Psyllid ID: psy13746
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 294 | 2.2.26 [Sep-21-2011] | |||||||
| Q5RDZ2 | 319 | Lambda-crystallin homolog | yes | N/A | 0.785 | 0.724 | 0.427 | 2e-59 | |
| Q9Y2S2 | 319 | Lambda-crystallin homolog | yes | N/A | 0.785 | 0.724 | 0.427 | 2e-59 | |
| Q99KP3 | 319 | Lambda-crystallin homolog | yes | N/A | 0.823 | 0.758 | 0.426 | 2e-52 | |
| Q811X6 | 319 | Lambda-crystallin homolog | yes | N/A | 0.823 | 0.758 | 0.423 | 3e-52 | |
| Q8SQ26 | 322 | Lambda-crystallin homolog | yes | N/A | 0.785 | 0.717 | 0.423 | 5e-52 | |
| P14755 | 319 | Lambda-crystallin OS=Oryc | yes | N/A | 0.785 | 0.724 | 0.419 | 2e-51 | |
| Q8SPX7 | 321 | Lambda-crystallin homolog | yes | N/A | 0.816 | 0.747 | 0.411 | 1e-50 | |
| Q8CUW0 | 307 | L-carnitine dehydrogenase | yes | N/A | 0.591 | 0.566 | 0.401 | 5e-33 | |
| Q8CQB9 | 321 | L-carnitine dehydrogenase | yes | N/A | 0.591 | 0.542 | 0.384 | 1e-31 | |
| Q4V182 | 326 | L-carnitine dehydrogenase | yes | N/A | 0.714 | 0.644 | 0.348 | 9e-31 |
| >sp|Q5RDZ2|CRYL1_PONAB Lambda-crystallin homolog OS=Pongo abelii GN=CRYL1 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/274 (42%), Positives = 163/274 (59%), Gaps = 43/274 (15%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
G+IG++WAM+FAS G ++
Sbjct: 15 GVIGRSWAMLFASGG-------------------------------------------FQ 31
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
V LYD+ +QI NA I+ ++ Q G LKGSLS EEQ LISG P ++E +E A+ I
Sbjct: 32 VKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSLISGCPNIQEAVEGAMHI 91
Query: 140 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY 199
QE VPE L++K +++ +D + ILSSSTS +PS L H Q IVAHPVNPPY
Sbjct: 92 QECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAHPVNPPY 151
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
+IPLVE+VP T+ + RT +M +IG P+ + E+ GF LNR+Q+A+++E + LV
Sbjct: 152 YIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISEAWRLVE 211
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+G++S D+D VMSEGLG+RYAF+GPLET+HLN+
Sbjct: 212 EGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNA 245
|
Pongo abelii (taxid: 9601) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 5 |
| >sp|Q9Y2S2|CRYL1_HUMAN Lambda-crystallin homolog OS=Homo sapiens GN=CRYL1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/274 (42%), Positives = 163/274 (59%), Gaps = 43/274 (15%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
G+IG++WAM+FAS G ++
Sbjct: 15 GVIGRSWAMLFASGG-------------------------------------------FQ 31
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
V LYD+ +QI NA I+ ++ Q G LKGSLS EEQ LISG P ++E +E A+ I
Sbjct: 32 VKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSLISGCPNIQEAVEGAMHI 91
Query: 140 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY 199
QE VPE L++K +++ +D + ILSSSTS +PS L H Q IVAHPVNPPY
Sbjct: 92 QECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAHPVNPPY 151
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
+IPLVE+VP T+ + RT +M +IG P+ + E+ GF LNR+Q+A+++E + LV
Sbjct: 152 YIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISEAWRLVE 211
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+G++S D+D VMSEGLG+RYAF+GPLET+HLN+
Sbjct: 212 EGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNA 245
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|Q99KP3|CRYL1_MOUSE Lambda-crystallin homolog OS=Mus musculus GN=Cryl1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 164/286 (57%), Gaps = 44/286 (15%)
Query: 8 PAQGGFYPDGIIGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL 67
PA GG G GLIG++WAM+FAS G
Sbjct: 4 PAAGGVVIVGS-GLIGRSWAMLFASGG--------------------------------- 29
Query: 68 KGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP 127
+KV LYD+ +QI +A I+ ++ Q G LKGSLS E Q LISG
Sbjct: 30 ----------FKVKLYDIEQQQITDALENIRKEMKSLEQSGSLKGSLSAERQLSLISGCG 79
Query: 128 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRS 187
L E +E A+ IQE VPE L++K +++ +D + ILSSS+S LPS L H
Sbjct: 80 NLAEAVEGAVHIQECVPENLELKKKIFAQLDRIVDDRVILSSSSSCLLPSKLFSGLAHVK 139
Query: 188 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247
Q IVAHPVNPPY++PLVE+VP T+ + RT +M +IG PV + EI GF LNR+Q
Sbjct: 140 QCIVAHPVNPPYYVPLVELVPHPETAPATMDRTYALMKKIGQSPVRVLKEIDGFVLNRLQ 199
Query: 248 FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+AV++E + LV + ++S D+D VMS+GLG+RYAF+GPLET+HLN+
Sbjct: 200 YAVISEAWRLVEEEIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNA 245
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|Q811X6|CRYL1_RAT Lambda-crystallin homolog OS=Rattus norvegicus GN=Cryl1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 165/286 (57%), Gaps = 44/286 (15%)
Query: 8 PAQGGFYPDGIIGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL 67
PA GG G GLIG++WAM+FAS G
Sbjct: 4 PAAGGVVIIGS-GLIGRSWAMLFASGG--------------------------------- 29
Query: 68 KGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP 127
+KV LYD+ +QI NA +I+ ++ Q G LKGSL E+Q LISG
Sbjct: 30 ----------FKVKLYDIEQQQITNALESIRKEMKSLEQSGSLKGSLGAEQQLSLISGCG 79
Query: 128 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRS 187
L E +E A+ IQE VPE L++K +++ +D + ILSSS+S LPS L H
Sbjct: 80 NLAEAVEGAMHIQECVPENLELKKKIFAQLDRIVDDQVILSSSSSCLLPSKLFTGLAHVK 139
Query: 188 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247
Q IVAHPVNPPY++PLVE+VP T+ + RT +M +I PV + EI GF LNR+Q
Sbjct: 140 QCIVAHPVNPPYYVPLVELVPHPETAPATMDRTYALMKKIRQTPVRVLKEIDGFVLNRLQ 199
Query: 248 FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+A+++E + LV +G++S D+D VMS+GLG+RYAF+GPLET+HLN+
Sbjct: 200 YAIISEAWRLVEEGIVSPNDLDLVMSDGLGMRYAFIGPLETMHLNA 245
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|Q8SQ26|CRYL1_PIG Lambda-crystallin homolog OS=Sus scrofa GN=CRYL1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/274 (42%), Positives = 159/274 (58%), Gaps = 43/274 (15%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
GLIG++WAM+FAS G ++
Sbjct: 18 GLIGRSWAMLFASGG-------------------------------------------FR 34
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
V LYD+ +Q+ A +TI+ ++ Q G LKGSL EEQ LISG LRE +E + I
Sbjct: 35 VKLYDIEQQQVTGALDTIRKEMKLLEQSGALKGSLGAEEQLALISGCSDLREAVEGTVHI 94
Query: 140 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY 199
QE VPE L++K Q++ +D + N +LSSS+S LPS L H Q +VAHPVNPPY
Sbjct: 95 QECVPENLELKQQLFAQLDQIVDGNVVLSSSSSCLLPSKLFAGLVHVRQCLVAHPVNPPY 154
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
+PLVE+VP T+ + RT +M +IG PV + E+ GFALNR+Q+A++ E + LV
Sbjct: 155 HVPLVELVPHPETAPATMARTYALMRQIGQSPVRILKEVDGFALNRLQYALIGEAWRLVE 214
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
++S D+D VMS+GLGLRYAF+GPLET+HLN+
Sbjct: 215 ARIVSPGDLDLVMSDGLGLRYAFIGPLETMHLNA 248
|
Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|P14755|CRYL1_RABIT Lambda-crystallin OS=Oryctolagus cuniculus GN=CRYL1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/274 (41%), Positives = 156/274 (56%), Gaps = 43/274 (15%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
GL+G++WAM+FAS G ++
Sbjct: 15 GLVGRSWAMLFASGG-------------------------------------------FR 31
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
V LYD+ QI A I+ ++ Q G LKGSLS EEQ LIS L E +E + I
Sbjct: 32 VKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVEGVVHI 91
Query: 140 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY 199
QE VPE L +K +++ +D + +LSSS+S LPS L H Q IVAHPVNPPY
Sbjct: 92 QECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPY 151
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
+IPLVE+VP TS + RT +M +IG PV + EI GF LNR+Q+A+++E + LV
Sbjct: 152 YIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVE 211
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+G++S D+D VMS+GLG+RYAF+GPLET+HLN+
Sbjct: 212 EGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNA 245
|
Functions as crystallin in the rabbit eye lens. Has high L-gulonate 3-dehydrogenase activity. Oryctolagus cuniculus (taxid: 9986) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|Q8SPX7|CRYL1_BOVIN Lambda-crystallin homolog OS=Bos taurus GN=CRYL1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 163/287 (56%), Gaps = 47/287 (16%)
Query: 11 GGFYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGC 66
G P G+ GLIG++WAM+FASA
Sbjct: 5 GSSAPGGVAVVGSGLIGRSWAMLFASA--------------------------------- 31
Query: 67 LKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT 126
G++V L+D+ Q+ +A +++ ++ G LKG L EEQ LISG
Sbjct: 32 ----------GFRVKLFDIEPRQVTDALVSLRKEMKMLELSGYLKGELGAEEQLSLISGC 81
Query: 127 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR 186
LRE +E A+ +QE VPE L++K +++ +D + ILSSS+S LPS L H
Sbjct: 82 SDLREAVEGALHVQECVPENLELKRKLFAQLDKIADDHVILSSSSSCLLPSKLFAGLAHV 141
Query: 187 SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 246
Q +VAHPVNPPY++PLVE+VP T+ + RT +M +G PV L EI GFALNR+
Sbjct: 142 KQCLVAHPVNPPYYVPLVELVPHPETAPATVDRTYALMRRVGQSPVRLLREIDGFALNRL 201
Query: 247 QFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
Q+AV+ E + LV +GV+S D+D VMS+GLGLRYAF+GPLET+HLN+
Sbjct: 202 QYAVIAEAWRLVEEGVVSPGDLDLVMSDGLGLRYAFIGPLETMHLNA 248
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 5 |
| >sp|Q8CUW0|LCDH_OCEIH L-carnitine dehydrogenase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=lcdH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 104/182 (57%), Gaps = 8/182 (4%)
Query: 118 EQFGLISGT--------PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169
EQ GL G + E ++DA IQESVPE ++KH V + ID F SNTI+ S
Sbjct: 52 EQLGLKEGASKDSLTFVDSIEEAVKDADLIQESVPERYELKHGVLKEIDRFAHSNTIIGS 111
Query: 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGM 229
STS P+ L H + +VAHP NP Y +PLVEIV T++ + R + M
Sbjct: 112 STSGIKPTDLQIGLNHPERLVVAHPFNPVYLLPLVEIVGGEATTKEITNRASVYYESLQM 171
Query: 230 KPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETI 289
KP+ + EI GF +R+ A+ E HLV+DG+ + +++D+ ++ G GLR+A +GP T
Sbjct: 172 KPMVIEKEIEGFVADRLMEALWREALHLVNDGIATTEEVDKAITYGAGLRWAQMGPFMTF 231
Query: 290 HL 291
HL
Sbjct: 232 HL 233
|
Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine. Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) (taxid: 221109) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 EC: 8 |
| >sp|Q8CQB9|LCDH_STAES L-carnitine dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=lcdH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 103/182 (56%), Gaps = 8/182 (4%)
Query: 118 EQFGL--------ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169
EQ GL ++ TP L E ++DA IQE+VPE+ +IK V + ID + + S
Sbjct: 51 EQMGLAENASIQNLTFTPHLEEAVKDADHIQENVPEVEEIKDAVLKEIDFYAKPEATIGS 110
Query: 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGM 229
STS +PS L + +H + +VAHP +P Y +PLVEIVP TSE + +I IGM
Sbjct: 111 STSGIMPSELQANLSHPERLVVAHPFHPVYILPLVEIVPGKQTSEETTVKAEQIYESIGM 170
Query: 230 KPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETI 289
+ + EI G +R+ A+ E H+V+DG+ + +++D+ + GLRYA GP T
Sbjct: 171 DVLHVRHEIEGHIADRLMEALWRESLHIVNDGIATTEEVDKAFTHAAGLRYAQYGPFMTF 230
Query: 290 HL 291
HL
Sbjct: 231 HL 232
|
Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine. Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 EC: 8 |
| >sp|Q4V182|LCDH_BACCZ L-carnitine dehydrogenase OS=Bacillus cereus (strain ZK / E33L) GN=lcdH PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 113/215 (52%), Gaps = 5/215 (2%)
Query: 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDA 136
GY V D + +I++ ++G +G+ F L L + + DA
Sbjct: 35 GYDVVATDPAKNAEVRMRQSIENAWPALEKQGLAEGASKDRLTFELD-----LAKAVADA 89
Query: 137 IFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVN 196
IQE+VPE +K +V ID F S I++SSTS PS+L E + IVAHP N
Sbjct: 90 DLIQENVPEREALKRRVLAEIDHFSKSEAIIASSTSGLKPSILQEDCQRPERVIVAHPFN 149
Query: 197 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYH 256
P Y IPLVE++ TS I + + I MKP+ ++TE+ G +R+ A+ E H
Sbjct: 150 PVYLIPLVEVIGGKDTSPETINISEQFYQSIKMKPLVISTEVEGHIADRLMEAIWREALH 209
Query: 257 LVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
L++DGV + +++D + G GLR+A +GP T+HL
Sbjct: 210 LINDGVATTEEVDAAIIYGPGLRWALMGPFLTLHL 244
|
Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine. Bacillus cereus (strain ZK / E33L) (taxid: 288681) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 294 | ||||||
| 158285772 | 315 | AGAP007378-PB [Anopheles gambiae str. PE | 0.785 | 0.733 | 0.485 | 7e-71 | |
| 195040405 | 318 | GH12278 [Drosophila grimshawi] gi|193900 | 0.795 | 0.735 | 0.469 | 3e-69 | |
| 195134454 | 313 | GI10976 [Drosophila mojavensis] gi|19390 | 0.795 | 0.747 | 0.469 | 9e-69 | |
| 45549573 | 315 | CG9914 [Drosophila melanogaster] gi|3358 | 0.795 | 0.742 | 0.476 | 1e-68 | |
| 195351396 | 318 | GM13412 [Drosophila sechellia] gi|194124 | 0.795 | 0.735 | 0.476 | 2e-68 | |
| 312384823 | 304 | hypothetical protein AND_01493 [Anophele | 0.785 | 0.759 | 0.474 | 2e-68 | |
| 194770170 | 317 | GF19071 [Drosophila ananassae] gi|190619 | 0.795 | 0.738 | 0.469 | 4e-68 | |
| 195403081 | 318 | GJ18534 [Drosophila virilis] gi|19414096 | 0.795 | 0.735 | 0.469 | 5e-68 | |
| 195448304 | 316 | GK25055 [Drosophila willistoni] gi|19416 | 0.795 | 0.740 | 0.476 | 7e-68 | |
| 194893905 | 315 | GG19334 [Drosophila erecta] gi|190649613 | 0.795 | 0.742 | 0.473 | 1e-67 |
| >gi|158285772|ref|XP_308454.4| AGAP007378-PB [Anopheles gambiae str. PEST] gi|347965269|ref|XP_003435742.1| AGAP013544-PA [Anopheles gambiae str. PEST] gi|333466437|gb|EGK96241.1| AGAP013544-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 273 bits (698), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 133/274 (48%), Positives = 176/274 (64%), Gaps = 43/274 (15%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
GLIG++WAM+FA G Y+
Sbjct: 16 GLIGRSWAMLFAGVG-------------------------------------------YQ 32
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
V++YD++ E +E A + L+ ++G ++G+LS EQF I GT L++ + DAI++
Sbjct: 33 VTIYDIIPEIVEKALKETKLELESVEKQGTIRGTLSAAEQFACIRGTDNLKDAVTDAIYV 92
Query: 140 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY 199
QE VPE L IK ++Y +D + NTIL+SSTS+F+PS+ SE HR+Q +VAHPVNPPY
Sbjct: 93 QECVPERLDIKKKLYGELDGLVGPNTILASSTSTFMPSLFSEDLKHRAQVLVAHPVNPPY 152
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
++PLVEIVPA WT T+ RE+MTEIG KPVTL+ +I GFALNRIQ+A+LNE + LV
Sbjct: 153 YVPLVEIVPAPWTKPEYTTKARELMTEIGQKPVTLSRQIEGFALNRIQYAILNETWRLVA 212
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
DG+LS KDID VMSEGLG+RYAFLGPLET HLN+
Sbjct: 213 DGILSVKDIDVVMSEGLGMRYAFLGPLETAHLNA 246
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195040405|ref|XP_001991062.1| GH12278 [Drosophila grimshawi] gi|193900820|gb|EDV99686.1| GH12278 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 131/279 (46%), Positives = 179/279 (64%), Gaps = 45/279 (16%)
Query: 17 GIIG--LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
GI+G LIG++W+M+FAS G
Sbjct: 11 GIVGSGLIGRSWSMLFASVG---------------------------------------- 30
Query: 75 HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 134
Y+V+LYD+L EQ++ A Q L + KG L+G L+ ++QF ISGT ++E +
Sbjct: 31 ---YQVTLYDILPEQVQGALTATQKELLNLETKGLLRGKLTAKDQFSCISGTNDIKELAK 87
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
A FIQE +PE L+ K ++++ +D + SNTILSSSTS+FLPS+ + + H+ +V+HP
Sbjct: 88 GAFFIQECIPEKLEWKQELFKKLDDVVDSNTILSSSTSTFLPSLFTANLKHKHNTVVSHP 147
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNEC 254
VNPPY++PLVEIVPA WT V+ RTR++M EIG KPVTL+ EI GFALNRIQ+A+LNE
Sbjct: 148 VNPPYYVPLVEIVPAPWTKPEVVQRTRDLMDEIGQKPVTLSREIEGFALNRIQYAILNET 207
Query: 255 YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV G+L+ +DID VMS+GLG+RYAFLGPLET HLN+
Sbjct: 208 WRLVESGILNVRDIDSVMSDGLGMRYAFLGPLETAHLNA 246
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195134454|ref|XP_002011652.1| GI10976 [Drosophila mojavensis] gi|193906775|gb|EDW05642.1| GI10976 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 266 bits (680), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 131/279 (46%), Positives = 177/279 (63%), Gaps = 45/279 (16%)
Query: 17 GIIG--LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
GI+G LIG++W+M+FAS G
Sbjct: 5 GIVGSGLIGRSWSMLFASVG---------------------------------------- 24
Query: 75 HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 134
Y+V LYD+L EQ++ A Q L + KG L+G L+ +QF ISGT ++E ++
Sbjct: 25 ---YQVMLYDILPEQVQGALKATQKELVELEAKGLLRGKLNAAQQFSCISGTNDIKELVK 81
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
AIFIQE +PE L K ++++ +D + NTILSSSTS+FLPS+ + + H+ +V+HP
Sbjct: 82 GAIFIQECIPEKLDWKQELFKKLDDVVEDNTILSSSTSTFLPSLFTANLKHKQNTVVSHP 141
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNEC 254
VNPPY++PLVEIVPA WT V+ +TR++M EIG KPVTL+ EI GFALNRIQ+A+LNE
Sbjct: 142 VNPPYYVPLVEIVPAPWTKPEVVQKTRDLMDEIGQKPVTLSREIEGFALNRIQYAILNET 201
Query: 255 YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV G+L+ KDID VMS+GLG+RYAFLGPLET HLN+
Sbjct: 202 WRLVEAGILNVKDIDSVMSDGLGMRYAFLGPLETAHLNA 240
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|45549573|ref|NP_573114.2| CG9914 [Drosophila melanogaster] gi|33589300|gb|AAQ22417.1| RH68464p [Drosophila melanogaster] gi|45447016|gb|AAF48586.2| CG9914 [Drosophila melanogaster] gi|220959622|gb|ACL92354.1| CG9914-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 133/279 (47%), Positives = 173/279 (62%), Gaps = 45/279 (16%)
Query: 17 GIIG--LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
GI+G LIG++W+M+FAS G
Sbjct: 9 GIVGSGLIGRSWSMLFASVG---------------------------------------- 28
Query: 75 HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 134
Y+V LYD+L EQ+ A Q LQD KG L+G L+ +QF ISGT L+E ++
Sbjct: 29 ---YQVVLYDILPEQVSTALTATQKELQDLEAKGLLRGKLTAAQQFACISGTNDLKELVK 85
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
AIF+QE +PE L +K +Y+ +D + NTILSSSTS+FLPS+ S +++ +V+HP
Sbjct: 86 GAIFVQECIPERLDLKKALYKQLDAVVGPNTILSSSTSTFLPSLFSADLKNKANVLVSHP 145
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNEC 254
VNPPY++PLVEIVPA WT + +TR +M EIG KPVTL+ EI GFALNRIQ+A+LNE
Sbjct: 146 VNPPYYVPLVEIVPAPWTKPEWVKKTRALMEEIGQKPVTLSREIEGFALNRIQYAILNET 205
Query: 255 YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV G+L+ KDID VMS GLG RYAFLGPLET HLN+
Sbjct: 206 WRLVEAGILNVKDIDSVMSNGLGPRYAFLGPLETAHLNA 244
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195351396|ref|XP_002042220.1| GM13412 [Drosophila sechellia] gi|194124063|gb|EDW46106.1| GM13412 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 133/279 (47%), Positives = 173/279 (62%), Gaps = 45/279 (16%)
Query: 17 GIIG--LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
GI+G LIG++W+M+FAS G
Sbjct: 12 GIVGSGLIGRSWSMLFASVG---------------------------------------- 31
Query: 75 HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 134
Y+V LYD+L EQ+ A Q LQD KG L+G L+ +QF ISGT L+E ++
Sbjct: 32 ---YQVVLYDILPEQVSTALTATQKELQDLEAKGLLRGKLTAAQQFACISGTNDLKELVQ 88
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
AIF+QE +PE L +K +Y+ +D + NTILSSSTS+FLPS+ S +++ +V+HP
Sbjct: 89 GAIFVQECIPERLDLKKALYKQLDAVVGPNTILSSSTSTFLPSLFSADLKNKANVLVSHP 148
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNEC 254
VNPPY++PLVEIVPA WT + +TR +M EIG KPVTL+ EI GFALNRIQ+A+LNE
Sbjct: 149 VNPPYYVPLVEIVPAPWTKPEWVKKTRALMEEIGQKPVTLSREIEGFALNRIQYAILNET 208
Query: 255 YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV G+L+ KDID VMS GLG RYAFLGPLET HLN+
Sbjct: 209 WRLVEAGILNVKDIDSVMSNGLGPRYAFLGPLETAHLNA 247
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312384823|gb|EFR29456.1| hypothetical protein AND_01493 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 173/274 (63%), Gaps = 43/274 (15%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
GLIG++WAM+FA G Y+
Sbjct: 5 GLIGRSWAMLFAGVG-------------------------------------------YQ 21
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
V++YD++ + + A + L ++G L+G+L+ EQF ISGT L+ + A+++
Sbjct: 22 VTIYDIIPDIVSKALVETERELNKLEKEGLLRGALTAAEQFACISGTDNLKAAITGALYV 81
Query: 140 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY 199
QE VPE L IK ++Y +D F+ +TIL+SSTS+F+PS+ SE HRSQ +VAHPVNPPY
Sbjct: 82 QECVPERLDIKKKLYGEVDGFVGPDTILASSTSTFMPSLFSEDLKHRSQVLVAHPVNPPY 141
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
++PLVEIVPA WT + RE+MTEIG KPVTL+ +I GFALNRIQ+A+LNE + LV
Sbjct: 142 YVPLVEIVPAPWTKPEFTAKARELMTEIGQKPVTLSRQIEGFALNRIQYAILNETWRLVS 201
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
DG+LS KDID VMSEGLG+RYAFLGPLET HLN+
Sbjct: 202 DGILSVKDIDVVMSEGLGMRYAFLGPLETAHLNA 235
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194770170|ref|XP_001967170.1| GF19071 [Drosophila ananassae] gi|190619290|gb|EDV34814.1| GF19071 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 131/279 (46%), Positives = 176/279 (63%), Gaps = 45/279 (16%)
Query: 17 GIIG--LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
GI+G LIG++W+M+FAS G
Sbjct: 9 GIVGSGLIGRSWSMLFASVG---------------------------------------- 28
Query: 75 HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 134
Y+V LYD+L EQ+ A + Q LQ+ KG L+G ++ +Q+ ISGT L+E +
Sbjct: 29 ---YQVVLYDILPEQVSTALSLTQKELQNLESKGLLRGKMTAAQQYSCISGTNDLKELAK 85
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
AIFIQE +PE L +K +Y+ +D + +NTILSSSTS+FLPS+ S +++ +V+HP
Sbjct: 86 GAIFIQECIPERLDLKKALYKQLDEVVGTNTILSSSTSTFLPSLFSADLKNKANVLVSHP 145
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNEC 254
VNPPY++PLVEIVPA WT + +TR +M EIG KPVTL+ EI GFALNRIQ+A+LNE
Sbjct: 146 VNPPYYVPLVEIVPAPWTKPEWVQKTRALMDEIGQKPVTLSREIEGFALNRIQYAILNET 205
Query: 255 YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV G+L+ KDID VMS+GLG+RYAFLGPLET HLN+
Sbjct: 206 WRLVEAGILNVKDIDSVMSDGLGMRYAFLGPLETAHLNA 244
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195403081|ref|XP_002060123.1| GJ18534 [Drosophila virilis] gi|194140967|gb|EDW57393.1| GJ18534 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 263 bits (673), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 131/279 (46%), Positives = 177/279 (63%), Gaps = 45/279 (16%)
Query: 17 GIIG--LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
GI+G LIG++W+M+FAS G
Sbjct: 11 GIVGSGLIGRSWSMLFASVG---------------------------------------- 30
Query: 75 HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 134
Y+V LYD+L EQ++ A Q L + KG L+G L+ +QF ISGT +++ +
Sbjct: 31 ---YQVVLYDILPEQVQGALKATQKELIELEGKGLLRGKLNAAQQFSCISGTNDIKQLAK 87
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
AIFIQE +PE L+ K ++++ +D + SNTILSSSTS+FLPS+ + + H+ +V+HP
Sbjct: 88 GAIFIQECIPEKLEWKQELFKKLDDVVDSNTILSSSTSTFLPSLFTANLKHKHNTVVSHP 147
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNEC 254
VNPPY++PLVEIVPA WT V+ +TR +M EIG KPVTL+ EI GFALNRIQ+A+LNE
Sbjct: 148 VNPPYYVPLVEIVPAPWTKPEVVQKTRALMDEIGQKPVTLSREIEGFALNRIQYAILNET 207
Query: 255 YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV G+L+ KDID VMS+GLG+RYAFLGPLET HLN+
Sbjct: 208 WRLVEAGILNVKDIDSVMSDGLGMRYAFLGPLETAHLNA 246
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195448304|ref|XP_002071598.1| GK25055 [Drosophila willistoni] gi|194167683|gb|EDW82584.1| GK25055 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 263 bits (672), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 133/279 (47%), Positives = 173/279 (62%), Gaps = 45/279 (16%)
Query: 17 GIIG--LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
GI+G LIG++W+M+FAS G
Sbjct: 10 GIVGSGLIGRSWSMLFASVG---------------------------------------- 29
Query: 75 HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 134
Y+V LYD+L EQ+ A Q L D KG L+G L+ +QF ISGT ++E ++
Sbjct: 30 ---YQVVLYDILPEQVATALKQTQKELLDMESKGLLRGKLNAVQQFSCISGTNDIKELVK 86
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
AI IQE +PE L +K +Y+ +D + NTILSSSTS+FLPS+ S H+ +V+HP
Sbjct: 87 GAILIQECIPERLDLKKALYKQLDDVVDDNTILSSSTSTFLPSLFSADLKHKHNVVVSHP 146
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNEC 254
VNPPY++PLVEIVPA WT ++ +TR +MTEIG KPVTL+ EI GFALNRIQ+A+LNE
Sbjct: 147 VNPPYYVPLVEIVPAPWTKPELVQKTRALMTEIGQKPVTLSREIEGFALNRIQYAILNET 206
Query: 255 YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV G+L+ KDID VMS+GLG RYAFLGPLET HLN+
Sbjct: 207 WRLVEAGILNVKDIDSVMSDGLGPRYAFLGPLETAHLNA 245
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194893905|ref|XP_001977964.1| GG19334 [Drosophila erecta] gi|190649613|gb|EDV46891.1| GG19334 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 132/279 (47%), Positives = 172/279 (61%), Gaps = 45/279 (16%)
Query: 17 GIIG--LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
GI+G LIG++W+M+FAS G
Sbjct: 9 GIVGSGLIGRSWSMLFASVG---------------------------------------- 28
Query: 75 HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 134
Y+V LYD+L EQ+ A Q L D KG L+G L+ +QF ISGT L+E ++
Sbjct: 29 ---YQVVLYDILPEQVSTALTATQKELLDLEAKGLLRGKLTAAQQFACISGTNDLKELVK 85
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
AIF+QE +PE L +K +Y+ +D + NTILSSSTS+FLPS+ S +++ +V+HP
Sbjct: 86 GAIFVQECIPERLDLKKALYKQLDAVVGPNTILSSSTSTFLPSLFSADLKNKANVLVSHP 145
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNEC 254
VNPPY++PLVEIVPA WT + +TR +M EIG KPVTL+ EI GFALNRIQ+A+LNE
Sbjct: 146 VNPPYYVPLVEIVPAPWTKPEWVKKTRALMEEIGQKPVTLSREIEGFALNRIQYAILNET 205
Query: 255 YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV G+L+ KDID VMS GLG RYAFLGPLET HLN+
Sbjct: 206 WRLVEAGILNVKDIDSVMSNGLGPRYAFLGPLETAHLNA 244
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 294 | ||||||
| FB|FBgn0030737 | 315 | CG9914 [Drosophila melanogaste | 0.748 | 0.698 | 0.495 | 1.6e-54 | |
| FB|FBgn0033949 | 315 | CG10131 [Drosophila melanogast | 0.748 | 0.698 | 0.472 | 9.2e-52 | |
| UNIPROTKB|Q9Y2S2 | 319 | CRYL1 "Lambda-crystallin homol | 0.748 | 0.689 | 0.45 | 8.5e-49 | |
| UNIPROTKB|Q5RDZ2 | 319 | CRYL1 "Lambda-crystallin homol | 0.748 | 0.689 | 0.45 | 8.5e-49 | |
| UNIPROTKB|P14755 | 319 | CRYL1 "Lambda-crystallin" [Ory | 0.748 | 0.689 | 0.445 | 2.6e-47 | |
| UNIPROTKB|E2R471 | 387 | CRYL1 "Uncharacterized protein | 0.748 | 0.568 | 0.436 | 3.3e-47 | |
| MGI|MGI:1915881 | 319 | Cryl1 "crystallin, lambda 1" [ | 0.748 | 0.689 | 0.445 | 5.4e-47 | |
| RGD|631427 | 319 | Cryl1 "crystallin, lambda 1" [ | 0.748 | 0.689 | 0.440 | 6.9e-47 | |
| UNIPROTKB|Q8SQ26 | 322 | CRYL1 "Lambda-crystallin homol | 0.748 | 0.683 | 0.440 | 1.8e-46 | |
| UNIPROTKB|F1NPU2 | 321 | CRYL1 "Uncharacterized protein | 0.775 | 0.710 | 0.419 | 1.8e-46 |
| FB|FBgn0030737 CG9914 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 109/220 (49%), Positives = 142/220 (64%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A GY+V LYD+L EQ+ A Q LQD KG L+G L+ +QF ISGT L+E +
Sbjct: 25 ASVGYQVVLYDILPEQVSTALTATQKELQDLEAKGLLRGKLTAAQQFACISGTNDLKELV 84
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAH 193
+ AIF+QE +PE L +K +Y+ +D + +++ +V+H
Sbjct: 85 KGAIFVQECIPERLDLKKALYKQLDAVVGPNTILSSSTSTFLPSLFSADLKNKANVLVSH 144
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
PVNPPY++PLVEIVPA WT + +TR +M EIG KPVTL+ EI GFALNRIQ+A+LNE
Sbjct: 145 PVNPPYYVPLVEIVPAPWTKPEWVKKTRALMEEIGQKPVTLSREIEGFALNRIQYAILNE 204
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV G+L+ KDID VMS GLG RYAFLGPLET HLN+
Sbjct: 205 TWRLVEAGILNVKDIDSVMSNGLGPRYAFLGPLETAHLNA 244
|
|
| FB|FBgn0033949 CG10131 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 104/220 (47%), Positives = 136/220 (61%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A AGY+V LYD+L Q+ A + L ++ L+G++ EQF LI T L E
Sbjct: 23 AAAGYRVQLYDILESQLATALQELDKDLHRLEEQSALRGNIRASEQFALIGVTTRLEELT 82
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAH 193
+A+ IQE VPE+L +K +Y +D + E R Q +VAH
Sbjct: 83 REAVHIQECVPEVLHLKKSLYSQLDELLEEQTVVASSTSTFMPSLYSEGLQKRQQMLVAH 142
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
P+NPPYFIPLVEIVPA WTS + RTR++M +G +PVTL EI+GFA NRIQ+A+LNE
Sbjct: 143 PLNPPYFIPLVEIVPAPWTSPSAVERTRDLMLSLGQRPVTLKREIQGFATNRIQYAILNE 202
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV G+LS D+DRV+S+GLGLRYA LG LET HLN+
Sbjct: 203 VWRLVGSGILSVADVDRVLSQGLGLRYALLGSLETAHLNA 242
|
|
| UNIPROTKB|Q9Y2S2 CRYL1 "Lambda-crystallin homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 99/220 (45%), Positives = 140/220 (63%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A G++V LYD+ +QI NA I+ ++ Q G LKGSLS EEQ LISG P ++E +
Sbjct: 26 ASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSLISGCPNIQEAV 85
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAH 193
E A+ IQE VPE L++K +++ +D + H Q IVAH
Sbjct: 86 EGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAH 145
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
PVNPPY+IPLVE+VP T+ + RT +M +IG P+ + E+ GF LNR+Q+A+++E
Sbjct: 146 PVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISE 205
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV +G++S D+D VMSEGLG+RYAF+GPLET+HLN+
Sbjct: 206 AWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNA 245
|
|
| UNIPROTKB|Q5RDZ2 CRYL1 "Lambda-crystallin homolog" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 99/220 (45%), Positives = 140/220 (63%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A G++V LYD+ +QI NA I+ ++ Q G LKGSLS EEQ LISG P ++E +
Sbjct: 26 ASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSLISGCPNIQEAV 85
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAH 193
E A+ IQE VPE L++K +++ +D + H Q IVAH
Sbjct: 86 EGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAH 145
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
PVNPPY+IPLVE+VP T+ + RT +M +IG P+ + E+ GF LNR+Q+A+++E
Sbjct: 146 PVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISE 205
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV +G++S D+D VMSEGLG+RYAF+GPLET+HLN+
Sbjct: 206 AWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNA 245
|
|
| UNIPROTKB|P14755 CRYL1 "Lambda-crystallin" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 98/220 (44%), Positives = 133/220 (60%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A G++V LYD+ QI A I+ ++ Q G LKGSLS EEQ LIS L E +
Sbjct: 26 ASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV 85
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAH 193
E + IQE VPE L +K +++ +D + H Q IVAH
Sbjct: 86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAH 145
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
PVNPPY+IPLVE+VP TS + RT +M +IG PV + EI GF LNR+Q+A+++E
Sbjct: 146 PVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISE 205
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV +G++S D+D VMS+GLG+RYAF+GPLET+HLN+
Sbjct: 206 AWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNA 245
|
|
| UNIPROTKB|E2R471 CRYL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 96/220 (43%), Positives = 137/220 (62%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A G+KV LYD+ +Q+ NA TI+ ++ Q G L+GSLS EEQ LISG ++ +
Sbjct: 94 ASGGFKVKLYDIEQQQVTNALETIRKEMKILEQSGSLRGSLSSEEQLSLISGCSNIQAAV 153
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAH 193
E A IQE VPE L++K +++ +D + H Q +V H
Sbjct: 154 EGAGHIQECVPENLELKKKIFAQLDQIVDDKVVLSSSTSCLLPSKLFAGLAHVKQCLVVH 213
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
PVNPPY++PLVE+VP T+ + RT +M +IG PV + EI GFALNR+Q+A++ E
Sbjct: 214 PVNPPYYVPLVELVPHPETAPATMDRTYALMQKIGQSPVRIMKEIEGFALNRLQYAIIGE 273
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV +G++S D+D VMS+GLG+RYAF+GPLET+HLN+
Sbjct: 274 AWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNA 313
|
|
| MGI|MGI:1915881 Cryl1 "crystallin, lambda 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 98/220 (44%), Positives = 136/220 (61%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A G+KV LYD+ +QI +A I+ ++ Q G LKGSLS E Q LISG L E +
Sbjct: 26 ASGGFKVKLYDIEQQQITDALENIRKEMKSLEQSGSLKGSLSAERQLSLISGCGNLAEAV 85
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAH 193
E A+ IQE VPE L++K +++ +D + H Q IVAH
Sbjct: 86 EGAVHIQECVPENLELKKKIFAQLDRIVDDRVILSSSSSCLLPSKLFSGLAHVKQCIVAH 145
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
PVNPPY++PLVE+VP T+ + RT +M +IG PV + EI GF LNR+Q+AV++E
Sbjct: 146 PVNPPYYVPLVELVPHPETAPATMDRTYALMKKIGQSPVRVLKEIDGFVLNRLQYAVISE 205
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV + ++S D+D VMS+GLG+RYAF+GPLET+HLN+
Sbjct: 206 AWRLVEEEIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNA 245
|
|
| RGD|631427 Cryl1 "crystallin, lambda 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
Identities = 97/220 (44%), Positives = 137/220 (62%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A G+KV LYD+ +QI NA +I+ ++ Q G LKGSL E+Q LISG L E +
Sbjct: 26 ASGGFKVKLYDIEQQQITNALESIRKEMKSLEQSGSLKGSLGAEQQLSLISGCGNLAEAV 85
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAH 193
E A+ IQE VPE L++K +++ +D + H Q IVAH
Sbjct: 86 EGAMHIQECVPENLELKKKIFAQLDRIVDDQVILSSSSSCLLPSKLFTGLAHVKQCIVAH 145
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
PVNPPY++PLVE+VP T+ + RT +M +I PV + EI GF LNR+Q+A+++E
Sbjct: 146 PVNPPYYVPLVELVPHPETAPATMDRTYALMKKIRQTPVRVLKEIDGFVLNRLQYAIISE 205
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV +G++S D+D VMS+GLG+RYAF+GPLET+HLN+
Sbjct: 206 AWRLVEEGIVSPNDLDLVMSDGLGMRYAFIGPLETMHLNA 245
|
|
| UNIPROTKB|Q8SQ26 CRYL1 "Lambda-crystallin homolog" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 97/220 (44%), Positives = 135/220 (61%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A G++V LYD+ +Q+ A +TI+ ++ Q G LKGSL EEQ LISG LRE +
Sbjct: 29 ASGGFRVKLYDIEQQQVTGALDTIRKEMKLLEQSGALKGSLGAEEQLALISGCSDLREAV 88
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAH 193
E + IQE VPE L++K Q++ +D + H Q +VAH
Sbjct: 89 EGTVHIQECVPENLELKQQLFAQLDQIVDGNVVLSSSSSCLLPSKLFAGLVHVRQCLVAH 148
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
PVNPPY +PLVE+VP T+ + RT +M +IG PV + E+ GFALNR+Q+A++ E
Sbjct: 149 PVNPPYHVPLVELVPHPETAPATMARTYALMRQIGQSPVRILKEVDGFALNRLQYALIGE 208
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+ LV ++S D+D VMS+GLGLRYAF+GPLET+HLN+
Sbjct: 209 AWRLVEARIVSPGDLDLVMSDGLGLRYAFIGPLETMHLNA 248
|
|
| UNIPROTKB|F1NPU2 CRYL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 96/229 (41%), Positives = 140/229 (61%)
Query: 65 GCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLIS 124
GC ++ A G+KV LYD+ +Q+ A ++ +++ + G LKG+LS E+Q LIS
Sbjct: 20 GC-SWAMVFAAGGFKVKLYDIAQQQLTTALENVRKQMKELEESGFLKGTLSAEKQLALIS 78
Query: 125 GTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHST 184
++ +E A FIQE PE L++K +++ +D+ +
Sbjct: 79 VCTDMKAAVEGATFIQECTPENLELKKKIFSQLDLIVDDSVILSSSTSCLLPSKLFTGLK 138
Query: 185 HRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALN 244
H Q IV+HPVNPPYF+PLVEIVP T V +T +M ++G PV L EI GF LN
Sbjct: 139 HVKQCIVSHPVNPPYFVPLVEIVPHPETDPSVTEKTYALMKKVGQSPVKLNREIEGFVLN 198
Query: 245 RIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
R+Q+AV++E + LV +GV+S D+D VMS+GLG+RYAF+GPLET+HLN+
Sbjct: 199 RLQYAVISEAWRLVGEGVISPTDLDVVMSDGLGMRYAFIGPLETMHLNA 247
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9RVG1 | HBD_DEIRA | 1, ., 1, ., 1, ., 1, 5, 7 | 0.3148 | 0.6904 | 0.7302 | yes | N/A |
| Q8SQ26 | CRYL1_PIG | 1, ., 1, ., 1, ., 4, 5 | 0.4233 | 0.7857 | 0.7173 | yes | N/A |
| Q9Y2S2 | CRYL1_HUMAN | 1, ., 1, ., 1, ., 4, 5 | 0.4270 | 0.7857 | 0.7241 | yes | N/A |
| Q4ZSC0 | LCDH_PSEU2 | 1, ., 1, ., 1, ., 1, 0, 8 | 0.3348 | 0.7142 | 0.6603 | yes | N/A |
| D7B2S5 | LCDH_NOCDD | 1, ., 1, ., 1, ., 1, 0, 8 | 0.3023 | 0.7142 | 0.6382 | yes | N/A |
| Q8SPX7 | CRYL1_BOVIN | 1, ., 1, ., 1, ., 4, 5 | 0.4111 | 0.8163 | 0.7476 | yes | N/A |
| B1VLT7 | LCDH_STRGG | 1, ., 1, ., 1, ., 1, 0, 8 | 0.3069 | 0.7142 | 0.6268 | yes | N/A |
| Q5RDZ2 | CRYL1_PONAB | 1, ., 1, ., 1, ., 4, 5 | 0.4270 | 0.7857 | 0.7241 | yes | N/A |
| P14755 | CRYL1_RABIT | 1, ., 1, ., 1, ., 4, 5 | 0.4197 | 0.7857 | 0.7241 | yes | N/A |
| Q4V182 | LCDH_BACCZ | 1, ., 1, ., 1, ., 1, 0, 8 | 0.3488 | 0.7142 | 0.6441 | yes | N/A |
| Q99KP3 | CRYL1_MOUSE | 1, ., 1, ., 1, ., 4, 5 | 0.4265 | 0.8231 | 0.7586 | yes | N/A |
| Q811X6 | CRYL1_RAT | 1, ., 1, ., 1, ., 4, 5 | 0.4230 | 0.8231 | 0.7586 | yes | N/A |
| P77851 | HBD_THETC | 1, ., 1, ., 1, ., 1, 5, 7 | 0.3098 | 0.7040 | 0.7366 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.766 |
| 4th Layer | 1.1.1.45 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 294 | |||
| PRK06129 | 308 | PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas | 8e-85 | |
| COG1250 | 307 | COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li | 2e-60 | |
| pfam02737 | 180 | pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas | 3e-45 | |
| PRK06130 | 311 | PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge | 5e-45 | |
| PRK07531 | 495 | PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA | 5e-45 | |
| PRK08269 | 314 | PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge | 2e-38 | |
| PRK07066 | 321 | PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge | 2e-35 | |
| PRK09260 | 288 | PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge | 3e-28 | |
| PLN02545 | 295 | PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge | 3e-28 | |
| PRK08293 | 287 | PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge | 9e-27 | |
| PRK06035 | 291 | PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas | 2e-21 | |
| PRK05808 | 282 | PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge | 3e-20 | |
| PRK07530 | 292 | PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge | 2e-17 | |
| pfam00725 | 97 | pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, | 2e-16 | |
| PRK07819 | 286 | PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge | 1e-15 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 2e-15 | |
| PRK08268 | 507 | PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena | 7e-15 | |
| TIGR02279 | 503 | TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy | 5e-14 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 9e-13 | |
| PRK11154 | 708 | PRK11154, fadJ, multifunctional fatty acid oxidati | 1e-11 | |
| PRK11730 | 715 | PRK11730, fadB, multifunctional fatty acid oxidati | 5e-11 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 2e-06 |
| >gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 8e-85
Identities = 103/278 (37%), Positives = 141/278 (50%), Gaps = 46/278 (16%)
Query: 17 GIIG--LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
IIG LIG+AWA++FA AG++V L+D A I L+D L G
Sbjct: 6 AIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGE---- 61
Query: 75 HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 134
+P+ I T L + +
Sbjct: 62 ----------------------------------------APDAVLARIRVTDSLADAVA 81
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
DA ++QES PE L++K ++ +D + IL+SSTS+ L S +EH R + +VAHP
Sbjct: 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHP 141
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNEC 254
+NPPY IP+VE+VPA WT+ + R + G PV L EI GF LNR+Q A+L E
Sbjct: 142 INPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREA 201
Query: 255 YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLN 292
+ LV DGV S DID V+ +GLGLR++F+GP ETI LN
Sbjct: 202 FRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLN 239
|
Length = 308 |
| >gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 193 bits (494), Expect = 2e-60
Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 6/218 (2%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A AGY V L D+ E +E A I+ L+ +KG L + I+ T L L
Sbjct: 23 ALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE-EADAALARITPTTDL-AAL 80
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAH 193
+DA + E+V E L++K QV+ ++ + IL+S+TSS + L+E +FI H
Sbjct: 81 KDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLH 140
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
NP +PLVE++ TS+ + R E +IG PV + ++ GF +NR+ A+LNE
Sbjct: 141 FFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPV-VVKDVPGFIVNRLLAALLNE 199
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
L+ +GV + ++ID M +GLGL GP E L
Sbjct: 200 AIRLLEEGVATPEEIDAAMRQGLGLPM---GPFELADL 234
|
Length = 307 |
| >gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 3e-45
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 2/159 (1%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A AG +V L D+ E +E A+ I+ +L +KG + + IS T L +
Sbjct: 19 ARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEE-DADAVLARISFTTDLAD-A 76
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAH 193
DA + E+VPE L +K +++ +D + IL+S+TSS + L+ + +FI H
Sbjct: 77 VDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSITELAAATKRPERFIGLH 136
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 232
NPP +PLVE+V TS + + +IG PV
Sbjct: 137 FFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPV 175
|
This family also includes lambda crystallin. Length = 180 |
| >gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 5e-45
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 6/219 (2%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A G +V L DV+ +E A+ I+ G G I L +
Sbjct: 24 ARKGLQVVLIDVMEGALERARGVIER------ALGVYAPLGIASAGMGRIRMEAGLAAAV 77
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAH 193
A + E+VPE L++K V+ +D +TI +++TS + +++ T +F+ H
Sbjct: 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTH 137
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
P IPLVE+V TS + + T ++ IG +PV + +I GF NRIQ A+ E
Sbjct: 138 FFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALARE 197
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLN 292
L+ GV SA+DID V+ LG+R A GPLE +N
Sbjct: 198 AISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMN 236
|
Length = 311 |
| >gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 5e-45
Identities = 84/214 (39%), Positives = 116/214 (54%), Gaps = 7/214 (3%)
Query: 76 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQK-GCLKGSLSPEEQFGLISGTPVLRECLE 134
AG V+++D E A+ I L + + L + P E G ++ L E +
Sbjct: 26 AGIDVAVFDPHPE----AERIIGEVLANAERAYAMLTDAPLPPE--GRLTFCASLAEAVA 79
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
A +IQESVPE L +K +V ID + ++ SSTS FLPS L E TH + VAHP
Sbjct: 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHP 139
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNEC 254
NP Y +PLVE+V TS I R +EI+ EIGMKPV + EI F +R+ A+ E
Sbjct: 140 YNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREA 199
Query: 255 YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLET 288
LV DG+ + ++ID V+ GLR+A +G ET
Sbjct: 200 LWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFET 233
|
Length = 495 |
| >gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 2e-38
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ L DA + E+VPE+L K + R + + ++ I++S+TS+FL + L H H +F+
Sbjct: 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFL 134
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
AH +NP Y +PLVE+ P+ T V+ R ++ IG PV G+ + RIQ
Sbjct: 135 NAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPS-PGYIVPRIQALA 193
Query: 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETI 289
+NE +V +GV SA+DID+ + G GLR+A LG LE I
Sbjct: 194 MNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFI 232
|
Length = 314 |
| >gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-35
Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 8/182 (4%)
Query: 118 EQFGLISGT--------PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169
E+ GL G + C+ DA FIQES PE +K +++ I + I++S
Sbjct: 58 ERQGLAPGASPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIAS 117
Query: 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGM 229
STS LP+ +TH + +V HP NP Y +PLVE++ T+ + I +GM
Sbjct: 118 STSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGM 177
Query: 230 KPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETI 289
+P+ + E+ GF +R+ A+ E HLV++GV + +ID + G G+R++F+G T
Sbjct: 178 RPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTY 237
Query: 290 HL 291
L
Sbjct: 238 TL 239
|
Length = 321 |
| >gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-28
Identities = 59/217 (27%), Positives = 114/217 (52%), Gaps = 11/217 (5%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV---LR 130
A +G++ +L D+ EQ+E+A+ I + G +G L+ + ++ L+
Sbjct: 21 AVSGFQTTLVDIKQEQLESAQQEIASIFEQ----GVARGKLTEAARQAALARLSYSLDLK 76
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ DA + E+VPE L++K V+ D + ++++TS+ P+ ++ + + I
Sbjct: 77 AAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVI 136
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H NP + + LVE++ TS+ + +E+ ++G K + E GF +RI V
Sbjct: 137 AMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMG-KETVVVNEFPGFVTSRISALV 195
Query: 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
NE ++++ +GV +A+DID+ + LGL + +GPLE
Sbjct: 196 GNEAFYMLQEGVATAEDIDKAIR--LGLNFP-MGPLE 229
|
Length = 288 |
| >gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-28
Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 12/217 (5%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---QFGLISGTPVLR 130
A AG V L D + ++I +L + KG +S EE G I T L
Sbjct: 24 AAAGMDVWLLDSDPAALSRGLDSISSSLA----RLVKKGKMSQEEADATLGRIRCTTNLE 79
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
E L DA FI E++ E +K +++ +D + IL+S+TSS + L+ + Q I
Sbjct: 80 E-LRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVI 138
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +NPP + LVEI+ A TS+ V T+ + G K V + + GF +NRI +
Sbjct: 139 GMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFG-KTVVCSQDYPGFIVNRILMPM 197
Query: 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
+NE ++ ++ GV S +DID M G +GPL
Sbjct: 198 INEAFYALYTGVASKEDIDTGMKLGTNHP---MGPLH 231
|
Length = 295 |
| >gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 9e-27
Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 6/224 (2%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A G+ V++YD+ E +E AK I Y + E I+ T L E +
Sbjct: 23 AFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAH 193
+DA + E+VPE +IK Y + TI ++++S+ LPS +E + +F+ H
Sbjct: 83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALH 142
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
N + EI+ T V IGM P+ L E G+ LN + L+
Sbjct: 143 FANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSA 202
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGP---LETIHLNSA 294
L GV + ID+ G A +GP L+ + L++A
Sbjct: 203 ALALWAKGVADPETIDKTWMIATG---APMGPFGILDIVGLDTA 243
|
Length = 287 |
| >gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 2e-21
Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 13/223 (5%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQ---HTLQDYHQKGCLKGSLSPEEQFGLIS--GTPV 128
A GY V++ DV E ++NA I+ + L++ +KG +S +E +++ T
Sbjct: 23 ARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKG----KMSEDEAKAIMARIRTST 78
Query: 129 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ 188
E L DA FI E+VPE L +K +V+ ++ +S TI++S+TS + + ++ + +
Sbjct: 79 SYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDR 138
Query: 189 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248
FI H NP + L+E+V AA TSE T E+ +IG P+ + ++ GF R
Sbjct: 139 FIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPIEV-ADVPGFFTTRFIE 197
Query: 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
L E G+ + KDID + G +GP E + +
Sbjct: 198 GWLLEAIRSFEIGIATIKDIDEMCKLAFGFP---MGPFELMDI 237
|
Length = 291 |
| >gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 3e-20
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 14/217 (6%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ---FGLISGTPVLR 130
A AGY V + D+ ++ TI +L + KG ++ ++ I+GT L
Sbjct: 23 AVAGYDVVMVDISDAAVDRGLATITKSLD----RLVKKGKMTEADKEAALARITGTTDL- 77
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR-SQF 189
+ L+DA + E+ E + +K +++ +D IL+++TSS L +T R +
Sbjct: 78 DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS-LSITELAAATKRPDKV 136
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
I H NP + LVEI+ TS+ + +IG PV + GF +NRI
Sbjct: 137 IGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVK-NAPGFVVNRILIP 195
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPL 286
++NE ++ +GV +A+DID M LG + +GPL
Sbjct: 196 MINEAIFVLAEGVATAEDIDEGMK--LGCNHP-IGPL 229
|
Length = 282 |
| >gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-17
Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 14/218 (6%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ---FGLISGTPVLR 130
A AGY V L DV ++++E TI L + KG +S E + IS L
Sbjct: 24 ALAGYDVLLNDVSADRLEAGLATINGNL----ARQVAKGKISEEARAAALARISTATDLE 79
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ-F 189
+ L D + E+ E +K +++ + + IL+++TSS + L+ +T R + F
Sbjct: 80 D-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS-ATDRPERF 137
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
I H +NP + LVE++ T E +E +T++G K +T+ + F +NRI
Sbjct: 138 IGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLG-KTITVAEDFPAFIVNRILLP 196
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
++NE + +++GV S + ID M LG + +GPLE
Sbjct: 197 MINEAIYTLYEGVGSVEAIDTAMK--LGANHP-MGPLE 231
|
Length = 292 |
| >gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-16
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 240 GFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLN 292
GF +NR+ +LNE LV +GV + +DID M GLGL + + L+
Sbjct: 1 GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLD 53
|
This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97 |
| >gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-15
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 14/218 (6%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ---FGLISGTPVLR 130
A AG V +++ E +N I+ +L+ + +G L+ E+ + T L
Sbjct: 25 ARAGVDVLVFETTEELATAGRNRIEKSLE----RAVSRGKLTERERDAALARLRFTTDLG 80
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAID-IFMSSNTILSSSTSSFLPSVLSEHSTHRSQF 189
+ D + E+V E +K +++ +D + + +L+S+TSS +P + +T R
Sbjct: 81 D-FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS-IPIMKLAAATKRPGR 138
Query: 190 IVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248
++ H NP +PLVE+VP TSE + R E +++ K V + GF +N +
Sbjct: 139 VLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLV 198
Query: 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPL 286
L +V G +A+DID+ M LG + +GPL
Sbjct: 199 PYLLSAIRMVESGFATAEDIDKAMV--LGCAHP-MGPL 233
|
Length = 286 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-15
Identities = 62/215 (28%), Positives = 110/215 (51%), Gaps = 16/215 (7%)
Query: 76 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---QFGLISGTPVLREC 132
AG V + D+ + I NA +++ KG + ++P E Q LI+GT R
Sbjct: 327 AGIPVRIKDINPQGINNA---LKYAW-KLLDKGVKRRHMTPAERDNQMALITGTTDYRG- 381
Query: 133 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 192
+D + E+V E L +KHQ+ + I+ +++TI +S+TSS ++ ++ I
Sbjct: 382 FKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGL 441
Query: 193 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLN 252
H +P +PLVE++P A TSE+ I T + + G P+ + + GF +NRI +N
Sbjct: 442 HYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKA-GFYVNRILAPYMN 500
Query: 253 ECYHLVHDGVLSAKDIDRVMSEGLGLRYAF-LGPL 286
E L+ +G + ID+ + +++ F +GP+
Sbjct: 501 EAARLLLEGE-PVEHIDKAL-----VKFGFPVGPI 529
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 7e-15
Identities = 61/219 (27%), Positives = 96/219 (43%), Gaps = 16/219 (7%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE-QFGLISGTPV--LR 130
A AG+ V LYD + A++ I L K KG L+ E+ L PV L
Sbjct: 27 AQAGHTVLLYDARAGAAAAARDGIAARLA----KLVEKGKLTAEQADAALARLRPVEALA 82
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ L D + E++ E L +K ++ ++ +S + IL+++TSS S+ + + +
Sbjct: 83 D-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSL--SITAIAAALKHPER 139
Query: 191 VA--HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248
VA H NP + LVE+V T V + G PV + GF +NR
Sbjct: 140 VAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPV-RAKDTPGFIVNRAAR 198
Query: 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
E ++ +GV ID ++ E G R +GP E
Sbjct: 199 PYYTEALRVLEEGVADPATIDAILREAAGFR---MGPFE 234
|
Length = 507 |
| >gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 5e-14
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 8/219 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR-EC 132
A AG++V LYD+ +E + A I+ L KG L E + L PV
Sbjct: 25 ASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE---ECERTLKRLIPVTDLHA 81
Query: 133 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 192
L DA + E++ E L++K ++ ++ ++TI++S+TSS + ++ +
Sbjct: 82 LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGL 141
Query: 193 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLN 252
H NP + LVE+V T+ V + E G +PV GF +NR+
Sbjct: 142 HFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVH-CHSTPGFIVNRVARPYYA 200
Query: 253 ECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
E + + V + +D + +G G +GP E L
Sbjct: 201 EALRALEEQVAAPAVLDAALRDGAGFP---MGPFELTDL 236
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 9e-13
Identities = 44/169 (26%), Positives = 85/169 (50%), Gaps = 4/169 (2%)
Query: 111 KGSLSPEEQFGLISG-TPVLREC-LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168
+G ++P + G+++G TP L ++ + E+V E ++K V ++ + + IL+
Sbjct: 366 RGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILA 425
Query: 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIG 228
S+TS+ S+L++ F H NP + +PLVE++ +S+ I +++G
Sbjct: 426 SNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMG 485
Query: 229 MKPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLG 277
P+ + + GF +NR+ F L+ DG + ID+VM + G
Sbjct: 486 KTPI-VVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVR-IDKVMEKQFG 532
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-11
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 12/205 (5%)
Query: 70 SLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---QFGLISGT 126
++ AG V + D+ + I +A L K + L P E Q LISGT
Sbjct: 326 YVTATKAGLPVRIKDINPQGINHALKYSWDLLD----KKVKRRHLKPSERDKQMALISGT 381
Query: 127 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTH 185
R + A + E+V E L +K Q+ ++ + +TI +S+TSS LP ++ +
Sbjct: 382 TDYRG-FKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS-LPIGQIAAAAAR 439
Query: 186 RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR 245
Q I H +P +PLVE++P A TS I T + + G P+ + GF +NR
Sbjct: 440 PEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGA-GFYVNR 498
Query: 246 IQFAVLNECYHLVHDGVLSAKDIDR 270
I +NE L+ +G + ID
Sbjct: 499 ILAPYINEAARLLLEGE-PIEHIDA 522
|
Length = 708 |
| >gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 5e-11
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 6/170 (3%)
Query: 111 KGSLSPEEQFGLISG-TPVLR-ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168
+G + + G++S P L E + E+V E ++K V ++ + +TIL+
Sbjct: 366 RGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILA 425
Query: 169 SSTSSFLPSVLSEHSTHRSQ-FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEI 227
S+TS+ S+L++ + R + F H NP + +PLVE++ TS+ I +++
Sbjct: 426 SNTSTISISLLAK-ALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKM 484
Query: 228 GMKPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLG 277
G P+ + + GF +NR+ F L+ DG + ID+VM + G
Sbjct: 485 GKTPI-VVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQ-IDKVMEKQFG 532
|
Length = 715 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 42/195 (21%), Positives = 88/195 (45%), Gaps = 4/195 (2%)
Query: 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDA 136
G K L D ++ + + L ++ + SL + ++ T + ++A
Sbjct: 358 GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKIT-SLERDSILSNLTPT-LDYSGFKNA 415
Query: 137 IFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVN 196
+ E+V E L +KH+V + ++ + + I++S+TS+ ++ S+ + I H +
Sbjct: 416 DMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFS 475
Query: 197 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYH 256
P + L+EI+ TS+ + + + G K V + + GF R +L E
Sbjct: 476 PVDKMQLLEIITHDGTSKDTLASAVAVGLKQG-KVVIVVKDGPGFYTTRCLGPMLAEVIR 534
Query: 257 LVHDGVLSAKDIDRV 271
L+ +GV K +D++
Sbjct: 535 LLQEGV-DPKKLDKL 548
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 294 | |||
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 100.0 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| KOG2304|consensus | 298 | 100.0 | ||
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 100.0 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 100.0 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 100.0 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 100.0 | |
| KOG2305|consensus | 313 | 100.0 | ||
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 100.0 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 100.0 | |
| KOG1683|consensus | 380 | 99.95 | ||
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.92 | |
| KOG0409|consensus | 327 | 99.86 | ||
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.85 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.85 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.84 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.81 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.8 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.79 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.77 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.75 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.74 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.73 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.73 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.72 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.71 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.71 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.71 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.71 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.7 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.7 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.7 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.68 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.66 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.66 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.66 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.65 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.65 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.65 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.65 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.64 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.62 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.62 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.59 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.59 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.58 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.58 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.58 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.56 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.56 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.5 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.49 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.47 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.43 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.43 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.4 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.4 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.39 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.39 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.39 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.38 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.37 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.36 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.35 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.3 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.24 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.23 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.21 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.2 | |
| PF00725 | 97 | 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal | 99.2 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.18 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.17 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.15 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.12 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.11 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.09 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 99.0 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.98 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.96 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.96 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 98.94 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.93 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.9 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.86 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.85 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.82 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 98.81 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 98.8 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.74 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.73 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.69 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.66 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.65 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 98.51 | |
| KOG2380|consensus | 480 | 98.49 | ||
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 98.47 | |
| KOG2653|consensus | 487 | 98.46 | ||
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.45 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.43 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.42 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.4 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.4 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.39 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.38 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.37 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.37 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.37 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.34 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.32 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.27 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.22 | |
| KOG2711|consensus | 372 | 98.15 | ||
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.15 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.07 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.07 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.06 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.05 | |
| KOG2666|consensus | 481 | 98.05 | ||
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.05 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.99 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.96 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.93 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.88 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.85 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.84 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.84 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.82 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.78 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.74 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 97.72 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.7 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.7 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.7 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.7 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.68 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 97.68 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 97.66 | |
| KOG3124|consensus | 267 | 97.63 | ||
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.61 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.61 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.6 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.6 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.59 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 97.57 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.56 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.49 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.48 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.47 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.46 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.46 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.46 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.45 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 97.39 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.39 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.36 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.35 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.34 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.31 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.25 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.24 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.24 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.23 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.23 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.22 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.22 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.21 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.16 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.12 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.11 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.05 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.05 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.02 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.0 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.98 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.98 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.92 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.9 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 96.88 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.79 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.78 | |
| KOG0069|consensus | 336 | 96.76 | ||
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.76 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 96.76 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.75 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.74 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.72 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.72 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.68 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.64 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.64 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.61 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 96.61 | |
| PLN00106 | 323 | malate dehydrogenase | 96.56 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.56 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.54 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.54 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.5 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.46 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 96.44 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.43 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.4 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.4 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.39 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.39 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 96.38 | |
