Psyllid ID: psy13666

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28

MPSSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGSM

cccccccccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHcccccccccEEEEEEccccccccccEEEEcccccccccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccc

cccccccccccccccccccccccccccccccccEEEEEEEEcccccHHHHHHHccccccccEEEEEEEcccccccccccEEEEEccHHHHHHHccccccccccccccccEEEEEEccccccccccccEcccccHHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccHHHHHHHccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccc

mpssihgmpgyvidpfpeweknrnhydsrdgmSVKYLILHYTVYNFAHIITAFtsnrahnlhsshyvisekegkylpggkviqivpDNMRAWHAGIGkwrrdrnlnsMSIGIHLVnggvvgekfrstnyypfdenqihtlgLLGKDivsqfkikpqyvlghtdiapgskmdpgplfpwgklyldygigawlspdeMTVEAIVRKfkparpyprkldRGIFLELLKAYGYNVTITNKRSVIRAFKThfsanqnperiyadittEDMFWAWALVAKYGSM

mpssihgmpgyvIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRkfkparpyprklDRGIFLELLKAYGYNVTITNKRSVIRAFkthfsanqnperiyADITTEDMFWAWALVAKYGSM

*********GYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKY***

*********GYVIDPFPEWE***********MSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGS*

*****HGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYGSM

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		278	2.2.26 [Sep-21-2011]
P75820		276	N-acetylmuramoyl-L-alanin	N/A	N/A	0.816	0.822	0.389	2e-35
P82973		187	1,6-anhydro-N-acetylmuram	no	N/A	0.338	0.502	0.326	2e-11
P13016		183	1,6-anhydro-N-acetylmuram	N/A	N/A	0.402	0.612	0.294	4e-11
E1W818		187	1,6-anhydro-N-acetylmuram	no	N/A	0.402	0.598	0.286	3e-10
P82974		187	1,6-anhydro-N-acetylmuram	N/A	N/A	0.384	0.572	0.290	6e-10
P0CL03		187	1,6-anhydro-N-acetylmuram	no	N/A	0.402	0.598	0.279	8e-10
P44624		184	1,6-anhydro-N-acetylmuram	yes	N/A	0.330	0.5	0.339	3e-09

>sp\|P75820\|AMID_ECOLI N-acetylmuramoyl-L-alanine amidase AmiD OS=Escherichia coli (strain K12) GN=amiD PE=1 SV=1	Back alignment and function desciption

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%)

Query: 34  VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
           +K L++HYT  +F   +   T  +     SSHY++     +Y    ++ Q+VP+   AWH
Sbjct: 44  IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99

Query: 94  AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
           AGI  WR    LN  SIGI L N G   +K     Y+ PF+  QI  L  L KDI++++ 
Sbjct: 100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157

Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
           IKP+ V+ H DIAP  K DPGPLFPW +L    GIGAW  PD   V   +    P  P  
Sbjct: 158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212

Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268
             +D    LELL  YGY+V    T   +R VI AF+ HF     P     +   E    A
Sbjct: 213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHF----RPTLYNGEADAETQAIA 266

Query: 269 WALVAKYGS 277
            AL+ KYG 
Sbjct: 267 EALLEKYGQ 275

Escherichia coli (strain K12) (taxid: 83333)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 2EC: 8

>sp\|P82973\|AMPD_ENTCL 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Enterobacter cloacae GN=ampD PE=3 SV=1	Back alignment and function description

>sp\|P13016\|AMPD_ECOLI 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Escherichia coli (strain K12) GN=ampD PE=2 SV=1	Back alignment and function description

>sp\|E1W818\|AMPD_SALTS 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Salmonella typhimurium (strain SL1344) GN=ampD PE=3 SV=1	Back alignment and function description

>sp\|P82974\|AMPD_CITFR 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Citrobacter freundii GN=ampD PE=1 SV=1	Back alignment and function description

>sp\|P0CL03\|AMPD_SALTY 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ampD PE=3 SV=1	Back alignment and function description

>sp\|P44624\|AMPD_HAEIN 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ampD PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		278
189502185		322	hypothetical protein Aasi_0795 [Candidat	0.953	0.822	0.457	3e-63
148284023		366	N-acetylmuramoyl-L-alanine amidase [Orie	0.971	0.737	0.456	6e-62
189184417		365	N-acetylmuramoyl-L-alanine amidase [Orie	0.971	0.739	0.456	2e-61
344923242		335	N-acetylmuramoyl-L-alanine amidase [Cand	0.960	0.797	0.424	8e-61
322832154		282	N-acetylmuramyl-L-alanine amidase, negat	0.784	0.773	0.403	3e-37
384257258		282	N-acetylmuramyl-L-alanine amidase, negat	0.773	0.762	0.404	4e-37
383189379		282	negative regulator of beta-lactamase exp	0.773	0.762	0.4	1e-35
408482547		276	N-acetylmuramoyl-L-alanine amidase [Pseu	0.877	0.884	0.366	1e-35
51596690		283	N-acetylmuramoyl-L-alanine amidase [Yers	0.809	0.795	0.393	4e-35
170024033		283	N-acetylmuramyl-L-alanine amidase, negat	0.809	0.795	0.393	4e-35

>gi\|189502185\|ref\|YP_001957902.1\| hypothetical protein Aasi_0795 [Candidatus Amoebophilus asiaticus 5a2] gi\|189497626\|gb\|ACE06173.1\| hypothetical protein Aasi_0795 [Candidatus Amoebophilus asiaticus 5a2]	Back alignment and taxonomy information

 Score =  248 bits (632), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/271 (45%), Positives = 161/271 (59%), Gaps = 6/271 (2%)

Query: 11  YVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISE 70
           Y +  FPE EKNRNHY  R    + YL++HYTV NF   +  FTS+      S+HYV++E
Sbjct: 51  YQVLEFPEEEKNRNHYGDRGTEDIAYLVMHYTVCNFPATMRLFTSDIPEGRVSAHYVVTE 110

Query: 71  KE-GKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNY 129
           +E  + + GG V Q+VP+   AWHAGI  WR ++ LN  SIG+  VN G VG++    N+
Sbjct: 111 EERERDVQGGMVFQVVPEEKTAWHAGISYWRGEQGLNLRSIGVENVNKGFVGKESEYPNW 170

Query: 130 YPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGA 189
           + FD+ QI +LG L + IV+ + I PQ V+GH DIAP  K DPG LFPW KLY  YG+GA
Sbjct: 171 FTFDKKQIRSLGTLSQYIVNSYNIAPQNVVGHADIAPTRKQDPGILFPWEKLYTHYGVGA 230

