Psyllid ID: psy13670

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAIGFTVDGNNMNQSMEQDPSSDVDMEKIQRSNSEEVEHETIPVPSEDNSNFSHEANLQQSPETVEPDTPDETIEVIDDMPRLQGSYRQSTPVTLSLDIIQDQLKARYARRTVQAQDRCVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPWVSMG
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccEEEEEEccEEEEEEEcccEEEEEcHHHHHHHHHHHHHHHcccccccccccEEEEccHHHHHHHHHHHHHHHHccccEEEEcccccEEEEEEEccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccccEEEEEEEEcccEEEEEccccccEEEEccHHHHHHHHHHHHHHHHHcccccccHcccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHccccccccccccHccHcccccccHHHHHHHccccccccccccEEEEEcccEEEEEEccccEEEEEccHHHHHHHHHHHHHHHHHHHccEEEEEEEcccHHHHHHHHHHHHHHHHcccEEEEccccccEEEEEEccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MKLVNEVYHQfnnhqypfIILNIemsrdsvdvnvtpdkrqiFMDHEKLLLATVKVHitdsyaigftvdgnnmnqsmeqdpssdvdmekiqrsnseevehetipvpsednsnfsheanlqqspetvepdtpdetieviddmprlqgsyrqstpvtlSLDIIQDQLKARYARRTVQAQDRCVenrfhanidpsknkeAESELNRVIKKSMFEKMKIVGQFNLGFIIVkydsdlfiidqhatdekynFETLQKTTliksqklvvpqnlhltkinqcilkdnlpvfykngfefsfdssddgnvlltslpmsknttlgrEDIEELLFMLQHtnstehcrpsRIRAMFASRACRKSVMIGRALSVGEMTGlvrnmgridqpwvsmg
Flexible Loop (DISEMBL)
MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAIGFTVDGNNMNQSMEQDPSSDVDMEKIQRSNseevehetipvpsednsnFSHEANlqqspetvepdtpDETIEVIDdmprlqgsyrqstpvtlslDIIQDQLKARYARRTvqaqdrcvenrfhanidpsknkeaesELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHtnstehcrpsrIRAMFASRACRKSVMIGRAlsvgemtglvrnmgridqpwvsmg
Low Complexity Region (SEG)
MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAIGFTVDGNNMNQSMEQDPSSDVDMEKIQRSNSEEVEHETIPVPSEDNSNFSHEANLQQSPETVEPDTPDETIEVIDDMPRLQGSYRQSTPVTLSLDIIQDQLKARYARRTVQAQDRCVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPWVSMG
Disordered region (IsUnstruct)
***VNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAIGFTVD***********************************************************************************PVTLSLDIIQDQLKARYARRTVQAQDRCVENRF******************VIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPM**NTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRI********
Disordered Region (DISOPRED)
MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAIGFTVD*****************************************************PETVEPDTPDETIE***********************************************************************SMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHT*****CRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPWVSM*
Disordered Region (DISEMBL)
MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAIGFTVDGNNMNQ****************************PVPSED*********************PDETIEVIDDMPRLQGSYRQSTPVTLSLDIIQDQLKARYARRTVQAQDRCVENRFHANIDPS********LNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPWVSMG
Disordered Region (DISPRO)
MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAIG********************************************************************************************************************************************KKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPWV***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAIGFTVDGNNMNQSMEQDPSSDVDMEKIQRSNSEEVEHETIPVPSEDNSNFSHEANLQQSPETVEPDTPDETIEVIDDMPRLQGSYRQSTPVTLSLDIIQDQLKARYARRTVQAQDRCVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPWVSMG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
P54279	859	Mismatch repair endonucle	yes	N/A	0.502	0.222	0.545	2e-58
P54278	862	Mismatch repair endonucle	yes	N/A	0.507	0.223	0.535	7e-58
P14242	873	DNA mismatch repair prote	yes	N/A	0.55	0.239	0.439	1e-44
Q54QA0	1022	Mismatch repair endonucle	yes	N/A	0.484	0.180	0.415	5e-35
P54280	794	DNA mismatch repair prote	yes	N/A	0.460	0.220	0.413	1e-34
Q8XL86	674	DNA mismatch repair prote	yes	N/A	0.923	0.520	0.232	3e-15
Q0TRD5	674	DNA mismatch repair prote	yes	N/A	0.918	0.517	0.231	8e-15
Q0STR3	674	DNA mismatch repair prote	yes	N/A	0.926	0.522	0.233	9e-15
A6TR78	637	DNA mismatch repair prote	yes	N/A	0.868	0.518	0.215	4e-14
C1FNT8	666	DNA mismatch repair prote	yes	N/A	0.881	0.503	0.245	4e-13

>sp|P54279|PMS2_MOUSE Mismatch repair endonuclease PMS2 OS=Mus musculus GN=Pms2 PE=1 SV=1

 Score =  226 bits (576), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/198 (54%), Positives = 142/198 (71%), Gaps = 7/198 (3%)

Query: 183 RFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEK 242
           +F A I P +N+ AE EL + I KSMF +M+I+GQFNLGFI+ K   DLF++DQHA DEK
Sbjct: 644 KFRAKICPGENQAAEDELRKEISKSMFAEMEILGQFNLGFIVTKLKEDLFLVDQHAADEK 703

Query: 243 YNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVL-- 300
           YNFE LQ+ T++++Q+L+ PQ L+LT +N+ +L +NL +F KNGF+F  D  +D  V   
Sbjct: 704 YNFEMLQQHTVLQAQRLITPQTLNLTAVNEAVLIENLEIFRKNGFDFVID--EDAPVTER 761

Query: 301 --LTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALS 358
             L SLP SKN T G +DI+EL+FML  +     CRPSR+R MFASRACRKSVMIG AL+
Sbjct: 762 AKLISLPTSKNWTFGPQDIDELIFMLSDSPGV-MCRPSRVRQMFASRACRKSVMIGTALN 820

Query: 359 VGEMTGLVRNMGRIDQPW 376
             EM  L+ +MG +D PW
Sbjct: 821 ASEMKKLITHMGEMDHPW 838

Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with Mlh1 to form MutL alpha. DNA repair is initiated by MutS alpha (Msh2-Msh6) or MutS beta (Msh2-Msh6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of pms2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MulL alpha (Mlh1-PMS2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages.
Mus musculus (taxid: 10090)

>sp|P54278|PMS2_HUMAN Mismatch repair endonuclease PMS2 OS=Homo sapiens GN=PMS2 PE=1 SV=2

 Score =  224 bits (572), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 105/196 (53%), Positives = 141/196 (71%), Gaps = 3/196 (1%)

Query: 183 RFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEK 242
           +F A I P +N+ AE EL + I K+MF +M+I+GQFNLGFII K + D+FI+DQHATDEK
Sbjct: 647 KFRAKICPGENQAAEDELRKEISKTMFAEMEIIGQFNLGFIITKLNEDIFIVDQHATDEK 706

Query: 243 YNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSD--DGNVL 300
           YNFE LQ+ T+++ Q+L+ PQ L+LT +N+ +L +NL +F KNGF+F  D +        
Sbjct: 707 YNFEMLQQHTVLQGQRLIAPQTLNLTAVNEAVLIENLEIFRKNGFDFVIDENAPVTERAK 766

Query: 301 LTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVG 360
           L SLP SKN T G +D++EL+FML  +     CRPSR++ MFASRACRKSVMIG AL+  
Sbjct: 767 LISLPTSKNWTFGPQDVDELIFMLSDSPGV-MCRPSRVKQMFASRACRKSVMIGTALNTS 825

Query: 361 EMTGLVRNMGRIDQPW 376
           EM  L+ +MG +D PW
Sbjct: 826 EMKKLITHMGEMDHPW 841

Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MLH1 to form MutL alpha. DNA repair is initiated by MutS alpha (MSH2-MSH6) or MutS beta (MSH2-MSH6) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of RFC and PCNA is sufficient to activate endonuclease activity of PMS2. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease EXO1 to degrade the strand containing the mismatch. DNA methylation would prevent cleavage and therefore assure that only the newly mutated DNA strand is going to be corrected. MulL alpha (MLH1-PMS2) interacts physically with the clamp loader subunits of DNA polymerase III, suggesting that it may play a role to recruit the DNA polymerase III to the site of the MMR. Also implicated in DNA damage signaling, a process which induces cell cycle arrest and can lead to apoptosis in case of major DNA damages.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P14242|PMS1_YEAST DNA mismatch repair protein PMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PMS1 PE=1 SV=3

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/223 (43%), Positives = 146/223 (65%), Gaps = 14/223 (6%)

Query: 163 QLKARYARRTVQAQDRCVENRFHANIDPSKN-KEAESELNRVIKKSMFEKMKIVGQFNLG 221
           Q+ +  ++R  +AQ+  ++N+     D  ++ ++ E  L   + K+ F+KM++VGQFNLG
Sbjct: 629 QMSSIISKRKSEAQENIIKNK-----DELEDFEQGEKYLTLTVSKNDFKKMEVVGQFNLG 683

Query: 222 FIIV--KYDS--DLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKD 277
           FIIV  K D+  DLFI+DQHA+DEKYNFETLQ  T+ KSQKL++PQ + L+ I++ ++ D
Sbjct: 684 FIIVTRKVDNKYDLFIVDQHASDEKYNFETLQAVTVFKSQKLIIPQPVELSVIDELVVLD 743

Query: 278 NLPVFYKNGFEFSFDSSDD--GNVLLTSLPMSKNTTLGREDIEELLFMLQHTNST--EHC 333
           NLPVF KNGF+   D  ++    V L SLP SK T     D  EL+ +++       ++ 
Sbjct: 744 NLPVFEKNGFKLKIDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNI 803

Query: 334 RPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
           R S+IR+MFA RACR S+MIG+ L+   MT +V N+  +D+PW
Sbjct: 804 RCSKIRSMFAMRACRSSIMIGKPLNKKTMTRVVHNLSELDKPW 846

Required for DNA mismatch repair (MMR), correcting base-base mismatches and insertion-deletion loops (IDLs) resulting from DNA replication, DNA damage or from recombination events between non-identical sequences during meiosis. Component of the MutLalpha heterodimer that forms a ternary complex with the MutS heterodimers, which initially recognize the DNA mismatches. This complex is thought to be responsible for directing the downsteam MMR events, including strand discrimination, excision, and resynthesis. Plays a major role in maintaining the genetic stability of simple sequence repeats and in the repair of heteroduplex sites present in meiotic recombination intermediates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54QA0|PMS1_DICDI Mismatch repair endonuclease pms1 OS=Dictyostelium discoideum GN=pms1 PE=3 SV=1

 Score =  149 bits (375), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 118/190 (62%), Gaps = 6/190 (3%)

Query: 194 KEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKT-- 251
           K AE EL +  KK  F++M ++GQFNLGFII K  +DLFIIDQHA DEKYNFE L K+  
Sbjct: 796 KTAEEELTKFFKKEYFKQMIVIGQFNLGFIIAKLGNDLFIIDQHAADEKYNFEILSKSVE 855

Query: 252 TLIKSQKLVVPQNLH-LTKINQCILKDNLPVFYKNGFEF--SFDSSDDGNVLLTSLPMSK 308
           + I SQ L+ P  L  LT   + I+ +N+ +F KNGF+F    D+     + L++ P+  
Sbjct: 856 SSINSQPLLKPDTLSDLTSEEELIIIENVDLFKKNGFKFIIDHDAPTRFKIKLSAFPIIH 915

Query: 309 NTTLGREDIEELLFMLQHTNSTEHC-RPSRIRAMFASRACRKSVMIGRALSVGEMTGLVR 367
             + G +DI E +FM++ ++      +  R+ ++ AS+ACRKS+M+G  L+  EM  ++ 
Sbjct: 916 GQSFGIKDIYEWIFMIKESSIPGSVNKIPRLNSLLASKACRKSIMVGTTLTHKEMKDVLN 975

Query: 368 NMGRIDQPWV 377
           N+  +D PW 
Sbjct: 976 NLSTLDNPWC 985

Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with mlh1 to form MutL alpha. DNA repair is initiated by MutS alpha (msh2-msh6) or MutS beta (msh2-msh3) binding to a dsDNA mismatch, then MutL alpha is recruited to the heteroduplex. Assembly of the MutL-MutS-heteroduplex ternary complex in presence of rfc and pcna is sufficient to activate endonuclease activity of pms1. It introduces single-strand breaks near the mismatch and thus generates new entry points for the exonuclease exo1 to degrade the strand containing the mismatch.

Dictyostelium discoideum (taxid: 44689)

>sp|P54280|PMS1_SCHPO DNA mismatch repair protein pms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pms1 PE=3 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 117/186 (62%), Gaps = 11/186 (5%)

Query: 197 ESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKS 256
           E  LN  + K+ F +M++VGQFN GFI+V + ++LFIIDQHA+DEK+N+E L+   +I S
Sbjct: 596 EDHLNLTVHKADFLRMRVVGQFNRGFIVVVHGNNLFIIDQHASDEKFNYEHLKSNLVINS 655

Query: 257 QKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDD-GN-VLLTSLPMSKNTTLGR 314
           Q LV+P+ L L    + +L D++ +  + GF  + D +   GN   L S+P SKN     
Sbjct: 656 QDLVLPKRLDLAATEETVLIDHIDLIRRKGFGVAIDLNQRVGNRCTLLSVPTSKNVIFDT 715

Query: 315 EDIEELLFMLQHTNSTEHCR----PSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMG 370
            D+ E++ +L     +EH +     SR+  M AS+ACR SVMIGRAL++ EM  +VR++ 
Sbjct: 716 SDLLEIISVL-----SEHPQIDPFSSRLERMLASKACRSSVMIGRALTISEMNTIVRHLA 770

Query: 371 RIDQPW 376
            + +PW
Sbjct: 771 ELSKPW 776

This protein is involved in the repair of mismatches in DNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8XL86|MUTL_CLOPE DNA mismatch repair protein MutL OS=Clostridium perfringens (strain 13 / Type A) GN=mutL PE=3 SV=1

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 187/404 (46%), Gaps = 53/404 (13%)

Query: 4   VNEVYHQFN-NHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATV--------K 54
           V   +  FN   ++PF +L I+   + +DVN+ P K +I    E+ +   V        +
Sbjct: 268 VENAFRSFNVTGKFPFFVLFIDTYPELIDVNIHPTKSEIKFKDERFIFKVVFDAVHSAMR 327

Query: 55  VHITDSYAI------GF-TVDGNNMNQSMEQDPSSDVDM-EKIQRSNSEEVEHETIPV-- 104
            ++ D++ +       F  +    + +S++++ S+   + E I    SE+ + E I    
Sbjct: 328 EYVKDTFTLPEEEEKKFEALKEEVIQESLDKEISTLEKLKENINYKVSEDKKKEEIYSYN 387

Query: 105 PSEDNSNFSHEANLQQSPETVEPDTPDETIEVIDDMPRLQGSYRQ-STPVTLSLD--IIQ 161
           PS+D   +  +  +    + +  +  DE+  + + +      +++ S    +S D  +I+
Sbjct: 388 PSKD---YEAKTEVNIPVDFLSKENQDESFSINNSLE--NNEFKEVSAKREISYDPILIK 442

Query: 162 DQLKARYARRTVQAQDR----CVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQ 217
           ++LK + +  T ++ +R    C +N +  +I+    +EA+           F K++++GQ
Sbjct: 443 NELKDKVSESTSESLERSDYKCNKNEYGNSIEEIIYREAK-----------FPKLRVIGQ 491

Query: 218 FNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKS---QKLVVPQNLHLTKINQCI 274
           FN  +I+ +YDS L++IDQHA  EK  FE        K    Q L++P  + L   +   
Sbjct: 492 FNKTYILAEYDSTLYLIDQHAAHEKILFEKYSSDIAKKKVEIQPLMIPLVVTLPTEDYLY 551

Query: 275 LKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQH--TNSTEH 332
             +N  +F K GF+ S     D ++ +  +P   +     E I  ++  L+   T  T  
Sbjct: 552 YDENKEIFEKAGFKIS--DFGDNSIRIEEVPYFLDKLNPTELITSMINNLKKMGTGETVE 609

Query: 333 CRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
            + ++I    AS +CR +V     LS+ EM  L+ ++  I+ P+
Sbjct: 610 VKYNKI----ASMSCRAAVKANDVLSILEMENLIEDLRYINDPF 649

This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.

Clostridium perfringens (strain 13 / Type A) (taxid: 195102)

>sp|Q0TRD5|MUTL_CLOP1 DNA mismatch repair protein MutL OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=mutL PE=3 SV=1

 Score = 81.6 bits (200), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 188/406 (46%), Gaps = 57/406 (14%)

Query: 4   VNEVYHQFN-NHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATV--------K 54
           V   +  FN   ++PF +L I+   + +DVN+ P K +I    E+ +   V        +
Sbjct: 268 VENAFRSFNVTGKFPFFVLFIDTYPELIDVNIHPTKSEIKFKDERFIFKVVFDAVHSAMR 327

Query: 55  VHITDSYAI------GF-TVDGNNMNQSMEQDPSSDVDM-EKIQRSNSEEVEHETIPV-- 104
            ++ D++ +       F  +    + +S++++ S+   + E I    SE+ + E I    
Sbjct: 328 EYVKDTFTLPEEEEKKFEALKEEVIQESLDEEISTLEKLKENINYKVSEDRKKEEIYSYN 387

Query: 105 PSEDNSNFSHEANLQQSPETVEPDTPDETIEVIDDMPR---LQGSYRQSTPVTLSLD--I 159
           PS+D   +  +  +    + +  +  +E+  + + +      +GS ++     +S D  +
Sbjct: 388 PSKD---YEAKTEVNIPVDFLSKENQEESFSINNSLENNNFKEGSAKRE----ISYDPIL 440

Query: 160 IQDQLKARYARRTVQAQDR----CVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIV 215
           I+++LK + +  T ++ +R    C +N +  +I+    +EA+           F K++++
Sbjct: 441 IKNELKDKVSESTSESLERSDYKCNKNEYGNSIEEIIYREAK-----------FPKLRVI 489

Query: 216 GQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKS---QKLVVPQNLHLTKINQ 272
           GQFN  +I+ +YDS L++IDQHA  EK  FE        K    Q L++P  + L   + 
Sbjct: 490 GQFNKTYILAEYDSTLYLIDQHAAHEKILFEKYSSDIAKKRVEIQPLMIPLVVTLPTEDY 549

Query: 273 CILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQH--TNST 330
               +N  +F K GF+ S     D ++ +  +P   +     E I  ++  L+   T  T
Sbjct: 550 LYYDENKEIFEKAGFKIS--DFGDNSIRIEEVPYFLDKLNPTELITSMINNLKKMGTGET 607

Query: 331 EHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
              + ++I    AS +CR +V     LS+ EM  L+ ++  I+ P+
Sbjct: 608 VEVKYNKI----ASMSCRAAVKANDVLSILEMENLIEDLRYINDPF 649

This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.

Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) (taxid: 195103)

>sp|Q0STR3|MUTL_CLOPS DNA mismatch repair protein MutL OS=Clostridium perfringens (strain SM101 / Type A) GN=mutL PE=3 SV=1

 Score = 81.6 bits (200), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 177/403 (43%), Gaps = 51/403 (12%)

Query: 4   VNEVYHQFN-NHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYA 62
           V   +  FN   ++PF +L I+   + +DVN+ P K +I    E+ +   V         
Sbjct: 268 VENAFRSFNVTGKFPFFVLFIDTYPELIDVNIHPTKSEIKFKDERFIFKLV--------- 318

Query: 63  IGFTVDGNNMNQSMEQDPSSDVDMEKIQRSNSEEVEHET----IPVPSEDNSNFSHEANL 118
             F    + M + ++   +   + EK   +  EEV  E+    I    +   N +++ + 
Sbjct: 319 --FDAVHSAMREYVKDTFTLPEEEEKKFEALKEEVIQESLDKEISTLEKLKENINYKVSD 376

Query: 119 QQSPETVEPDTPDETIEV-------IDDMPRLQGSYRQSTPVTLSLDIIQDQLKARYARR 171
            +  E +    P +  E        +D + +   +  +S+    SL+   +  K   A+R
Sbjct: 377 DKRKEEIYSYNPSKDYEAKTEVNIPVDFLSK--ENQEESSKFNNSLE--NNDFKEVSAKR 432

Query: 172 TV---------QAQDRCVENRF----HANIDPSKNKEAESELNRVIKKSMFEKMKIVGQF 218
            +         + +D+  EN +     ++   +KN+   S   R+ +++ F K+K++GQF
Sbjct: 433 EISYDPILIKNELKDKVSENTYDSLESSDYKCNKNEYGNSLEERIYREAKFPKLKVIGQF 492

Query: 219 NLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKS---QKLVVPQNLHLTKINQCIL 275
           N  +I+ +YDS L++IDQHA  EK  FE        K    Q L++P  + L   +    
Sbjct: 493 NKTYILAEYDSTLYLIDQHAAHEKILFEKYSSDIAKKKVEIQPLMIPLVVTLPTEDYLYY 552

Query: 276 KDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQH--TNSTEHC 333
            +N  +F K GF+ S     D ++ +  +P   +     E I  ++  L+   T  T   
Sbjct: 553 DENKEIFEKAGFKIS--DFGDNSIRIEEVPYFLDKLNPTELIISMINNLKKMGTGETVEV 610

Query: 334 RPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
           + ++I    AS +CR +V     LS+ EM  L+ ++  I+ P+
Sbjct: 611 KYNKI----ASMSCRAAVKANDVLSILEMENLIEDLRYINDPF 649

This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.

Clostridium perfringens (strain SM101 / Type A) (taxid: 289380)

>sp|A6TR78|MUTL_ALKMQ DNA mismatch repair protein MutL OS=Alkaliphilus metalliredigens (strain QYMF) GN=mutL PE=3 SV=1

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 162/367 (44%), Gaps = 37/367 (10%)

Query: 14  HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAIGFTVDGNNMN 73
           ++YP  +LNI++  +  D+NV P K +I    EK +   +  ++T   +   T+    M 
Sbjct: 279 NKYPICVLNIKIDPEDADINVHPSKTEIKFHKEKEIYHYIYNYVTQVLSESSTISEIMMI 338

Query: 74  QSMEQDPSSDVDMEKIQRSNSEEVEHETIPVPSEDNSNFSHEANLQQSPETVEPDTPDET 133
            S +        +++I  S       E+I V  +D    + E          E      +
Sbjct: 339 PSTKNQHQQHHHLKEINLSQENIQSKESIGVKQQDKVMVADEQ---------EKVKEYNS 389

Query: 134 IEVIDDMPRLQGSYRQSTPVTLSLDIIQDQLKARYARRTVQAQDRCVENRFHANIDPSKN 193
             V+D  P++     Q  P+  +L     QL       ++ + +  VE+R          
Sbjct: 390 QYVMDSRPKV-----QPPPMVNTLKTEDTQLNV----ASIISNELPVESR---------G 431

Query: 194 KEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNF----ETLQ 249
                +L +   K+  +  K+VGQ    +I+++ D  +++IDQHA  EK  +    E L+
Sbjct: 432 IRTNPQLQKNFIKTYLQNYKVVGQLFNTYIVIEKDQSVYLIDQHAAHEKLLYIQFHEELK 491

Query: 250 KTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKN 309
           K T + SQ+L+ P  L  +  +   L +N+  F   GFE   ++    ++++ ++P+  +
Sbjct: 492 KET-VASQQLLTPVVLEFSHEDYITLIENISEFIPLGFE--LEAFGQNSIIIRAVPLLLD 548

Query: 310 TTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNM 369
                +D   +  ++    + +H +P  IR     R+C++++     L + E+  L+R++
Sbjct: 549 KP---KDYNFIFELIDQVKNEKHVKPDYIREKIIQRSCKEAIKAMDILDIQEIQQLIRDL 605

Query: 370 GRIDQPW 376
            +++ P 
Sbjct: 606 EKLEPPL 612

This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.

Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826)

>sp|C1FNT8|MUTL_CLOBJ DNA mismatch repair protein MutL OS=Clostridium botulinum (strain Kyoto / Type A2) GN=mutL PE=3 SV=1

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 181/391 (46%), Gaps = 56/391 (14%)

Query: 14  HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATV--KVH--ITDSYAIGFTVDG 69
           + YPF ++ I++  + +DVNV P K ++    E+ +  T+   VH  I       FT   
Sbjct: 279 NSYPFFVIFIDIFPEYIDVNVHPTKSEVKFKDERAMFKTIFDAVHEAIKGELKESFT--- 335

Query: 70  NNMNQSMEQDPSSDVDMEKIQRSNSEEV--EHETIPVPSEDNSN-----FSHEANLQQSP 122
           N  N+        D++M   ++S +E +  E E + +P + NSN     F +  N+ + P
Sbjct: 336 NFFNKE-------DINMYDSEKSIAETIKLEKEEVQIPIDLNSNNKIDIFGN--NINKLP 386

Query: 123 ETVE--PDTPDETIEVIDDMPRLQGSYRQSTPVTLSLD-IIQDQLKARYAR--RTVQAQD 177
              E   +   +    +++      S +     T   D  +    K  Y++  + +Q  +
Sbjct: 387 NNAELLKNIGIKEKNTLENNNNFYTSKQNEICYTNKNDECLNSCNKDDYSKIEKPLQKDN 446

Query: 178 RCVE----NRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFI 233
           + ++    N  + N  P   KE +         + +  MKI+GQFN  +I+++ D +L+I
Sbjct: 447 KNLDALYLNEHNTNSSPINIKENKPN-------NFYVDMKIIGQFNNTYILIEKDKELYI 499

Query: 234 IDQHATDEKYNFETLQ---KTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFS 290
           IDQHA  EK  FE  +   +   + SQ L+ P  + L++    I ++N  +F  +G  FS
Sbjct: 500 IDQHAAHEKVLFEKFKSEIEKGYVISQILLSPVVIELSEDEFNIYEENKDIFKNSG--FS 557

Query: 291 FDSSDDGNVLLTSLPMSKNTTLGREDIEEL----LFMLQHTNSTEHCRPSRIRA-MFASR 345
            ++  +  + +  +P+     LG+ ++E+L    L+ L++  S E    S I+    A+ 
Sbjct: 558 VETFGECTINIKEVPL----ILGKPNVEDLFMDILYNLKNMKSKE---TSTIKYNAIATL 610

Query: 346 ACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
           AC+ +V     L   E+  L+ NM  ++ P+
Sbjct: 611 ACKSAVKANDNLKEEEIKKLIENMLTLNNPY 641

This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.

Clostridium botulinum (strain Kyoto / Type A2) (taxid: 536232)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
357606259	820	putative DNA mismatch repair protein pms	0.973	0.451	0.413	7e-81
443684699	469	hypothetical protein CAPTEDRAFT_218769 [	0.971	0.786	0.404	3e-75
156363567	775	predicted protein [Nematostella vectensi	0.965	0.473	0.372	3e-73
328708648	591	PREDICTED: mismatch repair endonuclease	0.563	0.362	0.577	2e-66
301604746	848	PREDICTED: mismatch repair endonuclease	0.631	0.283	0.507	2e-63
158286232	882	AGAP007126-PA [Anopheles gambiae str. PE	0.613	0.264	0.530	2e-63
383853734	692	PREDICTED: mismatch repair endonuclease	0.936	0.514	0.370	9e-63
47226069	866	unnamed protein product [Tetraodon nigro	0.660	0.289	0.496	1e-62
449283315	893	Mismatch repair endonuclease PMS2, parti	0.586	0.249	0.527	1e-62
157136917	926	DNA mismatch repair protein pms2 [Aedes	0.647	0.265	0.526	1e-62

>gi|357606259|gb|EHJ64985.1| putative DNA mismatch repair protein pms2 [Danaus plexippus]

 Score =  307 bits (786), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 190/459 (41%), Positives = 255/459 (55%), Gaps = 89/459 (19%)

Query: 1   MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLL---------- 50
           +KL+NE+Y Q+N HQYPF+ LN+ + R SVDVNVTPDKR++F+  EK +L          
Sbjct: 346 IKLINEIYRQYNPHQYPFVFLNVNIERTSVDVNVTPDKRKVFLTKEKAILDVVKCSLLKM 405

Query: 51  -----ATVKVHITDSYAI--------------GFTVDGNNMNQSMEQDPSSDVDMEKIQR 91
                 +VKV      A                F    +N + S++   S++ D  +++R
Sbjct: 406 FEDIPRSVKVEAPSIVAAVKTEPELSQPRIFQSFLKQFSNKSSSIKPSESNNPDKCELKR 465

Query: 92  SNS---------------------------------EEVEHETIPVPSEDNSNFSHEANL 118
            +S                                 E  EH  + V +E+N   ++E N+
Sbjct: 466 KSSSVLDNFIQIKKTLVTKQEDNLIEEETEEKCMLDENKEHNILNVSTEENIENANERNI 525

Query: 119 QQSPE------------------TVEPDTPDETIEVIDDMPRLQGSYRQSTPVTLSLDII 160
             S E                  ++E   P    +VI D  +L  + R    +  S++ I
Sbjct: 526 NNSLENRDTTIVEESHTIYCNTKSIETTKPKGN-KVITDKEQLGKTVRMEVTLKTSMEQI 584

Query: 161 QDQLKARYARRTVQAQ-DRCVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFN 219
           + +L   Y +    ++ DR    RF   IDP  NK+ E EL+R I+K  F+KMKI+GQFN
Sbjct: 585 K-KLSDTYKKNKDNSKPDRI---RFKTKIDPVFNKKCEEELSREIEKQSFKKMKIIGQFN 640

Query: 220 LGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNL 279
           LGFII + D DLFIIDQHATDE YNFETLQKTT + SQKLV+PQ L LT +N+ IL DNL
Sbjct: 641 LGFIITRLDDDLFIIDQHATDEIYNFETLQKTTELTSQKLVIPQQLELTGVNEQILMDNL 700

Query: 280 PVFYKNGFEFSFD--SSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSR 337
            +F KNGF F+ D  ++    V L +LPMSKN   G+EDIEELLF+L+  N +E+CRPSR
Sbjct: 701 DIFKKNGFTFAIDETAAPTKRVKLLTLPMSKNWIFGKEDIEELLFILKE-NHSEYCRPSR 759

Query: 338 IRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
           +RAMFASRACRKSVMIG ALS G+M  LV +M  ID+PW
Sbjct: 760 VRAMFASRACRKSVMIGTALSKGDMRKLVDHMAEIDKPW 798

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443684699|gb|ELT88556.1| hypothetical protein CAPTEDRAFT_218769 [Capitella teleta]

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 167/413 (40%), Positives = 236/413 (57%), Gaps = 44/413 (10%)

Query: 2   KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVK---VHIT 58
           ++VNE YH FN HQ+PF++LNI +  D+VDVNVTPDKRQ+F+ HEKLLLAT+K   V + 
Sbjct: 41  RVVNEAYHMFNRHQFPFVLLNISLVNDAVDVNVTPDKRQVFIQHEKLLLATLKASLVKLF 100

Query: 59  DSYAIGFTVDGNNMNQSMEQDPSSD------------------------------VDMEK 88
           +  +  ++++    +      P  +                              +++ K
Sbjct: 101 EQKSTSYSLNQPESSSLSSSAPEVELLHYKDFLLINQNALLRQHLLVVLLKRRVPINVPK 160

Query: 89  IQRSNSEEVEHETIPVPSEDNSNFSHE---ANLQQSPETVEPDTPDETIEVIDDMPRLQG 145
           +    +   +   +PV SE  +    +   AN  Q P   +P+T + T    D   +L+ 
Sbjct: 161 VIEKETLIAQEGELPVQSESWTALKTKDSIANNFQVP--ADPETLNITFTETDQKLKLKD 218

Query: 146 SYRQSTPVTLSLDIIQDQLKARYARRTVQAQDRCVENRFHANIDPSKNKEAESELNRVIK 205
             R+ + V   ++ ++  L++  A       + C  + F A IDP+ N+ AE EL R IK
Sbjct: 219 PRREIS-VPFDMNALKTTLQSHSAAEKASQLNPC--STFRAKIDPTDNQSAEEELRREIK 275

Query: 206 KSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNL 265
           K  F  M+I+GQFNLGF+I + + DLFIIDQHA+DEKYNFE LQK T++ SQ+LV PQ L
Sbjct: 276 KESFCAMEILGQFNLGFVIARLNQDLFIIDQHASDEKYNFEMLQKHTVLSSQRLVCPQIL 335

Query: 266 HLTKINQCILKDNLPVFYKNGFEFSFDSSDDGN--VLLTSLPMSKNTTLGREDIEELLFM 323
            LT  N+ IL DNL +F +NGF F  D        V L S P+SKN   GR+DIEEL+FM
Sbjct: 336 PLTAANEVILMDNLDIFKRNGFAFEVDEEGPPTQRVKLVSKPISKNWEFGRDDIEELVFM 395

Query: 324 LQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
           L  ++    CRP+R+R M ASRACRKS+MIG AL+  EM  L+R+M  I+ PW
Sbjct: 396 LSDSSGI-MCRPTRVRQMLASRACRKSIMIGTALNQPEMNKLLRHMSEIEHPW 447

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|156363567|ref|XP_001626114.1| predicted protein [Nematostella vectensis] gi|156212978|gb|EDO34014.1| predicted protein [Nematostella vectensis]

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 170/456 (37%), Positives = 240/456 (52%), Gaps = 89/456 (19%)

Query: 2   KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHI---- 57
           ++V+EVYH +N HQ+PF++L+I + RD+VDVNVTPDKRQ+F+  E LLLAT++  +    
Sbjct: 305 RVVSEVYHMYNRHQFPFVMLDISLKRDAVDVNVTPDKRQVFLQQETLLLATLRTSLIKMF 364

Query: 58  ---TDSY------------------------AIGFTVDGNNMNQSM-------------- 76
              T +Y                        A G +  GNN   S               
Sbjct: 365 DPGTSTYEVNQKMFTQIKLLPSPTQASHFSLASGDSPSGNNAGASTSGGFHSNSLNSLHG 424

Query: 77  ------------EQDPSSDVDM-------EKIQRSNSEEVEHETIPVPSEDNSNFSHEAN 117
                       E  PS +          E++ R N      E I +  +DN N S   +
Sbjct: 425 NNNVSGLWRKFSELSPSGEKKQSQHEEQKERVHRGNKPTKVKE-ILLLKKDNKNDSLALD 483

Query: 118 LQQSPETVEPDTPDETIEVIDDMPRLQGSY-------------RQSTPVTLSLDIIQDQL 164
                  ++ D  +E+     ++   +G++             R++  V  S++ ++  L
Sbjct: 484 SSSIFPVMQSDLKEESFHTRQNIQETRGTFSNDQEDLKVIFSRRKTVEVEFSIEKLRTCL 543

Query: 165 KARYARRTVQAQDRCVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFII 224
            +     T   + R     F A I P  N  AE EL R I++  F +M+IVGQFNLGFI+
Sbjct: 544 HSLNTSITQNGKVRI----FRAKISPENNSAAEEELTRNIQRGSFARMEIVGQFNLGFIL 599

Query: 225 VKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYK 284
            K D+DLFIIDQHA+DEKYNFE  Q+ T++++Q+L++P+ L LT +N+ IL DNL +F K
Sbjct: 600 AKLDNDLFIIDQHASDEKYNFEMQQRNTVLRNQRLIIPRKLELTAVNESILLDNLEIFRK 659

Query: 285 NGFEFSFDSSDDG----NVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRA 340
           NGFEF  D  DD      V L S+P SKN T G ED+EEL+FML        CRP+R+R 
Sbjct: 660 NGFEFQID--DDAPATQKVKLVSVPTSKNWTFGVEDVEELIFMLSDAPGIL-CRPTRVRK 716

Query: 341 MFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
           MFASRACR S+M+G ALS  +M G+VR+MG +  PW
Sbjct: 717 MFASRACRMSIMVGTALSHAQMQGIVRHMGEMKHPW 752

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|328708648|ref|XP_003243755.1| PREDICTED: mismatch repair endonuclease PMS2-like [Acyrthosiphon pisum]

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/218 (57%), Positives = 164/218 (75%), Gaps = 4/218 (1%)

Query: 162 DQLKARYAR-RTVQAQDRCVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNL 220
           +Q+K R +  R  +++ + ++ RF+A IDP KN++AE EL+R I K MF +M I+GQFNL
Sbjct: 352 EQIKQRLSNLRFRRSEKQKIKTRFYATIDPIKNQQAEVELSREISKDMFSRMSIIGQFNL 411

Query: 221 GFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLP 280
           GFII K D+DLFI+DQHATDEKYNFETLQ TT I SQKLVVPQ L LT +N+ +L +N+ 
Sbjct: 412 GFIITKLDADLFIVDQHATDEKYNFETLQNTTKITSQKLVVPQQLELTAVNEIVLMENIN 471

Query: 281 VFYKNGFEFSF--DSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRI 338
           VF  NGF+F F  D+     V LT +PMS N + G+ED++ELLFMLQ   +T  CRPSR+
Sbjct: 472 VFQMNGFDFQFQQDAEPTKKVKLTMIPMSNNWSFGKEDVDELLFMLQDAPNT-LCRPSRV 530

