcccCChHHHHHHHHHhHH
Confidence            99999999999987544 445555555555555555554 677765544443332 222333445678889999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy13659        248 HLPALMILLLINK  260 (306)
Q Consensus       248 ~~~~l~~~~l~~~  260 (306)
                      ++.++++++++|.
T Consensus       300 ~~~ll~~~l~~~~  312 (314)
T PRK12878        300 AGLLIFLGLVVGG  312 (314)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.3e-44  Score=333.70  Aligned_cols=245  Identities=15%  Similarity=0.090  Sum_probs=193.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13659         10 PFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAAL   89 (306)
Q Consensus        10 ~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l   89 (306)
                      .|+|..+++..++.+++|++||++|||+|||+|++|+||++||+|+|++|++||+.++..+.++++.+. ..+|+.++.+
T Consensus        43 ~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~-~~ln~l~~~l  121 (300)
T PRK12876         43 LGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLC-WLLNPLCFSL  121 (300)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHH
Confidence            678999999999999999999999999999999999999999999999999999999987777777666 4689999999


Q ss_pred             HHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCC-CCCcch----HHHHHHHHHHHhHhHHHHHhhhhc
Q psy13659         90 GLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGS-LLDGSG----GAFLLSAILFTWQFPHFNALSWNL  163 (306)
Q Consensus        90 ~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~-~~~~~~----~~~~l~~~~~~w~~~~~~~~a~~D  163 (306)
                      ++.++++ ..+||++||+|++ |+++|... ++++++||.|++++ .+   +    ..++..+..++|...+|+.|++||
T Consensus       122 ~~~~~~~-~~iY~~~KR~t~~~~~vLGl~~-~~~~l~~~~Av~~~~~~---~~l~~~~~lw~~~~~~~~~g~DiiYa~qD  196 (300)
T PRK12876        122 AVLSTLL-MIIYPYTKRVTFLCHWILGLVY-YLAILMNFFAIIETPLS---FSLFCMASLWGISFGMIIAANDIIYAIQD  196 (300)
T ss_pred             HHHHHHH-HHHHHhHhcCCchhHHHHHHHH-HHHHHHHHHHHhcCccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999 5899999999999 56667765 68999999998877 33   3    233444455666679999999999


Q ss_pred             chhHHHcCCccccccCCchhHHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHhccCChHHHHH
Q psy13659        164 RPDYSRAGYRMMAVTNPDLCRLTS--LRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYF-TYLAYKFYKESDSSSSRK  240 (306)
Q Consensus       164 ~edD~~~G~~tl~v~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~  240 (306)
                      +|||++.|+||+|+++|++++...  ..+.+....+...++..+...++|....+...... .++++++.++++++.|++
T Consensus       197 ~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  276 (300)
T PRK12876        197 LEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQK  276 (300)
T ss_pred             HhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence            999999999999999999765322  23444444443445555544444543332222222 455556677778899999


Q ss_pred             HHHHHhHHHHHHHHHHHHhc
Q psy13659        241 LFRFSLLHLPALMILLLINK  260 (306)
Q Consensus       241 ~F~~s~~~~~~l~~~~l~~~  260 (306)
                      .|+.|.+.+.+++++++..+
T Consensus       277 ~F~~N~~ig~~~~~~~~~~~  296 (300)
T PRK12876        277 FFLGNIYLALSFFVNMIGLF  296 (300)
T ss_pred             HHHhcCHHHHHHHHHHHHHH
Confidence            99999999999998887654

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.3e-43  Score=332.11  Aligned_cols=251  Identities=16%  Similarity=0.106  Sum_probs=196.2

Q ss_pred             EEEec-CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659          3 GYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG   81 (306)
Q Consensus         3 G~~la-~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~   81 (306)
                      |++++ ++.+++..+++.+++++++++++|++|||+|||+|++|+||++||+|+|++|++||+.+...+.+.++.+. .+
T Consensus        37 g~~la~~~~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~-~~  115 (300)
T PRK13106         37 GAFVAIKGIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASA-YL  115 (300)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHH-HH
Confidence            55566 35678888889999999999999999999999999999999999999999999999999877777776666 46


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCc-----chHHHHHHHHHHHhHhHH
Q psy13659         82 VNGLTAALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDG-----SGGAFLLSAILFTWQFPH  155 (306)
Q Consensus        82 l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~-----~~~~~~l~~~~~~w~~~~  155 (306)
                      +|+.+..++..+++. ...||++||++++ |+++|..+| +++++||.+++|....+     ...+++++...++|+.++
T Consensus       116 ln~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~lg~~~~-~~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~  193 (300)
T PRK13106        116 VNRWALLLSPIVALI-AMSYPYMKRYTAFANYHLASIQG-LAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGF  193 (300)
T ss_pred             HhHHHHHHHHHHHHH-HHHHhHHhcCCcchHHHHHHHHH-HHHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            899998888887777 7789999999999 899999986 78999999988744200     034567777899999999


Q ss_pred             HHHhhhhcchhHHHcCCccccccCCchhHHHHH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy13659        156 FNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSL-RYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESD  234 (306)
Q Consensus       156 ~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~  234 (306)
                      |+.|++||+|||+++|+||+|+++|+++.+... .+..........++..+ .++.|.+..++... .+.++++..+.+ 
T Consensus       194 d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~~~~~~~~~~v~l~~~~~~~~~-lg~~y~~~~~~~~~-~l~~~~~~~~~~-  270 (300)
T PRK13106        194 DLYNHIPDAEFDREMGLHSFAVVLGKWALTFAGLNQLFSVVLDLLGDLYYG-LGPIAIAATILHGL-IMAYAYYLASKK-  270 (300)
T ss_pred             HHHHHccchhhHHHCCCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHH-HHHHHHHHhCCc-
Confidence            999999999999999999999999955544332 33333333222223333 46666654443333 344445555433 


Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy13659        235 SSSSRKLFRFSLLHLPALMILLLINK  260 (306)
Q Consensus       235 ~~~~~~~F~~s~~~~~~l~~~~l~~~  260 (306)
                       ++|++.|+.|.+.+.++++++++|.
T Consensus       271 -~~~~~~F~~n~~ig~~~~~~~~~~~  295 (300)
T PRK13106        271 -GDFGRAFYYNIYSSIVLGLGIIIDV  295 (300)
T ss_pred             -hHHHHHHHHccHHHHHHHHHHHHHH
Confidence             8899999999999989999988875

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=2.3e-43  Score=328.28  Aligned_cols=253  Identities=19%  Similarity=0.153  Sum_probs=202.3

Q ss_pred             EEEec-CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659          3 GYAMA-PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG   81 (306)
Q Consensus         3 G~~la-~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~   81 (306)
                      |+++| ++.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|+|++|+++|+.++.++.++++.++. .
T Consensus        24 g~~la~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~-~  102 (282)
T TIGR01475        24 GALLAAKGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFLSASY-F  102 (282)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-H
Confidence            45555 456888889999999999999999999999999999999999999999999999999999988877777764 6


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659         82 VNGLTAALGLFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS  160 (306)
Q Consensus        82 l~~~~~~l~~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a  160 (306)
                      +|+.+..++..+.++ ...||++||++++ |+++|... ++++++||.+++|+++.. ..++++++..++|+.+|++.++
T Consensus       103 l~~~~~~l~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~~-~~~~~~g~~a~~g~~~~~-~~~~ll~~~~~~w~~~~~~i~~  179 (282)
T TIGR01475       103 LNPLAFILSPLVLLV-LIIYPYTKRFTFLCHYVLGSTY-GLAPLAGWVAVIGTISFF-LVAWLLGIGVGFWIAGFDLIYA  179 (282)
T ss_pred             HhHHHHHHHHHHHHH-HHHHhhHhccccccHHHHHHHH-HHHHHHHHHHHhCCccch-HHHHHHHHHHHHHHHHHHHHHH
Confidence            899888888877777 7899999999999 66777775 589999999999886621 4567888899999999999999


Q ss_pred             hhcchhHHHcCCccccccCCchh-HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q psy13659        161 WNLRPDYSRAGYRMMAVTNPDLC-RLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSR  239 (306)
Q Consensus       161 ~~D~edD~~~G~~tl~v~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~  239 (306)
                      +||+|||+++|+||+|+++|+++ ++....+....+....++...+..++.|.+..++.+ .++..++++.+.+++++|+
T Consensus       180 ~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~-~~l~~~~~~~~~~~~~~~~  258 (282)
T TIGR01475       180 IQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLALILIG-LILAYEHYIVDPGDQSKIQ  258 (282)
T ss_pred             HhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH-HHHHHHHHHcCCCCHHHHH
Confidence            99999999999999999999753 333333333333333343343445677766555544 6677788888888899999


Q ss_pred             HHHHHHhHHHHH-HHHHHHHhc
Q psy13659        240 KLFRFSLLHLPA-LMILLLINK  260 (306)
Q Consensus       240 ~~F~~s~~~~~~-l~~~~l~~~  260 (306)
                      +.|+.++.++.+ ++++++++.
T Consensus       259 ~~ff~~~~~l~~~~~~g~~~~~  280 (282)
T TIGR01475       259 RAFFYANGFLSITFLIGVIIDV  280 (282)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHH
Confidence            987777666654 556777654

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>KOG1381|consensus

Probab=100.00  E-value=8.7e-43  Score=313.06  Aligned_cols=242  Identities=24%  Similarity=0.276  Sum_probs=212.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy13659         11 FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALG   90 (306)
Q Consensus        11 ~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~   90 (306)
                      ++..++.++.+|.++|+++||+|||.+|+|+|++++||+.|||+||++|+++|+.|-..+..+|+.++ .++|+++..++
T Consensus       100 p~~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiL-lqLn~ysi~lg  178 (353)
T KOG1381|consen  100 PSIKMLALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGIL-LQLNWYSIALG  178 (353)
T ss_pred             chhHHHHHhcccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHH-HhccHHHHHhc
Confidence            78889999999999999999999999999999999999999999999999999999999999999998 48999999999


Q ss_pred             HHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhHHH
Q psy13659         91 LFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSR  169 (306)
Q Consensus        91 ~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD~~  169 (306)
                      ..++.+ ++.||.+||+|+| |.++|.+++ ++.+.||.|..|+..+  ...+.+++...+|+..+|++|+|||++||.+
T Consensus       179 ~~sl~~-v~~ypl~kr~TY~pq~vLgltfn-wGAllGw~A~~g~~~~--s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk  254 (353)
T KOG1381|consen  179 ASSLAL-VITYPLMKRFTYWPQLVLGLTFN-WGALLGWCALKGSLSP--SAVLPLYLSGVCWTLIYDTIYAHQDKRDDVK  254 (353)
T ss_pred             cccccc-EEEeehhhhcchhHHHHHhhhcc-hhhhhcchhhcCccCh--hhhhHHHHhhhhhhhhhhhhhhcccchhhhH
Confidence            999988 8899999999999 899999985 9999999999999883  3667888999999999999999999999999


Q ss_pred             cCCccccccCCchhHHHHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc--cCChHHHHHHHHHHh
Q psy13659        170 AGYRMMAVTNPDLCRLTSLRYTVAL-LVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYK--ESDSSSSRKLFRFSL  246 (306)
Q Consensus       170 ~G~~tl~v~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~~F~~s~  246 (306)
                      +|+|+++.++|++|+.+...+.... ..++..++..|.+.++|..+    ++.-.+...++++  .+++++|+|.|+.|+
T Consensus       255 ~gvkSTALrfG~nTK~wl~gf~a~~ia~La~aG~~s~q~~pyy~~l----g~~~~~L~~~i~~vdiDnp~dC~k~f~sN~  330 (353)
T KOG1381|consen  255 IGVKSTALRFGDNTKPWLSGFGAAQIASLAAAGIASDQTWPYYAAL----GAVAARLGSQIYKVDIDNPSDCWKKFKSNS  330 (353)
T ss_pred             hcchhhhhhcCCCCchHHhhhhHHHHHHHHHhhhccCCCchHHHHH----HHHHHHHHhheeeeecCChHHHHHHHHhcC
Confidence            9999999999999988766665554 34566677788777777543    2233345555554  678999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q psy13659        247 LHLPALMILLLINKK  261 (306)
Q Consensus       247 ~~~~~l~~~~l~~~~  261 (306)
                      +.+.+++.++.+|..
T Consensus       331 ntGli~~~~i~~d~l  345 (353)
T KOG1381|consen  331 NTGLILFSGIVLDTL  345 (353)
T ss_pred             cchHHHHHHHHHHHH
Confidence            999999999988764

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=6.3e-40  Score=304.80  Aligned_cols=248  Identities=15%  Similarity=0.162  Sum_probs=213.5

Q ss_pred             EEEecC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659          3 GYAMAP-APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG   81 (306)
Q Consensus         3 G~~la~-g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~   81 (306)
                      |++++. +.+++..+++.+++++++++++|++|||+|+|+|++|+  |+||+|||++|+++|+.++..+.++|+.+++ .
T Consensus        25 g~~la~~~~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~--~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~  101 (279)
T PRK09573         25 GYLIASNFKIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINK--PERPIPSGRISLKEAKIFSITLFIVGLILSI-F  101 (279)
T ss_pred             HHHHHccCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccC--CCCCcCCCccCHHHHHHHHHHHHHHHHHHHH-H
Confidence            455553 35678888899999999999999999999999999998  6999999999999999999999999998885 5


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCC-CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659         82 VNGLTAALGLFNMVLYTSVYTP-MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL  159 (306)
Q Consensus        82 l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~  159 (306)
                      +|+.++.+++.+++. ..+||. +||++++ |+++|.+.|.. ++.|+.+.++.     ...++++...++|+..+++.+
T Consensus       102 l~~~~~~l~~~~~~~-~~~Ys~~lKr~~~~~~~~vg~~~G~~-~~~g~~~~~~~-----~~~~~l~~~~f~~~~~~~~~~  174 (279)
T PRK09573        102 INIYAFLIALLNSIL-LYLYAKDLKKTGLIGNLIVAYLTGLS-FIFGGLAVFNV-----LRIIILFLCAFFSTWSREIVK  174 (279)
T ss_pred             HhHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHH-HHHHHHHHccc-----hHHHHHHHHHHHHHHHHHHHh
Confidence            899999888888887 789996 9999998 99999999854 78888888763     456678888899999999999


Q ss_pred             hhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659        160 SWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS  238 (306)
Q Consensus       160 a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~  238 (306)
                      +++|+|+|+++|+||+|+++|+++.. ....+....+.++.+++..+..+++|.+.+++.++.+++.++++++.+++++|
T Consensus       175 ~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~  254 (279)
T PRK09573        175 DIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIAMLILLKNPSIEGA  254 (279)
T ss_pred             hhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH
Confidence            99999999999999999999986443 45556666666777777777678889888888889999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHhc
Q psy13659        239 RKLFRFSLLHLPALMILLLINK  260 (306)
Q Consensus       239 ~~~F~~s~~~~~~l~~~~l~~~  260 (306)
                      ++.++.+..++.+-.+.+++++
T Consensus       255 ~~~~~~~~~~m~~g~~~~~~~~  276 (279)
T PRK09573        255 SKASKYLKIIMILGLIAFLIGS  276 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999998887777777654