Query: 190 WLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVT-----ITNKRSVIRAFK 244
           WL+ DE   +AI  +F P    P+ +     L  L+AYGYN T          S+++AFK
Sbjct: 231 WLTEDERDEKAIAERFTPKEKLPQGISEAFLLTCLQAYGYNCTEVGYMTPENTSIVKAFK 290

Query: 245 THFSANQNPERIYADITTEDMFWAWALVAKY 275
            HFS NQ P    A I   DM W W L  KY
Sbjct: 291 AHFSRNQYPYTYDASIDRTDMLWVWGLSEKY 321

Source: Candidatus Amoebophilus asiaticus 5a2

Species: Candidatus Amoebophilus asiaticus

Genus: Candidatus Amoebophilus

Family:

Order:

Class:

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi\|148284023\|ref\|YP_001248113.1\| N-acetylmuramoyl-L-alanine amidase [Orientia tsutsugamushi str. Boryong] gi\|146739462\|emb\|CAM79114.1\| N-acetylmuramoyl-L-alanine amidase [Orientia tsutsugamushi str. Boryong]	Back alignment and taxonomy information

>gi\|189184417\|ref\|YP_001938202.1\| N-acetylmuramoyl-L-alanine amidase [Orientia tsutsugamushi str. Ikeda] gi\|189181188\|dbj\|BAG40968.1\| putative N-acetylmuramoyl-L-alanine amidase [Orientia tsutsugamushi str. Ikeda]	Back alignment and taxonomy information

>gi\|344923242\|ref\|ZP_08776703.1\| N-acetylmuramoyl-L-alanine amidase [Candidatus Odyssella thessalonicensis L13]	Back alignment and taxonomy information

>gi\|322832154\|ref\|YP_004212181.1\| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rahnella sp. Y9602] gi\|321167355\|gb\|ADW73054.1\| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rahnella sp. Y9602]	Back alignment and taxonomy information

>gi\|384257258\|ref\|YP_005401192.1\| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rahnella aquatilis HX2] gi\|380753234\|gb\|AFE57625.1\| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rahnella aquatilis HX2]	Back alignment and taxonomy information

>gi\|383189379\|ref\|YP_005199507.1\| negative regulator of beta-lactamase expression [Rahnella aquatilis CIP 78.65 = ATCC 33071] gi\|371587637\|gb\|AEX51367.1\| negative regulator of beta-lactamase expression [Rahnella aquatilis CIP 78.65 = ATCC 33071]	Back alignment and taxonomy information

>gi\|408482547\|ref\|ZP_11188766.1\| N-acetylmuramoyl-L-alanine amidase [Pseudomonas sp. R81]	Back alignment and taxonomy information

>gi|51596690|ref|YP_070881.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pseudotuberculosis IP 32953] gi|153949509|ref|YP_001400661.1| N-acetylmuramoyl-L-alanine amidase [Yersinia pseudotuberculosis IP 31758] gi|186895746|ref|YP_001872858.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Yersinia pseudotuberculosis PB1/+] gi|51589972|emb|CAH21604.1| probable N-acetylmuramoyl-L-alanine amidase [Yersinia pseudotuberculosis IP 32953] gi|152961004|gb|ABS48465.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Yersinia pseudotuberculosis IP 31758] gi|186698772|gb|ACC89401.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Yersinia pseudotuberculosis PB1/+]

Back alignment and taxonomy information

>gi\|170024033\|ref\|YP_001720538.1\| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Yersinia pseudotuberculosis YPIII] gi\|169750567\|gb\|ACA68085.1\| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Yersinia pseudotuberculosis YPIII]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		278
UNIPROTKB\|P75820		276	amiD [Escherichia coli K-12 (t	0.809	0.815	0.401	1.2e-35
TIGR_CMR\|CBU_0379		257	CBU_0379 "N-acetylmuramoyl-L-a	0.848	0.918	0.372	5.8e-34
TIGR_CMR\|SPO_2967		224	SPO_2967 "N-acetylmuramoyl-L-a	0.366	0.455	0.448	9.5e-18
UNIPROTKB\|Q48N97		182	ampD "N-acetyl-anhydromuramyl-	0.568	0.868	0.300	5.8e-13
UNIPROTKB\|Q602L1		215	ampD "N-acetyl-anhydromuramyl-	0.446	0.576	0.318	1.7e-12
TIGR_CMR\|SO_0421		181	SO_0421 "AmpD protein" [Shewan	0.338	0.519	0.349	1.2e-10
UNIPROTKB\|P13016		183	ampD "N-acetyl-anhydromuramyl-	0.330	0.502	0.313	2.1e-10
UNIPROTKB\|Q9KPE7		181	VC_2421 "AmpD protein" [Vibrio	0.323	0.497	0.326	1.7e-08
TIGR_CMR\|VC_2421		181	VC_2421 "ampD protein" [Vibrio	0.323	0.497	0.326	1.7e-08
TIGR_CMR\|CPS_4811		189	CPS_4811 "N-acetyl-anhydromura	0.320	0.470	0.411	1.9e-08

UNIPROTKB\|P75820 amiD [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 100/249 (40%), Positives = 131/249 (52%)

Query:    34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93
             +K L++HYT  +F   +   T  +     SSHY++     +Y    ++ Q+VP+   AWH
Sbjct:    44 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 99

Query:    94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152
             AGI  WR    LN  SIGI L N G   +K     Y+ PF+  QI  L  L KDI++++ 
Sbjct:   100 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 157

Query:   153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212
             IKP+ V+ H DIAP  K DPGPLFPW +L    GIGAW  PD   V   +    P  P  
Sbjct:   158 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 212

Query:   213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSAN-QNPERIYADITTEDMFW 267
               +D    LELL  YGY+V    T   +R VI AF+ HF     N E   AD  T+ +  
Sbjct:   213 --VDTASLLELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGE---ADAETQAI-- 265

Query:   268 AWALVAKYG 276
             A AL+ KYG
Sbjct:   266 AEALLEKYG 274

GO:0008745 "N-acetylmuramoyl-L-alanine amidase activity" evidence=IEA;IDA

GO:0019867 "outer membrane" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0009279 "cell outer membrane" evidence=IEA

GO:0071555 "cell wall organization" evidence=IEA

GO:0009253 "peptidoglycan catabolic process" evidence=IEA;IDA

GO:0009392 "N-acetyl-anhydromuramoyl-L-alanine amidase activity" evidence=IDA

TIGR_CMR\|CBU_0379 CBU_0379 "N-acetylmuramoyl-L-alanine amidase" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_2967 SPO_2967 "N-acetylmuramoyl-L-alanine amidase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