| KOG1683|consensus | 380 | 96.36 | ||
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.35 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.34 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.34 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.31 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.27 | |
| KOG1201|consensus | 300 | 96.26 | ||
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.25 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.25 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.23 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.23 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.21 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.21 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.16 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.16 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.11 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.11 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.11 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.09 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.04 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.04 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 96.03 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.01 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 95.99 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 95.97 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.9 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 95.89 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 95.89 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.88 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 95.87 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 95.87 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.86 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.84 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 95.83 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 95.83 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.83 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 95.82 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 95.82 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 95.81 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.81 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.78 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 95.73 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.71 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 95.7 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 95.68 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 95.65 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 95.65 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 95.59 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 95.57 | |
| KOG1014|consensus | 312 | 95.57 | ||
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.54 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 95.5 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 95.49 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.48 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 95.46 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.45 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 95.42 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 95.4 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 95.39 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 95.38 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.32 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 95.31 | |
| PRK08643 | 256 | acetoin reductase; Validated | 95.3 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.3 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 95.29 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.29 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 95.29 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 95.28 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 95.27 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.26 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.26 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.26 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 95.25 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 95.25 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.25 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 95.24 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.22 | |
| KOG1495|consensus | 332 | 95.2 | ||
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 95.17 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 95.17 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 95.15 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 95.14 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 95.13 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 95.13 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.12 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 95.12 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.1 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.1 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 95.09 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.08 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 95.07 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 95.07 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.06 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 95.04 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 95.02 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 95.02 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 95.02 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.01 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 95.0 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.0 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 94.98 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 94.98 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 94.97 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.96 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 94.93 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 94.88 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.86 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 94.85 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 94.84 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 94.84 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 94.84 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.83 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.83 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.83 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 94.83 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 94.81 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 94.81 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 94.75 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 94.74 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 94.73 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 94.72 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.72 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 94.71 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.68 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.67 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 94.64 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 94.64 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 94.63 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 94.63 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.59 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 94.57 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 94.56 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.56 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 94.49 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.46 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 94.45 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.45 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.44 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 94.43 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 94.43 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 94.42 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.4 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 94.4 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 94.39 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 94.39 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 94.39 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 94.38 | |
| PRK05717 | 255 | oxidoreductase; Validated | 94.34 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.34 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.32 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 94.32 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 94.29 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 94.28 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 94.28 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 94.27 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 94.26 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.24 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.21 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 94.21 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.2 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 94.2 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 94.16 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 94.14 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 94.12 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.12 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 94.11 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 94.08 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 94.07 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 94.05 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 94.01 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 94.01 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 94.0 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 94.0 | |
| KOG1370|consensus | 434 | 93.99 | ||
| PRK08017 | 256 | oxidoreductase; Provisional | 93.97 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 93.95 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 93.94 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 93.93 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.93 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 93.89 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.89 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 93.89 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 93.88 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.84 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 93.81 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 93.8 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 93.79 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 93.77 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 93.75 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 93.75 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 93.72 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 93.69 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 93.68 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 93.67 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 93.64 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.63 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 93.63 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 93.61 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.6 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 93.57 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 93.56 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 93.53 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.47 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.46 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 93.45 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 93.45 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 93.44 | |
| KOG1200|consensus | 256 | 93.4 | ||
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 93.39 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 93.36 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 93.35 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.35 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 93.34 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.3 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 93.28 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 93.2 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 93.19 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 93.18 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.14 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 93.11 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 93.07 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 93.04 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 93.0 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 92.98 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 92.87 | |
| PRK08223 | 287 | hypothetical protein; Validated | 92.86 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 92.85 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 92.84 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.76 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 92.74 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 92.74 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 92.73 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 92.71 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.71 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 92.7 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 92.7 | |
| KOG1502|consensus | 327 | 92.61 | ||
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 92.57 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 92.56 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 92.55 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 92.54 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 92.53 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 92.5 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 92.46 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 92.43 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 92.42 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 92.42 | |
| KOG0725|consensus | 270 | 92.38 | ||
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 92.33 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 92.33 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 92.26 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 92.25 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 92.25 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.24 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 92.22 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 92.12 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 92.1 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 92.1 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.03 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.99 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 91.97 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 91.96 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 91.94 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 91.92 | |
| KOG1205|consensus | 282 | 91.89 | ||
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 91.88 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 91.87 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 91.86 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 91.81 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 91.81 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 91.8 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 91.78 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 91.7 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 91.68 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 91.67 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 91.64 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 91.63 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 91.62 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 91.59 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 91.57 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 91.56 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 91.55 |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-51 Score=371.39 Aligned_cols=236 Identities=28% Similarity=0.500 Sum_probs=216.5
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
+.+++|+|| |.||++||.+++.+|++|++||++++.++.+.+++.
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~--------------------------------- 51 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVA--------------------------------- 51 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 467899999 999999999999999999999999999887766554
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.++.+.+.|. ......+++++++++++++++||+||||+||++++|+++|+++++.+++++||+
T Consensus 52 ----------~~~~~~~~~~~-----~~~~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 52 ----------NAWPALERQGL-----APGASPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred ----------HHHHHHHHcCC-----ChhhHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 33444444442 223455678889999889999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||+++++++++.+.+|.|++|+|||||++..+++||++|+.|++++++.+..|++.+|++|+++.+|.|||++||++.
T Consensus 117 SnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~ 196 (321)
T PRK07066 117 SSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLE 196 (321)
T ss_pred ECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999967999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++++||++++++|.++++|||++++.|+|++|+.+|||+++|++|.
T Consensus 197 a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gl 242 (321)
T PRK07066 197 ALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLAGG 242 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhcCh
Confidence 9999999999999999999999999999999999999999999873
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-51 Score=367.33 Aligned_cols=234 Identities=34% Similarity=0.534 Sum_probs=216.9
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||++||..++..|++|+++|++++.++++...+.
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~--------------------------------- 47 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIE--------------------------------- 47 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 468999999 999999999999988999999999999998887765
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. ..+..+++++.++++. ++++||+|||+++|++++|+++|+++++++++++|++
T Consensus 48 ----------~~l~k~~~~g~l~~~-~~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlA 115 (307)
T COG1250 48 ----------KNLEKLVEKGKLTEE-EADAALARITPTTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILA 115 (307)
T ss_pred ----------HHHHHHHhcCCCChh-hHHHHHhhccccCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEe
Confidence 456677777655431 2356789999999998 6999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||+++++++++.+.+|+||+|+|||||++.++++|+++|..|++++++++.+|.+.+|+.|+.+ .|.|||++||++.
T Consensus 116 SNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~-~D~pGFi~NRil~ 194 (307)
T COG1250 116 SNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVV-KDVPGFIVNRLLA 194 (307)
T ss_pred eccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEee-cCCCceehHhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998555 7999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++||++++++|.+++++||.+++.++|+| +|||+++|.+|
T Consensus 195 ~~~~eA~~l~~eGva~~e~ID~~~~~~~G~p---mGpf~l~D~~G 236 (307)
T COG1250 195 ALLNEAIRLLEEGVATPEEIDAAMRQGLGLP---MGPFELADLIG 236 (307)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhccCCC---ccHHHHHHHHh
Confidence 9999999999999999999999999999999 99999999987
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=343.51 Aligned_cols=234 Identities=26% Similarity=0.390 Sum_probs=215.0
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.+++|+|| |.||++||.+++.+|++|++||++++.++++.+++.
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~---------------------------------- 49 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIE---------------------------------- 49 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH----------------------------------
Confidence 45799999 999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhccc-CCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFM-SSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~-~~~~ii~ 168 (294)
+.+++++++|..+.. ...+.+++++++++++ ++++||+||||+||++++|+++|+++++.+ ++++||+
T Consensus 50 ---------~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~-~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~ 118 (286)
T PRK07819 50 ---------KSLERAVSRGKLTER-ERDAALARLRFTTDLG-DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLA 118 (286)
T ss_pred ---------HHHHHHHhcccCChh-hHHHHHhCeEeeCCHH-HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEE
Confidence 566677777755432 2345788999999995 689999999999999999999999999998 8999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHH-HcCCeeEEEcccccccHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMT-EIGMKPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~-~lG~~~v~v~~~~~g~v~nri~ 247 (294)
||||+++++.++..+.+|+|++|+||++|++..+++||+++..|++++++++.+|+. .+|+.|+++ +|.|||+.||++
T Consensus 119 snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~nRi~ 197 (286)
T PRK07819 119 SNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRA-QDRSGFVVNALL 197 (286)
T ss_pred ECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEe-cCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988 599999999 699999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 248 FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 248 ~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
.++++|+++++++|.++++|||.+++.|+||| +|||+++|.+|.
T Consensus 198 ~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p---~Gpf~~~D~~Gl 241 (286)
T PRK07819 198 VPYLLSAIRMVESGFATAEDIDKAMVLGCAHP---MGPLRLSDLVGL 241 (286)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCC---CCHHHHHHHhcc
Confidence 99999999999999999999999999999999 899999999883
|
|
| >KOG2304|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-49 Score=329.14 Aligned_cols=235 Identities=25% Similarity=0.377 Sum_probs=212.8
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.+++|+|+ |.||++||+..+.+|++|+++|+++..+.++.+.|.+.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~s-------------------------------- 57 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSS-------------------------------- 57 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHH--------------------------------
Confidence 45789999 99999999999999999999999999999999888743
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCh----hhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSP----EEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNT 165 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~----~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ 165 (294)
+.+..+++..+..... +..+.+|+.+++..++++++|+|||++.|++++|+++|++|+..+++++
T Consensus 58 -----------l~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~ 126 (298)
T KOG2304|consen 58 -----------LKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSST 126 (298)
T ss_pred -----------HHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccce
Confidence 2233333322222111 2346778888999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHH
Q psy13746 166 ILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR 245 (294)
Q Consensus 166 ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nr 245 (294)
|+++|||++.+++++...++|.||.|+|||||+..++++|++.++.|+++++..+..|.+.+|+.++-+ +|.||||+||
T Consensus 127 il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVir~~~TS~eTf~~l~~f~k~~gKttVac-kDtpGFIVNR 205 (298)
T KOG2304|consen 127 ILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVIRTDDTSDETFNALVDFGKAVGKTTVAC-KDTPGFIVNR 205 (298)
T ss_pred EEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCceee-cCCCchhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 7999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 246 IQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 246 i~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++.++++||++++++|.++.+|||.+|+.|.||| +||||+.|.+|
T Consensus 206 lLiPyl~ea~r~yerGdAskeDIDtaMklGagyP---MGPfEL~DyvG 250 (298)
T KOG2304|consen 206 LLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYP---MGPFELADYVG 250 (298)
T ss_pred HHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCC---CChHHHHHHhh
Confidence 9999999999999999999999999999999999 99999999998
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=371.16 Aligned_cols=233 Identities=24% Similarity=0.354 Sum_probs=216.3
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
..+++|+|| |.||++||..++.+|++|+++|++++.++++.+++.
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~--------------------------------- 357 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAA--------------------------------- 357 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 357899999 999999999999999999999999999988776655
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. .....+++|+++++++ ++++||+||||+||++++|+++|+++++.+++++||+
T Consensus 358 ----------~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ila 425 (715)
T PRK11730 358 ----------KLLNKQVERGKIDGA-KMAGVLSSIRPTLDYA-GFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILA 425 (715)
T ss_pred ----------HHHHHHHHcCCCChh-hHHHHHhCeEEeCCHH-HhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEE
Confidence 556677777755432 2345788999999996 6899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||+++++++++.+.+|+||+|+|||+|++.++++||++|+.|++++++.+..|++.+||.|+++ +|.|||++||++.
T Consensus 426 sNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pGfv~nRi~~ 504 (715)
T PRK11730 426 SNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLF 504 (715)
T ss_pred EcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEe-cCcCchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++|++.++++| ++++|||++++.++|+| +|||+++|++|
T Consensus 505 ~~~~ea~~lv~~G-a~~e~ID~a~~~~~G~~---~GP~~~~D~~G 545 (715)
T PRK11730 505 PYFAGFSQLLRDG-ADFRQIDKVMEKQFGWP---MGPAYLLDVVG 545 (715)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHhhCCCc---cCHHHHHHhhc
Confidence 9999999999999 89999999999999999 99999999998
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=370.18 Aligned_cols=233 Identities=21% Similarity=0.341 Sum_probs=215.9
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
..+++|+|| |.||++||..++.+|++|+++|++++.++++.+++.
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~--------------------------------- 357 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAA--------------------------------- 357 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 478999999 999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. ..+..+++++++++++ ++++||+||||+||++++|+++|+++++.+++++||+
T Consensus 358 ----------~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ila 425 (714)
T TIGR02437 358 ----------KLLNKQVERGRITPA-KMAGVLNGITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILA 425 (714)
T ss_pred ----------HHHHHHHHcCCCChh-hHHHHHhCeEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEE
Confidence 556667777654421 2345688999999996 6899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||++++++++..+.+|+|++|+|||+|++.++++||++|+.|++++++.+.+|++.+||.|+++ +|.|||+.||++.
T Consensus 426 snTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~NRl~~ 504 (714)
T TIGR02437 426 SNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLF 504 (714)
T ss_pred ECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEe-CCcccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++|+++++++| +++++||++++.++|+| +|||+++|.+|
T Consensus 505 ~~~~ea~~l~~eG-~~~~~ID~a~~~~~G~p---~GPf~l~D~~G 545 (714)
T TIGR02437 505 PYFGGFSKLLRDG-ADFVRIDKVMEKQFGWP---MGPAYLLDVVG 545 (714)
T ss_pred HHHHHHHHHHHCC-CCHHHHHHHHHhcCCCc---cCHHHHHHhhh
Confidence 9999999999999 79999999999999999 99999999998
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=332.21 Aligned_cols=237 Identities=25% Similarity=0.373 Sum_probs=210.5
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||++||..++.+|++|++||++++.++++.+.+.+..+
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~----------------------------- 51 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLAD----------------------------- 51 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHH-----------------------------
Confidence 457899999 9999999999999999999999999999988776653322
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
++...+.....-.......+++.++|+++++++||+||+|+|++.+.|+.+++++.+.+++++||+
T Consensus 52 --------------~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 52 --------------RYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred --------------HHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 222222211100012345678889999988999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
+|+|+++++++++.+.+|.||+|+||++|++.++++|+++++.|++++++.+.++++.+|++|+++.+|.|||++||++.
T Consensus 118 sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~ 197 (287)
T PRK08293 118 TNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLV 197 (287)
T ss_pred ECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHH
Confidence 99999999999988889999999999999999999999999999999999999999999999999977999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++||++++++|.++++|||++++.++|+| +|||+++|++|
T Consensus 198 ~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~---~Gp~~~~D~~G 239 (287)
T PRK08293 198 PFLSAALALWAKGVADPETIDKTWMIATGAP---MGPFGILDIVG 239 (287)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHhccCCC---cCHHHHHHHhc
Confidence 9999999999999999999999999999998 99999999998
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=351.66 Aligned_cols=233 Identities=26% Similarity=0.375 Sum_probs=214.4
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.+++|+|| |.||++||.+++.+|++|++||++++.++++.+++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~---------------------------------- 49 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIE---------------------------------- 49 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH----------------------------------
Confidence 46899999 999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+.+++++++|.++.. ..++.+++++++++++ ++++||+||||+||+.++|+.+|++++..+++++||+|
T Consensus 50 ---------~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~-~l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~Ilas 118 (503)
T TIGR02279 50 ---------ARLNSLVTKGKLTAE-ECERTLKRLIPVTDLH-ALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIAS 118 (503)
T ss_pred ---------HHHHHHHhcCCCCHH-HHHHHHhccEEeCCHH-HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEE
Confidence 556666666644321 2345778899999997 57899999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHH
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a 249 (294)
|||+++++++++.+.+|.+++|+|||+|+..++++|+++|+.|++++++.+.++++.+|+.|+++ ++.+||+.||++.+
T Consensus 119 nTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v-~d~pGfi~Nrl~~~ 197 (503)
T TIGR02279 119 NTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHC-HSTPGFIVNRVARP 197 (503)
T ss_pred CCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEe-CCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 58999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 250 ~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
+++||+.+++++++++++||++++.++|+| +|||+++|++|
T Consensus 198 ~~~EA~~l~e~g~a~~~~ID~al~~~~G~~---mGPf~l~D~~G 238 (503)
T TIGR02279 198 YYAEALRALEEQVAAPAVLDAALRDGAGFP---MGPFELTDLIG 238 (503)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhcCCCC---cCHHHHHHHhh
Confidence 999999999999999999999999999999 99999999988
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=364.98 Aligned_cols=233 Identities=19% Similarity=0.278 Sum_probs=215.2
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.+.+++|+|| |.||++||..++.+|++|+++|++++.++++.+++.
T Consensus 332 ~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~-------------------------------- 379 (737)
T TIGR02441 332 QRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVF-------------------------------- 379 (737)
T ss_pred CCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHH--------------------------------
Confidence 3578999999 999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+.+++++++|.++.. ..++.+++|++++|++ ++++||+||||+||++++|+++|+++++.+++++||
T Consensus 380 -----------~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~il 446 (737)
T TIGR02441 380 -----------KGLNKKVKRKKITSL-ERDSILSNLTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCII 446 (737)
T ss_pred -----------HHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEE
Confidence 556666777654421 2345778999999997 689999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHH
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~ 247 (294)
+||||++++++++..+.+|+|++|+|||+|++.++++||++++.|++++++.+..|++.+||.|+++ +|.|||++||++
T Consensus 447 asNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v-~d~pGFi~NRi~ 525 (737)
T TIGR02441 447 ASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVV-KDGPGFYTTRCL 525 (737)
T ss_pred EEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE-CCcCCchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 699999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 248 FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 248 ~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
.++++||++++++|. ++++||.++. ++|+| +|||+++|.+|
T Consensus 526 ~~~~~ea~~lv~eGv-~~~~ID~a~~-~~G~p---~GP~~l~D~vG 566 (737)
T TIGR02441 526 GPMLAEVIRLLQEGV-DPKKLDKLTT-KFGFP---VGAATLADEVG 566 (737)
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHH-HcCCC---CCHHHHHHHhh
Confidence 999999999999997 9999999985 89999 99999999998
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=346.63 Aligned_cols=235 Identities=25% Similarity=0.398 Sum_probs=216.0
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
..+++|+|| |.||++||.+++.+|++|++||++++.++++.+++.
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~--------------------------------- 51 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIA--------------------------------- 51 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 367899999 999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. ..++.++++++++++++ +++||+||||+||+.++|+.+|++++..+++++||+
T Consensus 52 ----------~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~aila 119 (507)
T PRK08268 52 ----------ARLAKLVEKGKLTAE-QADAALARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILA 119 (507)
T ss_pred ----------HHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEE
Confidence 556777777654321 23457888999999975 789999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
|||||+++++++..+.+|+|++|+||++|+..++++|+++|+.|++++++.+.++++.+|+.++++ ++.+||+.||++.
T Consensus 120 sntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v-~d~pGfi~Nrll~ 198 (507)
T PRK08268 120 TNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRA-KDTPGFIVNRAAR 198 (507)
T ss_pred ECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEe-cCCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 5899999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++++|++++++++++++++||++++.++|+| +|||+++|.+|.
T Consensus 199 ~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~---mGPf~l~D~~Gl 241 (507)
T PRK08268 199 PYYTEALRVLEEGVADPATIDAILREAAGFR---MGPFELMDLIGL 241 (507)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHhcCCCC---cCHHHHHHHhch
Confidence 9999999999999999999999999899999 999999999883
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=359.76 Aligned_cols=232 Identities=28% Similarity=0.416 Sum_probs=211.3
Q ss_pred CccceEEE--ccccHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.+++|+|| |.||++||..++ .+|++|+++|++++.++++.+++.
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~--------------------------------- 349 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAW--------------------------------- 349 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 57899999 999999999998 589999999999999888776654
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. ..+..+.+|+++++++ ++++||+||||+||++++|+++|+++++.+++++||+
T Consensus 350 ----------~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ila 417 (699)
T TIGR02440 350 ----------KLLDKGVKRRHMTPA-ERDNQMALITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFA 417 (699)
T ss_pred ----------HHHHHHHHcCCCCHH-HHHHHHcCeEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 456666666644321 1234678999999996 6899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||+++++++++.+.+|+|++|+|||+|++..+++||++++.|++++++.+..|++.+|+.|+++ +|.|||++||++.
T Consensus 418 snTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~ 496 (699)
T TIGR02440 418 SNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVV-ADKAGFYVNRILA 496 (699)
T ss_pred eCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE-ccccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++++|+++++++|. ++++||.+++ ++|+| +|||+++|.+|.
T Consensus 497 ~~~~Ea~~l~~~G~-~~~dID~a~~-~~G~p---~GPf~l~D~vGl 537 (699)
T TIGR02440 497 PYMNEAARLLLEGE-PVEHIDKALV-KFGFP---VGPITLLDEVGI 537 (699)
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHH-HcCCC---cCHHHHHHHhch
Confidence 99999999999995 9999999997 79998 999999999883
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=356.80 Aligned_cols=232 Identities=28% Similarity=0.391 Sum_probs=212.5
Q ss_pred CccceEEE--ccccHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.+++|+|| |.||++||..++ .+|++|+++|++++.++++.+++.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~--------------------------------- 354 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSW--------------------------------- 354 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 58899999 999999999999 889999999999999888776654
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. .....+++|+++++++ ++++||+||||+||++++|+++|+++++++++++||+
T Consensus 355 ----------~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ila 422 (708)
T PRK11154 355 ----------DLLDKKVKRRHLKPS-ERDKQMALISGTTDYR-GFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFA 422 (708)
T ss_pred ----------HHHHHHHHcCCCCHH-HHHHHHhcEEEeCChH-HhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 556666776644321 1245678999999996 7899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||++++++|++.+.+|+||+|+|||+|++..+++||++|+.|++++++.+..+++.+|+.|+++ +|.|||+.||++.
T Consensus 423 snTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~ 501 (708)
T PRK11154 423 SNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVV-RDGAGFYVNRILA 501 (708)
T ss_pred ECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEE-eccCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++++|+++++++|. ++++||.+++ ++||| +|||+++|.+|.
T Consensus 502 ~~~~EA~~lv~eGv-~~~dID~a~~-~~G~p---~GPf~~~D~~Gl 542 (708)
T PRK11154 502 PYINEAARLLLEGE-PIEHIDAALV-KFGFP---VGPITLLDEVGI 542 (708)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHH-HcCCC---CCHHHHHHHhhh
Confidence 99999999999986 9999999998 79998 899999999883
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=319.10 Aligned_cols=233 Identities=27% Similarity=0.469 Sum_probs=206.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||++||.+++++|++|++||++++.++++.+++.+
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~---------------------------------- 46 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIAS---------------------------------- 46 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH----------------------------------
Confidence 4689999 9999999999999999999999999999887765441
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.+...++.|.++.. .....+.+++.++++.+++++||+||+|+|++.++|+.+++++.+.++++++|+++
T Consensus 47 ---------~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 47 ---------IFEQGVARGKLTEA-ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred ---------HHHHHHHcCCCCHH-HHHHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 12222223322210 11234567888899988899999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHH
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~ 250 (294)
+||++++.+++.+.+|.+++|+||++|++.++++|+++|+.|+++++++++++++.+|++++++ +|.|||+.||++.++
T Consensus 117 tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v-~d~~Gf~~nRl~~~~ 195 (288)
T PRK09260 117 TSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV-NEFPGFVTSRISALV 195 (288)
T ss_pred CCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcccHHHHHHHHHH
Confidence 9999999999988899999999999999999999999999999999999999999999999999 599999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 251 ~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++||++++++|.++++|||.+++.|+||| +|||+++|.+|
T Consensus 196 ~~ea~~~~~~gv~~~~~iD~~~~~g~g~p---~Gp~~~~D~~G 235 (288)
T PRK09260 196 GNEAFYMLQEGVATAEDIDKAIRLGLNFP---MGPLELGDLVG 235 (288)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhCCCCC---CCHHHHHHHhh
Confidence 99999999999999999999999999998 89999999987
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=320.98 Aligned_cols=234 Identities=33% Similarity=0.522 Sum_probs=209.1
Q ss_pred ccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHHH
Q psy13746 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTL 101 (294)
Q Consensus 22 mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~l 101 (294)
||++||..++.+|++|+++|++++.++... +.++++++++++.+
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~------------------------------------~~~~~~~~~i~~~~ 44 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWR------------------------------------ALDAEARAEIERTL 44 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhH------------------------------------HHHHHHHHHHHHHH
Confidence 899999999999999999999996543210 12334555666778
Q ss_pred HHHHhccccCCCCChhhhccCeeeccC--hhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHH
Q psy13746 102 QDYHQKGCLKGSLSPEEQFGLISGTPV--LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 179 (294)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~i~~~~~--~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~i 179 (294)
++++++|.++.. .....+++++++++ +.+++++||+||||+||++++|+.+|+++++.+++++||+||||+++++++
T Consensus 45 ~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~l 123 (314)
T PRK08269 45 AALVALGRIDAA-QADAVLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDL 123 (314)
T ss_pred HHHHHcCCCChh-hHHHHHhCeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHH
Confidence 888888765432 23456889998765 667889999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHHHHHHHHHHH
Q psy13746 180 SEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259 (294)
Q Consensus 180 a~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~~~Ea~~l~~ 259 (294)
++.+.+|+|++|+||++|++..+++||++++.|+++++++++++++.+|+.++++ +|.+|++.||++.++++|++.+++
T Consensus 124 a~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v-~d~~Gfi~nri~~~~l~EAl~l~e 202 (314)
T PRK08269 124 QRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVC-GPSPGYIVPRIQALAMNEAARMVE 202 (314)
T ss_pred HhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe-cCCCCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 588999999999999999999999
Q ss_pred cCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 260 ~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
+++++++++|.+++.|+|+|++.+|||+++|.+|
T Consensus 203 ~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~G 236 (314)
T PRK08269 203 EGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGG 236 (314)
T ss_pred hCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhh
Confidence 9999999999999999999988899999999987
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=316.17 Aligned_cols=234 Identities=29% Similarity=0.449 Sum_probs=210.5
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|++++|+|| |.||.+||..++.+|++|++||++++.++++.+.+.
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~--------------------------------- 47 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATIT--------------------------------- 47 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 456799999 999999999999999999999999999887765554
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.++++.+.|.++.. .......+++++++++ .+++||+||+|+||+.++|+++++++.++++++++|+
T Consensus 48 ----------~~l~~~~~~g~~~~~-~~~~~~~~l~~~~~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 48 ----------KSLDRLVKKGKMTEA-DKEAALARITGTTDLD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred ----------HHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 445555666543321 1223456788888887 5899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
|++|+++++.+++.+.+|.|++++||++|++..+++|+++++.|++++++.++++++.+|+.|+++ +|.||++.||++.
T Consensus 116 s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~-~d~~g~i~~Ri~~ 194 (282)
T PRK05808 116 TNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEV-KNAPGFVVNRILI 194 (282)
T ss_pred ECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEe-cCccChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++|+++++++|.++++|||.+++.|+||| +|||+++|.+|
T Consensus 195 ~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p---~Gp~~~~D~~G 236 (282)
T PRK05808 195 PMINEAIFVLAEGVATAEDIDEGMKLGCNHP---IGPLALADLIG 236 (282)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhCCCCC---CCHHHHHHHhh
Confidence 9999999999999999999999999999998 89999999987
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=316.58 Aligned_cols=237 Identities=30% Similarity=0.460 Sum_probs=207.5
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||++||..++.+|++|++||++++.++++.+.+.+..
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~------------------------------ 50 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGP------------------------------ 50 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhh------------------------------
Confidence 457899999 999999999999999999999999999988776654200
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
..++.+++.|..+.. ..++.+.+++.++++. ++++||+||+|+|++.++|+++++++.+.+++++||+
T Consensus 51 ----------~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 51 ----------YGLRNLVEKGKMSED-EAKAIMARIRTSTSYE-SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred ----------hhHHHHHHcCCCCHH-HHHHHHhCcEeeCCHH-HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 012223333322110 1123456677778884 7899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
|+||+++++++++.+.+|.|++|+||++|+...+++|+++++.|++++++.+.++++.+|+.|+++ +|.|||+.||++.
T Consensus 119 S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v-~d~pgfv~nRl~~ 197 (291)
T PRK06035 119 SNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPIEV-ADVPGFFTTRFIE 197 (291)
T ss_pred EcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe-CCCCCeeHHHHHH
Confidence 999999999999999899999999999999999999999999999999999999999999999999 5999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++||++++++|.++++|||++++.++|+| +|||+++|++|
T Consensus 198 ~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~---~Gp~~~~D~~G 239 (291)
T PRK06035 198 GWLLEAIRSFEIGIATIKDIDEMCKLAFGFP---MGPFELMDIIG 239 (291)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhhcCCCc---cCHHHHHHHhh
Confidence 9999999999999999999999999999999 99999999988
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=310.59 Aligned_cols=235 Identities=27% Similarity=0.374 Sum_probs=207.6
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||.+||..++.+|++|++||++++.++++.+.+.+
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~-------------------------------- 49 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATING-------------------------------- 49 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence 557899999 9999999999999999999999999998887665542
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.+..+.+.|.++.. .....+.+++++++++ ++++||+||+|+|++.++|+.+++++.+.++++++|+
T Consensus 50 -----------~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 50 -----------NLARQVAKGKISEE-ARAAALARISTATDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -----------HHHHHHHcCCCCHH-HHHHHHhCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 23333333432211 1123456688888886 5899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
|+||+++++.+++.+.+|.+++|+||++|++..+++|++++..|++++++.+.++++.+|+.++++ +|.|||+.||++.
T Consensus 117 s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~-~d~pg~i~nRl~~ 195 (292)
T PRK07530 117 TNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVA-EDFPAFIVNRILL 195 (292)
T ss_pred EcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcCChHHHHHHH
Confidence 999999999999988889999999999999899999999999999999999999999999999998 6999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++++|+++++++|..++++||.+++.|+||| +|||+++|.+|.
T Consensus 196 ~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~---~GP~~~~D~~Gl 238 (292)
T PRK07530 196 PMINEAIYTLYEGVGSVEAIDTAMKLGANHP---MGPLELADFIGL 238 (292)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhCCCCC---CCHHHHHHHhhh
Confidence 9999999999999999999999999999999 999999999873
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=308.60 Aligned_cols=234 Identities=29% Similarity=0.417 Sum_probs=208.4
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.+++|+|| |.||++||..++.+|++|++||++++.++++++.+.
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~---------------------------------- 48 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSIS---------------------------------- 48 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH----------------------------------
Confidence 46789999 999999999999999999999999999887766554
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+.++++++.|.++.. .....+++++++++++ ++++||+||+|+||+.++|+.+++++.+.+++++||+|
T Consensus 49 ---------~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 49 ---------SSLARLVKKGKMSQE-EADATLGRIRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred ---------HHHHHHHHcCCCCHH-HHHHHHhceEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 445555555533211 1123445677777775 68999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHH
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a 249 (294)
++|+++++++++.+.++.+++|+||++|+..++++|+++++.|+++++++++++++.+|+.++++ ++.+|++.||++.+
T Consensus 118 ~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~-~d~~g~i~nri~~~ 196 (295)
T PLN02545 118 NTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCS-QDYPGFIVNRILMP 196 (295)
T ss_pred CCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEe-cCcccHHHHHHHHH
Confidence 99999999999988889999999999999999999999999999999999999999999999998 69999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 250 ~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
+++|+++++++|.+++++||.+++.|+||| +|||+++|.+|.
T Consensus 197 ~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~---~Gp~~~~D~~Gl 238 (295)
T PLN02545 197 MINEAFYALYTGVASKEDIDTGMKLGTNHP---MGPLHLADFIGL 238 (295)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhccCCC---CCHHHHHHHhch
Confidence 999999999999999999999999999999 899999999883
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=298.32 Aligned_cols=236 Identities=44% Similarity=0.747 Sum_probs=211.2
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||++||..++++|++|++||++++.++.+.+.+.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~----------------------------------- 46 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIA----------------------------------- 46 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHH-----------------------------------
Confidence 4689999 999999999999999999999999999887766544
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
..+..+.+.|.+++. .....+++++.++++.+++++||+||+|+|++.++|+.+++++.+.++++++++++
T Consensus 47 --------~~l~~l~~~g~~~~~-~~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ss 117 (308)
T PRK06129 47 --------GRLEDLAAFDLLDGE-APDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASS 117 (308)
T ss_pred --------HHHHHHHHcCCCchh-hHHHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEe
Confidence 344555555544321 22345667888899988899999999999999999999999999988999999999
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHH
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~ 250 (294)
||+..+.++++.+.++.++++.||++|+...+++|+++++.|+++++++++++++.+|+++++++++.+|+++||++.++
T Consensus 118 ts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~ 197 (308)
T PRK06129 118 TSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGAL 197 (308)
T ss_pred CCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHH
Confidence 99998889999888999999999999998889999999999999999999999999999999997799999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhccc
Q psy13746 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLN 292 (294)
Q Consensus 251 ~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~ 292 (294)
++||+.+++++++|++++|++++.|+|++|+.+|||++.|..
T Consensus 198 ~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~ 239 (308)
T PRK06129 198 LREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLN 239 (308)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcc
Confidence 999999999999999999999999999999889999999974
|
|
| >KOG2305|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=279.13 Aligned_cols=239 Identities=54% Similarity=0.915 Sum_probs=228.0
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|++.||+|+ |.+|++||..|++.||+|-+||+.++++..+.+.++
T Consensus 1 ms~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~--------------------------------- 47 (313)
T KOG2305|consen 1 MSFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVE--------------------------------- 47 (313)
T ss_pred CCccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHH---------------------------------
Confidence 567899999 999999999999999999999999999988777654
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.++++-+.|..+|.++.++.+..|+.+++++|++++|=.|-||+||++++|+.+++++++.+.+.+|++
T Consensus 48 ----------Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIla 117 (313)
T KOG2305|consen 48 ----------KELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILA 117 (313)
T ss_pred ----------HHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEe
Confidence 7788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
|+||++.++.+.+.+.+.++++-.||.|||+..+++|++|.+.|+|+++++.+++++.+|.+|+...++.-||..||+..
T Consensus 118 SSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~ 197 (313)
T KOG2305|consen 118 SSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQY 197 (313)
T ss_pred ccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCChhHHHHHHHHHHHhCCCCcccccccccceeccccH
Confidence 99999999988888989999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhccc
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLN 292 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~ 292 (294)
+++||.-+++..|+++..|+|..|+.|.|.+++..||+|++.++
T Consensus 198 Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLN 241 (313)
T KOG2305|consen 198 AILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLN 241 (313)
T ss_pred HHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcC
Confidence 99999999999999999999999999999999999999998764
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=309.26 Aligned_cols=233 Identities=37% Similarity=0.566 Sum_probs=205.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||++||..|+++|++|++||+++++++...+.+.+..
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~-------------------------------- 51 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAE-------------------------------- 51 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHH--------------------------------
Confidence 5789999 999999999999999999999999999876544322110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+.+..+. . .+....+++++++++.+++++||+||+|+||+.++|+.+|+++.+.+++++||+|+
T Consensus 52 --------~~~~~l~------~--~~~~~~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~Ss 115 (495)
T PRK07531 52 --------RAYAMLT------D--APLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSS 115 (495)
T ss_pred --------HHHhhhc------c--chhhhhhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 0111000 0 00112235678889988899999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHH
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~ 250 (294)
||+++++.+++.+.++.++++.||++|++.++++++++|+.|+++++++++++++.+|+++++++++.+||+.||++.++
T Consensus 116 Tsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~ 195 (495)
T PRK07531 116 TSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEAL 195 (495)
T ss_pred CCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHH
Confidence 99999999999888899999999999999999999999999999999999999999999999997799999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 251 ~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++||+.+++++++|++++|++++.|+|.+|+.+|||++.|+.|
T Consensus 196 ~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 196 WREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 9999999999999999999999999999999999999999987
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=285.41 Aligned_cols=233 Identities=33% Similarity=0.521 Sum_probs=203.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||++||..|+++|++|++||++++.++++.+.+.+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~--------------------------------- 50 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERA--------------------------------- 50 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHH---------------------------------
Confidence 5799999 99999999999999999999999999988776644311
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+......+. ....+.+++.++++.+++++||+||+|+|++.+.|+.+++++.+.++++++|+|+
T Consensus 51 ----------~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~ 114 (311)
T PRK06130 51 ----------LGVYAPLGI------ASAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATN 114 (311)
T ss_pred ----------HHHhhhccc------HHHHhhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 111100000 0012345677788887889999999999999989999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHH
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~ 250 (294)
+|+++++.+++.+.++.+++++||++|+..++++++++++.++++.++.++++++.+|+.++++.++.+|+++||++.++
T Consensus 115 tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~ 194 (311)
T PRK06130 115 TSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHAL 194 (311)
T ss_pred CCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHH
Confidence 99999999998888889999999999999888999999999999999999999999999999997688999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 251 ~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++||+.++++++++++++|.+++.++|||++.+|||+++|.+|.
T Consensus 195 ~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl 238 (311)
T PRK06130 195 AREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNGL 238 (311)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhcc
Confidence 99999999999999999999999999999888999999999873
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=256.87 Aligned_cols=177 Identities=35% Similarity=0.566 Sum_probs=146.8
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||++||..++.+|++|++||++++.++++.+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~------------------------------------- 43 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIE------------------------------------- 43 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHH-------------------------------------
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHH-------------------------------------
Confidence 68999 999999999999999999999999999998887765
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
+.|++++++|..+.. .....++++++++|++++. +||+||||+||++++|+++|+++++.+++++||+||||
T Consensus 44 ------~~l~~~~~~~~~~~~-~~~~~~~~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 44 ------RLLDRLVRKGRLSQE-EADAALARISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp ------HHHHHHHHTTTTTHH-HHHHHHHTEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred ------HHHhhhhhhccchhh-hhhhhhhhcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 445556665533210 1245678899999999765 99999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 173 SFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 173 t~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
++++++++..+.+|+|++|+|||+|++..+++||++++.|++++++++..|++.+|+.|+++ +|
T Consensus 116 sl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v-~D 179 (180)
T PF02737_consen 116 SLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTPVVV-KD 179 (180)
T ss_dssp SS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEE-ES
T ss_pred CCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEe-cC
Confidence 99999999999999999999999999999999999999999999999999999999999998 45
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >KOG1683|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-28 Score=218.40 Aligned_cols=222 Identities=22% Similarity=0.266 Sum_probs=196.6
Q ss_pred ccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHHH
Q psy13746 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTL 101 (294)
Q Consensus 22 mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~l 101 (294)
||++||..+..+|++|++.|.+...++++...+. ..+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~-------------------------------------------a~l 37 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLA-------------------------------------------AHL 37 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHH-------------------------------------------Hhh
Confidence 8999999999999999999999888776655433 333
Q ss_pred HHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHh
Q psy13746 102 QDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSE 181 (294)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~ 181 (294)
++.+.++.+++. ..+....++..+.|+. .++++|+|||++.||+++|++++.+|++.++++||+++|||++++..+++
T Consensus 38 ~~~~~~~~~~~~-~~~~~~~~L~~~~Dy~-~~~~~dmvieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa 115 (380)
T KOG1683|consen 38 NSEVKRGRLSGL-EREKTKSNLVETLDYT-GFANADMVIEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISA 115 (380)
T ss_pred hHHHhhcccccc-chhhhhhhcccccccc-cccccceeccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhh
Confidence 334444444332 2234455677788887 58999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHHHHHHHHHHHcC
Q psy13746 182 HSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVHDG 261 (294)
Q Consensus 182 ~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~~~Ea~~l~~~~ 261 (294)
.+..|++++|.||+.|.+.++++||+.+..|+..++..+.+.-...|+.|++| ++++||.+||++..+++++..+..+-
T Consensus 116 ~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvV-g~c~gf~v~r~l~~y~~~~~~~l~e~ 194 (380)
T KOG1683|consen 116 GLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVV-GNCCGFRVNRLLPPYTIGLNELLLEI 194 (380)
T ss_pred ccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEe-ccCCceEEEecccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999 59999999999999999999999998
Q ss_pred CCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 262 VLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 262 ~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++.++|+.++. ||++ +||+.+.|.+|
T Consensus 195 g~~p~~iD~~~t~-fGf~---~g~~~L~d~~g 222 (380)
T KOG1683|consen 195 GADPWLIDSLITK-FGFR---VGERALADGVG 222 (380)
T ss_pred CCCHHHHHHHHHh-cCcc---ccHHHHhhccC
Confidence 8999999999995 9999 99999999887
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=186.80 Aligned_cols=193 Identities=18% Similarity=0.219 Sum_probs=153.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHH-HHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQI-ENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.||.+||.+|.++||+|++|||++++. +.+.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~-------------------------------------- 42 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA-------------------------------------- 42 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH--------------------------------------
Confidence 489999 9999999999999999999999999883 32221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILS 168 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~ 168 (294)
.| .....++.++++++|+||.|+|++.+++..++ ..+.+.++++++++
T Consensus 43 ----------------~G--------------a~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~I 92 (286)
T COG2084 43 ----------------AG--------------ATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVI 92 (286)
T ss_pred ----------------cC--------------CcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEE
Confidence 23 23456778899999999999999998877777 46888899999998
Q ss_pred ecCCCCCHHH---HHhhcCCCCceeeeeecCCC-CC------CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 169 SSTSSFLPSV---LSEHSTHRSQFIVAHPVNPP-YF------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 169 s~tSt~~~~~---ia~~l~~~~~~ig~h~~~p~-~~------~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
+ .||++++. +++.+. -.|.+|++.| .. ...+.|+.| .+++.+++++++|+.+|++++++++.+
T Consensus 93 D-mSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtLtimvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G 165 (286)
T COG2084 93 D-MSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTLTIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVG 165 (286)
T ss_pred E-CCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCceEEEeC--CCHHHHHHHHHHHHHhcCceEEECCCC
Confidence 5 56777763 333332 3467777744 22 235555655 589999999999999999999998776
Q ss_pred ccc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcC
Q psy13746 239 RGF---ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYA 281 (294)
Q Consensus 239 ~g~---v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~ 281 (294)
.|. ++|+++. ..+.||+.++++.|+|++.+.++++.+++.+|.