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=1.1e-38  Score=297.75  Aligned_cols=242  Identities=24%  Similarity=0.211  Sum_probs=203.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy13659         11 FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALG   90 (306)
Q Consensus        11 ~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~   90 (306)
                      +++...++.+++++++++++|++||++|+|+||+|+||++||+|||++|+++|+.+..++.++++.+++ .+|+.++.++
T Consensus        44 ~~~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~-~l~~~~~~l~  122 (289)
T COG0382          44 PSLKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALAL-LLNPLAFLLS  122 (289)
T ss_pred             chHHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHH
Confidence            446788999999999999999999999999999999999999999999999999999999999999985 6899988888


Q ss_pred             HHHHHHHHHhcCCCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhHHH
Q psy13659         91 LFNMVLYTSVYTPMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSR  169 (306)
Q Consensus        91 ~~~~~ly~~~Ys~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD~~  169 (306)
                      +.++++ ...|+.+||.+++ |.++|..++ +++++|+.+++++..   ...+++++..++|+..+++.++++|+|+|++
T Consensus       123 ~~~~~l-~~~Y~~~Kr~~~~~~~~lg~~~~-~~~~~g~~a~~~~~~---~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~  197 (289)
T COG0382         123 LAALVL-ALAYPFLKRFTFLPQLVLGLAFG-LGALAGAAAVGGSLP---LLAWLLLLAAILWTLGYDIIYAIQDIEGDRK  197 (289)
T ss_pred             HHHHHH-HHHHHHhhcCCchHHHHHHHHHH-HHHHHHHHHHhCccc---hHHHHHHHHHHHHHHHHHHHHhccCccchHh
Confidence            888888 8899779999999 899999986 899999999999877   7889999999999999999999999999999


Q ss_pred             cCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhHH
Q psy13659        170 AGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRFSLLH  248 (306)
Q Consensus       170 ~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~s~~~  248 (306)
                      .|+||+|+.+|++++. ....+....+.+..+++..+..++.|.....+... ....++...+.++++.+++.|+.+...
T Consensus       198 ~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (289)
T COG0382         198 AGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLLGLLVAAL-LLLYQILIVDVRDPPACFALFDVNLLL  276 (289)
T ss_pred             cCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-HHHHHHHHhcccChHHHHHHHHHhhHH
Confidence            9999999999997654 33333444455556666666555455544443333 333444455555889999999999999


Q ss_pred             HHHHHHHHHHh
Q psy13659        249 LPALMILLLIN  259 (306)
Q Consensus       249 ~~~l~~~~l~~  259 (306)
                      +.++++++.++
T Consensus       277 ~~~~~~~~~~~  287 (289)
T COG0382         277 GLLLFIGLILA  287 (289)
T ss_pred             HHHHHHHHHHh
Confidence            99999887764

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.6e-38  Score=293.52  Aligned_cols=244  Identities=23%  Similarity=0.246  Sum_probs=202.0

Q ss_pred             EEEecCCC-CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659          3 GYAMAPAP-FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG   81 (306)
Q Consensus         3 G~~la~g~-~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~   81 (306)
                      |++++.+. .+...+++++++++++++++|++|||+|+|+|++|+  |+||+|+|++|+++|+.++.++.++|+.+++ .
T Consensus        26 g~~~a~~~~~~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~--~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~-~  102 (276)
T PRK12882         26 GAFIAGGILSSPSLTGLAFAAVFLATGAGNAINDYFDREIDRINR--PDRPIPSGAVSPRGALAFSILLFAAGVALAF-L  102 (276)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC--CCCCcCCCCcCHHHHHHHHHHHHHHHHHHHH-H
Confidence            45556433 344456788899999999999999999999999876  7999999999999999999999999999885 5


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCC-CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659         82 VNGLTAALGLFNMVLYTSVYTP-MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL  159 (306)
Q Consensus        82 l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~  159 (306)
                      +|+.++.+++.++++ .+.|+. +||++.+ |+.+|...|.. ++.|+.+.+....   ...+++++..++|+..+++.+
T Consensus       103 l~~~~~~~~~~~~~~-~~~Yt~~lK~~~~~g~~~vg~~~g~~-~~~g~~~~~~~~~---~~~~~l~~~~fl~~~~~~~~~  177 (276)
T PRK12882        103 LPPLCLAIALFNSLL-LVLYAETLKGTPGLGNASVAYLTGST-FLFGGAAVGTEGL---LALLVLFALAALATLAREIIK  177 (276)
T ss_pred             HhHHHHHHHHHHHHH-HHHHHHHHhcccchhHHHHHHHHHHH-HHHHHHHhcccch---HHHHHHHHHHHHHHHHHHHHh
Confidence            899998888888887 779998 8999988 99999988754 6677766554333   556778888899999999999


Q ss_pred             hhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659        160 SWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS  238 (306)
Q Consensus       160 a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~  238 (306)
                      ++||+|||+++|+||+|+++|+++.. .+..+....+..+.+++..+..++.|.+.+++.++.+++.+++..+.+++++|
T Consensus       178 ~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~  257 (276)
T PRK12882        178 DVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGLWYLVLVAPADLVMLAAAYRSLKKTDPTAS  257 (276)
T ss_pred             hhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            99999999999999999999986443 44445555555666666666678888888877888888889999998899999


Q ss_pred             HHHHHHHhHHHHHHHH
Q psy13659        239 RKLFRFSLLHLPALMI  254 (306)
Q Consensus       239 ~~~F~~s~~~~~~l~~  254 (306)
                      ++.|+.+.+.+.+.+.
T Consensus       258 ~~~f~~~~~~g~~~~~  273 (276)
T PRK12882        258 QKLLKYGMFLALAAFI  273 (276)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998877654

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3e-37  Score=286.50  Aligned_cols=237  Identities=21%  Similarity=0.221  Sum_probs=190.2

Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy13659          3 GYAMAPAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGV   82 (306)
Q Consensus         3 G~~la~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l   82 (306)
                      |++++.+..++..+++.+++++++++++|++|||+|+|+|++| | ++||+|+|++|+++|+.++.++.++++.++. .+
T Consensus        26 g~~la~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r-~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~-~l  102 (279)
T PRK12884         26 GAIIALGGLPLDEALLGFLTAFFASGSANALNDYFDYEVDRIN-R-PDRPIPSGRISRREALLLAILLFILGLIAAY-LI  102 (279)
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-C-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HH
Confidence            4555544444556788889999999999999999999999999 6 7999999999999999999999999998885 57


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC-CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659         83 NGLTAALGLFNMVLYTSVYTP-MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALS  160 (306)
Q Consensus        83 ~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a  160 (306)
                      |+.+..+++++++. .+.||. +||++++ |+++|...| +|++.|+.++++..    ...++++...++|+.+|++.++
T Consensus       103 ~~~~~~~~~~~~~~-~~~Ys~~lK~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~  176 (279)
T PRK12884        103 SPLAFLVVILVSVL-GILYNWKLKEYGLIGNLYVAFLTG-MTFIFGGIAVGELN----EAVILLAAMAFLMTLGREIMKD  176 (279)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHhhccccchhHHHHHHHHH-HHHHHHHHHhCCCc----hHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888888776 889998 8999987 788888764 88899998876543    3577888889999999999999


Q ss_pred             hhcchhHHHcCCccccccCCchhHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHH
Q psy13659        161 WNLRPDYSRAGYRMMAVTNPDLCRLT-SLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSR  239 (306)
Q Consensus       161 ~~D~edD~~~G~~tl~v~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~  239 (306)
                      ++|+|||+++|+||+|+++|+++... ...+......++.++++.+..+++|.+...+.+..+++...++++.+++++++
T Consensus       177 ~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~  256 (279)
T PRK12884        177 IEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLAPVLVADLIFLYSAYSLLRSQDRETIR  256 (279)
T ss_pred             hhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            99999999999999999999975443 33333334444455566676778888777666777777778899888888877


Q ss_pred             HHHHHHhHHH
Q psy13659        240 KLFRFSLLHL  249 (306)
Q Consensus       240 ~~F~~s~~~~  249 (306)
                      +. +....+.
T Consensus       257 ~~-~~~~~~~  265 (279)
T PRK12884        257 KV-RKITLTA  265 (279)
T ss_pred             HH-HHHHHHH
Confidence            76 3333333

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.9e-35  Score=274.06  Aligned_cols=251  Identities=16%  Similarity=0.167  Sum_probs=181.1

Q ss_pred             EEEec---CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCC-CC--------CCCCcccCCCCCHHHHHHHHHHH
Q psy13659          3 GYAMA---PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQM-SR--------TKNRVLVRGVLSPLHALGFALAS   70 (306)
Q Consensus         3 G~~la---~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~-~R--------t~~RPL~sG~Is~~~A~~~~~~l   70 (306)
                      |+++|   .+.+++..++++++++.++.+++|++|||+|+|+|++| +|        |++||+|+|++|+++|+.+++++
T Consensus        27 g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l  106 (297)
T PRK12871         27 GLVLAFANYGGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILL  106 (297)
T ss_pred             HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHH
Confidence            44555   35678876665666777777889999999999999864 33        47999999999999999999999


Q ss_pred             HHHHHHHHHHhhHH---HHHHHHHHHHHHHHHhcCCCccchhH--HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHH
Q psy13659         71 SAAGTAMLYFGVNG---LTAALGLFNMVLYTSVYTPMKRISIA--NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLS  145 (306)
Q Consensus        71 ~~~gl~l~~~~l~~---~~~~l~~~~~~ly~~~Ys~lKr~t~~--~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~  145 (306)
                      .++|+.++....++   ..+.+++.+.++ ...|+..||.+.+  +.++|...++++++.||. ++|+++   ...++++
T Consensus       107 ~~i~~~l~~~l~~~~~~~~~~l~~~~~~~-~~~Y~~~kr~~~~p~~~l~G~~~~~~~~~~g~~-~~g~~~---~~~~ll~  181 (297)
T PRK12871        107 AAVTSALILTLPYPNSLYVFVIMLYSYGI-EAFYQVKKRNQKYPVAQLLGRTDFTLFPAAGYL-CYGQPD---MTALLYM  181 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccccHHHHHHHHHHHHHHHHHHH-HhCCCc---HHHHHHH
Confidence            99999887532222   333444455555 5677777776444  445676556788888875 578887   7888888


Q ss_pred             HHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q psy13659        146 AILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTY  224 (306)
Q Consensus       146 ~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~  224 (306)
                      ...++|+.+|++.++++|+|||+++|+||+|+++|++..+ .+..+...... ..++...+. ++.+........+.+..
T Consensus       182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l-~~~~~~~~~-g~~~~~~~~~~~~~~~~  259 (297)
T PRK12871        182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFL-AAIFFLREL-GPIALYGFLAGFVLLAG  259 (297)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHH-HHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987433 33333333322 223334443 32322222233455677


Q ss_pred             HHHHHhccCChHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy13659        225 LAYKFYKESDSSSSRKLFRFSLLHLPALMILLLINK  260 (306)
Q Consensus       225 ~a~~~~~~~~~~~~~~~F~~s~~~~~~l~~~~l~~~  260 (306)
                      .+.+.+|.++++.|.|.|+.=..|..+-....++|.
T Consensus       260 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  295 (297)
T PRK12871        260 ANLYLWKEKSQDAGMKILPLYHASLVIYAVSIILDF  295 (297)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            788889999999999999987777776666666653

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=3.5e-34  Score=265.94  Aligned_cols=239  Identities=21%  Similarity=0.212  Sum_probs=188.5

Q ss_pred             EEEecCCC-CCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy13659          3 GYAMAPAP-FEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG   81 (306)
Q Consensus         3 G~~la~g~-~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~   81 (306)
                      |++++.+. +++..+++.+++.++.++++|++|||+|+|+|++|+  |+||+|+|++|+++|..++.++.++|+.+++ .
T Consensus        25 G~~la~~~~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~-~  101 (277)
T PRK12883         25 GSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINR--PNRPLPRGAMSRKAALYYSLLLFAVGLALAY-L  101 (277)
T ss_pred             HHHHHcCCCCcHHHHHHHHHHHHHHHHHHhHHHhhhhHhccccCC--CCCCCCCCccCHHHHHHHHHHHHHHHHHHHH-H
Confidence            45555333 456667778889999999999999999999999875  7999999999999999999999999998875 5


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCC-CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659         82 VNGLTAALGLFNMVLYTSVYTP-MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL  159 (306)
Q Consensus        82 l~~~~~~l~~~~~~ly~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~  159 (306)
                      +|+.++.+++.+.+. ...||. +||.+.+ |+++|.+.|..| +.|+.++ ++++   +..++. ...++|+..+.+.+
T Consensus       102 ~~~~~~~~~~~~~~~-~~~Y~~~~k~~~~lg~~~vg~~~g~~~-~~g~~a~-~~~~---~~~~~~-~~~fl~~~~~~~~~  174 (277)
T PRK12883        102 INIEAFLFALGAYVL-MFLYAWKLKPLPFIGNVVVALLTGATP-IYGAIAV-GRIG---LAGYLA-ICAFLVNVAREIMK  174 (277)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhhcccCCcchhhHHHHHHHHHHH-HHHHHHh-cccc---HHHHHH-HHHHHHHHHHHHHh
Confidence            899988888888766 889999 9999876 999999998776 6777776 6666   555443 44788888899999


Q ss_pred             hhhcchhHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHH
Q psy13659        160 SWNLRPDYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSS  238 (306)
Q Consensus       160 a~~D~edD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~  238 (306)
                      +++|+|+|+++|+||+|+++|+++.+ ....+....+..+.+++..+. ++.|... ...++.+++.+.++++.++++++
T Consensus       175 ~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~l~~~~~~-~~~y~~~-~~~~~~~l~~~~~~~~~~~~~~~  252 (277)
T PRK12883        175 DIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFLPVKAGI-GLGYLPI-IIVDAIILYAAYLVLRNPDRETA  252 (277)
T ss_pred             hhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHH-HHHHHHHHHHHHHHHhCcchhHH
Confidence            99999999999999999999986443 445555555555566666665 5656544 34678888899999987777665


Q ss_pred             ---HHHHHHHhHHHHHHH
Q psy13659        239 ---RKLFRFSLLHLPALM  253 (306)
Q Consensus       239 ---~~~F~~s~~~~~~l~  253 (306)
                         ++.|+.+...+.+-+
T Consensus       253 ~~~~~~~~~~~~~~~~~~  270 (277)
T PRK12883        253 HKGQKLLKIAIFLAVISF  270 (277)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence               678888887655443

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=2.1e-32  Score=258.41  Aligned_cols=239  Identities=15%  Similarity=0.091  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy13659         16 FLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMV   95 (306)
Q Consensus        16 ~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~~~~   95 (306)
                      ++..++++.++++++|++|||+|+|.|++|+  ++||++||++|+++|+.++.++..+++.+++ .+|+.+..+++.+++
T Consensus        67 ~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~--~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~l~~~~  143 (314)
T PRK07566         67 LAGMLLAGPLLCGTSQTLNDYFDREVDAINE--PYRPIPSGAISLRWVLYLIAVLTVLGLAVAY-LLGPWVFLAALLGLF  143 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCccccCC--CCCCCCCceeCHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHHHH
Confidence            3446677888999999999999999999997  5899999999999999999999999998885 589988888888888