UNIPROTKB\|Q48N97 ampD "N-acetyl-anhydromuramyl-L-alanine amidase AmpD" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]	Back alignment and assigned GO terms

UNIPROTKB\|Q602L1 ampD "N-acetyl-anhydromuramyl-L-alanine amidase" [Methylococcus capsulatus str. Bath (taxid:243233)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_0421 SO_0421 "AmpD protein" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|P13016 ampD "N-acetyl-anhydromuramyl-L-alanine-amidase" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KPE7 VC_2421 "AmpD protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2421 VC_2421 "ampD protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_4811 CPS_4811 "N-acetyl-anhydromuramyl-L-alanine amidase" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1.28	0.824
3rd Layer	3.5.1	0.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		278
COG3023		257	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine a	1e-44
PRK11789		185	PRK11789, PRK11789, N-acetyl-anhydromuranmyl-L-ala	1e-20
cd06583		126	cd06583, PGRP, Peptidoglycan recognition proteins	3e-17
pfam01510		114	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine a	4e-17
smart00644		126	smart00644, Ami_2, Ami_2 domain	3e-09

>gnl\|CDD\|225567 COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

 Score =  151 bits (383), Expect = 1e-44
 Identities = 92/278 (33%), Positives = 126/278 (45%), Gaps = 42/278 (15%)

Query: 6   HGMPGYVIDPFPEWEKNRNHYDSR-DGMSVKYLILHYTV-YNFAHIITAFTSNRAHNLHS 63
              P   I P      N         G    +++LHYT   +       F         S
Sbjct: 13  APSPHIDIRPSLLVSHN---ISLPPGGFGPDFIVLHYTGALDPKAHP--FFLTIPELRVS 67

Query: 64  SHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEK 123
           +HY+I          G+++Q+VP+  RAWHAG+  W+     N  SIGI LVN G     
Sbjct: 68  AHYLIDRD-------GRIVQLVPEERRAWHAGVSSWQGRERCNDFSIGIELVNRG----- 115

Query: 124 FRSTNYYPFDENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
               +  P+ E QI  L  L KDI++++  I P+ ++GH+DIAPG K DPGPLFPW +L 
Sbjct: 116 -TDASGPPYTEAQIQALIALLKDIIARYPNITPERIVGHSDIAPGRKTDPGPLFPWKRLA 174

Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTI----TNKRS 238
              GIGAWL        A V+K+       +  D     E+L  YGY V I       + 
Sbjct: 175 EALGIGAWLDT------AQVQKYLALL---KGEDVAALQEMLARYGYGVEIGVFDQETQQ 225

Query: 239 VIRAFKTHFSANQNPERI--YADITTEDMFWAWALVAK 274
           V+RAF+ HF     P      AD+ T  +    AL+ K
Sbjct: 226 VVRAFQMHF----RPGLYDGEADVETIAI--LQALLEK 257

Length = 257

>gnl\|CDD\|236984 PRK11789, PRK11789, N-acetyl-anhydromuranmyl-L-alanine amidase; Provisional	Back alignment and domain information

>gnl\|CDD\|133475 cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	Back alignment and domain information

>gnl\|CDD\|216541 pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase	Back alignment and domain information

>gnl\|CDD\|214760 smart00644, Ami_2, Ami_2 domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		278
COG3023		257	ampD N-acetyl-anhydromuramyl-L-alanine amidase [Ce	100.0
PRK11789		185	N-acetyl-anhydromuranmyl-L-alanine amidase; Provis	100.0
PF01510		132	Amidase_2: N-acetylmuramoyl-L-alanine amidase; Int	99.96
cd06583		126	PGRP Peptidoglycan recognition proteins (PGRPs) ar	99.95
smart00644		126	Ami_2 Ami_2.	99.93
PHA00447		142	lysozyme	99.93
smart00701		142	PGRP Animal peptidoglycan recognition proteins hom	99.8
COG5632		302	N-acetylmuramoyl-L-alanine amidase [Cell envelope	99.57
PF01471		57	PG_binding_1: Putative peptidoglycan binding domai	98.63
TIGR02869		201	spore_SleB spore cortex-lytic enzyme. Members of t	97.64
COG3409		185	Putative peptidoglycan-binding domain-containing p	96.64
PRK10594		608	murein L,D-transpeptidase; Provisional	95.11
COG3409		185	Putative peptidoglycan-binding domain-containing p	92.08
COG2989		561	Uncharacterized protein conserved in bacteria [Fun	90.7

>COG3023 ampD N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

Probab=100.00  E-value=5.9e-68  Score=470.73  Aligned_cols=221  Identities=38%  Similarity=0.673  Sum_probs=195.8

Q ss_pred             CCCCC-CCCccEEEEEecCC-CCHHHHHHHHcCCCCCcceeEEEecCCCCCCCCCcEEEEeecCCccccccCCCCCCCCC
Q psy13666         26 YDSRD-GMSVKYLILHYTVY-NFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDR  103 (278)
Q Consensus        26 ~~~R~-~~~i~~IViH~Ta~-~~~~s~~~~~~~~~~~~vSaHy~I~~d~~~~~~~G~I~qlV~e~~~AwHAG~s~w~g~~  103 (278)
                      ++.++ +.++++||+|||++ +.+.+...++.  +..+||+||+|+++       |+|+|+||+++||||||+|.|+|+.
T Consensus        30 ~~~~~~~~~~~~iv~hytg~~d~~~~~~~l~~--~~~~VSaHylI~~d-------g~I~q~Vp~~~rAWHAGvS~w~Gr~  100 (257)
T COG3023          30 ISLPPGGFGPDFIVLHYTGALDPKAHPFFLTI--PELRVSAHYLIDRD-------GRIVQLVPEERRAWHAGVSSWQGRE  100 (257)
T ss_pred             cCCCCccCCCCEEEEeeccccCcccCchheec--cCCceeeEEEECCC-------CcEEeecCchhhhhhcccccccccc
Confidence            55666 88999999999955 56677777663  67899999999999       9999999999999999999999999