T Consensus 166 ~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~ 215 (286)
T COG2084 166 AGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWI 215 (286)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChH
Confidence 665 7888875 468999999999999999999999998888873
|
|
| >KOG0409|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=164.62 Aligned_cols=195 Identities=19% Similarity=0.191 Sum_probs=150.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
.++|+|| |.||++|+.+|.++||+|++|||+.+++++.++
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~-------------------------------------- 76 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQE-------------------------------------- 76 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHH--------------------------------------
Confidence 5799999 999999999999999999999999988776543
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHH--HhcccCCCeEEE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILS 168 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~--l~~~~~~~~ii~ 168 (294)
.|. +...++.|.+++||+||.|+|.+..++..++.. +.+.++++....
T Consensus 77 ----------------~Ga--------------~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~ 126 (327)
T KOG0409|consen 77 ----------------AGA--------------RVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKAT 126 (327)
T ss_pred ----------------hch--------------hhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceE
Confidence 231 345788888999999999999999888777753 445455655442
Q ss_pred ecCCCCCHH---HHHhhcCCCCceeeeeecCCC-CC------CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 169 SSTSSFLPS---VLSEHSTHRSQFIVAHPVNPP-YF------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 169 s~tSt~~~~---~ia~~l~~~~~~ig~h~~~p~-~~------~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
..+||+++. +|++.+. ..+..|++.| +. ...+.|+.| ++++.++++.++|+.+|+++++++.-+
T Consensus 127 vDmSTidp~~s~ei~~~i~----~~~~~~vDAPVSGg~~~A~~G~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~G 200 (327)
T KOG0409|consen 127 VDMSTIDPDTSLEIAKAIS----NKGGRFVDAPVSGGVKGAEEGTLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVG 200 (327)
T ss_pred EeccccCHHHHHHHHHHHH----hCCCeEEeccccCCchhhhcCeEEEEec--CcHHHHHHHHHHHHHhcceEEEecccC
Confidence 245666665 5555543 2355555533 32 235666666 699999999999999999999997555
Q ss_pred ccc---HHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHcccCCCcC
Q psy13746 239 RGF---ALNRIQFA----VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYA 281 (294)
Q Consensus 239 ~g~---v~nri~~a----~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~ 281 (294)
.|. ++|+|+.+ .++|++.++++.++|+..+..++..|..|++-
T Consensus 201 nG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~ 250 (327)
T KOG0409|consen 201 NGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSM 250 (327)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHH
Confidence 554 78888753 58999999999999999999999988777763
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-20 Score=167.20 Aligned_cols=191 Identities=18% Similarity=0.255 Sum_probs=142.7
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||++||..|++.|++|++||+++++++++.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~---------------------------------------- 40 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA---------------------------------------- 40 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------------------------
Confidence 58999 999999999999999999999999988665432
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH--HHhcccCCCeEEEec
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSS 170 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ 170 (294)
.|. ...++..+++++||+||+|+|++..++..++. .+...++++++|++
T Consensus 41 --------------~g~--------------~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd- 91 (291)
T TIGR01505 41 --------------AGA--------------VTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD- 91 (291)
T ss_pred --------------CCC--------------cccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-
Confidence 121 12356667889999999999998777665543 36667788888874
Q ss_pred CCCCCHH---HHHhhcCCCCceeeeeecCCCC-------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc
Q psy13746 171 TSSFLPS---VLSEHSTHRSQFIVAHPVNPPY-------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 240 (294)
Q Consensus 171 tSt~~~~---~ia~~l~~~~~~ig~h~~~p~~-------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g 240 (294)
+|+..+. ++.+.+..+ |.||+++|. ....+.++.+ ++++.+++++++++.+|++++++++.++|
T Consensus 92 ~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a 165 (291)
T TIGR01505 92 MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLSIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDG 165 (291)
T ss_pred CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEEEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHH
Confidence 5565554 454444321 444444321 1223445555 47899999999999999999999765666
Q ss_pred ---cHHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 241 ---FALNRIQFA----VLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 241 ---~v~nri~~a----~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
.++|+++.+ .++|++.++++.+++++++.+++..+.+.++
T Consensus 166 ~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~ 212 (291)
T TIGR01505 166 QTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGST 212 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCH
Confidence 378888765 4899999999999999999999998777653
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=182.32 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=118.9
Q ss_pred ccCCCeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc
Q psy13746 160 FMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR 239 (294)
Q Consensus 160 ~~~~~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~ 239 (294)
...++.++.+..++.+.+..+....+|.+++|+||++|++..+++||+++..|++++++.+.+|++.+|+.|+.+ +|.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v-~d~~ 415 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVI-RDSP 415 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEe-CCCc
Confidence 345677777666666566665555688999999999999999999999999999999999999999999999999 6999
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 240 GFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 240 g~v~nri~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
|++.||++.++++||++++++|.++++|||.+++.|+||| +|||+|+|.+|.
T Consensus 416 Gfi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p---~GP~~~~D~~Gl 467 (507)
T PRK08268 416 GFVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYP---LGPLAWGDRLGA 467 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCC---cCHHHHHHHhCH
Confidence 9999999999999999999999999999999999999999 899999999883
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=164.06 Aligned_cols=191 Identities=16% Similarity=0.201 Sum_probs=143.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||.++|..+++.|++|++||++++.++++.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~--------------------------------------- 43 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA--------------------------------------- 43 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH---------------------------------------
Confidence 589999 999999999999999999999999987654321
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s 169 (294)
.| ...++++.+++++||+||+|+|++..++..++ .++.+.++++++|+
T Consensus 44 ---------------~g--------------~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii- 93 (296)
T PRK11559 44 ---------------AG--------------AETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI- 93 (296)
T ss_pred ---------------CC--------------CeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-
Confidence 12 23456777788999999999999877665554 34677788899887
Q ss_pred cCCCCCHH---HHHhhcCCCCceeeeeecCCCCC-------CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc
Q psy13746 170 STSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF-------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR 239 (294)
Q Consensus 170 ~tSt~~~~---~ia~~l~~~~~~ig~h~~~p~~~-------~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~ 239 (294)
++|+..+. ++++.+.. .|.||+++|.. ...+.++.| ++++.+++++++++.+|+.++++++.++
T Consensus 94 d~st~~~~~~~~l~~~~~~----~g~~~~d~pv~g~~~~a~~g~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~ 167 (296)
T PRK11559 94 DMSSIAPLASREIAAALKA----KGIEMLDAPVSGGEPKAIDGTLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGA 167 (296)
T ss_pred ECCCCCHHHHHHHHHHHHH----cCCcEEEcCCCCCHHHHhhCcEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCH
Confidence 45555554 34444432 25566654422 133445555 4789999999999999999999965566
Q ss_pred cc---HHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHcccCCC
Q psy13746 240 GF---ALNRIQFA----VLNECYHLVHDGVLSAKDIDRVMSEGLGLR 279 (294)
Q Consensus 240 g~---v~nri~~a----~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~ 279 (294)
|. ++|+++.+ .++|++.++++.++++++++++++.+++.+
T Consensus 168 a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s 214 (296)
T PRK11559 168 GNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGS 214 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccC
Confidence 66 47777644 689999999999999999999999877654
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=156.04 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=138.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||.+||..|+++|++|++||+++++++++.+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~--------------------------------------- 42 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD--------------------------------------- 42 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH---------------------------------------
Confidence 489999 999999999999999999999999988765432
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s 169 (294)
.| ...+.++.+++++||+||.|+|++..++..+. ..+.+.++++++++
T Consensus 43 ---------------~g--------------~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi- 92 (296)
T PRK15461 43 ---------------KG--------------ATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI- 92 (296)
T ss_pred ---------------cC--------------CcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-
Confidence 12 12346777788999999999999876655443 24566677888886
Q ss_pred cCCCCCHHH---HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc-
Q psy13746 170 STSSFLPSV---LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF- 241 (294)
Q Consensus 170 ~tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~- 241 (294)
++||..+.. +++.+. +..+|+.......+ ..+.+..++.| +++.+++++++|+.+|++++++++.+.|.
T Consensus 93 d~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~ 169 (296)
T PRK15461 93 DMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGG---TAEQVERATPILMAMGNELINAGGPGMGIR 169 (296)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHH
Confidence 566766653 333332 33344443222211 12345545554 88999999999999999999986443442
Q ss_pred --HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccC
Q psy13746 242 --ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLG 277 (294)
Q Consensus 242 --v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g 277 (294)
++|+++. ..++|++.++++.|+|++.+.+++..+.+
T Consensus 170 ~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~ 211 (296)
T PRK15461 170 VKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAA 211 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 5666543 46799999999999999999999986644
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-18 Score=153.01 Aligned_cols=184 Identities=18% Similarity=0.181 Sum_probs=137.7
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQH 99 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 99 (294)
|.||.+||..|+++|++|++||+++++++.+.+
T Consensus 5 G~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----------------------------------------------- 37 (288)
T TIGR01692 5 GNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----------------------------------------------- 37 (288)
T ss_pred cHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999988765432
Q ss_pred HHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH---HHHhcccCCCeEEEecCCCCCH
Q psy13746 100 TLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY---RAIDIFMSSNTILSSSTSSFLP 176 (294)
Q Consensus 100 ~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~---~~l~~~~~~~~ii~s~tSt~~~ 176 (294)
.| ...++++.++++++|+||.|+|.+..++ .++ .++.+.+++++++++ +||+.+
T Consensus 38 -------~g--------------~~~~~s~~~~~~~advVil~vp~~~~~~-~v~~g~~~l~~~~~~g~~vid-~st~~p 94 (288)
T TIGR01692 38 -------AG--------------AQAAASPAEAAEGADRVITMLPAGQHVI-SVYSGDEGILPKVAKGSLLID-CSTIDP 94 (288)
T ss_pred -------cC--------------CeecCCHHHHHhcCCEEEEeCCChHHHH-HHHcCcchHhhcCCCCCEEEE-CCCCCH
Confidence 12 2345678888999999999999876554 444 567777888888874 557777
Q ss_pred HHH---HhhcCCCCceeeeeecCCC--------CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc---H
Q psy13746 177 SVL---SEHSTHRSQFIVAHPVNPP--------YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF---A 242 (294)
Q Consensus 177 ~~i---a~~l~~~~~~ig~h~~~p~--------~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~---v 242 (294)
+.. ++.+.. .|.+|.+.| ..+.+..++.| +++.+++++++|+.+|++++++++.+.|. +
T Consensus 95 ~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl 167 (288)
T TIGR01692 95 DSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTFMVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKI 167 (288)
T ss_pred HHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHH
Confidence 643 333321 244444422 22445555555 78899999999999999999997545554 6
Q ss_pred HHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 243 LNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 243 ~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
+|+++. ..++|++.++++.|+|++++.++++.+.|.+|
T Consensus 168 ~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~ 209 (288)
T TIGR01692 168 CNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCW 209 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCc
Confidence 666653 35889999999999999999999998887765
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.6e-18 Score=152.15 Aligned_cols=192 Identities=17% Similarity=0.209 Sum_probs=139.5
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||.+||.+|.++|++|++||+++. .++..
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~----------------------------------------- 39 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELL----------------------------------------- 39 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHH-----------------------------------------
Confidence 69999 99999999999999999999999873 22211
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH--HHhcccCCCeEEEec
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSS 170 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ 170 (294)
+.| .....+..+++++||+||.|+|++..++..++. .+...+.++.+|++
T Consensus 40 -------------~~g--------------~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd- 91 (292)
T PRK15059 40 -------------SLG--------------AVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD- 91 (292)
T ss_pred -------------HcC--------------CeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-
Confidence 112 123456777789999999999998766655543 25556678888874
Q ss_pred CCCCCHHH---HHhhcC-CCCceeeeeecCCC----CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc-
Q psy13746 171 TSSFLPSV---LSEHST-HRSQFIVAHPVNPP----YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF- 241 (294)
Q Consensus 171 tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~----~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~- 241 (294)
+||+++.. +++.+. +..+|+.. |+... ..+.+..++.| +++.+++++++|+.+|++++++++.+.|.
T Consensus 92 ~sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~~gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~ 167 (292)
T PRK15059 92 MSSISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIMVGG---DEAVFERVKPLFELLGKNITLVGGNGDGQT 167 (292)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEEEcC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHH
Confidence 56777663 334332 34456653 44321 23445555555 89999999999999999999997555553
Q ss_pred --HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 242 --ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 242 --v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
++|+++. ..+.|++.++++.|+|++++.+++..+.|.+|
T Consensus 168 ~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~ 212 (292)
T PRK15059 168 CKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSR 212 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCH
Confidence 5666654 36899999999999999999999987777654
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=150.05 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=124.1
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||+++|..|+++|++|++||++++.++++.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~---------------------------------------- 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE---------------------------------------- 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----------------------------------------
Confidence 79999 999999999999999999999999988765532
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
.|..+ ..+++.+ ++++||+||+|+|++.. .++++++.+.++++++|++ ++
T Consensus 42 --------------~g~~~------------~~~~~~~-~~~~aDlVilavp~~~~--~~~~~~l~~~l~~~~ii~d-~~ 91 (279)
T PRK07417 42 --------------RGLVD------------EASTDLS-LLKDCDLVILALPIGLL--LPPSEQLIPALPPEAIVTD-VG 91 (279)
T ss_pred --------------CCCcc------------cccCCHh-HhcCCCEEEEcCCHHHH--HHHHHHHHHhCCCCcEEEe-Cc
Confidence 12111 1234444 67999999999998764 4678899888899998865 44
Q ss_pred CCCHHHHHhhcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc
Q psy13746 173 SFLPSVLSEHSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 240 (294)
Q Consensus 173 t~~~~~ia~~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g 240 (294)
++....+......+.+|+++|||.+.. .++.+.+++++.++++.++.++++++.+|+++++++++.++
T Consensus 92 Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD 171 (279)
T PRK07417 92 SVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTADPEEHD 171 (279)
T ss_pred chHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHH
Confidence 555555555444455799999998543 35677789999999999999999999999999999777777
Q ss_pred cHHH
Q psy13746 241 FALN 244 (294)
Q Consensus 241 ~v~n 244 (294)
.+..
T Consensus 172 ~~~a 175 (279)
T PRK07417 172 RAVA 175 (279)
T ss_pred HHHH
Confidence 6443
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=153.75 Aligned_cols=202 Identities=12% Similarity=0.167 Sum_probs=140.2
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
+..+|+|| |.||++||.+|+++||+|++|||++++.+...+...
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~---------------------------------- 50 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------------------------- 50 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhh----------------------------------
Confidence 45689999 999999999999999999999999999876543100
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccC---CcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
..|. ..+....+++++++. +|+||.|+|.+..+. +++..+.+.+.++.|
T Consensus 51 ----------------~~Ga-----------~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~-~Vi~gl~~~l~~G~i 102 (493)
T PLN02350 51 ----------------KEGN-----------LPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD-QTIKALSEYMEPGDC 102 (493)
T ss_pred ----------------hcCC-----------cccccCCCHHHHHhcCCCCCEEEEECCCcHHHH-HHHHHHHhhcCCCCE
Confidence 0021 012345677776655 999999999987664 555788888888988
Q ss_pred EEecCCCCCHHH---HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCe------eEE
Q psy13746 167 LSSSTSSFLPSV---LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMK------PVT 233 (294)
Q Consensus 167 i~s~tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~------~v~ 233 (294)
|++ +|+..+.. +++.+. +..+|+++.....+ ..++ .+++| ++++++++++++|+.++.+ +++
T Consensus 103 iID-~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~--~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~ 177 (493)
T PLN02350 103 IID-GGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP--SLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTY 177 (493)
T ss_pred EEE-CCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC--eEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEE
Confidence 885 45554442 333332 23334443222211 2344 45665 5899999999999999965 788
Q ss_pred Eccccccc---HHHHHHH----HHHHHHHHHHHcC-CCCHHHHHHH---HHcccCCCc
Q psy13746 234 LTTEIRGF---ALNRIQF----AVLNECYHLVHDG-VLSAKDIDRV---MSEGLGLRY 280 (294)
Q Consensus 234 v~~~~~g~---v~nri~~----a~~~Ea~~l~~~~-~~~~~~id~a---~~~g~g~~~ 280 (294)
+++.+.|. ++|+.+. ..+.|++.++++. |++++++.++ +..|.+.++
T Consensus 178 vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~ 235 (493)
T PLN02350 178 IGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESF 235 (493)
T ss_pred eCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccch
Confidence 87555553 4555553 4689999999984 9999999888 445555443
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-17 Score=151.07 Aligned_cols=168 Identities=18% Similarity=0.198 Sum_probs=125.6
Q ss_pred CccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 12 GFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 12 ~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.+++|+|| |.||+++|..|..+|++|++||+++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------------------------------------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------------------------------------------- 133 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------------------------------------
Confidence 55789999 99999999999999999999998631
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
++.++++++||+||+|+|++. ..++++++.+ +++++||+
T Consensus 134 --------------------------------------~~~~~~~~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~ 172 (374)
T PRK11199 134 --------------------------------------DRAEDILADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILV 172 (374)
T ss_pred --------------------------------------hhHHHHHhcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEE
Confidence 012345688999999999986 4688899988 89999999
Q ss_pred ecCCCCC--HHHHHhhcCCCCceeeeeecCCCCCC----CeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccH
Q psy13746 169 SSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPYFI----PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA 242 (294)
Q Consensus 169 s~tSt~~--~~~ia~~l~~~~~~ig~h~~~p~~~~----~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v 242 (294)
+++|+.. +..+.+.. +.+|+|.|||+++... ..+.+++ .++++.+++++++++.+|+++++++++.++.+
T Consensus 173 Dv~SvK~~~~~~~~~~~--~~~fvg~HPm~G~~~~~~~~~~vv~~~--~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~ 248 (374)
T PRK11199 173 DLTSVKNAPLQAMLAAH--SGPVLGLHPMFGPDVGSLAKQVVVVCD--GRQPEAYQWLLEQIQVWGARLHRISAVEHDQN 248 (374)
T ss_pred ECCCccHHHHHHHHHhC--CCCEEeeCCCCCCCCcccCCCEEEEcC--CCCchHHHHHHHHHHHCCCEEEECCHHHHHHH
Confidence 9888633 34554443 3469999999987543 3344433 47888999999999999999999987888865
Q ss_pred HHHHHH----HHHHHHHHHHHcCCCCHHHH
Q psy13746 243 LNRIQF----AVLNECYHLVHDGVLSAKDI 268 (294)
Q Consensus 243 ~nri~~----a~~~Ea~~l~~~~~~~~~~i 268 (294)
...+.. ..+.++..+.+ .+.+.+++
T Consensus 249 ~a~vshLpH~~a~al~~~l~~-~~~~~~~~ 277 (374)
T PRK11199 249 MAFIQALRHFATFAYGLHLAK-ENVDLEQL 277 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHH
Confidence 544432 23555666655 34465554
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-16 Score=167.28 Aligned_cols=191 Identities=16% Similarity=0.137 Sum_probs=146.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||.+||.+|+++||+|++|||++++.++..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~--------------------------------------- 45 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCE--------------------------------------- 45 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH---------------------------------------
Confidence 689999 999999999999999999999999988775432
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s 169 (294)
.| ....+++.+++++||+||.|+|++..++..++ ..+.+.+.++.++++
T Consensus 46 ---------------~G--------------a~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd 96 (1378)
T PLN02858 46 ---------------LG--------------GHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI 96 (1378)
T ss_pred ---------------cC--------------CeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEE
Confidence 12 23467888889999999999999987766555 457777888888874
Q ss_pred cCCCCCHHHH---HhhcCCCCceee--eeecCCC--------CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEE-c
Q psy13746 170 STSSFLPSVL---SEHSTHRSQFIV--AHPVNPP--------YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL-T 235 (294)
Q Consensus 170 ~tSt~~~~~i---a~~l~~~~~~ig--~h~~~p~--------~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v-~ 235 (294)
+||+.++.. ++.+.. .| .+|++.| ..+.+..+++| +++.+++++++|+.+|++++++ +
T Consensus 97 -~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G 168 (1378)
T PLN02858 97 -RSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLLNGKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEG 168 (1378)
T ss_pred -CCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHhcCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecC
Confidence 677777643 333321 13 4454422 23456666666 8899999999999999998875 4
Q ss_pred cccccc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 236 TEIRGF---ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 236 ~~~~g~---v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
+.+.|. ++|+++. ..+.||+.++++.|++++.+.+++..++|.+|
T Consensus 169 ~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~ 220 (1378)
T PLN02858 169 EIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSW 220 (1378)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCH
Confidence 344443 5677664 46899999999999999999999999888765
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=148.18 Aligned_cols=176 Identities=17% Similarity=0.161 Sum_probs=131.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||++||..|.++|++|.+|+++++..+.....
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~-------------------------------------- 42 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARAL-------------------------------------- 42 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHh--------------------------------------
Confidence 479999 9999999999999999999999998764432210
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhc-ccCCCeEEEec
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDI-FMSSNTILSSS 170 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii~s~ 170 (294)
..|..+ ..++++.+++++||+||+|+|++. ...+++++.+ .++++++|++.
T Consensus 43 --------------~~~~~~------------~~~~~~~~~~~~aDlVilavP~~~--~~~vl~~l~~~~l~~~~ivtDv 94 (359)
T PRK06545 43 --------------GFGVID------------ELAADLQRAAAEADLIVLAVPVDA--TAALLAELADLELKPGVIVTDV 94 (359)
T ss_pred --------------cCCCCc------------ccccCHHHHhcCCCEEEEeCCHHH--HHHHHHHHhhcCCCCCcEEEeC
Confidence 011111 134567778899999999999864 5688899987 47889998876
Q ss_pred CCCCC--HHHHHhhcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcc
Q psy13746 171 TSSFL--PSVLSEHSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTT 236 (294)
Q Consensus 171 tSt~~--~~~ia~~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~ 236 (294)
+|+.. .+.+...+.+..+|++.|||.... .+..+.+++++.++++.++.++++++.+|++++++.+
T Consensus 95 ~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~ 174 (359)
T PRK06545 95 GSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDA 174 (359)
T ss_pred ccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCH
Confidence 66532 234444445667899999997542 3456778898889999999999999999999999977
Q ss_pred cccccHHHHHHH--HHHHHHH
Q psy13746 237 EIRGFALNRIQF--AVLNECY 255 (294)
Q Consensus 237 ~~~g~v~nri~~--a~~~Ea~ 255 (294)
+.++.++..+.. .++.+++
T Consensus 175 ~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 175 EEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred HHHhHHHhHhccHHHHHHHHH
Confidence 788887776653 3455554
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=139.24 Aligned_cols=191 Identities=17% Similarity=0.150 Sum_probs=133.0
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||.+||..+++.|++|++||+++++.+++.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~---------------------------------------- 41 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK---------------------------------------- 41 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----------------------------------------
Confidence 79999 999999999999999999999999987665421
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccC---CcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| ...+.++++.+++ +|+||.|+|.+..+ +.++.++.+.++++.+|++
T Consensus 42 --------------~g--------------~~~~~s~~~~~~~~~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid 92 (299)
T PRK12490 42 --------------LG--------------ITARHSLEELVSKLEAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVD 92 (299)
T ss_pred --------------CC--------------CeecCCHHHHHHhCCCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEE
Confidence 12 2345667666555 69999999988544 4566788888888888875
Q ss_pred cCCCCCHH---HHHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCC---eeEEEccccc
Q psy13746 170 STSSFLPS---VLSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGM---KPVTLTTEIR 239 (294)
Q Consensus 170 ~tSt~~~~---~ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~---~~v~v~~~~~ 239 (294)
+|+..+. ++.+.+. +..+|+....+..+ ..+ ...++.| +++.+++++++|+.+|. +++++++.+.
T Consensus 93 -~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g-~~~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~ 167 (299)
T PRK12490 93 -GGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNG-YCLMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGPVGS 167 (299)
T ss_pred -CCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcC-CeEEecC---CHHHHHHHHHHHHHhcCcCCcEEEECCcCH
Confidence 4444433 3334332 22333332222211 123 3434444 88999999999999997 6788864333
Q ss_pred cc---HHHHHHH----HHHHHHHHHHHcCC--CCHHHHHHHHHcc-cCCC
Q psy13746 240 GF---ALNRIQF----AVLNECYHLVHDGV--LSAKDIDRVMSEG-LGLR 279 (294)
Q Consensus 240 g~---v~nri~~----a~~~Ea~~l~~~~~--~~~~~id~a~~~g-~g~~ 279 (294)
|. ++|+++. ..+.|++.++++.+ +|++++.++++.+ .+.+
T Consensus 168 a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s 217 (299)
T PRK12490 168 GHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRS 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHH
Confidence 32 5566553 46899999999998 9999999999853 3443
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=133.35 Aligned_cols=150 Identities=24% Similarity=0.293 Sum_probs=107.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||++||.+|+++||+|++|||++++.++..+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-------------------------------------- 42 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-------------------------------------- 42 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH--------------------------------------
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH--------------------------------------
Confidence 4799999 999999999999999999999999988776543
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHH--HhcccCCCeEEE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILS 168 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~--l~~~~~~~~ii~ 168 (294)
.| .+..+++.+++++||+||.|+|.+.+++ +++.+ +.+.+.++++|+
T Consensus 43 ----------------~g--------------~~~~~s~~e~~~~~dvvi~~v~~~~~v~-~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 43 ----------------AG--------------AEVADSPAEAAEQADVVILCVPDDDAVE-AVLFGENILAGLRPGKIII 91 (163)
T ss_dssp ----------------TT--------------EEEESSHHHHHHHBSEEEE-SSSHHHHH-HHHHCTTHGGGS-TTEEEE
T ss_pred ----------------hh--------------hhhhhhhhhHhhcccceEeecccchhhh-hhhhhhHHhhccccceEEE
Confidence 12 4667899999999999999999987654 56666 888899999987
Q ss_pred ecCCCCCHHH---HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEE-Ec
Q psy13746 169 SSTSSFLPSV---LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT-LT 235 (294)
Q Consensus 169 s~tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~-v~ 235 (294)
++||.+++. +++.+. +..+|+.......+ ..+.+..++.| +++.+++++++|+.+|.++++ ++
T Consensus 92 -d~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~~G 162 (163)
T PF03446_consen 92 -DMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGG---DEEAFERVRPLLEAMGKNVYHYVG 162 (163)
T ss_dssp -E-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES----HHHHHHHHHHHHHHEEEEEEE-E
T ss_pred -ecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccC---CHHHHHHHHHHHHHHhCCceeeeC
Confidence 466677663 344432 23334433222211 23556667776 789999999999999999884 44
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=141.86 Aligned_cols=210 Identities=13% Similarity=0.101 Sum_probs=148.7
Q ss_pred CCccceEEE--ccccHHHHHHHHHCC----CeEEEEeCChH-HHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEe
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAG----YKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLY 83 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G----~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 83 (294)
|+.++|+|| |.||++||..|+++| ++|++|||+++ .++.....
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~------------------------------ 50 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQK------------------------------ 50 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHh------------------------------
Confidence 556799999 999999999999998 79999999764 33332110
Q ss_pred ecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCC
Q psy13746 84 DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSS 163 (294)
Q Consensus 84 d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~ 163 (294)
.| ++.+.+..+++.+||+||.|+|++. -.+++.++.+.+++
T Consensus 51 -----------------------~g--------------~~~~~~~~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~ 91 (279)
T PRK07679 51 -----------------------YG--------------VKGTHNKKELLTDANILFLAMKPKD--VAEALIPFKEYIHN 91 (279)
T ss_pred -----------------------cC--------------ceEeCCHHHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCC
Confidence 01 2345677777889999999999765 34667888887888
Q ss_pred CeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCC-CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc-c-
Q psy13746 164 NTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR-G- 240 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~-~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~-g- 240 (294)
+++|++..++++++.+.+.+.+..++++.||+.|... ..+..+++++..+++.++.++++|+.+|.. +++. +.. .
T Consensus 92 ~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~-~~v~-e~~~~~ 169 (279)
T PRK07679 92 NQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLV-SVVE-EEDMHA 169 (279)
T ss_pred CCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcE-EEeC-HHHhhh
Confidence 8888887789999988887765567899999776544 334456677778899999999999999984 4542 221 0
Q ss_pred cH-----HHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHc---ccCCCc--CCCChhhhhccc
Q psy13746 241 FA-----LNRIQFAVLNECYH-LVHDGVLSAKDIDRVMSE---GLGLRY--AFLGPLETIHLN 292 (294)
Q Consensus 241 ~v-----~nri~~a~~~Ea~~-l~~~~~~~~~~id~a~~~---g~g~~~--~~~Gp~~~~D~~ 292 (294)
.. ... +.+.+.|++. .+.+.|+++++..+++.. |.+... ....|-++.|.+
T Consensus 170 ~~a~~Gsgpa-~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~~~v 231 (279)
T PRK07679 170 VTALSGSGPA-YIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEI 231 (279)
T ss_pred HHHhhcCHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhc
Confidence 00 011 1334556664 678889999998888776 332111 135676666654
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.1e-16 Score=147.60 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=136.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.||+++|..|..+|++|++||++++...+....
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~------------------------------------- 43 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE------------------------------------- 43 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH-------------------------------------
Confidence 378999 6999999999999999999999998765332111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| +..+++..+++.++|+||.|+|.+. ...+++++.+.++++++|++.
T Consensus 44 ----------------~g--------------v~~~~~~~e~~~~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDv 91 (437)
T PRK08655 44 ----------------LG--------------VEYANDNIDAAKDADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDV 91 (437)
T ss_pred ----------------cC--------------CeeccCHHHHhccCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEc
Confidence 11 2345677778899999999999864 357889999999999999887
Q ss_pred CCCC--CHHHHHhhcCCCCceeeeeecCCC----CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHH
Q psy13746 171 TSSF--LPSVLSEHSTHRSQFIVAHPVNPP----YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALN 244 (294)
Q Consensus 171 tSt~--~~~~ia~~l~~~~~~ig~h~~~p~----~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~n 244 (294)
+|+. ....+.+.++...+|++.|||..+ ..++.+.+++++.++++.+++++++|+.+|.++++++++.++.+.+
T Consensus 92 sSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e~HD~~~a 171 (437)
T PRK08655 92 TSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPEEHDRIMS 171 (437)
T ss_pred ccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHH
Confidence 7743 334555555555689999998754 3466788889888899999999999999999999987777776655
Q ss_pred HHHH-H---HHHHHHHHHHcCCCCHHHH
Q psy13746 245 RIQF-A---VLNECYHLVHDGVLSAKDI 268 (294)
Q Consensus 245 ri~~-a---~~~Ea~~l~~~~~~~~~~i 268 (294)
.+.. + .+..+..+ .+.+.+.++.
T Consensus 172 ~vs~lph~~a~al~~~l-~~~g~~~~~~ 198 (437)
T PRK08655 172 VVQGLTHFAYISIASTL-KRLGVDIKES 198 (437)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCHHHH
Confidence 5542 1 22333333 3445565554
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.4e-16 Score=137.24 Aligned_cols=190 Identities=13% Similarity=0.099 Sum_probs=135.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY----KVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~----~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
+||+|| |.||.+||..|+++|+ +|++| |+++++.+.+.+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~---------------------------------- 46 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS---------------------------------- 46 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH----------------------------------
Confidence 479999 9999999999999998 89999 999877654321
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
.| +..+++..++++++|+||.|++... ..+++.++.+.++++++
T Consensus 47 --------------------~g--------------~~~~~~~~e~~~~aDvVil~v~~~~--~~~vl~~l~~~~~~~~~ 90 (266)
T PLN02688 47 --------------------LG--------------VKTAASNTEVVKSSDVIILAVKPQV--VKDVLTELRPLLSKDKL 90 (266)
T ss_pred --------------------cC--------------CEEeCChHHHHhcCCEEEEEECcHH--HHHHHHHHHhhcCCCCE
Confidence 12 2345677777889999999997433 56788888887888888
Q ss_pred EEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccH---
Q psy13746 167 LSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA--- 242 (294)
Q Consensus 167 i~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v--- 242 (294)
|++.+++++++.+.+..... ++++.+|..|...+. ...++.+..++++.++.++++|+.+|. +++++.+....+
T Consensus 91 iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~ 168 (266)
T PLN02688 91 LVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGL 168 (266)
T ss_pred EEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhh
Confidence 88888889988888766543 677778877765443 334666777899999999999999999 878732111111
Q ss_pred ---HHHHHHHHHHHHH-HHHHcCCCCHHHHHHHHHccc
Q psy13746 243 ---LNRIQFAVLNECY-HLVHDGVLSAKDIDRVMSEGL 276 (294)
Q Consensus 243 ---~nri~~a~~~Ea~-~l~~~~~~~~~~id~a~~~g~ 276 (294)
...+ .+.+.|++ ..+.+.|+++++..+++..++
T Consensus 169 ~g~g~a~-~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~ 205 (266)
T PLN02688 169 SGSGPAY-IFLAIEALADGGVAAGLPRDVALSLAAQTV 205 (266)
T ss_pred hcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1111 12222322 226667889999888776543
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=136.54 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=127.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
.++|+|+ |.||+++|..+..+|+.|.+++++...-.....
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-------------------------------------- 44 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-------------------------------------- 44 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH--------------------------------------
Confidence 4688899 999999999999999988777666544222111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccCh-hhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL-RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~-~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
...|.++ +.+.+. .+++.++|+||.|+|-.. ..++++++.+.++++++|++
T Consensus 45 --------------~~lgv~d------------~~~~~~~~~~~~~aD~VivavPi~~--~~~~l~~l~~~l~~g~iv~D 96 (279)
T COG0287 45 --------------LELGVID------------ELTVAGLAEAAAEADLVIVAVPIEA--TEEVLKELAPHLKKGAIVTD 96 (279)
T ss_pred --------------hhcCccc------------ccccchhhhhcccCCEEEEeccHHH--HHHHHHHhcccCCCCCEEEe
Confidence 1123322 122332 456788999999999766 45899999999999999999
Q ss_pred cCCCCC--HHHHHhhcCCCCceeeeeecCCC--C----CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc
Q psy13746 170 STSSFL--PSVLSEHSTHRSQFIVAHPVNPP--Y----FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF 241 (294)
Q Consensus 170 ~tSt~~--~~~ia~~l~~~~~~ig~h~~~p~--~----~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~ 241 (294)
.+|+.. ++.+.+..+...+|+|+|||.++ . .+..+.+++++.++.+.++.++.+|+.+|.+++++.++.+..
T Consensus 97 v~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~ 176 (279)
T COG0287 97 VGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDR 176 (279)
T ss_pred cccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhH
Confidence 998753 33444443221279999999977 2 356788999988899999999999999999999998888888
Q ss_pred HHHHHHH
Q psy13746 242 ALNRIQF 248 (294)
Q Consensus 242 v~nri~~ 248 (294)
+...+..
T Consensus 177 ~~a~vsh 183 (279)
T COG0287 177 VMAAVSH 183 (279)
T ss_pred HHHHHHH
Confidence 7766653
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-15 Score=136.76 Aligned_cols=185 Identities=16% Similarity=0.124 Sum_probs=131.7
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||++||..|+++|++|++||+++++.+++.+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~---------------------------------------- 41 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE---------------------------------------- 41 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----------------------------------------
Confidence 79999 999999999999999999999999988765422
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccC---CcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| ....+++.+.++. +|+||.|+|.+..+ .+++..+.+.++++.++++
T Consensus 42 --------------~g--------------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid 92 (301)
T PRK09599 42 --------------EG--------------ATGADSLEELVAKLPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVID 92 (301)
T ss_pred --------------CC--------------CeecCCHHHHHhhcCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEe
Confidence 12 2344566665554 69999999987544 4566778888888888875
Q ss_pred cCCCCCHH---HHHhhcCCCCceeeeeecCCC-CC------CCeEEEecCCCCCHHHHHHHHHHHHHcCC----eeEEEc
Q psy13746 170 STSSFLPS---VLSEHSTHRSQFIVAHPVNPP-YF------IPLVEIVPAAWTSERVITRTREIMTEIGM----KPVTLT 235 (294)
Q Consensus 170 ~tSt~~~~---~ia~~l~~~~~~ig~h~~~p~-~~------~~lveiv~g~~t~~e~~~~~~~ll~~lG~----~~v~v~ 235 (294)
. |+..+. ++.+.+.. .|.+|++.| .. ..+ .++.| ++++.+++++++++.++. ++++++
T Consensus 93 ~-st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~-~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G 164 (301)
T PRK09599 93 G-GNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGY-CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAG 164 (301)
T ss_pred C-CCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCC-eEEec--CCHHHHHHHHHHHHHHcccccCCeEeEC
Confidence 4 444333 23333321 144444422 11 124 34444 489999999999999999 788997
Q ss_pred cccccc---HHHHHHH----HHHHHHHHHHHc--CCCCHHHHHHHHHccc
Q psy13746 236 TEIRGF---ALNRIQF----AVLNECYHLVHD--GVLSAKDIDRVMSEGL 276 (294)
Q Consensus 236 ~~~~g~---v~nri~~----a~~~Ea~~l~~~--~~~~~~~id~a~~~g~ 276 (294)
+.+.|. ++|+++. ..+.|++.++++ .++|++++.++++.|.
T Consensus 165 ~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~ 214 (301)
T PRK09599 165 PVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGS 214 (301)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCc
Confidence 544443 4555543 358899999999 9999999999999754
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=144.40 Aligned_cols=189 Identities=14% Similarity=0.209 Sum_probs=136.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
.+|+|| |.||++||.+|+++||+|++|||++++.++..+...+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~----------------------------------- 46 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKE----------------------------------- 46 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhh-----------------------------------
Confidence 479999 9999999999999999999999999998765442110
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhcc---CCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE---DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~---~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.| ..+..+++++++++ ++|+||.|+|....+ +.++.++.+.+.++.||+
T Consensus 47 ---------------~g------------~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iII 98 (470)
T PTZ00142 47 ---------------GN------------TRVKGYHTLEELVNSLKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIII 98 (470)
T ss_pred ---------------cC------------CcceecCCHHHHHhcCCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEE
Confidence 01 01345677877765 589999999887654 567788999999999998
Q ss_pred ecCCCCCHHH--HHhhcCCCCceeeeeecCCC-C-------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCe------eE
Q psy13746 169 SSTSSFLPSV--LSEHSTHRSQFIVAHPVNPP-Y-------FIPLVEIVPAAWTSERVITRTREIMTEIGMK------PV 232 (294)
Q Consensus 169 s~tSt~~~~~--ia~~l~~~~~~ig~h~~~p~-~-------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~------~v 232 (294)
+.+++...+. ....+. -.|.||++.+ . .+. . +++| ++++++++++++|+.++.+ +.
T Consensus 99 D~gn~~~~dt~~r~~~l~----~~Gi~fldapVSGG~~gA~~G~-~-lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~ 170 (470)
T PTZ00142 99 DGGNEWYLNTERRIKRCE----EKGILYLGMGVSGGEEGARYGP-S-LMPG--GNKEAYDHVKDILEKCSAKVGDSPCVT 170 (470)
T ss_pred ECCCCCHHHHHHHHHHHH----HcCCeEEcCCCCCCHHHHhcCC-E-EEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEE
Confidence 7665543332 222221 1255555522 2 233 3 5555 4899999999999999988 68
Q ss_pred EEccccccc---HHHHHH----HHHHHHHHHHHH-cCCCCHHHHHHHHH
Q psy13746 233 TLTTEIRGF---ALNRIQ----FAVLNECYHLVH-DGVLSAKDIDRVMS 273 (294)
Q Consensus 233 ~v~~~~~g~---v~nri~----~a~~~Ea~~l~~-~~~~~~~~id~a~~ 273 (294)
++++.+.|. ++|+.+ ...+.|++.+++ ..+++++++.+++.
T Consensus 171 ~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 171 YVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred EECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 887655553 445444 246899999998 68999999988874
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-15 Score=134.10 Aligned_cols=189 Identities=13% Similarity=0.165 Sum_probs=131.1
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||.+||..++++|++|.+||+++++++++.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~--------------------------------------- 42 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED--------------------------------------- 42 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc---------------------------------------
Confidence 79999 9999999999999999999999999887654321
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccC---hhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV---LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~---~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
|. ....+ +.+.+.++|+||.|+|.+ . .+++++++.+.++++.+|++
T Consensus 43 ---------------g~--------------~~~~s~~~~~~~~~~~dvIi~~vp~~-~-~~~v~~~l~~~l~~g~ivid 91 (298)
T TIGR00872 43 ---------------RT--------------TGVANLRELSQRLSAPRVVWVMVPHG-I-VDAVLEELAPTLEKGDIVID 91 (298)
T ss_pred ---------------CC--------------cccCCHHHHHhhcCCCCEEEEEcCch-H-HHHHHHHHHhhCCCCCEEEE
Confidence 11 11122 333456799999999997 3 45777889888988888876
Q ss_pred cCCCCCHH--HHHhhcC-CCCceeeeeecCCCC--CCCeEEEecCCCCCHHHHHHHHHHHHHcCC---eeEEEccccccc
Q psy13746 170 STSSFLPS--VLSEHST-HRSQFIVAHPVNPPY--FIPLVEIVPAAWTSERVITRTREIMTEIGM---KPVTLTTEIRGF 241 (294)
Q Consensus 170 ~tSt~~~~--~ia~~l~-~~~~~ig~h~~~p~~--~~~lveiv~g~~t~~e~~~~~~~ll~~lG~---~~v~v~~~~~g~ 241 (294)
.+++.+.+ ++...+. +..+|+..+...++. ...+..++.| +++.++.++++|+.++. ..+++++.+.|.
T Consensus 92 ~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~ 168 (298)
T TIGR00872 92 GGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG---DGEAFARAEPLFADVAPEEQGYLYCGPCGSGH 168 (298)
T ss_pred CCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC---CHHHHHHHHHHHHHhcCcCCCEEEECCccHhH
Confidence 55543222 2222332 334455544333221 1124334444 89999999999999997 467886444443
Q ss_pred ---HHHHHH-H---HHHHHHHHHHHcC--CCCHHHHHHHHHccc
Q psy13746 242 ---ALNRIQ-F---AVLNECYHLVHDG--VLSAKDIDRVMSEGL 276 (294)
Q Consensus 242 ---v~nri~-~---a~~~Ea~~l~~~~--~~~~~~id~a~~~g~ 276 (294)
++++.+ . ..+.|++.++++. ++|++++.++++.|.
T Consensus 169 ~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~ 212 (298)
T TIGR00872 169 FVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGS 212 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCc
Confidence 344443 2 4688999999996 579999999999865
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-15 Score=132.52 Aligned_cols=157 Identities=22% Similarity=0.285 Sum_probs=116.2
Q ss_pred ceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+|+|| |.||+++|..|.++|+ +|++||++++.++.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~-------------------------------------- 43 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE-------------------------------------- 43 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH--------------------------------------
Confidence 79999 9999999999999996 79999999988665432
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.|.. ....+..++ .++|+||.|+|.+. ..+++.++.+ ++++++|++.
T Consensus 44 ----------------~g~~-------------~~~~~~~~~-~~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~ 90 (275)
T PRK08507 44 ----------------LGLV-------------DEIVSFEEL-KKCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDL 90 (275)
T ss_pred ----------------CCCC-------------cccCCHHHH-hcCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEEC
Confidence 1211 112355554 46999999999875 4467788888 8889988876
Q ss_pred CCCCCHHHHHhhcC--CCCceeeeeecCC-----C-C------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcc
Q psy13746 171 TSSFLPSVLSEHST--HRSQFIVAHPVNP-----P-Y------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTT 236 (294)
Q Consensus 171 tSt~~~~~ia~~l~--~~~~~ig~h~~~p-----~-~------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~ 236 (294)
+|+. .. +.+.+. .+.+|++.||+.+ + . .++.+.+++++.++++.++.++++++.+|.+++++++
T Consensus 91 gs~k-~~-i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 91 GSTK-AK-IIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred ccch-HH-HHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 5543 22 222221 2357999999953 1 1 3557778888878999999999999999999999977
Q ss_pred cccccHHH
Q psy13746 237 EIRGFALN 244 (294)
Q Consensus 237 ~~~g~v~n 244 (294)
+.++.+..
T Consensus 169 ~~hD~~~a 176 (275)
T PRK08507 169 KEHDLHAA 176 (275)
T ss_pred HHHHHHHH
Confidence 77776443
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-15 Score=141.03 Aligned_cols=209 Identities=17% Similarity=0.160 Sum_probs=137.7
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||.++|.+|+++||+|++||+++++++...+... + +++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~---~----------------------~~e-------- 48 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKS---P----------------------IYE-------- 48 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCC---C----------------------CCC--------
Confidence 79999 999999999999999999999999999876543211 0 011
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH--------HHHHHHHHHhcccCCC
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ--------IKHQVYRAIDIFMSSN 164 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~--------~k~~~~~~l~~~~~~~ 164 (294)
..+++++.+.. ..+++++++++.+++++||+||.|+|.+.. ....+.+++.+.++++
T Consensus 49 ------~~l~~~~~~~~---------~~g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g 113 (411)
T TIGR03026 49 ------PGLDELLAKAL---------AAGRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKG 113 (411)
T ss_pred ------CCHHHHHHHhh---------hcCCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCC
Confidence 01111111110 012366778888889999999999998642 3455667888888889
Q ss_pred eEEEecCCCCCHH---HHH-hhcCC--C-----CceeeeeecCCCCCCC-------eEEEecCCCCCHHHHHHHHHHHHH
Q psy13746 165 TILSSSTSSFLPS---VLS-EHSTH--R-----SQFIVAHPVNPPYFIP-------LVEIVPAAWTSERVITRTREIMTE 226 (294)
Q Consensus 165 ~ii~s~tSt~~~~---~ia-~~l~~--~-----~~~ig~h~~~p~~~~~-------lveiv~g~~t~~e~~~~~~~ll~~ 226 (294)
++|+. .||+++. ++. ..+.+ . .-.+..+|-.. ..+. .-.++.| .+++..++++++++.
T Consensus 114 ~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~-~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~ 189 (411)
T TIGR03026 114 ATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL-REGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAP 189 (411)
T ss_pred CEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcC-CCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHH
Confidence 88874 5666544 332 22221 0 11233333211 1111 1135555 489999999999999
Q ss_pred cC-CeeEEEcccccc---cHHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHcc
Q psy13746 227 IG-MKPVTLTTEIRG---FALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEG 275 (294)
Q Consensus 227 lG-~~~v~v~~~~~g---~v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g 275 (294)
++ ..+++++....+ .++++++ .+++||+..++++.|+|++++.+++..+
T Consensus 190 ~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~~v~~~~~~~ 246 (411)
T TIGR03026 190 IIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVYEVIEAAGTD 246 (411)
T ss_pred hccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 98 577777532222 2444444 4689999999999999999999998754
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-15 Score=141.12 Aligned_cols=209 Identities=15% Similarity=0.122 Sum_probs=133.6
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||.++|.+|+++||+|++||+++++++.....+. + +++.
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~---~----------------------~~e~--- 52 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI---H----------------------IVEP--- 52 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCC---C----------------------cCCC---
Confidence 567899999 999999999999999999999999999886432110 0 0110
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcc--------hHHHHHHHHHHhcc
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEI--------LQIKHQVYRAIDIF 160 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~--------~~~k~~~~~~l~~~ 160 (294)
.++ +.+.+.++.| ++..+++ +++||+||.|+|.+ +.....+.+++.++
T Consensus 53 ~l~-------~~l~~~~~~g-------------~l~~~~~----~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~ 108 (415)
T PRK11064 53 DLD-------MVVKTAVEGG-------------YLRATTT----PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPV 108 (415)
T ss_pred CHH-------HHHHHHhhcC-------------ceeeecc----cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHh
Confidence 111 1122222222 2444443 35899999999985 23445667889999
Q ss_pred cCCCeEEEecCCCCCHHH---HHhhcC-CCCc--e-------eeeee-cCCC--CCC-------CeEEEecCCCCCHHHH
Q psy13746 161 MSSNTILSSSTSSFLPSV---LSEHST-HRSQ--F-------IVAHP-VNPP--YFI-------PLVEIVPAAWTSERVI 217 (294)
Q Consensus 161 ~~~~~ii~s~tSt~~~~~---ia~~l~-~~~~--~-------ig~h~-~~p~--~~~-------~lveiv~g~~t~~e~~ 217 (294)
++++++|+ ..||+++.. +...+. .... + ...+. ++|. ..+ ....++.| .+++.+
T Consensus 109 l~~g~iVI-~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~ 185 (415)
T PRK11064 109 LKKGDLVI-LESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCS 185 (415)
T ss_pred CCCCCEEE-EeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHH
Confidence 99999887 456655543 322221 1000 0 00011 2341 112 22246655 488999
Q ss_pred HHHHHHHHHcCCeeEEEcccccc---cHHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHc
Q psy13746 218 TRTREIMTEIGMKPVTLTTEIRG---FALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSE 274 (294)
Q Consensus 218 ~~~~~ll~~lG~~~v~v~~~~~g---~v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~ 274 (294)
++++++++.++..+++++.-..+ .++++++ .+++||+..++++.|+|+.++.+++..
T Consensus 186 ~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~ 249 (415)
T PRK11064 186 ARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWELIRLANR 249 (415)
T ss_pred HHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcc
Confidence 99999999999887777532222 2444444 358999999999999999999888753
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=139.71 Aligned_cols=197 Identities=20% Similarity=0.233 Sum_probs=134.3
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
.|+|| |.||++||.+|+++|++|++|||++++.+++.+...