Q ss_pred             HHHHhcC----CCccchhH-HHHHHHHHhhhhhhhhHhhccC-CCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhHHH
Q psy13659         96 LYTSVYT----PMKRISIA-NTWVGSVVGAIPPLMGWAACTG-SLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSR  169 (306)
Q Consensus        96 ly~~~Ys----~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g-~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD~~  169 (306)
                      . .+.||    .+||++++ |+++|..+|.+|++.|+.+.++ ..+   +..++++...++|....+..++++|+|+|++
T Consensus       144 ~-~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~~~~~---~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~  219 (314)
T PRK07566        144 L-AWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGAGLPS---WPIVILALLYSLGAHGIMTLNDFKSVEGDRQ  219 (314)
T ss_pred             H-HHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence            8 88999    38999987 9999999988999999998874 555   7777777788888888889999999999999


Q ss_pred             cCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHhHH
Q psy13659        170 AGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKE-SDSSSSRKLFRFSLLH  248 (306)
Q Consensus       170 ~G~~tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~F~~s~~~  248 (306)
                      +|+||+|+++|+++++...........+...+.........|........++....+.+..++ ++++.+.+.|..+.+.
T Consensus       220 aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (314)
T PRK07566        220 LGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRLLRDPLERDVWYNASAQPFYV  299 (314)
T ss_pred             cCCcccceeEcHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhChhhcChhhhhhhhHHHH
Confidence            999999999999754433222222221222122111112223222223345555666666543 3456777888888888


Q ss_pred             HHHHHHHHHHhcc
Q psy13659        249 LPALMILLLINKK  261 (306)
Q Consensus       249 ~~~l~~~~l~~~~  261 (306)
                      ..+++.++++.+.
T Consensus       300 ~~ll~~~~~~~~~  312 (314)
T PRK07566        300 LGMLVTALAIRHL  312 (314)
T ss_pred             HHHHHHHHHhccc
Confidence            8888888877654

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=3e-32  Score=261.99  Aligned_cols=224  Identities=15%  Similarity=0.141  Sum_probs=180.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHH
Q psy13659         16 FLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG------VNGLTAAL   89 (306)
Q Consensus        16 ~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~------l~~~~~~l   89 (306)
                      ++++++++.++++++|++|||+|+|+|++|+  ++||+|+|++|+++++.++.++.++++.++++.      .|+..+.+
T Consensus       125 ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~--~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l  202 (375)
T PLN00012        125 IVCMLMSGPFLTGYTQTINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYL  202 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHCeecHhhhccCC--CCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            4677788999999999999999999999998  689999999999999998877777777666532      25666777


Q ss_pred             HHHHHHHHHHhcC----CCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcc
Q psy13659         90 GLFNMVLYTSVYT----PMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLR  164 (306)
Q Consensus        90 ~~~~~~ly~~~Ys----~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~  164 (306)
                      +++++++ .++||    .+||++++ |+.+|..++++|+.+|+ +++|.++   +..+++++..++|....++.++++|+
T Consensus       203 ~l~gi~l-~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~-a~~g~~s---~~~illal~~~l~~lai~ivnd~~Di  277 (375)
T PLN00012        203 ALGGSLL-SYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQ-ALFGTLT---PDVVVLTLLYSIAGLGIAIVNDFKSI  277 (375)
T ss_pred             HHHHHHH-hhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHH-HHcCCCC---HHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            8888888 88998    38999998 99999999888888887 6678888   78888888889999999999999999


Q ss_pred             hhHHHcCCccccccCCchhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Q psy13659        165 PDYSRAGYRMMAVTNPDLCRLTSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRF  244 (306)
Q Consensus       165 edD~~~G~~tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~  244 (306)
                      |+|+++|+||+||++|+++.++...+.+.+..++.+++..+..+++|....+.+.+++++.+.+.+.+ |+++....|+.
T Consensus       278 e~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~~~~~y~~~~~~l~l~~l~~~~~~~~~-~p~~~~~~~~~  356 (375)
T PLN00012        278 EGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAIGKPYYALALLGLIIPQIFFQFKYFLP-DPVKNDVKYQA  356 (375)
T ss_pred             hhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence            99999999999999998755544445555555566666666556666555556677777877775543 77777777776


Q ss_pred             HhH
Q psy13659        245 SLL  247 (306)
Q Consensus       245 s~~  247 (306)
                      +..
T Consensus       357 ~a~  359 (375)
T PLN00012        357 SAQ  359 (375)
T ss_pred             HHH
Confidence            654

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=99.97  E-value=5.4e-29  Score=232.82  Aligned_cols=227  Identities=18%  Similarity=0.108  Sum_probs=171.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhccccc--CcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH---hhH
Q psy13659          9 APFEWSSFLICSLGTGLVSSAANAVNQYHEV--PFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF---GVN   83 (306)
Q Consensus         9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~--~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~---~l~   83 (306)
                      +.+++..+++.+++.+++++++|++|||+|+  |+|++++|+++||+++|++|++++..++..+.+++++++.+   ..+
T Consensus        33 ~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~  112 (293)
T PRK06080         33 GSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSG  112 (293)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5678888999999999999999999999998  79999999999999999999999999998888877766542   236


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCc----cchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659         84 GLTAALGLFNMVLYTSVYTPMK----RISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL  159 (306)
Q Consensus        84 ~~~~~l~~~~~~ly~~~Ys~lK----r~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~  159 (306)
                      +..+.+++++++. .+.||..|    ++..-|+.+|..+|...+..+++..++.++   +..+++++..++|+..++..+
T Consensus       113 ~~~~~~~~~~~~~-~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~n  188 (293)
T PRK06080        113 WWLLLLGLLCIAA-AILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGTVD---SAVFLPALPCGLLIGAVLLAN  188 (293)
T ss_pred             HHHHHHHHHHHHH-hhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHhc
Confidence            7777788888777 78999732    333338999999998888888999888888   788888999999999999999


Q ss_pred             hhhcchhHHHcCCccccccCCchhHHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HhccCChH
Q psy13659        160 SWNLRPDYSRAGYRMMAVTNPDLCRLTS--LRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYK-FYKESDSS  236 (306)
Q Consensus       160 a~~D~edD~~~G~~tl~v~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~-~~~~~~~~  236 (306)
                      +++|+|+|+++|+||+|+++|+++.+..  ..+.+.. .......+.+..++++++.  ++..+....+.+ +.++++++
T Consensus       189 ~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ll~--ll~~p~~~~~~~~~~~~~~~~  265 (293)
T PRK06080        189 NIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAY-LCIVLLALLGLASPWGLLF--LLSLPLAVKAARPVLRKQKPE  265 (293)
T ss_pred             CCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHHHhcCCHH
Confidence            9999999999999999999999754422  2222222 2223334445556666532  234555555544 45444444


Q ss_pred             HHHHHH
Q psy13659        237 SSRKLF  242 (306)
Q Consensus       237 ~~~~~F  242 (306)
                      +-....
T Consensus       266 ~~~~~~  271 (293)
T PRK06080        266 TLIPAL  271 (293)
T ss_pred             HHHHHH
Confidence            333333

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.97  E-value=1.1e-28  Score=232.37  Aligned_cols=162  Identities=17%  Similarity=0.116  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHH
Q psy13659         17 LICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGV------NGLTAALG   90 (306)
Q Consensus        17 ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l------~~~~~~l~   90 (306)
                      +.+++++.++++++|++|||+|+|.|++|+|  +||+++|++|++++..++..+..+++.++.+..      |+.++.++
T Consensus        57 l~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~--~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~  134 (306)
T TIGR02056        57 LCMLLSGPCLTGYTQTINDFYDRDIDAINEP--YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA  134 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhhhccCCC--CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence            5556788999999999999999999999985  899999999999999999999999988875421      35667788


Q ss_pred             HHHHHHHHHhcCC----CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcch
Q psy13659         91 LFNMVLYTSVYTP----MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRP  165 (306)
Q Consensus        91 ~~~~~ly~~~Ys~----lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e  165 (306)
                      +++++. .+.||.    +||++++ ++.+|..++.+|+..|+ +++|+++   +..++++...++|....++.++++|+|
T Consensus       135 ~~~~~~-~~~Yt~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~-a~~g~~~---~~~~l~~~~~~l~~~~i~~~n~~~D~e  209 (306)
T TIGR02056       135 LFGSFI-AFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGH-ALFGELN---PDIAVLTLIYSIAGLGIAIVNDFKSVE  209 (306)
T ss_pred             HHHHHH-HHHHcCChhhhhhcccHHHHHHHHHHHHHHHHHHH-HHhCCCc---HHHHHHHHHHHHHHHHHHHHHHccChH
Confidence            888888 889993    8999877 88899988878877776 5578888   778888888999999999999999999


Q ss_pred             hHHHcCCccccccCCchhHH
Q psy13659        166 DYSRAGYRMMAVTNPDLCRL  185 (306)
Q Consensus       166 dD~~~G~~tl~v~~G~~~~~  185 (306)
                      +|+++|+||+|+++|+++.+
T Consensus       210 ~D~~~G~~Tlpv~lG~~~a~  229 (306)
T TIGR02056       210 GDRALGLQSLPVAFGIETAA  229 (306)
T ss_pred             HHHHcCCcCcchhcChHHHH
Confidence            99999999999999987544

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.97  E-value=1.3e-28  Score=229.28  Aligned_cols=167  Identities=16%  Similarity=0.162  Sum_probs=140.7

Q ss_pred             CCHHHHHH-HHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHH-HH
Q psy13659         11 FEWSSFLI-CSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLT-AA   88 (306)
Q Consensus        11 ~~~~~~ll-~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~-~~   88 (306)
                      .++...++ +++++.+.++++|++|||+|+|+|++|+  ++||+++|++|++++..++.++..+++.++.+ ++... ..
T Consensus        34 ~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~--~~Rpi~~G~is~~~a~~~~~~~~~~~~~l~~~-l~~~~~~~  110 (283)
T TIGR01476        34 EHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINE--PQRPIPSGIISLREVRWNWLVLTVAGLLVALV-LGNWLIVL  110 (283)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCC--CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            45654444 6679999999999999999999999998  68999999999999999999999999988864 44444 66


Q ss_pred             HHHHHHHHHHHhcCC----CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhc
Q psy13659         89 LGLFNMVLYTSVYTP----MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNL  163 (306)
Q Consensus        89 l~~~~~~ly~~~Ys~----lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D  163 (306)
                      +++.+++. .+.||.    +||++++ ++.+|..++..|+..|+.+. ++.+   +..++.++...+|.......++++|
T Consensus       111 l~~~~~~~-~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~~i~~~nd~~D  185 (283)
T TIGR01476       111 FTVVGIVL-AVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIF-APLT---WQSVVVALIYSLGAHGIMTLNDFKS  185 (283)
T ss_pred             HHHHHHHH-hheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            77777777 889995    8999887 88999888888888887765 4566   6677777788888888888999999


Q ss_pred             chhHHHcCCccccccCCchhHH
Q psy13659        164 RPDYSRAGYRMMAVTNPDLCRL  185 (306)
Q Consensus       164 ~edD~~~G~~tl~v~~G~~~~~  185 (306)
                      +|+|+++|+||+|+++|+++.+
T Consensus       186 ~~~D~~~G~~Tl~v~lG~~~a~  207 (283)
T TIGR01476       186 VEGDRQLGLRSLPVMIGVKRAA  207 (283)
T ss_pred             hhhHHHcCCcCcceEEcHHHHH
Confidence            9999999999999999997544

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.97  E-value=1.9e-28  Score=232.57  Aligned_cols=204  Identities=13%  Similarity=0.108  Sum_probs=149.0

Q ss_pred             HHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHH-------HH-HHHHH
Q psy13659         20 SLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNG-------LT-AALGL   91 (306)
Q Consensus        20 ~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~-------~~-~~l~~   91 (306)
                      ++++.+.++++|++|||+|+|+|++|+||  ||+|+|++|+++|+.++.++..+++.++.+ ++.       .. +..++
T Consensus        56 ~~~~~L~~~a~~~iND~~D~~~D~~n~rt--Rpl~~G~is~~~al~~~~~l~~la~~lg~~-L~~~~~~~~~~~il~~~~  132 (331)
T PRK12392         56 LMYGPLGTGFSQSVNDYFDLELDRVNEPT--RPIPSGRLSEKEALWNSIIVLLLAIGLGVW-LGLHIGGERGMVIISSIL  132 (331)
T ss_pred             HHHHHHHHHHHhHHhcceeecccccCCCC--CCCCcCCcCHHHHHHHHHHHHHHHHHHHHH-HHhccccchhHHHHHHHH
Confidence            33445566789999999999999999986  999999999999999999999999887753 332       12 23345


Q ss_pred             HHHHHHHHhcCC----CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchh
Q psy13659         92 FNMVLYTSVYTP----MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPD  166 (306)
Q Consensus        92 ~~~~ly~~~Ys~----lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~ed  166 (306)
                      +++++ .++||.    +||.... +..+|..++ +.+.+++.+..++++   +..++++...++|+...++.++++|+|+
T Consensus       133 ~~l~l-~~~YS~~P~~lKr~~~~g~~~vGl~~~-~~~~~~~~a~~g~~~---~~~~~l~~~~~l~~~~~~~i~d~~D~eg  207 (331)
T PRK12392        133 AGLFV-AYIYSAPPLKLKKNILTSAPAVGFSYG-FITFLSANALFSDIR---PEVVWLAGLNFFMAIALIIMNDFKSVEG  207 (331)
T ss_pred             HHHHH-hhhhcCCchhhhccchhHHHHHHHHHH-HHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHcccchhh
Confidence            56666 789963    7998776 778899987 445666777778877   7777888889999999999999999999


Q ss_pred             HHHcCCccccccCCchhHHH-HHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy13659        167 YSRAGYRMMAVTNPDLCRLT-SLRYT-VALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKES  233 (306)
Q Consensus       167 D~~~G~~tl~v~~G~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~  233 (306)
                      |++.|+||+|+++|++.+.. ...+. +........++..+....+|. .. +..+...+.+.+++|+|
T Consensus       208 D~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~q~~l~r~p  274 (331)
T PRK12392        208 DKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTVLMYF-IL-VGLVLNIVIQIQLYRDP  274 (331)
T ss_pred             HHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH-HH-HHHHHHHHHHHHHHhCh
Confidence            99999999999999975443 33332 222333333444454333332 22 22345566677777655

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=99.96  E-value=6.3e-27  Score=219.43  Aligned_cols=171  Identities=16%  Similarity=0.082  Sum_probs=146.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhcccc--cCcCCCCCCC--CCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH---h
Q psy13659          9 APFEWSSFLICSLGTGLVSSAANAVNQYHE--VPFDSQMSRT--KNRVLVRGVLSPLHALGFALASSAAGTAMLYF---G   81 (306)
Q Consensus         9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D--~~iD~~~~Rt--~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~---~   81 (306)
                      +.++|..+++++++.+++++++|++|||+|  +|.|++ +||  ++||+++|++|++|+..++.++..+++.++..   .
T Consensus        35 ~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~-~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~  113 (296)
T PRK05951         35 RSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHH-ETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLD  113 (296)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc-cccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            568999999999999999999999999999  777776 677  78999999999999999999988877765432   2