Q ss_pred             CCCCceEEEEEecCCccCcccCCCCCCCCcHHHHHHHHHHHHHHHHHh-CCCCCceeecCCcCCCCCCCCCCCCChHHHH
Q psy13666        104 NLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQF-KIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY  182 (278)
Q Consensus       104 ~~N~~SIGIEivn~G~~~~~~~~~~~~~~t~aQi~al~~L~~~L~~ry-~I~~~~VvgH~Diap~rK~DPG~~FpW~~L~  182 (278)
                      ++|++||||||+|+|...      ...|||++||++|++|+++|++|| +|++.+|+||+||+|+||.|||+.|||++|+
T Consensus       101 ~~Nd~SIGIElvN~G~~~------~~~py~~AQiqal~~L~k~i~~ryP~I~~~~I~GHsDIAP~RK~DPG~~FpWk~l~  174 (257)
T COG3023         101 RCNDFSIGIELVNRGTDA------SGPPYTEAQIQALIALLKDIIARYPNITPERIVGHSDIAPGRKTDPGPLFPWKRLA  174 (257)
T ss_pred             cccCCceeEEEeeCCCCC------CCCCCCHHHHHHHHHHHHHHHHHccCCCHHHcccccccCcccCCCCCCCCCHHHHH
Confidence            999999999999998742      237999999999999999999999 7999999999999999999999999999999


Q ss_pred             HHhCCCCcCCcchhhHHHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCCCCC--C--hHHHHHHHHhhhccCCCCCcCCC
Q psy13666        183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT--N--KRSVIRAFKTHFSANQNPERIYA  258 (278)
Q Consensus       183 ~~~gig~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~q~~L~~~GY~~~~~--~--~~~~v~aFQ~hf~~~~~~~~~dG  258 (278)
                      +.+|+|+|++++++.....  .+       .+++|.+||++|++|||+++.+  |  ++.||+|||||||    |.++||
T Consensus       175 ~~~gigaw~~~~~~~~~~~--~~-------~~~~v~~lq~~L~~YGY~v~~~~~d~~t~~vv~aFQ~hfr----p~~~dg  241 (257)
T COG3023         175 EALGIGAWLDTAQVQKYLA--LL-------KGEDVAALQEMLARYGYGVEIGVFDQETQQVVRAFQMHFR----PGLYDG  241 (257)
T ss_pred             hhcCcccCCcHhhhhhhhh--hh-------ccCCHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHHHhC----CCCCCC
Confidence            8789999999875543221  11       1278999999999999999873  2  3999999999997    899999


Q ss_pred             CCChHHHHHHHHHHhh
Q psy13666        259 DITTEDMFWAWALVAK  274 (278)
Q Consensus       259 ~~~~~T~a~l~aL~~k  274 (278)
                      ++|.||.|||.||++|
T Consensus       242 ~~d~et~a~l~al~~k  257 (257)
T COG3023         242 EADVETIAILQALLEK  257 (257)
T ss_pred             CCChHHHHHHHHHhcC
Confidence            9999999999999986

>PRK11789 N-acetyl-anhydromuranmyl-L-alanine amidase; Provisional	Back alignment and domain information

>PF01510 Amidase_2: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002502 Proteins families containing this domain include zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity 3	Back alignment and domain information

>cd06583 PGRP Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	Back alignment and domain information

>smart00644 Ami_2 Ami_2	Back alignment and domain information

>PHA00447 lysozyme	Back alignment and domain information

>smart00701 PGRP Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme	Back alignment and domain information

>COG5632 N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure	Back alignment and domain information

>TIGR02869 spore_SleB spore cortex-lytic enzyme	Back alignment and domain information

>COG3409 Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK10594 murein L,D-transpeptidase; Provisional	Back alignment and domain information

>COG3409 Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>COG2989 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		278
2bh7_A		261	Crystal Structure Of A Semet Derivative Of Amid At		1e-36
3d2y_A		261	Complex Of The N-Acetylmuramyl-L-Alanine Amidase Am		1e-36
2y2b_A		187	Crystal Structure Of Ampd In Complex With Reaction		5e-11
2y28_A		187	Crystal Structure Of Se-Met Ampd Derivative Length		8e-11

>pdb|2BH7|A Chain A, Crystal Structure Of A Semet Derivative Of Amid At 2.2 Angstroms Length = 261

Back alignment and structure

Iteration: 1

Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/249 (38%), Positives = 127/249 (51%), Gaps = 22/249 (8%) Query: 34 VKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWH 93 +K L++HYT +F + T + SSHY++ +Y ++ Q+VP+ AWH Sbjct: 29 IKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 84 Query: 94 AGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYY-PFDENQIHTLGLLGKDIVSQFK 152 AGI WR LN SIGI L N G +K Y+ PF+ QI L L KDI++++ Sbjct: 85 AGISAWRGATRLNDTSIGIELENRG--WQKSAGVKYFAPFEPAQIQALIPLAKDIIARYH 142 Query: 153 IKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAWLSPDEMTVEAIVRKFKPARPYP 212 IKP+ V+ H DIAP K DPGPLFPW +L GIGAW PD V + P P Sbjct: 143 IKPENVVAHADIAPQRKDDPGPLFPWQQL-AQQGIGAW--PDAQRVNFYLAGRAPHTP-- 197 Query: 213 RKLDRGIFLELLKAYGYNV----TITNKRSVIRAFKTHFSANQNPERIYADITTEDMFWA 268 +D LELL YGY+V T +R VI AF+ HF P + E A Sbjct: 198 --VDTASLLELLARYGYDVKPDXTPREQRRVIXAFQXHF----RPTLYNGEADAETQAIA 251 Query: 269 WALVAKYGS 277 AL+ KYG Sbjct: 252 EALLEKYGQ 260

PyMOL of 2bh7

>pdb|3D2Y|A Chain A, Complex Of The N-Acetylmuramyl-L-Alanine Amidase Amid From E.Coli With The Substrate Anhydro-N-Acetylmuramic Acid-L-Ala-D-Gamma-Glu-L-Lys Length = 261

Back alignment and structure

>pdb|2Y2B|A Chain A, Crystal Structure Of Ampd In Complex With Reaction Products Length = 187

Back alignment and structure

>pdb|2Y28|A Chain A, Crystal Structure Of Se-Met Ampd Derivative Length = 187

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		278
3d2y_A		261	N-acetylmuramoyl-L-alanine amidase AMID; zinc amid	3e-72
1j3g_A		187	AMPD protein, AMPD; mixed alpha-beta, hydrolase; N	1e-51
3hma_A		157	N-acetylmuramoyl-L-alanine amidase XLYA; endolysin	3e-24
1yb0_A		159	Prophage lambdaba02, N-acetylmuramoyl-L-alanine am	4e-21
3lat_A		213	Bifunctional autolysin; amidase, ATLE, peptidoglyc	4e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
2f2l_A		167	Peptidoglycan-recognition protein-LC isoform LCA;	2e-04