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~------------------------------------- 43 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHA------------------------------------- 43 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhcc-------------------------------------
Confidence 48999 999999999999999999999999998776543100
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhh---ccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC---LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a---~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| ..+....++++. ++.+|+||.|+|....+ .+++.++.+++.++.||++
T Consensus 44 --------------~g------------~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID 96 (467)
T TIGR00873 44 --------------KG------------KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIID 96 (467)
T ss_pred --------------CC------------CCceecCCHHHHHhhcCCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEE
Confidence 01 001233444443 45799999999997654 4577889899999999887
Q ss_pred cCCCCCHHH--HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCee------EEEccc
Q psy13746 170 STSSFLPSV--LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKP------VTLTTE 237 (294)
Q Consensus 170 ~tSt~~~~~--ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~------v~v~~~ 237 (294)
.+++.+.+. ..+.+. +..+|+++.....+ ..+. .++.| ++++++++++++|+.++.++ .++++.
T Consensus 97 ~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~--~im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~ 172 (467)
T TIGR00873 97 GGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP--SIMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPD 172 (467)
T ss_pred CCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC--cCCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCc
Confidence 665543332 222222 33344444333222 1233 45555 58999999999999999873 788765
Q ss_pred cccc---HHHHHH----HHHHHHHHHHHH-cCCCCHHHHHHHHH---cccCCC
Q psy13746 238 IRGF---ALNRIQ----FAVLNECYHLVH-DGVLSAKDIDRVMS---EGLGLR 279 (294)
Q Consensus 238 ~~g~---v~nri~----~a~~~Ea~~l~~-~~~~~~~~id~a~~---~g~g~~ 279 (294)
+.|. ++|+.+ ...+.|++.+++ +.+++++++..++. .+.+.+
T Consensus 173 GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S 225 (467)
T TIGR00873 173 GAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDS 225 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccc
Confidence 5553 455544 246899999985 68999999988883 444444
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=129.14 Aligned_cols=189 Identities=13% Similarity=0.110 Sum_probs=134.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCC---CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG---YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G---~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
+++|+|| |.||+.+|..+.++| ++|.+||++++..+++.+..
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~--------------------------------- 48 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY--------------------------------- 48 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc---------------------------------
Confidence 3589999 999999999999999 78999999988765443210
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
| +..+.+..+.+.++|+||.|+|... -.++++++.+.+ +++|
T Consensus 49 --------------------g--------------~~~~~~~~~~~~~advVil~v~~~~--~~~v~~~l~~~~--~~~v 90 (267)
T PRK11880 49 --------------------G--------------VRAATDNQEAAQEADVVVLAVKPQV--MEEVLSELKGQL--DKLV 90 (267)
T ss_pred --------------------C--------------CeecCChHHHHhcCCEEEEEcCHHH--HHHHHHHHHhhc--CCEE
Confidence 1 2334566667889999999998754 457778877766 4566
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-ccccccHHH-
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLT-TEIRGFALN- 244 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~-~~~~g~v~n- 244 (294)
++.+++++.+.++..++++.+++..||..|...+. ...++++..++++..+.++.+|+.+|. ++++. .+....+..
T Consensus 91 vs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~-~~~~~~e~~~d~~~a~ 169 (267)
T PRK11880 91 VSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGK-VVWVDDEKQMDAVTAV 169 (267)
T ss_pred EEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCe-EEEECChHhcchHHHH
Confidence 67888888888888776566889999988865544 344677878899999999999999997 45553 222222111
Q ss_pred -----HHHHHHHHHHH-HHHHcCCCCHHHHHHHHHc
Q psy13746 245 -----RIQFAVLNECY-HLVHDGVLSAKDIDRVMSE 274 (294)
Q Consensus 245 -----ri~~a~~~Ea~-~l~~~~~~~~~~id~a~~~ 274 (294)
..+.. +.|++ ....+.|+++++..+++..
T Consensus 170 ~~~~pa~~~~-~~~~~~~~~~~~Gl~~~~a~~~~~~ 204 (267)
T PRK11880 170 SGSGPAYVFL-FIEALADAGVKLGLPREQARKLAAQ 204 (267)
T ss_pred hcChHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12222 33444 4456577888886655443
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-14 Score=131.98 Aligned_cols=167 Identities=20% Similarity=0.197 Sum_probs=123.8
Q ss_pred CccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.+++|+|| |.||.++|..|...|+ +|++||++++.++.+.+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----------------------------------- 49 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----------------------------------- 49 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------------------------------
Confidence 35789999 9999999999999995 89999999987665432
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.|.. .....+..+++++||+||.|+|... ...+++++.+.++++++|
T Consensus 50 -------------------~g~~------------~~~~~~~~~~~~~aDvViiavp~~~--~~~v~~~l~~~l~~~~iv 96 (307)
T PRK07502 50 -------------------LGLG------------DRVTTSAAEAVKGADLVILCVPVGA--SGAVAAEIAPHLKPGAIV 96 (307)
T ss_pred -------------------CCCC------------ceecCCHHHHhcCCCEEEECCCHHH--HHHHHHHHHhhCCCCCEE
Confidence 1211 1123456667899999999999864 457788888888899888
Q ss_pred EecCCCCCHH---HHHhhcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeE
Q psy13746 168 SSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 232 (294)
Q Consensus 168 ~s~tSt~~~~---~ia~~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v 232 (294)
++.+| .... .+...+....+|++.||+.+.. .+..+.+++...++++.++.++++++.+|.+++
T Consensus 97 ~dvgs-~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~ 175 (307)
T PRK07502 97 TDVGS-VKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVE 175 (307)
T ss_pred EeCcc-chHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 76544 3333 2333334445899999998542 134556777777889999999999999999999
Q ss_pred EEcccccccHHHHHH
Q psy13746 233 TLTTEIRGFALNRIQ 247 (294)
Q Consensus 233 ~v~~~~~g~v~nri~ 247 (294)
+++++.++.+...+.
T Consensus 176 ~~~~~~hD~~~A~~s 190 (307)
T PRK07502 176 EMDPEHHDLVLAITS 190 (307)
T ss_pred EcCHHHHhHHHHHHh
Confidence 987777776555544
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=154.80 Aligned_cols=194 Identities=15% Similarity=0.165 Sum_probs=143.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
.++|+|| |.||.+||.+|+.+|++|++||+++++.++..+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-------------------------------------- 365 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFEN-------------------------------------- 365 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------------------------------------
Confidence 4789999 999999999999999999999999988765422
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH--HHhcccCCCeEEE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILS 168 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~ 168 (294)
.| ....+++.+++++||+||.|+|.+..++..++. .+.+.+.++.+++
T Consensus 366 ----------------~G--------------a~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivV 415 (1378)
T PLN02858 366 ----------------AG--------------GLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIV 415 (1378)
T ss_pred ----------------cC--------------CeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEE
Confidence 12 123567778889999999999988776655543 4666677888887
Q ss_pred ecCCCCCHHH---HHhhcCCCCceeeeeecCCC--------CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcc-
Q psy13746 169 SSTSSFLPSV---LSEHSTHRSQFIVAHPVNPP--------YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTT- 236 (294)
Q Consensus 169 s~tSt~~~~~---ia~~l~~~~~~ig~h~~~p~--------~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~- 236 (294)
++||+++.. +++.+.. .-.|.+|++.| ..+.+..++.| +++.+++++++|+.+|++++++++
T Consensus 416 -d~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~ 489 (1378)
T PLN02858 416 -LSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAMGTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGG 489 (1378)
T ss_pred -ECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhcCCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCC
Confidence 467777664 3333321 01355555532 23445556665 789999999999999998887532
Q ss_pred ccccc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 237 EIRGF---ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 237 ~~~g~---v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
.+.|. ++|+++. +.++|++.++++.|+|++.+.+++..+.|.+|
T Consensus 490 ~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~ 540 (1378)
T PLN02858 490 CGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSW 540 (1378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCh
Confidence 23332 5676653 46899999999999999999999998888665
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-15 Score=138.52 Aligned_cols=202 Identities=16% Similarity=0.139 Sum_probs=127.2
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
||+|| |+||.++|..++. ||+|++||+++++++++.+.+.. . ++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~---~----------------------~e-------- 47 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISP---I----------------------VD-------- 47 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCC---C----------------------CC--------
Confidence 79999 9999999988875 99999999999999887654320 0 00
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHH---------HHHHHHHhcccCC
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIK---------HQVYRAIDIFMSS 163 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k---------~~~~~~l~~~~~~ 163 (294)
..+++++.++ ..+++.+.+..+++++||+||+|+|++++.| ..+++++.+ +++
T Consensus 48 ------~~l~~~l~~~-----------~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~ 109 (388)
T PRK15057 48 ------KEIQQFLQSD-----------KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INP 109 (388)
T ss_pred ------cCHHHHHHhC-----------CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCC
Confidence 1122222211 1235666777778899999999999875332 455577776 577
Q ss_pred CeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCC--CCe-------EEEecCCCCCHHHHHHHHHHHHH--cCCeeE
Q psy13746 164 NTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF--IPL-------VEIVPAAWTSERVITRTREIMTE--IGMKPV 232 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~--~~l-------veiv~g~~t~~e~~~~~~~ll~~--lG~~~v 232 (294)
+++|+ ..||+++....+.... ..-.+..| +|... +.. -.++.| .+++..+++.+++.. ++..+.
T Consensus 110 g~lVV-~~STv~pgtt~~l~~~-~~~~~v~~-~PE~l~~G~a~~d~~~p~rvv~G--~~~~~~~~~~~~l~~~~~~~~~~ 184 (388)
T PRK15057 110 YAVMV-IKSTVPVGFTAAMHKK-YRTENIIF-SPEFLREGKALYDNLHPSRIVIG--ERSERAERFAALLQEGAIKQNIP 184 (388)
T ss_pred CCEEE-EeeecCCchHHHHHHH-hhcCcEEE-CcccccCCcccccccCCCEEEEE--cCcHHHHHHHHHHHhhhhcCCCc
Confidence 88776 4677766643332211 00112222 44321 222 124444 245667788888854 565443
Q ss_pred -EEcccccc----cHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 233 -TLTTEIRG----FALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 233 -~v~~~~~g----~v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
+++.-..+ ++.|.++ .+++||+..++++.|+|+.++.+++.
T Consensus 185 ~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~ 233 (388)
T PRK15057 185 TLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVC 233 (388)
T ss_pred eeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence 45322222 3444443 36899999999999999999999985
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-14 Score=129.65 Aligned_cols=167 Identities=18% Similarity=0.105 Sum_probs=121.8
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
++..++|+|| |.||+++|..+.+.|++|++||+++.. +.+.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~----------------------------------- 76 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAE----------------------------------- 76 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHH-----------------------------------
Confidence 4456789999 999999999999999999999999632 11110
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhc-cCCcEEEEcCCcchHHHHHHHHHH-hcccCCCe
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL-EDAIFIQESVPEILQIKHQVYRAI-DIFMSSNT 165 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~-~~aDlVieavpe~~~~k~~~~~~l-~~~~~~~~ 165 (294)
.| +...++.++++ .++|+||.|+|... ..+++.++ ...+++++
T Consensus 77 -------------------~g--------------v~~~~~~~e~~~~~aDvVilavp~~~--~~~vl~~l~~~~l~~~~ 121 (304)
T PLN02256 77 -------------------LG--------------VSFFRDPDDFCEEHPDVVLLCTSILS--TEAVLRSLPLQRLKRST 121 (304)
T ss_pred -------------------cC--------------CeeeCCHHHHhhCCCCEEEEecCHHH--HHHHHHhhhhhccCCCC
Confidence 12 12345666555 47999999999753 45777887 56688999
Q ss_pred EEEecCCC--CCHHHHHhhcCCCCceeeeeecCCCCCC------CeEEEecC----CCCCHHHHHHHHHHHHHcCCeeEE
Q psy13746 166 ILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPPYFI------PLVEIVPA----AWTSERVITRTREIMTEIGMKPVT 233 (294)
Q Consensus 166 ii~s~tSt--~~~~~ia~~l~~~~~~ig~h~~~p~~~~------~lveiv~g----~~t~~e~~~~~~~ll~~lG~~~v~ 233 (294)
+|++.+|+ ...+.+.+.++...+|+++|||.++..+ ..+.+.+. +.++++.++.++++++.+|.+++.
T Consensus 122 iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~ 201 (304)
T PLN02256 122 LFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGCRMVE 201 (304)
T ss_pred EEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 99988884 3455666666555579999999987542 22222221 457889999999999999999999
Q ss_pred EcccccccHHHHHH
Q psy13746 234 LTTEIRGFALNRIQ 247 (294)
Q Consensus 234 v~~~~~g~v~nri~ 247 (294)
+.++.+..++..+.
T Consensus 202 ~~~eeHD~~vA~iS 215 (304)
T PLN02256 202 MSCEEHDRYAAGSQ 215 (304)
T ss_pred eCHHHHhHHHHhhh
Confidence 98788776554443
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-14 Score=129.62 Aligned_cols=184 Identities=14% Similarity=0.130 Sum_probs=129.3
Q ss_pred cccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHH
Q psy13746 21 LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHT 100 (294)
Q Consensus 21 ~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 100 (294)
+=|.+||.+|+++||+|++||++++.++... .
T Consensus 30 ~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~--~---------------------------------------------- 61 (342)
T PRK12557 30 YGGSRMAIEFAEAGHDVVLAEPNRSILSEEL--W---------------------------------------------- 61 (342)
T ss_pred cCHHHHHHHHHhCCCeEEEEECCHHHhhHHH--H----------------------------------------------
Confidence 3489999999999999999999998654311 0
Q ss_pred HHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHH-
Q psy13746 101 LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL- 179 (294)
Q Consensus 101 l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~i- 179 (294)
+.+...| ++++++..+++++||+||.|+|... ..+.++.++.+.++++++|++ +|+.++..+
T Consensus 62 -~~l~~~G--------------i~~asd~~eaa~~ADvVIlaVP~~~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s 124 (342)
T PRK12557 62 -KKVEDAG--------------VKVVSDDAEAAKHGEIHILFTPFGK-KTVEIAKNILPHLPENAVICN-TCTVSPVVLY 124 (342)
T ss_pred -HHHHHCC--------------CEEeCCHHHHHhCCCEEEEECCCcH-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHH
Confidence 0111122 3556677778899999999999865 345777889999999998874 566665543
Q ss_pred ---HhhcCCCCceeeeeecCCCCC----CCeEEEecCC------CCCHHHHHHHHHHHHHcCCeeEEEccccccc---HH
Q psy13746 180 ---SEHSTHRSQFIVAHPVNPPYF----IPLVEIVPAA------WTSERVITRTREIMTEIGMKPVTLTTEIRGF---AL 243 (294)
Q Consensus 180 ---a~~l~~~~~~ig~h~~~p~~~----~~lveiv~g~------~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~---v~ 243 (294)
++.+..+.+.+|.||++|... ...++++.+. ..+++.+++++++|+.+|+++++++ ...+. ..
T Consensus 125 ~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~ 203 (342)
T PRK12557 125 YSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADM 203 (342)
T ss_pred HHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHH
Confidence 344443445667777765421 2234444432 2488999999999999999998885 33333 35
Q ss_pred HHHHH----HHHHHHHHHHHcCCCCHHHHHH
Q psy13746 244 NRIQF----AVLNECYHLVHDGVLSAKDIDR 270 (294)
Q Consensus 244 nri~~----a~~~Ea~~l~~~~~~~~~~id~ 270 (294)
|+++. +.+.|++.++++.+.++.++.+
T Consensus 204 ~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~ 234 (342)
T PRK12557 204 GSLVTAVALSGVLDYYSVGTKIIKAPKEMIE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55554 4688999999999988888654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-14 Score=126.32 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=110.1
Q ss_pred HHHHHHHCC--CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHHHHH
Q psy13746 26 WAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQD 103 (294)
Q Consensus 26 iA~~~~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~l~~ 103 (294)
||+.|.++| ++|++||++++.++.+.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~--------------------------------------------------- 29 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE--------------------------------------------------- 29 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH---------------------------------------------------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH---------------------------------------------------
Confidence 678899999 799999999998776543
Q ss_pred HHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCC--HHHHHh
Q psy13746 104 YHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSE 181 (294)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~--~~~ia~ 181 (294)
.|..+ ...++ .++++++|+||.|+|... ..++++++.++++++++|++.+|+.. ...+.+
T Consensus 30 ---~g~~~------------~~~~~-~~~~~~~DlvvlavP~~~--~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~ 91 (258)
T PF02153_consen 30 ---LGIID------------EASTD-IEAVEDADLVVLAVPVSA--IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMER 91 (258)
T ss_dssp ---TTSSS------------EEESH-HHHGGCCSEEEE-S-HHH--HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHH
T ss_pred ---CCCee------------eccCC-HhHhcCCCEEEEcCCHHH--HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHH
Confidence 24332 12333 457999999999999765 56899999999999999998888642 334555
Q ss_pred hcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHH
Q psy13746 182 HSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 246 (294)
Q Consensus 182 ~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri 246 (294)
.++...+|+|.|||.++. .++.+.+++++.++++.++.++.|++.+|.+++.+.++.+..+...+
T Consensus 92 ~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~eeHD~~~A~v 168 (258)
T PF02153_consen 92 LLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMDAEEHDRIMAYV 168 (258)
T ss_dssp HHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--HHHHHHHHHHH
T ss_pred hcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcCHHHHHHHHHHH
Confidence 555567999999999762 36788899998889999999999999999999999777777655444
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=123.78 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=121.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
++|+|| |.||.+||..|.++|+ +|++||+++++++.+.+.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~---------------------------------- 48 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK---------------------------------- 48 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------------------------------
Confidence 379999 9999999999999885 699999999886654321
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.| +..+++..+.+.+||+||.|+|++. -.++++++.+.++++++|
T Consensus 49 -------------------~g--------------~~~~~~~~e~~~~aDiIiLavkP~~--~~~vl~~l~~~~~~~~lv 93 (272)
T PRK12491 49 -------------------YG--------------ITITTNNNEVANSADILILSIKPDL--YSSVINQIKDQIKNDVIV 93 (272)
T ss_pred -------------------cC--------------cEEeCCcHHHHhhCCEEEEEeChHH--HHHHHHHHHHhhcCCcEE
Confidence 01 2334566667889999999999633 567888998888888999
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEE-EecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE-IVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lve-iv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
+|...+++++.+++.++.+.+++...|..|...+..+. +..++..+++..+.++.+|+.+|.. +++
T Consensus 94 ISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~-~~~ 160 (272)
T PRK12491 94 VTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQT-EVV 160 (272)
T ss_pred EEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCE-EEE
Confidence 99999999999999886556788999988876665444 5577778899999999999999986 565
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-13 Score=131.12 Aligned_cols=187 Identities=20% Similarity=0.230 Sum_probs=131.4
Q ss_pred ccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHHH
Q psy13746 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTL 101 (294)
Q Consensus 22 mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~l 101 (294)
||+.||.+|+++||+|.+|||++++.++..+.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~------------------------------------------------ 32 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE------------------------------------------------ 32 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh------------------------------------------------
Confidence 89999999999999999999999988765431
Q ss_pred HHHHhccccCCCCChhhhccCeeeccChhhhccC---CcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHH-
Q psy13746 102 QDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS- 177 (294)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~- 177 (294)
.|. + ..+....+++++++. +|+||.|+|....+ .+++.++.+.+.++.||++.+.+.+.+
T Consensus 33 -----~g~--~--------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t 96 (459)
T PRK09287 33 -----EGK--G--------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDT 96 (459)
T ss_pred -----hCC--C--------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHH
Confidence 010 0 114556788877664 89999999998765 456688889999999888654433322
Q ss_pred -HHHhhcCCCCceeeeeecCC-CC-------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCee-------EEEccccccc
Q psy13746 178 -VLSEHSTHRSQFIVAHPVNP-PY-------FIPLVEIVPAAWTSERVITRTREIMTEIGMKP-------VTLTTEIRGF 241 (294)
Q Consensus 178 -~ia~~l~~~~~~ig~h~~~p-~~-------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~-------v~v~~~~~g~ 241 (294)
+.++.+. -.|.||+.. .. .+. .+++| ++++++++++++|+.++.++ .++++.+.|.
T Consensus 97 ~~~~~~l~----~~Gi~fvdapVSGG~~gA~~G~--siM~G--G~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh 168 (459)
T PRK09287 97 IRREKELA----EKGIHFIGMGVSGGEEGALHGP--SIMPG--GQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGH 168 (459)
T ss_pred HHHHHHHH----hcCCeEEecCCCCCHHHHhcCC--EEEEe--CCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHH
Confidence 2223332 124555542 22 233 45555 48999999999999999887 8887655553
Q ss_pred ---HHHHHH----HHHHHHHHHHHHc-CCCCHHHHHHHHH---cccCCCc
Q psy13746 242 ---ALNRIQ----FAVLNECYHLVHD-GVLSAKDIDRVMS---EGLGLRY 280 (294)
Q Consensus 242 ---v~nri~----~a~~~Ea~~l~~~-~~~~~~~id~a~~---~g~g~~~ 280 (294)
++|+.+ ...+.|++.++++ .+++++++.+++. .|.+.+|
T Consensus 169 ~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~ 218 (459)
T PRK09287 169 YVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSY 218 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccCh
Confidence 455554 2468999999994 7999999988884 5555443
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-15 Score=141.46 Aligned_cols=90 Identities=24% Similarity=0.290 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccCCC
Q psy13746 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLR 279 (294)
Q Consensus 200 ~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~ 279 (294)
..+.+||+++..|++++++.+.+++..+|+.|+.+ +|.|||+.||++.+++|||++++++|.++++|||.+++.|+|||
T Consensus 376 ~~~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v-~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P 454 (503)
T TIGR02279 376 TGKRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQI-ADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYP 454 (503)
T ss_pred ccCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe-CCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Confidence 44789999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhcccC
Q psy13746 280 YAFLGPLETIHLNS 293 (294)
Q Consensus 280 ~~~~Gp~~~~D~~~ 293 (294)
+|||+|+|.+|
T Consensus 455 ---~GP~~~~D~~G 465 (503)
T TIGR02279 455 ---YGPLAWAAQLG 465 (503)
T ss_pred ---cCHHHHHHHhC
Confidence 89999999988
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.6e-14 Score=129.80 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=114.8
Q ss_pred cceEEE---ccccHHHHHHHHH-CCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII---GLIGQAWAMIFAS-AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~-~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
++|+|| |.||+++|..|.+ .|++|+++|++.+.
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~------------------------------------------- 41 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG------------------------------------------- 41 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-------------------------------------------
Confidence 689999 8999999999997 48999999985210
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcc---cCCCeE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF---MSSNTI 166 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~---~~~~~i 166 (294)
..++.+.+++||+||.|+|... ..++++++.++ ++++++
T Consensus 42 ------------------------------------~~~~~~~v~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~i 83 (370)
T PRK08818 42 ------------------------------------SLDPATLLQRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQL 83 (370)
T ss_pred ------------------------------------cCCHHHHhcCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeE
Confidence 1345567899999999999876 45788888775 789999
Q ss_pred EEecCCCCCHHHHHhhcCCCCceeeeeecCCCCC-----CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc
Q psy13746 167 LSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-----IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF 241 (294)
Q Consensus 167 i~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~-----~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~ 241 (294)
|++.+|+.. .-+........+|+|+|||.++.. ++.+.++++ ..++.+++++.+++.+|.+++.+.++.|..
T Consensus 84 VtDVgSvK~-~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~ 160 (370)
T PRK08818 84 WLDVTSIKQ-APVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEA--RLQHWSPWVQSLCSALQAECVYATPEHHDR 160 (370)
T ss_pred EEECCCCcH-HHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCC--CchhHHHHHHHHHHHcCCEEEEcCHHHHHH
Confidence 999888763 222222333457999999997753 556667766 455568899999999999999998888887
Q ss_pred HHHHH
Q psy13746 242 ALNRI 246 (294)
Q Consensus 242 v~nri 246 (294)
+...+
T Consensus 161 ~~A~v 165 (370)
T PRK08818 161 VMALV 165 (370)
T ss_pred HHHHH
Confidence 66666
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-13 Score=124.17 Aligned_cols=208 Identities=18% Similarity=0.194 Sum_probs=140.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
|||+|+ |++|...|.+|+..||+|+.+|+++++++.....+. |.| |
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~---PI~----------------------E------- 48 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGIS---PIY----------------------E------- 48 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCC---CCc----------------------C-------
Confidence 589999 999999999999999999999999999997765432 222 2
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch--------HHHHHHHHHHhcccCC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL--------QIKHQVYRAIDIFMSS 163 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~--------~~k~~~~~~l~~~~~~ 163 (294)
..|+++++++..+ +|+++|+|++++++++|++|.|+|.+. .....+.+++.++++.
T Consensus 49 -------pgLe~ll~~~~~~---------gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~ 112 (414)
T COG1004 49 -------PGLEELLKENLAS---------GRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDG 112 (414)
T ss_pred -------ccHHHHHHhcccc---------CcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCC
Confidence 4466666655333 458999999999999999999998843 3456677889998888
Q ss_pred CeEEEecCCCCCHHH---HHhhcC--CCCceeeeeecCCCC--C--------CCeEEEecCCCCCHHHHHHHHHHHHHc-
Q psy13746 164 NTILSSSTSSFLPSV---LSEHST--HRSQFIVAHPVNPPY--F--------IPLVEIVPAAWTSERVITRTREIMTEI- 227 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~---ia~~l~--~~~~~ig~h~~~p~~--~--------~~lveiv~g~~t~~e~~~~~~~ll~~l- 227 (294)
.++|+ +-||+++.. +.+.+. .+.+-++. -+||.. . .+-- |+-|. .++++.+.++++++..
T Consensus 113 ~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v-~~NPEFLREG~Av~D~~~PdR-IViG~-~~~~a~~~~~ely~~~~ 188 (414)
T COG1004 113 KAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEV-ASNPEFLREGSAVYDFLYPDR-IVIGV-RSERAAAVLRELYAPFL 188 (414)
T ss_pred CeEEE-EcCCCCCCchHHHHHHHHhhcccCCceE-ecChHHhcCcchhhhccCCCe-EEEcc-CChhHHHHHHHHHhhhh
Confidence 77766 578887663 222221 11111111 122321 0 1111 44443 2444667777777665
Q ss_pred -CCeeEEEcc-cc---cccHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 228 -GMKPVTLTT-EI---RGFALNRIQF---AVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 228 -G~~~v~v~~-~~---~g~v~nri~~---a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
...|+.++. .. -.+..|.+++ +++||...+|++.++|.++|.+.+.
T Consensus 189 ~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~~gIG 242 (414)
T COG1004 189 RQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQVAEGIG 242 (414)
T ss_pred hcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcC
Confidence 334444432 22 2456787775 5899999999999999999988753
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-13 Score=128.65 Aligned_cols=203 Identities=16% Similarity=0.206 Sum_probs=131.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||.++|.+|++ ||+|++||+++++++...+... .+++.
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~-------------------------~~~e~------ 54 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVD-------------------------VNLET------ 54 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCC-------------------------CCCCC------
Confidence 689999 9999999999877 6999999999999887652211 01111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch--------HHHHHHHHHHhcccCC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL--------QIKHQVYRAIDIFMSS 163 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~--------~~k~~~~~~l~~~~~~ 163 (294)
.++++.+. +++.++++.+ ++++||++|.|+|.+. .......+.|.+++++
T Consensus 55 --------~~~~l~~~-------------g~l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~ 112 (425)
T PRK15182 55 --------TEEELREA-------------RYLKFTSEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNR 112 (425)
T ss_pred --------CHHHHHhh-------------CCeeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCC
Confidence 11122212 2356677776 6899999999999763 2222334678888898
Q ss_pred CeEEEecCCCCCHHHHHh----hcCC--C----CceeeeeecCCCC---------CCCeEEEecCCCCCHHHHHHHHHHH
Q psy13746 164 NTILSSSTSSFLPSVLSE----HSTH--R----SQFIVAHPVNPPY---------FIPLVEIVPAAWTSERVITRTREIM 224 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~ia~----~l~~--~----~~~ig~h~~~p~~---------~~~lveiv~g~~t~~e~~~~~~~ll 224 (294)
+.+|+ ..||+++....+ .+.. . ..|.-.| +|.. ...+-.++.| .+++..+.+++++
T Consensus 113 g~lVI-~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~--~PE~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly 187 (425)
T PRK15182 113 GDIVV-YESTVYPGCTEEECVPILARMSGMTFNQDFYVGY--SPERINPGDKKHRLTNIKKITSG--STAQIAELIDEVY 187 (425)
T ss_pred CCEEE-EecCCCCcchHHHHHHHHHhccCCCcCCCeeEee--CCCcCCCCcccccccCCCeEEEC--CCHHHHHHHHHHH
Confidence 88876 456666553322 2211 1 1111111 2221 1123346667 3678889999999
Q ss_pred HHcC-CeeEEEcccccc---cHHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHcc
Q psy13746 225 TEIG-MKPVTLTTEIRG---FALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEG 275 (294)
Q Consensus 225 ~~lG-~~~v~v~~~~~g---~v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g 275 (294)
+.+. ..+++++.-..+ .++|+++ .+++||+..++++.|+|+.++.+++...
T Consensus 188 ~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~ 246 (425)
T PRK15182 188 QQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK 246 (425)
T ss_pred HHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC
Confidence 9986 345666422222 2455554 3689999999999999999999986544
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=133.48 Aligned_cols=163 Identities=21% Similarity=0.259 Sum_probs=123.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
+++|+|| |.||.++|..+.+.| ++|++||+++++++.+.+
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~------------------------------------ 46 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS------------------------------------ 46 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH------------------------------------
Confidence 5789999 999999999999999 489999999988665432
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.|..+ ...+++.++++++|+||+|+|.+. ..++++++.++++++++|+
T Consensus 47 ------------------~g~~~------------~~~~~~~~~~~~aDvVilavp~~~--~~~vl~~l~~~~~~~~ii~ 94 (735)
T PRK14806 47 ------------------LGVID------------RGEEDLAEAVSGADVIVLAVPVLA--MEKVLADLKPLLSEHAIVT 94 (735)
T ss_pred ------------------CCCCC------------cccCCHHHHhcCCCEEEECCCHHH--HHHHHHHHHHhcCCCcEEE
Confidence 12110 123466677899999999999763 5788899998888888887
Q ss_pred ecCCCC--CHHHHHhhcC-CCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q psy13746 169 SSTSSF--LPSVLSEHST-HRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT 233 (294)
Q Consensus 169 s~tSt~--~~~~ia~~l~-~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~ 233 (294)
+.+|+. ....+.+.+. .+.||++.|||.... .++.+.++++..++++.++.++++++.+|.++++
T Consensus 95 d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~ 174 (735)
T PRK14806 95 DVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLH 174 (735)
T ss_pred EcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 655532 2445555543 357899999987432 2456678888888999999999999999999999
Q ss_pred EcccccccHH
Q psy13746 234 LTTEIRGFAL 243 (294)
Q Consensus 234 v~~~~~g~v~ 243 (294)
++.+.++.+.
T Consensus 175 ~~~~~hD~~~ 184 (735)
T PRK14806 175 MDVAHHDEVL 184 (735)
T ss_pred cCHHHHhHHH
Confidence 8656666543
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-12 Score=118.27 Aligned_cols=198 Identities=20% Similarity=0.242 Sum_probs=128.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.||..|+++|++|++||++++.++...+...+ ..|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~------------------------------ 49 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADREN--PRY------------------------------ 49 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcc--ccc------------------------------
Confidence 589999 9999999999999999999999999887765432100 000
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
+ .+ .....+++.++++.++++++|+||.|+|.. ....++.++.+.+++++++++.+
T Consensus 50 ---------~-----~~--------~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 50 ---------L-----PG--------IKLPDNLRATTDLAEALADADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred ---------C-----CC--------CcCCCCeEEeCCHHHHHhCCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEe
Confidence 0 00 000112455677877789999999999985 35678888988888888887766
Q ss_pred CCCCHH-------HHHhhcCCCCceeeeeecC-CCC-----CC-CeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 172 SSFLPS-------VLSEHSTHRSQFIVAHPVN-PPY-----FI-PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 172 St~~~~-------~ia~~l~~~~~~ig~h~~~-p~~-----~~-~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
.++.++ .+++.+.. +....++. |.. .+ ....++.+ .+.+.++++.++|+..|.++.+. .+
T Consensus 106 ngv~~~~~~~~~~~l~~~~~~---~~~~~~~~~P~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~-~d 179 (325)
T PRK00094 106 KGIEPGTGKLLSEVLEEELPD---LAPIAVLSGPSFAKEVARGLPTAVVIAS--TDEELAERVQELFHSPYFRVYTN-TD 179 (325)
T ss_pred ecccCCCCCcHHHHHHHHcCC---CCceEEEECccHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCCEEEEec-CC
Confidence 565542 22222211 01111222 221 11 12223333 37888999999999999877665 34
Q ss_pred cccc---------------------HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 238 IRGF---------------------ALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 238 ~~g~---------------------v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
..|. +.|+.+ ...++|++.++++.|++++.+...+.
T Consensus 180 ~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~ 240 (325)
T PRK00094 180 VIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAG 240 (325)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccH
Confidence 3221 122222 34689999999999999999977643
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-12 Score=113.65 Aligned_cols=181 Identities=11% Similarity=0.045 Sum_probs=124.4
Q ss_pred ceEEE--ccccHHHHHHHHHCCCe---EEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYK---VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~---V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
+|+|| |.||++|+..|.+.|+. +.+|++++++.++..+..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~----------------------------------- 46 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF----------------------------------- 46 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHc-----------------------------------
Confidence 79999 99999999999999864 589999988765443210
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+ ..+.+++..++++++|+||.|+|++. ..+++.++. ..++++|++
T Consensus 47 ------------------~-------------~~~~~~~~~~~~~~aDvVilav~p~~--~~~vl~~l~--~~~~~~vis 91 (258)
T PRK06476 47 ------------------P-------------KVRIAKDNQAVVDRSDVVFLAVRPQI--AEEVLRALR--FRPGQTVIS 91 (258)
T ss_pred ------------------C-------------CceEeCCHHHHHHhCCEEEEEeCHHH--HHHHHHHhc--cCCCCEEEE
Confidence 0 02345677777889999999999543 456776662 456777777
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc-c------cH
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR-G------FA 242 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~-g------~v 242 (294)
..++++.+.++..+....+.+..+|..|...+..+..+.. + .+.++++|+.+|..+.....+.. . +.
T Consensus 92 ~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~---~---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~ 165 (258)
T PRK06476 92 VIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYP---P---DPFVAALFDALGTAVECDSEEEYDLLAAASALM 165 (258)
T ss_pred ECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecC---C---HHHHHHHHHhcCCcEEECChHhccceeehhccH
Confidence 7788999999888765456677778776644333333332 1 15789999999987764321111 1 12
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 243 LNRIQFAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 243 ~nri~~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
.| ++ .++.++..++.+.|+++++..+++.
T Consensus 166 a~-~~-~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 166 AT-YF-GILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred HH-HH-HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 22 3677777888999999888776654
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.8e-12 Score=124.89 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=115.2
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
..++|+|| |.||+++|..|.+.|++|++||+++.. +.+.+
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~------------------------------------- 409 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQK------------------------------------- 409 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHH-------------------------------------
Confidence 44689999 999999999999999999999998542 21110
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhcc-CCcEEEEcCCcchHHHHHHHHHHhc-ccCCCeEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE-DAIFIQESVPEILQIKHQVYRAIDI-FMSSNTIL 167 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~-~aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii 167 (294)
.| +...++++++++ ++|+||.|+|... ...++.++.. .++++++|
T Consensus 410 -----------------~G--------------v~~~~~~~el~~~~aDvVILavP~~~--~~~vi~~l~~~~lk~g~iv 456 (667)
T PLN02712 410 -----------------LG--------------VSYFSDADDLCEEHPEVILLCTSILS--TEKVLKSLPFQRLKRSTLF 456 (667)
T ss_pred -----------------cC--------------CeEeCCHHHHHhcCCCEEEECCChHH--HHHHHHHHHHhcCCCCcEE
Confidence 12 123456766555 5999999999643 4567777764 57889999
Q ss_pred EecCCCC--CHHHHHhhcCCCCceeeeeecCCCCCCC-----eE-----EEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q psy13746 168 SSSTSSF--LPSVLSEHSTHRSQFIVAHPVNPPYFIP-----LV-----EIVPAAWTSERVITRTREIMTEIGMKPVTLT 235 (294)
Q Consensus 168 ~s~tSt~--~~~~ia~~l~~~~~~ig~h~~~p~~~~~-----lv-----eiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~ 235 (294)
++.+|+. ....+...++...+|++.|||.++..++ .. .++.++....+.++.+.++++.+|.+++.+.
T Consensus 457 vDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 457 VDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred EECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 9887763 3445555555556799999999876431 11 1233444455667778899999999999997
Q ss_pred ccccccHHH
Q psy13746 236 TEIRGFALN 244 (294)
Q Consensus 236 ~~~~g~v~n 244 (294)
++.+..+..
T Consensus 537 ~eeHD~~~A 545 (667)
T PLN02712 537 CAEHDWHAA 545 (667)
T ss_pred HHHHHHHHH
Confidence 777776444
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=109.02 Aligned_cols=191 Identities=12% Similarity=0.069 Sum_probs=128.8
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCC---e-EEEEeCC-hHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEe
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGY---K-VSLYDVL-SEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLY 83 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~---~-V~~~d~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 83 (294)
|+.+||+|| |.||++++..+++.|+ + +++++++ +++.+...+..
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------------------------- 52 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY----------------------------- 52 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-----------------------------
Confidence 344689999 9999999999998873 3 7788874 55554332210
Q ss_pred ecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCC
Q psy13746 84 DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSS 163 (294)
Q Consensus 84 d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~ 163 (294)
| +..+.++.+++.++|+||.|+|... -+++++++.++++
T Consensus 53 ------------------------~--------------~~~~~~~~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~- 91 (245)
T PRK07634 53 ------------------------N--------------VSTTTDWKQHVTSVDTIVLAMPPSA--HEELLAELSPLLS- 91 (245)
T ss_pred ------------------------C--------------cEEeCChHHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-
Confidence 1 2345677778899999999999864 4677888877666
Q ss_pred CeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCe-EEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccH
Q psy13746 164 NTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL-VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA 242 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~l-veiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v 242 (294)
+.+|++.+.+++++.+.+.++...+++..||..|...+.. ..++.....+++..+.++.+|+.+|..+. +. +..-..
T Consensus 92 ~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~-~~-e~~~~~ 169 (245)
T PRK07634 92 NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQL-CT-EEEVHQ 169 (245)
T ss_pred CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEE-EC-HHHcch
Confidence 4577788889999999888765556777888766544332 23445556789999999999999998875 53 322111
Q ss_pred HH-------HHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 243 LN-------RIQFAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 243 ~n-------ri~~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
.. ..+..++......+.+.|+++++-.+++.
T Consensus 170 ~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 170 LTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVI 207 (245)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 11122233333556666788887555443
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.5e-11 Score=108.61 Aligned_cols=206 Identities=17% Similarity=0.234 Sum_probs=137.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
.+|+|| |++|.++|..++++|++|+++|+++.+++..... ++| +.+++.+.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G-----~~~--------------------i~e~~~~~-- 62 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG-----ESY--------------------IEEPDLDE-- 62 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC-----cce--------------------eecCcHHH--
Confidence 799999 9999999999999999999999999998865432 223 23333322
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch--------HHHHHHHHHHhcccCC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL--------QIKHQVYRAIDIFMSS 163 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~--------~~k~~~~~~l~~~~~~ 163 (294)
.+++.++.| +++.|+|..+ ++.||++|.|+|..+ .......+.|.+.+.+
T Consensus 63 --------~v~~~v~~g-------------~lraTtd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k 120 (436)
T COG0677 63 --------VVKEAVESG-------------KLRATTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKK 120 (436)
T ss_pred --------HHHHHHhcC-------------CceEecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCC
Confidence 133333333 4788999986 789999999999854 3345666789999999
Q ss_pred CeEEEecCCCCCHH---HHHhh-------cCCCCceeeeeecCCCCC---------CCeEEEecCCCCCHHHHHHHHHHH
Q psy13746 164 NTILSSSTSSFLPS---VLSEH-------STHRSQFIVAHPVNPPYF---------IPLVEIVPAAWTSERVITRTREIM 224 (294)
Q Consensus 164 ~~ii~s~tSt~~~~---~ia~~-------l~~~~~~ig~h~~~p~~~---------~~lveiv~g~~t~~e~~~~~~~ll 224 (294)
+.+++.- ||.++. ++..- +..+..|.-.| .|.+. .....+++| .+|+..+.+..++
T Consensus 121 G~LVIlE-ST~~PGTTe~v~~plle~~sgL~~~~Df~lay--sPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY 195 (436)
T COG0677 121 GDLVILE-STTPPGTTEEVVKPLLEERSGLKFGEDFYLAY--SPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALY 195 (436)
T ss_pred CCEEEEe-cCCCCCcHHHHHHHHHhhcCCCcccceeeEee--CccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHH
Confidence 9887744 443333 22221 22222222222 22211 123347777 6899999999999
Q ss_pred HHcCCeeEEEccccc----ccHHHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 225 TEIGMKPVTLTTEIR----GFALNR---IQFAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 225 ~~lG~~~v~v~~~~~----g~v~nr---i~~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
+.+-...+.+..... ..+-|. +..++.||-..++++-|+|.-++.++-.
T Consensus 196 ~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevIeaAn 251 (436)
T COG0677 196 KTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVIEAAN 251 (436)
T ss_pred HHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHHHHhc
Confidence 998877666642111 122231 2368899999999999999777666544
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-11 Score=107.50 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=120.4
Q ss_pred cceEEE--ccccHHHHHHHHHCC----CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG----YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G----~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
++|+|| |.||.+|+..|.++| .+|++.++++++.....+..
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~--------------------------------- 48 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY--------------------------------- 48 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc---------------------------------
Confidence 689999 999999999999999 68999999999876332211
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
| +..+++..+++..+|+||.|+.+.. -.+++.++.. ..++.+|
T Consensus 49 --------------------g--------------~~~~~~~~~~~~~advv~LavKPq~--~~~vl~~l~~-~~~~~lv 91 (266)
T COG0345 49 --------------------G--------------VVTTTDNQEAVEEADVVFLAVKPQD--LEEVLSKLKP-LTKDKLV 91 (266)
T ss_pred --------------------C--------------CcccCcHHHHHhhCCEEEEEeChHh--HHHHHHHhhc-ccCCCEE
Confidence 1 1125666678899999999997643 5678888887 7788888
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEE-EecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE-IVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lve-iv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
+|...+++++.+...+. ..+++...|..|...+..+. +..+...+++..+++..+|+.+|.. +++
T Consensus 92 ISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v-~~v 157 (266)
T COG0345 92 ISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKV-VEV 157 (266)
T ss_pred EEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCe-EEe
Confidence 89999999999999987 67888999988886665444 6666788999999999999999965 455
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-12 Score=117.50 Aligned_cols=197 Identities=17% Similarity=0.138 Sum_probs=124.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||.+||..|+++|++|++|+++++..+.......+. .|
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--~~------------------------------ 52 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--EY------------------------------ 52 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--cc------------------------------
Confidence 589999 99999999999999999999999988776554321100 00
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.++ .....++..++++.++++++|+||.|+|... + ++++ +.+++++++++.+
T Consensus 53 ------------------~~g----~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~~~-~-~~v~----~~l~~~~~vi~~~ 104 (328)
T PRK14618 53 ------------------LPG----VALPAELYPTADPEEALAGADFAVVAVPSKA-L-RETL----AGLPRALGYVSCA 104 (328)
T ss_pred ------------------CCC----CcCCCCeEEeCCHHHHHcCCCEEEEECchHH-H-HHHH----HhcCcCCEEEEEe
Confidence 000 0111224566788878899999999999873 2 3444 4456677776655
Q ss_pred CCCC-----HHHHHhhcCC----CCceeeeeecCCCC---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc
Q psy13746 172 SSFL-----PSVLSEHSTH----RSQFIVAHPVNPPY---FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR 239 (294)
Q Consensus 172 St~~-----~~~ia~~l~~----~~~~ig~h~~~p~~---~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~ 239 (294)
.++. ...+++.+.. +..+++ .|..+.. ....+.++.+ .+++.+++++++|+..|.++.+. .|.-
T Consensus 105 ~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~-gP~~a~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~-~di~ 180 (328)
T PRK14618 105 KGLAPDGGRLSELARVLEFLTQARVAVLS-GPNHAEEIARFLPAATVVAS--PEPGLARRVQAAFSGPSFRVYTS-RDRV 180 (328)
T ss_pred eccccCCCccchHHHHHHHhcCCCeEEEE-CccHHHHHHcCCCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEec-CCcc
Confidence 5544 3344444321 111111 1111111 1123344444 47899999999999999887642 2221
Q ss_pred c----------------c-----HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHc
Q psy13746 240 G----------------F-----ALNRI----QFAVLNECYHLVHDGVLSAKDIDRVMSE 274 (294)
Q Consensus 240 g----------------~-----v~nri----~~a~~~Ea~~l~~~~~~~~~~id~a~~~ 274 (294)
| . +.|++ +...++|++.++++.|++++.+...+..
T Consensus 181 g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~ 240 (328)
T PRK14618 181 GVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGL 240 (328)
T ss_pred chhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcch
Confidence 1 1 11222 2346899999999999999999888654
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-11 Score=108.14 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=108.1
Q ss_pred ceEEE--ccccHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
+|+|| |.||++||..|.++|+ +|++|||++++.+...+..
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~---------------------------------- 47 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY---------------------------------- 47 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc----------------------------------
Confidence 69999 9999999999999994 7999999987765432210
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.| +..+.+..+++.++|+||.|+|... -.++++++.++++++++|+
T Consensus 48 ------------------~g--------------~~~~~~~~~~~~~aDiVilav~p~~--~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 48 ------------------PG--------------IHVAKTIEEVISQSDLIFICVKPLD--IYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred ------------------CC--------------eEEECCHHHHHHhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEE
Confidence 01 3445677777899999999998654 4577888888888888888
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCC-CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 235 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~-~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~ 235 (294)
+.+++++.+.++..+. .+.+..+|..|... .....++.++..+++..+.++++|+.+| .++++.
T Consensus 94 s~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G-~~~~i~ 158 (273)
T PRK07680 94 SITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNIS-TPLVIE 158 (273)
T ss_pred EECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCC-CEEEEC
Confidence 8888888888887764 23333444323211 1223345566678888999999999999 456664
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=110.93 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=108.1
Q ss_pred cccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHH
Q psy13746 21 LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHT 100 (294)
Q Consensus 21 ~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 100 (294)
+=|++||.+|+++||+|++||+++++++...
T Consensus 30 ~gGspMArnLlkAGheV~V~Drnrsa~e~e~------------------------------------------------- 60 (341)
T TIGR01724 30 YGGSRMAIEFAMAGHDVVLAEPNREFMSDDL------------------------------------------------- 60 (341)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCChhhhhhhh-------------------------------------------------
Confidence 3489999999999999999999987654211
Q ss_pred HHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHH
Q psy13746 101 LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS 180 (294)
Q Consensus 101 l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia 180 (294)
++.+.+.| ...+++..++++++|+||.|+|.+..++ +++..+.+.++++++|+ ++||++++.+.
T Consensus 61 ~e~LaeaG--------------A~~AaS~aEAAa~ADVVIL~LPd~aaV~-eVl~GLaa~L~~GaIVI-D~STIsP~t~~ 124 (341)
T TIGR01724 61 WKKVEDAG--------------VKVVSDDKEAAKHGEIHVLFTPFGKGTF-SIARTIIEHVPENAVIC-NTCTVSPVVLY 124 (341)
T ss_pred hHHHHHCC--------------CeecCCHHHHHhCCCEEEEecCCHHHHH-HHHHHHHhcCCCCCEEE-ECCCCCHHHHH
Confidence 11112223 2456778889999999999999776554 45677888899999887 57888888655
Q ss_pred hhcC----CCCceeeeeecCCCC----CCCeEEEecCC------CCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 181 EHST----HRSQFIVAHPVNPPY----FIPLVEIVPAA------WTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 181 ~~l~----~~~~~ig~h~~~p~~----~~~lveiv~g~------~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
..+. ...+-+|...|+|.- .+.-.-++.|. -.++|.++++.++.+..|+.++.++.+-
T Consensus 125 ~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l 196 (341)
T TIGR01724 125 YSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADV 196 (341)
T ss_pred HHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhh
Confidence 5443 234566766666642 12222233332 3578999999999999999999986543
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-11 Score=116.62 Aligned_cols=209 Identities=13% Similarity=0.142 Sum_probs=134.3
Q ss_pred cceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
++|+|| |.+|..+|..|+++| ++|+++|+++++++...+... .+++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~-------------------------~~~e----- 51 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL-------------------------PIYE----- 51 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC-------------------------ccCC-----
Confidence 689999 999999999999984 889999999999887643211 0111
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch-------------HHHHHHHHH
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL-------------QIKHQVYRA 156 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~-------------~~k~~~~~~ 156 (294)
..+.+++.++ ...++++++++.+++++||++|.|+|.+. .....+.++
T Consensus 52 ---------~gl~ell~~~----------~~~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~ 112 (473)
T PLN02353 52 ---------PGLDEVVKQC----------RGKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARM 112 (473)
T ss_pred ---------CCHHHHHHHh----------hcCCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHH
Confidence 1122222111 01247889999888999999999997543 244567788
Q ss_pred HhcccCCCeEEEecCCCCCHHH---HHhhcCC--C-CceeeeeecCCCCC---------CCeEEE-ecCCC--CCHHHHH
Q psy13746 157 IDIFMSSNTILSSSTSSFLPSV---LSEHSTH--R-SQFIVAHPVNPPYF---------IPLVEI-VPAAW--TSERVIT 218 (294)
Q Consensus 157 l~~~~~~~~ii~s~tSt~~~~~---ia~~l~~--~-~~~ig~h~~~p~~~---------~~lvei-v~g~~--t~~e~~~ 218 (294)
|.++++++++|+ ..||+++.. +...+.. + ..|.- -++|... ...-.+ +++.. +.++..+
T Consensus 113 i~~~l~~~~lVv-~~STvp~Gtt~~~~~~l~~~~~g~~f~v--~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~ 189 (473)
T PLN02353 113 IADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSKGINFQI--LSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQ 189 (473)
T ss_pred HHhhCCCCcEEE-EeCCCCCChHHHHHHHHHhhCCCCCeEE--EECCCccCCCCcccccCCCCEEEEccCCchhhHHHHH
Confidence 999999998876 466666553 2222211 1 11110 1233211 112224 45531 1256788
Q ss_pred HHHHHHHHcCC-eeEEEcc-c---ccccHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHc
Q psy13746 219 RTREIMTEIGM-KPVTLTT-E---IRGFALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMSE 274 (294)
Q Consensus 219 ~~~~ll~~lG~-~~v~v~~-~---~~g~v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~~ 274 (294)
.+++++..+-. .++.+.. . -..++.|... .+++||...+|++.++|..++.+++..
T Consensus 190 ~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~ 253 (473)
T PLN02353 190 ALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAVGK 253 (473)
T ss_pred HHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 99999998853 3444421 1 2234566554 478999999999999999999988764
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.4e-11 Score=106.40 Aligned_cols=151 Identities=13% Similarity=0.042 Sum_probs=115.4
Q ss_pred cceEEE--ccccHHHHHHHHHCC----CeEEEEeCChHH-HHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG----YKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G----~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
++|+|| |.||++||..|.++| ++|.+|+++++. .+.....
