Psyllid ID: psy13665

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
TSSKNSVKADPRPELKVTATTVHTYDKPLQRKHVKSGALDPVLVPGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMAPAPFEWSSFLICFSQLQLLHSVLF
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEEEcccHHHHHHccccccccEEEcccEEEEEccccccccccccccccEEEEEEccccccccccccHHHHHHHHHccccEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEEEEcccccHHHHHccccccccEEccccEEEEcccccccccEcccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
tssknsvkadprpelkvtattvhtydkplqrkhvksgaldpvlvpggvaietnkrrkdakvipepdwplVVLTSMagyamapapfewssfLICFSQLQLLHSVLF
Flexible Loop (DISEMBL)
tssknsvkadprpelkvtattvhtydkplqrkhvksgaldpvlvpggvaietnkrrkdakvipepdwPLVVLTSMAGYAMAPAPFEWSSFLICFSQLQLLHSVLF
Low Complexity Region (SEG)
TSSKNSVKADPRPELKVTATTVHTYDKPLQRKHVKSGALDPVLVPGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMAPAPFEWSSFLICFSQLQLLHSVLF
Disordered region (IsUnstruct)
*********************VHTY********VKSGALDPVLVPGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMAPAPFEWSSFLICFSQLQLLHSV**
Disordered Region (DISOPRED)
************P*LKVTATTVHTYDKPLQRKHVKSGALDPVLVPGGVAIE*********VIPEPDWPLVVLTSMAGYAMAPAPFEWSSFLICFSQLQLLHSVLF
Disordered Region (DISEMBL)
************PELKVTATTVHTYDKPLQRKHVKSGALDPVLVPGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMAPAPFEWSSFLICFSQLQLLHSVLF
Disordered Region (DISPRO)
*********DPRPELKVTATTVHTYDKPLQRKHVKSGALDPVLVPGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMAPAPFEWSSFLICFSQLQLLHSVLF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
TSSKNSVKADPRPELKVTATTVHTYDKPLQRKHVKSGALDPVLVPGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMAPAPFEWSSFLICFSQLQLLHSVLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
157119461	487	protoheme ix farnesyltransferase [Aedes	0.238	0.051	0.8	0.0007
170046632	458	protoheme IX farnesyltransferase, mitoch	0.238	0.054	0.8	0.0009

>gi|157119461|ref|XP_001653393.1| protoheme ix farnesyltransferase [Aedes aegypti] gi|108883176|gb|EAT47401.1| AAEL001479-PA [Aedes aegypti]

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 24/25 (96%)

Query: 69  LVVLTSMAGYAMAPAPFEWSSFLIC 93
           LVV+T+MAGYAMAPAPFE S+FL+C
Sbjct: 142 LVVMTTMAGYAMAPAPFELSTFLLC 166

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170046632|ref|XP_001850860.1| protoheme IX farnesyltransferase, mitochondrial [Culex quinquefasciatus] gi|167869353|gb|EDS32736.1| protoheme IX farnesyltransferase, mitochondrial [Culex quinquefasciatus]

 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 24/25 (96%)

Query: 69  LVVLTSMAGYAMAPAPFEWSSFLIC 93
           LVV+T+MAGYAMAPAPFE S+FL+C
Sbjct: 137 LVVMTAMAGYAMAPAPFELSTFLLC 161

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
UNIPROTKB|A5D7D6	443	COX10 "Uncharacterized protein	0.247	0.058	0.653	0.0006

UNIPROTKB|A5D7D6 COX10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 95 (38.5 bits), Expect = 0.00060, P = 0.00060
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query:    69 LVVLTSMAGYAMAPAPFEWSSFLICF 94
             LVV T+ AG+A+APAPF+WS FL+ F
Sbjct:   168 LVVSTTSAGFALAPAPFDWSCFLLTF 193


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      105       105   0.00091  102 3  11 22  0.43    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  558 (59 KB)
  Total size of DFA:  120 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.60u 0.10s 11.70t   Elapsed:  00:00:04
  Total cpu time:  11.60u 0.10s 11.70t   Elapsed:  00:00:04
  Start:  Thu Aug 15 12:50:49 2013   End:  Thu Aug 15 12:50:53 2013

GO:0017004 "cytochrome complex assembly" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

GO:0008535 "respiratory chain complex IV assembly" evidence=IEA

GO:0006784 "heme a biosynthetic process" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0048034 "heme O biosynthetic process" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008495 "protoheme IX farnesyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
KOG1380|consensus	409		99.6
PLN02776	341	prenyltransferase	97.25
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	97.13
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	90.93
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	90.91
PRK12873	294	ubiA prenyltransferase; Reviewed	90.43
PRK13362	306	protoheme IX farnesyltransferase; Provisional	90.42
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	88.23
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	86.67
PRK12886	291	ubiA prenyltransferase; Reviewed	85.99
PRK04375	296	protoheme IX farnesyltransferase; Provisional	85.87
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	85.55
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	85.49
PRK13106	300	ubiA prenyltransferase; Reviewed	83.34
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	81.48