Query: 339 RAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
           R+MFASRACRKSVMIG+ L+ G+M  L+ +MG I+QPW
Sbjct: 531 RSMFASRACRKSVMIGKVLNFGDMRKLIDHMGDIEQPW 568

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301604746|ref|XP_002932025.1| PREDICTED: mismatch repair endonuclease PMS2-like [Xenopus (Silurana) tropicalis]

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 130/256 (50%), Positives = 170/256 (66%), Gaps = 16/256 (6%)

Query: 124 TVEPDTPDETIEVIDDMPRLQGSYRQSTPVTLSL-DIIQDQLKARYARRTVQAQDRCVEN 182
           TV+PDT D  + +           R++ P+  S+ ++ +   + +  +R  +  +R    
Sbjct: 585 TVQPDTVDAPMNI----------QRRTKPLPFSMANLTKGMERIKQQQRIKEETER--YR 632

Query: 183 RFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEK 242
           RF A I+P  N+ AE EL + I K MF KM+I+GQFNLGFII K DSDLF+IDQHATDEK
Sbjct: 633 RFRAKINPGDNQAAEDELRKEISKEMFAKMEIIGQFNLGFIITKLDSDLFMIDQHATDEK 692

Query: 243 YNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSD--DGNVL 300
           YNFE LQ+ T+++ Q+L+ PQ LHLT +N+ +L DNL +F KNGF+F FD        V 
Sbjct: 693 YNFEMLQQETVLQGQRLIAPQKLHLTAVNETVLIDNLDIFKKNGFDFIFDEEAPITERVK 752

Query: 301 LTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVG 360
           L SLP SKN T G++DIEEL+FML  +     CRPSR+R MFASRACRKSVMIG AL+V 
Sbjct: 753 LISLPTSKNWTFGQQDIEELIFMLSDSPGV-MCRPSRVRQMFASRACRKSVMIGTALNVH 811

Query: 361 EMTGLVRNMGRIDQPW 376
           EM  LV +MG I+ PW
Sbjct: 812 EMKKLVTHMGEIEHPW 827

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|158286232|ref|XP_308635.4| AGAP007126-PA [Anopheles gambiae str. PEST] gi|157020370|gb|EAA04111.4| AGAP007126-PA [Anopheles gambiae str. PEST]

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/243 (53%), Positives = 168/243 (69%), Gaps = 10/243 (4%)

Query: 138 DDMPRLQGSYRQSTPVTLSLDIIQDQLKARYARRTVQAQDR--CVENRFHANIDPSKNKE 195
           DDM      +R    +++S D+++  +K     ++ +  D+      RF + I+P+ NK 
Sbjct: 607 DDM-----RHRNQQQLSVSWDLLEQLIKREQTLQSARTADQNSLTRLRFKSKINPTSNKA 661

Query: 196 AESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIK 255
           AE+EL   I K  F KM+IVGQFNLGFIIV+   DLFI+DQHATDEKYNFE LQ+TT+++
Sbjct: 662 AENELQTEITKDDFAKMEIVGQFNLGFIIVRLGDDLFIVDQHATDEKYNFEDLQRTTVLQ 721

Query: 256 SQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSS--DDGNVLLTSLPMSKNTTLG 313
           +Q+LVVPQ L LT +N+ +L DNL VF  NGF+F  D +      V L + P S+N   G
Sbjct: 722 NQRLVVPQPLELTAVNEMVLIDNLDVFEMNGFKFEVDGAAPTTKKVRLMAKPYSRNWEFG 781

Query: 314 REDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRID 373
           +EDI+EL+FM+Q   ST  CRPSR+RAMFASRACRKSVMIGRALSV EM  L+R+MG ID
Sbjct: 782 KEDIDELIFMMQDAPSTV-CRPSRVRAMFASRACRKSVMIGRALSVREMERLIRHMGEID 840

Query: 374 QPW 376
           QPW
Sbjct: 841 QPW 843

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853734|ref|XP_003702377.1| PREDICTED: mismatch repair endonuclease PMS2-like [Megachile rotundata]

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 145/391 (37%), Positives = 230/391 (58%), Gaps = 35/391 (8%)

Query: 2   KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSY 61
           KL+N +YH++NN QYPFI LN+++ + S D+NVTPDKR IF   E+L+LAT+K  +   +
Sbjct: 300 KLINHIYHRYNNKQYPFIFLNLKLDKQSTDINVTPDKRTIFCTQERLILATLKFSLISVW 359

Query: 62  AIGFTVDGNNMNQSMEQDPSSDVDM---EKIQRSNSEEVEHETIPVPSEDNSNFSHEANL 118
                   + +  ++   P S+++      I  +N++         P++   N    ++ 
Sbjct: 360 --------DKLQANLNIKPISELNFGTKRGISPTNTDR--------PAKRFQNLYISSDT 403

Query: 119 QQSPET-VEPDTPDETIEVIDDMPR-LQGSYRQ--STPVTLSLDIIQDQLKARYARRTVQ 174
           + S E  V+ D+ ++ IE  D++   + G  ++  +T + +++  I+ +L+ +   R + 
Sbjct: 404 KHSEENNVQHDSTNKVIEYDDNVQNNIVGPVKKLDNTEMLINISTIKQKLQEK---RVIS 460

Query: 175 AQDRCVEN---RFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDL 231
            +     N   ++   ++ +KN  AE EL R + K  F KM+I+GQFNLGFII + + DL
Sbjct: 461 LKSNMAVNTKIKYKVQMECTKNSTAEDELKRELTKESFLKMEIIGQFNLGFIIARLEEDL 520

Query: 232 FIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEF-- 289
           FIIDQHATDEKY FE L   T +K+QKL+VP+ L+L+ +N+ IL ++   F  NGF F  
Sbjct: 521 FIIDQHATDEKYRFEKLNNETQLKTQKLIVPKALNLSSLNETILIEHQNTFEDNGFCFKI 580

Query: 290 SFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHT---NSTEHC-RPSRIRAMFASR 345
           + ++     V LT +P+S     G+EDIEEL+F+++     N   H  RPSR+R M ASR
Sbjct: 581 NLEAESGHRVELTGMPVSGYWQFGQEDIEELIFLIREGGVENKENHIYRPSRVRQMLASR 640

Query: 346 ACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
           ACR +VMIG AL+  EM  LV  M +++ PW
Sbjct: 641 ACRSAVMIGTALNNNEMQKLVTQMAQMENPW 671

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47226069|emb|CAG04443.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 128/258 (49%), Positives = 172/258 (66%), Gaps = 7/258 (2%)

Query: 122 PET-VEPDTPDETIEVIDDMPRLQGSYRQSTPVTLSLDIIQDQLKARYARRTVQAQDRCV 180
           PE+ V  +  D++   +D    LQ   R+  P+  SL  +  ++K    ++  +A++   
Sbjct: 592 PESSVSSNPSDKSTLAVDSPACLQ---RRMVPLQFSLRELAGKMKRLLDQQAHRAKEDLC 648

Query: 181 ENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATD 240
             RF A I P +N+ AE+EL + I+K MF+ M+I+GQFNLGFII K +SD+FIIDQHATD
Sbjct: 649 YRRFRAKISPGENQSAEAELKKEIRKDMFKDMEIIGQFNLGFIIAKLNSDVFIIDQHATD 708

Query: 241 EKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDG--N 298
           EKYNFE LQ+ T+++ QKL+ PQ LHLT +++ IL +N+ +F KNGFEF  D        
Sbjct: 709 EKYNFEMLQQHTVLQGQKLIAPQKLHLTAVSENILMENIDIFRKNGFEFQVDEDAQAMER 768

Query: 299 VLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALS 358
           V LTSLP SKN T G  DIEEL+FML  +     CRPSR+R MFASRACRKSVMIG ALS
Sbjct: 769 VKLTSLPTSKNWTFGPADIEELIFMLSDSPGV-MCRPSRVRQMFASRACRKSVMIGTALS 827

Query: 359 VGEMTGLVRNMGRIDQPW 376
           + EM  L+ +MG ++ PW
Sbjct: 828 LTEMKKLLVHMGEMEHPW 845

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449283315|gb|EMC89990.1| Mismatch repair endonuclease PMS2, partial [Columba livia]

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/235 (52%), Positives = 162/235 (68%), Gaps = 12/235 (5%)

Query: 148 RQSTPVTLSLDIIQDQLKARYARRTVQAQDRCVE----NRFHANIDPSKNKEAESELNRV 203
           +++ P+  S+ ++ +++K     + +Q Q +  E     RF A I P +NK AE EL + 
Sbjct: 644 KKTVPLEFSMKVLAEKVK-----KVIQQQQKSTEAQNYRRFKAKISPGENKVAEDELRKE 698

Query: 204 IKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQ 263
           I K MF KM+I+GQFNLGFII K +SDLFIIDQHATDEKYNFE LQ+ T+++ QKL+ PQ
Sbjct: 699 ISKEMFAKMEIIGQFNLGFIIAKLNSDLFIIDQHATDEKYNFEMLQQHTVLQGQKLIAPQ 758

Query: 264 NLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGN--VLLTSLPMSKNTTLGREDIEELL 321
           NL+LT +N+ +L +NL +F KNGF+F  + +      V L SLP SKN T G +DI+EL+
Sbjct: 759 NLNLTAVNETVLIENLEIFRKNGFDFVINENAPATQKVKLVSLPTSKNWTFGAQDIDELI 818

Query: 322 FMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
           FML        CRPSR+R MFASRACRKSVMIG ALSV EM  LV +MG I+ PW
Sbjct: 819 FMLSDCPGA-MCRPSRVRQMFASRACRKSVMIGTALSVQEMRKLVTHMGEIEHPW 872

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157136917|ref|XP_001663861.1| DNA mismatch repair protein pms2 [Aedes aegypti] gi|108869823|gb|EAT34048.1| AAEL013690-PA [Aedes aegypti]

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/262 (52%), Positives = 174/262 (66%), Gaps = 16/262 (6%)

Query: 128 DTP--DETIEVID-DMPRL-QGSYRQSTPVTLSLDIIQDQLKARYARRTVQAQDRCVEN- 182
           D+P  D   EVI+ D P   + S+R ST   L +DI   +      ++  Q+ D  V N 
Sbjct: 638 DSPIVDRKPEVIEIDQPSFKEDSFRPSTKKCLDIDISSLKTLIDEEQKLTQS-DEAVRNT 696

Query: 183 -----RFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQH 237
                +F + I+PS N+ AE EL   I K  F +M+I+GQFNLGFII + + DLFIIDQH
Sbjct: 697 SLSRLKFKSKINPSNNRAAEDELQTEISKDRFAQMEIIGQFNLGFIIARLEQDLFIIDQH 756

Query: 238 ATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDG 297
           ATDEKYNFE LQ+TT++++QKLVVPQ L LT +N+ IL DNL +F  NGF+F  D S + 
Sbjct: 757 ATDEKYNFEDLQRTTVLQNQKLVVPQQLELTAVNEMILMDNLEIFEMNGFKFEIDGSAEP 816

Query: 298 N--VLLTSLPMSKNTTLGREDIEELLFMLQHT-NSTEHCRPSRIRAMFASRACRKSVMIG 354
              V L + P SKN   G+EDI+EL+FMLQ   NS   CRPSR+RAMFASRACRKSVMIG
Sbjct: 817 TRKVKLVAKPFSKNWEFGKEDIDELIFMLQDAPNSV--CRPSRVRAMFASRACRKSVMIG 874

Query: 355 RALSVGEMTGLVRNMGRIDQPW 376
           +ALS  EM  LV +MG I+QPW
Sbjct: 875 KALSKAEMRRLVSHMGEIEQPW 896

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
ZFIN|ZDB-GENE-030131-686	851	pms2 "PMS2 postmeiotic segrega	0.757	0.338	0.470	2.8e-80
UNIPROTKB|F1NQJ2	878	Gga.22468 "Uncharacterized pro	0.581	0.251	0.554	3.4e-80
UNIPROTKB|F1RFM9	852	PMS2 "Uncharacterized protein"	0.705	0.314	0.435	1e-75
UNIPROTKB|F1PNW0	866	PMS2 "Uncharacterized protein"	0.594	0.260	0.491	2.5e-74
UNIPROTKB|F1PNU2	897	PMS2 "Uncharacterized protein"	0.594	0.251	0.491	4.5e-74
FB|FBgn0011660	899	Pms2 "Pms2" [Drosophila melano	0.697	0.294	0.483	1.1e-73
UNIPROTKB|D3ZZF0	850	Pms2 "Protein Pms2" [Rattus no	0.571	0.255	0.511	6.8e-73
MGI|MGI:104288	859	Pms2 "postmeiotic segregation	0.502	0.222	0.545	7.5e-72
RGD|1305483	542	Pms2 "PMS2 postmeiotic segrega	0.571	0.400	0.511	9.7e-72
UNIPROTKB|F1NQJ3	858	Gga.22468 "Uncharacterized pro	0.573	0.254	0.504	1.9e-70

ZFIN|ZDB-GENE-030131-686 pms2 "PMS2 postmeiotic segregation increased 2 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 623 (224.4 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
 Identities = 146/310 (47%), Positives = 188/310 (60%)

Query:    82 SDVDMEKIQRSNSEEV-EHETIP-VPSEDNSN--FSHEANLQQSPETVEPDTPDETIEVI 137
             +DV  E + +   E +  +ET+P   SE + N  FS EA   +  +  EP  P +   V 
Sbjct:   528 TDVKAEIVDKPMDENLWSYETLPETKSEQHQNRIFSPEAKRARRED--EP--PAQNCLV- 582

Query:   138 DDMPRLQGSYRQSTPV-----TLSLDIIQDQLKARY----ARRTVQAQDRCVENRFHANI 188
              D      S +   PV     T+ L   Q +L  R     A+RT   +      RF A I
Sbjct:   583 -DFKSRNASLKFDAPVNIKKKTVLLPFSQQELSKRMQRLQAQRTKSNEQEPKYRRFRAKI 641

Query:   189 DPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETL 248
             +P +N+ AE EL + I K MF++M+I+GQFNLGFII K  SDLFIIDQHATDEKYNFE L
Sbjct:   642 NPGENQTAEDELKKEISKDMFKEMEIIGQFNLGFIITKIKSDLFIIDQHATDEKYNFEML 701

Query:   249 QKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDD--GNVLLTSLPM 306
             Q+ T++K Q+L+VPQ+LHL  I++ +L +NL +F KNGF+F  D        V L SLP 
Sbjct:   702 QQNTVLKGQRLIVPQSLHLPAISETVLMENLEIFRKNGFDFLIDEDAQVMDRVKLVSLPT 761

Query:   307 SKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLV 366
             SKN T G  DIEEL+FML  +     CRPSR+R MFASRACRKSVM+G AL+  EM  LV
Sbjct:   762 SKNWTFGPNDIEELIFMLSDSPGIM-CRPSRVRQMFASRACRKSVMVGTALNTSEMKKLV 820

Query:   367 RNMGRIDQPW 376
              +MG I+QPW
Sbjct:   821 LHMGEIEQPW 830

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

UNIPROTKB|F1NQJ2 Gga.22468 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 608 (219.1 bits), Expect = 3.4e-80, Sum P(2) = 3.4e-80
 Identities = 127/229 (55%), Positives = 157/229 (68%)

Query:   154 TLSLDIIQDQLKARYARRTVQAQDRCVEN----RFHANIDPSKNKEAESELNRVIKKSMF 209
             T+ L+     L  R  R+ VQ Q +C E     RF A I P +NK AE EL + I K MF
Sbjct:   631 TVPLEFSMKALAER-VRKIVQQQQKCTETQNYRRFRAKISPGENKVAEDELRKEISKEMF 689

Query:   210 EKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTK 269
              KM+I+GQFNLGFII K +SDLFIIDQHATDEKYNFE LQ+ T+++ QKL+ PQNL+LT 
Sbjct:   690 AKMEIIGQFNLGFIIAKLNSDLFIIDQHATDEKYNFEMLQQHTVLQGQKLIAPQNLNLTA 749

Query:   270 INQCILKDNLPVFYKNGFEFSFDSSDD--GNVLLTSLPMSKNTTLGREDIEELLFMLQHT 327
             +N+ +L +NL +F KNGF+F  + +      V L SLP SKN T G +DI+EL+FML   
Sbjct:   750 VNETVLIENLEIFRKNGFDFVINENAPVTQRVKLISLPTSKNWTFGPQDIDELIFMLSDC 809

Query:   328 NSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
                  CRPSR+R MFASRACRKSVMIG AL+V EM  LV +MG I+ PW
Sbjct:   810 PGVM-CRPSRVRQMFASRACRKSVMIGTALNVQEMKKLVTHMGEIEHPW 857

GO:0005524 "ATP binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=IEA

GO:0032138 "single base insertion or deletion binding" evidence=IEA

GO:0032389 "MutLalpha complex" evidence=IEA

GO:0032407 "MutSalpha complex binding" evidence=IEA

UNIPROTKB|F1RFM9 PMS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 576 (207.8 bits), Expect = 1.0e-75, Sum P(2) = 1.0e-75
 Identities = 122/280 (43%), Positives = 174/280 (62%)

Query:   105 PSEDNSNFSHEANLQQSPETVEPDTPDETIEVID----DMPRLQGSYRQSTPVTLSLDII 160
             P   N++  +    ++    + PD P E +        ++       ++  P+  S+  +
Sbjct:   556 PQPPNASSPNPKRFKKEGVPLNPDVPPEPVATQSVAAAEVDVAVDIEKKIVPLDFSMRSL 615

Query:   161 QDQLKARYARRTVQAQDRCVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNL 220
               ++K +  R+  Q +      +F A I P +N+ AE EL + I K MF +M+I+GQFNL
Sbjct:   616 AKRIK-QLCRQEQQREGEQNYRKFRAKICPGENQAAEDELRKEISKEMFAEMEIIGQFNL 674

Query:   221 GFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLP 280
             GFII K ++D+FI+DQHATDEKYNFE LQ+ T+++ Q+L+VPQ L+LT +N+ +L +NL 
Sbjct:   675 GFIITKLNADIFIVDQHATDEKYNFEMLQQHTVLQGQRLIVPQTLNLTAVNEAVLIENLD 734

Query:   281 VFYKNGFEFSFDSSDDGNVL----LTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPS 336
             +F KNGF+F  D  +D  V     L SLP SKN T G +DI+EL+FML  +     CRPS
Sbjct:   735 IFRKNGFDFVID--EDAPVTERAKLISLPTSKNWTFGPQDIDELIFMLSDSPGVM-CRPS 791

Query:   337 RIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
             R+R MFASRACRKSVMIG AL+  EM  LV +MG +D PW
Sbjct:   792 RVRQMFASRACRKSVMIGTALNTSEMRRLVSHMGEMDHPW 831