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHH
Q psy13659         82 VNGLTAALGLFNMVLYTSVYTP----MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFN  157 (306)
Q Consensus        82 l~~~~~~l~~~~~~ly~~~Ys~----lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~  157 (306)
                      .++....+++++++. .+.||.    +|++..-++.++..+|...++..++..++.++   +..+.......+|+.....
T Consensus       114 ~~~~~l~l~~~~~~~-~~~Yt~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~~~---~~~~~~sl~~~l~~~~il~  189 (296)
T PRK05951        114 RGIGAVTLALLGVFL-WTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGNLS---SPNLLAGVPLGLLMALVLL  189 (296)
T ss_pred             ccHHHHHHHHHHHHH-HHHHcCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHHHHHH
Confidence            366677788888887 889963    56665559999999998888999999999888   7788888888888877788


Q ss_pred             HhhhhcchhHHHcCCccccccCCchhH
Q psy13659        158 ALSWNLRPDYSRAGYRMMAVTNPDLCR  184 (306)
Q Consensus       158 ~~a~~D~edD~~~G~~tl~v~~G~~~~  184 (306)
                      .++++|+|+|+++|+||+|+++|++++
T Consensus       190 ~n~~~D~e~D~~~G~~Tlav~lG~~~a  216 (296)
T PRK05951        190 SNNLRDIEDDERKGIPTLAVIFGRRGA  216 (296)
T ss_pred             HCCCccchhHHHCCCeeeeeeEcHhhH
Confidence            899999999999999999999999765

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.96  E-value=1.2e-27  Score=217.48  Aligned_cols=171  Identities=26%  Similarity=0.285  Sum_probs=143.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy13659          9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAA   88 (306)
Q Consensus         9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~   88 (306)
                      +..++..+....++.++++.++|.+||+.|+|.|+.|+|+|+||+++|++|++++..++..+..+++.+++ ..++....
T Consensus        18 ~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~-~~~~~~~~   96 (257)
T PF01040_consen   18 GPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLAL-LLGPWFLL   96 (257)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHH-hcCchhHH
Confidence            45678888888888899999999999999999999999999999999999999999999999999998874 57888877


Q ss_pred             HHHHHHHHHHHhcC---CCccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcc
Q psy13659         89 LGLFNMVLYTSVYT---PMKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLR  164 (306)
Q Consensus        89 l~~~~~~ly~~~Ys---~lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~  164 (306)
                      +.++..+. .+.|+   .+||++.+ +++++...+ .++..|+.+.+++++   ...+.+....+++.......++++|+
T Consensus        97 ~~~~~~~~-~~~Ys~~~~lk~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~  171 (257)
T PF01040_consen   97 ILLLGFLL-GLLYSPPLRLKRRPLWGELVVALVFG-LLILLGAYAAGGDPP---PPPFLLAIFFFLLIFAIMFFNDIRDI  171 (257)
T ss_pred             HHHHHHHH-HHHHhhhhhhcceeccchhhHHHhhh-HhhhhhhhhcCCccc---HHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            77777777 68999   59999997 788888865 778888888887765   55666665555665555555589999


Q ss_pred             hhHHHcCCccccccCCchhHH
Q psy13659        165 PDYSRAGYRMMAVTNPDLCRL  185 (306)
Q Consensus       165 edD~~~G~~tl~v~~G~~~~~  185 (306)
                      |+|+++|+||+|+++|++...
T Consensus       172 ~~D~~~g~~Tl~v~~G~~~~~  192 (257)
T PF01040_consen  172 EGDRKAGRRTLPVLLGEKKAR  192 (257)
T ss_pred             HHHHHcCCcchHHHHHHHHHH
Confidence            999999999999999986443

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=99.96  E-value=1.4e-26  Score=218.06  Aligned_cols=213  Identities=12%  Similarity=0.066  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHHHHHHH----hhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy13659         16 FLICSLGTGLVSSAANA----VNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGL   91 (306)
Q Consensus        16 ~ll~~l~~~l~~~a~~~----iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~   91 (306)
                      .+...+++++++.++|+    +|||+|+|+|++|+  |+||++||++|+++|..+..++.++|+.+++ ..|+..+.+++
T Consensus        51 ~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~ink--p~rPiasG~ls~~~a~~~~~~~~~lal~la~-~~~~~~~~~~~  127 (308)
T PRK12887         51 NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINK--PHLPLAAGEFSRRQGQRIVIITGILALILAA-LLGPWLLITVG  127 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC--CCCCcCCcccCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHH
Confidence            56777788899999999    99999999999997  7999999999999999999999999999985 68998888888


Q ss_pred             HHHHHHHHhcCC----CccchhH-HHHHHHHHhhhhhhhh----Hhh---ccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659         92 FNMVLYTSVYTP----MKRISIA-NTWVGSVVGAIPPLMG----WAA---CTGSLLDGSGGAFLLSAILFTWQFPHFNAL  159 (306)
Q Consensus        92 ~~~~ly~~~Ys~----lKr~t~~-~~~vg~~~ga~~~l~G----~~a---~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~  159 (306)
                      ++.++ ...||.    +||++.+ |..+....| ..+..|    +.+   .+++++   ...+++++..++|+...+..+
T Consensus       128 ~~~~l-g~~Ys~pP~rlKr~~~~~~~~i~~~~g-~i~~~g~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~l~~  202 (308)
T PRK12887        128 ISLLI-GTAYSLPPIRLKRFPLLAALCIFTVRG-VIVNLGLFLHFQWLLGGSVLIP---PTVWLLTLFVLVFTFAIAIFK  202 (308)
T ss_pred             HHHHH-HHHHcCCchhhcccchhHHHHHHHHHH-HHHHHHHHHHHHHHHhccccCc---HHHHHHHHHHHHHHHHHHHHH
Confidence            88888 899995    9999998 565554444 222222    221   222444   566778888899999999999


Q ss_pred             hhhcchhHHHcCCccccccCCchhHHHH--HHHHHHHHHH--HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCCh
Q psy13659        160 SWNLRPDYSRAGYRMMAVTNPDLCRLTS--LRYTVALLVV--SAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDS  235 (306)
Q Consensus       160 a~~D~edD~~~G~~tl~v~~G~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~  235 (306)
                      +++|+|+||+.|+||+|+++|+++....  ..+.+.....  ..+....+ .+..+.+.+....+..++++.+..+.+++
T Consensus       203 di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (308)
T PRK12887        203 DIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPT-VNPAFLIVSHLILLALLWWRSQRVDLQDK  281 (308)
T ss_pred             hccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence            9999999999999999999998754422  1111111111  11112222 23445444444445555666666665555


Q ss_pred             HH
Q psy13659        236 SS  237 (306)
Q Consensus       236 ~~  237 (306)
                      ++
T Consensus       282 ~~  283 (308)
T PRK12887        282 QA  283 (308)
T ss_pred             hH
Confidence            33

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=1.5e-26  Score=215.30  Aligned_cols=240  Identities=16%  Similarity=0.130  Sum_probs=170.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy13659         12 EWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGL   91 (306)
Q Consensus        12 ~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~   91 (306)
                      ++.......+++++.++++|++|||+|+|.|++|+|  +||.+|++...+.++.+..+...++..+.....|+.++.+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~--~R~~~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~  111 (285)
T PRK12872         34 GLPISWLLLLITFLIAAAVYIINYLTDLEEDIINKP--ERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFI  111 (285)
T ss_pred             cChhHHHHHHHHHHHHHHHHHhhhhcCCchhhcCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            333466777889999999999999999999999985  788886555555555444444444444432234788888888


Q ss_pred             HHHHHHHHhcCC-----CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcch
Q psy13659         92 FNMVLYTSVYTP-----MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRP  165 (306)
Q Consensus        92 ~~~~ly~~~Ys~-----lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e  165 (306)
                      ++.+. .+.||.     +||.+.+ |+.+|...|..+++.++++.++.++   ...+..+...+++.......++++|+|
T Consensus       112 ~~~~~-~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~fl~~~~~~~~~d~~D~e  187 (285)
T PRK12872        112 IPLIL-GILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTIF---SLLLLYAVFIFLKSFIREIVFDIKDIE  187 (285)
T ss_pred             HHHHH-HHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcccccc---hHHHHHHHHHHHHHHHHHHHHhcccch
Confidence            88877 889985     5776767 8999999998998989888877666   566666667777777777788999999


Q ss_pred             hHHHcCCccccccCCchhHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHH
Q psy13659        166 DYSRAGYRMMAVTNPDLCRL-TSLRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFYKESDSSSSRKLFRF  244 (306)
Q Consensus       166 dD~~~G~~tl~v~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~F~~  244 (306)
                      +|+++|+||+|+++|+++.+ .............+.+...+..++++. ..++...+..+..+++.+.+++++..+....
T Consensus       188 ~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (285)
T PRK12872        188 GDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLL-VLLLLLAYVLYYIIKLFAADDKKDLLYLSLL  266 (285)
T ss_pred             hHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH-HHHHHHHHHHHHHHHHHhcccccchhHHHHH
Confidence            99999999999999986433 333333333344445555665444443 3444456666677888887777777666665


Q ss_pred             HhHHHHHHHHHHHH
Q psy13659        245 SLLHLPALMILLLI  258 (306)
Q Consensus       245 s~~~~~~l~~~~l~  258 (306)
                      ...+...-.++++.
T Consensus       267 ~~~~~~~g~~~~~~  280 (285)
T PRK12872        267 DKEHMLLGLISMLL  280 (285)
T ss_pred             hHHHHHHHHHHHHH
Confidence            55555544444444

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.95  E-value=6e-26  Score=210.14  Aligned_cols=220  Identities=11%  Similarity=-0.059  Sum_probs=156.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy13659         12 EWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGL   91 (306)
Q Consensus        12 ~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~   91 (306)
                      .+.+.+++++.+++..+++|++|||+|+|+||+|+  |+||+|||++|+++|..++..+.++++.+..     .+ ...+
T Consensus        44 ~~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~--P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~-----l~-~i~i  115 (299)
T PRK13592         44 IGIQEFVGVFTVFGFWMILRIADDFKDYETDRRLF--PHRALPSGRVKKKDLAIALSFIVAVSVLLNV-----LF-MNNV  115 (299)
T ss_pred             CchHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcC--CCCCCCcCCCCHHHHHHHHHHHHHHHHHHHH-----HH-HHHH
Confidence            34567777788889999999999999999999998  7999999999999999999999766666553     22 2222


Q ss_pred             HHHHHHHHhc-----CC-CccchhH-HHHHHHHHhhhhhhhh---------HhhccCCCCCcchHHHHHHHHHHHhHhHH
Q psy13659         92 FNMVLYTSVY-----TP-MKRISIA-NTWVGSVVGAIPPLMG---------WAACTGSLLDGSGGAFLLSAILFTWQFPH  155 (306)
Q Consensus        92 ~~~~ly~~~Y-----s~-lKr~t~~-~~~vg~~~ga~~~l~G---------~~a~~g~~~~~~~~~~~l~~~~~~w~~~~  155 (306)
                      .+.+. .++|     +. +||.+.. |+.++...| .+++.|         ..+. |..... ...+++++..|+-+...
T Consensus       116 ~~~~i-~~lY~~lm~a~~~K~~~l~gNl~Va~ltg-~~f~~g~~~~~~~fg~~~~-g~~~~~-~~~~~l~l~afl~~l~r  191 (299)
T PRK13592        116 GWFLF-LYIYGTLMSFWFFKRDKIQNSLPLALVTH-NPVMMILNLYTISFVCYKY-NLPLLS-LPTVLLAFTMYFPSLIW  191 (299)
T ss_pred             HHHHH-HHHHHHHHHHHHHcccCCCcchhhhhhcc-chhhhchhhhhhhhhhhhc-ccchhh-HHHHHHHHHHHHHHHHH
Confidence            23333 3455     66 8998888 999999987 555333         2222 222100 11356667777778899


Q ss_pred             HHHhhhhcchhHHHcCCccccccCCchhH-HHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy13659        156 FNALSWNLRPDYSRAGYRMMAVTNPDLCR-LTSLRYTVALLVVSAAGPL-LDVTNVWFALESIPLNAYFTYLAYKFYKES  233 (306)
Q Consensus       156 ~~~~a~~D~edD~~~G~~tl~v~~G~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~a~~~~~~~  233 (306)
                      +...+++| |||++ |.+|+|+++|.+.+ +......+..+..+.+++. .|..++   +..++..+++++.++++.|+|
T Consensus       192 EI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp~~~~g~~g~---~~l~~~~~~~l~~~~~~lk~p  266 (299)
T PRK13592        192 EVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFALLWNISHVGV---VVLVLNVIWMTVQFEQFIKSP  266 (299)
T ss_pred             HHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHHHHHhhhhHH---HHHHHHHHHHHHHHHHHhcCC
Confidence            99999999 78885 59999999997543 3334444444556777776 665565   333455778888889999988


Q ss_pred             Ch----HHHHHHHHHHhHH
Q psy13659        234 DS----SSSRKLFRFSLLH  248 (306)
Q Consensus       234 ~~----~~~~~~F~~s~~~  248 (306)
                      ++    ++..|..+.+...
T Consensus       267 ~~~~~~~~~~~~~ki~~~l  285 (299)
T PRK13592        267 TRFNIRERVERYTYITETT  285 (299)
T ss_pred             CcchhhHHHHHHHHHHHHH
Confidence            66    6777777766643

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=3e-25  Score=206.12  Aligned_cols=223  Identities=14%  Similarity=0.071  Sum_probs=149.2

Q ss_pred             EEEecCCCCCH--HHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHH----HH
Q psy13659          3 GYAMAPAPFEW--SSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAG----TA   76 (306)
Q Consensus         3 G~~la~g~~~~--~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~g----l~   76 (306)
                      |+..+.+.+||  ..+.+.+......+...|.+|||+|+|+|++|+||  ||+++|++|++++..+...+...+    +.
T Consensus        34 G~~~~g~~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~--~~i~~G~is~~~~~~~~~~~~~~~~~~~l~  111 (292)
T PRK13595         34 GVWLTGHLYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRK--GGWQGARLSPGEVRPLLRAVLLLNAPFLLY  111 (292)
T ss_pred             HHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC--CCCCcCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            34344345776  55666677778888899999999999999999974  888899999999988766555443    33


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhcCC----CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHh
Q psy13659         77 MLYFGVNGLTAALGLFNMVLYTSVYTP----MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTW  151 (306)
Q Consensus        77 l~~~~l~~~~~~l~~~~~~ly~~~Ys~----lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w  151 (306)
                      +. +..|+.+..+.+.+.++ .+.||.    +|+++.+ ++.. ..+| .|...| .++.|...     .+......++|
T Consensus       112 la-~~l~~~~~~l~~v~~~l-~~~YS~pPlRlK~rp~l~~l~~-~~~g-~p~~~~-~~~~g~~~-----~~~~l~a~~~w  181 (292)
T PRK13595        112 LA-LLLPPAATLLLLLYAAL-FVGYSLPPLRFKARPFLDGLSN-AAYA-LPLALP-ALALGAPV-----PWPPLLALMAW  181 (292)
T ss_pred             HH-HHHhHHHHHHHHHHHHH-HHHHccCccchhcCcchhHHHH-HHHH-HHHHHH-HHHcCCcc-----hHHHHHHHHHH
Confidence            44 35788887777777777 889983    7777777 4544 3343 454454 44555433     22333566789