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~--------------------------------- 48 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDK--------------------------------- 48 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHH---------------------------------
Confidence 589999 999999999999998 789999997533 2211110
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
. .....+.+..+++.++|+||.|+|... -.+++.++.++++++++
T Consensus 49 ---------------------~------------~~~~~~~~~~e~~~~aDvVilavpp~~--~~~vl~~l~~~l~~~~~ 93 (277)
T PRK06928 49 ---------------------Y------------PTVELADNEAEIFTKCDHSFICVPPLA--VLPLLKDCAPVLTPDRH 93 (277)
T ss_pred ---------------------c------------CCeEEeCCHHHHHhhCCEEEEecCHHH--HHHHHHHHHhhcCCCCE
Confidence 0 012345677777899999999999654 45788888888888888
Q ss_pred EEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEE-EecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 167 LSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE-IVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 167 i~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lve-iv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
|+|...+++.+++.+.++. .+++...|..|...+..+. +..++..+++..+.++.+|+.+|... ++
T Consensus 94 ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~-~v 160 (277)
T PRK06928 94 VVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVM-TI 160 (277)
T ss_pred EEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEE-EE
Confidence 8888889999999987753 4788888988876655444 55667788999999999999999765 44
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-11 Score=109.12 Aligned_cols=184 Identities=16% Similarity=0.075 Sum_probs=128.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..|...|++|++++++.++.....+
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~-------------------------------------- 58 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAE-------------------------------------- 58 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHH--------------------------------------
Confidence 3689999 999999999999999999999887544321110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH-HHHhcccCCCeEEEe
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILSS 169 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~s 169 (294)
+.| +.. .+..++++.||+|+.++|+... ..++ +++.+.++++++| +
T Consensus 59 ---------------~~G--------------~~~-~s~~eaa~~ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~ 105 (330)
T PRK05479 59 ---------------ADG--------------FEV-LTVAEAAKWADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-A 105 (330)
T ss_pred ---------------HCC--------------Cee-CCHHHHHhcCCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-E
Confidence 012 222 3677889999999999997654 5676 7899999999988 5
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCC-------CCCeE-EEe-cCCCCCHHHHHHHHHHHHHcCCeeE-----EEc
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPY-------FIPLV-EIV-PAAWTSERVITRTREIMTEIGMKPV-----TLT 235 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~-------~~~lv-eiv-~g~~t~~e~~~~~~~ll~~lG~~~v-----~v~ 235 (294)
..++..+..+....+...+++-..|..|.. .+.-+ -++ .....+.+..+.+..++..+|..+. .+.
T Consensus 106 ~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~ 185 (330)
T PRK05479 106 FAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFK 185 (330)
T ss_pred ECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccceeeeeec
Confidence 778888776654444445677777877765 33322 233 3444568889999999999999865 443
Q ss_pred ccc-cccH-----HHHHHHHHHHHHHHHHHcCCCCHHH
Q psy13746 236 TEI-RGFA-----LNRIQFAVLNECYHLVHDGVLSAKD 267 (294)
Q Consensus 236 ~~~-~g~v-----~nri~~a~~~Ea~~l~~~~~~~~~~ 267 (294)
.+. .... .-.-+..++..++..+.+.|.+|+.
T Consensus 186 ~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~ 223 (330)
T PRK05479 186 EETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEM 223 (330)
T ss_pred ccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 332 2222 2222335677888888888888876
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.7e-11 Score=118.23 Aligned_cols=163 Identities=17% Similarity=0.052 Sum_probs=112.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+++|..|.+.|++|++||++... +.+.+
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~--------------------------------------- 92 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARS--------------------------------------- 92 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHH---------------------------------------
Confidence 589999 999999999999999999999998543 22111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhc-cCCcEEEEcCCcchHHHHHHHHHHh-cccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL-EDAIFIQESVPEILQIKHQVYRAID-IFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~-~~aDlVieavpe~~~~k~~~~~~l~-~~~~~~~ii~s 169 (294)
.| +...+++.+.+ .++|+||.|+|... ..+++.++. ..++++++|++
T Consensus 93 ---------------~G--------------v~~~~d~~e~~~~~aDvViLavP~~~--~~~vl~~l~~~~l~~g~iVvD 141 (667)
T PLN02712 93 ---------------LG--------------VSFFLDPHDLCERHPDVILLCTSIIS--TENVLKSLPLQRLKRNTLFVD 141 (667)
T ss_pred ---------------cC--------------CEEeCCHHHHhhcCCCEEEEcCCHHH--HHHHHHhhhhhcCCCCeEEEE
Confidence 12 22345666644 57999999999653 457778775 56788999988
Q ss_pred cCCCCC--HHHHHhhcCCCCceeeeeecCCCCC------CCeEEEe----cCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 170 STSSFL--PSVLSEHSTHRSQFIVAHPVNPPYF------IPLVEIV----PAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 170 ~tSt~~--~~~ia~~l~~~~~~ig~h~~~p~~~------~~lveiv----~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
.+|... ...+...++...+|++.|||..+.. +..+.+. +.+....+.++.++++++.+|.+++.+.++
T Consensus 142 v~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~e 221 (667)
T PLN02712 142 VLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCT 221 (667)
T ss_pred CCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeCHH
Confidence 776542 2234455544457999999997751 1112222 222233456788889999999999999777
Q ss_pred ccccHHHHHH
Q psy13746 238 IRGFALNRIQ 247 (294)
Q Consensus 238 ~~g~v~nri~ 247 (294)
.+..+...+.
T Consensus 222 eHD~~~A~vs 231 (667)
T PLN02712 222 EHDKYAAESQ 231 (667)
T ss_pred HHHHHHHHHH
Confidence 7776554443
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=111.63 Aligned_cols=168 Identities=16% Similarity=0.146 Sum_probs=113.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||++||..|+.+||+|++|+|++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~---------------------------------------------- 38 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG---------------------------------------------- 38 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC----------------------------------------------
Confidence 589999 99999999999999999999998742
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcc-cCCCeEEEec
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF-MSSNTILSSS 170 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~-~~~~~ii~s~ 170 (294)
+++.++++++|+||.|+|.+ ..+.++.++..+ +++++++++.
T Consensus 39 -----------------------------------~~~~~~~~~advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~ 81 (308)
T PRK14619 39 -----------------------------------LSLAAVLADADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTA 81 (308)
T ss_pred -----------------------------------CCHHHHHhcCCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEe
Confidence 13445678999999999985 356777888764 6788888876
Q ss_pred CCCCCHHH---H----HhhcCCCCceeeeeecCCC------CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 171 TSSFLPSV---L----SEHSTHRSQFIVAHPVNPP------YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 171 tSt~~~~~---i----a~~l~~~~~~ig~h~~~p~------~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
+.++.+.. + ...+.. .+++. +..|. ...+...++.+ .+++.++.++++|+..|.++++. .|
T Consensus 82 s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~~~~~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~-~d 155 (308)
T PRK14619 82 TKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQGLPAATVVAS--RDLAAAETVQQIFSSERFRVYTN-SD 155 (308)
T ss_pred CCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhcCCCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEec-CC
Confidence 65454332 1 111111 11210 01221 11123334444 47899999999999999888765 34
Q ss_pred ccc-c--------------------HHHHHH----HHHHHHHHHHHHcCCCCHHHHHH
Q psy13746 238 IRG-F--------------------ALNRIQ----FAVLNECYHLVHDGVLSAKDIDR 270 (294)
Q Consensus 238 ~~g-~--------------------v~nri~----~a~~~Ea~~l~~~~~~~~~~id~ 270 (294)
..| . +.++.. ...++|++++++..|++++.+..
T Consensus 156 ~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~ 213 (308)
T PRK14619 156 PLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYG 213 (308)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 222 0 122222 34689999999999999888866
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.2e-10 Score=99.45 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=106.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
+||+|| |.||++|+..+.++|. +++++|+++++..
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~--------------------------------------- 44 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTP--------------------------------------- 44 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCC---------------------------------------
Confidence 589999 9999999999999872 4889988764310
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.....+..+++.++|+||.|+|... -.+++.++.++++++.|
T Consensus 45 -----------------------------------~~~~~~~~~~~~~~D~Vilavkp~~--~~~vl~~i~~~l~~~~i- 86 (260)
T PTZ00431 45 -----------------------------------FVYLQSNEELAKTCDIIVLAVKPDL--AGKVLLEIKPYLGSKLL- 86 (260)
T ss_pred -----------------------------------eEEeCChHHHHHhCCEEEEEeCHHH--HHHHHHHHHhhccCCEE-
Confidence 1123455566789999999998654 56888898887776554
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
+|...++.++.+...++...+.+...|..|...+. ...++++...+++..+.++.+|+.+|... .+
T Consensus 87 IS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~-~v 153 (260)
T PTZ00431 87 ISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQ-EI 153 (260)
T ss_pred EEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEE-EE
Confidence 56778888888888775444455666666654443 44566777788899999999999999765 44
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-11 Score=102.86 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=79.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
|||+|+ |++|..+|..|+.+||+|+++|+++++++...+... + +++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~-----p--------------------~~E------- 48 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGEL-----P--------------------IYE------- 48 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSS-----S--------------------S-C-------
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccc-----c--------------------ccc-------
Confidence 589999 999999999999999999999999999887543211 0 111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch--------HHHHHHHHHHhcccCC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL--------QIKHQVYRAIDIFMSS 163 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~--------~~k~~~~~~l~~~~~~ 163 (294)
..+++++++... .++++++++..++++++|++|.|+|.+. .....+.++|.+++++
T Consensus 49 -------~~l~~ll~~~~~---------~~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~ 112 (185)
T PF03721_consen 49 -------PGLDELLKENVS---------AGRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP 112 (185)
T ss_dssp -------TTHHHHHHHHHH---------TTSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS
T ss_pred -------cchhhhhccccc---------cccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh
Confidence 112222221110 1458899999988999999999998643 3346677889999999
Q ss_pred CeEEEecCCCCCHHHHH
Q psy13746 164 NTILSSSTSSFLPSVLS 180 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~ia 180 (294)
+++|+ .-||+++....
T Consensus 113 ~~lvV-~~STvppGtt~ 128 (185)
T PF03721_consen 113 GDLVV-IESTVPPGTTE 128 (185)
T ss_dssp CEEEE-ESSSSSTTHHH
T ss_pred cceEE-EccEEEEeeeh
Confidence 99887 56777766444
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-10 Score=103.59 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=113.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+++|..++++||+|.+|.++++..++..+. |+.+.|++..
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~--~~N~~yLp~i-------------------------- 53 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET--RENPKYLPGI-------------------------- 53 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc--CcCccccCCc--------------------------
Confidence 689999 9999999999999999999999999998876554 2223443321
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.....+.+++|+.+++++||+|+.++|... .+++++++..++++++++++.+
T Consensus 54 --------------------------~lp~~l~at~Dl~~a~~~ad~iv~avPs~~--~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 54 --------------------------LLPPNLKATTDLAEALDGADIIVIAVPSQA--LREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred --------------------------cCCcccccccCHHHHHhcCCEEEEECChHH--HHHHHHHHhhhccCCCeEEEEe
Confidence 122457889999999999999999999754 6788899988889999988877
Q ss_pred CCCCHH------H-HHhhcCCCCceeeeeecCCCC-------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 172 SSFLPS------V-LSEHSTHRSQFIVAHPVNPPY-------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 172 St~~~~------~-ia~~l~~~~~~ig~h~~~p~~-------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
-++.+. + +.+.++ ...++ ++..|+ ..+....+.+ .|++..+.++.+|..=-.+++.. .|
T Consensus 106 KGie~~t~~l~seii~e~l~--~~~~~--vLSGPs~A~EVa~g~pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~-~D 178 (329)
T COG0240 106 KGLEPETGRLLSEIIEEELP--DNPIA--VLSGPSFAKEVAQGLPTAVVVAS--NDQEAAEKVQALFSSPYFRVYTS-TD 178 (329)
T ss_pred ccccCCCcchHHHHHHHHcC--CCeEE--EEECccHHHHHhcCCCcEEEEec--CCHHHHHHHHHHhCCCcEEEEec-Cc
Confidence 776443 2 223332 11122 222222 1223334444 58888888888887755555554 45
Q ss_pred ccc
Q psy13746 238 IRG 240 (294)
Q Consensus 238 ~~g 240 (294)
..|
T Consensus 179 v~G 181 (329)
T COG0240 179 VIG 181 (329)
T ss_pred hhh
Confidence 554
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=96.39 Aligned_cols=104 Identities=31% Similarity=0.372 Sum_probs=78.4
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
||+|+ |.||.++|..++++|++|++|.++++.++...+...+ +.|+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n--~~~~~~---------------------------- 50 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQN--PKYLPG---------------------------- 50 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSE--TTTSTT----------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCC--CCCCCC----------------------------
Confidence 68999 9999999999999999999999999887766543221 111110
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
.....++..++|++++++++|+||.++|... -+++++++.+++++++++++.+.
T Consensus 51 ------------------------~~l~~~i~~t~dl~~a~~~ad~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~K 104 (157)
T PF01210_consen 51 ------------------------IKLPENIKATTDLEEALEDADIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATK 104 (157)
T ss_dssp ------------------------SBEETTEEEESSHHHHHTT-SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-
T ss_pred ------------------------cccCcccccccCHHHHhCcccEEEecccHHH--HHHHHHHHhhccCCCCEEEEecC
Confidence 1223457889999999999999999999876 56899999999999998887776
Q ss_pred CC
Q psy13746 173 SF 174 (294)
Q Consensus 173 t~ 174 (294)
++
T Consensus 105 G~ 106 (157)
T PF01210_consen 105 GF 106 (157)
T ss_dssp SE
T ss_pred Cc
Confidence 65
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-11 Score=93.86 Aligned_cols=51 Identities=49% Similarity=0.787 Sum_probs=49.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 240 GFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 240 g~v~nri~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
||++||++.++++||++++++|.+++++||.+++.++|+| +|||+++|.+|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p---~Gpf~l~D~~G 51 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFP---MGPFELADLVG 51 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHS---STHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCC---CccchHHHHhC
Confidence 7999999999999999999999999999999999999999 99999999987
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A .... |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=101.05 Aligned_cols=193 Identities=16% Similarity=0.142 Sum_probs=119.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|+++|++|++||+++. .+...+. |..+. +.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~-----------------------g~~~~--~~------ 50 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAH-----------------------GLTLT--DY------ 50 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhc-----------------------Cceee--cC------
Confidence 589999 99999999999999999999999653 2222110 00000 00
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
++. .......++..+++.+ +++++|+||.|++... ..++++++.+.++++++|++.+
T Consensus 51 -------------------~~~-~~~~~~~~~~~~~~~~-~~~~~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~ 107 (341)
T PRK08229 51 -------------------RGR-DVRVPPSAIAFSTDPA-ALATADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQ 107 (341)
T ss_pred -------------------CCc-ceecccceeEeccChh-hccCCCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeC
Confidence 000 0000112345566664 6799999999998765 4678888999889999888777
Q ss_pred CCCCH-HHHHhhcCCCCceeeeeecC----CCCC-----CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc-
Q psy13746 172 SSFLP-SVLSEHSTHRSQFIVAHPVN----PPYF-----IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG- 240 (294)
Q Consensus 172 St~~~-~~ia~~l~~~~~~ig~h~~~----p~~~-----~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g- 240 (294)
.++.. +.++..+.....+.|.+++. ++.. ...+.+ +. .+.++.+.++|+..|.++.+.+ |..+
T Consensus 108 nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~--~~---~~~~~~~~~~l~~~g~~~~~~~-di~~~ 181 (341)
T PRK08229 108 NGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAI--EA---SPALRPFAAAFARAGLPLVTHE-DMRAV 181 (341)
T ss_pred CCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEe--cC---CchHHHHHHHHHhcCCCceecc-hhHHH
Confidence 77653 45666654322233334422 1110 111212 21 2446889999999998888874 4332
Q ss_pred ----cHHHH---HH--------------------HHHHHHHHHHHHcCCCCHHH
Q psy13746 241 ----FALNR---IQ--------------------FAVLNECYHLVHDGVLSAKD 267 (294)
Q Consensus 241 ----~v~nr---i~--------------------~a~~~Ea~~l~~~~~~~~~~ 267 (294)
++.|- +. ...+.|++.++++.|++++.
T Consensus 182 ~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~Gi~~~~ 235 (341)
T PRK08229 182 QWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAGIRPAR 235 (341)
T ss_pred HHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 34442 11 14578999999999988644
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-12 Score=119.50 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=113.8
Q ss_pred ceEEE--ccccHHHHH--HH----HHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 15 PDGII--GLIGQAWAM--IF----ASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~--~~----~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
||+|| |.||.+++. .+ +..|++|.+||++++.++.....+.
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~------------------------------- 50 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAK------------------------------- 50 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-------------------------------
Confidence 79999 999998766 33 4568899999999999877554332
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCC----------cchHHHHHHHHH
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP----------EILQIKHQVYRA 156 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavp----------e~~~~k~~~~~~ 156 (294)
+.+. .. ....+++.++|+.+++++||+||++++ +++.+|..++++
T Consensus 51 ------------~~~~----~~---------~~~~~I~~ttD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~ 105 (423)
T cd05297 51 ------------KIVE----EL---------GAPLKIEATTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQT 105 (423)
T ss_pred ------------HHHH----hc---------CCCeEEEEeCCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeee
Confidence 1111 10 011357788999889999999999999 357888899999
Q ss_pred HhcccCCCeEEEecCCCCCHHHHHhhcCC--CCceeeeeecCCCCCC-----Ce--EEEecCCCCCHHHHHHHHHHHHHc
Q psy13746 157 IDIFMSSNTILSSSTSSFLPSVLSEHSTH--RSQFIVAHPVNPPYFI-----PL--VEIVPAAWTSERVITRTREIMTEI 227 (294)
Q Consensus 157 l~~~~~~~~ii~s~tSt~~~~~ia~~l~~--~~~~ig~h~~~p~~~~-----~l--veiv~g~~t~~e~~~~~~~ll~~l 227 (294)
+.+.+++++++.+++|...+.+++..+.. | +.+.+||.||+... +. ..+++.... .+.....+.+.+
T Consensus 106 ~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv~i~t~~~~k~~~~rviG~c~~---~~~~~~~~a~~l 181 (423)
T cd05297 106 VGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPMAELTWALNRYTPIKTVGLCHG---VQGTAEQLAKLL 181 (423)
T ss_pred ccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChHHHHHHHHHHhCCCCEEEECCc---HHHHHHHHHHHh
Confidence 99999999999999988888888877753 6 89999999997421 11 234443222 445566677778
Q ss_pred CCe
Q psy13746 228 GMK 230 (294)
Q Consensus 228 G~~ 230 (294)
|..
T Consensus 182 ~~~ 184 (423)
T cd05297 182 GEP 184 (423)
T ss_pred CCC
Confidence 863
|
linked to 3D####ucture |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-09 Score=92.30 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=103.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||+++|..|+++|++|++|++++++++...+...+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~---------------------------------- 46 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE---------------------------------- 46 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh----------------------------------
Confidence 379999 6899999999999999999999999887654432110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.+ ...|. + .++.. .+..++++++|+||.|+|... -.++++++...++. ++|++.
T Consensus 47 ---------~~---~~~g~-~---------~~~~~-~~~~ea~~~aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~ 100 (219)
T TIGR01915 47 ---------EL---GHGGS-D---------IKVTG-ADNAEAAKRADVVILAVPWDH--VLKTLESLRDELSG-KLVISP 100 (219)
T ss_pred ---------hc---cccCC-C---------ceEEE-eChHHHHhcCCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEe
Confidence 00 00010 0 01222 244567899999999999764 34666777666654 677766
Q ss_pred CCCCCH-----------------HHHHhhcCCCCceeeeeecCCCC-------CCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy13746 171 TSSFLP-----------------SVLSEHSTHRSQFIVAHPVNPPY-------FIPLVEIVPAAWTSERVITRTREIMTE 226 (294)
Q Consensus 171 tSt~~~-----------------~~ia~~l~~~~~~ig~h~~~p~~-------~~~lveiv~g~~t~~e~~~~~~~ll~~ 226 (294)
+-++.. +.+++.++...+++...+..+.. ..+.-.++.|+ +++..+.+..+.+.
T Consensus 101 ~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~ 178 (219)
T TIGR01915 101 VVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGR 178 (219)
T ss_pred ccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHh
Confidence 655554 33555554325666654433321 11222345553 67788999999999
Q ss_pred c-CCeeEEEcc
Q psy13746 227 I-GMKPVTLTT 236 (294)
Q Consensus 227 l-G~~~v~v~~ 236 (294)
+ |..|+.+++
T Consensus 179 ~~G~~~vd~G~ 189 (219)
T TIGR01915 179 IDGLRALDAGP 189 (219)
T ss_pred cCCCCcccCCc
Confidence 9 999988753
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-09 Score=96.88 Aligned_cols=197 Identities=20% Similarity=0.209 Sum_probs=135.3
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
....|++| |+||+.+|.+.+++||+|.+|+|+.++.++..+...
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~---------------------------------- 47 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERA---------------------------------- 47 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCc----------------------------------
Confidence 34679999 999999999999999999999999999876543211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChh---hhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR---ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~---~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
+| .+|.++.+++ ..++.-.-|+.++.--. ....++++|.+++.++-|
T Consensus 48 -----------------~~------------k~i~~~~sieefV~~Le~PRkI~lMVkAG~-~VD~~I~~L~p~Le~gDI 97 (473)
T COG0362 48 -----------------KG------------KNIVPAYSIEEFVASLEKPRKILLMVKAGT-PVDAVIEQLLPLLEKGDI 97 (473)
T ss_pred -----------------cC------------CCccccCcHHHHHHHhcCCceEEEEEecCC-cHHHHHHHHHhhcCCCCE
Confidence 00 1233333333 34566777777765431 235788999999999999
Q ss_pred EEecCCCCCHHHHHh---hcCCCCceeeeeecCCCCCC-CeEEEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcc
Q psy13746 167 LSSSTSSFLPSVLSE---HSTHRSQFIVAHPVNPPYFI-PLVEIVPAAWTSERVITRTREIMTEIGMK------PVTLTT 236 (294)
Q Consensus 167 i~s~tSt~~~~~ia~---~l~~~~~~ig~h~~~p~~~~-~lveiv~g~~t~~e~~~~~~~ll~~lG~~------~v~v~~ 236 (294)
|++..-+...+.+.+ .......|+|+..-...... .-..|||| ++++..+.+.++|+.+..+ ..++++
T Consensus 98 iIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~ 175 (473)
T COG0362 98 IIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGP 175 (473)
T ss_pred EEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECC
Confidence 998776655454432 22244567776543221100 12237888 7999999999999998753 356776
Q ss_pred ccccc----HHHHHH---HHHHHHHHHHHHc-CCCCHHHHHHHHHc
Q psy13746 237 EIRGF----ALNRIQ---FAVLNECYHLVHD-GVLSAKDIDRVMSE 274 (294)
Q Consensus 237 ~~~g~----v~nri~---~a~~~Ea~~l~~~-~~~~~~~id~a~~~ 274 (294)
++.|. |-|-+= +.++.|++.+++. .+.+.++|..+...
T Consensus 176 ~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~ 221 (473)
T COG0362 176 DGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEE 221 (473)
T ss_pred CCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 77774 334433 3589999999999 58899999888764
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.3e-09 Score=94.82 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=108.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCCh-HHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLS-EQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.||.++|..|...|++|+++++.. +..+++.+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~-------------------------------------- 45 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATE-------------------------------------- 45 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHH--------------------------------------
Confidence 689999 9999999999999999988766543 33332211
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| +... +..+++++||+|+.++|+... ...+++++.+.++++.+| +.
T Consensus 46 ----------------~G--------------v~~~-s~~ea~~~ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~iV-s~ 92 (314)
T TIGR00465 46 ----------------DG--------------FKVG-TVEEAIPQADLIMNLLPDEVQ-HEVYEAEIQPLLKEGKTL-GF 92 (314)
T ss_pred ----------------CC--------------CEEC-CHHHHHhcCCEEEEeCCcHhH-HHHHHHHHHhhCCCCcEE-EE
Confidence 12 2223 466778999999999998633 446667788888888755 56
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCC-------CCeE-EEe-cCCCCCHHHHHHHHHHHHHcCCe
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-------IPLV-EIV-PAAWTSERVITRTREIMTEIGMK 230 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~-------~~lv-eiv-~g~~t~~e~~~~~~~ll~~lG~~ 230 (294)
..++++..+...++...+++...|..|... +.-+ -++ .+...+.+..+.+..+++.+|..
T Consensus 93 aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 93 SHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred eCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 788888887776655557888999998863 4433 343 66667888899999999999987
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-08 Score=86.75 Aligned_cols=189 Identities=18% Similarity=0.209 Sum_probs=131.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+.| |.||..|...+.+.||+|.+||+|++..+++...
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~-------------------------------------- 42 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDE-------------------------------------- 42 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhc--------------------------------------
Confidence 468889 9999999999999999999999999998876431
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccC---hhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV---LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~---~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
| . +..++ +-..+.....|..++|-- ++...+++++.+.+.++.+|+
T Consensus 43 ----------------g-a-------------~~a~sl~el~~~L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivI 91 (300)
T COG1023 43 ----------------G-A-------------TGAASLDELVAKLSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVI 91 (300)
T ss_pred ----------------C-C-------------ccccCHHHHHHhcCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEE
Confidence 2 1 11122 222355667888888874 246789999999999999988
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCC-----CCC--CCeEEEecCCCCCHHHHHHHHHHHHHcCC---eeEEEcccc
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNP-----PYF--IPLVEIVPAAWTSERVITRTREIMTEIGM---KPVTLTTEI 238 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p-----~~~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~---~~v~v~~~~ 238 (294)
+..-+..-+.+.+.-. -.-.|.||++- ++. .....++.| +++.++++.++|+.+.- --.++++.+
T Consensus 92 DGGNS~y~Ds~rr~~~--l~~kgi~flD~GTSGG~~G~~~G~~lMiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~G 166 (300)
T COG1023 92 DGGNSNYKDSLRRAKL--LAEKGIHFLDVGTSGGVWGAERGYCLMIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSG 166 (300)
T ss_pred ECCccchHHHHHHHHH--HHhcCCeEEeccCCCCchhhhcCceEEecC---cHHHHHHHHHHHHhhCcCcCccccccCCC
Confidence 7765554443332111 11247787762 111 123445555 88999999999999875 345676666
Q ss_pred ccc----HHHHH---HHHHHHHHHHHHHcC--CCCHHHHHHHHHccc
Q psy13746 239 RGF----ALNRI---QFAVLNECYHLVHDG--VLSAKDIDRVMSEGL 276 (294)
Q Consensus 239 ~g~----v~nri---~~a~~~Ea~~l~~~~--~~~~~~id~a~~~g~ 276 (294)
.|. |-|-+ +.+.+.|.+.++++. ..|.+++.+.++.|.
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGS 213 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGS 213 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcc
Confidence 664 33433 345688999999988 456888999888763
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.1e-09 Score=87.93 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=69.3
Q ss_pred cCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCC-----CeEEEec
Q psy13746 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI-----PLVEIVP 208 (294)
Q Consensus 134 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~-----~lveiv~ 208 (294)
++||+||.|+|.+.. .++++++. .+|++.+|+.. .+.+. ..+|+|.|||..|... +.+.++
T Consensus 30 ~~~DlVilavPv~~~--~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~- 95 (197)
T PRK06444 30 KKADHAFLSVPIDAA--LNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFI- 95 (197)
T ss_pred CCCCEEEEeCCHHHH--HHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEEE-
Confidence 367999999998753 46666654 26778777654 23332 3479999999975332 333343
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHH
Q psy13746 209 AAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 209 g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~ 247 (294)
.+.++++.++.++.+++ |.+++.+.++.+..+...+.
T Consensus 96 ~~~~~~~~~~~~~~l~~--G~~~~~~t~eeHD~~~A~is 132 (197)
T PRK06444 96 NDISRDNYLNEINEMFR--GYHFVEMTADEHDLLMSEIM 132 (197)
T ss_pred CCCCCHHHHHHHHHHHc--CCEEEEeCHHHHHHHHHHHH
Confidence 56688888999999998 89999998888876655554
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-09 Score=84.19 Aligned_cols=113 Identities=27% Similarity=0.278 Sum_probs=70.0
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEE-EeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSL-YDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~-~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.-.||+|| |.+|..++..|.++||+|.. |.|+++..+++...+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~--------------------------------- 55 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG--------------------------------- 55 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T---------------------------------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc---------------------------------
Confidence 33699999 99999999999999999875 5777766665543321
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcc--cCCCeE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF--MSSNTI 166 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~--~~~~~i 166 (294)
+ ....++.+.+.++|++|.++|++. ..++.++|... ..++++
T Consensus 56 -----------------------~-----------~~~~~~~~~~~~aDlv~iavpDda--I~~va~~La~~~~~~~g~i 99 (127)
T PF10727_consen 56 -----------------------A-----------GAILDLEEILRDADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQI 99 (127)
T ss_dssp -----------------------T----------------TTGGGCC-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-E
T ss_pred -----------------------c-----------ccccccccccccCCEEEEEechHH--HHHHHHHHHHhccCCCCcE
Confidence 0 123456677899999999999985 56888999887 778888
Q ss_pred EEecCCC-CCHHHHHhhcCCCCceeeeee
Q psy13746 167 LSSSTSS-FLPSVLSEHSTHRSQFIVAHP 194 (294)
Q Consensus 167 i~s~tSt-~~~~~ia~~l~~~~~~ig~h~ 194 (294)
|+ .+|+ .+.+-++...........+||
T Consensus 100 Vv-HtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 100 VV-HTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp EE-ES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred EE-ECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 87 4554 454444444334445556675
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-08 Score=90.64 Aligned_cols=169 Identities=13% Similarity=0.056 Sum_probs=107.6
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
..+||+|| |.||..+|..|+++| +|++|.++++..+...+...+ ..|+.+
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~------------------------- 57 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGN------------------------- 57 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCC-------------------------
Confidence 34789999 999999999999999 789999999887765432110 111000
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+ .....++..++|+.++++++|+||.|+|... -+++++++.+++++++++++
T Consensus 58 ------------------~--------~~l~~~i~~t~d~~~a~~~aDlVilavps~~--~~~vl~~i~~~l~~~~~vIs 109 (341)
T PRK12439 58 ------------------D--------VVLSDTLRATTDFAEAANCADVVVMGVPSHG--FRGVLTELAKELRPWVPVVS 109 (341)
T ss_pred ------------------C--------cccCCCeEEECCHHHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEE
Confidence 0 0111346678888888999999999999653 56888999999988877766
Q ss_pred cCCCCCH-------HHHHhhcCCCCcee-eeeecCCCC--CCCe-EEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 170 STSSFLP-------SVLSEHSTHRSQFI-VAHPVNPPY--FIPL-VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 170 ~tSt~~~-------~~ia~~l~~~~~~i-g~h~~~p~~--~~~l-veiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
.+.++.. +.+.+.++. .++. -..|-.+.. .+.. ..++.+ .+++..+.++.+|..-+.++... .|.
T Consensus 110 l~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~~t~~via~--~~~~~~~~v~~lf~~~~~~v~~s-~Di 185 (341)
T PRK12439 110 LVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGYAAAAVLAM--PDQHLATRLSPLFRTRRFRVYTT-DDV 185 (341)
T ss_pred EEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCCCeEEEEEe--CCHHHHHHHHHHhCCCCEEEEEc-Cch
Confidence 6666654 244444431 1211 111211111 1222 223333 36777888888888888777665 465
Q ss_pred cc
Q psy13746 239 RG 240 (294)
Q Consensus 239 ~g 240 (294)
.|
T Consensus 186 ~g 187 (341)
T PRK12439 186 VG 187 (341)
T ss_pred HH
Confidence 54
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-09 Score=80.53 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=67.5
Q ss_pred ceEEE--ccccHHHHHHHHHCC---CeEEEE-eCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 15 PDGII--GLIGQAWAMIFASAG---YKVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G---~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
||+|| |.||.+|+..|.+.| ++|+++ ++++++.++..+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~--------------------------------- 47 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG--------------------------------- 47 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT---------------------------------
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc---------------------------------
Confidence 68999 999999999999999 999955 999999887654311
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeecc-ChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP-VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~-~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
..... +..++++.+|+||.|+|... -.+++.++ ....++.++
T Consensus 48 ----------------------------------~~~~~~~~~~~~~~advvilav~p~~--~~~v~~~i-~~~~~~~~v 90 (96)
T PF03807_consen 48 ----------------------------------VQATADDNEEAAQEADVVILAVKPQQ--LPEVLSEI-PHLLKGKLV 90 (96)
T ss_dssp ----------------------------------TEEESEEHHHHHHHTSEEEE-S-GGG--HHHHHHHH-HHHHTTSEE
T ss_pred ----------------------------------cccccCChHHhhccCCEEEEEECHHH--HHHHHHHH-hhccCCCEE
Confidence 12233 67788999999999999865 45788888 666778888
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
+|.+.
T Consensus 91 is~~a 95 (96)
T PF03807_consen 91 ISIAA 95 (96)
T ss_dssp EEEST
T ss_pred EEeCC
Confidence 77553
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-08 Score=91.32 Aligned_cols=170 Identities=13% Similarity=0.050 Sum_probs=105.4
Q ss_pred ccceEEE--ccccHHHHHHHHHCC-------CeEEEEeCChHH-HHHHHHHHHhhhh--hhhhcccccCCCCCccCCcee
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG-------YKVSLYDVLSEQ-IENAKNTIQHTLQ--DYHQKGCLKGSLSPAHAGYKV 80 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G-------~~V~~~d~~~~~-~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~v 80 (294)
.++|+|| |.||+++|..++++| ++|.+|.++++. -+...+.|++.+. .|++.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~---------------- 74 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPG---------------- 74 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCC----------------
Confidence 4689999 999999999999997 899999999862 1122233332221 12111
Q ss_pred EEeecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhc-
Q psy13746 81 SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDI- 159 (294)
Q Consensus 81 ~~~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~- 159 (294)
.....++..++|+.++++++|+||.++|... -+++++++.+
T Consensus 75 ------------------------------------~~Lp~ni~~tsdl~eav~~aDiIvlAVPsq~--l~~vl~~l~~~ 116 (365)
T PTZ00345 75 ------------------------------------IKLPDNIVAVSDLKEAVEDADLLIFVIPHQF--LESVLSQIKEN 116 (365)
T ss_pred ------------------------------------CcCCCceEEecCHHHHHhcCCEEEEEcChHH--HHHHHHHhccc
Confidence 1234568888999989999999999999764 6788999988
Q ss_pred -ccCCCeEEEecCCCCCHH--------H-HHhhcCCCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy13746 160 -FMSSNTILSSSTSSFLPS--------V-LSEHSTHRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTE 226 (294)
Q Consensus 160 -~~~~~~ii~s~tSt~~~~--------~-ia~~l~~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~ 226 (294)
.++++.++++.+.++.++ + +.+.+..+.-++. .|..+. ...+...++.+ .+++..+.++.+|..
T Consensus 117 ~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~Ls-GPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~ 193 (365)
T PTZ00345 117 NNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALS-GANVANDVAREEFSEATIGC--EDKDDALIWQRLFDR 193 (365)
T ss_pred cccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEE-CCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCC
Confidence 777777777666665432 2 2223322111111 111111 11223334444 478888888888876
Q ss_pred cCCeeEEEcccccc
Q psy13746 227 IGMKPVTLTTEIRG 240 (294)
Q Consensus 227 lG~~~v~v~~~~~g 240 (294)
=-.+++.. .|..|
T Consensus 194 ~~frvy~s-~Dv~G 206 (365)
T PTZ00345 194 PYFKINCV-PDVIG 206 (365)
T ss_pred CcEEEEEc-CCccc
Confidence 55555544 45544
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.3e-08 Score=86.29 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=84.1
Q ss_pred eeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCe
Q psy13746 124 SGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL 203 (294)
Q Consensus 124 ~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~l 203 (294)
..+.+..+.+.++|+||.|++++. -.+++.++...+.++.+|+|.+.+++++.+.+.+.+..+.+...|..|...+..
T Consensus 32 ~~~~~~~e~~~~aDiIiLaVkP~~--i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g 109 (245)
T TIGR00112 32 VASSDAQEAVKEADVVFLAVKPQD--LEEVLSELKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAG 109 (245)
T ss_pred EEeCChHHHHhhCCEEEEEeCHHH--HHHHHHHHhhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCC
Confidence 345667677789999999999432 457788888767777888899999999999888865456888888777665543
Q ss_pred -EEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q psy13746 204 -VEIVPAAWTSERVITRTREIMTEIGMKPVTLT 235 (294)
Q Consensus 204 -veiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~ 235 (294)
.-+..++..+++..+.++.+|+.+|... ++.
T Consensus 110 ~t~~~~~~~~~~~~~~~v~~lf~~~G~~~-~v~ 141 (245)
T TIGR00112 110 VTAIAANANVSEEDRALVLALFKAVGEVV-ELP 141 (245)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHhCCCEE-EEC
Confidence 3456677788889999999999999654 553
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.9e-08 Score=88.36 Aligned_cols=162 Identities=14% Similarity=0.090 Sum_probs=102.1
Q ss_pred ceEEE--ccccHHHHHHHHHCC--------CeEEEEeCC-----hHHHHHHHHHHHhhhh--hhhhcccccCCCCCccCC
Q psy13746 15 PDGII--GLIGQAWAMIFASAG--------YKVSLYDVL-----SEQIENAKNTIQHTLQ--DYHQKGCLKGSLSPAHAG 77 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G--------~~V~~~d~~-----~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~ 77 (294)
||+|| |.||.++|..++.+| ++|++|.++ ++..+ .|++.++ .|++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~----~in~~~~n~~ylp-------------- 62 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTE----IINTTHENVKYLP-------------- 62 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHH----HHHhcCCCccccC--------------
Confidence 68999 999999999999999 999999994 33322 2322111 1110
Q ss_pred ceeEEeecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHH
Q psy13746 78 YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAI 157 (294)
Q Consensus 78 ~~v~~~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l 157 (294)
| .....+++.++|+++++++||+||.++|... -+++++++
T Consensus 63 ------------------------------g--------i~Lp~~i~at~dl~eal~~ADiIIlAVPs~~--i~~vl~~l 102 (342)
T TIGR03376 63 ------------------------------G--------IKLPANLVAVPDLVEAAKGADILVFVIPHQF--LEGICKQL 102 (342)
T ss_pred ------------------------------C--------CcCCCCeEEECCHHHHHhcCCEEEEECChHH--HHHHHHHH
Confidence 0 1123457888999999999999999999765 56888999
Q ss_pred hcccCCCeEEEecCCCCCHH--H-------HHhhcCCCCceeeeeecCCCC------CCC-eEEEecCCCCC--HHHHHH
Q psy13746 158 DIFMSSNTILSSSTSSFLPS--V-------LSEHSTHRSQFIVAHPVNPPY------FIP-LVEIVPAAWTS--ERVITR 219 (294)
Q Consensus 158 ~~~~~~~~ii~s~tSt~~~~--~-------ia~~l~~~~~~ig~h~~~p~~------~~~-lveiv~g~~t~--~e~~~~ 219 (294)
.++++++.++++.+.++.++ . +.+.+..+ + -.+..|. .+. ....+.+...+ .+..+.
T Consensus 103 ~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~--~---~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~ 177 (342)
T TIGR03376 103 KGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIP--C---GVLSGANLANEVAKEKFSETTVGYRDPADFDVDARV 177 (342)
T ss_pred HhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCC--e---EEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHH
Confidence 99998888888777776544 1 22233211 1 1122221 122 23344442111 777888
Q ss_pred HHHHHHHcCCeeEEEcccccc
Q psy13746 220 TREIMTEIGMKPVTLTTEIRG 240 (294)
Q Consensus 220 ~~~ll~~lG~~~v~v~~~~~g 240 (294)
++.+|..=-.+++.. .|..|
T Consensus 178 ~~~lf~~~~frv~~s-~Dv~G 197 (342)
T TIGR03376 178 LKALFHRPYFRVNVV-DDVAG 197 (342)
T ss_pred HHHHhCCCCEEEEEc-CCccc
Confidence 888887544454443 45554
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-07 Score=80.75 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=108.2
Q ss_pred ccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHHH
Q psy13746 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTL 101 (294)
Q Consensus 22 mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~l 101 (294)
=|++||..|+.+||+|.+.|.|.+..+. ..|
T Consensus 32 GGa~mAiefAeAGHDVVLaePn~d~~dd-------------------------------------------------~~w 62 (340)
T COG4007 32 GGARMAIEFAEAGHDVVLAEPNRDIMDD-------------------------------------------------EHW 62 (340)
T ss_pred CchHHHHHHHHcCCcEEeecCCccccCH-------------------------------------------------HHH
Confidence 4899999999999999999999876553 224
Q ss_pred HHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHH---
Q psy13746 102 QDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV--- 178 (294)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~--- 178 (294)
++..+.| .+.++|-.++++.+.+.+.-.|=-. ..-.+.++|.++++++++|+ ||.|.++-.
T Consensus 63 ~~vedAG--------------V~vv~dD~eaa~~~Ei~VLFTPFGk-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~ 126 (340)
T COG4007 63 KRVEDAG--------------VEVVSDDAEAAEHGEIHVLFTPFGK-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYY 126 (340)
T ss_pred HHHHhcC--------------cEEecCchhhhhcceEEEEecccch-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHH
Confidence 4444444 3556666668999999999887652 12356788999999999987 676666553
Q ss_pred -HHhhcCCCCceeeeeecCCCCC----CCeEEEecCCC------CCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 179 -LSEHSTHRSQFIVAHPVNPPYF----IPLVEIVPAAW------TSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 179 -ia~~l~~~~~~ig~h~~~p~~~----~~lveiv~g~~------t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
++..+..+.+-+|..+|.|... ..-.-++.|.. .+++.++++.++.+.+|+.+++++.|
T Consensus 127 ~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~pad 196 (340)
T COG4007 127 SLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPAD 196 (340)
T ss_pred HhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHH
Confidence 3445555656788888877532 12233444433 35788999999999999999998644
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=93.95 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=86.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||.++|..++..|+ +|.++|++++.+. ++ ...
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~-~ld----------------------------------- 49 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GK-ALD----------------------------------- 49 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HH-HHH-----------------------------------
Confidence 689999 9999999999999995 9999999998743 21 111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC-------------------CcchHHHH
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV-------------------PEILQIKH 151 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav-------------------pe~~~~k~ 151 (294)
..... .......+++.++|++ ++++||+||++. +++..+++
T Consensus 50 ------------~~~~~-------~~~~~~~~I~~~~d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~ 109 (321)
T PTZ00082 50 ------------ISHSN-------VIAGSNSKVIGTNNYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMD 109 (321)
T ss_pred ------------HHhhh-------hccCCCeEEEECCCHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHH
Confidence 00000 0001113466678886 689999999955 55777888
Q ss_pred HHHHHHhcccCCC-eEEEecCCCCCHHHHHhhcCCC-Cceeeee
Q psy13746 152 QVYRAIDIFMSSN-TILSSSTSSFLPSVLSEHSTHR-SQFIVAH 193 (294)
Q Consensus 152 ~~~~~l~~~~~~~-~ii~s~tSt~~~~~ia~~l~~~-~~~ig~h 193 (294)
++.+++.+++++. .|+++|.+.+....+......| .|++|++
T Consensus 110 ~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 110 EVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred HHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 9999999998764 4566777766555565555544 7888866
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3e-07 Score=84.72 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=73.0
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||..+|..|+++|++|++|+|+++.++...+...+ ..|
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~--~~~------------------------------- 48 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKN--LKY------------------------------- 48 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCC--ccc-------------------------------
Confidence 69999 9999999999999999999999998776654332100 000
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhc-cCCcEEEEcCCcchHHHHHHHHHHhc-ccCCCeEEEec
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL-EDAIFIQESVPEILQIKHQVYRAIDI-FMSSNTILSSS 170 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~-~~aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii~s~ 170 (294)
.++ ......++.++++.+++ .++|+||.|+|... -.++++++.+ ++++++.+++.
T Consensus 49 -----------------~~~----~~~~~~i~~~~~~~~~~~~~~Dliiiavks~~--~~~~l~~l~~~~l~~~~~vv~~ 105 (326)
T PRK14620 49 -----------------LPT----CHLPDNISVKSAIDEVLSDNATCIILAVPTQQ--LRTICQQLQDCHLKKNTPILIC 105 (326)
T ss_pred -----------------CCC----CcCCCCeEEeCCHHHHHhCCCCEEEEEeCHHH--HHHHHHHHHHhcCCCCCEEEEE
Confidence 000 00112355677887766 58999999999764 4578888887 77877755555
Q ss_pred CCCC
Q psy13746 171 TSSF 174 (294)
Q Consensus 171 tSt~ 174 (294)
+.++
T Consensus 106 ~nGi 109 (326)
T PRK14620 106 SKGI 109 (326)
T ss_pred EcCe
Confidence 6665
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-07 Score=79.29 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=99.3
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
+++++|+ |.||.++|..|+++||+|++-.++.+ +++.+.+.+.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~---------------------------------- 46 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALG---------------------------------- 46 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhc----------------------------------
Confidence 3688899 99999999999999999999965544 4444333211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.+++. .+..+|++.+|+||.++|-.. ...+++++...+. +.|+++
T Consensus 47 -------------------------------~~i~~-~~~~dA~~~aDVVvLAVP~~a--~~~v~~~l~~~~~-~KIvID 91 (211)
T COG2085 47 -------------------------------PLITG-GSNEDAAALADVVVLAVPFEA--IPDVLAELRDALG-GKIVID 91 (211)
T ss_pred -------------------------------ccccc-CChHHHHhcCCEEEEeccHHH--HHhHHHHHHHHhC-CeEEEe
Confidence 01222 345568999999999999654 5578888887766 777775
Q ss_pred cCCCCC----------------HH-HHHhhcCCCCceee-eee-----cC-CCCC-CCeEEEecCCCCCHHHHHHHHHHH
Q psy13746 170 STSSFL----------------PS-VLSEHSTHRSQFIV-AHP-----VN-PPYF-IPLVEIVPAAWTSERVITRTREIM 224 (294)
Q Consensus 170 ~tSt~~----------------~~-~ia~~l~~~~~~ig-~h~-----~~-p~~~-~~lveiv~g~~t~~e~~~~~~~ll 224 (294)
.|=.+. .+ .+++.++++ +++. .|- +. -+.. .+...++.| .|.++.+.+.++.
T Consensus 92 ~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~ 168 (211)
T COG2085 92 ATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIPAAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELA 168 (211)
T ss_pred cCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccCHHHhccCCCcCCceeEEEec--CcHHHHHHHHHHH
Confidence 443211 11 233344332 2221 111 11 1112 445556666 4788999999999
Q ss_pred HHcCCeeEEEcc
Q psy13746 225 TEIGMKPVTLTT 236 (294)
Q Consensus 225 ~~lG~~~v~v~~ 236 (294)
+.+|..++.+++
T Consensus 169 ~~iG~~~ld~G~ 180 (211)
T COG2085 169 EDIGFRPLDAGP 180 (211)
T ss_pred HhcCcceeeccc
Confidence 999999999865
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=91.96 Aligned_cols=121 Identities=16% Similarity=0.161 Sum_probs=81.2
Q ss_pred eEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 16 DGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 16 i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
|+|| |.||..+|..++..|+ +|+++|++++.++ +... .
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~~-d------------------------------------- 41 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKAL-D------------------------------------- 41 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHHH-H-------------------------------------
Confidence 6889 9999999999998886 9999999987542 2211 0
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--------------CcchHHHHHHHHHHh
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--------------PEILQIKHQVYRAID 158 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~ 158 (294)
+...... .....+++.++|++ ++++||+||+++ +++..+++++++++.
T Consensus 42 --------l~~~~~~---------~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~ 103 (300)
T cd01339 42 --------ISQAAPI---------LGSDTKVTGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIK 103 (300)
T ss_pred --------HHHhhhh---------cCCCeEEEEcCCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00113466667776 589999999966 678889999999999
Q ss_pred cccCCCeE-EEecCCCCCHHHHHhhcCC-CCceeeee
Q psy13746 159 IFMSSNTI-LSSSTSSFLPSVLSEHSTH-RSQFIVAH 193 (294)
Q Consensus 159 ~~~~~~~i-i~s~tSt~~~~~ia~~l~~-~~~~ig~h 193 (294)
+.++++.+ +++|.+.+....+.+.... |.|++|+-
T Consensus 104 ~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 104 KYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred HHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 99877764 4466554444444444433 45777743
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.3e-08 Score=89.05 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=78.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
++||+|| |.||..+|..++..|+ +|.++|++++.++.....+.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~---------------------------------- 47 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIA---------------------------------- 47 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHH----------------------------------
Confidence 3799999 9999999999999876 99999999887532111110
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--------------CcchHHHHHHHH
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--------------PEILQIKHQVYR 155 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--------------pe~~~~k~~~~~ 155 (294)
.... ......+++.++|++ ++++||+||+++ .++..+++++++
T Consensus 48 -------------~~~~---------~~~~~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~ 104 (307)
T PRK06223 48 -------------EAAP---------VEGFDTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAE 104 (307)
T ss_pred -------------hhhh---------hcCCCcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 0000 001113466677886 589999999986 356678889999
Q ss_pred HHhcccCCCeE-EEecCCCCCHHHHHhhcC-CCCceeee
Q psy13746 156 AIDIFMSSNTI-LSSSTSSFLPSVLSEHST-HRSQFIVA 192 (294)
Q Consensus 156 ~l~~~~~~~~i-i~s~tSt~~~~~ia~~l~-~~~~~ig~ 192 (294)
++.+.+++..+ +++|.+.+....+.+... .|.+++|.
T Consensus 105 ~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 105 GIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred HHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 99998866533 334433222112222222 23566664
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.8e-08 Score=88.84 Aligned_cols=123 Identities=19% Similarity=0.196 Sum_probs=84.5
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||.++|..++..| .++.++|++++.++ +.. ..
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~-lD----------------------------------- 48 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKA-LD----------------------------------- 48 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHH-HH-----------------------------------
Confidence 589999 999999999999988 69999999987754 221 11
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--Ccch------------HHHHHHHHH
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--PEIL------------QIKHQVYRA 156 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--pe~~------------~~k~~~~~~ 156 (294)
+. . .. .......+++.+++++ ++++||+||++. |... .+++++.++
T Consensus 49 ----------l~--~-~~------~~~~~~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~ 108 (319)
T PTZ00117 49 ----------LK--H-FS------TLVGSNINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAES 108 (319)
T ss_pred ----------Hh--h-hc------cccCCCeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 0000112455667888 789999999998 6655 778889999
Q ss_pred HhcccCCC-eEEEecCCCCCHHHHHhhcCCC-Cceeeee
Q psy13746 157 IDIFMSSN-TILSSSTSSFLPSVLSEHSTHR-SQFIVAH 193 (294)
Q Consensus 157 l~~~~~~~-~ii~s~tSt~~~~~ia~~l~~~-~~~ig~h 193 (294)
+.+++++. .|+++|.+.+....+.+....| .+++|++
T Consensus 109 i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 109 VKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred HHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99998766 4555666655444454444444 7888766
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.9e-08 Score=100.67 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCeeEEEcccccccHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 218 TRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVHDGV-LSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 218 ~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~~~Ea~~l~~~~~-~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
+.+..++..+++.+..+ .+.+|++.||++.+++||+++++++|. .+++|||.++..|+|||+...|||+++|.+|.
T Consensus 625 ~~v~~~~~~~~k~p~~~-~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gl 701 (737)
T TIGR02441 625 SDADEILAQYKLPPKAE-VSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGA 701 (737)
T ss_pred HHHHHHHHHhccCcccc-cCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCH
Confidence 44556677788777655 578999999999999999999999999 79999999999999999777899999999883
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-06 Score=79.85 Aligned_cols=199 Identities=10% Similarity=0.085 Sum_probs=114.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|+ |.||..+|..|+++|++|++|++ ++.++...+. |+.+.-.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~-----------------------g~~~~~~-------- 48 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER-----------------------GLVIRSD-------- 48 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC-----------------------CeEEEeC--------
Confidence 479999 99999999999999999999999 7666544321 1100000
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.+ ...-.....++..++..++|+||.|++... -.++++++.+.++++++|++..