>KOG1380|consensus

Probab=99.60  E-value=2.7e-16  Score=132.17  Aligned_cols=84  Identities=32%  Similarity=0.361  Sum_probs=63.4

Q ss_pred             CCcccCCCCceeEeeeeeeecCchhhhhccccCCCcceecCCceeeeeccccccccccccCCcceeeeecccceeecCcC
Q psy13665          5 NSVKADPRPELKVTATTVHTYDKPLQRKHVKSGALDPVLVPGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMAPAP   84 (105)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~g~ai~tn~~rkd~kLSK~RLTaLVVlTamAGYAMAP~P   84 (105)
                      |.+-+.-.|.-.|++++-|--..|+|-+-.+...+                |--.||||.|||.|||+|+|+||||||+|
T Consensus        60 ~~~~a~~~pd~~v~~~~~~~~s~~l~ly~lp~k~~----------------~~y~eLsK~rLT~LVV~tt~~gYalap~p  123 (409)
T KOG1380|consen   60 NTVFATATPDSQVTATTGRWSSRPLALYTLPGKYA----------------RCYLELSKPRLTMLVVLTTMTGYALAPGP  123 (409)
T ss_pred             ccchhhcCCCcceeecchhhcccchhhcCCCcchH----------------HHHHHhcccceEEEEeeeccccccccccC
Confidence            44445555666666666655555554443332221                33468999999999999999999999999


Q ss_pred             ccHHHHHHHHhhhhhhhccc
Q psy13665         85 FEWSSFLICFSQLQLLHSVL  104 (105)
Q Consensus        85 fd~stFl~~slGTgL~Saa~  104 (105)
                      ||+.+|+++++||+||||+.
T Consensus       124 ~s~~~l~~~tvGT~L~S~sA  143 (409)
T KOG1380|consen  124 FSFPTLLYTTVGTGLCSASA  143 (409)
T ss_pred             CCcchhHHHhhhhHHHHhhh
Confidence            99999999999999999973

>PLN02776 prenyltransferase

Probab=97.25  E-value=4.3e-05  Score=62.65  Aligned_cols=43  Identities=19%  Similarity=0.145  Sum_probs=39.1

Q ss_pred             ccccCCcceeeeecccceeecC-cCccHHHHHHHHhhhhhhhcc
Q psy13665         61 VIPEPDWPLVVLTSMAGYAMAP-APFEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        61 LSK~RLTaLVVlTamAGYAMAP-~Pfd~stFl~~slGTgL~Saa  103 (105)
                      |+|-|++.+|++|+.+||.+|. +..+|..++++.+|+.|++++
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~~~l~~~~lg~~l~~aa   44 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAIDLPGLGWTCAGTMLCAAS   44 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999995 467999999999999999876

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=7.9e-05  Score=61.19  Aligned_cols=45  Identities=18%  Similarity=0.175  Sum_probs=42.8

Q ss_pred             ccccccCCcceeeeecccceeecC-cCccHHHHHHHHhhhhhhhcc
Q psy13665         59 AKVIPEPDWPLVVLTSMAGYAMAP-APFEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        59 ~kLSK~RLTaLVVlTamAGYAMAP-~Pfd~stFl~~slGTgL~Saa  103 (105)
                      .+|.|-|++.|+++|+.+||.+|| +..++..++++.+|+.|++++
T Consensus        22 l~LtKPrvi~L~~it~~~g~~lA~~~~~~~~l~~~~~~g~~L~a~~   67 (304)
T COG0109          22 LQLTKPRVISLLLITAFAGMLLAPRGSINPLLLLLTLLGGALGAGG   67 (304)
T ss_pred             HHHhCCeeeehHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999 899999999999999999875

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=90.93  E-value=0.038  Score=42.28  Aligned_cols=45  Identities=9%  Similarity=0.029  Sum_probs=39.8

Q ss_pred             ccccccCCcceeeeecccceeec-CcCccHHHHHHHHhhhhhhhcc
Q psy13665         59 AKVIPEPDWPLVVLTSMAGYAMA-PAPFEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        59 ~kLSK~RLTaLVVlTamAGYAMA-P~Pfd~stFl~~slGTgL~Saa  103 (105)
                      .+|.|.+.+.++..++.+|+.+| ++.+|+..++++.+|+.+..++
T Consensus         6 ~~L~r~~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~l~~~l~~~a   51 (282)
T TIGR01475         6 LELIKFEHTVFALPFAYAGALLAAKGLPGLKTLILILIAAVSARTA   51 (282)
T ss_pred             HHHHccccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999998 6778999999999999988765