Q ss_pred             HhHHHHHhhhhcchhHHHcCCccccccCCchhHHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13659        152 QFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTS--LRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKF  229 (306)
Q Consensus       152 ~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~  229 (306)
                      ....+..+++||+|+||+.|+||+|+++|+++..+.  ..+.+..+.+    ...   ++...++   +.+.....+.++
T Consensus       182 ~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~----~~~---~~~~~~~---~~~~~~~~~~~~  251 (292)
T PRK13595        182 SVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALL----WPV---SRLTALA---LWLICGGMALAL  251 (292)
T ss_pred             HHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHH----HHh---cchHHHH---HHHHHHHHHHHH
Confidence            999999999999999999999999999998643322  1222222211    111   1222221   122333445567


Q ss_pred             hccCChHHHHHHHHHHhH
Q psy13659        230 YKESDSSSSRKLFRFSLL  247 (306)
Q Consensus       230 ~~~~~~~~~~~~F~~s~~  247 (306)
                      +++++++++.|..+.+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~  269 (292)
T PRK13595        252 WRRPTPETAHRLYPLSIV  269 (292)
T ss_pred             hcCCCHHHHhccchHHHH
Confidence            788888888776665444

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.93  E-value=6.5e-24  Score=200.72  Aligned_cols=244  Identities=16%  Similarity=0.098  Sum_probs=174.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhccccc--CcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH---hhH
Q psy13659          9 APFEWSSFLICSLGTGLVSSAANAVNQYHEV--PFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF---GVN   83 (306)
Q Consensus         9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~--~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~---~l~   83 (306)
                      +.+++..+++++++.++.++++|++|||+|.  +.|++..++++||+++|.+|++++...+..+..++++++.+   ..+
T Consensus        34 ~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g  113 (317)
T PRK13387         34 KIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTS  113 (317)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4679988999999999999999999999994  66665555678999999999999999999999888875442   457


Q ss_pred             HHHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHH----------------
Q psy13659         84 GLTAALGLFNMVLYTSVYTP----MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFL----------------  143 (306)
Q Consensus        84 ~~~~~l~~~~~~ly~~~Ys~----lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~----------------  143 (306)
                      +....+++++++. .+.||.    +||+..-++.++..+|...+.++++..++..+   +..+.                
T Consensus       114 ~~~l~igl~g~~~-~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~~~---~~~~~~~~~~~~~~~~~~~~~  189 (317)
T PRK13387        114 WLLLVIGLICFAI-GILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNTIT---IESLLFQGEMFTIQGNLIAII  189 (317)
T ss_pred             HHHHHHHHHHHHH-hhhhcCCCcccccCccHHHHHHHHHHHHHHHHHHHHhcCCCc---hHHHHhcccchhhcchhHHHH
Confidence            7777888888888 889985    78888669999999998888888888888876   44433                


Q ss_pred             ----HHHHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHHHHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHH
Q psy13659        144 ----LSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVAL-LVVSAAGPLLDVTNVWFALESIPL  218 (306)
Q Consensus       144 ----l~~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~  218 (306)
                          .++...+.+..-...++++|+|+|+++|.||+|+++|++.+++........ ..........|..++++++.  .+
T Consensus       190 ~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~~ll~--ll  267 (317)
T PRK13387        190 AIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYISPWALLS--FL  267 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HH
Confidence                555666666566778899999999999999999999997554322111111 11223344556555555432  34


Q ss_pred             HHHHHHHHHHHh-cc-CChHHHHHHH----HHHhHHHHHHHHHHHH
Q psy13659        219 NAYFTYLAYKFY-KE-SDSSSSRKLF----RFSLLHLPALMILLLI  258 (306)
Q Consensus       219 ~~~~~~~a~~~~-~~-~~~~~~~~~F----~~s~~~~~~l~~~~l~  258 (306)
                      ..+......|.+ +. +++++.+...    +.+..+..++.++.++
T Consensus       268 ~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~ll  313 (317)
T PRK13387        268 TLRKPISNLQSFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSASLLI  313 (317)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666665544 33 4444444333    3344444444454444

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.93  E-value=2.5e-23  Score=193.91  Aligned_cols=232  Identities=17%  Similarity=0.063  Sum_probs=165.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhccccc--CcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh---hH
Q psy13659          9 APFEWSSFLICSLGTGLVSSAANAVNQYHEV--PFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG---VN   83 (306)
Q Consensus         9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~--~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~---l~   83 (306)
                      +.++|..+++++++.+++++++|.+|||+|.  +.|+..+.+++|++++|.+|++++...+..+.+++++++.+.   .+
T Consensus        23 ~~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~  102 (284)
T TIGR00751        23 HAFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLAA  102 (284)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5789999999999999999999999999995  567755556799999999999999999988888777665432   23


Q ss_pred             H------HHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHh
Q psy13659         84 G------LTAALGLFNMVLYTSVYTP----MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQF  153 (306)
Q Consensus        84 ~------~~~~l~~~~~~ly~~~Ys~----lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~  153 (306)
                      +      ....++.++++. .+.||.    +|++..-++.++..+|.++++.++++++++++   +..++..+...+.+.
T Consensus       103 ~~~~~~~~~l~lg~~~~~~-~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~~~---~~~ll~sl~~g~l~~  178 (284)
T TIGR00751       103 PNLSDLFWFIALGALCIAA-AITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHRVD---WVGILPAVATGLLAC  178 (284)
T ss_pred             cchhhhHHHHHHHHHHHHH-hHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHH
Confidence            3      334677777777 789985    56666669999999999999999999999998   777777776777777


Q ss_pred             HHHHHhhhhcchhHHHcCCccccccCCchhHHHHHHHHHHHHH-HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-c
Q psy13659        154 PHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVALLV-VSAAGPLLDVTNVWFALESIPLNAYFTYLAYKFY-K  231 (306)
Q Consensus       154 ~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~~-~  231 (306)
                      .....++++|+|+|+++|+||+|+++|+++++..........- ..+.....+..+++. +. .++.++......|.. +
T Consensus       179 ~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~~-ll-~ll~lPl~~~~~~~~~~  256 (284)
T TIGR00751       179 AVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWWC-VL-FLLAAPLLLKAAGPVRS  256 (284)
T ss_pred             HHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHHH-HH-HHHHHHHHHHHHHHHHh
Confidence            7777889999999999999999999999765432211111111 111112223333322 22 233455555555544 3


Q ss_pred             cCChHHHHHHHHHHh
Q psy13659        232 ESDSSSSRKLFRFSL  246 (306)
Q Consensus       232 ~~~~~~~~~~F~~s~  246 (306)
                      .+++++-....+.+.
T Consensus       257 ~~~~~~l~~~l~~t~  271 (284)
T TIGR00751       257 GRGPRELRPVLRDTG  271 (284)
T ss_pred             cCCHHHHHHHHHHHH
Confidence            455555555444333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PLN02878 homogentisate phytyltransferase

Probab=99.91  E-value=1.4e-22  Score=186.39  Aligned_cols=167  Identities=14%  Similarity=0.046  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy13659         14 SSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFN   93 (306)
Q Consensus        14 ~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~~   93 (306)
                      ..++...++..++...-.-+|||+|+|+||.|+  |+||||||++|+++|+.+...+.++|+.+++ .+|+.+...++..
T Consensus        23 ~~~l~~~~~~l~~niyivglNd~~D~EIDkINk--P~rPIpSG~iS~~~a~~~~~~~~~lg~~la~-~~g~~~l~~al~~   99 (280)
T PLN02878         23 TGLLEALVPALLMNIYIVGLNQLYDIEIDKVNK--PYLPLASGEFSVATGVAIVTSFAIMSFGMGW-IVGSWPLFWALFV   99 (280)
T ss_pred             HHHHHHHHHHHhhhhheechhhhhhhcccccCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHH
Confidence            445667778888888888999999999999999  7999999999999999999999999999985 5777655544443


Q ss_pred             H-HHHHHhcCC------CccchhHHHHHHHHHhhhhhhhhHhhc------cCCCCCcchHHHHHHHHHHHhHhHHHHHhh
Q psy13659         94 M-VLYTSVYTP------MKRISIANTWVGSVVGAIPPLMGWAAC------TGSLLDGSGGAFLLSAILFTWQFPHFNALS  160 (306)
Q Consensus        94 ~-~ly~~~Ys~------lKr~t~~~~~vg~~~ga~~~l~G~~a~------~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a  160 (306)
                      . ++ ...|+.      +||............++.-+-.||++.      ++....+ ...+.....+.+......+.++
T Consensus       100 ~~~l-g~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~-~~~~~~~~f~~~f~~~i~i~KD  177 (280)
T PLN02878        100 SFVL-GTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFT-RPLIFATAFMCFFSVVIALFKD  177 (280)
T ss_pred             HHHH-HHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccc-hhHHHHHHHHHHHHHHHHHHhh
Confidence            3 44 678883      577666521111111112222233322      2211100 2223222233334445668889


Q ss_pred             hhcchhHHHcCCccccccCCchhHH
Q psy13659        161 WNLRPDYSRAGYRMMAVTNPDLCRL  185 (306)
Q Consensus       161 ~~D~edD~~~G~~tl~v~~G~~~~~  185 (306)
                      .+|+|+||+.|+||+|+++|++...
T Consensus       178 i~DieGD~~~Gi~Tlpv~lG~~~~~  202 (280)
T PLN02878        178 IPDVEGDRIFGIRSFSVRLGQKRVF  202 (280)
T ss_pred             CcCchhHHHCCCceechhhChHHHH
Confidence            9999999999999999999986433

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.91  E-value=2.6e-22  Score=186.55  Aligned_cols=173  Identities=13%  Similarity=0.112  Sum_probs=121.9

Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHHH-HHhhcccccCcCCCCCCCCCCcccCCCCCHHHH----HHHHHHHHH-HHHH
Q psy13659          3 GYAMAPAPFEWSSFLICSLGTGLVSSAA-NAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHA----LGFALASSA-AGTA   76 (306)
Q Consensus         3 G~~la~g~~~~~~~ll~~l~~~l~~~a~-~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A----~~~~~~l~~-~gl~   76 (306)
                      |+++|.+.++| .+++..+.....+..+ |.+|||+|+|.|+.|+||..|.   |.+|++|.    +.+..+... .++.
T Consensus        23 g~~la~~~~~~-~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~---g~i~~~~~~~~~~~~~~~~~~~~~l~   98 (282)
T PRK13105         23 AYLLAGGEIDW-LFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVE---GAVLDRAMHRTTLWASVVTTVPFLVV   98 (282)
T ss_pred             HHHHHCCCCCh-HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCC---CccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566555666 4444444333333333 3559999999999999987764   88999987    333333333 2333


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhcCC----CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHh
Q psy13659         77 MLYFGVNGLTAALGLFNMVLYTSVYTP----MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTW  151 (306)
Q Consensus        77 l~~~~l~~~~~~l~~~~~~ly~~~Ys~----lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w  151 (306)
                      +. ...|+.++.++.++++. .+.||.    +|++... ++.....++ .+.+.|.+..++.++   +..+++....++|
T Consensus        99 l~-~~~~~~~~~l~~~ai~~-~~~YS~~p~rlk~~gl~d~~t~~~~f~-~~~v~G~~~~~~~~~---~~~~l~~~~~~~~  172 (282)
T PRK13105         99 LL-AVGSWASGLVLAVSVFA-VVAYSAPGLRFKERPFLDSLTSSTHFV-SPALYGLVLAGAPFT---AALWAVLAAFFLW  172 (282)
T ss_pred             HH-HHhhHHHHHHHHHHHHH-HHHhcCCCccccccchHHHHHHHHHHH-HHHHHHHHHhhcccc---HHHHHHHHHHHHH
Confidence            32 23478888888888888 889996    6666776 443444433 235555555577777   6778888889999


Q ss_pred             HhHHHHHhhhhcchhHHHcCCccccccCCchhHH
Q psy13659        152 QFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL  185 (306)
Q Consensus       152 ~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~  185 (306)
                      ....+..+++||.|+||++|+||+|+++|+++..
T Consensus       173 ~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~  206 (282)
T PRK13105        173 GMASHAFGAVQDVVADREAGIASIATVLGARRTV  206 (282)
T ss_pred             HHHHHHHHhCcchHhHHHcCCccchHHhcHHHHH
Confidence            9999999999999999999999999999987544

>PRK08238 hypothetical protein; Validated

Probab=99.90  E-value=6.4e-22  Score=196.29  Aligned_cols=130  Identities=21%  Similarity=0.216  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy13659         13 WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLF   92 (306)
Q Consensus        13 ~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~   92 (306)
                      +...++++++++++++++|++||++|+|+||+|+||++||+|||++|+++|+.++.+++++|+.+++ .+|+.++.+ .+
T Consensus       225 ~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~-~l~~~~~~~-~~  302 (479)
T PRK08238        225 LLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALAL-ALGPAFLLV-LL  302 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH-HH
Confidence            4466788889999999999999999999999999999999999999999999999999999998885 578855444 44


Q ss_pred             HHHHHHHhcCC-CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHH
Q psy13659         93 NMVLYTSVYTP-MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFT  150 (306)
Q Consensus        93 ~~~ly~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~  150 (306)
                      +.+.+.++||. +||++++ ++++|+.+ ++++++|+.+.+  ++   +..|++++.+++
T Consensus       303 ~~~~~~~~Ys~~lKr~~~~~~~~la~~~-~lr~~~G~~a~~--~~---~s~wll~~~~~~  356 (479)
T PRK08238        303 AYLALTLAYSLRLKRKVLVDVLTLAALY-TLRIIAGAAAIG--VA---LSFWLLAFSMFF  356 (479)
T ss_pred             HHHHHHHHhhHHhcCCccccchHHHHHH-HHHHHHHHHHhc--cC---HHHHHHHHHHHH
Confidence            55555899998 9999999 66777776 699999998865  45   667776554433

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.89  E-value=8.1e-21  Score=175.98  Aligned_cols=242  Identities=19%  Similarity=0.120  Sum_probs=178.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhcccc--cCcCC--CCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH---hh
Q psy13659         10 PFEWSSFLICSLGTGLVSSAANAVNQYHE--VPFDS--QMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF---GV   82 (306)
Q Consensus        10 ~~~~~~~ll~~l~~~l~~~a~~~iND~~D--~~iD~--~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~---~l   82 (306)
                      .+++...++++++..+++.+.|..|||+|  +..|.  .++++.++-+.+.+++++.++.+.+.+...+.+++..   ..
T Consensus        40 ~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s  119 (303)
T COG1575          40 SFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALS  119 (303)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            58899999999999999999999999999  46665  6667789999999999999998888887766655542   34