T Consensus 49 -------------------~~-----~~~~~~~~~~~~~~~~~~~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 49 -------------------HG-----DAVVPGPVITDPEELTGPFDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred -------------------CC-----eEEecceeecCHHHccCCCCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEee
Confidence 00 000011224566655689999999999754 3567788888888887776544
Q ss_pred CCCC-HHHHHhhcCCCCceee-eee-----cCCCC---CC-CeEEEecC-CCCCHHHHHHHHHHHHHcCCeeEEEccccc
Q psy13746 172 SSFL-PSVLSEHSTHRSQFIV-AHP-----VNPPY---FI-PLVEIVPA-AWTSERVITRTREIMTEIGMKPVTLTTEIR 239 (294)
Q Consensus 172 St~~-~~~ia~~l~~~~~~ig-~h~-----~~p~~---~~-~lveiv~g-~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~ 239 (294)
-++. .+.+...++. .++++ ..+ ..|-. .+ ..+ .++. +....+..+.+..+|...|..+... .|..
T Consensus 103 nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~-~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~-~di~ 179 (305)
T PRK12921 103 NGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRL-TFGEIPGQRSERTRAVRDALAGARLEVVLS-ENIR 179 (305)
T ss_pred CCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcE-EEcCCCCCcCHHHHHHHHHHHhCCCCceec-HHHH
Confidence 4554 3345555432 23332 222 22211 01 111 2221 1233456667778888888665544 3432
Q ss_pred c-----cHHH------------------------HHHHHHHHHHHHHHHcCCCC--HHHHHHHHH
Q psy13746 240 G-----FALN------------------------RIQFAVLNECYHLVHDGVLS--AKDIDRVMS 273 (294)
Q Consensus 240 g-----~v~n------------------------ri~~a~~~Ea~~l~~~~~~~--~~~id~a~~ 273 (294)
. ++.| +++..++.|..++++..|++ .+.++..+.
T Consensus 180 ~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~ 244 (305)
T PRK12921 180 QDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRDDVVEEIVK 244 (305)
T ss_pred HHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 1 2222 22334688999999998876 344555443
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-07 Score=85.13 Aligned_cols=112 Identities=21% Similarity=0.187 Sum_probs=82.4
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||++++.....
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~---------------------------------------- 185 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF---------------------------------------- 185 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------------------
Confidence 3689999 9999999999999999999999987542110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+....++.+++++||+|+.++|...+.+..+.+++.+.++++++++..
T Consensus 186 --------------------------------~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 186 --------------------------------LTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred --------------------------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEc
Confidence 112457888899999999999998876666777888889999998854
Q ss_pred CCC--CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TSS--FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tSt--~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
+-+ +.-..+.+.+. .+....+...+.
T Consensus 234 aRG~~vd~~aL~~aL~~g~i~gaalDV~~ 262 (330)
T PRK12480 234 ARGAVINTPDLIAAVNDGTLLGAAIDTYE 262 (330)
T ss_pred CCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence 444 34445666665 233344455443
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.2e-06 Score=76.02 Aligned_cols=198 Identities=12% Similarity=0.090 Sum_probs=113.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|+++|++|++++++++.++...+. |+.+ +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------------------g~~~---~------- 47 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-----------------------GLRL---E------- 47 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-----------------------CCcc---c-------
Confidence 379999 9999999999999999999999988776544321 0000 0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
++. ....+..+++..+ +.++|+||.|++... ...+++++.+.++++++|++..
T Consensus 48 -------------------~~~-----~~~~~~~~~~~~~-~~~~d~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 48 -------------------DGE-----ITVPVLAADDPAE-LGPQDLVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred -------------------CCc-----eeecccCCCChhH-cCCCCEEEEeccccc--HHHHHHHHhhhcCCCCEEEEec
Confidence 000 0011223455654 489999999999754 3578888988888887666555
Q ss_pred CCCC-HHHHHhhcCCCCceeee-e-----ecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc-
Q psy13746 172 SSFL-PSVLSEHSTHRSQFIVA-H-----PVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG- 240 (294)
Q Consensus 172 St~~-~~~ia~~l~~~~~~ig~-h-----~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g- 240 (294)
-++. .+.+...+.. .++++. . ...|- ..+.....++....+.+..+.+.++|...|....+. .+..+
T Consensus 101 nG~~~~~~l~~~~~~-~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~-~di~~~ 178 (304)
T PRK06522 101 NGVGHLEELAAYIGP-ERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAAAEALADLLNAAGLDVEWS-PDIRTE 178 (304)
T ss_pred CCCCcHHHHHHhcCc-ccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHHHHHHHHHHHhcCCCCCCC-hHHHHH
Confidence 5664 3445554432 233321 1 11121 011111122222222244667777888877664433 23111
Q ss_pred ----cHHH------------------------HHHHHHHHHHHHHHHcCCCC--HHHHHHHHH
Q psy13746 241 ----FALN------------------------RIQFAVLNECYHLVHDGVLS--AKDIDRVMS 273 (294)
Q Consensus 241 ----~v~n------------------------ri~~a~~~Ea~~l~~~~~~~--~~~id~a~~ 273 (294)
++.| +++..++.|...+++..|++ .+++.+.+.
T Consensus 179 ~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~ 241 (304)
T PRK06522 179 IWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVEEVREYVR 241 (304)
T ss_pred HHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 1111 23345688999999987765 344544443
|
|
| >KOG2380|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.8e-06 Score=74.42 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=109.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
.+|||| |.||+=.|.-+.++|+.|...||++ -+.+.+++..
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~----------------------------------- 95 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGS----------------------------------- 95 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcc-----------------------------------
Confidence 579999 9999999999999999999999987 4455443320
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhh-ccCCcEEEEcCCcchHHHHHHHHHHhcc-cCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-LEDAIFIQESVPEILQIKHQVYRAIDIF-MSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a-~~~aDlVieavpe~~~~k~~~~~~l~~~-~~~~~ii~s 169 (294)
...+++.+. -+..|+|+.|+.--. ...+++..-.. ++.+++++.
T Consensus 96 --------------------------------~~ft~lhdlcerhpDvvLlctsils--iekilatypfqrlrrgtlfvd 141 (480)
T KOG2380|consen 96 --------------------------------AKFTLLHDLCERHPDVVLLCTSILS--IEKILATYPFQRLRRGTLFVD 141 (480)
T ss_pred --------------------------------cccccHHHHHhcCCCEEEEEehhhh--HHHHHHhcCchhhccceeEee
Confidence 112233322 368999999985322 34555655444 677899999
Q ss_pred cCCCCCHH--HHHhhcCCCCceeeeeecCCCC-C-----CCeEEEecCCC----CCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 170 STSSFLPS--VLSEHSTHRSQFIVAHPVNPPY-F-----IPLVEIVPAAW----TSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 170 ~tSt~~~~--~ia~~l~~~~~~ig~h~~~p~~-~-----~~lveiv~g~~----t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
.+|...++ ...+.++.-...+..|||.+|. . +-.+.+..... ..++-.+.+.+++.+.|.+.+.+.-+
T Consensus 142 vlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegckmVemS~e 221 (480)
T KOG2380|consen 142 VLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMSYE 221 (480)
T ss_pred eeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCeEEEEEee
Confidence 88875443 4455666566788999998764 1 21333333332 34889999999999999999988655
Q ss_pred ccccH
Q psy13746 238 IRGFA 242 (294)
Q Consensus 238 ~~g~v 242 (294)
.+..+
T Consensus 222 eHDki 226 (480)
T KOG2380|consen 222 EHDKI 226 (480)
T ss_pred ccccc
Confidence 56543
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-06 Score=87.03 Aligned_cols=107 Identities=12% Similarity=0.137 Sum_probs=86.4
Q ss_pred EEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCC--HHHHHhhcCC-CCceeeeeecCCCC------------CCCe
Q psy13746 139 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTH-RSQFIVAHPVNPPY------------FIPL 203 (294)
Q Consensus 139 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~--~~~ia~~l~~-~~~~ig~h~~~p~~------------~~~l 203 (294)
||.|+|... ..++++++.++++++++|++.+|+.. +..+.+.+.. +.+|+|.|||.... .+..
T Consensus 1 vila~Pv~~--~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQ--TGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHH--HHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 678999765 45899999999999999999988753 2344444442 35799999998763 3568
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHH
Q psy13746 204 VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 204 veiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~ 247 (294)
+.+++.+.++++.+++++++++.+|.+++.+.++.|..++..+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iS 122 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVS 122 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHh
Confidence 88999998999999999999999999999998888887766664
|
|
| >KOG2653|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.8e-06 Score=74.75 Aligned_cols=195 Identities=18% Similarity=0.225 Sum_probs=126.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
..|+.| ++||..++.+.+.+||.|.+|+|+..+.++....-.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea------------------------------------ 50 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA------------------------------------ 50 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh------------------------------------
Confidence 578899 999999999999999999999999999887544211
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhh---ccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC---LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a---~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+| ..+....++++. ++.-..||.-+..-.. ...++++|.+++.++.||+
T Consensus 51 ---------------k~------------~~i~ga~S~ed~v~klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiII 102 (487)
T KOG2653|consen 51 ---------------KG------------TKIIGAYSLEDFVSKLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIII 102 (487)
T ss_pred ---------------cC------------CcccCCCCHHHHHHhcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEE
Confidence 11 012333444433 4456666665544332 3567889999999988888
Q ss_pred ecCCC-CCHH--HHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCe-------eEEEccc
Q psy13746 169 SSTSS-FLPS--VLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMK-------PVTLTTE 237 (294)
Q Consensus 169 s~tSt-~~~~--~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~-------~v~v~~~ 237 (294)
+..-+ ++-+ ...+..+...-|+|...-......+ -..+||| +++++...++++|+.+..+ ..+++..
T Consensus 103 DGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~ 180 (487)
T KOG2653|consen 103 DGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEG 180 (487)
T ss_pred eCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCC
Confidence 65533 3211 2222222334466654432211100 1227888 7999999999999988643 2566544
Q ss_pred ccccHH----HHHH---HHHHHHHHHHHHc-CCCCHHHHHHHHHc
Q psy13746 238 IRGFAL----NRIQ---FAVLNECYHLVHD-GVLSAKDIDRVMSE 274 (294)
Q Consensus 238 ~~g~v~----nri~---~a~~~Ea~~l~~~-~~~~~~~id~a~~~ 274 (294)
+.|..+ |-+= ..++.||+.+++. ++.+-+++.++...
T Consensus 181 GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~ 225 (487)
T KOG2653|consen 181 GAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDD 225 (487)
T ss_pred CCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 555433 3222 4689999999999 88899998888764
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-06 Score=79.07 Aligned_cols=113 Identities=11% Similarity=0.144 Sum_probs=80.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|++|.+||++++......
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~--------------------------------------- 176 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ--------------------------------------- 176 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce---------------------------------------
Confidence 3789999 99999999999999999999998753311000
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
......++++++++||+|+.++|.+.+.+.-+-++....++++++++ |
T Consensus 177 -------------------------------~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N 224 (312)
T PRK15469 177 -------------------------------SFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-N 224 (312)
T ss_pred -------------------------------eecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-E
Confidence 00112478888999999999999988766555566777899999887 5
Q ss_pred CC-C--CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TS-S--FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tS-t--~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
++ + +.-+.+.+.+. ...+..+...|.
T Consensus 225 ~aRG~vVde~aL~~aL~~g~i~gaalDVf~ 254 (312)
T PRK15469 225 LARGVHVVEDDLLAALDSGKVKGAMLDVFS 254 (312)
T ss_pred CCCccccCHHHHHHHHhcCCeeeEEecCCC
Confidence 55 2 44446666665 333444455443
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-07 Score=93.15 Aligned_cols=58 Identities=26% Similarity=0.274 Sum_probs=54.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 237 EIRGFALNRIQFAVLNECYHLVHDGV-LSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 237 ~~~g~v~nri~~a~~~Ea~~l~~~~~-~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
..+|++.||++.++++|+++++++|. .+++|||.++..|+|||+...|||+++|.+|.
T Consensus 606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gl 664 (699)
T TIGR02440 606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGA 664 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCH
Confidence 46789999999999999999999997 89999999999999999777899999999883
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.2e-07 Score=73.79 Aligned_cols=119 Identities=15% Similarity=0.084 Sum_probs=74.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
-++|+|+ |.||.+++..++..| ++|+++|++++..++..+.+..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~--------------------------------- 65 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE--------------------------------- 65 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh---------------------------------
Confidence 3689999 999999999999986 8999999999887654432210
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH-HHHHHHHHHhcccCCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ-IKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~-~k~~~~~~l~~~~~~~~ii~ 168 (294)
.+ . .....+..+.++++|+||.|+|.... .....+. ...++++++++
T Consensus 66 -----------------~~-~------------~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~ 113 (155)
T cd01065 66 -----------------LG-I------------AIAYLDLEELLAEADLIINTTPVGMKPGDELPLP--PSLLKPGGVVY 113 (155)
T ss_pred -----------------cc-c------------ceeecchhhccccCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEE
Confidence 00 0 01123555567999999999998763 1111111 12356788887
Q ss_pred ecCCCCCHHHHHhhcC-CCCceeeeeecC
Q psy13746 169 SSTSSFLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
+.++....+.+.+.+. +..+++.+|+|.
T Consensus 114 D~~~~~~~~~l~~~~~~~g~~~v~g~~~~ 142 (155)
T cd01065 114 DVVYNPLETPLLKEARALGAKTIDGLEML 142 (155)
T ss_pred EcCcCCCCCHHHHHHHHCCCceeCCHHHH
Confidence 6655433234444333 345666666553
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.9e-06 Score=78.52 Aligned_cols=102 Identities=25% Similarity=0.217 Sum_probs=74.8
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+.+|..+...|++|.+||+++.... ..+
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~------------------------------------- 190 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKE------------------------------------- 190 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHH-------------------------------------
Confidence 34799999 99999999999999999999999864321 000
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| .. ..++.+.+++||+|+.++|.+.+.+.-+-++..+.++++++++
T Consensus 191 -----------------~~--------------~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI- 237 (333)
T PRK13243 191 -----------------LG--------------AE-YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILV- 237 (333)
T ss_pred -----------------cC--------------CE-ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-
Confidence 01 11 2468888999999999999887765555567777899999987
Q ss_pred cCCC---CCHHHHHhhcC
Q psy13746 170 STSS---FLPSVLSEHST 184 (294)
Q Consensus 170 ~tSt---~~~~~ia~~l~ 184 (294)
|+|. +.-..+.+.+.
T Consensus 238 N~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 238 NTARGKVVDTKALVKALK 255 (333)
T ss_pred ECcCchhcCHHHHHHHHH
Confidence 5553 33345656554
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.6e-07 Score=92.57 Aligned_cols=58 Identities=24% Similarity=0.244 Sum_probs=54.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 237 EIRGFALNRIQFAVLNECYHLVHDGV-LSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 237 ~~~g~v~nri~~a~~~Ea~~l~~~~~-~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
..+|++.||++.++++|+++++++|. .+++|||.++..|+|||....|||+++|.+|.
T Consensus 613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gl 671 (708)
T PRK11154 613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGA 671 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCH
Confidence 46899999999999999999999997 89999999999999999767799999999883
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.3e-05 Score=70.84 Aligned_cols=203 Identities=12% Similarity=0.129 Sum_probs=113.7
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|..++|+|| |.||+.+|..|+++|++|+++.|++. +...+. |..+..
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~-----------------------g~~~~~------ 51 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVREN-----------------------GLQVDS------ 51 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhC-----------------------CeEEEe------
Confidence 445789999 99999999999999999999999863 221110 110000
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
..+ ..........++.+ ....+|+||.|++... -.+++..+.+.++++++|+
T Consensus 52 ---------------------~~~----~~~~~~~~~~~~~~-~~~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv 103 (313)
T PRK06249 52 ---------------------VHG----DFHLPPVQAYRSAE-DMPPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVL 103 (313)
T ss_pred ---------------------CCC----CeeecCceEEcchh-hcCCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEE
Confidence 000 00001122334444 4678999999998754 2467788888888887766
Q ss_pred ecCCCCCH-HHHHhhcCCCCceeee-ee-----cCCC---CCC-CeEEEecCCCCC-----HHHHHHHHHHHHHcCCeeE
Q psy13746 169 SSTSSFLP-SVLSEHSTHRSQFIVA-HP-----VNPP---YFI-PLVEIVPAAWTS-----ERVITRTREIMTEIGMKPV 232 (294)
Q Consensus 169 s~tSt~~~-~~ia~~l~~~~~~ig~-h~-----~~p~---~~~-~lveiv~g~~t~-----~e~~~~~~~ll~~lG~~~v 232 (294)
+..-++.. +.++..++ +.+++++ .+ ..|. +.+ ..+.+-.-+..+ .+..+.+..+|+..|..+.
T Consensus 104 ~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~ 182 (313)
T PRK06249 104 LLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQ 182 (313)
T ss_pred EecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCce
Confidence 55445543 34555553 2344432 22 2221 011 112221111112 4566778888888887665
Q ss_pred EEcccccc-----cHHH------------------------HHHHHHHHHHHHHHHcCCCC--HHHHHHHHHc
Q psy13746 233 TLTTEIRG-----FALN------------------------RIQFAVLNECYHLVHDGVLS--AKDIDRVMSE 274 (294)
Q Consensus 233 ~v~~~~~g-----~v~n------------------------ri~~a~~~Ea~~l~~~~~~~--~~~id~a~~~ 274 (294)
.. .|... ++.| .++..++.|+.++++..|++ .+.++..+..
T Consensus 183 ~~-~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~ 254 (313)
T PRK06249 183 AM-PDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAACGHTLPEGYADHMLAV 254 (313)
T ss_pred eC-chHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Confidence 54 34322 1111 12234688999999988776 3334555443
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-06 Score=78.19 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=65.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||..+|..++..|+ +|.++|++++. .++... . .|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l-~~g~a~-d----~~----------------------------- 46 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGI-PQGKAL-D----MY----------------------------- 46 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCCh-hHHHHH-h----hh-----------------------------
Confidence 489999 9999999999999887 89999997663 332210 0 00
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCc--------------chHHHHHHHHH
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE--------------ILQIKHQVYRA 156 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe--------------~~~~k~~~~~~ 156 (294)
+.+. ......++++++|+++ +++||+||.|++. |..+.+++.++
T Consensus 47 ---------------~~~~------~~~~~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~ 104 (305)
T TIGR01763 47 ---------------EASP------VGGFDTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGR 104 (305)
T ss_pred ---------------hhhh------ccCCCcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 0000 0011245777889986 8999999999882 33445566677
Q ss_pred HhcccCCCeEEE
Q psy13746 157 IDIFMSSNTILS 168 (294)
Q Consensus 157 l~~~~~~~~ii~ 168 (294)
+.++.+ +++|+
T Consensus 105 I~~~~p-~~~iI 115 (305)
T TIGR01763 105 IMEHSP-NPIIV 115 (305)
T ss_pred HHHHCC-CeEEE
Confidence 888764 55444
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.6e-06 Score=74.59 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=90.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|.+|...|++|++||+.....+.+..
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~-------------------------------------- 57 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA-------------------------------------- 57 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH--------------------------------------
Confidence 3689999 999999999999999999999976433222111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH-HHHhcccCCCeEEEe
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILSS 169 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~s 169 (294)
.| ... .++.++++.||+|+.++|.+.+ + .++ .++.+.++++++++.
T Consensus 58 ----------------~G--------------~~v-~sl~Eaak~ADVV~llLPd~~t-~-~V~~~eil~~MK~GaiL~f 104 (335)
T PRK13403 58 ----------------DG--------------FEV-MSVSEAVRTAQVVQMLLPDEQQ-A-HVYKAEVEENLREGQMLLF 104 (335)
T ss_pred ----------------cC--------------CEE-CCHHHHHhcCCEEEEeCCChHH-H-HHHHHHHHhcCCCCCEEEE
Confidence 12 122 3788899999999999997543 4 555 578899999998864
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCCC----------C----CeEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYF----------I----PLVEIVPAAWTSERVITRTREIMTEIGMK 230 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~----------~----~lveiv~g~~t~~e~~~~~~~ll~~lG~~ 230 (294)
+-+..+.. .... |...+.+-...|-.- + .++-+-.. .+..+.+.+..+...+|..
T Consensus 105 -~hgfni~~--~~i~-pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd--~sg~a~~~ala~a~~iG~~ 173 (335)
T PRK13403 105 -SHGFNIHF--GQIN-PPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQD--ATGTALHVALAYAKGVGCT 173 (335)
T ss_pred -CCCcceec--Ccee-CCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEEC--CCCcHHHHHHHHHHHcCCC
Confidence 33443321 1111 222233222333210 1 13334443 3445678888999999976
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.6e-06 Score=76.28 Aligned_cols=115 Identities=13% Similarity=0.004 Sum_probs=79.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|++|+.||++....+...+
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~-------------------------------------- 233 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQE-------------------------------------- 233 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhh--------------------------------------
Confidence 3689999 999999999999999999999998632211100
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| ++...+++++++.||+|+.++|.+.+.+.-+=++....++++++++ |
T Consensus 234 ----------------~g--------------~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N 282 (385)
T PRK07574 234 ----------------LG--------------LTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-N 282 (385)
T ss_pred ----------------cC--------------ceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-E
Confidence 01 2334678889999999999999887765444356777799999987 5
Q ss_pred CCC---CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TSS---FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tSt---~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
++. +.-..+.+.+. ......++..+.
T Consensus 283 ~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~ 312 (385)
T PRK07574 283 TARGKIVDRDAVVRALESGHLAGYAGDVWF 312 (385)
T ss_pred CCCCchhhHHHHHHHHHhCCccEEEEecCC
Confidence 553 23335655554 233334455443
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-06 Score=77.28 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=70.3
Q ss_pred eEEE---ccccHHHHHHHHHCC----CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 16 DGII---GLIGQAWAMIFASAG----YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 16 i~ii---G~mG~~iA~~~~~~G----~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|+|| |.||..+|..++..| .+|.++|+++++++.....+.+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~-------------------------------- 48 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQD-------------------------------- 48 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHH--------------------------------
Confidence 5778 889999999999999 7999999999877654433221
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEE--------------cCCcchHHHHHHH
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE--------------SVPEILQIKHQVY 154 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVie--------------avpe~~~~k~~~~ 154 (294)
+... . ...+++.++|+.+++++||+||+ .+.++..+++++.
T Consensus 49 ---------------~~~~---------~-~~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~ 103 (263)
T cd00650 49 ---------------AVEP---------L-ADIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIG 103 (263)
T ss_pred ---------------hhhh---------c-cCcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHH
Confidence 1000 0 11346777887678999999999 5666778899999
Q ss_pred HHHhcccCCCeEEE
Q psy13746 155 RAIDIFMSSNTILS 168 (294)
Q Consensus 155 ~~l~~~~~~~~ii~ 168 (294)
+++.+++ +++++.
T Consensus 104 ~~i~~~~-p~a~~i 116 (263)
T cd00650 104 DNIEKYS-PDAWII 116 (263)
T ss_pred HHHHHHC-CCeEEE
Confidence 9999988 555554
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.3e-06 Score=68.57 Aligned_cols=90 Identities=22% Similarity=0.251 Sum_probs=64.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |..|.+.|.+|...|++|++-.+..+ ..+++++
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~-------------------------------------- 46 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKA-------------------------------------- 46 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHH--------------------------------------
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHH--------------------------------------
Confidence 689999 99999999999999999999999876 4443332
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH-HHHhcccCCCeEEEe
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILSS 169 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~s 169 (294)
.| +. ..+.+|+++.+|+|+..+|+... .+++ ++|.+.++++.++..
T Consensus 47 ----------------~G--------------f~-v~~~~eAv~~aDvV~~L~PD~~q--~~vy~~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 47 ----------------DG--------------FE-VMSVAEAVKKADVVMLLLPDEVQ--PEVYEEEIAPNLKPGATLVF 93 (165)
T ss_dssp ----------------TT---------------E-CCEHHHHHHC-SEEEE-S-HHHH--HHHHHHHHHHHS-TT-EEEE
T ss_pred ----------------CC--------------Ce-eccHHHHHhhCCEEEEeCChHHH--HHHHHHHHHhhCCCCCEEEe
Confidence 23 22 34778899999999999998763 4676 789999999998864
Q ss_pred cCCCCC
Q psy13746 170 STSSFL 175 (294)
Q Consensus 170 ~tSt~~ 175 (294)
+.+..
T Consensus 94 -ahGfn 98 (165)
T PF07991_consen 94 -AHGFN 98 (165)
T ss_dssp -SSSHH
T ss_pred -CCcch
Confidence 44443
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-05 Score=75.13 Aligned_cols=116 Identities=11% Similarity=0.022 Sum_probs=81.1
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+.+|..+...|++|..||++....+...+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~------------------------------------- 240 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE------------------------------------- 240 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhh-------------------------------------
Confidence 34689999 999999999999999999999998532211100
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| +...+++++.+++||+|+.++|.+.+.+.-+-+++...++++++|+
T Consensus 241 -----------------~g--------------~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI- 288 (386)
T PLN03139 241 -----------------TG--------------AKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV- 288 (386)
T ss_pred -----------------cC--------------ceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-
Confidence 01 2334688888999999999999887765555467788899999987
Q ss_pred cCCC---CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 170 STSS---FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 170 ~tSt---~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
|++. +.-+.+.+.+. ......++..|.
T Consensus 289 N~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~ 319 (386)
T PLN03139 289 NNARGAIMDTQAVADACSSGHIGGYGGDVWY 319 (386)
T ss_pred ECCCCchhhHHHHHHHHHcCCceEEEEcCCC
Confidence 5653 23335666654 233334455443
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=72.82 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=76.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|++|++||++... +
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----~-------------------------------------- 158 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----D-------------------------------------- 158 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----c--------------------------------------
Confidence 3789999 999999999888889999999987421 0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
|. .....++++.+++||+|+.++|.+.+.+.-+-++....++++++++ |
T Consensus 159 -----------------~~-------------~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N 207 (303)
T PRK06436 159 -----------------GI-------------SSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAII-N 207 (303)
T ss_pred -----------------Cc-------------ccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-E
Confidence 00 0012467888999999999999887755444456667789999987 5
Q ss_pred CCC---CCHHHHHhhcCC-CCceeeeeec
Q psy13746 171 TSS---FLPSVLSEHSTH-RSQFIVAHPV 195 (294)
Q Consensus 171 tSt---~~~~~ia~~l~~-~~~~ig~h~~ 195 (294)
+|. +.-..+.+.+.. .....+...+
T Consensus 208 ~sRG~~vd~~aL~~aL~~g~i~~a~lDV~ 236 (303)
T PRK06436 208 VARADVVDKNDMLNFLRNHNDKYYLSDVW 236 (303)
T ss_pred CCCccccCHHHHHHHHHcCCceEEEEccC
Confidence 553 334456666652 3344444444
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-06 Score=87.90 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=50.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 239 RGFALNRIQFAVLNECYHLVHDGV-LSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 239 ~g~v~nri~~a~~~Ea~~l~~~~~-~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
...+.||++.++++|+++++++|. ++++|||.+++.|+|||+...|||+++|.+|
T Consensus 624 ~~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~G 679 (715)
T PRK11730 624 DEEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLG 679 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhC
Confidence 345899999999999999999996 8999999999999999977789999999988
|
|
| >KOG2711|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.4e-05 Score=70.95 Aligned_cols=179 Identities=12% Similarity=0.083 Sum_probs=110.1
Q ss_pred CCCCCccceEEE--ccccHHHHHHHHHC--CC-----eEEEEeCChHHHH---HHHHHHHhhhhhhhhcccccCCCCCcc
Q psy13746 8 PAQGGFYPDGII--GLIGQAWAMIFASA--GY-----KVSLYDVLSEQIE---NAKNTIQHTLQDYHQKGCLKGSLSPAH 75 (294)
Q Consensus 8 ~~~~~~~~i~ii--G~mG~~iA~~~~~~--G~-----~V~~~d~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~ 75 (294)
+.++.-.||+|| |.||++||..+... ++ +|.+|-..++.-. .+.+-|+.+|++.
T Consensus 16 ~~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~-------------- 81 (372)
T KOG2711|consen 16 KAERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENV-------------- 81 (372)
T ss_pred chhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccc--------------
Confidence 345555789999 99999999988763 23 6888877665544 5666666655543
Q ss_pred CCceeEEeecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH
Q psy13746 76 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR 155 (294)
Q Consensus 76 ~~~~v~~~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~ 155 (294)
++| ..-..+.++..++|+.+++.|||++|..+|-.. ...+++
T Consensus 82 -----------------------KYl-------------pg~~lP~NvvAv~dl~ea~~dADilvf~vPhQf--~~~ic~ 123 (372)
T KOG2711|consen 82 -----------------------KYL-------------PGIKLPENVVAVPDLVEAAKDADILVFVVPHQF--IPRICE 123 (372)
T ss_pred -----------------------ccc-------------CCccCCCCeEecchHHHHhccCCEEEEeCChhh--HHHHHH
Confidence 222 112334567888999999999999999999754 568999
Q ss_pred HHhcccCCCeEEEecCCCCCHH-----------HHHhhcCCCCceeeeeecCCC-CCCCeEEEecCCCCCHHHHHHHHHH
Q psy13746 156 AIDIFMSSNTILSSSTSSFLPS-----------VLSEHSTHRSQFIVAHPVNPP-YFIPLVEIVPAAWTSERVITRTREI 223 (294)
Q Consensus 156 ~l~~~~~~~~ii~s~tSt~~~~-----------~ia~~l~~~~~~ig~h~~~p~-~~~~lveiv~g~~t~~e~~~~~~~l 223 (294)
+|..++++++..+|.+-++... .|.+.+.-|-.++.+--+.+. ......|-+-|...+.+.-..++.+
T Consensus 124 ~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~l 203 (372)
T KOG2711|consen 124 QLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIASEVANEKFCETTIGYKDKKEAGILLKKL 203 (372)
T ss_pred HHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHHHHHhccccceeEeccchhhcchHHHHH
Confidence 9999999999887776665421 223334333333322211110 0122333333322233332346677
Q ss_pred HHHcCCeeEEEccccc
Q psy13746 224 MTEIGMKPVTLTTEIR 239 (294)
Q Consensus 224 l~~lG~~~v~v~~~~~ 239 (294)
|+.--.++..+ .|..
T Consensus 204 f~~p~FrV~~~-~D~~ 218 (372)
T KOG2711|consen 204 FRTPYFRVVVV-EDAD 218 (372)
T ss_pred hCCCceEEEEe-ccch
Confidence 77766666665 3444
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.7e-06 Score=75.02 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=73.8
Q ss_pred ccceEEE--ccccHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
-++|+|| |.||+++|..++ ..|++|+.||+++..... .
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--~------------------------------------- 186 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--T------------------------------------- 186 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--h-------------------------------------
Confidence 3689999 999999999995 468899999998643210 0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH-HHHhcccCCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~ 168 (294)
+ +...+++++++++||+|+.++|.....+ .++ +++.+.++++++|+
T Consensus 187 ------------------~--------------~~~~~~l~ell~~aDvIvl~lP~t~~t~-~li~~~~l~~mk~gailI 233 (332)
T PRK08605 187 ------------------Y--------------VDYKDTIEEAVEGADIVTLHMPATKYNH-YLFNADLFKHFKKGAVFV 233 (332)
T ss_pred ------------------h--------------ccccCCHHHHHHhCCEEEEeCCCCcchh-hhcCHHHHhcCCCCcEEE
Confidence 0 1234578888999999999999876543 333 45667789999887
Q ss_pred ecCCCCC--HHHHHhhcC-CCCceeeeeec
Q psy13746 169 SSTSSFL--PSVLSEHST-HRSQFIVAHPV 195 (294)
Q Consensus 169 s~tSt~~--~~~ia~~l~-~~~~~ig~h~~ 195 (294)
..+.+.. ...+.+.+. .+....+...+
T Consensus 234 N~sRG~~vd~~aL~~aL~~g~i~gaalDV~ 263 (332)
T PRK08605 234 NCARGSLVDTKALLDALDNGLIKGAALDTY 263 (332)
T ss_pred ECCCCcccCHHHHHHHHHhCCeeEEEEecc
Confidence 4443432 334555553 23333344443
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=67.88 Aligned_cols=113 Identities=20% Similarity=0.182 Sum_probs=74.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.+|+.+|..+...|.+|+.||++........+
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~--------------------------------------- 77 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE--------------------------------------- 77 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH---------------------------------------
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccc---------------------------------------
Confidence 689999 999999999999999999999999876441111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.+ . ...++++.++.||+|+.++|-+.+-+.-+=++....++++++++ |+
T Consensus 78 ---------------~~--------------~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv-N~ 126 (178)
T PF02826_consen 78 ---------------FG--------------V-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV-NV 126 (178)
T ss_dssp ---------------TT--------------E-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE-ES
T ss_pred ---------------cc--------------c-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEE-ec
Confidence 01 1 23588889999999999999765433222244556688999987 55
Q ss_pred C-C--CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 172 S-S--FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 172 S-t--~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
+ + +.-+.+.+.+.. +....+...+.
T Consensus 127 aRG~~vde~aL~~aL~~g~i~ga~lDV~~ 155 (178)
T PF02826_consen 127 ARGELVDEDALLDALESGKIAGAALDVFE 155 (178)
T ss_dssp SSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred cchhhhhhhHHHHHHhhccCceEEEECCC
Confidence 5 3 444466666653 33334444443
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.7e-05 Score=75.49 Aligned_cols=129 Identities=22% Similarity=0.176 Sum_probs=84.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|++|+.||+.... +...+
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~-------------------------------------- 178 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQ-------------------------------------- 178 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHh--------------------------------------
Confidence 3689999 999999999999999999999985321 11100
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| ....+++.+.+++||+|+.++|.+.+.+.-+=++..+.++++++++ |
T Consensus 179 ----------------~g--------------~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N 227 (525)
T TIGR01327 179 ----------------LG--------------VELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIV-N 227 (525)
T ss_pred ----------------cC--------------CEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEE-E
Confidence 01 2334578888999999999999877654333345566789999887 5
Q ss_pred CC-C--CCHHHHHhhcC-CCCceeeeeecC--CC-----CCCCeEEEecCCC
Q psy13746 171 TS-S--FLPSVLSEHST-HRSQFIVAHPVN--PP-----YFIPLVEIVPAAW 211 (294)
Q Consensus 171 tS-t--~~~~~ia~~l~-~~~~~ig~h~~~--p~-----~~~~lveiv~g~~ 211 (294)
++ + +.-..+.+.+. ......+...|. |+ +..+-+.++|+-.
T Consensus 228 ~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia 279 (525)
T TIGR01327 228 CARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLG 279 (525)
T ss_pred cCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCcc
Confidence 55 3 34446666664 333444454443 32 2234556666543
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4e-05 Score=70.59 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=77.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|||| |.+|+.+|..+..-|++|++||+ .+......
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~---------------------------------------- 182 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV---------------------------------------- 182 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc----------------------------------------
Confidence 689999 99999999999999999999999 43321110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| ....+++++.++.||+|...+|...+-+.-+=++....++++++++ |
T Consensus 183 ----------------~~--------------~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N 231 (324)
T COG0111 183 ----------------DG--------------VVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILI-N 231 (324)
T ss_pred ----------------cc--------------ceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-E
Confidence 01 1234679999999999999999987644333245556688999876 7
Q ss_pred CCC---CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 171 TSS---FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 171 tSt---~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
++- +.-+.+.+.+.. ..+-.+...|.
T Consensus 232 ~aRG~vVde~aL~~AL~~G~i~gA~lDVf~ 261 (324)
T COG0111 232 AARGGVVDEDALLAALDSGKIAGAALDVFE 261 (324)
T ss_pred CCCcceecHHHHHHHHHcCCcceEEecCCC
Confidence 773 344466666653 23334444443
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.1e-05 Score=63.76 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=56.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+++.|+ |..|+++|+.|+..|.+|+++|++|-+.-++..
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~--------------------------------------- 64 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAM--------------------------------------- 64 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH---------------------------------------
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh---------------------------------------
Confidence 567777 999999999999999999999999965433221
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.| +.. .+++++++.+|++|.+.-....+..+-| +.+++++|+++.+
T Consensus 65 ---------------dG--------------f~v-~~~~~a~~~adi~vtaTG~~~vi~~e~~----~~mkdgail~n~G 110 (162)
T PF00670_consen 65 ---------------DG--------------FEV-MTLEEALRDADIFVTATGNKDVITGEHF----RQMKDGAILANAG 110 (162)
T ss_dssp ---------------TT---------------EE-E-HHHHTTT-SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESS
T ss_pred ---------------cC--------------cEe-cCHHHHHhhCCEEEECCCCccccCHHHH----HHhcCCeEEeccC
Confidence 12 232 3677899999999998766433333333 3478899998655
Q ss_pred C
Q psy13746 172 S 172 (294)
Q Consensus 172 S 172 (294)
+
T Consensus 111 h 111 (162)
T PF00670_consen 111 H 111 (162)
T ss_dssp S
T ss_pred c
Confidence 5
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >KOG2666|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00028 Score=63.59 Aligned_cols=208 Identities=16% Similarity=0.188 Sum_probs=126.5
Q ss_pred cceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.||.-| |++|.+-+...+. +- .+|+++|++..++..=.. .++|.| +
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wns---d~lpiy----------------------e----- 51 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNS---DKLPIY----------------------E----- 51 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccC---CCCccc----------------------C-----
Confidence 567777 9999987766554 43 589999999888764211 223333 1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCc-------------chHHHHHHHHH
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE-------------ILQIKHQVYRA 156 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe-------------~~~~k~~~~~~ 156 (294)
..|++.+++- +| .++-+++|.+++++.+|+||.++-. |+..-....+.
T Consensus 52 ---------pgldevv~~c--rg--------knlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ 112 (481)
T KOG2666|consen 52 ---------PGLDEVVKQC--RG--------KNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARM 112 (481)
T ss_pred ---------CCHHHHHHHh--cC--------CceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHH
Confidence 1222223221 11 3577899999999999999998754 33333455566
Q ss_pred HhcccCCCeEEEecCCCCCHH---HHHhhcCCCCceeeeee--c-CCCC----------CCCeEEEecCCCCCH--HHHH
Q psy13746 157 IDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHP--V-NPPY----------FIPLVEIVPAAWTSE--RVIT 218 (294)
Q Consensus 157 l~~~~~~~~ii~s~tSt~~~~---~ia~~l~~~~~~ig~h~--~-~p~~----------~~~lveiv~g~~t~~--e~~~ 218 (294)
|.+......|++ --|++++. .+...+.|... |.+| + ||.. .++--.+++|..|.+ ++++
T Consensus 113 ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~ 189 (481)
T KOG2666|consen 113 IADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQ 189 (481)
T ss_pred HHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--CceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHH
Confidence 777777788876 56777765 34444543222 3333 1 2211 123334788876543 4466
Q ss_pred HHHHHHHHcCCeeEEE-c----ccccccHHHHHHHH---HHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 219 RTREIMTEIGMKPVTL-T----TEIRGFALNRIQFA---VLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 219 ~~~~ll~~lG~~~v~v-~----~~~~g~v~nri~~a---~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
.+..+++.|--+--++ + .+-+.+.+|..++. -+|..-++++.-|++..++..++.
T Consensus 190 ~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatgadv~eva~avg 252 (481)
T KOG2666|consen 190 ALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATGADVSEVAYAVG 252 (481)
T ss_pred HHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCHHHHHHHhc
Confidence 6677777775432222 1 12234456666542 466777899999999999988873
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.05 E-value=6e-06 Score=83.74 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=50.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 239 RGFALNRIQFAVLNECYHLVHDG-VLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 239 ~g~v~nri~~a~~~Ea~~l~~~~-~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
...+.||++.+++||+++++++| ..+++|||.++..|+|||....|||+++|.+|
T Consensus 624 ~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~G 679 (714)
T TIGR02437 624 DEEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIG 679 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhC
Confidence 34589999999999999999999 88899999999999999976779999999987
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.8e-05 Score=65.98 Aligned_cols=116 Identities=18% Similarity=0.163 Sum_probs=69.9
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC-eEEEEeCC---hHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY-KVSLYDVL---SEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
-.+|+|+ |.||+.+|..|++.|+ +++++|.+ ++.+.+- .|- .-|+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq---------~~~-------------------~~~iG 72 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQ---------QYK-------------------ASQVG 72 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccc---------cCC-------------------hhhCC
Confidence 3589999 9999999999999998 79999999 5555431 010 00111
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
....+.+. +.+.++. ...........++ .+++.+.++++|+||+| .++.+.|..++.++.+..+...+
T Consensus 73 ~~Ka~~~~----~~l~~in------p~~~i~~~~~~i~-~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~i 140 (200)
T TIGR02354 73 EPKTEALK----ENISEIN------PYTEIEAYDEKIT-EENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYL 140 (200)
T ss_pred CHHHHHHH----HHHHHHC------CCCEEEEeeeeCC-HhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcE
Confidence 11111111 2222110 0000001111121 13445568899999999 68889998889998887777666
Q ss_pred EE
Q psy13746 167 LS 168 (294)
Q Consensus 167 i~ 168 (294)
++
T Consensus 141 i~ 142 (200)
T TIGR02354 141 IA 142 (200)
T ss_pred EE
Confidence 65
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.3e-05 Score=73.03 Aligned_cols=128 Identities=23% Similarity=0.202 Sum_probs=84.3
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|++|++||+.... +...+
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~-------------------------------------- 180 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQ-------------------------------------- 180 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHh--------------------------------------
Confidence 3689999 999999999999999999999986421 11100
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| .... ++++.+++||+|+.++|...+.+.-+-++..+.++++++++ |
T Consensus 181 ----------------~g--------------~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lI-N 228 (526)
T PRK13581 181 ----------------LG--------------VELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRII-N 228 (526)
T ss_pred ----------------cC--------------CEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEE-E
Confidence 01 1223 68888999999999999887654433356777789999987 5
Q ss_pred CC-C--CCHHHHHhhcC-CCCceeeeeecC--CC-----CCCCeEEEecCCC
Q psy13746 171 TS-S--FLPSVLSEHST-HRSQFIVAHPVN--PP-----YFIPLVEIVPAAW 211 (294)
Q Consensus 171 tS-t--~~~~~ia~~l~-~~~~~ig~h~~~--p~-----~~~~lveiv~g~~ 211 (294)
++ + +.-..+.+.+. ......+...|. |+ +..+-+.++|+-.
T Consensus 229 ~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia 280 (526)
T PRK13581 229 CARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLG 280 (526)
T ss_pred CCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccc
Confidence 54 3 34446666664 233334444433 32 2234556777643
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=67.81 Aligned_cols=126 Identities=12% Similarity=-0.032 Sum_probs=78.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|.+|++||++..........+. ..+
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~---~~~----------------------------- 206 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIP---NGD----------------------------- 206 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccc---ccc-----------------------------
Confidence 3689999 999999999999999999999997432111000000 000
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
...+... .....++.+++++||+|+.++|-+.+-+.-+-++....++++++|+ |
T Consensus 207 ----------~~~~~~~---------------~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lI-N 260 (347)
T PLN02928 207 ----------VDDLVDE---------------KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLV-N 260 (347)
T ss_pred ----------ccccccc---------------cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEE-E
Confidence 0000000 0013578889999999999999877654333356667789999987 5
Q ss_pred CC-C--CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 171 TS-S--FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 171 tS-t--~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
++ + +.-+.+.+.+.. .....+...+.
T Consensus 261 vaRG~lVde~AL~~AL~~g~i~gAaLDV~~ 290 (347)
T PLN02928 261 IARGGLLDYDAVLAALESGHLGGLAIDVAW 290 (347)
T ss_pred CCCccccCHHHHHHHHHcCCeeEEEEccCC
Confidence 54 3 444466666652 33334455543
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.6e-05 Score=69.76 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=27.9
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
-++|+|| |.||++||..|.++|++|++|++.
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~ 192 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSR 192 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCC
Confidence 3689999 599999999999999999999754
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=67.25 Aligned_cols=110 Identities=19% Similarity=0.119 Sum_probs=77.2
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.+|+.+|..+..-|.+|..||+.....+
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~----------------------------------------- 182 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN----------------------------------------- 182 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc-----------------------------------------
Confidence 34789999 99999999999999999999998632100
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.+ +. ..++++.++.||+|+.++|-..+-+.-+=++..+.++++++++
T Consensus 183 -----------------~~--------------~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI- 229 (311)
T PRK08410 183 -----------------EE--------------YE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILI- 229 (311)
T ss_pred -----------------cC--------------ce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-
Confidence 00 11 2478888999999999999877644333355666789999987
Q ss_pred cCC-C--CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 170 STS-S--FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 170 ~tS-t--~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
|++ + +.-+.+.+.+.. +.. .+...+.
T Consensus 230 N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~ 259 (311)
T PRK08410 230 NVGRGGIVNEKDLAKALDEKDIY-AGLDVLE 259 (311)
T ss_pred ECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence 665 2 444566666653 334 5665554
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.4e-05 Score=67.77 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=33.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
-++|+|+ |.||+.+|..+...|++|++++|+++...+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~ 189 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLAR 189 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3689999 999999999999999999999999876544
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00021 Score=65.91 Aligned_cols=113 Identities=14% Similarity=0.011 Sum_probs=76.3
Q ss_pred CccceEEE--ccccHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.-++|+|| |.+|+.+|..+. .-|.+|..||+....-.. ..
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~--~~----------------------------------- 186 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE--ER----------------------------------- 186 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH--Hh-----------------------------------
Confidence 34789999 999999999987 789999999986422100 00
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.| ... .++++.+++||+|+.++|-+.+-+.-+=++....++++++++
T Consensus 187 ------------------~~--------------~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI 233 (323)
T PRK15409 187 ------------------FN--------------ARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI 233 (323)
T ss_pred ------------------cC--------------cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE
Confidence 01 122 478888999999999999887654333355667789999987
Q ss_pred ecCCC---CCHHHHHhhcCC-CCceeeeeec
Q psy13746 169 SSTSS---FLPSVLSEHSTH-RSQFIVAHPV 195 (294)
Q Consensus 169 s~tSt---~~~~~ia~~l~~-~~~~ig~h~~ 195 (294)
|++- +.-+.+.+.+.. +....+...|
T Consensus 234 -N~aRG~vVde~AL~~AL~~g~i~gAaLDVf 263 (323)
T PRK15409 234 -NAGRGPVVDENALIAALQKGEIHAAGLDVF 263 (323)
T ss_pred -ECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 6662 444466666653 2233344443
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00013 Score=66.79 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=33.7
Q ss_pred cceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~~~~~ 52 (294)
+||+|| |.+|+++|..++..| ++|.++|++++.++....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~ 43 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEAL 43 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHh
Confidence 379999 999999999999999 689999999988665443
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=69.38 Aligned_cols=100 Identities=23% Similarity=0.237 Sum_probs=72.7
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|||| |.+|+.+|..+...|.+|..||+.+....
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~----------------------------------------- 188 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL----------------------------------------- 188 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccccc-----------------------------------------
Confidence 34689999 99999999999999999999998632100
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+ ......++++.++.||+|+.++|-..+-+.-+=++....++++++++
T Consensus 189 ------------------~-------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI- 236 (409)
T PRK11790 189 ------------------G-------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILI- 236 (409)
T ss_pred ------------------C-------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-
Confidence 0 01234578899999999999999877644333355667789999987
Q ss_pred cCCC---CCHHHHHhhcC
Q psy13746 170 STSS---FLPSVLSEHST 184 (294)
Q Consensus 170 ~tSt---~~~~~ia~~l~ 184 (294)
|++. +.-+.+.+.+.
T Consensus 237 N~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 237 NASRGTVVDIDALADALK 254 (409)
T ss_pred ECCCCcccCHHHHHHHHH
Confidence 6663 34445666554
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00034 Score=56.65 Aligned_cols=36 Identities=28% Similarity=0.521 Sum_probs=31.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
+||+|| |.+|+.+|..+...|. ++.++|++++.++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g 41 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEG 41 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCccccee
Confidence 489999 8999999999999875 89999999886553
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00031 Score=57.05 Aligned_cols=112 Identities=22% Similarity=0.211 Sum_probs=70.1
Q ss_pred eEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHH
Q psy13746 16 DGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENA 93 (294)
Q Consensus 16 i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 93 (294)
|+|+ |.||.-+|..|.++|++|+++++.+ .++...+. |+.+...+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~-----------------------g~~~~~~~--------- 47 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQ-----------------------GLTITGPD--------- 47 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHH-----------------------CEEEEETT---------
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhe-----------------------eEEEEecc---------
Confidence 6788 9999999999999999999999998 66543321 11111100
Q ss_pred HHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCC
Q psy13746 94 KNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS 173 (294)
Q Consensus 94 ~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt 173 (294)
| +..........+..+....+|+||.|+.... -..++..+.+++++++.|++.--+
T Consensus 48 --------------~--------~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 48 --------------G--------DETVQPPIVISAPSADAGPYDLVIVAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp --------------E--------EEEEEEEEEESSHGHHHSTESEEEE-SSGGG--HHHHHHHHCTGEETTEEEEEESSS
T ss_pred --------------c--------ceecccccccCcchhccCCCcEEEEEecccc--hHHHHHHHhhccCCCcEEEEEeCC
Confidence 0 0000011112223224689999999997654 346888899999998766655555
Q ss_pred CCH-HHHHhhcC
Q psy13746 174 FLP-SVLSEHST 184 (294)
Q Consensus 174 ~~~-~~ia~~l~ 184 (294)
+.. +.+++.++
T Consensus 104 ~g~~~~l~~~~~ 115 (151)
T PF02558_consen 104 MGNEEVLAEYFP 115 (151)
T ss_dssp SSHHHHHHCHST
T ss_pred CCcHHHHHHHcC
Confidence 553 35555553
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00044 Score=63.50 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=75.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.+|+.+|..+..-|.+|+.||+.... . ..
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-----~-~~----------------------------------- 185 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-----V-CR----------------------------------- 185 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc-----c-cc-----------------------------------
Confidence 3689999 999999999999999999999975321 0 00
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
. ...++++.++.||+|+.++|-..+-+.-+=++....++++++++ |
T Consensus 186 --------------------------------~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N 231 (314)
T PRK06932 186 --------------------------------E-GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLI-N 231 (314)
T ss_pred --------------------------------c-ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-E
Confidence 0 02468888999999999999876643333355666789999987 6
Q ss_pred CCC---CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TSS---FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tSt---~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
++- +.-+.+.+.+. ......+...|.
T Consensus 232 ~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~ 261 (314)
T PRK06932 232 TGRGPLVDEQALLDALENGKIAGAALDVLV 261 (314)
T ss_pred CCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence 652 44556666665 233334455443
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0003 Score=64.64 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=32.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
+||+|| |.+|..+|..++..|. ++.++|++++.++.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g 46 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEG 46 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHH
Confidence 699999 9999999999999887 89999999887654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0003 Score=64.05 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=33.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
-++|.|+ |.+|+.++..+...|.+|+++|+++++.+.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~ 190 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLAR 190 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 3689999 999999999999999999999999876544
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00037 Score=64.10 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=75.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.+|+.+|..+...|.+|..||+.... . .
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~----~------------------------------------- 185 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A----R------------------------------------- 185 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c----c-------------------------------------
Confidence 3689999 999999999999999999999986311 0 0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.. ..++++.++.||+|+.++|-+.+-+.-+=++....++++++++ |
T Consensus 186 --------------------------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N 231 (317)
T PRK06487 186 --------------------------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLI-N 231 (317)
T ss_pred --------------------------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-E
Confidence 00 1367888999999999999877654333355666789999987 6
Q ss_pred CC-C--CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TS-S--FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tS-t--~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
++ + +.-+.+.+.+. .+....+...|.