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=90.91  E-value=0.046  Score=43.50  Aligned_cols=47  Identities=13%  Similarity=0.138  Sum_probs=40.2

Q ss_pred             cccccc---ccCCcceeeeecccceeecCc------CccHHHHHHHHhhhhhhhcc
Q psy13665         57 KDAKVI---PEPDWPLVVLTSMAGYAMAPA------PFEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        57 kd~kLS---K~RLTaLVVlTamAGYAMAP~------Pfd~stFl~~slGTgL~Saa  103 (105)
                      .=.||+   |-|.+.++++++..|+++|..      .+++..++++.+|+.|++++
T Consensus        32 ~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a   87 (314)
T PRK12878         32 PYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGA   87 (314)
T ss_pred             HHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            345666   999999999999999999987      78988899999999887664

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=90.43  E-value=0.055  Score=43.41  Aligned_cols=45  Identities=7%  Similarity=0.025  Sum_probs=39.7

Q ss_pred             ccccccCCcceeeeecccceeecCc-CccHHHHHHHHhhhhhhhcc
Q psy13665         59 AKVIPEPDWPLVVLTSMAGYAMAPA-PFEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        59 ~kLSK~RLTaLVVlTamAGYAMAP~-Pfd~stFl~~slGTgL~Saa  103 (105)
                      +++.|.+.+.|++.++..|+.+||. +.++..++++.+|+.|++++
T Consensus        14 ~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~~~~~~~~~g~~l~~~a   59 (294)
T PRK12873         14 LRWNKPTGRLILLIPAGWSLWLTPSAPPSLLLLLLIILGGLAVSGA   59 (294)
T ss_pred             hCccccchHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence            4669999999999999999999985 47888899999999998876

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=90.42  E-value=0.03  Score=44.48  Aligned_cols=45  Identities=16%  Similarity=0.084  Sum_probs=39.4

Q ss_pred             ccccccCCcceeeeecccceeecC-cCccHHHHHHHHhhhhhhhcc
Q psy13665         59 AKVIPEPDWPLVVLTSMAGYAMAP-APFEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        59 ~kLSK~RLTaLVVlTamAGYAMAP-~Pfd~stFl~~slGTgL~Saa  103 (105)
                      .+|.|-+.+.++++++.+|+++|. +.+++..++++.+|+.|++++
T Consensus        17 ~~L~RP~~~~~~~~~~~~G~~la~~~~~~~~~~~~~~lg~~l~~aa   62 (306)
T PRK13362         17 IQVTKPGIIFGNVISVAGGFFLASKGHVDPVLMLAAVIGLSLVVAS   62 (306)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999984 678888888888999998875

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=88.23  E-value=0.055  Score=41.34  Aligned_cols=45  Identities=11%  Similarity=0.182  Sum_probs=38.8

Q ss_pred             ccccccCCcceeeeecccceeecCc-CccHHHHHHHHhhhhhhhcc
Q psy13665         59 AKVIPEPDWPLVVLTSMAGYAMAPA-PFEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        59 ~kLSK~RLTaLVVlTamAGYAMAP~-Pfd~stFl~~slGTgL~Saa  103 (105)
                      .+|.|.+.+.++++++..|+++|.+ .+++..++++.+|+.+++++
T Consensus         7 ~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~l~~~l~~~~   52 (279)
T PRK09573          7 FELIRPKNCIGASIGAIIGYLIASNFKIDLKGIILAALVVFLVCAG   52 (279)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHH
Confidence            4688899999999999999999954 56888899999999998765

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=86.67  E-value=0.07  Score=41.19  Aligned_cols=45  Identities=20%  Similarity=0.229  Sum_probs=37.8

Q ss_pred             ccccccCCcceeeeecccceeecC-cCccHHHHHHHHhhhhhhhcc
Q psy13665         59 AKVIPEPDWPLVVLTSMAGYAMAP-APFEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        59 ~kLSK~RLTaLVVlTamAGYAMAP-~Pfd~stFl~~slGTgL~Saa  103 (105)
                      .+|.|-+.+.++.+++.+|+++|. +.+++..++++.+|+.|++++
T Consensus         6 ~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~~~~~l~~~a   51 (279)
T PRK12869          6 LKLLKPRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGG   51 (279)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            467888899999999999999994 567888888888888887664

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=85.99  E-value=0.14  Score=40.18  Aligned_cols=45  Identities=9%  Similarity=-0.105  Sum_probs=37.8

Q ss_pred             ccccccCCcceeeeecccceeec-CcCccHHHHHHHHhhhhhhhcc
Q psy13665         59 AKVIPEPDWPLVVLTSMAGYAMA-PAPFEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        59 ~kLSK~RLTaLVVlTamAGYAMA-P~Pfd~stFl~~slGTgL~Saa  103 (105)
                      .+|.|.+.+.++..++..|+.+| ++..++..++++.+|..++.++
T Consensus        12 ~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~~~l~~~~l~~~l~~~a   57 (291)
T PRK12886         12 LEMIKFSHTLFALPFAGIGAVLAALGLPGASQLDWILMAMVGARTA   57 (291)
T ss_pred             HHHhCccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999998 4455777788888998887654