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC-Cccchh---HHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHH
Q psy13659         83 NGLTAALGLFNMVLYTSVYTP-MKRISI---ANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNA  158 (306)
Q Consensus        83 ~~~~~~l~~~~~~ly~~~Ys~-lKr~t~---~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~  158 (306)
                      +|..+.+|+++++. .+.||. .|+..+   -++.+|.++|.+.++++++..+++++   +..++.++.+.+-+..-..+
T Consensus       120 ~~~~l~lG~l~~~~-g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~~~---~~~ll~slp~gil~~~Il~a  195 (303)
T COG1575         120 DWLVLLLGLLCIAA-GILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLS---WAILLPSLPVGILIANILLA  195 (303)
T ss_pred             hhHHHHHHHHHHHh-eeeeccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHHHHHHHh
Confidence            66667788888888 889998 566644   38999999999999999999999999   88888888777777777788


Q ss_pred             hhhhcchhHHHcCCccccccCCchhHHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-hccCCh
Q psy13659        159 LSWNLRPDYSRAGYRMMAVTNPDLCRLTS--LRYTVALLVVSAAGPLLDVTNVWFALESIPLNAYFTYLAYKF-YKESDS  235 (306)
Q Consensus       159 ~a~~D~edD~~~G~~tl~v~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~a~~~-~~~~~~  235 (306)
                      ++++|+|+|+|+|.+|+||+.|++..+..  ..+..+.+. .+....++...+++++.  ++.++......|. .+++.+
T Consensus       196 NNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~-~~~~~i~~~~~~~~ll~--ll~~Pl~ir~~r~v~~~~~~  272 (303)
T COG1575         196 NNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLA-IVIFVILGLFPVWGLLF--LLALPLAIRAARPVRQNQVP  272 (303)
T ss_pred             cccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHH-HHHHHHHHhchHHHHHH--HHHHHHHHHHHHHHHhccCc
Confidence            89999999999999999999999754422  222222221 22223445445555332  2345666666554 444433


Q ss_pred             ----HHHHHHHHHHhHHHHHHHHHHHH
Q psy13659        236 ----SSSRKLFRFSLLHLPALMILLLI  258 (306)
Q Consensus       236 ----~~~~~~F~~s~~~~~~l~~~~l~  258 (306)
                          ..++..-+.+...-.++++++++
T Consensus       273 ~~~~p~l~~~~~~~~~~~~l~~~~i~~  299 (303)
T COG1575         273 ATLVPMLKNTVKANLLWNLLLAVGILL  299 (303)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                34555566666666666666655

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.89  E-value=1.1e-20  Score=177.71  Aligned_cols=170  Identities=15%  Similarity=-0.011  Sum_probs=141.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhccccc--CcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH---hhH
Q psy13659          9 APFEWSSFLICSLGTGLVSSAANAVNQYHEV--PFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF---GVN   83 (306)
Q Consensus         9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~--~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~---~l~   83 (306)
                      +.++|..+++++++..+.++++|.+|||+|.  ..|+..+    +..+++..++++....+..+.++++.++.+   ..+
T Consensus        43 ~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~----~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g  118 (304)
T PRK07419         43 GVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKF----HSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSD  118 (304)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc----cCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4689999999999999999999999999995  5888522    234456667999988888888877766543   246


Q ss_pred             HHHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659         84 GLTAALGLFNMVLYTSVYTP----MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL  159 (306)
Q Consensus        84 ~~~~~l~~~~~~ly~~~Ys~----lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~  159 (306)
                      +....++.++++. .+.||.    +|++..-++.++..+|.+++++++++.+|+++   +..+...+...+.+..-...+
T Consensus       119 ~~~l~ig~~g~~~-~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv~t~~~~---~~~~~~sl~~gll~~~IL~~N  194 (304)
T PRK07419        119 WTVLGLVLLCCFL-GYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPSWS---LIPLAASIILGLATSLILFCS  194 (304)
T ss_pred             HHHHHHHHHHHHH-hheccCCCcccCCCCchHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHc
Confidence            7777788888888 889974    78888779999999999999999999999988   777887777777776777788


Q ss_pred             hhhcchhHHHcCCccccccCCchhHHH
Q psy13659        160 SWNLRPDYSRAGYRMMAVTNPDLCRLT  186 (306)
Q Consensus       160 a~~D~edD~~~G~~tl~v~~G~~~~~~  186 (306)
                      +++|+|+|+++|+||+|+++|++.+++
T Consensus       195 n~rD~e~D~~~Gk~TL~v~lG~~~a~~  221 (304)
T PRK07419        195 HFHQVEDDLAAGKRSPIVRLGTKRGAQ  221 (304)
T ss_pred             CCcchhhHHHcCCcceeeeechHhHHH
Confidence            999999999999999999999976553

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.89  E-value=5e-21  Score=179.07  Aligned_cols=120  Identities=23%  Similarity=0.174  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy13659         13 WSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLF   92 (306)
Q Consensus        13 ~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~   92 (306)
                      +...++.+++++++++++|++||++|+|+||+|+|||+||+|||++|+++|+.++.++.++|+.+++ .+|+.++.+.+ 
T Consensus        45 ~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~la~-~l~~~~~~~~~-  122 (295)
T PRK12324         45 LLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAY-LLSPKLALVLL-  122 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-
Confidence            4456777888889999999999999999999999999999999999999999999999999998885 57888776654 


Q ss_pred             HHHHHHHhcCC-CccchhH-HHHHHHHHhhhhhhhhHhhccCCCC
Q psy13659         93 NMVLYTSVYTP-MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLL  135 (306)
Q Consensus        93 ~~~ly~~~Ys~-lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~  135 (306)
                      +.+.+.++||. +||++.. ++.++..+ .++++.|..+.+.+++
T Consensus       123 ~~~~~~~~Ys~~lK~~~~~d~l~va~~~-~lr~~~G~~a~~~~~s  166 (295)
T PRK12324        123 VYLVLNLAYSFKLKHQPVLDVFCIASGF-VLRAIAGGVAIGVPLS  166 (295)
T ss_pred             HHHHHHHHhhHHhcCCchhhHHHHHHHH-HHHHHHHHHHhCCCcc
Confidence            44445899999 8999998 56778776 4899999988875543

>PLN02922 prenyltransferase

Probab=99.88  E-value=2.3e-20  Score=176.26  Aligned_cols=169  Identities=14%  Similarity=0.007  Sum_probs=136.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhcccc--cCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHh----h
Q psy13659          9 APFEWSSFLICSLGTGLVSSAANAVNQYHE--VPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFG----V   82 (306)
Q Consensus         9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D--~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~----l   82 (306)
                      +.++|..+++++++.++.++++|.+|||+|  +..|+.++.++.|+.-    |+++....+..+.++++...++.    .
T Consensus        46 g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~----s~~~v~~~~~~~~~la~~g~~ll~~~~~  121 (315)
T PLN02922         46 GLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVG----SRRGVLAAAIGCLALGAAGLVWASLVAG  121 (315)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCccc----CHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            578999999999999999999999999999  5788865433445533    99999888888887777543322    2


Q ss_pred             HHHHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHhhhhhhhhHhhccC----------CCCCcchHHHHHHHHH
Q psy13659         83 NGLTAALGLFNMVLYTSVYTP----MKRISIANTWVGSVVGAIPPLMGWAACTG----------SLLDGSGGAFLLSAIL  148 (306)
Q Consensus        83 ~~~~~~l~~~~~~ly~~~Ys~----lKr~t~~~~~vg~~~ga~~~l~G~~a~~g----------~~~~~~~~~~~l~~~~  148 (306)
                      ++....+++++++. .+.||.    +|++..-++.++..+|.+++.+.++++++          .++   +..++..+..
T Consensus       122 ~~~~l~iG~~g~~~-~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~---~~~~l~slp~  197 (315)
T PLN02922        122 NIRVILLLAAAILC-GYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLT---PTVLSASVLV  197 (315)
T ss_pred             ChHHHHHHHHHHHH-HHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHhccccccccccccccc---HHHHHHHHHH
Confidence            56677788888888 899984    78877779999999998888888888877          234   6667778888


Q ss_pred             HHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHH
Q psy13659        149 FTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL  185 (306)
Q Consensus       149 ~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~  185 (306)
                      .+++..--..++++|+|+|+++|+||+||++|++.++
T Consensus       198 gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~  234 (315)
T PLN02922        198 GLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGS  234 (315)
T ss_pred             HHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHH
Confidence            8888777788899999999999999999999997554

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.88  E-value=1.9e-20  Score=174.62  Aligned_cols=170  Identities=12%  Similarity=-0.047  Sum_probs=138.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhcccc--cCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH---hhH
Q psy13659          9 APFEWSSFLICSLGTGLVSSAANAVNQYHE--VPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYF---GVN   83 (306)
Q Consensus         9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D--~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~---~l~   83 (306)
                      +.+++..+++++++..+.++++|.+|||+|  ++.|+.+..++.|..    .|+++....+..+..+++.++.+   ..+
T Consensus        30 ~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~----~~~~~v~~~~~~~~~ia~~~g~~L~~~~~  105 (285)
T TIGR02235        30 GVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLT----GSRSLVFWLANFFLLIGLVGIAALSWRWQ  105 (285)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCccccc----CcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            568999999999999999999999999999  466885433344444    45788887777777777665542   245


Q ss_pred             HHHHHHHHHHHHHHHHhcCC----CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659         84 GLTAALGLFNMVLYTSVYTP----MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL  159 (306)
Q Consensus        84 ~~~~~l~~~~~~ly~~~Ys~----lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~  159 (306)
                      +....++.++++. .+.||.    +|++..-++.++..+|.++++.+++..+++++   +..++..+...+.+..-...+
T Consensus       106 ~~~l~lg~~g~~~-~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~~~---~~~~l~sl~~gl~~~~iL~~N  181 (285)
T TIGR02235       106 ITVLALVGLCCFL-GYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQSFS---LIPWKASILVGLATTLILFCS  181 (285)
T ss_pred             HHHHHHHHHHHHH-HHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCcCc---HHHHHHHHHHHHHHHHHHHhc
Confidence            6667788888888 889984    78877779999999999999999999999998   788888888878877777888


Q ss_pred             hhhcchhHHHcCCccccccCCchhHHH
Q psy13659        160 SWNLRPDYSRAGYRMMAVTNPDLCRLT  186 (306)
Q Consensus       160 a~~D~edD~~~G~~tl~v~~G~~~~~~  186 (306)
                      +++|+|+|+++|.||+||++|++.+.+
T Consensus       182 n~rD~e~D~~~Gk~TL~v~lG~~~a~~  208 (285)
T TIGR02235       182 HFHQVEDDLAHGKRSPVVRLGTKLAAK  208 (285)
T ss_pred             CCccchhHHHcCCcceeheecHHhHHH
Confidence            999999999999999999999976543

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.88  E-value=1.4e-20  Score=175.15  Aligned_cols=144  Identities=19%  Similarity=0.143  Sum_probs=100.6

Q ss_pred             HHhhcccccCcCCCCCCCC-CCccc-CCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcC---C-C
Q psy13659         31 NAVNQYHEVPFDSQMSRTK-NRVLV-RGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTSVYT---P-M  104 (306)
Q Consensus        31 ~~iND~~D~~iD~~~~Rt~-~RPL~-sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~~~~ly~~~Ys---~-l  104 (306)
                      |.+|||+|+|.||+|+||+ +||++ +|+.+...+..   ....+++.+.. ..++....+.+.. +.+.+.||   . +
T Consensus        62 y~iND~~D~D~Dr~~prk~~~r~~~~s~~~~~~~~~~---l~~~l~l~l~~-~~~~~~~~~ll~~-i~~~~~YS~pP~rl  136 (282)
T PRK12875         62 YGVNDVFDADTDELNPKKDREREVRYRGDRRVLVAVA---LSGALALAFLL-VLPPAAWPALLAF-LVLSVEYSAPPLRF  136 (282)
T ss_pred             hcchhhhhhhccccCCCccCCCCccHHHHHHHHHHHH---HHHHHHHHHHH-HhhHHHHHHHHHH-HHHHHHHcCCCccc
Confidence            4479999999999999988 68888 54443333322   12333343332 2344333233333 44488998   3 8


Q ss_pred             ccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhH
Q psy13659        105 KRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCR  184 (306)
Q Consensus       105 Kr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~  184 (306)
                      |+++..+......+ .+|++++|++++|+++   +.  .+++..++|+.+.+..+++||+|+|+++|+||+|+++|+++.
T Consensus       137 k~~p~~~~~~~g~~-~~~~~~~y~~~tg~~~---~~--~l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a  210 (282)
T PRK12875        137 KTTPVLDSLSNGLY-ILPGVAAYALVSGSLP---PL--LAVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRT  210 (282)
T ss_pred             hhccHHHHHHHHHH-HHHHHHHHHHHcCCCc---HH--HHHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhH
Confidence            88887776553333 4888999999999876   33  345556899999888899999999999999999999998744


Q ss_pred             H
Q psy13659        185 L  185 (306)
Q Consensus       185 ~  185 (306)
                      +
T Consensus       211 ~  211 (282)
T PRK12875        211 Y  211 (282)
T ss_pred             H
Confidence            3

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.85  E-value=8.6e-20  Score=170.48  Aligned_cols=159  Identities=15%  Similarity=0.048  Sum_probs=110.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy13659          8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTA   87 (306)
Q Consensus         8 ~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~   87 (306)
                      +.++++...    +.+.+...++|++|||+|+|+|+.|+  |+||.+    |++.++.++.+..++|+.+++ ..|+.. 
T Consensus        56 g~~~~~~~~----~~~~L~~~s~~~iNd~~D~eiD~IN~--P~r~~~----s~~~a~~ls~la~llGl~La~-~~g~~l-  123 (307)
T PRK13591         56 GLQSSILTC----IAGGLIIYSVYTLDRALDSEEDAVNR--SELIGS----NKKIGLLVSLLAFLLGTYILA-MDGMLL-  123 (307)
T ss_pred             CCCcchHHH----HHHHHHHHHHHHHhhhccchhhhccC--cccccc----CHHHHHHHHHHHHHHHHHHHH-HHhHHH-
Confidence            344565433    34557789999999999999999997  699997    899999999999999999885 567643 


Q ss_pred             HHHHHHHHHHHHhcCC----------CccchhH-HHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHH
Q psy13659         88 ALGLFNMVLYTSVYTP----------MKRISIA-NTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHF  156 (306)
Q Consensus        88 ~l~~~~~~ly~~~Ys~----------lKr~t~~-~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~  156 (306)
                       +++++.+. .+.|+.          +|+.+.+ |+.+|..+|.+.+...... +++.    ......++....-.....
T Consensus       124 -l~ll~~l~-g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~-~~~~----~~~~~i~l~~~~~l~~~~  196 (307)
T PRK13591        124 -LAFLPFIT-GYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSY-CGSL----IPVGLIFLFFGVKLFINS  196 (307)
T ss_pred             -HHHHHHHH-HHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhh-hhhH----HHHHHHHHHHHHHHHHHH
Confidence             55667766 789994          3455566 9999999986443211111 1111    111111111111112344