T Consensus 232 ~aRG~vVde~AL~~AL~~g~i~gAaLDVf~ 261 (317)
T PRK06487 232 TARGGLVDEQALADALRSGHLGGAATDVLS 261 (317)
T ss_pred CCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence 66 2 44446666665 233334454443
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0001 Score=69.27 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=72.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..+...|++|.+||+.....+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~------------------------------------------- 153 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE------------------------------------------- 153 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc-------------------------------------------
Confidence 689999 99999999999999999999997532100
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH---HHHHHH-HHHhcccCCCeEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ---IKHQVY-RAIDIFMSSNTIL 167 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~---~k~~~~-~~l~~~~~~~~ii 167 (294)
+ .....++++.+++||+|+.++|-..+ -...++ ++....+++++++
T Consensus 154 ----------------~--------------~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gail 203 (381)
T PRK00257 154 ----------------G--------------DGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWL 203 (381)
T ss_pred ----------------c--------------CccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEE
Confidence 0 00124678888999999999997542 122333 3455668999998
Q ss_pred EecCCC---CCHHHHHhhcC-CCCceeeeeec
Q psy13746 168 SSSTSS---FLPSVLSEHST-HRSQFIVAHPV 195 (294)
Q Consensus 168 ~s~tSt---~~~~~ia~~l~-~~~~~ig~h~~ 195 (294)
+ |+|. +.-..+.+.+. .+....+...+
T Consensus 204 I-N~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 204 I-NASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred E-ECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 7 5653 33445555554 23333444444
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0023 Score=57.61 Aligned_cols=143 Identities=10% Similarity=0.098 Sum_probs=78.4
Q ss_pred eccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCC-HHHHHhhcCCCCceeeeeec------CC
Q psy13746 125 GTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL-PSVLSEHSTHRSQFIVAHPV------NP 197 (294)
Q Consensus 125 ~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~-~~~ia~~l~~~~~~ig~h~~------~p 197 (294)
.++++++ +.++|+||.|++... -..+++.+.+++.++++|++..-++. .+.+.+.++. .+++++-.. .|
T Consensus 50 ~~~~~~~-~~~~D~iiv~vKs~~--~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~p 125 (293)
T TIGR00745 50 AATSPEE-LPPADLVIITVKAYQ--TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEP 125 (293)
T ss_pred cccChhh-cCCCCEEEEeccchh--HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCC
Confidence 3455664 679999999998753 35678889998888887775544553 3345555432 234332221 12
Q ss_pred CC---CC-CeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc-----cHH------------------------H
Q psy13746 198 PY---FI-PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG-----FAL------------------------N 244 (294)
Q Consensus 198 ~~---~~-~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g-----~v~------------------------n 244 (294)
-. .+ ..+.+ +......+..+.+.++|+..|...... .|-.+ ++. -
T Consensus 126 g~v~~~~~~~~~i-G~~~~~~~~~~~l~~~l~~~~~~~~~~-~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~ 203 (293)
T TIGR00745 126 GVVHHAGLGATKI-GDYVGENEAVEALAELLNEAGIPAELH-GDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEAR 203 (293)
T ss_pred cEEEEeccccEEE-ecCCCchHHHHHHHHHHHhCCCCCEec-chHHHHHHHHHhheechhHHHHHHCCccceeccChhHH
Confidence 10 00 11112 221112245666777777777655443 23211 111 1
Q ss_pred HHHHHHHHHHHHHHHcCCCC--HHHHHHHHH
Q psy13746 245 RIQFAVLNECYHLVHDGVLS--AKDIDRVMS 273 (294)
Q Consensus 245 ri~~a~~~Ea~~l~~~~~~~--~~~id~a~~ 273 (294)
+++..++.|...+++..|++ .+.+.+.+.
T Consensus 204 ~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~ 234 (293)
T TIGR00745 204 ELLRRLMDEVVRVARAEGVDLPDDEVEELVR 234 (293)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 23345688999999988765 333444443
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00027 Score=65.10 Aligned_cols=112 Identities=24% Similarity=0.137 Sum_probs=79.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-+++||| |.+|+++|+.+..-|.+|..||+++. .+ .++.
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~-~~~~------------------------------------- 186 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PE-AEKE------------------------------------- 186 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hH-HHhh-------------------------------------
Confidence 4789999 99999999999988899999999985 22 1110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+ ..+..+ +.+.++.+|+|+...|-..+-..-+=++..+.++++.+|+ |
T Consensus 187 -----------------~-------------~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-N 234 (324)
T COG1052 187 -----------------L-------------GARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILV-N 234 (324)
T ss_pred -----------------c-------------Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-E
Confidence 0 013344 8889999999999999987754444456677799999986 7
Q ss_pred CCC---CCHHHHHhhcC-CCCceeeeeec
Q psy13746 171 TSS---FLPSVLSEHST-HRSQFIVAHPV 195 (294)
Q Consensus 171 tSt---~~~~~ia~~l~-~~~~~ig~h~~ 195 (294)
++- +.-..+.+.+. ....-.|...|
T Consensus 235 taRG~~VDe~ALi~AL~~g~i~gaglDV~ 263 (324)
T COG1052 235 TARGGLVDEQALIDALKSGKIAGAGLDVF 263 (324)
T ss_pred CCCccccCHHHHHHHHHhCCcceEEeeec
Confidence 773 44445666664 23344455444
|
|
| >KOG3124|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00061 Score=59.76 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=79.9
Q ss_pred ccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEE
Q psy13746 126 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 205 (294)
Q Consensus 126 ~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lve 205 (294)
.++ .+.++.+|+++.|+-... ...++.++...+..+.||+|..-+.+++.++..+..+.|++...|..|...+....
T Consensus 53 ~~n-~~~~~~s~v~~~svKp~~--i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~s 129 (267)
T KOG3124|consen 53 FTN-LEVLQASDVVFLSVKPQV--IESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGAS 129 (267)
T ss_pred ech-HHHHhhccceeEeecchh--HHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcE
Confidence 344 557889999999986543 44666666665666778988888999999988888778899999999987765555
Q ss_pred -EecCCCCCHHHHHHHHHHHHHcCCe
Q psy13746 206 -IVPAAWTSERVITRTREIMTEIGMK 230 (294)
Q Consensus 206 -iv~g~~t~~e~~~~~~~ll~~lG~~ 230 (294)
+..+.....+..+.+++++..+|.-
T Consensus 130 v~~~g~~~~~~D~~l~~~ll~~vG~~ 155 (267)
T KOG3124|consen 130 VYAIGCHATNEDLELVEELLSAVGLC 155 (267)
T ss_pred EEeeCCCcchhhHHHHHHHHHhcCcc
Confidence 5566677788889999999999964
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00016 Score=65.60 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=27.0
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
-++|+|| |.||++||..|.++|++|++|+
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 4789999 8999999999999999999995
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00032 Score=67.16 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=29.8
Q ss_pred cceEEE--ccccHHHHH--HHH----HCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAM--IFA----SAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~--~~~----~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+||+|| |.||...+. .++ ..|.+|+++|+++++++.+...
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l 49 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV 49 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH
Confidence 589999 888866555 333 2467999999999998765443
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00047 Score=62.01 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCccceEEE--ccccHHHHHHHHHC--CCeEE-EEeCChHHHHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASA--GYKVS-LYDVLSEQIENA 50 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~--G~~V~-~~d~~~~~~~~~ 50 (294)
|...+|+|| |.||+.++..+... |+++. +||+++++.+..
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~ 48 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADF 48 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHH
Confidence 556799999 99999999999873 78876 899998876543
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00051 Score=62.96 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=31.6
Q ss_pred cceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~ 48 (294)
+||+|| |.+|.++|..++..| .+|.++|++++.++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~ 39 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAE 39 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhh
Confidence 379999 999999999999999 58999999988765
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00016 Score=67.87 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=71.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|||| |.||+.+|..+...|.+|.+||+.... .
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~----------------------------------------- 152 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R----------------------------------------- 152 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c-----------------------------------------
Confidence 3689999 999999999999999999999964211 0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH---HHHHHH-HHHhcccCCCeE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ---IKHQVY-RAIDIFMSSNTI 166 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~---~k~~~~-~~l~~~~~~~~i 166 (294)
+ . .....++++.+++||+|+.++|-..+ -...++ ++....++++++
T Consensus 153 -----------------~--~-----------~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gai 202 (378)
T PRK15438 153 -----------------G--D-----------EGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAI 202 (378)
T ss_pred -----------------c--c-----------ccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcE
Confidence 0 0 00124788888999999999986542 011233 445566889999
Q ss_pred EEecCCC---CCHHHHHhhcC-CCCceeeeeec
Q psy13746 167 LSSSTSS---FLPSVLSEHST-HRSQFIVAHPV 195 (294)
Q Consensus 167 i~s~tSt---~~~~~ia~~l~-~~~~~ig~h~~ 195 (294)
++ |+|- +.-+.+.+.+. .+....+...+
T Consensus 203 lI-N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~ 234 (378)
T PRK15438 203 LI-NACRGAVVDNTALLTCLNEGQKLSVVLDVW 234 (378)
T ss_pred EE-ECCCchhcCHHHHHHHHHhCCCcEEEEecC
Confidence 87 6662 34445655554 23333444444
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0032 Score=57.69 Aligned_cols=200 Identities=16% Similarity=0.114 Sum_probs=113.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||.|+ |.||+-+|..|+++|+.|+++.|++. +++.++. |+.+.-.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~-----------------------GL~i~~~~------- 49 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKK-----------------------GLRIEDEG------- 49 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhC-----------------------CeEEecCC-------
Confidence 589999 99999999999999999999999886 5544331 11110000
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
+ .... ...+.+..+....+|+||.++-.-. ..+++..+.+.++++++|.+.-
T Consensus 50 ----------------~---------~~~~-~~~~~~~~~~~~~~Dlviv~vKa~q--~~~al~~l~~~~~~~t~vl~lq 101 (307)
T COG1893 50 ----------------G---------NFTT-PVVAATDAEALGPADLVIVTVKAYQ--LEEALPSLAPLLGPNTVVLFLQ 101 (307)
T ss_pred ----------------C---------cccc-ccccccChhhcCCCCEEEEEecccc--HHHHHHHhhhcCCCCcEEEEEe
Confidence 0 0000 1112222335679999999986533 3578899999999998766444
Q ss_pred CCCC-HHHHHhhcCCCCceeeeeecCCCCC--------C-CeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc--
Q psy13746 172 SSFL-PSVLSEHSTHRSQFIVAHPVNPPYF--------I-PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR-- 239 (294)
Q Consensus 172 St~~-~~~ia~~l~~~~~~ig~h~~~p~~~--------~-~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~-- 239 (294)
=++. .+.+....++..-+.|.-+...... + .-+.+-.-....++.++.+.+.|+.-|....+. ++--
T Consensus 102 NG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~-~di~~~ 180 (307)
T COG1893 102 NGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELH-PDILAA 180 (307)
T ss_pred CCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEc-HHHHHH
Confidence 4443 2345444432212333333322111 1 111122222224467788888887777766554 3321
Q ss_pred ---ccHHH------------------------HHHHHHHHHHHHHHHcCC--CCHHHHHHHHH
Q psy13746 240 ---GFALN------------------------RIQFAVLNECYHLVHDGV--LSAKDIDRVMS 273 (294)
Q Consensus 240 ---g~v~n------------------------ri~~a~~~Ea~~l~~~~~--~~~~~id~a~~ 273 (294)
.++.| .++...+.|....+...+ .+.+.++..+.
T Consensus 181 ~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~~~~~~v~~ 243 (307)
T COG1893 181 IWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPEEVVERVLA 243 (307)
T ss_pred HHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 11222 122346788888888887 34444455443
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00055 Score=61.38 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=30.3
Q ss_pred cceEEE--ccccHHHHHHHHHC--CCe-EEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASA--GYK-VSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~--G~~-V~~~d~~~~~~~~~ 50 (294)
+||+|| |.||+.++..+.+. +++ +.++|+++++.+.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~ 43 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENL 43 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHH
Confidence 589999 99999999999876 455 66899998876543
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00069 Score=63.92 Aligned_cols=129 Identities=18% Similarity=0.147 Sum_probs=78.4
Q ss_pred CccceEEE--ccccHHHHHHHH-HCCCeEEEEeCChHH-HHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFA-SAGYKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~-~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.-++|+|| |.+|+.+|..+. .-|.+|+.||+.+.. .....+...
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~-------------------------------- 211 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG-------------------------------- 211 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc--------------------------------
Confidence 34789999 999999999986 679999999998642 111000000
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
..+ ...+... .......++++.++.||+|+.++|-+.+-+.-+=++..+.+++++++
T Consensus 212 -----------~~l---~~~~~~~---------~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~l 268 (386)
T PLN02306 212 -----------QFL---KANGEQP---------VTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVL 268 (386)
T ss_pred -----------ccc---ccccccc---------ccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEE
Confidence 000 0000000 01122458899999999999999987665433335666778999998
Q ss_pred EecCCC---CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 168 SSSTSS---FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 168 ~s~tSt---~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
+ |++- +.-..+.+.+.. +....++..|.
T Consensus 269 I-N~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~ 300 (386)
T PLN02306 269 V-NASRGPVIDEVALVEHLKANPMFRVGLDVFE 300 (386)
T ss_pred E-ECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence 7 6662 344456666642 23334444443
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00048 Score=63.25 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=63.9
Q ss_pred CccceEEE--ccccHHHHHHHHH-C-CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-A-GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++|+|| |.||+.++..++. . +.+|++|+|++++.++..+.+.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~-------------------------------- 171 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELR-------------------------------- 171 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH--------------------------------
Confidence 45789999 9999999986654 4 4789999999998776654322
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+.|. .+....+..+++++||+|+.|.+... .++.. +.+++++.|
T Consensus 172 ------------------~~g~------------~~~~~~~~~~av~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i 215 (314)
T PRK06141 172 ------------------AQGF------------DAEVVTDLEAAVRQADIISCATLSTE----PLVRG--EWLKPGTHL 215 (314)
T ss_pred ------------------hcCC------------ceEEeCCHHHHHhcCCEEEEeeCCCC----CEecH--HHcCCCCEE
Confidence 0110 13445778888999999999888652 22221 356788876
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
...++
T Consensus 216 ~~ig~ 220 (314)
T PRK06141 216 DLVGN 220 (314)
T ss_pred EeeCC
Confidence 54443
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0023 Score=54.89 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=35.1
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
+.-++|+|+ |.||+.+|+.|.+.|++|+++|+++++++...
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~ 68 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAA 68 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 334689999 99999999999999999999999987766543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00077 Score=61.53 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=30.4
Q ss_pred eEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHHHH
Q psy13746 16 DGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIENA 50 (294)
Q Consensus 16 i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~~~ 50 (294)
|+|| |.+|+++|..++..| .+++++|++++.++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~ 39 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGD 39 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHH
Confidence 5788 999999999999988 6899999998876543
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.001 Score=61.07 Aligned_cols=35 Identities=23% Similarity=0.465 Sum_probs=30.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
.||+|| |.+|+++|..++..|. ++.++|++++.++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~ 42 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLK 42 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHH
Confidence 499999 9999999999998875 7999999987654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00036 Score=62.82 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=25.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEE
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLY 40 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~ 40 (294)
++|+|| |.||++||..|.++|+.|++|
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~ 188 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLT 188 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEE
Confidence 689999 899999999999999999999
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0013 Score=58.27 Aligned_cols=113 Identities=11% Similarity=0.090 Sum_probs=80.3
Q ss_pred CeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcCC-CCceeeeeecCCCC-
Q psy13746 122 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH-RSQFIVAHPVNPPY- 199 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~~-~~~~ig~h~~~p~~- 199 (294)
.+++++|-.+|++++|++|.=+|---. -..+.+++.+++++++||+ ++.|+++..+...+.. ..+-+|...|.|..
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaV 205 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAV 205 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence 355666666699999999999987531 1367889999999999986 7888887766655542 23456666666542
Q ss_pred ---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 200 ---FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 200 ---~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
.++.. + .-.-.++|+++++.++.+..|+.++.++.+-
T Consensus 206 Pgt~Gq~~-i-~egyAtEEqI~klveL~~sa~k~ay~~PA~l 245 (342)
T PRK00961 206 PEMKGQVY-I-AEGYADEEAVEKLYEIGKKARGNAFKMPANL 245 (342)
T ss_pred CCCCCcee-c-ccccCCHHHHHHHHHHHHHhCCCeeecchhh
Confidence 12221 2 2234688999999999999999999986553
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.002 Score=57.25 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=80.0
Q ss_pred CeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcCC-CCceeeeeecCCCC-
Q psy13746 122 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH-RSQFIVAHPVNPPY- 199 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~~-~~~~ig~h~~~p~~- 199 (294)
.+++++|-.+|++++|++|.=+|---. -..+.+++.+++++++||+ ++.|+++..+...+.. ..+-+|...|.|..
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaV 203 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGCV 203 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCCC
Confidence 355666666799999999999987531 1367889999999999986 7888887755554431 22456665665531
Q ss_pred --CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 200 --FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 200 --~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
.-.-+-++.+ -.++|.++++.++.+..|+.++.++.+-
T Consensus 204 Pgt~~q~Yi~eg-yAtEEqI~klveL~~sa~k~ay~~PA~L 243 (340)
T TIGR01723 204 PEMKGQVYIAEG-YASEEAVNKLYELGKKARGKAFKMPANL 243 (340)
T ss_pred CCCCCceEeecc-cCCHHHHHHHHHHHHHhCCCeeecchhh
Confidence 1122223444 4688999999999999999999986443
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0031 Score=50.44 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=65.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|.+| | -|..+|..|++.|++|+..|++++.++.+++.. ..+...|
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~-----------------------~~~v~dD------- 66 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG-----------------------LNAFVDD------- 66 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC-----------------------CeEEECc-------
Confidence 578888 8 888899999999999999999999888765431 1111111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
+ +..+++ .-+++|+|..+-|.. + .+.-+.++.+.+..+.+|..-+
T Consensus 67 -------------------------------l-f~p~~~-~y~~a~liysirpp~-e-l~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 67 -------------------------------L-FNPNLE-IYKNAKLIYSIRPPR-D-LQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred -------------------------------C-CCCCHH-HHhcCCEEEEeCCCH-H-HHHHHHHHHHHcCCCEEEEcCC
Confidence 1 233454 468999999988864 3 3455667888888888886443
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00065 Score=63.75 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=36.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~ 53 (294)
+++|.|| |.+|+.+|..|++.| ++|++.||++++++++.+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence 3688899 999999999999999 8999999999999887654
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00068 Score=54.40 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=35.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCe-EEEEeCChHHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYK-VSLYDVLSEQIENAKNT 53 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~-V~~~d~~~~~~~~~~~~ 53 (294)
-+++.|| |-+|++++..|+..|.+ |++++|+.++.++..+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~ 55 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEE 55 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHH
Confidence 3689999 99999999999999986 99999999987766543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0013 Score=60.40 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=33.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAK 51 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~ 51 (294)
-++|+|+ |.||+.++..+...| .+|+++|+++++.....
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la 219 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELA 219 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 3689999 999999999999866 68999999998765543
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0022 Score=59.76 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=31.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
+||+|| |.+|+.+|..++..|. ++.++|++++.++-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g 77 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRG 77 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhH
Confidence 599999 9999999999998875 79999999876543
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0022 Score=58.70 Aligned_cols=113 Identities=13% Similarity=0.149 Sum_probs=70.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|+ |.||+-+|..|+++|++|++++|.++.++...+. .|+.+. +
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~----------------------~Gl~i~--~------- 51 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA----------------------GGLTLV--E------- 51 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc----------------------CCeEEe--e-------
Confidence 589999 9999999999999999999999987666544321 011100 0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.| . ...-+... .+.+ ....+|+||.|+-... -.+.++++.+.+.++++|++.-
T Consensus 52 ---------------~g----~----~~~~~~~~-~~~~-~~~~~D~viv~vK~~~--~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 52 ---------------QG----Q----ASLYAIPA-ETAD-AAEPIHRLLLACKAYD--AEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred ---------------CC----c----ceeeccCC-CCcc-cccccCEEEEECCHHh--HHHHHHHHHhhCCCCCEEEEEe
Confidence 00 0 00000111 1112 2468999999986543 2367788999998888776544
Q ss_pred CCCCH-HHHHhhcC
Q psy13746 172 SSFLP-SVLSEHST 184 (294)
Q Consensus 172 St~~~-~~ia~~l~ 184 (294)
=++.. +.+++.+.
T Consensus 105 NGv~~~e~l~~~~~ 118 (305)
T PRK05708 105 NGLGSQDAVAARVP 118 (305)
T ss_pred CCCCCHHHHHHhCC
Confidence 45543 45555554
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0015 Score=59.82 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=27.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~ 44 (294)
+||+|+ |.+|..+|..++..|+ +|+++|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 478999 8999999999999987 599999964
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0029 Score=60.12 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=33.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++|+|+ |.+|+.+|..+...|.+|+++|+++.+++.+.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA 242 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH
Confidence 578888 99999999999999999999999998876553
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0016 Score=62.61 Aligned_cols=36 Identities=14% Similarity=0.048 Sum_probs=32.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIE 48 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~ 48 (294)
-++|+|+ |.+|+.+|..+...|.+|+++|+++....
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~ 291 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICAL 291 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHH
Confidence 3688999 99999999999999999999999987643
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0018 Score=59.72 Aligned_cols=94 Identities=16% Similarity=0.085 Sum_probs=65.7
Q ss_pred CCccceEEE--ccccHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFAS--AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~--~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
...++++|| |.||+..+..++. ...+|.+||+++++.+...+.+.
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~------------------------------- 174 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS------------------------------- 174 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------------------------------
Confidence 345789999 9999997666654 45699999999999876554322
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
+.|. .+...++.++++++||+|+.|+|... .++. .+++++++.
T Consensus 175 -------------------~~g~------------~v~~~~~~~eav~~aDiVitaT~s~~----P~~~--~~~l~~g~~ 217 (325)
T TIGR02371 175 -------------------DYEV------------PVRAATDPREAVEGCDILVTTTPSRK----PVVK--ADWVSEGTH 217 (325)
T ss_pred -------------------hhCC------------cEEEeCCHHHHhccCCEEEEecCCCC----cEec--HHHcCCCCE
Confidence 0110 13456788899999999999998753 2331 234688888
Q ss_pred EEecCC
Q psy13746 167 LSSSTS 172 (294)
Q Consensus 167 i~s~tS 172 (294)
|....|
T Consensus 218 v~~vGs 223 (325)
T TIGR02371 218 INAIGA 223 (325)
T ss_pred EEecCC
Confidence 765554
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0036 Score=60.09 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=32.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
++|+|+ |.+|+.+|..+...|.+|+++|+++.+...
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~e 292 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQ 292 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHH
Confidence 678888 999999999999999999999999876443
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0016 Score=62.03 Aligned_cols=145 Identities=16% Similarity=0.191 Sum_probs=90.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCC------hHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeec
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVL------SEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDV 85 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 85 (294)
++|+|| |.+|+.-|..+...|++|++--|. ...-+++.+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~--------------------------------- 83 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE--------------------------------- 83 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh---------------------------------
Confidence 789999 999999999999999999944433 333322211
Q ss_pred chHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCe
Q psy13746 86 LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNT 165 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ 165 (294)
.| +.+ .++.++++.||+|+..+|+.. ...+++++.+.++++.
T Consensus 84 ---------------------dG--------------F~v-~~~~Ea~~~ADvVviLlPDt~--q~~v~~~i~p~LK~Ga 125 (487)
T PRK05225 84 ---------------------NG--------------FKV-GTYEELIPQADLVINLTPDKQ--HSDVVRAVQPLMKQGA 125 (487)
T ss_pred ---------------------cC--------------Ccc-CCHHHHHHhCCEEEEcCChHH--HHHHHHHHHhhCCCCC
Confidence 12 222 468889999999999999873 6677899999999999
Q ss_pred EEEecCCCCCHHHHHhhcCCCCceeeeeecCCCC----------CCC-eEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy13746 166 ILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY----------FIP-LVEIVPAAWTSERVITRTREIMTEIGMK 230 (294)
Q Consensus 166 ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~----------~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~ 230 (294)
.+.. +-+..+..-....+.-..++-+-|-.|-. ..+ ++-+-.-...+....+.+..+...+|..
T Consensus 126 ~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 126 ALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred EEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchHHHHHHHHHHHhCCC
Confidence 8864 33443321110111111222222322211 011 3333321234556788899999999976
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0021 Score=60.94 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=32.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIE 48 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~ 48 (294)
-++|+|+ |.+|+.+|+.+...|.+|+++|+++.+..
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~ 232 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRAL 232 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHH
Confidence 3688899 99999999999999999999999997643
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0023 Score=61.02 Aligned_cols=37 Identities=16% Similarity=0.029 Sum_probs=32.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
-++|+|+ |.+|+.+|..+...|.+|+++|+++.+...
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~ 250 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQ 250 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHH
Confidence 3678888 999999999999999999999999877543
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0034 Score=53.38 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=34.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|+ |.+|+.++..|+..|++|++++|++++++...+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~ 71 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADS 71 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 578888 7899999999999999999999998877665543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0048 Score=53.95 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=33.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
+++.|+ |.+|+++|..|.+.||+|+++|++++.+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~ 38 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEE 38 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHH
Confidence 468888 999999999999999999999999999876
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.003 Score=52.98 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=27.6
Q ss_pred ceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
+|.|+ |.||+.+|..|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 57888 9999999999999998 599999986
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0016 Score=58.48 Aligned_cols=39 Identities=21% Similarity=0.108 Sum_probs=33.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+++.|+ |.+|++++..++..|++|++++|++++.+...+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 578888 999999999999999999999999887765543
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.005 Score=56.82 Aligned_cols=93 Identities=15% Similarity=0.045 Sum_probs=65.0
Q ss_pred CccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |.+|+..+..++. .+ .+|.+|+|++++.++..+.+..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~------------------------------- 174 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQS------------------------------- 174 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHH-------------------------------
Confidence 34689999 9999988877764 45 4899999999987765544320
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
. .| -.+...++++++++++|+||.|+|... .++. +.+++++.|
T Consensus 175 ------------~------~~------------~~~~~~~~~~~~~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV 217 (325)
T PRK08618 175 ------------K------FN------------TEIYVVNSADEAIEEADIIVTVTNAKT----PVFS---EKLKKGVHI 217 (325)
T ss_pred ------------h------cC------------CcEEEeCCHHHHHhcCCEEEEccCCCC----cchH---HhcCCCcEE
Confidence 0 01 012345778888999999999999753 3333 456888887
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 218 ~~iGs 222 (325)
T PRK08618 218 NAVGS 222 (325)
T ss_pred EecCC
Confidence 65555
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.01 Score=59.40 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=66.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|.|+ |.+|+.+|+.|.+.|++++++|.|+++++.+++ .|++|+.-|..+...
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------------------~g~~v~~GDat~~~~- 456 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------------------YGYKVYYGDATQLEL- 456 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------------------CCCeEEEeeCCCHHH-
Confidence 577777 999999999999999999999999999887654 267777777555331
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhh-hccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE-CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~-a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+++ -+.+||.+|.+++++.+- ..+...+.+..+.-.|++-
T Consensus 457 -------------------------------------L~~agi~~A~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 457 -------------------------------------LRAAGAEKAEAIVITCNEPEDT-MKIVELCQQHFPHLHILAR 497 (601)
T ss_pred -------------------------------------HHhcCCccCCEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEE
Confidence 111 157899999999886532 2333444444455566653
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0027 Score=57.48 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=35.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~ 53 (294)
++|.|+ |.+|++++..++..|. +|+++||++++.+...+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~ 170 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADE 170 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence 689999 9999999999999997 799999999887765543
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0053 Score=56.13 Aligned_cols=91 Identities=11% Similarity=-0.017 Sum_probs=64.6
Q ss_pred CccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |.+|+..+..++. .+ .+|.+|+|++++.++..+++.
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~-------------------------------- 171 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR-------------------------------- 171 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH--------------------------------
Confidence 34689999 9999999999875 56 479999999998776654332
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+.+. .+. .++.+++++++|+||.|+|... .++.. .+++++.|
T Consensus 172 ------------------~~~~------------~~~-~~~~~~av~~aDiVitaT~s~~----Pl~~~---~~~~g~hi 213 (304)
T PRK07340 172 ------------------ALGP------------TAE-PLDGEAIPEAVDLVVTATTSRT----PVYPE---AARAGRLV 213 (304)
T ss_pred ------------------hcCC------------eeE-ECCHHHHhhcCCEEEEccCCCC----ceeCc---cCCCCCEE
Confidence 0010 012 3677788999999999998754 34432 36788877
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 214 ~~iGs 218 (304)
T PRK07340 214 VAVGA 218 (304)
T ss_pred EecCC
Confidence 65554
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0062 Score=50.67 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=30.7
Q ss_pred eEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 16 DGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 16 i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
|.|+ |.+|+.++..|++.|++|+++-|++++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 5667 999999999999999999999999987664
|
... |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0034 Score=59.94 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=32.6
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~ 50 (294)
++|+|+ |.||..++..|...| .+|+++++++++....
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~l 220 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDL 220 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 689999 999999999999999 7899999998776543
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.02 Score=51.67 Aligned_cols=139 Identities=19% Similarity=0.161 Sum_probs=90.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH-HHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.-|.+-|.+++.+|.+|++--|.... .+++++
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~-------------------------------------- 60 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKE-------------------------------------- 60 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHh--------------------------------------
Confidence 689999 999999999999999999887765443 332221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH-HHhcccCCCeEEEe
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR-AIDIFMSSNTILSS 169 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~-~l~~~~~~~~ii~s 169 (294)
.| +. .-++++|++.+|+|+.-+|+..+ .++++ +|.+.++++..+..
T Consensus 61 ----------------dG--------------f~-V~~v~ea~k~ADvim~L~PDe~q--~~vy~~~I~p~Lk~G~aL~F 107 (338)
T COG0059 61 ----------------DG--------------FK-VYTVEEAAKRADVVMILLPDEQQ--KEVYEKEIAPNLKEGAALGF 107 (338)
T ss_pred ----------------cC--------------CE-eecHHHHhhcCCEEEEeCchhhH--HHHHHHHhhhhhcCCceEEe
Confidence 22 22 35678899999999999998763 46776 89999999988763
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCC---C-------CC---C-eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPP---Y-------FI---P-LVEIVPAAWTSERVITRTREIMTEIGM 229 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~---~-------~~---~-lveiv~g~~t~~e~~~~~~~ll~~lG~ 229 (294)
+.+..+-. ... .|...+..-...|- + .+ + ++-+-. ..+....+.+..+.+.+|.
T Consensus 108 -aHGfNihf--~~i-~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~q--D~sG~a~~~Ala~AkgiGg 175 (338)
T COG0059 108 -AHGFNIHF--GLI-VPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQ--DASGKALDIALAYAKGIGG 175 (338)
T ss_pred -ccccceec--cee-cCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEe--CCCchHHHHHHHHHHhcCC
Confidence 44544321 111 22222332222331 1 01 2 222222 2345678888899999995
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0022 Score=60.35 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=33.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
.+|.|+ |.+|...+..+...|.+|+++|+++++++.+.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLD 207 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Confidence 568888 99999999999999999999999998876543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0022 Score=57.87 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=33.9
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~ 52 (294)
+++.|+ |.+|++++..|+..| .+|++++|++++.+...+
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~ 165 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK 165 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 578888 999999999999999 699999999988766544
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.012 Score=54.29 Aligned_cols=114 Identities=18% Similarity=0.086 Sum_probs=77.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|+ |.+|+.+|+.|...|..+.-+.|++...+...++
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~------------------------------------- 204 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEY------------------------------------- 204 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHh-------------------------------------
Confidence 3789999 9999999999999995566666665544433221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+ .-..|..+.++.+|+|+.|.|-+.+...-+=+++...++++.+|+ |
T Consensus 205 -----------------~---------------~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlV-N 251 (336)
T KOG0069|consen 205 -----------------Y---------------AEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLV-N 251 (336)
T ss_pred -----------------c---------------ccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEE-e
Confidence 0 003466778999999999999988776656678888999999997 5
Q ss_pred CC-C--CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TS-S--FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tS-t--~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
++ + +.-+.+.+.+. .+..-.|...+.
T Consensus 252 ~aRG~iide~~l~eaL~sG~i~~aGlDVf~ 281 (336)
T KOG0069|consen 252 TARGAIIDEEALVEALKSGKIAGAGLDVFE 281 (336)
T ss_pred ccccccccHHHHHHHHhcCCcccccccccC
Confidence 55 3 23334555553 222334555444
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0058 Score=58.52 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=32.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~ 50 (294)
++|+|+ |.||+.++..+...|. +|+++++++++....
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l 222 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEEL 222 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence 689999 9999999999999997 899999999876543
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0096 Score=54.38 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=28.7
Q ss_pred cceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~ 47 (294)
+||+|| |.+|++.|+.++..+ .++.++|++++..
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~ 38 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKA 38 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccc
Confidence 489999 999999999998765 4899999995543
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.009 Score=55.18 Aligned_cols=93 Identities=11% Similarity=0.084 Sum_probs=64.2
Q ss_pred ccceEEE--ccccHHHHHHHHH-CCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 13 FYPDGII--GLIGQAWAMIFAS-AGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~-~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.++++|| |.+|+..+..++. .+. +|++|+|++++.+...+++.+
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~-------------------------------- 176 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSS-------------------------------- 176 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh--------------------------------
Confidence 4689999 9999999999874 664 799999999988776554320
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
. .| -.+...+++++++++||+|+.|+|.... ++. .+.+++++.+.
T Consensus 177 -----------~------~g------------~~v~~~~~~~~av~~aDiVvtaT~s~~p----~i~--~~~l~~g~~i~ 221 (326)
T TIGR02992 177 -----------L------LG------------IDVTAATDPRAAMSGADIIVTTTPSETP----ILH--AEWLEPGQHVT 221 (326)
T ss_pred -----------h------cC------------ceEEEeCCHHHHhccCCEEEEecCCCCc----Eec--HHHcCCCcEEE
Confidence 0 01 0133457888889999999999987542 221 12367787765
Q ss_pred ecCC
Q psy13746 169 SSTS 172 (294)
Q Consensus 169 s~tS 172 (294)
...+
T Consensus 222 ~vg~ 225 (326)
T TIGR02992 222 AMGS 225 (326)
T ss_pred eeCC
Confidence 4443
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.013 Score=57.99 Aligned_cols=39 Identities=10% Similarity=0.257 Sum_probs=35.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.+|.|+ |.+|+.+|..|.+.|++|+++|.|+++++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~ 458 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE 458 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 577788 999999999999999999999999999887754
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.033 Score=42.86 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=32.2
Q ss_pred eEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 16 DGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 16 i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.|+ |.+|..++..|.+.+.+|+++|.+++..+++.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~ 39 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE 39 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh
Confidence 3466 999999999999977799999999999887654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=53.55 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=30.0
Q ss_pred ceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
||+|| |.+|+.+|..++..|. ++.++|++++.++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~ 38 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAE 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhh
Confidence 68999 9999999999998886 7999999887654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.027 Score=54.02 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=31.1
Q ss_pred cceEEE---ccccHHHHHHHHHC-------CC--eEEEEeCChHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASA-------GY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~-------G~--~V~~~d~~~~~~~~ 49 (294)
-||+|| |.+|..+|..++.. |. ++.++|++++.++-
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G 148 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEG 148 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHH
Confidence 479999 88999999999988 65 79999999988664
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.01 Score=54.55 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=58.7
Q ss_pred CccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |..|+.-+..++. .+ .+|.+|+|++++.++..+.+.+
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~------------------------------- 175 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD------------------------------- 175 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------------------------------
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------------------------------
Confidence 34689999 9999988887765 44 4899999999988876654430
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.| -.+...+|.++++++||+|+.|+|..... .++. .+++++++.|
T Consensus 176 -------------------~~------------~~v~~~~~~~~av~~aDii~taT~s~~~~--P~~~--~~~l~~g~hi 220 (313)
T PF02423_consen 176 -------------------LG------------VPVVAVDSAEEAVRGADIIVTATPSTTPA--PVFD--AEWLKPGTHI 220 (313)
T ss_dssp -------------------CC------------TCEEEESSHHHHHTTSSEEEE----SSEE--ESB---GGGS-TT-EE
T ss_pred -------------------cc------------ccceeccchhhhcccCCEEEEccCCCCCC--cccc--HHHcCCCcEE
Confidence 01 12456789999999999999999875400 1222 2357889888
Q ss_pred EecCCC
Q psy13746 168 SSSTSS 173 (294)
Q Consensus 168 ~s~tSt 173 (294)
....|.
T Consensus 221 ~~iGs~ 226 (313)
T PF02423_consen 221 NAIGSY 226 (313)
T ss_dssp EE-S-S
T ss_pred EEecCC
Confidence 755553
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.014 Score=50.60 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=28.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 578999 9999999999999998 599999983
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.036 Score=42.79 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=29.5
Q ss_pred ceEEE--ccccHHHHHHHHHC--CCeE-EEEeCChHHHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASA--GYKV-SLYDVLSEQIENAK 51 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~--G~~V-~~~d~~~~~~~~~~ 51 (294)
||+|| |.+|+.....+... +.++ .++|+++++.+...
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~ 43 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFA 43 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHH
Confidence 78999 89999998888876 4554 48999998877653
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.012 Score=52.59 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=39.1
Q ss_pred CCCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh
Q psy13746 10 QGGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 56 (294)
Q Consensus 10 ~~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~ 56 (294)
.|..+++.|- +-+|..+|..|++.|++|+++.|+.++++++.+.+.+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 3444444444 8899999999999999999999999999999888773
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.011 Score=54.59 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=28.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~ 44 (294)
.||+|+ |.+|+.+|..++..|. ++.++|+++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 589999 8999999999997765 899999987
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.013 Score=53.61 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=65.0
Q ss_pred CccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |..|+.-+..++. .. .+|.+|+|++++.++..+.+.+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~------------------------------- 164 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSK------------------------------- 164 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHH-------------------------------
Confidence 34789999 9999988887776 33 3899999999998876554321
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
. .| -.+...++.++++++||+|+.|++... .++. .++++|++.|
T Consensus 165 ------------~------~~------------~~v~~~~~~~eav~~aDIV~taT~s~~----P~~~--~~~l~pg~hV 208 (301)
T PRK06407 165 ------------E------FG------------VDIRPVDNAEAALRDADTITSITNSDT----PIFN--RKYLGDEYHV 208 (301)
T ss_pred ------------h------cC------------CcEEEeCCHHHHHhcCCEEEEecCCCC----cEec--HHHcCCCceE
Confidence 0 01 124556889999999999999988653 3331 1246677766
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 209 ~aiGs 213 (301)
T PRK06407 209 NLAGS 213 (301)
T ss_pred EecCC
Confidence 54444
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.018 Score=55.29 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=34.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|+.+|..|...|++|+++|++++.++.+.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 368888 999999999999999999999999998776543
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.01 Score=54.92 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=34.0
Q ss_pred ccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i 54 (294)
.++++|| |.+|+..+..++. .+ .+|.+|+|++++.+...+.+
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~ 177 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADL 177 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 4689999 9999998888875 45 58999999999988765543
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.017 Score=53.35 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=67.3
Q ss_pred CCccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
.....++|| |.++.-....+.. .+ -+|.+|+|+++..++......
T Consensus 128 ~da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~------------------------------- 176 (330)
T COG2423 128 KDASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLR------------------------------- 176 (330)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHH-------------------------------
Confidence 345789999 9999888887776 34 489999999999887654332
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
+.+. ..+...++.++++++||+|+.|+|.... ++. .+++++++-
T Consensus 177 -------------------~~~~-----------~~v~a~~s~~~av~~aDiIvt~T~s~~P----il~--~~~l~~G~h 220 (330)
T COG2423 177 -------------------KRGG-----------EAVGAADSAEEAVEGADIVVTATPSTEP----VLK--AEWLKPGTH 220 (330)
T ss_pred -------------------hhcC-----------ccceeccCHHHHhhcCCEEEEecCCCCC----eec--HhhcCCCcE
Confidence 1111 1245678889999999999999988653 221 235678888
Q ss_pred EEecCC
Q psy13746 167 LSSSTS 172 (294)
Q Consensus 167 i~s~tS 172 (294)
|....+
T Consensus 221 I~aiGa 226 (330)
T COG2423 221 INAIGA 226 (330)
T ss_pred EEecCC
Confidence 865544
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.031 Score=56.16 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=35.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|+.+|+.|.+.|+++++.|.|+++++.+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK 441 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 578778 999999999999999999999999999887753
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.043 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=20.5
Q ss_pred CeeeccChhhhccCCcEEEEcCCc
Q psy13746 122 LISGTPVLRECLEDAIFIQESVPE 145 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavpe 145 (294)
++..|+|.++|+++||+||.++-.
T Consensus 61 ~v~~ttD~~~Al~gADfVi~~irv 84 (425)
T cd05197 61 KFEKTMDLEDAIIDADFVINQFRV 84 (425)
T ss_pred EEEEeCCHHHHhCCCCEEEEeeec
Confidence 367889999999999999998644
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.022 Score=52.33 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=65.5
Q ss_pred CccceEEE--ccccHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |..++.-+..++.. -.+|.+|+|++++.+...+.+.
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------------------------------- 174 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------------------------------- 174 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH--------------------------------
Confidence 45789999 99999988877752 3489999999999886654322
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+.| -.+...++.++++++||+|+.|++... .+|. .+++++++.|
T Consensus 175 ------------------~~~------------~~v~~~~~~~~av~~ADIV~taT~s~~----P~~~--~~~l~~G~hi 218 (315)
T PRK06823 175 ------------------ALG------------FAVNTTLDAAEVAHAANLIVTTTPSRE----PLLQ--AEDIQPGTHI 218 (315)
T ss_pred ------------------hcC------------CcEEEECCHHHHhcCCCEEEEecCCCC----ceeC--HHHcCCCcEE
Confidence 011 014456788889999999999987643 3332 1356788877
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 219 ~~iGs 223 (315)
T PRK06823 219 TAVGA 223 (315)
T ss_pred EecCC
Confidence 65554
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.052 Score=51.24 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=27.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCC-------eEEEE--eCChHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY-------KVSLY--DVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~-------~V~~~--d~~~~~~~~ 49 (294)
-||+|| |.+|..+|..++..|. .+.++ |++++.++-
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g 92 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEG 92 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhH
Confidence 489999 8899999999998764 24445 777777553
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.013 Score=54.00 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=28.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCC-------eEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY-------KVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~~~ 45 (294)
.||+|| |.+|.++|..++..|. ++.++|++++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~ 44 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQA 44 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCc
Confidence 589999 8899999999998876 7999999653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.017 Score=50.07 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=29.8
Q ss_pred ceEEE--ccccHHHHHHHHHC--CC-eEEEEeCChHHHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASA--GY-KVSLYDVLSEQIENAK 51 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~--G~-~V~~~d~~~~~~~~~~ 51 (294)
+|++| |.+|..+...+..- .+ .|.+||++++++.++.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~ 43 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELE 43 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHH
Confidence 78999 99999999877653 24 5889999999877654
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0077 Score=51.18 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=30.5
Q ss_pred CCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 11 GGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 11 ~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
..-++|+|| ..+|+++|..|.+.|..|+++|++--
T Consensus 60 l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~ 97 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGI 97 (197)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcc
Confidence 344789999 89999999999999999999997753
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.054 Score=52.02 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=20.6
Q ss_pred CeeeccChhhhccCCcEEEEcCCc
Q psy13746 122 LISGTPVLRECLEDAIFIQESVPE 145 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavpe 145 (294)
++..|+|..+|+++||+||.++-.
T Consensus 61 ~v~~Ttdr~eAl~gADfVi~~irv 84 (437)
T cd05298 61 KFVYTTDPEEAFTDADFVFAQIRV 84 (437)
T ss_pred EEEEECCHHHHhCCCCEEEEEeee
Confidence 467889999999999999998644
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >KOG1683|consensus | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0013 Score=60.56 Aligned_cols=53 Identities=25% Similarity=0.266 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 242 ALNRIQFAVLNECYHLVHDGVL-SAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 242 v~nri~~a~~~Ea~~l~~~~~~-~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++++++.+++||++.++++|.+ ++.++|-+.-.|+|||....|||.|.|..|+
T Consensus 296 ~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~ 349 (380)
T KOG1683|consen 296 FVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGA 349 (380)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccCh
Confidence 6788899999999999999965 4888888877899999999999999999885
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.008 Score=58.89 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=34.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
-++|+|| |.||+.++.+|...|. +|++++|++++.+...+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~ 308 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE 308 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence 4689999 9999999999999997 79999999988766543
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.017 Score=45.61 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=26.3
Q ss_pred cceEEE---ccccHHHHHHHHH-CCCe-EEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFAS-AGYK-VSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~-~G~~-V~~~d~~~ 44 (294)
+||+|+ |.||+.++..+.+ .|++ |-.+|+++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 378899 9999999999998 7887 55788887
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.026 Score=52.04 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=27.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCC-------eEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY-------KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~~ 44 (294)
-||+|| |.+|+.+|..+...|. ++.++|+++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~ 44 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP 44 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC
Confidence 489999 9999999999998885 799999975
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.049 Score=51.99 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
|+.++|.|+ |.+|.++|..|.+.|++|+++|++++.+
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 566899999 9999999999999999999999887654
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.021 Score=52.75 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=27.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCC-------eEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY-------KVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~~~ 45 (294)
.||+|| |.+|+.+|..++..|. ++.++|++++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~ 46 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPA 46 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCc
Confidence 599999 9999999999988664 7999999653
|
|
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.017 Score=52.08 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=54.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
..+++| +-+|+.||..+++.|.++.+||++++..++..+.+++. .-...+.+|+++ +
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~------------------g~~~~y~cdis~~e 99 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI------------------GEAKAYTCDISDRE 99 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc------------------CceeEEEecCCCHH
Confidence 467777 67999999999999999999999999999888877620 014557788887 7
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+.+..++++++.
T Consensus 100 ei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 100 EIYRLAKKVKKEV 112 (300)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777666555
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.011 Score=52.60 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=26.7
Q ss_pred cceEEE---ccccHHHHHHHHH-CCCeEE-EEeCChHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFAS-AGYKVS-LYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~-~G~~V~-~~d~~~~~~ 47 (294)
.||+|+ |.||+.++..+.+ .++++. ++|++++..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~ 40 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL 40 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc
Confidence 589999 8899999988876 467755 688887653
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.019 Score=52.65 Aligned_cols=30 Identities=30% Similarity=0.603 Sum_probs=27.1
Q ss_pred ceEEE---ccccHHHHHHHHHCCC--eEEEEeCCh
Q psy13746 15 PDGII---GLIGQAWAMIFASAGY--KVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~ 44 (294)
||+|| |.+|+++|..++..|+ ++.++|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 68899 8999999999998876 899999987
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.023 Score=45.90 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=27.7
Q ss_pred ChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 128 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 128 ~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
++++++++||+||.++.-...++.+ ++++++++.+.+.
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~i~~~-------~ikpGa~Vidvg~ 101 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEKVPTE-------WIKPGATVINCSP 101 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCccCHH-------HcCCCCEEEEcCC
Confidence 5667889999999998765434433 4788998876543
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.023 Score=44.38 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=29.2
Q ss_pred cCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCC
Q psy13746 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL 175 (294)
Q Consensus 134 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~ 175 (294)
.++|+||.|+|.+... +++..+...+.+++++++.+|++.
T Consensus 64 ~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCcccc
Confidence 5899999999998644 333344455678999988877654
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.034 Score=51.35 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=63.8
Q ss_pred CccceEEE--ccccHHHHHHHHH-CCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++|+|| |.+|+..+..++. .+. +|.+||+++++.++..+.+.+.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------------------------------ 177 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------------------------------ 177 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------------------------------
Confidence 45789999 9999999988875 343 7999999998887765543200
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.| -.+...++++++++ +|+|+.|+|... .+|. .+++++++.|
T Consensus 178 -------------------~~------------~~v~~~~~~~~~l~-aDiVv~aTps~~----P~~~--~~~l~~g~hV 219 (326)
T PRK06046 178 -------------------VG------------CDVTVAEDIEEACD-CDILVTTTPSRK----PVVK--AEWIKEGTHI 219 (326)
T ss_pred -------------------cC------------ceEEEeCCHHHHhh-CCEEEEecCCCC----cEec--HHHcCCCCEE
Confidence 01 01344567888776 999999999753 2322 1246788887
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 220 ~~iGs 224 (326)
T PRK06046 220 NAIGA 224 (326)
T ss_pred EecCC
Confidence 65554
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.034 Score=54.35 Aligned_cols=39 Identities=26% Similarity=0.195 Sum_probs=35.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.+|.|+ |.+|...+..+...|.+|+++|+++++++.+++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 588899 999999999999999999999999999987765
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.059 Score=51.69 Aligned_cols=40 Identities=28% Similarity=0.333 Sum_probs=35.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.++|.|+ |.+|+.++..|.+.|++|+++|.+++.++...+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAE 272 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 4688888 999999999999999999999999998876554
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.04 Score=53.76 Aligned_cols=39 Identities=26% Similarity=0.180 Sum_probs=34.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.++.|+ |.+|...+..+...|..|+++|+++++++.+++
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 588899 999999999999999999999999998876654
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.1 Score=44.99 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=30.0
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
+-++|.|| |.+|.+-+..|++.|.+|++++.+..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 34689999 99999999999999999999998654
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.016 Score=54.65 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=32.0
Q ss_pred eEEE--ccccHHHHHHHHHCC-C-eEEEEeCChHHHHHHHH
Q psy13746 16 DGII--GLIGQAWAMIFASAG-Y-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 16 i~ii--G~mG~~iA~~~~~~G-~-~V~~~d~~~~~~~~~~~ 52 (294)
|.|+ |.+|+.++..|++.+ + +|++.||+.+++++..+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~ 41 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAE 41 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHh
Confidence 5677 999999999999976 4 89999999999887654
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.051 Score=50.59 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=63.2
Q ss_pred CccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |..+..-+..++. .. .+|.+|+|++++.+...+.+.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~------------------------------- 176 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG------------------------------- 176 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------------------------------
Confidence 45789999 9988887765554 23 4899999999998776554320
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.| -.+...++.++++++||+|+.|++.... ..++. .+++++++.|
T Consensus 177 -------------------~~------------~~v~~~~~~~~av~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV 221 (346)
T PRK07589 177 -------------------PG------------LRIVACRSVAEAVEGADIITTVTADKTN--ATILT--DDMVEPGMHI 221 (346)
T ss_pred -------------------cC------------CcEEEeCCHHHHHhcCCEEEEecCCCCC--Cceec--HHHcCCCcEE
Confidence 11 0145568899999999999999974320 01121 1346888877
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 222 ~aIGs 226 (346)
T PRK07589 222 NAVGG 226 (346)
T ss_pred EecCC
Confidence 65444
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.019 Score=51.98 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=33.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
+++.|| |-+|++++..|+..|. +|++++|++++.++..+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 578888 9999999999999997 79999999988766544
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.022 Score=47.05 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=24.6
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
-++|.|| +.+|+++|..|.+.|..|++.+..
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~ 69 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK 69 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC
Confidence 3688888 789999999999999999988744
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.021 Score=52.17 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=29.8
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
+|.|. |.+|+.++..|++.||+|++.+|+++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 68888 9999999999999999999999997653
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.071 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=19.8
Q ss_pred CeeeccChhhhccCCcEEEEcCC
Q psy13746 122 LISGTPVLRECLEDAIFIQESVP 144 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavp 144 (294)
++..++|.++|+.+||+||.++-
T Consensus 62 ~v~~t~d~~~al~gadfVi~~~~ 84 (419)
T cd05296 62 KVHLTTDRREALEGADFVFTQIR 84 (419)
T ss_pred EEEEeCCHHHHhCCCCEEEEEEe
Confidence 36778999999999999999853
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.03 Score=51.07 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=25.8
Q ss_pred ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 20 GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
|.+|..+|..++..|. ++.++|++++.++-
T Consensus 5 G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g 36 (299)
T TIGR01771 5 GNVGSSTAFALLNQGIADEIVLIDINKDKAEG 36 (299)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhH
Confidence 9999999999998875 79999998876543
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.032 Score=49.85 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=31.0
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
+++.+| |.+|+.+|..|++.|++|++.+|+++.++..