>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD, acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A {Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A Length = 261	Back alignment and structure

 Score =  221 bits (565), Expect = 3e-72
 Identities = 98/278 (35%), Positives = 129/278 (46%), Gaps = 28/278 (10%)

Query: 3   SSIHGMPGYVIDPFPEWEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLH 62
             I    GY +D                   +K L++HYT  +F   +   T  +     
Sbjct: 6   KGIVEKEGYQLD--------TRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQV---- 53

Query: 63  SSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGE 122
           SSHY++     +Y    ++ Q+VP+   AWHAGI  WR    LN  SIGI L N G   +
Sbjct: 54  SSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENRG-WQK 112

Query: 123 KFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLY 182
                 + PF+  QI  L  L KDI++++ IKP+ V+ H DIAP  K DPGPLFPW +L 
Sbjct: 113 SAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLA 172

Query: 183 LDYGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTIT----NKRS 238
              GIGAW  PD   V   +    P  P    +D    LELL  YGY+V        +R 
Sbjct: 173 -QQGIGAW--PDAQRVNFYLAGRAPHTP----VDTASLLELLARYGYDVKPDMTPREQRR 225

Query: 239 VIRAFKTHFSANQNPERIYADITTEDMFWAWALVAKYG 276
           VI AF+ HF     P     +   E    A AL+ KYG
Sbjct: 226 VIMAFQMHF----RPTLYNGEADAETQAIAEALLEKYG 259

PyMOL of 3d2y

>1j3g_A AMPD protein, AMPD; mixed alpha-beta, hydrolase; NMR {Citrobacter freundii} SCOP: d.118.1.1 PDB: 2y28_A 2y2b_A* 2y2c_A 2y2d_A 2y2e_A Length = 187	Back alignment and structure

>1yb0_A Prophage lambdaba02, N-acetylmuramoyl-L-alanine amidase, family 2; PLYL, E.C.3.5.1.28, hydrolase; 1.86A {Bacillus anthracis} SCOP: d.118.1.1 PDB: 2ar3_A 2l47_A Length = 159	Back alignment and structure

>3lat_A Bifunctional autolysin; amidase, ATLE, peptidoglycan hydrolase, cell WALL biogenesis/degradation, multifunctional enzyme, secreted; 1.70A {Staphylococcus epidermidis} Length = 213	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2f2l_A Peptidoglycan-recognition protein-LC isoform LCA; protein-peptidoglycan complex, membrane protein, immune SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila melanogaster} SCOP: d.118.1.1 PDB: 1z6i_A* Length = 167	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		278
3d2y_A		261	N-acetylmuramoyl-L-alanine amidase AMID; zinc amid	100.0
1j3g_A		187	AMPD protein, AMPD; mixed alpha-beta, hydrolase; N	100.0
3hma_A		157	N-acetylmuramoyl-L-alanine amidase XLYA; endolysin	100.0
1yb0_A		159	Prophage lambdaba02, N-acetylmuramoyl-L-alanine am	100.0
1lba_A		146	T7 lysozyme; hydrolase(acting on linear amides); 2	99.97
3lat_A		213	Bifunctional autolysin; amidase, ATLE, peptidoglyc	99.97
2cb3_A		175	Peptidoglycan-recognition protein-LE; PGRP, trache	99.96
1sk4_A		163	Peptidoglycan recognition protein I-alpha; alpha/b	99.96
2rkq_A		169	Peptidoglycan-recognition protein-SD; innate immun	99.96
2xz4_A		180	Peptidoglycan-recognition protein LF; immune syste	99.96
1oht_A		215	CG14704 protein; peptidoglycan-recognition protein	99.95
1yck_A		175	Peptidoglycan recognition protein; PGRP-S, innate	99.95
2f2l_X		167	Peptidoglycan recognition protein-LC isoform LCX;	99.95
1sxr_A		183	Peptidoglycan recognition protein SA CG11709-PA; p	99.94
1s2j_A		209	Peptidoglycan recognition protein SA CG11709-PA; m	99.94
2f2l_A		167	Peptidoglycan-recognition protein-LC isoform LCA;	99.89
3ep1_A		176	PGRP-HD - peptidoglycan recognition protein homolo	99.71
2xz8_A		150	Peptidoglycan-recognition protein LF; immune syste	99.65
3bkh_A		268	Phikz144, lytic transglycosylase; bacteriophage, e	98.08
1lbu_A		213	Muramoyl-pentapeptide carboxypeptidase; hydrolase,	98.06
4fet_B		222	Spore cortex-lytic enzyme prepeptide; transglycosy	97.79
1l6j_A		425	Matrix metalloproteinase-9; twisted beta sheet fla	94.71
1eak_A		421	72 kDa type IV collagenase; hydrolase-hydrolase in	93.74
1slm_A		255	Stromelysin-1; hydrolase, metalloprotease, fibrobl	93.41
1ck7_A		631	Protein (gelatinase A); hydrolase (metalloprotease	91.65
1su3_A		450	Interstitial collagenase; prodomain, hemopexin dom	89.71
2ikb_A		167	Hypothetical protein NMB1012; structural genomics,	85.42

>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD, acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A {Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A	Back alignment and structure

Probab=100.00  E-value=7e-63  Score=448.29  Aligned_cols=235  Identities=38%  Similarity=0.649  Sum_probs=199.0

Q ss_pred             CCCCC-CCCccEEEEEecCCCCHHHHHHHHcCCCCCcceeEEEecCCCCCCCCCcEEEEeecCCccccccCCCCCCCCCC
Q psy13666         26 YDSRD-GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRN  104 (278)
Q Consensus        26 ~~~R~-~~~i~~IViH~Ta~~~~~s~~~~~~~~~~~~vSaHy~I~~d~~~~~~~G~I~qlV~e~~~AwHAG~s~w~g~~~  104 (278)
                      +.+++ +.+|++||||||+++...++++|++    .+||+||+|+++.+...++|+|+|+||++++|||||.|.|.|+.+
T Consensus        20 ~~s~~~~~~i~~IViH~Ta~~~~~~~~~l~~----~~vSaHy~I~~dG~~~~~~~~I~q~v~~~~~AwHAG~s~w~g~~~   95 (261)
T 3d2y_A           20 RQAQAAYPRIKVLVIHYTADDFDSSLATLTD----KQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATR   95 (261)
T ss_dssp             SCCSCCCCSCCEEEEEECSSCHHHHHHHHTS----SSCCCSEEECSSCCEETTEECCEECSCTTSCCSCSCSCEETTEEC
T ss_pred             ccCCCCCCCCCEEEEEecCCCCHHHHHHHcC----CCceeEEEEcCCCccccCCCeEEEecCCCceeeeecccccCCCCC
Confidence            44544 6789999999999998888888864    789999999999211122236999999999999999999999999