GO:0032407 "MutSalpha complex binding" evidence=IEA

GO:0032389 "MutLalpha complex" evidence=IEA

GO:0032138 "single base insertion or deletion binding" evidence=IEA

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1PNW0 PMS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 569 (205.4 bits), Expect = 2.5e-74, Sum P(2) = 2.5e-74
 Identities = 114/232 (49%), Positives = 155/232 (66%)

Query:   148 RQSTPVTLSLDIIQDQLKA-RYARRTVQAQDRCVENRFHANIDPSKNKEAESELNRVIKK 206
             ++  P+  S+  +  Q+K  R   +  + +  C   +F A I P +N+ AE EL + I K
Sbjct:   617 KKVVPLAFSMRSLAKQIKQLRQQGQQREGEQNC--RKFRAKICPGENQAAEDELRKEISK 674

Query:   207 SMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLH 266
             +MF +M+I+GQFNLGFII K  +D+FI+DQHATDEKYNFE LQ+ T+++ Q+L+ PQ L+
Sbjct:   675 TMFAEMEIIGQFNLGFIITKLKADIFIVDQHATDEKYNFEMLQQHTVLQGQRLIAPQTLN 734

Query:   267 LTKINQCILKDNLPVFYKNGFEFSFDSSDD--GNVLLTSLPMSKNTTLGREDIEELLFML 324
             LT +N+ IL +NL +F KNGF+F  D          L SLP SKN T G +DI+EL+FML
Sbjct:   735 LTAVNEAILIENLEIFRKNGFDFVIDEGAPVTERAKLISLPTSKNWTFGPQDIDELIFML 794

Query:   325 QHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
               +     CRPSR+R MFASRACRKSVMIG AL+  EM  L+ +MG +D PW
Sbjct:   795 SDSPGVM-CRPSRVRQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPW 845

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1PNU2 PMS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 569 (205.4 bits), Expect = 4.5e-74, Sum P(2) = 4.5e-74
 Identities = 114/232 (49%), Positives = 155/232 (66%)

Query:   148 RQSTPVTLSLDIIQDQLKA-RYARRTVQAQDRCVENRFHANIDPSKNKEAESELNRVIKK 206
             ++  P+  S+  +  Q+K  R   +  + +  C   +F A I P +N+ AE EL + I K
Sbjct:   648 KKVVPLAFSMRSLAKQIKQLRQQGQQREGEQNC--RKFRAKICPGENQAAEDELRKEISK 705

Query:   207 SMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLH 266
             +MF +M+I+GQFNLGFII K  +D+FI+DQHATDEKYNFE LQ+ T+++ Q+L+ PQ L+
Sbjct:   706 TMFAEMEIIGQFNLGFIITKLKADIFIVDQHATDEKYNFEMLQQHTVLQGQRLIAPQTLN 765

Query:   267 LTKINQCILKDNLPVFYKNGFEFSFDSSDD--GNVLLTSLPMSKNTTLGREDIEELLFML 324
             LT +N+ IL +NL +F KNGF+F  D          L SLP SKN T G +DI+EL+FML
Sbjct:   766 LTAVNEAILIENLEIFRKNGFDFVIDEGAPVTERAKLISLPTSKNWTFGPQDIDELIFML 825

Query:   325 QHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
               +     CRPSR+R MFASRACRKSVMIG AL+  EM  L+ +MG +D PW
Sbjct:   826 SDSPGVM-CRPSRVRQMFASRACRKSVMIGTALNTSEMKKLITHMGEMDHPW 876

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

FB|FBgn0011660 Pms2 "Pms2" [Drosophila melanogaster (taxid:7227)]

 Score = 584 (210.6 bits), Expect = 1.1e-73, Sum P(2) = 1.1e-73
 Identities = 131/271 (48%), Positives = 169/271 (62%)

Query:   110 SNFSHEANLQQSPETVEPDTPDETIEVIDDMPRLQGSYRQSTPVTLSLDIIQDQLKAR-Y 168
             +  S E ++  S E    + P   IE  ++M     S   S  +T SL+ I   LKA   
Sbjct:   600 TQLSEETDIA-SDEDDHIELPTR-IEFDEEMEEGLPSNFSSGEITTSLEEIASSLKAHEQ 657

Query:   169 ARRTVQAQDRCVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYD 228
              +R  + + +    RF   I+P++N  AE+EL R I K  F +M+I+GQFNLGFIIVK +
Sbjct:   658 QQRDRRTRTKLQRLRFKTEINPNQNTSAEAELQREIDKEDFARMEIIGQFNLGFIIVKLE 717

Query:   229 SDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFE 288
              DLFI+DQHATDEKYNFETLQ+TT ++ Q+L VPQNL LT +N+ +L +++ VF KNGF+
Sbjct:   718 DDLFIVDQHATDEKYNFETLQRTTQLEYQRLAVPQNLELTAVNEMVLLNHIDVFEKNGFK 777

Query:   289 FSFDSSDDGN--VLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRA 346
             F  D        V L   P SK    G+EDI+EL+FMLQ       CRPSR+RAMFASRA
Sbjct:   778 FEVDHEAPATKKVRLLGKPHSKRWEFGKEDIDELIFMLQDAPEGTICRPSRVRAMFASRA 837

Query:   347 CRKSVMIGRALSVGE-MTGLVRNMGRIDQPW 376
             CRKSVMIG ALS    M  L+  MG I+QPW
Sbjct:   838 CRKSVMIGTALSRNTTMRRLITQMGEIEQPW 868

GO:0006298 "mismatch repair" evidence=ISS;IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0032389 "MutLalpha complex" evidence=IBA

GO:0032300 "mismatch repair complex" evidence=IBA

GO:0003697 "single-stranded DNA binding" evidence=IBA

GO:0016887 "ATPase activity" evidence=IBA

GO:0032407 "MutSalpha complex binding" evidence=IBA

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

UNIPROTKB|D3ZZF0 Pms2 "Protein Pms2" [Rattus norvegicus (taxid:10116)]

 Score = 561 (202.5 bits), Expect = 6.8e-73, Sum P(2) = 6.8e-73
 Identities = 115/225 (51%), Positives = 153/225 (68%)

Query:   156 SLDIIQDQLKARYARRTVQAQDRCVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIV 215
             SL  +  Q+K +      Q++      +F A I P +N+ AE EL R I+KSMF +M+I+
Sbjct:   609 SLSSLAKQMK-QLQHLKQQSKSEHNYRKFRAKICPGENQAAEDELRREIRKSMFAEMEIL 667

Query:   216 GQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCIL 275
             GQFNLGFI+ K   DLF++DQHA DEKYNFE LQ+ T++++Q+L+ PQ L+LT +N+ +L
Sbjct:   668 GQFNLGFIVTKLKEDLFLVDQHAADEKYNFEMLQQHTVLQAQRLITPQTLNLTAVNEAVL 727

Query:   276 KDNLPVFYKNGFEFSFDSSDDGNVL----LTSLPMSKNTTLGREDIEELLFMLQHTNSTE 331
              +NL +F KNGF+F  D  +D  V     L SLP SKN T G +DI+EL+FML  +    
Sbjct:   728 IENLEIFRKNGFDFIID--EDAPVTERAKLISLPTSKNWTFGPQDIDELIFMLSDSPGVM 785

Query:   332 HCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
              CRPSR+R MFASRACRKSVMIG ALS  EM  L+ +MG +D PW
Sbjct:   786 -CRPSRVRQMFASRACRKSVMIGTALSASEMKKLISHMGEMDHPW 829

GO:0005524 "ATP binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0030983 "mismatched DNA binding" evidence=IEA

MGI|MGI:104288 Pms2 "postmeiotic segregation increased 2 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 551 (199.0 bits), Expect = 7.5e-72, Sum P(2) = 7.5e-72
 Identities = 108/198 (54%), Positives = 142/198 (71%)

Query:   183 RFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEK 242
             +F A I P +N+ AE EL + I KSMF +M+I+GQFNLGFI+ K   DLF++DQHA DEK
Sbjct:   644 KFRAKICPGENQAAEDELRKEISKSMFAEMEILGQFNLGFIVTKLKEDLFLVDQHAADEK 703

Query:   243 YNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVL-- 300
             YNFE LQ+ T++++Q+L+ PQ L+LT +N+ +L +NL +F KNGF+F  D  +D  V   
Sbjct:   704 YNFEMLQQHTVLQAQRLITPQTLNLTAVNEAVLIENLEIFRKNGFDFVID--EDAPVTER 761

Query:   301 --LTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALS 358
               L SLP SKN T G +DI+EL+FML  +     CRPSR+R MFASRACRKSVMIG AL+
Sbjct:   762 AKLISLPTSKNWTFGPQDIDELIFMLSDSPGVM-CRPSRVRQMFASRACRKSVMIGTALN 820

Query:   359 VGEMTGLVRNMGRIDQPW 376
               EM  L+ +MG +D PW
Sbjct:   821 ASEMKKLITHMGEMDHPW 838

GO:0003677 "DNA binding" evidence=ISO

GO:0003697 "single-stranded DNA binding" evidence=IBA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IMP

GO:0006298 "mismatch repair" evidence=ISO;IGI;IMP;TAS

GO:0006974 "response to DNA damage stimulus" evidence=IGI;IMP

GO:0007126 "meiosis" evidence=TAS

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IMP

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IBA

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0032138 "single base insertion or deletion binding" evidence=ISO

GO:0032389 "MutLalpha complex" evidence=IDA

GO:0032407 "MutSalpha complex binding" evidence=IBA

RGD|1305483 Pms2 "PMS2 postmeiotic segregation increased 2 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 561 (202.5 bits), Expect = 9.7e-72, Sum P(2) = 9.7e-72
 Identities = 115/225 (51%), Positives = 153/225 (68%)

Query:   156 SLDIIQDQLKARYARRTVQAQDRCVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIV 215
             SL  +  Q+K +      Q++      +F A I P +N+ AE EL R I+KSMF +M+I+
Sbjct:   301 SLSSLAKQMK-QLQHLKQQSKSEHNYRKFRAKICPGENQAAEDELRREIRKSMFAEMEIL 359

Query:   216 GQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCIL 275
             GQFNLGFI+ K   DLF++DQHA DEKYNFE LQ+ T++++Q+L+ PQ L+LT +N+ +L
Sbjct:   360 GQFNLGFIVTKLKEDLFLVDQHAADEKYNFEMLQQHTVLQAQRLITPQTLNLTAVNEAVL 419

Query:   276 KDNLPVFYKNGFEFSFDSSDDGNVL----LTSLPMSKNTTLGREDIEELLFMLQHTNSTE 331
              +NL +F KNGF+F  D  +D  V     L SLP SKN T G +DI+EL+FML  +    
Sbjct:   420 IENLEIFRKNGFDFIID--EDAPVTERAKLISLPTSKNWTFGPQDIDELIFMLSDSPGVM 477

Query:   332 HCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
              CRPSR+R MFASRACRKSVMIG ALS  EM  L+ +MG +D PW
Sbjct:   478 -CRPSRVRQMFASRACRKSVMIGTALSASEMKKLISHMGEMDHPW 521

GO:0003674 "molecular_function" evidence=ND

GO:0003697 "single-stranded DNA binding" evidence=IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006298 "mismatch repair" evidence=IBA

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IBA

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=IEA

GO:0016887 "ATPase activity" evidence=IBA

GO:0032138 "single base insertion or deletion binding" evidence=IEA

GO:0032300 "mismatch repair complex" evidence=IBA

GO:0032389 "MutLalpha complex" evidence=IBA

GO:0032407 "MutSalpha complex binding" evidence=IBA

GO:0042493 "response to drug" evidence=IEP

UNIPROTKB|F1NQJ3 Gga.22468 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 524 (189.5 bits), Expect = 1.9e-70, Sum P(2) = 1.9e-70
 Identities = 116/230 (50%), Positives = 147/230 (63%)

Query:   154 TLSLDIIQDQLKARYARRTVQAQDRCVEN----RFHANIDPSKNKEAESELNRVIKKSMF 209
             T+ L+     L  R  R+ VQ Q +C E     RF A I P +NK AE EL + I K MF
Sbjct:   615 TVPLEFSMKALAER-VRKIVQQQQKCTETQNYRRFRAKISPGENKVAEDELRKEISKEMF 673

Query:   210 EKMKIVGQFNLGFIIVKYD-SDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLT 268
              KM+    + + F +      DLFIIDQHATDEKYNFE LQ+ T+++ QKL+ PQNL+LT
Sbjct:   674 AKME---HWPVQFRVYNSQVEDLFIIDQHATDEKYNFEMLQQHTVLQGQKLIAPQNLNLT 730

Query:   269 KINQCILKDNLPVFYKNGFEFSFDSSDD--GNVLLTSLPMSKNTTLGREDIEELLFMLQH 326
              +N+ +L +NL +F KNGF+F  + +      V L SLP SKN T G +DI+EL+FML  
Sbjct:   731 AVNETVLIENLEIFRKNGFDFVINENAPVTQRVKLISLPTSKNWTFGPQDIDELIFMLSD 790

Query:   327 TNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
                   CRPSR+R MFASRACRKSVMIG AL+V EM  LV +MG I+ PW
Sbjct:   791 CPGVM-CRPSRVRQMFASRACRKSVMIGTALNVQEMKKLVTHMGEIEHPW 839

GO:0005524 "ATP binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0030983 "mismatched DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P54278	PMS2_HUMAN	3, ., 1, ., -, ., -	0.5357	0.5078	0.2238	yes	N/A
P54279	PMS2_MOUSE	No assigned EC number	0.5454	0.5026	0.2223	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	380
COG0323	638	COG0323, MutL, DNA mismatch repair enzyme (predict	1e-44
smart00853	140	smart00853, MutL_C, MutL C terminal dimerisation d	5e-34
pfam08676	144	pfam08676, MutL_C, MutL C terminal dimerisation do	1e-23
cd03484	142	cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_	6e-22
PRK00095	617	PRK00095, mutL, DNA mismatch repair protein; Revie	4e-19
cd00782	122	cd00782, MutL_Trans, MutL_Trans: transducer domain	2e-14
pfam01119	119	pfam01119, DNA_mis_repair, DNA mismatch repair pro	3e-10
TIGR00585	312	TIGR00585, mutl, DNA mismatch repair protein MutL	4e-07
cd00329	107	cd00329, TopoII_MutL_Trans, MutL_Trans: transducer	6e-06
cd03485	132	cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_	9e-05
cd03483	127	cd03483, MutL_Trans_MLH1, MutL_Trans_MLH1: transdu	8e-04

>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]

 Score =  162 bits (412), Expect = 1e-44
 Identities = 81/378 (21%), Positives = 151/378 (39%), Gaps = 36/378 (9%)

Query: 2   KLVNEVYHQFN-NHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDS 60
             + E Y  +    +YP  +L +E+  + VDVNV P K+++    E+L+   +   I ++
Sbjct: 270 HALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKKEVRFSDERLVHDLIYEAIKEA 329

Query: 61  YAIGFTVDGNNMNQSMEQDPSSDVDMEKIQRSNSEEVEHETIPVPSEDNSNFSHEANLQQ 120
            A      G     S+E             +S S+ +     P P  ++     +     
Sbjct: 330 LAQ----QGLIPPASVEA-----------PKSASQPLPAFQEPSPLPESRIQKSKVAKSG 374

Query: 121 SPETVEPDTPDETIEVIDDMPRLQGSYRQSTPVTLSLDIIQDQLKARYARRTVQAQDRCV 180
           S ++  P   +              S    +   LS   I  +          + +DR  
Sbjct: 375 SSKSDAPSIAEPA-------SGASPSPASPSIRPLSK-NILPESSPGSL----KNEDRSY 422

Query: 181 ENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATD 240
           ++            + E    + I + +F   + +GQ +  +I+ +++  L ++DQHA  
Sbjct: 423 DDLL--EEPAESEDKQEEAEQKAISEDVFPLGEAIGQVHGTYILAEHEDGLVLVDQHAAH 480

Query: 241 EKYNFETLQKT--TLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGN 298
           E+  +E L+     + + Q L++P  L L+     +L+++     K GFE    S  + +
Sbjct: 481 ERILYEKLKNELGNVGELQPLLIPIRLELSPEEADVLEEHKEELEKLGFEIE--SFGENS 538

Query: 299 VLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALS 358
           V + S+P        +E I ELL  L      +      +  + A+ ACR +V  GR LS
Sbjct: 539 VAVRSVPAMLGKAEVQELIRELLDDLLEGKLKDL--KELLEELAATMACRSAVKAGRELS 596

Query: 359 VGEMTGLVRNMGRIDQPW 376
             EM  L+R++     PW
Sbjct: 597 AEEMNALLRDLEACPNPW 614

Length = 638

>gnl|CDD|214857 smart00853, MutL_C, MutL C terminal dimerisation domain

 Score =  122 bits (308), Expect = 5e-34
 Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 5/144 (3%)

Query: 214 IVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQ-KTTLIKSQKLVVPQNLHLTKINQ 272
            +GQ    +I+ + +  L+++DQHA  E+  +E L  +   ++SQ L++P  L L+    
Sbjct: 1   ALGQVAGTYILAEREDGLYLLDQHAAHERILYEQLLKQAGGLESQPLLIPVRLELSPQEA 60

Query: 273 CILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEH 332
            +L+++L +  + GFE         +++L S+P        ++ I ELL +L        
Sbjct: 61  ALLEEHLELLRQLGFELEIFG--PQSLILRSVPALLRQQNLQKLIPELLDLLSDEEENAR 118

Query: 333 CRPSRIRAMFASRACRKSVMIGRA 356
             PSR+ A+ AS ACR ++  G A
Sbjct: 119 --PSRLEALLASLACRSAIRAGDA 140

MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation. Length = 140

>gnl|CDD|219965 pfam08676, MutL_C, MutL C terminal dimerisation domain

 Score = 95.0 bits (237), Expect = 1e-23
 Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 8/147 (5%)

Query: 213 KIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTT--LIKSQKLVVPQNLHLTKI 270
           K +GQ +  +I+ + +  L+++DQHA  E+  +E L+       +SQ L++P  L L+  
Sbjct: 4   KALGQVHGTYILAENEDGLYLVDQHAAHERILYEKLKSKLKEGGQSQPLLIPLTLELSPE 63

Query: 271 NQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNST 330
              +L+++  +  + GFE         ++++ S+P         E I ELL  L     +
Sbjct: 64  EAALLEEHKELLARLGFELE--EFGPNSLIVRSVPALLRQQNLEELIRELLDELAEKGES 121

Query: 331 EHCRPSRIRAMFASRACRKSVMIGRAL 357
           E      +  + A+ AC  ++  GR L
Sbjct: 122 E----ELLEELLATMACHSAIRAGRRL 144

MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation. Length = 144

>gnl|CDD|239566 cd03484, MutL_Trans_hPMS_2_like, MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2)