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=85.87  E-value=0.085  Score=41.06  Aligned_cols=45  Identities=16%  Similarity=0.214  Sum_probs=39.3

Q ss_pred             ccccccCCcceeeeecccceeecC-cCccHHHHHHHHhhhhhhhcc
Q psy13665         59 AKVIPEPDWPLVVLTSMAGYAMAP-APFEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        59 ~kLSK~RLTaLVVlTamAGYAMAP-~Pfd~stFl~~slGTgL~Saa  103 (105)
                      .+|.|-+.+.+++.++..|+++|. +.+|+..++++.+|+.|++++
T Consensus        14 ~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~~~~l~~l~~~l~~aa   59 (296)
T PRK04375         14 LALTKPRVISLNLFTALGGMLLAPPGVPPLLLLLLTLLGIALVAGA   59 (296)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999995 568888899999999988765

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=85.55  E-value=0.1  Score=39.87  Aligned_cols=45  Identities=18%  Similarity=0.217  Sum_probs=38.8

Q ss_pred             ccccccCCcceeeeecccceeecCcC--ccHHHHHHHHhhhhhhhcc
Q psy13665         59 AKVIPEPDWPLVVLTSMAGYAMAPAP--FEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        59 ~kLSK~RLTaLVVlTamAGYAMAP~P--fd~stFl~~slGTgL~Saa  103 (105)
                      .++.|.+.+.+.++++.+|+++|...  +++..++++.+|+.+++++
T Consensus         4 ~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~l~~~~~~l~~~a   50 (280)
T TIGR01473         4 LQLTKPRIISLLLITAFAGMWLAPGGALVNPPLLLLTLLGTTLAAAS   50 (280)
T ss_pred             HHHccHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            36788888999999999999999765  6888899999999888765

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=85.49  E-value=0.11  Score=40.16  Aligned_cols=45  Identities=7%  Similarity=-0.076  Sum_probs=37.1

Q ss_pred             ccccccCCcceeeeecccceeecCc--C-ccHHHHHHHHhhhhhhhcc
Q psy13665         59 AKVIPEPDWPLVVLTSMAGYAMAPA--P-FEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        59 ~kLSK~RLTaLVVlTamAGYAMAP~--P-fd~stFl~~slGTgL~Saa  103 (105)
                      +++.|-+.+.+++++++.|+.+|..  . .+|..++++.+|+.+++++
T Consensus         8 ~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~~~l~~~a   55 (281)
T TIGR01474         8 MRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGA   55 (281)
T ss_pred             HccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999964  2 4777788888998887554

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=83.34  E-value=0.12  Score=41.23  Aligned_cols=59  Identities=17%  Similarity=0.158  Sum_probs=45.7

Q ss_pred             CCceeeeeccccccccccccCCcceeeeecccceeec-CcCccHHHHHHHHhhhhhhhcc
Q psy13665         45 PGGVAIETNKRRKDAKVIPEPDWPLVVLTSMAGYAMA-PAPFEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        45 ~~g~ai~tn~~rkd~kLSK~RLTaLVVlTamAGYAMA-P~Pfd~stFl~~slGTgL~Saa  103 (105)
                      |+|.+-.-++=|.=.+|.|.+-+.+...++..|+.+| ++.+++..++++.+|+.+.+++
T Consensus         5 ~~~~~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~~~~l~l~~lg~~l~~~a   64 (300)
T PRK13106          5 PGGLNNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPPISTLILIFLALFFLRTA   64 (300)
T ss_pred             cccchhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            4555554444444568899998888889999999998 5677888899999999887664

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=81.48  E-value=0.22  Score=39.00  Aligned_cols=44  Identities=5%  Similarity=-0.103  Sum_probs=36.9

Q ss_pred             cccccCCcceeeeecccceeec-CcCccHHHHHHHHhhhhhhhcc
Q psy13665         60 KVIPEPDWPLVVLTSMAGYAMA-PAPFEWSSFLICFSQLQLLHSV  103 (105)
Q Consensus        60 kLSK~RLTaLVVlTamAGYAMA-P~Pfd~stFl~~slGTgL~Saa  103 (105)
                      ++.|.+.+.|+++++..|+.+| .+.+++..++++.+|+.+++++
T Consensus        17 R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~~~~l~~lg~~~~~~a   61 (290)
T PRK12870         17 RWDKPAGRLILMIPALWAVFLAAHGLPPLPLVGIIILGALATSAA   61 (290)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence            4468888899999999999998 6778888899999998877654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00