Q ss_pred             CCCceEEEEEecCCccCcccCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCceeecCCcCCCCCCCCCCCCChHHHHHH
Q psy13666        105 LNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLD  184 (278)
Q Consensus       105 ~N~~SIGIEivn~G~~~~~~~~~~~~~~t~aQi~al~~L~~~L~~ry~I~~~~VvgH~Diap~rK~DPG~~FpW~~L~~~  184 (278)
                      +|++|||||+||.|..... .+..+.+||++|+++|++|+++||++|+|++.+|+||+|++|+||.|||+.|||++|+++
T Consensus        96 ~N~~SIGIE~~n~G~~~~~-g~~~~~~~t~aQ~~al~~L~~~L~~~y~i~~~~V~gH~diap~rK~dPG~~f~w~~l~~~  174 (261)
T 3d2y_A           96 LNDTSIGIELENRGWQKSA-GVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQQ  174 (261)
T ss_dssp             GGGGEEEEEECCCCEEEET-TEEEECCCCHHHHHHHHHHHHHHHHHHTCCGGGEEEHHHHSTTTCCTTCTTSCHHHHHHT
T ss_pred             CCCCeEEEEEecCCCcccc-CCcCCCCCCHHHHHHHHHHHHHHHHHcCCCcccEecccccCCCCCCCCCCCcCHHHHHHh
Confidence            9999999999998763211 011457899999999999999999999999999999999999999999999999999865


Q ss_pred             hCCCCcCCcchhhHHHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCCCCCC-----hHHHHHHHHhhhccCCCCCcCCCC
Q psy13666        185 YGIGAWLSPDEMTVEAIVRKFKPARPYPRKLDRGIFLELLKAYGYNVTITN-----KRSVIRAFKTHFSANQNPERIYAD  259 (278)
Q Consensus       185 ~gig~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~q~~L~~~GY~~~~~~-----~~~~v~aFQ~hf~~~~~~~~~dG~  259 (278)
                       |+|+|+++.++  ..++..+    ....+++|..||++|+++||.+ .++     +++||+|||+|||    |+.+||+
T Consensus       175 -gig~w~~~~~~--~~~~~~~----~~~~g~~v~~lq~~L~~~GY~~-~dg~~~~~t~~aV~aFQ~~~r----~l~~dGi  242 (261)
T 3d2y_A          175 -GIGAWPDAQRV--NFYLAGR----APHTPVDTASLLELLARYGYDV-KPDMTPREQRRVIMAFQMHFR----PTLYNGE  242 (261)
T ss_dssp             -TCSCCCCHHHH--HHHHTTC----CTTCBCCHHHHHHHHHHHTCCC-CSSCCHHHHHHHHHHHHHHHC----TTCCSCC
T ss_pred             -CcCCCcCcchh--hhhhhcc----ccccchHHHHHHHHHHHcCCCC-CCCccCHHHHHHHHHHHHHcC----CCCCCCC
Confidence             99999988643  2343332    2345789999999999999998 442     4899999999997    8999999


Q ss_pred             CChHHHHHHHHHHhhhCC
Q psy13666        260 ITTEDMFWAWALVAKYGS  277 (278)
Q Consensus       260 ~~~~T~a~l~aL~~ky~~  277 (278)
                      +|++|+++|.+|++||++
T Consensus       243 ~d~~T~~~L~~l~~ky~~  260 (261)
T 3d2y_A          243 ADAETQAIAEALLEKYGQ  260 (261)
T ss_dssp             CBHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHhccC
Confidence            999999999999999985

PyMOL of 3d2y

>1j3g_A AMPD protein, AMPD; mixed alpha-beta, hydrolase; NMR {Citrobacter freundii} SCOP: d.118.1.1 PDB: 2y28_A 2y2b_A* 2y2c_A 2y2d_A 2y2e_A	Back alignment and structure

>1yb0_A Prophage lambdaba02, N-acetylmuramoyl-L-alanine amidase, family 2; PLYL, E.C.3.5.1.28, hydrolase; 1.86A {Bacillus anthracis} SCOP: d.118.1.1 PDB: 2ar3_A 2l47_A	Back alignment and structure

>1lba_A T7 lysozyme; hydrolase(acting on linear amides); 2.20A {Enterobacteria phage T7} SCOP: d.118.1.1 PDB: 1aro_L	Back alignment and structure

>3lat_A Bifunctional autolysin; amidase, ATLE, peptidoglycan hydrolase, cell WALL biogenesis/degradation, multifunctional enzyme, secreted; 1.70A {Staphylococcus epidermidis}	Back alignment and structure

>2cb3_A Peptidoglycan-recognition protein-LE; PGRP, tracheal cytotoxin, innate immunity, immune system; HET: MLD; 2.40A {Drosophila melanogaster} SCOP: d.118.1.1	Back alignment and structure

>1sk4_A Peptidoglycan recognition protein I-alpha; alpha/beta MIX, immune system; 1.65A {Homo sapiens} SCOP: d.118.1.1 PDB: 2aph_A* 1sk3_A* 1twq_A* 2eav_A 2eax_A*	Back alignment and structure

>2rkq_A Peptidoglycan-recognition protein-SD; innate immunity, TOLL, pattern recognition, PGRP, glycoprotein, immune response, secreted,; 1.50A {Drosophila melanogaster}	Back alignment and structure

>2xz4_A Peptidoglycan-recognition protein LF; immune system, innate immunity; HET: 1PG; 1.72A {Drosophila melanogaster}	Back alignment and structure

>1oht_A CG14704 protein; peptidoglycan-recognition protein-LB isoform 2, hydrolase; HET: TLA; 2.0A {Drosophila melanogaster} SCOP: d.118.1.1	Back alignment and structure

>1yck_A Peptidoglycan recognition protein; PGRP-S, innate immunity, pattern recognition proteins, immune syste; 1.70A {Homo sapiens} SCOP: d.118.1.1 PDB: 3mu9_A* 2r2k_A 2z9n_A* 2r90_A* 3c93_A* 3cg9_A* 3cor_A* 3cxa_A* 3c2x_A* 3ng4_A* 3nkw_A* 3nno_A* 3nw3_A* 3o4k_A* 3ogx_A* 3olk_A* 3qj1_A* 3qs0_A* 3qv4_A* 3rt4_A* ...	Back alignment and structure