 Score = 90.4 bits (225), Expect = 6e-22
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 2   KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSY 61
           KL+NEVY  FN+ QYPF ILNI +     DVNVTPDKR + +  E  L+ T+K  +++ +
Sbjct: 82  KLINEVYKSFNSRQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRLIDTLKTSLSELF 141

Query: 62  A 62
            
Sbjct: 142 E 142

hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome. Length = 142

>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed

 Score = 88.7 bits (221), Expect = 4e-19
 Identities = 68/383 (17%), Positives = 142/383 (37%), Gaps = 60/383 (15%)

Query: 2   KLVN----EVYHQF-NNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVH 56
           KL+N    + YH      +YP  +L +E+    VDVNV P K ++    E+L+   +   
Sbjct: 261 KLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVRFRDERLVHDLIVQA 320

Query: 57  ITDSYAIGFTVDGNNMNQSMEQDPSSDVDMEKIQRSNSEEVEHETIPVPSEDNSNFSHEA 116
           I ++ A             +    +    + +        ++   +          S  +
Sbjct: 321 IQEALAQ----------SGLIPAAAGANQVLEPAEPEPLPLQQTPLYASGSSPPASSPSS 370

Query: 117 NLQQSPETVEPDTPDETIEVIDDMPRLQGSYRQSTPVTLSLDIIQDQLKARYARRTVQAQ 176
              +  E  + ++  E   +  +  + + +   S     +                    
Sbjct: 371 APPEQSEESQEESSAEKNPLQPNASQSEAAAAASAEAAAA-------------------- 410

Query: 177 DRCVENRFHANIDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQ 236
                    A     +  EA  E +       F     +GQ +  +I+ + +  L+++DQ
Sbjct: 411 ---------APAAAPEPAEAAEEADS------FPLGYALGQLHGTYILAENEDGLYLVDQ 455

Query: 237 HATDEKYNFETLQ---KTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDS 293
           HA  E+  +E L+       + SQ L++P  L L++     L+++  +  + G E     
Sbjct: 456 HAAHERLLYEQLKDKLAEVGLASQPLLIPLVLELSEDEADRLEEHKELLARLGLELE--P 513

Query: 294 SDDGNVLLTSLPMSKNTTLGREDIEELLF-MLQHTNSTEHCRPSRIRAMFASRACRKSVM 352
               +  +  +P      LG++++EEL+  +L            + R + A+ AC  ++ 
Sbjct: 514 FGPNSFAVREVP----ALLGQQELEELIRDLLDELAEEGDSDTLKERELLATMACHGAIR 569

Query: 353 IGRALSVGEMTGLVRNMGRIDQP 375
            GR L++ EM  L+R +   + P
Sbjct: 570 AGRRLTLEEMNALLRQLEATENP 592

Length = 617

>gnl|CDD|238405 cd00782, MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 1   MKLVNEVYHQFNN-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITD 59
            K +NE Y  +    +YP  +LN+E+  + VDVNV P KR++    E+ +L  ++  +  
Sbjct: 61  SKAINEAYRSYLPKGRYPVFVLNLELPPELVDVNVHPTKREVRFSDEEEVLELIREALRS 120

Query: 60  SY 61
           + 
Sbjct: 121 AL 122

This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome. Mutation in hMLH1 accounts for a large fraction of HNPCC families. There is no convincing evidence to support hPMS1 having a role in HNPCC predisposition. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Length = 122

>gnl|CDD|201604 pfam01119, DNA_mis_repair, DNA mismatch repair protein, C-terminal domain

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 1   MKLVNEVYHQF-NNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITD 59
              + E Y       +YP  +L +E+  + VDVNV P KR++    E+ +   ++  + +
Sbjct: 57  SHAIREAYRDLLPKGRYPVAVLFLEIDPELVDVNVHPAKREVRFRDEREVHDFIEEAVRE 116

Query: 60  SYA 62
           + A
Sbjct: 117 ALA 119

This family represents the C-terminal domain of the mutL/hexB/PMS1 family. This domain has a ribosomal S5 domain 2-like fold. Length = 119

>gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 2   KLVNEVYHQFN-NHQYPFIILNIEMSRDSVDVNVTPDKRQIF 42
           K + EVYH++    QYP  +LN+E+  + VDVNV PDK+++ 
Sbjct: 271 KAIREVYHEYLPKGQYPVFVLNLEIDPELVDVNVHPDKKEVR 312

All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 312

>gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 2   KLVNEVYHQFNN----HQYPFIILNIEMSRDSVDVNVTPDKRQIF 42
           K V E Y +  N     +YP  +L++++    VDVNV P K ++ 
Sbjct: 63  KAVREAYTRALNGDDVRRYPVAVLSLKIPPSLVDVNVHPTKEEVR 107

This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch repair (MMR). Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families. Length = 107

>gnl|CDD|239567 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 1   MKLVNEVYHQ----FNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLL 50
            KL+ + Y       +  +YP   LNI      VDVN+ PDK  + + +++ +L
Sbjct: 67  GKLLRQYYSSAYRKSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVL 120

hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition. Length = 132

>gnl|CDD|239565 cd03483, MutL_Trans_MLH1, MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1)

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 2   KLVNEVYHQF-NNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITD 59
           + +  VY  +     +PF+ L++E+  ++VDVNV P KR++   +E+ ++  ++  + D
Sbjct: 66  RAIENVYANYLPKGAHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVED 124

This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
PRK00095	617	mutL DNA mismatch repair protein; Reviewed	100.0
COG0323	638	MutL DNA mismatch repair enzyme (predicted ATPase)	100.0
KOG1978|consensus	672		100.0
PF08676	144	MutL_C: MutL C terminal dimerisation domain; Inter	100.0
smart00853	136	MutL_C MutL C terminal dimerisation domain. MutL a	99.94
KOG1977|consensus	1142		99.83
cd03483	127	MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain	99.76
cd03482	123	MutL_Trans_MutL MutL_Trans_MutL: transducer domain	99.71
cd03485	132	MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: tran	99.69
PF01119	119	DNA_mis_repair: DNA mismatch repair protein, C-ter	99.67
cd03484	142	MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: tran	99.65
cd00782	122	MutL_Trans MutL_Trans: transducer domain, having a	99.6
cd03486	141	MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain	99.6
KOG1979|consensus	694		99.54
cd00329	107	TopoII_MutL_Trans MutL_Trans: transducer domain, h	98.72
PRK14867	659	DNA topoisomerase VI subunit B; Provisional	87.12
KOG1977|consensus	1142		81.14

>PRK00095 mutL DNA mismatch repair protein; Reviewed

Probab=100.00  E-value=1.3e-49  Score=417.20  Aligned_cols=325  Identities=19%  Similarity=0.278  Sum_probs=210.5

Q ss_pred             cHHHHHHHhhCC-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhccCcccCCCcccccccCCC
Q psy13670          2 KLVNEVYHQFNN-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAIGFTVDGNNMNQSMEQDP   80 (380)
Q Consensus         2 ~~v~~~y~~~~~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (380)
                      ++|+++|+++++ ++||+|||+|++||+.|||||||+|++|+|.+|+.|+++|..+|+.+|..   .. . . +...  .
T Consensus       265 ~ai~~~y~~~~~~~~~P~~~l~i~~~~~~~DvNvhP~K~ev~f~~e~~i~~~i~~~i~~~l~~---~~-~-~-~~~~--~  336 (617)
T PRK00095        265 HAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVRFRDERLVHDLIVQAIQEALAQ---SG-L-I-PAAA--G  336 (617)
T ss_pred             HHHHHHHHHhccCCCCcEEEEEEEeChHhcccccCCCcCEEEeCCHHHHHHHHHHHHHHHHhc---cC-C-C-cccc--c
Confidence            689999999998 99999999999999999999999999999999999999999999999975   11 1 0 0000  0


Q ss_pred             CCccchhhhccCCCccccccCCCCCCCCCCCccccccccCCCCCcCCCCCCCcceecCCCCCcccccCCCCCcccchhhh
Q psy13670         81 SSDVDMEKIQRSNSEEVEHETIPVPSEDNSNFSHEANLQQSPETVEPDTPDETIEVIDDMPRLQGSYRQSTPVTLSLDII  160 (380)
Q Consensus        81 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (380)
                         ......+        ..+.+..... ..+.+.      .       .   . ....+...........+....    
T Consensus       337 ---~~~~~~~--------~~~~~~~~~~-~~~~~~------~-------~---~-~~~~~~~~~~~~~~~~~~~~~----  383 (617)
T PRK00095        337 ---ANQVLEP--------AEPEPLPLQQ-TPLYAS------G-------S---S-PPASSPSSAPPEQSEESQEES----  383 (617)
T ss_pred             ---ccccccc--------cccccccccc-cccCcc------c-------c---c-ccccccccccccccccccccc----
Confidence               0000000        0000000000 000000      0       0   0 000000000000000000000    


Q ss_pred             Hhhhhhhhhhhhh---cccchhhhhhhhcccCCCcchhhH-HHhhhhccccccccceEEEEEeCcEEEEEeCCeEEEEeh
Q psy13670        161 QDQLKARYARRTV---QAQDRCVENRFHANIDPSKNKEAE-SELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQ  236 (380)
Q Consensus       161 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ae-~~~~~~~~~~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQ  236 (380)
                          . .......   .+.. ..+...  ...+....... ...........++.+++|||++++|||++.+++||||||
T Consensus       384 ----~-~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vigQv~~~YIl~e~~~~L~iIDQ  455 (617)
T PRK00095        384 ----S-AEKNPLQPNASQSE-AAAAAS--AEAAAAAPAAAPEPAEAAEEADSFPLGYALGQLHGTYILAENEDGLYLVDQ  455 (617)
T ss_pred             ----c-cccccccccccccc-cccccc--cccccccccccccccccccccccCcCceEeEEEcCEEEEEEeCCcEEEEEH
Confidence                0 0000000   0000 000000  00000000000 000001112344567899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhc---CCCccccccceeeecCHHHHHHHHHhHHHHHhCCeEEEEecCCCCeEEEEecCCCCCccCC
Q psy13670        237 HATDEKYNFETLQKTT---LIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLG  313 (380)
Q Consensus       237 HAAhERilyE~l~~~~---~~~sQ~LL~P~~l~l~~~e~~~l~~~~~~L~~lGf~~~~~~~g~~~~~I~~vP~~l~~~~~  313 (380)
                      |||||||+||+|+++.   ...+|+||+|+.++|++.+..+++++.+.|++|||+++  .+|++++.|++||.++.....
T Consensus       456 HAAhERI~yE~l~~~~~~~~~~~Q~LL~P~~l~Ls~~e~~~l~~~~~~L~~lGf~~e--~fg~~si~I~~vP~~l~~~~~  533 (617)
T PRK00095        456 HAAHERLLYEQLKDKLAEVGLASQPLLIPLVLELSEDEADRLEEHKELLARLGLELE--PFGPNSFAVREVPALLGQQEL  533 (617)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccccccCeEEeeCHHHHHHHHHHHHHHHhCCcEEE--EcCCCEEEEEecChhhcccCH
Confidence            9999999999999863   46789999999999999999999999999999999998  568899999999998764433


Q ss_pred             hhhHHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHhccCCCCCCCC
Q psy13670        314 REDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPWVSMG  380 (380)
Q Consensus       314 ~~~l~~ll~~l~~~~~~~~~~~~~~~~~la~~ACr~Aik~g~~Ls~~E~~~Ll~~L~~c~~P~~CPH  380 (380)
                      ...+.+++..|.+.. ..  ....+.++++++|||+|||+|+.|+.+||++||++|++|++||+|||
T Consensus       534 ~~~l~ell~~l~~~~-~~--~~~~~~~~las~ACr~AIk~g~~Ls~~E~~~Ll~~L~~~~~P~~CPH  597 (617)
T PRK00095        534 EELIRDLLDELAEEG-DS--DTLKERELLATMACHGAIRAGRRLTLEEMNALLRQLEATENPGTCPH  597 (617)
T ss_pred             HHHHHHHHHHHHhcC-Cc--chHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHhcccccCCCC
Confidence            555666666665432 11  12223378999999999999999999999999999999999999999

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]

Probab=100.00  E-value=2.4e-48  Score=406.44  Aligned_cols=170  Identities=28%  Similarity=0.401  Sum_probs=150.6

Q ss_pred             cccccceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhhcCC--CccccccceeeecCHHHHHHHHHhHHHHHh
Q psy13670        207 SMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLI--KSQKLVVPQNLHLTKINQCILKDNLPVFYK  284 (380)
Q Consensus       207 ~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~~~~--~sQ~LL~P~~l~l~~~e~~~l~~~~~~L~~  284 (380)
                      ..++.++++||++++|||++.+++||||||||||||++||+|+.....  ..|+||+|+.++|++.|...+.++.+.|.+
T Consensus       447 ~~~~~~~~i~q~~~~yil~e~~~~L~lvDqhaa~Eri~ye~l~~~~~~~~~~Q~LliP~~~~l~~~e~~~~~~~~~~l~~  526 (638)
T COG0323         447 DVFPLGEAIGQVHGTYILAEHEDGLVLVDQHAAHERILYEKLKNELGNVGELQPLLIPIRLELSPEEADVLEEHKEELEK  526 (638)
T ss_pred             cccccceEEEEecceEEEEEeCCCEEEEEhHHhHHHHHHHHHHHHhcccccccccccCeeeecCHHHHHHHHHHHHHHHh
Confidence            567889999999999999999999999999999999999999987433  699999999999999999999999999999


Q ss_pred             CCeEEEEecCCCCeEEEEecCCCCCccCChhhHHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhhhhcCCCCCHHHHHH
Q psy13670        285 NGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTG  364 (380)
Q Consensus       285 lGf~~~~~~~g~~~~~I~~vP~~l~~~~~~~~l~~ll~~l~~~~~~~~~~~~~~~~~la~~ACr~Aik~g~~Ls~~E~~~  364 (380)
                      +||+++  .+|++.+.|++||.++........+.+++..+.+ . .........++++++||||+|||+|+.|+.++|..
T Consensus       527 ~G~~i~--~~g~~~~~v~~vP~~l~~~~~~~~i~~l~~~~~~-~-~~~~~~~~~~~~~a~~aC~~svk~~~~l~~~~m~~  602 (638)
T COG0323         527 LGFEIE--SFGENSVAVRSVPAMLGKAEVQELIRELLDDLLE-G-KLKDLKELLEELAATMACRSAVKAGRELSAEEMNA  602 (638)
T ss_pred             cCEEEE--EcCCceEEEEecChhhcccchHHHHHHHHHHhhc-c-cccchhHHHHHHHHHHHHHHhhhcCCcCCHHHHHH
Confidence            999998  4688999999999998765556666777777765 3 22222345678999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCCC
Q psy13670        365 LVRNMGRIDQPWVSMG  380 (380)
Q Consensus       365 Ll~~L~~c~~P~~CPH  380 (380)
                      |+++|..|++||+|||
T Consensus       603 Ll~~~~~~~~~~~cpH  618 (638)
T COG0323         603 LLRDLEACPNPWTCPH  618 (638)
T ss_pred             HHHHHHhCCCccCCCC
Confidence            9999999999999999

>KOG1978|consensus

Probab=100.00  E-value=1.5e-37  Score=314.99  Aligned_cols=192  Identities=50%  Similarity=0.828  Sum_probs=173.6

Q ss_pred             cCCCcchhhHHHhhhhccccccccceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhhcCCCccccccceeeec
Q psy13670        188 IDPSKNKEAESELNRVIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHL  267 (380)
Q Consensus       188 ~~~~~~~~ae~~~~~~~~~~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~~~~~sQ~LL~P~~l~l  267 (380)
                      +.+..+..++.+......+.+|..+++|||++.+||++..+.+|+||||||++|..+||+|++...+.+|+|..|..++|
T Consensus       465 ~~~~~N~~~e~~~s~~v~k~df~~meiigqfNlgFIi~~l~~dlfIvdqha~dEk~Nfe~l~~~~~L~~Q~l~~P~~l~l  544 (672)
T KOG1978|consen  465 INPGHNDSVELEESREVAKADFSRMEIIGQFNLGFIIVKLEKDLFIVDQHASDEKRNFERLQSTTVLKAQPLICPQALDL  544 (672)
T ss_pred             cCcccchhhhchhhhcccccchhhcceeeeccccceeeeccCceEEeccchhhhhhhHHHHHHhcccccccccCcccccc
Confidence            34444544555555567788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhHHHHHhCCeEEEEecCC--CCeEEEEecCCCCCccCChhhHHHHHHHHhhcCCCCCCChHHHHHHHHHH
Q psy13670        268 TKINQCILKDNLPVFYKNGFEFSFDSSD--DGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASR  345 (380)
Q Consensus       268 ~~~e~~~l~~~~~~L~~lGf~~~~~~~g--~~~~~I~~vP~~l~~~~~~~~l~~ll~~l~~~~~~~~~~~~~~~~~la~~  345 (380)
                      ++.+...+.++++.|++.||.+++.+..  +..+++.++|....+.++..++.++|..|.+.. +....|..++.++|+.
T Consensus       545 s~~nE~vl~d~l~~f~knGF~~~~~~n~~~~~~~~l~~~p~skn~~fg~~dl~Eli~~l~~~~-~~~~rp~~vr~m~as~  623 (672)
T KOG1978|consen  545 SAINEMVLLDNLPLFEKNGFKVKIDENAPDGKRVRLLSVPVSKNQTFGVSDLKELISVLKNFP-EETYRPSKVRSMIASK  623 (672)
T ss_pred             CcccceeehhhhHHHHhcCceEeecCCCcccceeeecccccccccccCHHHHHHHHHHHhhCC-CcEeehHHHHHHHHHH
Confidence            9999999999999999999999975322  267889999999999999999999999999887 4447789999999999


Q ss_pred             HhhhhhhcCCCCCHHHHHHHHHHHhccCCCCCCCC
Q psy13670        346 ACRKSVMIGRALSVGEMTGLVRNMGRIDQPWVSMG  380 (380)
Q Consensus       346 ACr~Aik~g~~Ls~~E~~~Ll~~L~~c~~P~~CPH  380 (380)
                      |||.++|.|+.|+..+|..++..|...+.||.|||
T Consensus       624 AcR~Svmig~~L~~~dm~~iv~~L~~l~~pwnCpH  658 (672)
T KOG1978|consen  624 ACRSSVMIGDPLSKDDMTRIVRSLAELEHPWNCPH  658 (672)
T ss_pred             HhhhhhhcccccCHHHHHHHHHHHHHhcCCCCCCC
Confidence            99999999999999999999999999999999999

>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []

Probab=100.00  E-value=2.4e-34  Score=249.06  Aligned_cols=141  Identities=30%  Similarity=0.464  Sum_probs=113.7

Q ss_pred             cceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhhcC--CCccccccceeeecCHHHHHHHHHhHHHHHhCCeE
Q psy13670        211 KMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTL--IKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFE  288 (380)
Q Consensus       211 ~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~~~--~~sQ~LL~P~~l~l~~~e~~~l~~~~~~L~~lGf~  288 (380)
                      .+++|||++++|||++.+++||+||||||||||+||+|+++..  ..+|+|++|+.+++++.+...+.++.+.|++|||+
T Consensus         2 ~~~vlgq~~~~yil~~~~~~L~liDqHAAhERi~~E~l~~~~~~~~~~q~Ll~P~~~~ls~~e~~~l~~~~~~L~~~Gf~   81 (144)
T PF08676_consen    2 LLKVLGQLDNKYILAESEDGLYLIDQHAAHERILYEKLLKQLEEGEQSQPLLFPIELELSPQEAELLEENKEELEKLGFE   81 (144)
T ss_dssp             T-EEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHCCHCS-EEEEEEEEEEE--HHHHHHHHHHHHHHHHTT-E
T ss_pred             ceeeHhHhCCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHhhccCCCceecCCCccCCCCHHHHHHHHHHHHHHHhCCeE
Confidence            4799999999999999999999999999999999999998732  38999999999999999999999999999999999


Q ss_pred             EEEecCCCCeEEEEecCCCCCccCChhhHHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhhhhcCCCC
Q psy13670        289 FSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRAL  357 (380)
Q Consensus       289 ~~~~~~g~~~~~I~~vP~~l~~~~~~~~l~~ll~~l~~~~~~~~~~~~~~~~~la~~ACr~Aik~g~~L  357 (380)
                      ++.  +|++++.|++||.++........+.+++..+.+.. .  . +..+.++++++|||+|||+||+|
T Consensus        82 ~~~--~~~~~~~v~~vP~~l~~~~~~~~l~~ll~~l~~~~-~--~-~~~~~~~~~~~AC~~Aik~g~~L  144 (144)
T PF08676_consen   82 IEE--FGENSIIVRSVPAILREQDLEELLRELLEELQEKE-E--S-PEIIEELLASMACRSAIKAGDKL  144 (144)
T ss_dssp             EEE--ESTTEEEEEEEECCCTTSSHHHHHHHHHHHHCTCS-S----CCCHHHHHHHHHTTSSSSSS---
T ss_pred             EEE--ecCCEEEEEEeCcccccccHHHHHHHHHHHHHhCC-C--c-HHHHHHHHHHHHHHHhhcCCCCC
Confidence            984  67899999999999874433444555555555433 1  1 45678899999999999999986

MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.