Q ss_pred             HHhhhhcchhHHHcCCccccccCCchhHH
Q psy13659        157 NALSWNLRPDYSRAGYRMMAVTNPDLCRL  185 (306)
Q Consensus       157 ~~~a~~D~edD~~~G~~tl~v~~G~~~~~  185 (306)
                      ..++++|+|+|+++|+||+|+++|++..+
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~~~A~  225 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTR  225 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECHHHHH
Confidence            67899999999999999999999986443

>KOG4581|consensus

Probab=99.49  E-value=1.1e-14  Score=129.25  Aligned_cols=233  Identities=18%  Similarity=0.185  Sum_probs=160.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhcccc--cCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHH--HhhHHHH
Q psy13659         11 FEWSSFLICSLGTGLVSSAANAVNQYHE--VPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLY--FGVNGLT   86 (306)
Q Consensus        11 ~~~~~~ll~~l~~~l~~~a~~~iND~~D--~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~--~~l~~~~   86 (306)
                      +++..+.++.++....++++|..|.|+|  .++|++..  .+|.++...+.+.+...++.++..+|+....  ..++|.-
T Consensus        96 ~~l~~~fl~a~avlavh~agnlvntyfdf~kgid~kka--ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~k  173 (359)
T KOG4581|consen   96 FRLATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKA--DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAK  173 (359)
T ss_pred             hhHHHHHHHHhhheeeecccchhhhhhhhhhccccccc--cchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhh
Confidence            6677788888999999999999999999  59998865  6999999999999999999998888775432  1244432


Q ss_pred             ----HHHHHHHHHHHHHhcCC---CccchhHHHHHHHHHhhhhhhhhHhhccCCCCCcchHHHHHHHHHHHhHhHHHHHh
Q psy13659         87 ----AALGLFNMVLYTSVYTP---MKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQFPHFNAL  159 (306)
Q Consensus        87 ----~~l~~~~~~ly~~~Ys~---lKr~t~~~~~vg~~~ga~~~l~G~~a~~g~~~~~~~~~~~l~~~~~~w~~~~~~~~  159 (306)
                          ..+.+-++.. +++|+.   +|.+..-++++-..+|.+.++..++..+|++.   +.++..++.+-+-+-...-++
T Consensus       174 lehlaliyfggls~-sflytggigfkyialgdliili~fgpiavlfaf~~q~g~l~---~~~l~yaiplalnteailhsn  249 (359)
T KOG4581|consen  174 LEHLALIYFGGLSG-SFLYTGGIGFKYIALGDLIILILFGPIAVLFAFAIQTGHLA---IFPLGYAIPLALNTEAILHSN  249 (359)
T ss_pred             hhhhhhhhccCccc-ceeEecccceEEEeccCEEEEEeechHHHHHHHHHhcCcee---EEeehheeeeccchHHHhccC
Confidence                2233444545 779997   68777778878788899999999999999987   544444444444443333355


Q ss_pred             hhhcchhHHHcCCccccccCCchhHHHHHHHHHHH-HHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhcc-----
Q psy13659        160 SWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVAL-LVVSAAGPLLD-VTNVWFALESIPLNAYFTYLAYKFYKE-----  232 (306)
Q Consensus       160 a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~a~~~~~~-----  232 (306)
                      +.+|.|.||++|+-|++++.|+....  ..|.+.+ .+.++. .+++ ..+.++++-  ++.+++.+..-|-+++     
T Consensus       250 ntrd~dndr~agivtlailig~t~s~--ily~~llf~py~lf-~i~~~~~si~~~lp--lltip~afqiek~frneqa~~  324 (359)
T KOG4581|consen  250 NTRDADNDREAGIVTLAILIGPTASH--ILYAMLLFAPYLLF-FIFALHCSISFALP--LLTIPMAFQIEKQFRNEQAFH  324 (359)
T ss_pred             CCcccccccccCeEEEEEeecccHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhH--HhhchhHHhHHHHhhhHhhhh
Confidence            78999999999999999999986432  3454433 333222 2222 233334322  2244555544333332     


Q ss_pred             -CChHHHHHHHHHHhHHHHHHHH
Q psy13659        233 -SDSSSSRKLFRFSLLHLPALMI  254 (306)
Q Consensus       233 -~~~~~~~~~F~~s~~~~~~l~~  254 (306)
                       -.+++++-.|..++.|...+.+
T Consensus       325 ~lp~qtakln~~~gi~yv~~~~~  347 (359)
T KOG4581|consen  325 KLPQQTAKLNFFFGIFYVFACCC  347 (359)
T ss_pred             hcchhhhhHHHHHHHHHHHHHHH
Confidence             2457888899999887765443

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=95.27  E-value=0.97  Score=41.85  Aligned_cols=43  Identities=7%  Similarity=-0.221  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHH
Q psy13659        142 FLLSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL  185 (306)
Q Consensus       142 ~~l~~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~  185 (306)
                      .+.++..++.+..-...|++.|+|.|++. .+.-|+..|+-+.+
T Consensus        40 ~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~   82 (279)
T PRK12884         40 LLGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRR   82 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHH
Confidence            33444455555555667899999999998 68889988974333

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=94.95  E-value=0.15  Score=47.85  Aligned_cols=94  Identities=17%  Similarity=0.131  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy13659         20 SLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAMLYFGVNGLTAALGLFNMVLYTS   99 (306)
Q Consensus        20 ~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~~~~l~~~~~~l~~~~~~ly~~   99 (306)
                      .++..+.+.+-..+||+.|+|.|++..+   |-+|. ++-.+.+..++..+..++..+....-+...+.+.+...+.+. 
T Consensus       171 ~~a~~l~~~~~~~in~i~Die~D~~aGi---~Tlav-~lG~~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~-  245 (282)
T PRK12875        171 VAGGWLWAMGMHTFSAIPDIEPDRAAGI---RTTAT-VLGERRTYAYCAACWLLAAAAFAAVDLRLGALLLVYPALVLA-  245 (282)
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHcCC---ccchh-hccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3445677777789999999999998652   33332 445666666666665555554432223333333333333322 


Q ss_pred             hcCC---CccchhH----HHHHHHHH
Q psy13659        100 VYTP---MKRISIA----NTWVGSVV  118 (306)
Q Consensus       100 ~Ys~---lKr~t~~----~~~vg~~~  118 (306)
                      +..-   ..|..+|    |+.+|.+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (282)
T PRK12875        246 ILRAGIAVDRAYWWFPAINTVVGMLL  271 (282)
T ss_pred             HhccccchhhhhHHHHHHHHHHHHHH
Confidence            2222   3343333    77777764

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=94.67  E-value=1.7  Score=40.43  Aligned_cols=50  Identities=4%  Similarity=-0.148  Sum_probs=33.0

Q ss_pred             HHHHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHHHHHHHHHHH
Q psy13659        144 LSAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVAL  194 (306)
Q Consensus       144 l~~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~  194 (306)
                      ..+..++.+..-...|++.|+|.|++.. +.-|+.-|+-+.+....+...+
T Consensus        42 ~~l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l   91 (279)
T PRK09573         42 AALVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITL   91 (279)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHH
Confidence            3344555555666678999999999866 8889888884444444343333

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=92.61  E-value=2.1  Score=39.68  Aligned_cols=49  Identities=10%  Similarity=-0.052  Sum_probs=31.3

Q ss_pred             HHHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHHHHHHHHHHH
Q psy13659        145 SAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVAL  194 (306)
Q Consensus       145 ~~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~  194 (306)
                      .+..++-+..-...|++.|+|-|+... |.-|+.-|+-+.+....+....
T Consensus        44 ~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l   92 (276)
T PRK12882         44 FAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILL   92 (276)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHH
Confidence            333444444555667899999999755 8889999985444443333333

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=92.22  E-value=6.8  Score=36.51  Aligned_cols=44  Identities=7%  Similarity=-0.093  Sum_probs=29.7

Q ss_pred             HHHHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHH
Q psy13659        147 ILFTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRY  190 (306)
Q Consensus       147 ~~~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~  190 (306)
                      ..++....-...|++.|+|-|+++-. |.-|+.-|+-+++....+
T Consensus        55 ~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~   99 (289)
T COG0382          55 AFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLL   99 (289)
T ss_pred             HHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHH
Confidence            33444444455678999999999876 788999998554443333

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=91.76  E-value=6.3  Score=36.48  Aligned_cols=39  Identities=8%  Similarity=-0.090  Sum_probs=26.6

Q ss_pred             hHHHHHhhhhcchhHHHcCCccccccCCchhHHHHHHHHH
Q psy13659        153 FPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTV  192 (306)
Q Consensus       153 ~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~  192 (306)
                      ..-...|++.|+|.|+..+ +.-|+.-|+-+.+....+..
T Consensus        51 ~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~   89 (277)
T PRK12883         51 SGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSL   89 (277)
T ss_pred             HHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHH
Confidence            3445567899999999765 88899999754443333333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=91.31  E-value=7.2  Score=36.94  Aligned_cols=49  Identities=8%  Similarity=-0.105  Sum_probs=31.0

Q ss_pred             HHHHHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHHHHHHHHHHH
Q psy13659        145 SAILFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRLTSLRYTVAL  194 (306)
Q Consensus       145 ~~~~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~~~~~~~~~~  194 (306)
                      ++..++-+..-...++++|+|.| +...+.-|+--|+-+++.+..++..+
T Consensus        52 ~~~vf~~~~~gniiNDy~D~EID-rIN~P~RPLPsG~VS~~~A~~~si~L  100 (299)
T PRK13592         52 VFTVFGFWMILRIADDFKDYETD-RRLFPHRALPSGRVKKKDLAIALSFI  100 (299)
T ss_pred             HHHHHHHHHHhHHHHHHhhHHHh-hhcCCCCCCCcCCCCHHHHHHHHHHH
Confidence            33444444444566789999999 55678888888884444444444333

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=91.22  E-value=6.3  Score=36.70  Aligned_cols=46  Identities=9%  Similarity=-0.129  Sum_probs=29.4

Q ss_pred             HHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHHHH
Q psy13659        149 FTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTVAL  194 (306)
Q Consensus       149 ~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~~~  194 (306)
                      ++-+..-...|++.|+|-|++... |.-|+.-|+-+.+....+.+..
T Consensus        55 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l  101 (285)
T PRK12847         55 VLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFIL  101 (285)
T ss_pred             HHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHH
Confidence            444444456678999999987554 5788888985444444444433

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=90.76  E-value=15  Score=34.70  Aligned_cols=38  Identities=3%  Similarity=-0.194  Sum_probs=25.3

Q ss_pred             HHHHHhhhhcchhHHHc-CCccccccCCchhHHHHHHHH
Q psy13659        154 PHFNALSWNLRPDYSRA-GYRMMAVTNPDLCRLTSLRYT  191 (306)
Q Consensus       154 ~~~~~~a~~D~edD~~~-G~~tl~v~~G~~~~~~~~~~~  191 (306)
                      .-...|++.|+|.||++ ..|.-|+.-|+-+.+....++
T Consensus        61 a~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~   99 (295)
T PRK12324         61 AVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILA   99 (295)
T ss_pred             HHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHH
Confidence            33456789999999997 455678888874444333333

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=89.84  E-value=1.2  Score=41.51  Aligned_cols=50  Identities=12%  Similarity=0.096  Sum_probs=35.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCC
Q psy13659          8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLS   59 (306)
Q Consensus         8 ~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is   59 (306)
                      .+.+++...+ +.++.++.+.+-..+|++.|+|.|++..+ |.=|+.-|+-+
T Consensus       155 ~g~~~~~~~l-l~~~~~lw~~~~~~~~a~~D~e~D~~~G~-~tlpv~~G~~~  204 (281)
T TIGR01474       155 TGDLSTAAWV-LYLANILWTLGYDTIYAMQDKEDDIKIGV-KSTALRFGDNT  204 (281)
T ss_pred             cCCCcHHHHH-HHHHHHHHHHHHHHHHHHhhHHhHHHcCC-CcccHHhhhhh
Confidence            3556654433 45567777888889999999999998764 45677677533

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=89.74  E-value=11  Score=35.52  Aligned_cols=36  Identities=3%  Similarity=-0.229  Sum_probs=25.1

Q ss_pred             HHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHH
Q psy13659        149 FTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL  185 (306)
Q Consensus       149 ~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~  185 (306)
                      .+-+..-...+++.|+|.|++.+ |.-|+.-|+-+.+
T Consensus        64 ~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G~is~~   99 (306)
T TIGR02056        64 PCLTGYTQTINDFYDRDIDAINE-PYRPIPSGAISEP   99 (306)
T ss_pred             HHHHHHHHHHHhHhhhhhhccCC-CCCCCCCCccCHH
Confidence            44455556667889999998776 5678888874333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=89.16  E-value=3.3  Score=38.36  Aligned_cols=37  Identities=19%  Similarity=0.046  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCC
Q psy13659         20 SLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGV   57 (306)
Q Consensus        20 ~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~   57 (306)
                      .+..++....-+++||.-|+|-|+++.+ +.=|..-|+
T Consensus       167 ~~~~fl~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~lG~  203 (285)
T PRK12872        167 AVFIFLKSFIREIVFDIKDIEGDRKSGL-KTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHHHHhcccchhHHHcCC-cccchhcch
Confidence            3444555666778999999999999765 345655565

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=88.32  E-value=1.9  Score=40.54  Aligned_cols=48  Identities=13%  Similarity=0.131  Sum_probs=33.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCC
Q psy13659          8 PAPFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGV   57 (306)
Q Consensus         8 ~g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~   57 (306)
                      .|.+++..+++ .+..++.+.+=..+|++.|+|.|++... |.=|+.-|+
T Consensus       162 ~g~~~~~~~~l-~~~~~~w~~~~~~~~a~~D~~~D~~~Gi-~slpv~~G~  209 (291)
T PRK12874        162 LGEIPLWSVFL-ALGVMFWVAGFDLLYSLQDMEFDKKRGL-HSIPSKFGE  209 (291)
T ss_pred             cCCCcHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHcCC-CcccHHhhh
Confidence            45566544433 4566677778889999999999988754 345655555

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=88.26  E-value=4.7  Score=36.07  Aligned_cols=35  Identities=6%  Similarity=-0.043  Sum_probs=23.4

Q ss_pred             HHhHhHHHHHhhhhcchhHHHc-CCccccccCCchh
Q psy13659        149 FTWQFPHFNALSWNLRPDYSRA-GYRMMAVTNPDLC  183 (306)
Q Consensus       149 ~~w~~~~~~~~a~~D~edD~~~-G~~tl~v~~G~~~  183 (306)
                      ++.+..-...++..|.|.|+.. +.+..|+..|+-+
T Consensus        33 ~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   33 FLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             HHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence            3444444455788999999996 4566677777644

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=87.31  E-value=20  Score=33.24  Aligned_cols=48  Identities=6%  Similarity=-0.391  Sum_probs=31.0

Q ss_pred             HHHHHHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHH
Q psy13659        145 SAILFTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTV  192 (306)
Q Consensus       145 ~~~~~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~  192 (306)
                      ++..++-+..-...|++.|+|-|++... +.-|+.-|+-+.+....+++
T Consensus        42 ~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~   90 (279)
T PRK12869         42 LIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGS   90 (279)
T ss_pred             HHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHH
Confidence            3334444555566678999999998665 67888888854444433333