>2f2l_X Peptidoglycan recognition protein-LC isoform LCX; protein-peptidoglycan complex, membrane protein, immune SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila melanogaster} SCOP: d.118.1.1	Back alignment and structure

>1sxr_A Peptidoglycan recognition protein SA CG11709-PA; pattern recognition receptor, innate immunity pathway, immune system; 1.56A {Drosophila melanogaster} SCOP: d.118.1.1	Back alignment and structure

>1s2j_A Peptidoglycan recognition protein SA CG11709-PA; mixed beta-sheet, PI-helix (ONE turn), hydrolase; 2.20A {Drosophila melanogaster} SCOP: d.118.1.1	Back alignment and structure

>2f2l_A Peptidoglycan-recognition protein-LC isoform LCA; protein-peptidoglycan complex, membrane protein, immune SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila melanogaster} SCOP: d.118.1.1 PDB: 1z6i_A*	Back alignment and structure

>3ep1_A PGRP-HD - peptidoglycan recognition protein homologue; immune system, thermophIle, model system; 2.10A {Alvinella pompejana}	Back alignment and structure

>2xz8_A Peptidoglycan-recognition protein LF; immune system, innate immunity, PGRP-LF; HET: PG4; 1.94A {Drosophila melanogaster}	Back alignment and structure

>3bkh_A Phikz144, lytic transglycosylase; bacteriophage, endolysin, peptidoglycan, cell WALL degradation, lysozyme, hydrolase; 2.50A {Pseudomonas phage phikz} PDB: 3bkv_A*	Back alignment and structure

>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1	Back alignment and structure

>4fet_B Spore cortex-lytic enzyme prepeptide; transglycosylase, cortex hydrolase domain, sodium ION, seMet hydrolase; 1.91A {Bacillus anthracis}	Back alignment and structure

>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2	Back alignment and structure

>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A	Back alignment and structure

>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11	Back alignment and structure

>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A	Back alignment and structure

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*	Back alignment and structure

>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, PR structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.2.1.9 PDB: 2is5_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		278
d2bgxa2		173	d.118.1.1 (A:7-179) Probable N-acetylmuramoyl-L-al	5e-35
d1j3ga_		187	d.118.1.1 (A:) AmpD protein {Citrobacter freundii	6e-23
d1ycka1		167	d.118.1.1 (A:9-175) Peptidoglycan recognition prot	8e-13
d1yb0a1		157	d.118.1.1 (A:1-157) N-acetylmuramoyl-L-alanine ami	3e-11
d2bgxa1		81	a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-a	5e-11
d2f2la1		166	d.118.1.1 (A:355-520) Peptidoglycan-recognition pr	6e-11
d1ohta_		174	d.118.1.1 (A:) Peptidoglycan recognition protein-l	1e-09
d1sk4a_		163	d.118.1.1 (A:) Peptidoglycan recognition protein I	5e-09
d1sxra_		173	d.118.1.1 (A:) Peptidoglycan-recognition protein-S	6e-09
d2cb3a1		171	d.118.1.1 (A:174-344) Peptidoglycan-recognition pr	2e-08
d2f2lx1		165	d.118.1.1 (X:335-499) Peptidoglycan-recognition pr	3e-08
d1lbaa_		146	d.118.1.1 (A:) Bacteriophage T7 lysozyme (Zn amida	7e-06

>d2bgxa2 d.118.1.1 (A:7-179) Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 173	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: N-acetylmuramoyl-L-alanine amidase-like
superfamily: N-acetylmuramoyl-L-alanine amidase-like
family: N-acetylmuramoyl-L-alanine amidase-like
domain: Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  122 bits (306), Expect = 5e-35
 Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 6/172 (3%)

Query: 19  WEKNRNHYDSRDGMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPG 78
           ++ +           +K L++HYT  +F   +   T  +     SSHY++     +Y   
Sbjct: 8   YQLDTRRQAQAAYPRIKVLVIHYTADDFDSSLATLTDKQV----SSHYLVPAVPPRYNGK 63

Query: 79  GKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSIGIHLVNGGVVGEKFRSTNYYPFDENQIH 138
            ++ Q+VP+   AWHAGI  WR    LN  SIGI L N     +      + PF+  QI 
Sbjct: 64  PRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIELENR-GWQKSAGVKYFAPFEPAQIQ 122

Query: 139 TLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW 190
            L  L KDI++++ IKP+ V+ H DIAP  K DPGPLFPW +L    GIGAW
Sbjct: 123 ALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLA-QQGIGAW 173

PyMOL of d2bgxa2

>d1j3ga_ d.118.1.1 (A:) AmpD protein {Citrobacter freundii [TaxId: 546]} Length = 187	Back information, alignment and structure

>d1ycka1 d.118.1.1 (A:9-175) Peptidoglycan recognition protein, PGRP-S {Human (Homo sapiens) [TaxId: 9606]} Length = 167	Back information, alignment and structure

>d1yb0a1 d.118.1.1 (A:1-157) N-acetylmuramoyl-L-alanine amidase PlyG {Bacillus anthracis [TaxId: 1392]} Length = 157	Back information, alignment and structure

>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 81	Back information, alignment and structure

>d2f2la1 d.118.1.1 (A:355-520) Peptidoglycan-recognition protein-LC {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 166	Back information, alignment and structure

>d1ohta_ d.118.1.1 (A:) Peptidoglycan recognition protein-lb (Cg14704) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 174	Back information, alignment and structure

>d1sk4a_ d.118.1.1 (A:) Peptidoglycan recognition protein I-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 163	Back information, alignment and structure

>d1sxra_ d.118.1.1 (A:) Peptidoglycan-recognition protein-SA (Cg11709) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 173	Back information, alignment and structure

>d2cb3a1 d.118.1.1 (A:174-344) Peptidoglycan-recognition protein-LE {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 171	Back information, alignment and structure

>d2f2lx1 d.118.1.1 (X:335-499) Peptidoglycan-recognition protein-LC {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 165	Back information, alignment and structure