>smart00853 MutL_C MutL C terminal dimerisation domain

Probab=99.94  E-value=1.9e-26  Score=197.55  Aligned_cols=131  Identities=30%  Similarity=0.442  Sum_probs=105.7

Q ss_pred             ceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhhc---CC-CccccccceeeecCHHHHHHHHHhHHHHHhCCe
Q psy13670        212 MKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTT---LI-KSQKLVVPQNLHLTKINQCILKDNLPVFYKNGF  287 (380)
Q Consensus       212 ~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~~---~~-~sQ~LL~P~~l~l~~~e~~~l~~~~~~L~~lGf  287 (380)
                      ++++||++++||+++.+++|++||||||||||+||++++..   .. .+|+||+|+.+++++.+...+.++.+.|++|||
T Consensus         2 ~~~l~qv~~~yil~~~~~~l~liDqhaA~ERi~~e~l~~~~~~~~~~~~Q~Ll~P~~i~l~~~e~~~l~~~~~~l~~~Gf   81 (136)
T smart00853        2 GRVLGQVHGTYILAESEDGLVLIDQHAAHERILYEQLKAKLQAGLLEKSQPLLIPVILELSPEEAALLEEHQELLARLGF   81 (136)
T ss_pred             ccEEEEEcCEEEEEEcCCCEEEEEhHHHHHHHHHHHHHHHHhcCCCccccccCCCEEEEcCHHHHHHHHHHHHHHHHcCe
Confidence            47899999999999999999999999999999999999752   23 479999999999999999999999999999999


Q ss_pred             EEEEecCCCCeEEEEecCCCCCccCChhhHHHHHHHHhhcCCCCCCChHHHHHHHHHHH
Q psy13670        288 EFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRA  346 (380)
Q Consensus       288 ~~~~~~~g~~~~~I~~vP~~l~~~~~~~~l~~ll~~l~~~~~~~~~~~~~~~~~la~~A  346 (380)
                      +++  .+|++++.|+++|.++........+.+++..+.+..  ....+...+++++++|
T Consensus        82 ~~~--~~~~~~~~i~~vP~~l~~~~~~~~l~~ll~~l~~~~--~~~~~~~~~~~la~~A  136 (136)
T smart00853       82 ELE--IFGGQSVILRSVPALLRQQNLQELIPELLDLLAEGG--STSLPQLVEALLASLA  136 (136)
T ss_pred             EEE--ccCCCEEEEEeECccccCcCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHhhC
Confidence            998  467899999999998764434455566666555422  2223444555666654

MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.

>KOG1977|consensus

Probab=99.83  E-value=1.3e-20  Score=190.86  Aligned_cols=176  Identities=22%  Similarity=0.349  Sum_probs=145.7

Q ss_pred             hccccccccceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhhcCCCccccccceeeecCHHHHHHHHHhHHHH
Q psy13670        203 VIKKSMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVF  282 (380)
Q Consensus       203 ~~~~~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~~~~~sQ~LL~P~~l~l~~~e~~~l~~~~~~L  282 (380)
                      .+++.++..++++-|++++||-+-.-+..-++||||++||+..|.+..+ .+.+-.|++|++|.+.|.+..+|..|.+.+
T Consensus       904 ~~nk~~i~~~qvlqqvDkkyi~~v~~~~~~~~~qha~dek~~~q~~~~k-~l~~s~li~~l~~kvlpm~~~ll~~Y~~~~  982 (1142)
T KOG1977|consen  904 RFNKGMIHSMQVLQQVDKKYIACVMSTKTEENGQHASDEKQQAQGSGRK-KLLSSTLIPPLEIKVLPMQRRLLWCYHKNL  982 (1142)
T ss_pred             hhcccchhhHHHHHhhchhheeeeeeccccccccchhHHHHHhhhhccc-cccccccccceeEEechhhHHHHHHHHHHh
Confidence            4566777889999999999999999999999999999999999987654 355678999999999999999999999999


Q ss_pred             HhCCeEEEEecCCCCeEEEEecCCCCCcc-----------CChhhHHHHHH---HHhhcCCCCCCChHHHHHHHHHHHhh
Q psy13670        283 YKNGFEFSFDSSDDGNVLLTSLPMSKNTT-----------LGREDIEELLF---MLQHTNSTEHCRPSRIRAMFASRACR  348 (380)
Q Consensus       283 ~~lGf~~~~~~~g~~~~~I~~vP~~l~~~-----------~~~~~l~~ll~---~l~~~~~~~~~~~~~~~~~la~~ACr  348 (380)
                      +.||+++.+-..|...+.+..+|..+.+.           .......++|+   +|++.. |....|..+.++|++.|||
T Consensus       983 ~d~gw~~~~~~~~~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~i~~~~el~~t~-gsstlP~tv~kVLnSkACr 1061 (1142)
T KOG1977|consen  983 EDLGWEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLELLQTT-GSSTLPLTVQKVLNSKACR 1061 (1142)
T ss_pred             hhhceEEecccccccceeccccceecccccchhhccccccccchhHHHHHHHHHHHhccC-CCCccCHHHHHHHhhhhhh
Confidence            99999998654555667777777665432           11223345554   344433 5566788899999999999


Q ss_pred             hhhhcCCCCCHHHHHHHHHHHhccCCCCCCCC
Q psy13670        349 KSVMIGRALSVGEMTGLVRNMGRIDQPWVSMG  380 (380)
Q Consensus       349 ~Aik~g~~Ls~~E~~~Ll~~L~~c~~P~~CPH  380 (380)
                      +|||+||.|+..|+-.||+.|.+|..||+|+|
T Consensus      1062 gAImFgD~L~~qEc~~lI~~Ls~c~lpFqCAH 1093 (1142)
T KOG1977|consen 1062 GAIMFGDGLSLQECCRLIEALSSCQLPFQCAH 1093 (1142)
T ss_pred             hceeeCCccCHHHHHHHHHHHHhcCCchhhcc
Confidence            99999999999999999999999999999999

>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1)

Probab=99.76  E-value=7.1e-19  Score=149.13  Aligned_cols=61  Identities=26%  Similarity=0.566  Sum_probs=59.1

Q ss_pred             cHHHHHHHhhCC-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhc
Q psy13670          2 KLVNEVYHQFNN-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYA   62 (380)
Q Consensus         2 ~~v~~~y~~~~~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~   62 (380)
                      |+|++||+++++ ++||++||+|+|||+.|||||||+|+||+|++|+.|+++|+++|+++|.
T Consensus        66 ~aI~~~Y~~~l~~~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~~L~  127 (127)
T cd03483          66 RAIENVYANYLPKGAHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVEDKLS  127 (127)
T ss_pred             HHHHHHHHHhCcCCCccEEEEEEEeChHHeeeccCCCccEEEecCHHHHHHHHHHHHHHHhC
Confidence            789999999998 9999999999999999999999999999999999999999999999874

This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.

>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL

Probab=99.71  E-value=1.7e-17  Score=139.98  Aligned_cols=61  Identities=23%  Similarity=0.390  Sum_probs=58.9

Q ss_pred             cHHHHHHHhhCC-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhc
Q psy13670          2 KLVNEVYHQFNN-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYA   62 (380)
Q Consensus         2 ~~v~~~y~~~~~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~   62 (380)
                      ++|++||+++++ ++||+|||+|+|||+.|||||||+|+||+|.+++.|+++|.++|+++|.
T Consensus        62 ~ai~~~y~~~~~~~~~P~~vL~l~ipp~~vDvNVhP~K~eV~f~~e~~i~~~i~~~i~~~L~  123 (123)
T cd03482          62 HAVRQAYSDVLHGGRHPAYVLYLELDPAQVDVNVHPAKHEVRFRDSRLVHDFIYHAVKKALA  123 (123)
T ss_pred             HHHHHHHHHhccCCCCcEEEEEEEcChHheeeccCCCccEEEECCHHHHHHHHHHHHHHHhC
Confidence            689999999998 9999999999999999999999999999999999999999999999874

EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.

>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2

Probab=99.69  E-value=4.6e-17  Score=138.99  Aligned_cols=61  Identities=30%  Similarity=0.557  Sum_probs=58.5

Q ss_pred             cHHHHHHHhhC---C-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhc
Q psy13670          2 KLVNEVYHQFN---N-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYA   62 (380)
Q Consensus         2 ~~v~~~y~~~~---~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~   62 (380)
                      |+|++||++++   + ++||+++|+|++||+.|||||||+|+||+|.+|+.|+++|+.+|+..|.
T Consensus        68 k~i~~~y~~~~~~~~~~~~P~~~L~i~~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v~~~~~  132 (132)
T cd03485          68 KLLRQYYSSAYRKSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLLESLYG  132 (132)
T ss_pred             HHHHHHHHHHhccccccCCCEEEEEEEcCCCceeeccCCccCEEEEcChHHHHHHHHHHHHHHcC
Confidence            78999999999   7 9999999999999999999999999999999999999999999998763

hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.

>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL

Probab=99.67  E-value=7.4e-17  Score=135.26  Aligned_cols=61  Identities=33%  Similarity=0.553  Sum_probs=55.2

Q ss_pred             cHHHHHHHhhCC-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhc
Q psy13670          2 KLVNEVYHQFNN-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYA   62 (380)
Q Consensus         2 ~~v~~~y~~~~~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~   62 (380)
                      |+|+++|++.++ ++||+|||+|++||+.|||||||+|+||+|.+|+.|+++|+++|+++|.
T Consensus        58 ~~I~~~y~~~~~~~~~P~~vL~i~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~~~L~  119 (119)
T PF01119_consen   58 KAINEAYRERLPKGRYPIFVLFIEIPPSEVDVNVHPAKREVRFRDEDEILNLIEEAIREALS  119 (119)
T ss_dssp             HHHHHHHHCTTCTTSB-EEEEEEE-SGGGEEETSSTTTT-EEETTHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhhcccCCCCceEEEEEEcchHHccccccccceEEEecCHHHHHHHHHHHHHHHhC
Confidence            789999998887 9999999999999999999999999999999999999999999999884

This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....

>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2)

Probab=99.65  E-value=2.9e-16  Score=135.68  Aligned_cols=62  Identities=47%  Similarity=0.839  Sum_probs=59.5

Q ss_pred             CcHHHHHHHhhCCCCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhc
Q psy13670          1 MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYA   62 (380)
Q Consensus         1 ~~~v~~~y~~~~~~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~   62 (380)
                      .|+|++||++++.++||+|||+|+|||+.|||||||+|+||+|++++.|+++|+++|+++|.
T Consensus        81 ~~aI~~~y~~~~~~~~P~~vL~i~vp~~~vDvNVhP~K~eV~f~~e~~i~~~i~~~v~~~~~  142 (142)
T cd03484          81 AKLINEVYKSFNSRQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRLIDTLKTSLSELFE  142 (142)
T ss_pred             HHHHHHHHHHhcCcCCcEEEEEEEeCCcceeeeeCCccCEEEEcChHHHHHHHHHHHHHHhC
Confidence            37899999999999999999999999999999999999999999999999999999999873

hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.

>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family

Probab=99.60  E-value=1.5e-15  Score=127.77  Aligned_cols=60  Identities=32%  Similarity=0.617  Sum_probs=57.9

Q ss_pred             cHHHHHHHhhCC-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhh
Q psy13670          2 KLVNEVYHQFNN-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSY   61 (380)
Q Consensus         2 ~~v~~~y~~~~~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l   61 (380)
                      |+|+++|+++++ ++||+|+|+|++||+.|||||||+|++|+|.+++.|+++|+.+++++|
T Consensus        62 ~ai~~~y~~~~~~~~~P~~~L~i~~~~~~~DvNvhP~K~eV~f~~~~~i~~~i~~~v~~~l  122 (122)
T cd00782          62 KAINEAYRSYLPKGRYPVFVLNLELPPELVDVNVHPTKREVRFSDEEEVLELIREALRSAL  122 (122)
T ss_pred             HHHHHHHHHhCcCCCCcEEEEEEEeChhheeeeeCCCCCEEEecCHHHHHHHHHHHHHHhC
Confidence            789999999998 999999999999999999999999999999999999999999998875

This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd

>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3)

Probab=99.60  E-value=1.3e-15  Score=131.47  Aligned_cols=61  Identities=25%  Similarity=0.403  Sum_probs=57.5

Q ss_pred             cHHHHHHHh--------hC-----------C-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhh
Q psy13670          2 KLVNEVYHQ--------FN-----------N-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSY   61 (380)
Q Consensus         2 ~~v~~~y~~--------~~-----------~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l   61 (380)
                      |+|+++|+.        .+           + ++||+|||+|+|||+.|||||||+|+||+|.+++.|+++|+.+|+++|
T Consensus        61 ~aI~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~vL~i~~p~~~vDvNvhP~K~eV~f~~~~~i~~~i~~~i~~~L  140 (141)
T cd03486          61 KLINKLFRKTSAVAKNKSSPQSKSSRRGKRSQESYPVFVLNITCPASEYDLSQEPSKTIIEFKDWKTLLPLILEVVKSFL  140 (141)
T ss_pred             HHHHHHHhhccccccccccccccccccccCCccCCCEEEEEEecCchHheeeeCCceeEEEecChHHHHHHHHHHHHHHh
Confidence            789999999        44           6 899999999999999999999999999999999999999999999987


Q ss_pred             c
Q psy13670         62 A   62 (380)
Q Consensus        62 ~   62 (380)
                      .
T Consensus       141 ~  141 (141)
T cd03486         141 K  141 (141)
T ss_pred             C
Confidence            3

MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.