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=87.22  E-value=8  Score=35.86  Aligned_cols=42  Identities=5%  Similarity=-0.242  Sum_probs=27.6

Q ss_pred             HHHHHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHH
Q psy13659        146 AILFTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTS  187 (306)
Q Consensus       146 ~~~~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~  187 (306)
                      +..++-+..-...|++.|+|-|++... |.-|+.-|+-+.+..
T Consensus        42 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a   84 (280)
T TIGR01473        42 LGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREA   84 (280)
T ss_pred             HHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHH
Confidence            334444545556678999999997543 677888887443433

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=86.79  E-value=26  Score=33.13  Aligned_cols=43  Identities=12%  Similarity=-0.031  Sum_probs=28.4

Q ss_pred             HhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHHHH
Q psy13659        152 QFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTVAL  194 (306)
Q Consensus       152 ~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~~~  194 (306)
                      ...-...|++.|+|-|++... |.-|+.-|+-+.+....++..+
T Consensus        60 ~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l  103 (306)
T PRK13362         60 VASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLAL  103 (306)
T ss_pred             HHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence            334445678999999998765 5788889985444444444433

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=86.01  E-value=11  Score=35.47  Aligned_cols=42  Identities=5%  Similarity=-0.145  Sum_probs=27.4

Q ss_pred             HHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHH
Q psy13659        149 FTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRY  190 (306)
Q Consensus       149 ~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~  190 (306)
                      ++-...-...|++.|+|-|++... +.-|+.-|+-+.+....+
T Consensus        54 ~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~   96 (296)
T PRK04375         54 ALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIF   96 (296)
T ss_pred             HHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHH
Confidence            333444456678999999998654 677888898544433333

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=85.85  E-value=15  Score=34.53  Aligned_cols=44  Identities=5%  Similarity=-0.037  Sum_probs=28.7

Q ss_pred             HHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHH
Q psy13659        149 FTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTV  192 (306)
Q Consensus       149 ~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~  192 (306)
                      ++-...--..|++.|+|-|++... |..|+.-|+-+.+....+..
T Consensus        55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~   99 (289)
T PLN02809         55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLG   99 (289)
T ss_pred             HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence            333334445678999999998665 68899999854443333333

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=85.67  E-value=4.9  Score=37.88  Aligned_cols=48  Identities=10%  Similarity=0.070  Sum_probs=33.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCC
Q psy13659          9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVL   58 (306)
Q Consensus         9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~I   58 (306)
                      +.+++..+ +..+..++...+=...||+.|+|-|+++.+ |.=|+.-|+-
T Consensus       171 g~~~~~~~-ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~-~Tlpv~~G~~  218 (297)
T PRK12871        171 GQPDMTAL-LYMVFFYPWTMAHLGLNDFIDLENDRARGM-KSIAVLYGMK  218 (297)
T ss_pred             CCCcHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHcCC-eeeeeeechH
Confidence            44555433 334556667778889999999999999875 4566666653

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=85.43  E-value=18  Score=33.75  Aligned_cols=59  Identities=14%  Similarity=-0.035  Sum_probs=34.5

Q ss_pred             hhhHhhccCCCCCcchHHHH-HHHHHHHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHH
Q psy13659        124 LMGWAACTGSLLDGSGGAFL-LSAILFTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRL  185 (306)
Q Consensus       124 l~G~~a~~g~~~~~~~~~~~-l~~~~~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~  185 (306)
                      +.|.....+.++   +..+. ..+..++-...-...|++.|+|-|++... +.-|+.-|+-+.+
T Consensus        26 ~~~~~~~~~~~~---~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~   86 (284)
T PRK12888         26 LTAMFASDGSVH---WADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVR   86 (284)
T ss_pred             HHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHH
Confidence            333333355555   43332 23334444445556678999999998764 4668888874443

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=85.32  E-value=5.7  Score=36.90  Aligned_cols=37  Identities=3%  Similarity=-0.365  Sum_probs=26.0

Q ss_pred             HHHhHhHHHHHhhhhcchhHHHcCCccccccCCchhHH
Q psy13659        148 LFTWQFPHFNALSWNLRPDYSRAGYRMMAVTNPDLCRL  185 (306)
Q Consensus       148 ~~~w~~~~~~~~a~~D~edD~~~G~~tl~v~~G~~~~~  185 (306)
                      ..+-+..-...|+..|+|.|++.+ +.-|+.-|+-+.+
T Consensus        47 ~~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~   83 (283)
T TIGR01476        47 GPLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLR   83 (283)
T ss_pred             HHHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHH
Confidence            334455555678899999999877 7788888874333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PLN00012 chlorophyll synthetase; Provisional

Probab=84.85  E-value=5.9  Score=38.72  Aligned_cols=47  Identities=13%  Similarity=0.164  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCC
Q psy13659          9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGV   57 (306)
Q Consensus         9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~   57 (306)
                      +..++..+++. +...+...+-...||+-|+|-|++... +.=|+.-|+
T Consensus       248 g~~s~~~illa-l~~~l~~lai~ivnd~~Die~Dr~aG~-~TLpV~~G~  294 (375)
T PLN00012        248 GTLTPDVVVLT-LLYSIAGLGIAIVNDFKSIEGDRALGL-QSLPVAFGV  294 (375)
T ss_pred             CCCCHHHHHHH-HHHHHHHHHHHHHhhhcchhhHHHcCC-cccceeech
Confidence            44565544443 344466777889999999999998753 345665564

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=84.75  E-value=4.9  Score=37.72  Aligned_cols=57  Identities=18%  Similarity=0.147  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13659         18 ICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGTAML   78 (306)
Q Consensus        18 l~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl~l~   78 (306)
                      +..++..+..++-..+||+.|.|.||++-+   |-+| =++-.+.|..++..+..++.++.
T Consensus       164 l~~~~~~~~~~a~~ii~~irDie~Dr~~G~---~Tlp-v~lG~~~a~~~~~~l~~~a~~~~  220 (282)
T PRK13105        164 AVLAAFFLWGMASHAFGAVQDVVADREAGI---ASIA-TVLGARRTVRLAVGLYAAAAVLM  220 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhCcchHhHHHcCC---ccch-HHhcHHHHHHHHHHHHHHHHHHH
Confidence            344455566888899999999999998753   3333 24556777777777777666554

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=84.33  E-value=1.3  Score=41.25  Aligned_cols=39  Identities=13%  Similarity=0.244  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCC
Q psy13659         18 ICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGV   57 (306)
Q Consensus        18 l~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~   57 (306)
                      +..+..++.+.+-..+||..|+|-|++..+ |.=|+.-|+
T Consensus       162 ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~-~tlpv~~G~  200 (282)
T TIGR01475       162 LLGIGVGFWIAGFDLIYAIQDYEFDRKNGL-HSIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhHHHcCC-CchHHHhch
Confidence            344566677777789999999999998876 466776773

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=84.06  E-value=7.1  Score=37.00  Aligned_cols=58  Identities=12%  Similarity=0.138  Sum_probs=35.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHH
Q psy13659          9 APFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASS   71 (306)
Q Consensus         9 g~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~   71 (306)
                      +..++..++.. +...+..++-...||+-|+|.|+++.| +.=|.-=|   ++.+..+...+.
T Consensus       170 ~~~~~~~~~~s-l~~gll~~~IL~~Nn~rD~e~D~~~Gk-~TL~v~lG---~~~a~~ly~~l~  227 (304)
T PRK07419        170 PSWSLIPLAAS-IILGLATSLILFCSHFHQVEDDLAAGK-RSPIVRLG---TKRGAQLLPWIV  227 (304)
T ss_pred             CCCCHHHHHHH-HHHHHHHHHHHHHcCCcchhhHHHcCC-cceeeeec---hHhHHHHHHHHH
Confidence            44565444333 334467778888999999999999875 23343333   444444433333

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=83.51  E-value=37  Score=32.11  Aligned_cols=27  Identities=4%  Similarity=-0.170  Sum_probs=20.6

Q ss_pred             HhhhhcchhHHHcCCccccccCCchhHH
Q psy13659        158 ALSWNLRPDYSRAGYRMMAVTNPDLCRL  185 (306)
Q Consensus       158 ~~a~~D~edD~~~G~~tl~v~~G~~~~~  185 (306)
                      .|++.|+|-|+.. .+..|+.-|+-+.+
T Consensus        72 iNd~~D~~iD~in-kp~rPiasG~ls~~   98 (308)
T PRK12887         72 LNQLTDIEIDRIN-KPHLPLAAGEFSRR   98 (308)
T ss_pred             HhhhhhHHHHhcC-CCCCCcCCcccCHH
Confidence            5678999999864 48899988884433

>PRK13591 ubiA prenyltransferase; Provisional

Probab=83.13  E-value=3.8  Score=38.97  Aligned_cols=25  Identities=20%  Similarity=0.193  Sum_probs=19.1

Q ss_pred             HhhcccccCcCCCCCCCCCCcccCCC
Q psy13659         32 AVNQYHEVPFDSQMSRTKNRVLVRGV   57 (306)
Q Consensus        32 ~iND~~D~~iD~~~~Rt~~RPL~sG~   57 (306)
                      ++||+.|.|-|+++-| +.=|+.=|+
T Consensus       197 iindirDiEGDr~~G~-kTLPV~lG~  221 (307)
T PRK13591        197 CVYDFKDVKGDTLAGI-KTLPVSLGE  221 (307)
T ss_pred             HHHHhhhhHhHHHcCC-eeEEEEECH
Confidence            6899999999999865 345655554

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=83.05  E-value=20  Score=33.36  Aligned_cols=46  Identities=11%  Similarity=0.014  Sum_probs=28.5

Q ss_pred             HHhHhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHHHHHH
Q psy13659        149 FTWQFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRYTVAL  194 (306)
Q Consensus       149 ~~w~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~~~~~  194 (306)
                      ++-+..-...|++.|+|-|++... |.-|+.-|+-+.+....++...
T Consensus        52 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l   98 (282)
T PRK12848         52 FLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVL   98 (282)
T ss_pred             HHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence            333444455678999999986554 4788888985444343343333

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=81.38  E-value=7.5  Score=36.87  Aligned_cols=46  Identities=17%  Similarity=0.215  Sum_probs=29.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCC
Q psy13659         10 PFEWSSFLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGV   57 (306)
Q Consensus        10 ~~~~~~~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~   57 (306)
                      ..++..++... ...+...+-...||+.|+|-|++..+ +.=|+.-|+
T Consensus       186 ~~~~~~~l~~~-~~~l~~~~~~~~~d~~D~e~D~~aG~-~Tlpv~~G~  231 (314)
T PRK07566        186 LPSWPIVILAL-LYSLGAHGIMTLNDFKSVEGDRQLGL-RSLPVVFGE  231 (314)
T ss_pred             CCCHHHHHHHH-HHHHHHHHHHHHHHHHHhHhHHHcCC-cccceeEcH
Confidence            45555444433 33345666689999999999999864 345555554

>PLN02922 prenyltransferase

Probab=80.82  E-value=7.5  Score=37.01  Aligned_cols=51  Identities=14%  Similarity=0.167  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHH
Q psy13659         16 FLICSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALAS   70 (306)
Q Consensus        16 ~ll~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l   70 (306)
                      .++..+...+..++-...||+.|+|.|+++.| +.=|..=|   ++.+..+...+
T Consensus       190 ~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk-~TL~v~lG---~~~a~~l~~~l  240 (315)
T PLN02922        190 VLSASVLVGLTTTLILFCSHFHQIDGDRAVGK-MSPLVRLG---TEKGSRVVRWA  240 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcchhhHHHcCc-cceeeEEC---hHHHHHHHHHH
Confidence            34455566678888999999999999999975 23343334   45554444333

>PRK13595 ubiA prenyltransferase; Provisional

Probab=80.68  E-value=25  Score=33.19  Aligned_cols=23  Identities=4%  Similarity=-0.165  Sum_probs=14.5

Q ss_pred             HhhhhcchhHHHcCCccccccCCc
Q psy13659        158 ALSWNLRPDYSRAGYRMMAVTNPD  181 (306)
Q Consensus       158 ~~a~~D~edD~~~G~~tl~v~~G~  181 (306)
                      .|++-|+|.|+++..+ -++--|+
T Consensus        66 iND~fD~eiDa~Npr~-~~i~~G~   88 (292)
T PRK13595         66 LNDLADRETDAASPRK-GGWQGAR   88 (292)
T ss_pred             HHhhhhhhhhccCCCC-CCCCcCc
Confidence            3577888888765544 4544455

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=80.60  E-value=27  Score=32.67  Aligned_cols=39  Identities=8%  Similarity=-0.105  Sum_probs=25.4

Q ss_pred             HhHHHHHhhhhcchhHHHcCC-ccccccCCchhHHHHHHH
Q psy13659        152 QFPHFNALSWNLRPDYSRAGY-RMMAVTNPDLCRLTSLRY  190 (306)
Q Consensus       152 ~~~~~~~~a~~D~edD~~~G~-~tl~v~~G~~~~~~~~~~  190 (306)
                      ...-...|++.|+|-|++... +.-|+.-|+-+.+....+
T Consensus        59 ~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~   98 (290)
T PRK12870         59 SAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVI   98 (290)
T ss_pred             HHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHH
Confidence            334445678899999987554 367888898544433333

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=80.09  E-value=8.6  Score=36.58  Aligned_cols=53  Identities=13%  Similarity=-0.022  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHhhcccccCcCCCCCCCCCCcccCCCCCHHHHHHHHHHHHHHHH
Q psy13659         19 CSLGTGLVSSAANAVNQYHEVPFDSQMSRTKNRVLVRGVLSPLHALGFALASSAAGT   75 (306)
Q Consensus        19 ~~l~~~l~~~a~~~iND~~D~~iD~~~~Rt~~RPL~sG~Is~~~A~~~~~~l~~~gl   75 (306)
                      ..+...+..+.-...||+.|+|-|+++.| +.=|.   ++-++.+..+...+..++.
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk-~TL~v---~lG~~~a~~l~~~l~~~a~  246 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHR-YTLVY---YIGREKGVVLFAILFYASY  246 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCC-eeeee---eEcHHhHHHHHHHHHHHHH
Confidence            45566677777789999999999999875 23333   3445555555444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	306
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 5e-06
 Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 64/215 (29%)

Query: 94  MVLYTSVYTPMKRISIANTWVGSVVGAIPPLMGWAACTGSLLDGSGGAFLLSAILFTWQ- 152
           +  ++   TP +  S+   ++      +P        T +    S  A  +   L TW  
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE----VLTTNPRRLSIIAESIRDGLATWDN 346

Query: 153 FPHFN--------ALSWN-LRPDYSRAGYRMMAVTNPD-------LCRL----------- 185
           + H N          S N L P   R  +  ++V  P        L  +           
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 186 -------TSL--------RYTVALLVVSAAGPLLDVTNV---------------WFALES 215
                   SL          ++  + +     L +   +                  L  
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 216 IPLNAYF-TYLAYKFYKESDSSSSRKLFRFSLLHL 249
             L+ YF +++ +   K  +      LFR   L  
Sbjct: 467 PYLDQYFYSHIGHHL-KNIEHPERMTLFRMVFLDF 500

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00