>d1lbaa_ d.118.1.1 (A:) Bacteriophage T7 lysozyme (Zn amidase) {Bacteriophage T7 [TaxId: 10760]} Length = 146	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		278
d2bgxa2		173	Probable N-acetylmuramoyl-L-alanine amidase YbjR,	100.0
d1j3ga_		187	AmpD protein {Citrobacter freundii [TaxId: 546]}	100.0
d1yb0a1		157	N-acetylmuramoyl-L-alanine amidase PlyG {Bacillus	99.97
d1lbaa_		146	Bacteriophage T7 lysozyme (Zn amidase) {Bacterioph	99.94
d2cb3a1		171	Peptidoglycan-recognition protein-LE {Fruit fly (D	99.93
d1sxra_		173	Peptidoglycan-recognition protein-SA (Cg11709) {Fr	99.93
d1ycka1		167	Peptidoglycan recognition protein, PGRP-S {Human (	99.92
d1ohta_		174	Peptidoglycan recognition protein-lb (Cg14704) {Fr	99.92
d2f2la1		166	Peptidoglycan-recognition protein-LC {Fruit fly (D	99.92
d2f2lx1		165	Peptidoglycan-recognition protein-LC {Fruit fly (D	99.91
d1sk4a_		163	Peptidoglycan recognition protein I-alpha {Human (	99.9
d2bgxa1		81	Probable N-acetylmuramoyl-L-alanine amidase YbjR,	99.69
d1lbua1		83	Zn2+ DD-carboxypeptidase, N-terminal domain {Strep	98.65
d1l6ja1		77	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	97.38
d1su3a1		67	Fibroblast collagenase (MMP-1) {Human (Homo sapien	96.8
d1eaka1		76	Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId:	96.69
d1slma1		65	Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro	96.68

>d2bgxa2 d.118.1.1 (A:7-179) Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: N-acetylmuramoyl-L-alanine amidase-like
superfamily: N-acetylmuramoyl-L-alanine amidase-like
family: N-acetylmuramoyl-L-alanine amidase-like
domain: Probable N-acetylmuramoyl-L-alanine amidase YbjR, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-51  Score=351.38  Aligned_cols=154  Identities=42%  Similarity=0.755  Sum_probs=135.7

Q ss_pred             CCCccEEEEEecCCCCHHHHHHHHcCCCCCcceeEEEecCCCCCCCCCcEEEEeecCCccccccCCCCCCCCCCCCCceE
Q psy13666         31 GMSVKYLILHYTVYNFAHIITAFTSNRAHNLHSSHYVISEKEGKYLPGGKVIQIVPDNMRAWHAGIGKWRRDRNLNSMSI  110 (278)
Q Consensus        31 ~~~i~~IViH~Ta~~~~~s~~~~~~~~~~~~vSaHy~I~~d~~~~~~~G~I~qlV~e~~~AwHAG~s~w~g~~~~N~~SI  110 (278)
                      ..+|++||||||+++.+.++++|++    .+|||||+|++.......||+|+||||++++|||||.|.|.+.+++|++||
T Consensus        20 ~~rI~~IViH~Ta~~~~~a~~~l~~----~~vSaHylI~~~~~~~d~dG~I~qlV~e~~~AWHAG~s~w~~~~~~N~~SI   95 (173)
T d2bgxa2          20 YPRIKVLVIHYTADDFDSSLATLTD----KQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSI   95 (173)
T ss_dssp             CCSCCEEEEEECSSCHHHHHHHTTS----SSCCCSEEECSSCCEETTEECCEECSCTTSCCSCSCSCEETTEECTTTTEE
T ss_pred             CCCCCEEEEeeCCCChHHHHHHhcC----CCeeEEEEecCCccccCCCccEEEEeccccccccccccccccccchhhhhe
Confidence            6789999999999998889988874    689999999874333334599999999999999999999999999999999


Q ss_pred             EEEEecCCccCcccCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCceeecCCcCCCCCCCCCCCCChHHHHHHhCCCCc
Q psy13666        111 GIHLVNGGVVGEKFRSTNYYPFDENQIHTLGLLGKDIVSQFKIKPQYVLGHTDIAPGSKMDPGPLFPWGKLYLDYGIGAW  190 (278)
Q Consensus       111 GIEivn~G~~~~~~~~~~~~~~t~aQi~al~~L~~~L~~ry~I~~~~VvgH~Diap~rK~DPG~~FpW~~L~~~~gig~w  190 (278)
                      ||||||.|..... ....+.+||++|+++|++|+++||++|+|++.+|+||+||+|+||.|||+.|||++|++ .|||+|
T Consensus        96 GIEl~n~g~~~~~-~~~~~~~~t~aQ~~~l~~L~~~l~~~y~I~~~~IvgH~diap~RK~DPG~~FpW~~l~~-~~~g~w  173 (173)
T d2bgxa2          96 GIELENRGWQKSA-GVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFPWQQLAQ-QGIGAW  173 (173)
T ss_dssp             EEEECCCCEEEET-TEEEECCCCHHHHHHHHHHHHHHHHHHTCCGGGEEEHHHHSTTTCCTTCTTSCHHHHHH-TTCSCC
T ss_pred             eeeeEeeccCCCc-ccccccCchHHHHHHHHHHHHHHHHHcCCChHHEeeecccCCCCCCCCCCCCCHHHHHH-cCCcCC
Confidence            9999998753211 01235689999999999999999999999999999999999999999999999999976 599999

PyMOL of d2bgxa2

>d1j3ga_ d.118.1.1 (A:) AmpD protein {Citrobacter freundii [TaxId: 546]}	Back information, alignment and structure

>d1yb0a1 d.118.1.1 (A:1-157) N-acetylmuramoyl-L-alanine amidase PlyG {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d1lbaa_ d.118.1.1 (A:) Bacteriophage T7 lysozyme (Zn amidase) {Bacteriophage T7 [TaxId: 10760]}	Back information, alignment and structure

>d2cb3a1 d.118.1.1 (A:174-344) Peptidoglycan-recognition protein-LE {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1sxra_ d.118.1.1 (A:) Peptidoglycan-recognition protein-SA (Cg11709) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1ycka1 d.118.1.1 (A:9-175) Peptidoglycan recognition protein, PGRP-S {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ohta_ d.118.1.1 (A:) Peptidoglycan recognition protein-lb (Cg14704) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2f2la1 d.118.1.1 (A:355-520) Peptidoglycan-recognition protein-LC {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2f2lx1 d.118.1.1 (X:335-499) Peptidoglycan-recognition protein-LC {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1sk4a_ d.118.1.1 (A:) Peptidoglycan recognition protein I-alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal domain {Streptomyces albus G [TaxId: 1962]}	Back information, alignment and structure

>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}	Back information, alignment and structure