>KOG1979|consensus

Probab=99.54  E-value=1.4e-13  Score=138.18  Aligned_cols=64  Identities=23%  Similarity=0.452  Sum_probs=60.8

Q ss_pred             cHHHHHHHhhCC-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhccCc
Q psy13670          2 KLVNEVYHQFNN-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAIGF   65 (380)
Q Consensus         2 ~~v~~~y~~~~~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~~~~   65 (380)
                      |+|.++|..++| +.+||++|.|+|||+.|||||||+|+||.|.++++|.+-|++.|...|...+
T Consensus       276 ~ale~VYa~yLpk~~~pFvYLsL~i~p~~vDVNVHPTK~eV~FL~qEeIie~I~~~ie~~L~~~d  340 (694)
T KOG1979|consen  276 HALEEVYAAYLPKGHHPFVYLSLNIDPENVDVNVHPTKREVHFLNQEEIIERICQQIEERLSALD  340 (694)
T ss_pred             HHHHHHHHHhcCCCCCceEEEEEecCHHHcccccCCCcceeEeecHHHHHHHHHHHHHHHHhccC
Confidence            689999999999 9999999999999999999999999999999999999999999999997633

>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins

Probab=98.72  E-value=7.8e-09  Score=83.82  Aligned_cols=41  Identities=34%  Similarity=0.616  Sum_probs=38.8

Q ss_pred             cHHHHHHHhhC---C-CCCceEEEEEEeCCCcceeeecCCCcEEE
Q psy13670          2 KLVNEVYHQFN---N-HQYPFIILNIEMSRDSVDVNVTPDKRQIF   42 (380)
Q Consensus         2 ~~v~~~y~~~~---~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~   42 (380)
                      ++|.++|++++   + +++|+++|++++|++.+||||||+|++|+
T Consensus        63 ~~i~~~~~~~~~~~~~~~~p~~vl~i~~~~~~~d~nv~p~K~~v~  107 (107)
T cd00329          63 KAVREAYTRALNGDDVRRYPVAVLSLKIPPSLVDVNVHPTKEEVR  107 (107)
T ss_pred             HHHHHHHHHHhcccCCCCCCEEEEEEEeChHHeeeCCCCCccccC
Confidence            68999999997   6 99999999999999999999999999984

This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch

>PRK14867 DNA topoisomerase VI subunit B; Provisional

Probab=87.12  E-value=0.51  Score=50.45  Aligned_cols=28  Identities=18%  Similarity=0.127  Sum_probs=26.1

Q ss_pred             cHHHHHHHhhCC-CCCceEEEEEEeCCCc
Q psy13670          2 KLVNEVYHQFNN-HQYPFIILNIEMSRDS   29 (380)
Q Consensus         2 ~~v~~~y~~~~~-~~~P~~~l~l~~~p~~   29 (380)
                      ++|.++|+.+++ ++||+|||+|++||-.
T Consensus       280 ~ai~~ay~~~l~~~~~P~~~L~l~i~~~~  308 (659)
T PRK14867        280 DLLLENYRDSVFWDTVVSCYLNFDFTKYF  308 (659)
T ss_pred             HHHHHHHhhcccCCCcceEEEEEEeCccc
Confidence            689999999999 9999999999999965

>KOG1977|consensus

Probab=81.14  E-value=1.1  Score=47.72  Aligned_cols=50  Identities=18%  Similarity=0.139  Sum_probs=47.1

Q ss_pred             CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhcc
Q psy13670         14 HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAI   63 (380)
Q Consensus        14 ~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~~   63 (380)
                      .-.|-|||++.+|--.+||-..|+|+-|.|.++..++.+|.+.++..|.+
T Consensus       261 ~~~P~yvi~v~cp~~ly~vs~epakt~ieF~~w~~~l~~I~~~~~~~~kk  310 (1142)
T KOG1977|consen  261 ICKPKYVINVQCPFCLYDVSMEPAKTLIEFQNWDTLLFCIQEGVKMFLKK  310 (1142)
T ss_pred             eccCcceeecccchhhhhhhcCcccchhhhhcchhhHhHHHHhhhhhhhc
Confidence            35799999999999999999999999999999999999999999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	380
4e4w_B	239	Structure Of The C-terminal Domain Of The Saccharom		4e-45
4fmn_B	240	Structure Of The C-terminal Domain Of The Saccharom		4e-45
1h7s_A	365	N-Terminal 40kda Fragment Of Human Pms2 Length = 36		2e-16
1ea6_A	364	N-Terminal 40kda Fragment Of Nhpms2 Complexed With		3e-16
1h7u_A	365	Hpms2-atpgs Length = 365		3e-16
3h4l_A	367	Crystal Structure Of N Terminal Domain Of A Dna Rep		4e-10
3ncv_A	220	Ngol Length = 220		5e-07

>pdb|4E4W|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Length = 239

Iteration: 1
 Score =  178 bits (452), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 143/217 (65%), Gaps = 14/217 (6%)
Query: 169 ARRTVQAQDRCVENRFHANIDPSKN-KEAESELNRVIKKSMFEKMKIVGQFNLGFIIV-- 225
           ++R  +AQ+  ++N+     D  ++ ++ E  L   + K+ F+KM++VGQFNLGFIIV  
Sbjct: 1   SKRKSEAQENIIKNK-----DELEDFEQGEKYLTLTVSKNDFKKMEVVGQFNLGFIIVTR 55
Query: 226 KYDS--DLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFY 283
           K D+  DLFI+DQHA+DEKYNFETLQ  T+ KSQKL++PQ + L+ I++ ++ DNLPVF 
Sbjct: 56  KVDNKYDLFIVDQHASDEKYNFETLQAVTVFKSQKLIIPQPVELSVIDELVVLDNLPVFE 115
Query: 284 KNGFEFSFDSSDD--GNVLLTSLPMSKNTTLGREDIEELLFMLQHTNST--EHCRPSRIR 339
           KNGF+   D  ++    V L SLP SK T     D  EL+ +++       ++ R S+IR
Sbjct: 116 KNGFKLKIDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIR 175
Query: 340 AMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
           +MFA RACR S+MIG+ L+   MT +V N+  +D+PW
Sbjct: 176 SMFAMRACRSSIMIGKPLNKKTMTRVVHNLSELDKPW 212

>pdb|4FMN|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A Fragment Of Ntg2 Length = 240

Iteration: 1
 Score =  178 bits (452), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 143/217 (65%), Gaps = 14/217 (6%)
Query: 169 ARRTVQAQDRCVENRFHANIDPSKN-KEAESELNRVIKKSMFEKMKIVGQFNLGFIIV-- 225
           ++R  +AQ+  ++N+     D  ++ ++ E  L   + K+ F+KM++VGQFNLGFIIV  
Sbjct: 2   SKRKSEAQENIIKNK-----DELEDFEQGEKYLTLTVSKNDFKKMEVVGQFNLGFIIVTR 56
Query: 226 KYDS--DLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCILKDNLPVFY 283
           K D+  DLFI+DQHA+DEKYNFETLQ  T+ KSQKL++PQ + L+ I++ ++ DNLPVF 
Sbjct: 57  KVDNKYDLFIVDQHASDEKYNFETLQAVTVFKSQKLIIPQPVELSVIDELVVLDNLPVFE 116
Query: 284 KNGFEFSFDSSDD--GNVLLTSLPMSKNTTLGREDIEELLFMLQHTNST--EHCRPSRIR 339
           KNGF+   D  ++    V L SLP SK T     D  EL+ +++       ++ R S+IR
Sbjct: 117 KNGFKLKIDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNIRCSKIR 176
Query: 340 AMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
           +MFA RACR S+MIG+ L+   MT +V N+  +D+PW
Sbjct: 177 SMFAMRACRSSIMIGKPLNKKTMTRVVHNLSELDKPW 213

>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2 Length = 365

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 45/61 (73%)
Query: 1   MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDS 60
            +LVNEVYH +N HQYPF++LNI +  + VD+NVTPDKRQI +  EKLLLA +K  +   
Sbjct: 303 CRLVNEVYHXYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGX 362
Query: 61  Y 61
           +
Sbjct: 363 F 363

>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp Length = 364

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 2   KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSY 61
           +LVNEVYH +N HQYPF++LNI +  + VD+NVTPDKRQI +  EKLLLA +K  +   +
Sbjct: 304 RLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMF 363

>pdb|1H7U|A Chain A, Hpms2-atpgs Length = 365

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 2   KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSY 61
           +LVNEVYH +N HQYPF++LNI +  + VD+NVTPDKRQI +  EKLLLA +K  +   +
Sbjct: 304 RLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMF 363

>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair Prote Length = 367

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 1   MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDS 60
           +K  NEVY  FNN Q+P + LN+E+    +DVNVTPDKR I + +E+ ++   K  ++D 
Sbjct: 298 LKCCNEVYKTFNNVQFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDY 357
Query: 61  Y 61
           Y
Sbjct: 358 Y 358

>pdb|3NCV|A Chain A, Ngol Length = 220

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 222 FIIVKYDSDLFIIDQHATDEKYNFETL----QKTTLIKSQKLVVPQNLHLTKINQCILKD 277
           +I+ + +  L +ID HA  E+ N+E +    Q+   ++SQ L++P     +      L D
Sbjct: 40  YILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALAD 99
Query: 278 NLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEEL----LFMLQHTNSTEHC 333
           +       G E    S   GN L      +    LG+ D+  L    L  L    S++  
Sbjct: 100 HAETLAGFGLEL---SDMGGNTLAVR---AAPVMLGKSDVVSLARDVLGELAQVGSSQTI 153
Query: 334 RPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNM 369
                R + A+ +C  S+  GR L++ EM  L+R+M
Sbjct: 154 ASHENR-ILATMSCHGSIRAGRRLTLPEMNALLRDM 188

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
3kdg_A	197	DNA mismatch repair protein MUTL; endonuclease, DN	1e-27
3ncv_A	220	DNA mismatch repair protein MUTL; endonuclease, di	3e-26
3h4l_A	367	DNA mismatch repair protein PMS1; ATP binding, DNA	2e-19
1h7s_A	365	PMS1 protein homolog 2; DNA repair, GHL ATPase, mi	5e-19
1x9z_A	188	DNA mismatch repair protein MUTL; alpha-beta fold,	1e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
3na3_A	348	DNA mismatch repair protein MLH1; MUTL protein hom	3e-05

>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A* Length = 197

 Score =  106 bits (268), Expect = 1e-27
 Identities = 32/173 (18%), Positives = 74/173 (42%), Gaps = 11/173 (6%)

Query: 209 FEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQK---TTLIKSQKLVVPQNL 265
              M  +GQ +  +I+ + ++ L+IIDQHA  E+  +E  ++       + Q+++VP   
Sbjct: 6   VPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTF 65

Query: 266 HLTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLF-ML 324
           H +     I++ +       G     +S    + ++   P        + +  EL+  ++
Sbjct: 66  HYSTNEALIIEQHKQELESVGVF--LESFGSNSYIVRCHP----AWFPKGEEAELIEEII 119

Query: 325 QHTNSTEHCRPSRIR-AMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
           Q    +++    ++R       +C+ S+   R L   E+  L+ ++     P+
Sbjct: 120 QQVLDSKNIDIKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPF 172

>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae} Length = 220

 Score =  103 bits (260), Expect = 3e-26
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 13/172 (7%)

Query: 212 MKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETL----QKTTLIKSQKLVVPQNLHL 267
              + Q    +I+ + +  L +ID HA  E+ N+E +    Q+   ++SQ L++P     
Sbjct: 30  GFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAA 89

Query: 268 TKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLF-MLQH 326
           +      L D+       G E          + + + P      LG+ D+  L   +L  
Sbjct: 90  SHEECAALADHAETLAGFGLEL--SDMGGNTLAVRAAP----VMLGKSDVVSLARDVLGE 143

Query: 327 TNSTEHCRP--SRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPW 376
                  +   S    + A+ +C  S+  GR L++ EM  L+R+M    +  
Sbjct: 144 LAQVGSSQTIASHENRILATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSN 195

>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367

 Score = 87.6 bits (218), Expect = 2e-19
 Identities = 27/61 (44%), Positives = 39/61 (63%)

Query: 2   KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSY 61
           K  NEVY  FNN Q+P + LN+E+    +DVNVTPDKR I + +E+ ++   K  ++D Y
Sbjct: 299 KCCNEVYKTFNNVQFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYY 358

Query: 62  A 62
            
Sbjct: 359 N 359

>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365

 Score = 86.5 bits (215), Expect = 5e-19
 Identities = 34/60 (56%), Positives = 45/60 (75%)

Query: 2   KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSY 61
           +LVNEVYH +N HQYPF++LNI +  + VD+NVTPDKRQI +  EKLLLA +K  +   +
Sbjct: 304 RLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMF 363

>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1 Length = 188

 Score = 82.0 bits (203), Expect = 1e-18
 Identities = 21/167 (12%), Positives = 63/167 (37%), Gaps = 13/167 (7%)

Query: 213 KIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQK-TTLIKSQKLVVPQNLHLTKIN 271
           +++   +    +++ D ++ ++     +       L      + +Q L++P  L ++   
Sbjct: 10  RVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEE 69

Query: 272 QCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLF-MLQHTNST 330
           +  L+       + G +F     D  +V + ++P      L +++++ L+  ++ +    
Sbjct: 70  KSALEKAQSALAELGIDFQS---DAQHVTIRAVP----LPLRQQNLQILIPELIGYLAKQ 122

Query: 331 EHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRIDQPWV 377
               P  I    A     +        S+ +   L+ ++ R+    V
Sbjct: 123 SVFEPGNIAQWIARNLMSEH----AQWSMAQAITLLADVERLCPQLV 165

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 5e-08
 Identities = 55/447 (12%), Positives = 121/447 (27%), Gaps = 175/447 (39%)

Query: 1   MKLVNEVYHQF--NNHQYPFIILNIEMSRDSVDVNVTPDKRQIFM--DHEKLLLATVKVH 56
           ++++ ++ +Q   N         NI++   S+      + R++     +E  LL      
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLL------ 248

Query: 57  ITDSYAIGFTVDGNNMNQSMEQDPSSDVDMEKIQRSNSEEVEH-----ETIPVPSEDNSN 111
           +                         +V        N++         + + + +     
Sbjct: 249 VLL-----------------------NV-------QNAKAWNAFNLSCKIL-LTTRFKQV 277

Query: 112 FSHEANLQQSPETVEPD----TPDETIEV--------IDDMPR--LQGSYRQSTPVTLSL 157
               +    +  +++      TPDE   +          D+PR  L  +     P    L
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-----P--RRL 330

Query: 158 DIIQDQLKARYAR----------RTVQAQDRCVEN--------RF--------HANIDPS 191
            II + ++   A           +     +  +           F         A+I P+
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PT 389

Query: 192 K----------NKEAESELNRVIKKSMFEK---------------------------MKI 214
                        +    +N++ K S+ EK                             I
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 215 VGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTLIKSQKLVVPQNLHLTKINQCI 274
           V  +N   I   +DSD  I       ++Y +  +                 HL  I    
Sbjct: 450 VDHYN---IPKTFDSDDLIPPY---LDQYFYSHI---------------GHHLKNIEHPE 488

Query: 275 LKDNLPVFYKNGFEF----------SFDSSDDGNVLLTSLP-----MSKNTTLGREDIEE 319
                 + + + F F          ++++S      L  L      +  N       +  
Sbjct: 489 RMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 320 LL-FMLQHTNSTEHCRPSRI--RAMFA 343
           +L F+ +   +    + + +   A+ A
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMA 574

>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 4   VNEVYHQF-NNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDS 60
           +  VY  +   + +PF+ L++E+S  +VDVNV P K ++   HE+ +L  V+ HI   
Sbjct: 277 IETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESK 334

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
3kdg_A	197	DNA mismatch repair protein MUTL; endonuclease, DN	100.0
3ncv_A	220	DNA mismatch repair protein MUTL; endonuclease, di	100.0
1x9z_A	188	DNA mismatch repair protein MUTL; alpha-beta fold,	100.0
3na3_A	348	DNA mismatch repair protein MLH1; MUTL protein hom	99.56
3h4l_A	367	DNA mismatch repair protein PMS1; ATP binding, DNA	99.55
1h7s_A	365	PMS1 protein homolog 2; DNA repair, GHL ATPase, mi	99.52
1b63_A	333	MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A	99.5
3rbn_A	284	DNA mismatch repair protein MLH1; structural genom	94.1

>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*

Probab=100.00  E-value=6.7e-45  Score=329.91  Aligned_cols=170  Identities=19%  Similarity=0.284  Sum_probs=145.5

Q ss_pred             cccccceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhh---cCCCccccccceeeecCHHHHHHHHHhHHHHH
Q psy13670        207 SMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKT---TLIKSQKLVVPQNLHLTKINQCILKDNLPVFY  283 (380)
Q Consensus       207 ~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~---~~~~sQ~LL~P~~l~l~~~e~~~l~~~~~~L~  283 (380)
                      ..++.+++|||++++|||++.+++|||||||||||||+||+|+++   ....+|+||+|+.++|++.|..++.++.+.|+
T Consensus         4 ~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~P~~l~ls~~e~~~l~~~~~~l~   83 (197)
T 3kdg_A            4 DRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVPLTFHYSTNEALIIEQHKQELE   83 (197)
T ss_dssp             CCCCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEEEEECCTTHHHHHHHTHHHHH
T ss_pred             ccCCCCeEEEEEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHccCCCCccccCCCEEEecCHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999999986   45789999999999999999999999999999


Q ss_pred             hCCeEEEEecCCCCeEEEEecCCCCCccCChhhHHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhhhhcCCCCCHHHHH
Q psy13670        284 KNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMT  363 (380)
Q Consensus       284 ~lGf~~~~~~~g~~~~~I~~vP~~l~~~~~~~~l~~ll~~l~~~~~~~~~~~~~~~~~la~~ACr~Aik~g~~Ls~~E~~  363 (380)
                      +|||+++  .+|++++.|++||.++........+.++++.+.+.. . .......+++++++|||+|||+|+.||.+||+
T Consensus        84 ~~Gf~~e--~~g~~~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~-~-~~~~~~~~~~~~~~ACr~AIk~g~~Ls~~Em~  159 (197)
T 3kdg_A           84 SVGVFLE--SFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSK-N-IDIKKLREEAAIMMSCKGSIKANRHLRNDEIK  159 (197)
T ss_dssp             HTTCCCE--ECSTTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHS-S-CCHHHHHHHHHHHHHHCC----CCCCCHHHHH
T ss_pred             hCCCEEE--ECCCCEEEEEecCcccccccHHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHhhHhhccCCCCCCHHHHH
Confidence            9999998  468899999999999875544556677777776544 1 11223445689999999999999999999999


Q ss_pred             HHHHHHhccCCCCCCCC
Q psy13670        364 GLVRNMGRIDQPWVSMG  380 (380)
Q Consensus       364 ~Ll~~L~~c~~P~~CPH  380 (380)
                      +||++|++|++||+|||
T Consensus       160 ~Ll~~L~~~~~p~~CpH  176 (197)
T 3kdg_A          160 ALLDDLRSTSDPFTCPH  176 (197)
T ss_dssp             HHHHHHHHSSCTTBCTT
T ss_pred             HHHHHHHcCCCCCcCCC
Confidence            99999999999999999

>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}

Probab=100.00  E-value=2.4e-44  Score=330.78  Aligned_cols=168  Identities=20%  Similarity=0.310  Sum_probs=144.4

Q ss_pred             cccccceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhh----cCCCccccccceeeecCHHHHHHHHHhHHHH
Q psy13670        207 SMFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKT----TLIKSQKLVVPQNLHLTKINQCILKDNLPVF  282 (380)
Q Consensus       207 ~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~----~~~~sQ~LL~P~~l~l~~~e~~~l~~~~~~L  282 (380)
                      ..++.+++|||++++|||++.+++|||||||||||||+||+|+++    ....+|+||+|+.++|++.|..++.++.+.|
T Consensus        25 ~~~p~g~vigQv~~~YIL~e~~~gL~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~P~~l~Ls~~e~~~l~~~~~~L  104 (220)
T 3ncv_A           25 ELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIPVTFAASHEECAALADHAETL  104 (220)
T ss_dssp             CCCTTCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCCceeeeeEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHhccCCccceeeCCCeEEEcCHHHHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999999984    3578999999999999999999999999999


Q ss_pred             HhCCeEEEEecCCCCeEEEEecCCCCCccCChhhHHHHHHHHhhcCC---CCCCChHHHHHHHHHHHhhhhhhcCCCCCH
Q psy13670        283 YKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNS---TEHCRPSRIRAMFASRACRKSVMIGRALSV  359 (380)
Q Consensus       283 ~~lGf~~~~~~~g~~~~~I~~vP~~l~~~~~~~~l~~ll~~l~~~~~---~~~~~~~~~~~~la~~ACr~Aik~g~~Ls~  359 (380)
                      ++|||+++  .+|++++.|++||.++.    ..++.+++.++++...   .....+..++++++++|||+|||+|+.||.
T Consensus       105 ~~lGf~ie--~fg~~~v~V~~vP~~l~----~~d~~~ll~~ll~~l~~~~~~~~~~~~~~~~~as~ACr~AIk~g~~Ls~  178 (220)
T 3ncv_A          105 AGFGLELS--DMGGNTLAVRAAPVMLG----KSDVVSLARDVLGELAQVGSSQTIASHENRILATMSCHGSIRAGRRLTL  178 (220)
T ss_dssp             HHTTCEEE--CCSTTEEEEEEEETTSC----CSCHHHHHHHHHHHHTTCC-----CTTHHHHHHHHTTCSSSCSSCCCCH
T ss_pred             HhCCCEEE--ECCCCEEEEEEcCcccC----CCCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence            99999998  56889999999999876    3455555544443211   111234567789999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCCCC
Q psy13670        360 GEMTGLVRNMGRIDQPWVSMG  380 (380)
Q Consensus       360 ~E~~~Ll~~L~~c~~P~~CPH  380 (380)
                      +||++||++|++|++||+|||
T Consensus       179 ~Em~~Ll~~L~~~~~P~~CPH  199 (220)
T 3ncv_A          179 PEMNALLRDMENTPRSNQCNH  199 (220)
T ss_dssp             HHHHHHHHHHHTSTTTTBCTT
T ss_pred             HHHHHHHHHHHhCCCCCcCCC
Confidence            999999999999999999999

>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1

Probab=100.00  E-value=1.9e-36  Score=272.48  Aligned_cols=156  Identities=11%  Similarity=0.149  Sum_probs=132.5

Q ss_pred             ccccceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhh--cCCCccccccceeeecCHHHHHHHHHhHHHHHhC
Q psy13670        208 MFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKT--TLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKN  285 (380)
Q Consensus       208 ~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~--~~~~sQ~LL~P~~l~l~~~e~~~l~~~~~~L~~l  285 (380)
                      ..+.++++||++++|||++.+++||||||||| |||+||++++.  ....+|+||+|+.++|++.|...+.++.+.|+++
T Consensus         5 ~~~~~~vlgQ~~~~yIl~~~~~~L~lIDQHAA-ERi~yE~l~~~~~~~~~~Q~LL~P~~l~ls~~e~~~l~~~~~~l~~~   83 (188)
T 1x9z_A            5 SQSFGRVLTIVHSDCALLERDGNISLLSLPVA-ERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEEKSALEKAQSALAEL   83 (188)
T ss_dssp             -CCCCEEEEEETTTEEEEEETTEEEEEEHHHH-HHHHHHHHHSBTTBCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHT
T ss_pred             cCCCceeeeeecCEEEEEEeCCCEEEEeHHHH-HHHHHHHHHHhcCCCCCcccCCCCEEEEeCHHHHHHHHHHHHHHHhC
Confidence            34678999999999999999999999999999 99999999976  3577999999999999999999999999999999


Q ss_pred             CeEEEEecCCCCeEEEEecCCCCCccCChhhHHHHHHHHhhcC-CCCCCChHHHHHHHHHHHhhhhhhcCCCCCHHHHHH
Q psy13670        286 GFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTN-STEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTG  364 (380)
Q Consensus       286 Gf~~~~~~~g~~~~~I~~vP~~l~~~~~~~~l~~ll~~l~~~~-~~~~~~~~~~~~~la~~ACr~Aik~g~~Ls~~E~~~  364 (380)
                      ||+++.  +|++ +.|++||.++.    ..++.+++.++++.. .+...   ..+++++++|||+ ||+|+.||.+||++
T Consensus        84 Gf~~e~--~g~~-~~v~~vP~~l~----~~~~~~li~~ll~~l~~~~~~---~~~~~~~~~AC~~-ik~g~~Ls~~em~~  152 (188)
T 1x9z_A           84 GIDFQS--DAQH-VTIRAVPLPLR----QQNLQILIPELIGYLAKQSVF---EPGNIAQWIARNL-MSEHAQWSMAQAIT  152 (188)
T ss_dssp             TCEEEE--CSSE-EEEEEEEGGGT----TSCHHHHHHHHHHHHTTCSSC---CHHHHHHHHHHTT-SCCCCSCCHHHHHH
T ss_pred             CcEEEE--cCCc-EEEEecCchhc----ccCHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHhh-CccCCCCCHHHHHH
Confidence            999994  5777 99999999976    344555554443321 11111   1267999999999 99999999999999


Q ss_pred             HHHHHhccCCCCCCCC
Q psy13670        365 LVRNMGRIDQPWVSMG  380 (380)
Q Consensus       365 Ll~~L~~c~~P~~CPH  380 (380)
                      ||++|++|     |||
T Consensus       153 Ll~~L~~~-----CpH  163 (188)
T 1x9z_A          153 LLADVERL-----CPQ  163 (188)
T ss_dssp             HHHHHHHH-----CHH
T ss_pred             HHHHHHhH-----CCC
Confidence            99999999     998

>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}

Probab=99.56  E-value=1.1e-15  Score=148.88  Aligned_cols=62  Identities=34%  Similarity=0.568  Sum_probs=38.0

Q ss_pred             cHHHHHHHhhCC-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhcc
Q psy13670          2 KLVNEVYHQFNN-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAI   63 (380)
Q Consensus         2 ~~v~~~y~~~~~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~~   63 (380)
                      |+|++||+.+++ ++||++||+|+|||+.|||||||+|+||+|.+|+.|+++|+.+|+++|..
T Consensus       275 ~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e~~i~~~i~~~v~~~l~~  337 (348)
T 3na3_A          275 KAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLLG  337 (348)
T ss_dssp             HHHHHHHHTTSCTTCBCEEEEEEECC----------------------CTHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCHHHHHHHHHHHHHHHHhc
Confidence            789999999998 99999999999999999999999999999999999999999999999986

>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}

Probab=99.55  E-value=2.4e-15  Score=147.59  Aligned_cols=62  Identities=44%  Similarity=0.746  Sum_probs=60.6

Q ss_pred             cHHHHHHHhhCCCCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhcc
Q psy13670          2 KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYAI   63 (380)
Q Consensus         2 ~~v~~~y~~~~~~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~~   63 (380)
                      |+|+++|+.+++++||++||+|+|||+.|||||||+|+||+|++|+.|+++|+.+|+++|..
T Consensus       299 ~ai~~~y~~~~~~~~P~~~L~l~~~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~l~~~~~~  360 (367)
T 3h4l_A          299 KCCNEVYKTFNNVQFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNR  360 (367)
T ss_dssp             HHHHHHHHTTCSSCBCCEEEEEECCGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcEEEEEEEcChHHcceeECCCCCEEEEcCHHHHHHHHHHHHHHHHhh
Confidence            78999999999999999999999999999999999999999999999999999999999986

>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*

Probab=99.52  E-value=6e-15  Score=144.98  Aligned_cols=61  Identities=56%  Similarity=0.996  Sum_probs=53.6

Q ss_pred             cHHHHHHHhhCCCCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhc
Q psy13670          2 KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYA   62 (380)
Q Consensus         2 ~~v~~~y~~~~~~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~   62 (380)
                      |+|+++|+.+++++||+++|+|++||+.|||||||+|+||+|++++.|+++|+.+|+++|+
T Consensus       304 ~ai~~~y~~~~~~~~P~~~L~l~~~p~~vDvNVhP~K~eV~f~~e~~i~~~i~~~~~~~~~  364 (365)
T 1h7s_A          304 RLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFD  364 (365)
T ss_dssp             HHHHHHHHTTCTTCBCCEEEEEECCGGGEEEC------CEEETTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhCccCCcEEEEEEEeChHHcceEECCCcCEEEEcCHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999999999999999999999999999986

>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*

Probab=99.50  E-value=1.2e-14  Score=141.37  Aligned_cols=61  Identities=20%  Similarity=0.328  Sum_probs=58.8

Q ss_pred             cHHHHHHHhhCC-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhc
Q psy13670          2 KLVNEVYHQFNN-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYA   62 (380)
Q Consensus         2 ~~v~~~y~~~~~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~   62 (380)
                      |+|+++|+.+++ ++||+|||+|+|||+.|||||||+|+||+|++++.|+++|+++|+++|.
T Consensus       272 ~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f~~~~~v~~~i~~~i~~~l~  333 (333)
T 1b63_A          272 HAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQ  333 (333)
T ss_dssp             HHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCEEEeCCHHHHHHHHHHHHHHHhC
Confidence            689999999988 9999999999999999999999999999999999999999999999873

>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}

Probab=94.10  E-value=0.45  Score=44.35  Aligned_cols=113  Identities=18%  Similarity=0.294  Sum_probs=73.4

Q ss_pred             ccccceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhhcC-CCccccccceee-e-------------------
Q psy13670        208 MFEKMKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKTTL-IKSQKLVVPQNL-H-------------------  266 (380)
Q Consensus       208 ~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~~~-~~sQ~LL~P~~l-~-------------------  266 (380)
                      .+.+..+||.++.++.+++.+..|||||-.+.-+-.-|...+.+.+ ...-.|-.|+.+ +                   
T Consensus        57 i~~~~tfVG~VD~~~aLiQ~~tkLYLvd~~~l~~ElFYQ~~L~~FgNfg~i~L~~P~~L~dLl~~al~~~~~~~~e~d~~  136 (284)
T 3rbn_A           57 MLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLSEELFYQILIYDFANFGVLRLSEPAPLFDLAMLALDSPESGWTEEDGP  136 (284)
T ss_dssp             HHHTCEEEEESSSSEEEEEETTEEEEEEHHHHHHHHHHHHHHHSTTCCEEEEEEEEEEHHHHHHHHHTSGGGTCCTTSCC
T ss_pred             HHHhCeEEEEECCCeeEEEeCCeEEEecHHHHHHHHHHHHHHHHhcCCCeEeeCCCCCHHHHHHHHhhcccccCCccccc
Confidence            4567899999999999999999999999999988888888877632 222223233321 0                   


Q ss_pred             ---cCHHHHHHHHHhHHHHHhCCeEEEEecCCCCeEEEEecCCCCCccCC-hhhHHHHHHHHh
Q psy13670        267 ---LTKINQCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLG-REDIEELLFMLQ  325 (380)
Q Consensus       267 ---l~~~e~~~l~~~~~~L~~lGf~~~~~~~g~~~~~I~~vP~~l~~~~~-~~~l~~ll~~l~  325 (380)
                         +...-...|.++.+.|..+ |.+++.+.|    .+.++|.++..... -..+-.++-.|.
T Consensus       137 ~~~~~e~i~~~L~~~~eML~EY-Fsi~Id~~g----~L~slPlLl~~Y~P~l~~LP~FllrL~  194 (284)
T 3rbn_A          137 KEGLAEYIVEFLKKKAEMLADY-FSLEIDEEG----NLIGLPLLIDNYVPPLEGLPIFILRLA  194 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HCCEECTTS----EEEEEEECSTTCCCCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-eeEEEeCCC----cEEEechhhcCCCCChHHHHHHHHHHh
Confidence               0111223566666766655 444443332    48899999864332 345666766665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	380
d1x9za_	182	d.292.1.1 (A:) DNA mismatch repair protein MutL {E	1e-28
d1h7sa1	134	d.14.1.3 (A:232-365) DNA mismatch repair protein P	1e-13
d1b63a1	115	d.14.1.3 (A:217-331) DNA mismatch repair protein M	1e-06

>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 182

class: Alpha and beta proteins (a+b)
fold: DNA mismatch repair protein MutL
superfamily: DNA mismatch repair protein MutL
family: DNA mismatch repair protein MutL
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (270), Expect = 1e-28
 Identities = 21/161 (13%), Positives = 58/161 (36%), Gaps = 11/161 (6%)

Query: 213 KIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETL-QKTTLIKSQKLVVPQNLHLTKIN 271
           +++   +    +++ D ++ ++     +       L      + +Q L++P  L ++   
Sbjct: 5   RVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEE 64

Query: 272 QCILKDNLPVFYKNGFEFSFDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTE 331
           +  L+       + G +F  D     +V + ++P+       +  I EL+  L       
Sbjct: 65  KSALEKAQSALAELGIDFQSD---AQHVTIRAVPLPLRQQNLQILIPELIGYLAK----- 116

Query: 332 HCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMGRI 372
             +        A    R  +      S+ +   L+ ++ R+
Sbjct: 117 --QSVFEPGNIAQWIARNLMSEHAQWSMAQAITLLADVERL 155

>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: DNA gyrase/MutL, second domain
domain: DNA mismatch repair protein PMS2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 1e-13
 Identities = 34/61 (55%), Positives = 45/61 (73%)

Query: 1   MKLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDS 60
            +LVNEVYH +N HQYPF++LNI +  + VD+NVTPDKRQI +  EKLLLA +K  +   
Sbjct: 72  CRLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGM 131

Query: 61  Y 61
           +
Sbjct: 132 F 132

>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 115

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: DNA gyrase/MutL, second domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 1   MKLVNEVYHQF-NNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITD 59
              + +         Q P  +L +E+    VDVNV P K ++     +L+   +   +  
Sbjct: 53  NHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLS 112

Query: 60  S 60
            
Sbjct: 113 V 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	380
d1x9za_	182	DNA mismatch repair protein MutL {Escherichia coli	100.0
d1b63a1	115	DNA mismatch repair protein MutL {Escherichia coli	99.74
d1h7sa1	134	DNA mismatch repair protein PMS2 {Human (Homo sapi	99.68

>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: DNA mismatch repair protein MutL
superfamily: DNA mismatch repair protein MutL
family: DNA mismatch repair protein MutL
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-35  Score=262.85  Aligned_cols=154  Identities=13%  Similarity=0.170  Sum_probs=130.3

Q ss_pred             ceEEEEEeCcEEEEEeCCeEEEEehhHHHHHHHHHHHHhh-cCCCccccccceeeecCHHHHHHHHHhHHHHHhCCeEEE
Q psy13670        212 MKIVGQFNLGFIIVKYDSDLFIIDQHATDEKYNFETLQKT-TLIKSQKLVVPQNLHLTKINQCILKDNLPVFYKNGFEFS  290 (380)
Q Consensus       212 ~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERilyE~l~~~-~~~~sQ~LL~P~~l~l~~~e~~~l~~~~~~L~~lGf~~~  290 (380)
                      .+++||++++|||++.++||+|||||||||||+||+|++. .++.+|+||+|+.++|++.+...+.++.+.|+++||+++
T Consensus         4 grvl~~v~~~Yil~e~~~gl~lidqhaA~eri~~e~l~~~~~~i~sQ~LL~P~~l~ls~~e~~~l~~~~~~L~~~Gf~~e   83 (182)
T d1x9za_           4 GRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEEKSALEKAQSALAELGIDFQ   83 (182)
T ss_dssp             CEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHSBTTBCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             hhhhhhhcCEEEEEEeCCceEEEeHHHHHHHHHHHHHHhccCCCCccccCCCeeecCCHHHHHHHHHHHHHHHHcCCEEE
Confidence            4899999999999999999999999999999999999764 567899999999999999999999999999999999998


Q ss_pred             EecCCCCeEEEEecCCCCCccCChhhHHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHh
Q psy13670        291 FDSSDDGNVLLTSLPMSKNTTLGREDIEELLFMLQHTNSTEHCRPSRIRAMFASRACRKSVMIGRALSVGEMTGLVRNMG  370 (380)
Q Consensus       291 ~~~~g~~~~~I~~vP~~l~~~~~~~~l~~ll~~l~~~~~~~~~~~~~~~~~la~~ACr~Aik~g~~Ls~~E~~~Ll~~L~  370 (380)
                      .  +| +++.|++||.++........+.+++..+.+..       ....+.++++|||+|||+|+.||.+||.+||++|.
T Consensus        84 ~--~g-~~i~v~~iP~~l~~~~~~~~i~ell~~l~~~~-------~~~~~~la~~ac~~aik~~~~Ls~~E~~~LL~ele  153 (182)
T d1x9za_          84 S--DA-QHVTIRAVPLPLRQQNLQILIPELIGYLAKQS-------VFEPGNIAQWIARNLMSEHAQWSMAQAITLLADVE  153 (182)
T ss_dssp             E--CS-SEEEEEEEEGGGTTSCHHHHHHHHHHHHTTCS-------SCCHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHH
T ss_pred             c--cc-cceeeecCCcccccCCHHHHHHHHHHHHHhCC-------chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence            4  44 79999999999764333444445555544332       11235788999999999999999999999999995


Q ss_pred             ccCCCCCCCC
Q psy13670        371 RIDQPWVSMG  380 (380)
Q Consensus       371 ~c~~P~~CPH  380 (380)
                      .     .|||
T Consensus       154 ~-----~Cp~  158 (182)
T d1x9za_         154 R-----LCPQ  158 (182)
T ss_dssp             H-----HCHH
T ss_pred             H-----hCCC
Confidence            5     3776

>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: DNA gyrase/MutL, second domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=5e-19  Score=143.97  Aligned_cols=61  Identities=20%  Similarity=0.328  Sum_probs=59.0

Q ss_pred             cHHHHHHHhhCC-CCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhc
Q psy13670          2 KLVNEVYHQFNN-HQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYA   62 (380)
Q Consensus         2 ~~v~~~y~~~~~-~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~   62 (380)
                      ++|++||+++++ ++||+|+|+|+|||+.|||||||+|+||+|.+|+.|+++|+.+|+++|.
T Consensus        54 ~ai~~~y~~~l~~~~~P~~~L~l~i~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~v~~~L~  115 (115)
T d1b63a1          54 HAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQ  115 (115)
T ss_dssp             HHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhccCCCCceEEEEEEEcccEEEEEeCCCccEEEEcCHHHHHHHHHHHHHHHhC
Confidence            689999999998 9999999999999999999999999999999999999999999999874

>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: DNA gyrase/MutL, second domain
domain: DNA mismatch repair protein PMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-17  Score=138.92  Aligned_cols=61  Identities=56%  Similarity=0.996  Sum_probs=52.3

Q ss_pred             cHHHHHHHhhCCCCCceEEEEEEeCCCcceeeecCCCcEEEeCChHHHHHHHHHHHHHhhc
Q psy13670          2 KLVNEVYHQFNNHQYPFIILNIEMSRDSVDVNVTPDKRQIFMDHEKLLLATVKVHITDSYA   62 (380)
Q Consensus         2 ~~v~~~y~~~~~~~~P~~~l~l~~~p~~iDvNvhP~K~ev~f~~~~~i~~~i~~~~~~~l~   62 (380)
                      |+|++||+.+..++||++||+|+|||+.|||||||+|+||+|++|+.|++.|+++|.+.|+
T Consensus        73 ~ai~~~y~~~~~~~~P~~~L~i~ip~~~vDVNVhP~K~eV~f~~e~~i~~~i~~~l~~~~~  133 (134)
T d1h7sa1          73 RLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFD  133 (134)
T ss_dssp             HHHHHHHHTTCTTCBCCEEEEEECCGGGEEEC------CEEETTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCCCCEEEEEEEecCceEEecCCCcccEEEEcCHHHHHHHHHHHHHHHhc
Confidence            7899999987669999999999999999999999999999999999999999999999886