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l 44 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAAL 44 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 444445 8899999999999999999999998877654
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.034 Score=46.78 Aligned_cols=36 Identities=17% Similarity=0.083 Sum_probs=33.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
+||+|| |..|+.|+.-....||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 589999 999999999999999999999999988754
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.039 Score=49.89 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=27.2
Q ss_pred CccceEEE--cc-ccHHHHHHHHHCCCeEEEEeCC
Q psy13746 12 GFYPDGII--GL-IGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 12 ~~~~i~ii--G~-mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
.-++|+|| |. +|+++|..|...|..|+++++.
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR 191 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 34789999 44 9999999999999999999853
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.025 Score=54.98 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=33.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
-++++|+ |.+|++++..++..|++|+++++++++.+...
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la 372 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALA 372 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3578888 99999999999999999999999987766543
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.043 Score=48.36 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=34.8
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++.|. |.+|+++|..|++.|++|++.+++++.+++..+.+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 45 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELK 45 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 56666 889999999999999999999999988877666543
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.14 Score=43.97 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=29.0
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
+-++|.|| |.+|...+..|.+.|++|++++++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 34789999 9999999999999999999998653
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.026 Score=44.22 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=28.2
Q ss_pred ChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCC
Q psy13746 128 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF 174 (294)
Q Consensus 128 ~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~ 174 (294)
+.. .+.++|+||.|+|... ..++..++ +..++.|+++++..
T Consensus 60 ~~~-~~~~~Dvvf~a~~~~~--~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 60 DPE-ELSDVDVVFLALPHGA--SKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp SGH-HHTTESEEEE-SCHHH--HHHHHHHH---HHTTSEEEESSSTT
T ss_pred chh-HhhcCCEEEecCchhH--HHHHHHHH---hhCCcEEEeCCHHH
Confidence 444 5799999999999764 34555544 45677888887765
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.064 Score=49.20 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=27.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeCC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~ 43 (294)
+||+|| |.+|+++|..++..|. ++.++|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 389999 8999999999998884 89999998
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.058 Score=56.89 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=33.1
Q ss_pred CccceEEE--ccccHHHHHHHHHC-CCe-------------EEEEeCChHHHHHHHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASA-GYK-------------VSLYDVLSEQIENAKN 52 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~-G~~-------------V~~~d~~~~~~~~~~~ 52 (294)
..++|+|| |.||+..|..|++. +++ |++.|++++..+++.+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~ 624 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE 624 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH
Confidence 35799999 99999999999874 334 9999999888765543
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.044 Score=48.69 Aligned_cols=60 Identities=25% Similarity=0.207 Sum_probs=43.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+ .+..++.+|+.+ +.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-----------------------~~~~~~~~Dv~~~~~ 60 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS-----------------------LGVHPLSLDVTDEAS 60 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------------------CCCeEEEeeCCCHHH
Confidence 455555 899999999999999999999999887654321 145667788877 44
Q ss_pred HHHHHHH
Q psy13746 90 IENAKNT 96 (294)
Q Consensus 90 ~~~~~~~ 96 (294)
++...+.
T Consensus 61 ~~~~~~~ 67 (273)
T PRK06182 61 IKAAVDT 67 (273)
T ss_pred HHHHHHH
Confidence 5444443
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.069 Score=47.57 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=45.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
++.+| |.+|+.+|..|++.|++|++++++++..++..+.+. ....+..+-.|+.+ +.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~Dl~d~~~ 80 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG------------------GEPNVCFFHCDVTVEDD 80 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc------------------CCCceEEEEeecCCHHH
Confidence 44455 889999999999999999999999877655443321 01235566678777 45
Q ss_pred HHHHHHHHHH
Q psy13746 90 IENAKNTIQH 99 (294)
Q Consensus 90 ~~~~~~~~~~ 99 (294)
+++..+.+.+
T Consensus 81 ~~~~~~~~~~ 90 (280)
T PLN02253 81 VSRAVDFTVD 90 (280)
T ss_pred HHHHHHHHHH
Confidence 5555554433
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.055 Score=49.89 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=29.1
Q ss_pred CCCCCccceEEE---ccccHHHHHHHHHCC--CeEEEEeC
Q psy13746 8 PAQGGFYPDGII---GLIGQAWAMIFASAG--YKVSLYDV 42 (294)
Q Consensus 8 ~~~~~~~~i~ii---G~mG~~iA~~~~~~G--~~V~~~d~ 42 (294)
|.--+++||+|+ |.+|+.+|..++..| .++.++|+
T Consensus 3 ~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 3 PSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 344456799999 999999999998655 58999999
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.03 Score=46.69 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=27.7
Q ss_pred ccceEEE--ccc-cHHHHHHHHHCCCeEEEEeCCh
Q psy13746 13 FYPDGII--GLI-GQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 13 ~~~i~ii--G~m-G~~iA~~~~~~G~~V~~~d~~~ 44 (294)
-++|.|+ |.| |..+|..|.+.|.+|++.+++.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 3789999 876 8889999999999999999873
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.053 Score=48.13 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=35.3
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 53 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIK 53 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 366666 689999999999999999999999988877665543
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.057 Score=46.98 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
+.+|+++|..|++.|++|.+.+|+++.+++..+.+.
T Consensus 15 ~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~ 50 (227)
T PRK08862 15 SVLGRTISCHFARLGATLILCDQDQSALKDTYEQCS 50 (227)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 678999999999999999999999999887766553
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.054 Score=47.55 Aligned_cols=70 Identities=26% Similarity=0.230 Sum_probs=54.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.||++| .-+|.++|+.|+.+|++|.+..|..++++++...+.. .-.-+...|+.| +
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-------------------~~~~~~~~DVtD~~ 66 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-------------------GAALALALDVTDRA 66 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-------------------CceEEEeeccCCHH
Confidence 478888 6789999999999999999999999999988776531 224566778877 5
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTLQ 102 (294)
Q Consensus 89 ~~~~~~~~~~~~l~ 102 (294)
.++.+.+.+...++
T Consensus 67 ~~~~~i~~~~~~~g 80 (246)
T COG4221 67 AVEAAIEALPEEFG 80 (246)
T ss_pred HHHHHHHHHHHhhC
Confidence 66777776666553
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.042 Score=47.14 Aligned_cols=31 Identities=29% Similarity=0.269 Sum_probs=28.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 478888 9999999999999997 899999884
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.015 Score=52.69 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=66.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
.+|+|| |+.|.--|+...--|.+|++.|+|.+++........
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~------------------------------------ 212 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG------------------------------------ 212 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC------------------------------------
Confidence 478999 999999999888889999999999999876543211
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH-HHHHHHHHHhcccCCCeEEEec
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ-IKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~-~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+.+. -+.+-..++++++..+|+||-++--.-. .=+-+.+++.+.++++++|++.
T Consensus 213 ----------------~rv~---------~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 213 ----------------GRVH---------TLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ----------------ceeE---------EEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 1000 0112234677889999999987622110 0012557777788999988764
Q ss_pred C
Q psy13746 171 T 171 (294)
Q Consensus 171 t 171 (294)
.
T Consensus 268 A 268 (371)
T COG0686 268 A 268 (371)
T ss_pred E
Confidence 3
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.031 Score=51.55 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=26.2
Q ss_pred ceEEE---ccccHHHHHHHHHCCC-------eEEEEeCCh
Q psy13746 15 PDGII---GLIGQAWAMIFASAGY-------KVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~~ 44 (294)
||+|+ |.+|+.+|..++..|. ++.++|+++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPP 41 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCC
Confidence 78899 9999999999998663 599999987
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.038 Score=49.91 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=24.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| +.+|+++|..|.+.|..|+++.
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~h 189 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICH 189 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEec
Confidence 688899 6679999999999999999864
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.049 Score=51.40 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=33.9
Q ss_pred CccceEEE--ccccHHHHHHHHH-C-C-CeEEEEeCChHHHHHHHHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-A-G-YKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~-G-~~V~~~d~~~~~~~~~~~~ 53 (294)
..++++|| |.+++.-...++. . . -+|.+|+|++++.++..+.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~ 200 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATW 200 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHH
Confidence 45789999 9999999888876 3 2 4899999999998776544
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.063 Score=47.46 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=29.0
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+
T Consensus 16 ~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 16 TLIGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 799999999999999999999999887665543
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.062 Score=49.59 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=26.0
Q ss_pred ceEEE---ccccHHHHHHHHHCCC-------eEEEEeCChH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGY-------KVSLYDVLSE 45 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~~~ 45 (294)
||+|+ |.+|+.+|..++..|. ++.++|++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCc
Confidence 58888 8899999999998654 5999999764
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.043 Score=50.68 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=27.0
Q ss_pred cceEEE---ccccHHHHHHHHHCC-------CeEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAG-------YKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G-------~~V~~~d~~~~ 45 (294)
.||+|+ |.+|+.+|..++..| .+|.++|+++.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~ 44 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA 44 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc
Confidence 378899 999999999998854 58999999764
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.1 Score=44.76 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=32.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.++..+++.|++|++.+|+++...+..+
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLP 49 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHH
Confidence 456566 899999999999999999999999877655433
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.067 Score=49.12 Aligned_cols=32 Identities=38% Similarity=0.627 Sum_probs=26.2
Q ss_pred cceEEE---ccccHHHHHHHHH---CCCeEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFAS---AGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~---~G~~V~~~d~~~~ 45 (294)
+||+|| |.+|+.+|..+.. .++++.++|+++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC
Confidence 489999 7899999998855 3568999999854
|
|
| >KOG1014|consensus | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.06 Score=48.80 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=54.6
Q ss_pred ccceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 13 FYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 13 ~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
..+.+|| .-+|++.|+.||+.|++|.+.-|++++++...+.|.+.+ +++|-....|..
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~------------------~vev~~i~~Dft 109 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKY------------------KVEVRIIAIDFT 109 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHh------------------CcEEEEEEEecC
Confidence 3478888 679999999999999999999999999999988887532 456666665554
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTLQ 102 (294)
Q Consensus 89 ~~~~~~~~~~~~l~ 102 (294)
.-+...+.+++.+.
T Consensus 110 ~~~~~ye~i~~~l~ 123 (312)
T KOG1014|consen 110 KGDEVYEKLLEKLA 123 (312)
T ss_pred CCchhHHHHHHHhc
Confidence 43335665555553
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.034 Score=53.04 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=32.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~ 51 (294)
++|.|| |-||+.+|..|+..|. ++++++|++++.+...
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La 222 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKIT 222 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 578999 9999999999999995 7999999988765543
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.084 Score=46.19 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=33.9
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+.+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEI 49 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 345455 89999999999999999999999998877665544
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.099 Score=45.69 Aligned_cols=41 Identities=27% Similarity=0.238 Sum_probs=34.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.+++..+.+
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l 48 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESL 48 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHH
Confidence 345455 89999999999999999999999998887766554
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.085 Score=49.01 Aligned_cols=31 Identities=29% Similarity=0.257 Sum_probs=28.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|| |.+|+.+|..|+.+|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 578999 9999999999999998 899999986
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.099 Score=46.18 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=33.9
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+++.|. |.+|..+|..|++.|++|++++|+++.+++..+.+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 54 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQI 54 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 455555 78999999999999999999999998877665544
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.11 Score=44.90 Aligned_cols=43 Identities=28% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 11 GGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 11 ~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|..++|.|. |.+|..++..|++.|++|++++++++..+...+.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~ 48 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAE 48 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHH
Confidence 333567676 8999999999999999999999998877654443
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.086 Score=46.76 Aligned_cols=39 Identities=23% Similarity=0.143 Sum_probs=32.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++|.+.+++++.+++..+
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA 47 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 455555 899999999999999999999999988776544
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.095 Score=51.84 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=33.7
Q ss_pred ccceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 13 FYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 13 ~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
-.++.+| |.+|+.++..|++.|++|++++|+.++++...+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~ 123 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQS 123 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 4455555 8999999999999999999999999887665443
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.095 Score=45.97 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=35.8
Q ss_pred CCCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 10 QGGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 10 ~~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++.-+++.|. |.+|+.+|..|++.|++|++.+++++.+++..+.+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~ 54 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELA 54 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 4443445454 799999999999999999999999988776655543
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.094 Score=45.95 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=33.7
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++++| |.+|+.+|..|++.|++|.+.+++++.++...+.+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 53 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEI 53 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 45555 78999999999999999999999998887766554
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.055 Score=48.88 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=25.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|++++
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~ch 189 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCH 189 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEe
Confidence 688899 9999999999999999999885
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.056 Score=49.92 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=28.1
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
|.+|+ |-.|+++|..++-.|.+|.++++||-.
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~ 244 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIR 244 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchH
Confidence 44555 999999999999999999999999955
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.11 Score=45.60 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=31.3
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|+.+|..|++.|++|.+.+++++.+++....+.
T Consensus 12 ~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 47 (256)
T PRK08643 12 QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS 47 (256)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 889999999999999999999999988776655443
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.19 Score=45.23 Aligned_cols=97 Identities=15% Similarity=0.077 Sum_probs=52.0
Q ss_pred cceEEE--ccccHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII--GLIGQAWAMIFAS--AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~--~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
++|++| |-+-...-..... .|..|..+|+++++.+.+++-+..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~--------------------------------- 168 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVAS--------------------------------- 168 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----------------------------------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh---------------------------------
Confidence 589999 7776654433333 256799999999998877653320
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeec-c---ChhhhccCCcEEEEcCCc--chHHHHHHHHHHhcccCC
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT-P---VLRECLEDAIFIQESVPE--ILQIKHQVYRAIDIFMSS 163 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~-~---~~~~a~~~aDlVieavpe--~~~~k~~~~~~l~~~~~~ 163 (294)
.+ |+ ..++++. . +....++++|+|+.+.-. +.+-|.+++.++.+++++
T Consensus 169 ----------~~------~L----------~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ 222 (276)
T PF03059_consen 169 ----------DL------GL----------SKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAP 222 (276)
T ss_dssp ------------------HH-----------SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-T
T ss_pred ----------cc------cc----------cCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCC
Confidence 00 10 0122321 1 222236889999997543 333599999999999999
Q ss_pred CeEEEe
Q psy13746 164 NTILSS 169 (294)
Q Consensus 164 ~~ii~s 169 (294)
|++|+.
T Consensus 223 ga~l~~ 228 (276)
T PF03059_consen 223 GARLVV 228 (276)
T ss_dssp TSEEEE
T ss_pred CcEEEE
Confidence 998763
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.13 Score=44.93 Aligned_cols=41 Identities=29% Similarity=0.199 Sum_probs=34.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.+++..+.+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALI 51 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 455555 89999999999999999999999998877665544
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.065 Score=48.37 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=25.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|++++
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~ch 190 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCH 190 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 688899 9999999999999999999876
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.095 Score=46.76 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=26.7
Q ss_pred cceEEE--ccccHHHHHHHHHCC---Ce-EEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG---YK-VSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G---~~-V~~~d~~~~~~~ 48 (294)
.||+|| |.||+.++..+.+.+ ++ +.++|+++++.+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~ 43 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPP 43 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHH
Confidence 689999 999999999987643 44 457888875543
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.11 Score=44.98 Aligned_cols=41 Identities=27% Similarity=0.328 Sum_probs=33.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+++.|. |.+|+.++..|++.|++|++.+|+++..+...+.+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAEL 50 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 455555 88999999999999999999999998776655443
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.096 Score=46.95 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=23.9
Q ss_pred cceEEE---ccccHHHHHHHHH-CCCeEE-EEeCC
Q psy13746 14 YPDGII---GLIGQAWAMIFAS-AGYKVS-LYDVL 43 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~-~G~~V~-~~d~~ 43 (294)
.||+|+ |.||+.++..+.. .++++. ++|+.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 489999 8899999999986 577755 67843
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.048 Score=51.69 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=35.1
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|| |-||.-.|.+|+.+| .+|++.+|+.++..+..++
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~ 221 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKK 221 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH
Confidence 578889 999999999999999 6899999999988766543
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.057 Score=49.09 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=25.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvch 198 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVH 198 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence 689999 8999999999999999999885
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.12 Score=45.13 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=34.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++++|+++..++....+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 48 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEAL 48 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 456666 89999999999999999999999998877665544
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.12 Score=44.47 Aligned_cols=41 Identities=27% Similarity=0.253 Sum_probs=34.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|+ |.+|+.++..|++.|++|++.+|+++...+..+.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAEL 50 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHH
Confidence 456666 89999999999999999999999998877665543
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.095 Score=46.22 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=34.2
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++.+| |.+|+.+|..|++.|++|++.+|+++.+++..+.+.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 53 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLR 53 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 45555 789999999999999999999999988877665543
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.16 Score=43.93 Aligned_cols=31 Identities=19% Similarity=0.124 Sum_probs=27.9
Q ss_pred eEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 16 DGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 16 i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
|+|+ |.+|++++..|++.|++|.+.-|++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~ 34 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS 34 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch
Confidence 5677 999999999999999999999999843
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.11 Score=46.39 Aligned_cols=41 Identities=29% Similarity=0.294 Sum_probs=33.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|+++|++++.+++..+.+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAEL 50 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence 455555 78999999999999999999999988777655543
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.061 Score=48.52 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=25.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~ch 189 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCH 189 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEc
Confidence 588899 8999999999999999998875
|
|
| >KOG1495|consensus | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.25 Score=44.09 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=32.4
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
..||.|+ |.+|.+.|..++.+|. ++.++|.++++++
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklk 59 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLK 59 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhh
Confidence 5799999 9999999999998885 8999999998765
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.12 Score=47.85 Aligned_cols=62 Identities=24% Similarity=0.204 Sum_probs=44.3
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+.+.. + ...+.++..|+.+ ++++++.+.+.
T Consensus 17 ~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~----~-------------g~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 17 SGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA----L-------------GAEVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----c-------------CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 7899999999999999999999999988876655431 0 0123345667776 55555555443
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.13 Score=46.55 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=33.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+|+++.+++..+.+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l 84 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRI 84 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 344444 89999999999999999999999998887765544
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.12 Score=45.36 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=33.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|. |.+|+.++..|++.|++|.+++++++.+++..+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 44 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAE 44 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 456666 8999999999999999999999999887766543
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.12 Score=47.82 Aligned_cols=42 Identities=31% Similarity=0.225 Sum_probs=34.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++|.|. |.+|+.+|..|++.|++|++++++++.+++..+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~ 53 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR 53 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 344444 889999999999999999999999988877665543
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.36 Score=44.44 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=26.6
Q ss_pred ccceEEE--ccccHHHHHHHHHC-CCeEE-EEeCCh
Q psy13746 13 FYPDGII--GLIGQAWAMIFASA-GYKVS-LYDVLS 44 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~-G~~V~-~~d~~~ 44 (294)
..||+|+ |.||+..+..+.+. ++++. ++|+++
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 3689999 99999999988765 78876 589985
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.12 Score=45.57 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=28.4
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
|.+|+.+|..|++.|++|++.+++.+.+++..
T Consensus 15 ~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~ 46 (262)
T TIGR03325 15 SGLGRAIVDRFVAEGARVAVLDKSAAGLQELE 46 (262)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 78999999999999999999999987766543
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.074 Score=48.32 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=25.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~h 189 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAH 189 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence 688899 8999999999999999998874
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.19 Score=43.93 Aligned_cols=30 Identities=27% Similarity=0.221 Sum_probs=27.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCC---eEEEEeCC
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY---KVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~---~V~~~d~~ 43 (294)
++|.|+ |.+|+++|..++..|. +++++||+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 588888 9999999999999997 59999999
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.13 Score=45.02 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=35.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
+++.|. |.+|+.++..|++.|++|.+.+++++..++..+.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 52 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEIN 52 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Confidence 455555 899999999999999999999999988877666553
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.081 Score=47.73 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=25.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtich 188 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAH 188 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 688899 8999999999999999999774
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.15 Score=44.67 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=34.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++++++++.++...+.+
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 55 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAAL 55 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 455555 89999999999999999999999998877665544
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.074 Score=47.96 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=25.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtich 187 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAH 187 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEC
Confidence 688899 8999999999999999999774
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.12 Score=46.18 Aligned_cols=40 Identities=33% Similarity=0.331 Sum_probs=33.4
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+++++.+++..+.+
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l 50 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHL 50 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45555 89999999999999999999999998877665544
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.15 Score=44.57 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=34.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+.+
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 53 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEI 53 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 566666 99999999999999999999999998877665543
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.079 Score=47.90 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=25.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtich 186 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAH 186 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeC
Confidence 688899 8999999999999999999765
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.15 Score=44.71 Aligned_cols=36 Identities=36% Similarity=0.337 Sum_probs=31.7
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+.+.
T Consensus 17 ~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 17 QGIGAAIARAFAREGAAVALADLDAALAERAAAAIA 52 (260)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 799999999999999999999999988877665543
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.14 Score=46.64 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=30.0
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|.+|+.+|..|++.|++|++.+|+++..++..+.
T Consensus 36 ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~ 69 (315)
T PRK06196 36 SGLGLETTRALAQAGAHVIVPARRPDVAREALAG 69 (315)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 8899999999999999999999999887765543
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.15 Score=44.16 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=34.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAAL 51 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 456555 89999999999999999999999998877665543
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.096 Score=45.27 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=32.2
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++.|. |.+|+++|..|++.|++|++.++++++++...+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 56566 789999999999999999999999988765543
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.081 Score=47.63 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=25.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~ch 189 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICH 189 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence 688999 8999999999999999999886
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.16 Score=44.22 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=33.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|. |.+|+.+|..|++.|++|++.+++++..+...+.
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 48 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAA 48 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHH
Confidence 456566 8999999999999999999999998876655443
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.068 Score=48.38 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=26.2
Q ss_pred cceEEE--c-cccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGII--G-LIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii--G-~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
++|.|+ | ..|+++|..|+..|.+|+++++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 688899 5 5999999999999999999986
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.16 Score=44.51 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|..+|..|++.|++|++.+++++.++...+.+.
T Consensus 16 ~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 51 (254)
T PRK07478 16 SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIR 51 (254)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 789999999999999999999999988877665543
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.18 Score=45.63 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=32.9
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|. |.+|..+|..|++.|++|.+.+++++.++...+.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~ 52 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAE 52 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 344444 8899999999999999999999999887765543
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.13 Score=45.92 Aligned_cols=37 Identities=19% Similarity=-0.061 Sum_probs=31.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
++|.|. |.+|+.++..|++.|++|++.+++++.++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l 44 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADF 44 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHH
Confidence 445555 8999999999999999999999998876544
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.16 Score=44.68 Aligned_cols=31 Identities=13% Similarity=-0.079 Sum_probs=26.3
Q ss_pred cceEEE--c----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII--G----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
.|+++| | -+|+++|..|++.|++|++.++++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 366666 3 499999999999999999999984
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.13 Score=44.79 Aligned_cols=40 Identities=28% Similarity=0.203 Sum_probs=33.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
++|.|. |.+|..+|..|++.|++|++.+++++..+...+.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~ 44 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADD 44 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHH
Confidence 456566 8999999999999999999999999877655443
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.15 Score=46.23 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=27.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCe-EEEEeCChH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYK-VSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~-V~~~d~~~~ 45 (294)
+++.|+ |-.|+++|..|+..|.+ |++++|+++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 456666 88899999999999986 999999974
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.09 Score=47.42 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=25.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~ch 188 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCH 188 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 688889 8999999999999999999766
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.11 Score=45.29 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=31.0
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++.|. |.+|+.+|..|++.|++|++++|+++.+++..
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~ 42 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELH 42 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 44444 89999999999999999999999988766543
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.16 Score=44.77 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=29.2
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+
T Consensus 16 ~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 16 SGIGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 789999999999999999999999988766543
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.18 Score=44.04 Aligned_cols=40 Identities=33% Similarity=0.291 Sum_probs=32.9
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++.|. |.+|+.+|..|++.|++|++.+++++.+++..+.+
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 45 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEI 45 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 44444 78999999999999999999999988877665544
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.099 Score=45.54 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=46.0
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
+-+|+++|..|++.|++|++.++++++++...+.+.+ ..|.+++.+|+.+ +.++...+.+.
T Consensus 6 ~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~------------------~~~~~~~~~D~~~~~~v~~~~~~~~ 67 (241)
T PF13561_consen 6 SGIGRAIARALAEEGANVILTDRNEEKLADALEELAK------------------EYGAEVIQCDLSDEESVEALFDEAV 67 (241)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHH------------------HTTSEEEESCTTSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHH------------------HcCCceEeecCcchHHHHHHHHHHH
Confidence 3579999999999999999999999987655554432 1245578888866 55666666554
Q ss_pred HHH
Q psy13746 99 HTL 101 (294)
Q Consensus 99 ~~l 101 (294)
+.+
T Consensus 68 ~~~ 70 (241)
T PF13561_consen 68 ERF 70 (241)
T ss_dssp HHH
T ss_pred hhc
Confidence 443
|
... |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.11 Score=46.84 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=25.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
++|+|| ..+|+++|..|.+.|..|+++..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs 191 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHR 191 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEEC
Confidence 688899 66999999999999999998864
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.1 Score=47.19 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=25.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|++++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~h 195 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCH 195 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEe
Confidence 688899 6699999999999999999888
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.06 Score=48.63 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=25.3
Q ss_pred cceEEE--c-cccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII--G-LIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii--G-~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| | .+|+++|..|.+.|..|++++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h 188 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCH 188 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEe
Confidence 689999 4 899999999999999999885
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.15 Score=44.48 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=32.1
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+|.|. |.+|..+|..|+..|++|++.+++++.++...+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45566 889999999999999999999999987765443
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.19 Score=44.02 Aligned_cols=42 Identities=24% Similarity=0.162 Sum_probs=34.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++|.|. |.+|+.+|..|++.|++|.+.+++++.++...+.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK 55 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 455555 899999999999999999999999988776665543
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.21 Score=43.81 Aligned_cols=39 Identities=28% Similarity=0.297 Sum_probs=33.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+++.|. |.+|+.+|..|++.|++|++.+++++..+...+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 567777 899999999999999999999999887665443
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.19 Score=45.86 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=34.8
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++++| +.+|..+|..|++.|++|++.+|++++.+++.+.+.
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~ 59 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIR 59 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 55566 889999999999999999999999998877766554
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.18 Score=44.17 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=31.5
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|+++|..|++.|++|++.+++++.+++..+.+.
T Consensus 19 ~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~ 54 (254)
T PRK08085 19 QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLR 54 (254)
T ss_pred ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH
Confidence 889999999999999999999999988777665543
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.31 Score=42.89 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 21 LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 21 ~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
-+|+.+|..|++.|++|++.|++++.++...+.+.
T Consensus 29 gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK07831 29 GIGSATARRALEEGARVVISDIHERRLGETADELA 63 (262)
T ss_pred cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 49999999999999999999999988877766554
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.25 Score=42.97 Aligned_cols=41 Identities=32% Similarity=0.345 Sum_probs=33.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+++.|. |.+|..++..|++.|++|++.+|+++..+...+.+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~ 50 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQI 50 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 455555 89999999999999999999999987766555443
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.11 Score=47.05 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=25.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtich 190 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICH 190 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 688899 8999999999999999999775
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.21 Score=44.43 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=42.8
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
|.+|+.+|..|++.|++|++.+++ +.+++..+.+.+. ...+.++.+|+.+ +.++...+.+.
T Consensus 16 ~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~-----------------~~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (272)
T PRK08589 16 TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN-----------------GGKAKAYHVDISDEQQVKDFASEIK 77 (272)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc-----------------CCeEEEEEeecCCHHHHHHHHHHHH
Confidence 789999999999999999999999 6666555444310 0124556677776 45555555444
Q ss_pred HH
Q psy13746 99 HT 100 (294)
Q Consensus 99 ~~ 100 (294)
+.
T Consensus 78 ~~ 79 (272)
T PRK08589 78 EQ 79 (272)
T ss_pred HH
Confidence 43
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.091 Score=47.64 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=25.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~ch 191 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVH 191 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeC
Confidence 688888 8999999999999999999776
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.11 Score=46.81 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=25.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtich 188 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAH 188 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 688899 8999999999999999999864
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.18 Score=44.19 Aligned_cols=42 Identities=26% Similarity=0.064 Sum_probs=34.1
Q ss_pred CCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 11 GGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 11 ~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.-++|.|+ |.+|..++..+++.|++|++.++++..++...+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAAD 49 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 344566666 899999999999999999999999887665443
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.28 Score=42.43 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=34.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++++|+++.++...+.+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH
Confidence 555555 89999999999999999999999998877655443
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.18 Score=46.87 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=25.7
Q ss_pred cceEEE--ccccHHHHHHHHH-CCCeEE-EEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFAS-AGYKVS-LYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~-~G~~V~-~~d~~~~~~~ 48 (294)
.||+|+ |.||+.++..+.. .++++. ++|++++...
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~ 40 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEA 40 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHH
Confidence 489999 9999999998876 456655 6676654433
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.16 Score=44.53 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=30.1
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|.+|+.+|..|++.|++|++.|++.+..++..+.
T Consensus 16 ~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~ 49 (257)
T PRK07067 16 SGIGEAVAERYLAEGARVVIADIKPARARLAALE 49 (257)
T ss_pred chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH
Confidence 8999999999999999999999999887765443
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.12 Score=46.75 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=24.5
Q ss_pred cceEEE---ccccHHHHHHHHH--CCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFAS--AGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~--~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+ +|..|+++.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvch 191 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCH 191 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeC
Confidence 688888 8999999999998 788898775
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.097 Score=46.28 Aligned_cols=60 Identities=22% Similarity=0.179 Sum_probs=43.3
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQI 90 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~ 90 (294)
+|.|. |.+|+.+|..|++.|++|++.+++++..+. ..++.++..|+.+ +.+
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~-------------------------~~~~~~~~~D~~d~~~~ 60 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP-------------------------IPGVELLELDVTDDASV 60 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc-------------------------cCCCeeEEeecCCHHHH
Confidence 44444 899999999999999999999999765431 1246677788877 556
Q ss_pred HHHHHHHHH
Q psy13746 91 ENAKNTIQH 99 (294)
Q Consensus 91 ~~~~~~~~~ 99 (294)
+++.+.+.+
T Consensus 61 ~~~~~~~~~ 69 (270)
T PRK06179 61 QAAVDEVIA 69 (270)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.29 Score=42.89 Aligned_cols=52 Identities=25% Similarity=0.241 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 1 MSNVASFPAQGGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|++...+ ++.-++|.|. |.+|+.+|..|++.|++|++.+++.+..+...+.+
T Consensus 1 ~~~~~~~--~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l 55 (255)
T PRK06113 1 MFNSDNL--RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI 55 (255)
T ss_pred CCCcccc--CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 5555433 3333556566 89999999999999999999999988877655544
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.1 Score=47.03 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=24.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.++|..|+++.
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~h 188 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICH 188 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 688899 6999999999999999998764
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.25 Score=44.68 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=33.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++.+| |.+|+.+|..|++.|++|++.+|+++..+.+.+.+
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l 60 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARI 60 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 44555 89999999999999999999999988877655444
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.13 Score=47.90 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=25.7
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
-++|+|| ..+|+++|..|.++|..|+++.
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicH 262 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQREDATVSIVH 262 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCeEEEeC
Confidence 3688899 8999999999999999999874
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.27 Score=43.16 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=34.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+++.|. |.+|..+|..|++.|++|++.+++++.++.....+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i 56 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHL 56 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 455555 89999999999999999999999998877665544
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.13 Score=47.60 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=25.3
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
-++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~ATVTicH 245 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHDATVSTVH 245 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCEEEEEc
Confidence 3688889 8999999999999999998765
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.12 Score=46.54 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=24.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
++|.|+ ...|+++|..+...|..|++...+
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~ 185 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSK 185 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecC
Confidence 678888 588999998888888888887744
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.28 Score=43.00 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=30.7
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSE-QIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~-~~~~~~~~i 54 (294)
++.+| |.+|+.+|..|++.|++|++.+++.+ .+++..+.+
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l 53 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHI 53 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH
Confidence 55566 78999999999999999999999764 344444433
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.19 Score=44.63 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=27.7
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
|.+|+.+|..+++.|++|++.+++++.++..
T Consensus 11 ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (274)
T PRK05693 11 SGIGRALADAFKAAGYEVWATARKAEDVEAL 41 (274)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 8999999999999999999999998776543
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.21 Score=38.82 Aligned_cols=100 Identities=18% Similarity=0.135 Sum_probs=57.5
Q ss_pred cceEEE------ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII------GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii------G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
++|+|| +..|..+...+.+.|++|+.++...+.+.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~--------------------------------------- 41 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL--------------------------------------- 41 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET---------------------------------------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC---------------------------------------
Confidence 468888 78899999999999999998876542211
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
| +....++.|.-...|+++.++|.+. -.++++++.+. ..+.++
T Consensus 42 --------------------G--------------~~~y~sl~e~p~~iDlavv~~~~~~--~~~~v~~~~~~-g~~~v~ 84 (116)
T PF13380_consen 42 --------------------G--------------IKCYPSLAEIPEPIDLAVVCVPPDK--VPEIVDEAAAL-GVKAVW 84 (116)
T ss_dssp --------------------T--------------EE-BSSGGGCSST-SEEEE-S-HHH--HHHHHHHHHHH-T-SEEE
T ss_pred --------------------c--------------EEeeccccCCCCCCCEEEEEcCHHH--HHHHHHHHHHc-CCCEEE
Confidence 1 3455677762378999999999765 34777777654 445555
Q ss_pred EecCCCCCHHHHHhhc-CCCCceee
Q psy13746 168 SSSTSSFLPSVLSEHS-THRSQFIV 191 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l-~~~~~~ig 191 (294)
. .+++... ++.+.+ .+..+++|
T Consensus 85 ~-~~g~~~~-~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 85 L-QPGAESE-ELIEAAREAGIRVIG 107 (116)
T ss_dssp E--TTS--H-HHHHHHHHTT-EEEE
T ss_pred E-EcchHHH-HHHHHHHHcCCEEEe
Confidence 4 3444333 333332 24445554
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.32 Score=42.08 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=33.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.++..|++.|++|++.+|+++.+....+.+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELV 50 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 456666 89999999999999999999999987766554443
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.23 Score=43.18 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=30.6
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++.+++++.++...+.+
T Consensus 12 ~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 46 (248)
T PRK08251 12 SGLGAGMAREFAAKGRDLALCARRTDRLEELKAEL 46 (248)
T ss_pred CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 89999999999999999999999998877665443
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.17 Score=45.82 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=28.7
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+|.|. |.+|+.++..|++.|++|++++++++.
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 36 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD 36 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence 56677 999999999999999999999998754
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.32 Score=42.31 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=33.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|..++..|++.|++|++.+++++..++..+.+
T Consensus 13 k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 13 RIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Confidence 344444 89999999999999999999999998877655444
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.3 Score=40.59 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=32.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
++++| |.+|+++|..|+..|++|.++|++++.++...+.
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~ 59 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEE 59 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 56666 5699999999999999999999998876655443
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.18 Score=45.00 Aligned_cols=41 Identities=39% Similarity=0.379 Sum_probs=33.2
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|+++| |.+|+.+|..|+ .|++|++.|++++.+++..+.+
T Consensus 1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l 44 (275)
T PRK06940 1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTL 44 (275)
T ss_pred CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence 3577778 789999999996 8999999999988877655443
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.27 Score=43.04 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.6
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
|.+|+.+|..|++.|++|++.|++++..++.
T Consensus 20 g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~ 50 (255)
T PRK05717 20 RGIGLGIAAWLIAEGWQVVLADLDRERGSKV 50 (255)
T ss_pred chHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 8999999999999999999999998765543
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.15 Score=46.19 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=27.9
Q ss_pred cChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 127 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 127 ~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
.++.+.++.||+||.++.-.--++.+ ++++++++++...
T Consensus 192 ~~l~~~~~~ADIvV~AvG~p~~i~~~-------~ik~GavVIDvGi 230 (287)
T PRK14181 192 ENLTEILKTADIIIAAIGVPLFIKEE-------MIAEKAVIVDVGT 230 (287)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHH-------HcCCCCEEEEecc
Confidence 46666789999999998754433333 4788999887553
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.34 Score=41.97 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=33.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
++|.|+ |.+|..++..|++.|++|++.+|+++..+.....
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAE 48 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 466666 8999999999999999999999999887665443
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.29 Score=43.80 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=27.1
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
.|+++| | -+|+++|..|++.|++|++.+++.+
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~ 42 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA 42 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH
Confidence 367777 4 3899999999999999999999853
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.27 Score=43.03 Aligned_cols=39 Identities=28% Similarity=0.314 Sum_probs=32.2
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
++.|. |.+|+.+|..|++.|++|++.+++++.++...+.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~ 45 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADA 45 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45455 7899999999999999999999999887665443
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.33 Score=42.74 Aligned_cols=40 Identities=30% Similarity=0.265 Sum_probs=33.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
++|.|. |.+|..++..+++.|++|++.+++++.++.....
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAAR 48 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 455555 8899999999999999999999999887765443
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.47 Score=35.78 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=27.7
Q ss_pred ceEEEccccHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGIIGLIGQAWAMIFAS--AGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~iiG~mG~~iA~~~~~--~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+|.-||-=-..++..+++ .|.+|+.+|.+++.++.++++.
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 555552222344444555 8999999999999999887764
|
... |
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.25 Score=43.29 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=32.7
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+|.|. |.+|+.+|..|++.|++|.++|++++..+...+.+
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~ 46 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEI 46 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 34444 89999999999999999999999988776655443
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.29 Score=43.44 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=33.2
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++.|. |.+|+.+|..|++.|++|++++++++.++...+.+
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~ 44 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADA 44 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45555 89999999999999999999999998877665544
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.33 Score=41.94 Aligned_cols=41 Identities=29% Similarity=0.316 Sum_probs=33.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLY-DVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~-d~~~~~~~~~~~~i 54 (294)
++|.|+ |.+|..+|..|++.|++|++. +++++..+...+.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~ 50 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEI 50 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 466666 899999999999999999999 99988776655443
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.37 Score=41.51 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=33.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|..+++.|++.|++|++.+++++.++...+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 466666 889999999999999999999999988766543
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.71 Score=40.02 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=71.0
Q ss_pred eeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcC--CC--CceeeeeecCCC
Q psy13746 123 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST--HR--SQFIVAHPVNPP 198 (294)
Q Consensus 123 i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~--~~--~~~ig~h~~~p~ 198 (294)
+..++|-.++++++|+||.=+|-.- ..-.+++++.+-+++++|++ ++.+++.+.....+. +. -+.-..||-.-|
T Consensus 127 ~~vttddreavedad~iitwlpkg~-~qpdiikkfiddipegaivt-hactipttkf~kifed~gredlnvtsyhpg~vp 204 (343)
T COG4074 127 IVVTTDDREAVEDADMIITWLPKGG-VQPDIIKKFIDDIPEGAIVT-HACTIPTTKFKKIFEDMGREDLNVTSYHPGTVP 204 (343)
T ss_pred eEEecCcHhhhcCCCeEEEeccCCC-CCccHHHHHHhcCCCCceEe-eecccchHHHHHHHHHhCccccceeccCCCCCc
Confidence 4566777779999999999888632 23467788888899999985 777888776555443 11 123334443323
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 199 YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 199 ~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
....-+-|..| ..++++++.+-++-+.-....+.+
T Consensus 205 emkgqvyiaeg-yaseeavn~lyelg~karg~afk~ 239 (343)
T COG4074 205 EMKGQVYIAEG-YASEEAVNALYELGEKARGLAFKV 239 (343)
T ss_pred cccCcEEEecc-cccHHHHHHHHHHHHHhhcccccC
Confidence 33334445555 468899998888877765555554
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.65 Score=38.16 Aligned_cols=36 Identities=22% Similarity=0.086 Sum_probs=30.7
Q ss_pred CCC--CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 7 FPA--QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 7 ~~~--~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
||- +.+-++|.|| |.+|...+..|...|++|++++.
T Consensus 5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 665 4555789999 99999999999999999999953
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.33 Score=44.36 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=30.5
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|..+|..|++.|++|++.+|+++..+...+.+
T Consensus 16 ~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l 50 (322)
T PRK07453 16 SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQEL 50 (322)
T ss_pred ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence 88999999999999999999999998877665543
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.26 Score=45.04 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=33.1
Q ss_pred cceEEE----ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.+| +.+|.++|..|+..| ++|++.+|++++.+++.+.
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~ 47 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKS 47 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 456666 679999999999999 9999999999887765543
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.15 Score=43.93 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=29.8
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
+|.|. |.+|+.+|..|++.|++|++++++++..+.
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 40 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTA 40 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHH
Confidence 44455 899999999999999999999999877654
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.27 Score=45.70 Aligned_cols=34 Identities=32% Similarity=0.280 Sum_probs=29.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~ 47 (294)
.+|.|+ |.+|+.+|..|+.+|. +++++|.+.-..
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~ 61 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEW 61 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCH
Confidence 478899 9999999999999998 999999975433
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.36 Score=41.75 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=32.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|. |.+|+.++..|++.|++|++.+|+++..+...+.
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~ 50 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEE 50 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 455555 7999999999999999999999998876655443
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.2 Score=43.67 Aligned_cols=31 Identities=19% Similarity=-0.021 Sum_probs=27.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
++|.|. |.+|+++|..|++.|++|++.++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc
Confidence 355555 8999999999999999999999987
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.33 Score=43.08 Aligned_cols=39 Identities=21% Similarity=0.076 Sum_probs=32.4
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
.+.|. |.+|+.+|..|++.|++|++++++++.++...+.
T Consensus 5 ~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 46 (280)
T PRK06914 5 IAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQ 46 (280)
T ss_pred EEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 44454 8999999999999999999999999887765443
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.33 Score=43.13 Aligned_cols=35 Identities=37% Similarity=0.453 Sum_probs=30.4
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|.+++++++..+...+.+
T Consensus 20 ~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 54 (278)
T PRK08277 20 GVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEI 54 (278)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 78999999999999999999999988776655544
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.28 Score=43.61 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=32.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 45 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAE 45 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 345555 899999999999999999999999988765443
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.29 Score=42.59 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=33.0
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+|.|. |.+|+.++..|++.|++|++++++++..++..+.+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~ 45 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVA 45 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 44444 89999999999999999999999988777665543
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.29 Score=42.82 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=43.7
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
+.+|.++|..|+ .|++|++.+|+++.+++..+.+... ......+.-+|+.+ ++++.+.+++.
T Consensus 10 ~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~Dv~d~~~v~~~~~~~~ 72 (246)
T PRK05599 10 SDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQR----------------GATSVHVLSFDAQDLDTHRELVKQTQ 72 (246)
T ss_pred cHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc----------------cCCceEEEEcccCCHHHHHHHHHHHH
Confidence 679999999998 5999999999999888766655310 00113455677777 55666665544
Q ss_pred H
Q psy13746 99 H 99 (294)
Q Consensus 99 ~ 99 (294)
+
T Consensus 73 ~ 73 (246)
T PRK05599 73 E 73 (246)
T ss_pred H
Confidence 4
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.35 Score=41.95 Aligned_cols=41 Identities=32% Similarity=0.368 Sum_probs=33.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|.+++++++...+..+.+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 47 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADI 47 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH
Confidence 455555 79999999999999999999999998776655443
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.24 Score=42.79 Aligned_cols=28 Identities=21% Similarity=0.052 Sum_probs=25.5
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
|.+|+.+|..|++.|++|++.+++++..
T Consensus 12 ~gIG~~ia~~l~~~G~~V~~~~r~~~~~ 39 (236)
T PRK06483 12 QRIGLALAWHLLAQGQPVIVSYRTHYPA 39 (236)
T ss_pred ChHHHHHHHHHHHCCCeEEEEeCCchhH
Confidence 7899999999999999999999987653
|
|
| >KOG1370|consensus | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.35 Score=43.92 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=62.6
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
-.|++|| |-+|.+-|+.|.-.|..|++.+++|-..-++
T Consensus 213 aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQA--------------------------------------- 253 (434)
T KOG1370|consen 213 AGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQA--------------------------------------- 253 (434)
T ss_pred cccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHH---------------------------------------
Confidence 3578888 9999999999999999999999998432111
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.+ .| .. .+.++++++..|+++.+.-.. ..+..+..+.++.++|+.
T Consensus 254 ----------aM-----eG--------------~~-V~tm~ea~~e~difVTtTGc~----dii~~~H~~~mk~d~IvC- 298 (434)
T KOG1370|consen 254 ----------AM-----EG--------------YE-VTTLEEAIREVDIFVTTTGCK----DIITGEHFDQMKNDAIVC- 298 (434)
T ss_pred ----------Hh-----hc--------------cE-eeeHHHhhhcCCEEEEccCCc----chhhHHHHHhCcCCcEEe-
Confidence 01 01 22 245778899999999987663 344555556688899986
Q ss_pred cCCC
Q psy13746 170 STSS 173 (294)
Q Consensus 170 ~tSt 173 (294)
|...
T Consensus 299 N~Gh 302 (434)
T KOG1370|consen 299 NIGH 302 (434)
T ss_pred cccc
Confidence 5543
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.27 Score=42.84 Aligned_cols=37 Identities=19% Similarity=0.124 Sum_probs=31.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
++|.|. |.+|..+|..|++.|++|++.++++++++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~ 42 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM 42 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence 355566 8999999999999999999999999876654
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.17 Score=44.50 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=32.5
Q ss_pred CCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHH
Q psy13746 11 GGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIE 48 (294)
Q Consensus 11 ~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~ 48 (294)
...++|.|+ |.+|+.++..|++.|++|+++.|+++...
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 55 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK 55 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 344688888 89999999999999999999999987643
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.26 Score=42.24 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=30.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
+++.|. |.+|+.+|..|++.|++|++.+++++.+++.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~ 41 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAAL 41 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 345555 8999999999999999999999998776543
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.36 Score=41.83 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=32.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.+++..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 48 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARA 48 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence 355555 899999999999999999999999877665443
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.34 Score=43.24 Aligned_cols=34 Identities=21% Similarity=0.119 Sum_probs=28.5
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
.|+++| | -+|+++|..|++.|++|.+.+++++..
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~ 46 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALG 46 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHH
Confidence 477777 3 699999999999999999999986443
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.34 Score=42.88 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=33.5
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+|.|. |.+|+.+|..|++.|++|++.+++++.++.....+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 44 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLL 44 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45566 89999999999999999999999998877655543
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.33 Score=42.13 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=31.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEE-EeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSL-YDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~-~d~~~~~~~~~~~~i 54 (294)
+++.|. |.+|+.+|..|++.|++|++ .+++++..+++.+.+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~ 49 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEI 49 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 456555 89999999999999999876 578877766555544
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.29 Score=48.07 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=47.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
+++.|+ |.+|+.+|..|++.|++|++.+++++.+++..+.+.+. ...+.+..+|+.+ +.
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~Dv~~~~~ 378 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA-----------------GAVAHAYRVDVSDADA 378 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----------------CCeEEEEEcCCCCHHH
Confidence 455555 89999999999999999999999998887766554310 1124556677777 55
Q ss_pred HHHHHHHHH
Q psy13746 90 IENAKNTIQ 98 (294)
Q Consensus 90 ~~~~~~~~~ 98 (294)
+++..+.+.
T Consensus 379 ~~~~~~~~~ 387 (582)
T PRK05855 379 MEAFAEWVR 387 (582)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.38 Score=42.53 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=33.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|+..|++|++.+|+++.++...+.+
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 53 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQL 53 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 355555 89999999999999999999999988776654433
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.24 Score=47.54 Aligned_cols=33 Identities=27% Similarity=0.183 Sum_probs=29.7
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
+-++|.|+ |.+|.++|..|++.|++|+++|+++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34688888 8899999999999999999999986
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.27 Score=44.52 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=34.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|+ |-.|++++..|+..|. ++++++|++++.+...+.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~ 170 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 578888 9999999999999996 799999999887765543
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.26 Score=44.14 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=22.4
Q ss_pred cceEEE--ccccHHHHHHHHHC-CCeEE-EEeC
Q psy13746 14 YPDGII--GLIGQAWAMIFASA-GYKVS-LYDV 42 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~-G~~V~-~~d~ 42 (294)
.||+|| |.||+.++..+.+. +.++. ++++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~ 34 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVP 34 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEc
Confidence 589999 99999999998875 55554 4443
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.32 Score=42.06 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=32.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
+++.|. |.+|+.++..|++.|++|++.+++++.+++..
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~ 50 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLA 50 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 466666 78999999999999999999999988766543
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.13 Score=43.43 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=41.0
Q ss_pred CceeEEeecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcc
Q psy13746 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEI 146 (294)
Q Consensus 77 ~~~v~~~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~ 146 (294)
+-++.++|.|.+.++.+..-.++..++. | . .-++..++|..+|+++||+||.++-..
T Consensus 28 ~~ei~L~Did~~RL~~~~~~~~~~~~~~---~-~---------~~~v~~ttd~~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 28 GSEIVLMDIDEERLEIVERLARRMVEEA---G-A---------DLKVEATTDRREALEGADFVINQIRVG 84 (183)
T ss_dssp EEEEEEE-SCHHHHHHHHHHHHHHHHHC---T-T---------SSEEEEESSHHHHHTTESEEEE---TT
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHHhc---C-C---------CeEEEEeCCHHHHhCCCCEEEEEeeec
Confidence 4589999999999998888777666432 1 0 124677999999999999999987654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.38 Score=42.41 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|..+|..|+..|++|++.+++++.+++..+.+
T Consensus 20 ~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~ 54 (265)
T PRK07097 20 YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAY 54 (265)
T ss_pred chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 88999999999999999999999998887665544
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.49 Score=42.05 Aligned_cols=47 Identities=28% Similarity=0.286 Sum_probs=36.0
Q ss_pred CCCCCCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 7 FPAQGGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 7 ~~~~~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|+.++.-+.+.|. |.+|+.++..|++.|++|.+.+++++.++...+.
T Consensus 4 ~~~~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 53 (274)
T PRK07775 4 FEPHPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDK 53 (274)
T ss_pred CCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 4445444555555 8999999999999999999999998776655443
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.38 Score=41.88 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=29.8
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|..+|..|++.|++|++++++++.++...+.+
T Consensus 10 g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l 44 (254)
T TIGR02415 10 QGIGKGIAERLAKDGFAVAVADLNEETAKETAKEI 44 (254)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 89999999999999999999999987766554433
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.2 Score=44.93 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=25.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
++++|| ..+|++||..|+++++.|++...
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs 188 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHS 188 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcC
Confidence 578888 78999999999999999998763
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.17 Score=48.23 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.2
Q ss_pred CeeeccChhhhccCCcEEEEcCC
Q psy13746 122 LISGTPVLRECLEDAIFIQESVP 144 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavp 144 (294)
++..++|.++|+++||+||.++-
T Consensus 64 kv~~ttd~~eAl~gAdfVi~~~r 86 (442)
T COG1486 64 KVEATTDRREALEGADFVITQIR 86 (442)
T ss_pred EEEEecCHHHHhcCCCEEEEEEe
Confidence 46788999999999999999864
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.47 Score=41.34 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=30.8
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|..++..|++.|++|++.+++++.++...+.+
T Consensus 18 ~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 52 (252)
T PRK07035 18 RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAI 52 (252)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 89999999999999999999999988877665544
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.32 Score=42.72 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=32.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.+++..+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAA 44 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 345455 899999999999999999999999988766544
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.2 Score=45.57 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=23.9
Q ss_pred cceEEE---ccccHHHHHHHHH----CCCeEEEEeC
Q psy13746 14 YPDGII---GLIGQAWAMIFAS----AGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~----~G~~V~~~d~ 42 (294)
++|+|| ..+|+++|..|.+ .|..|++...
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs 195 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHS 195 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeC
Confidence 688888 8999999999887 6778887664
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.069 Score=50.55 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=29.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
.+|+|| |.+|.++|.+|++.|++|+++|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999 9999999999999999999999975
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.43 Score=41.56 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=26.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
++.+| |.+|+.+|..|++.|++|++++++.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~ 36 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPD 36 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence 45555 8999999999999999999999864
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.37 Score=42.51 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=27.9
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
.|+++| | -+|+++|..|++.|++|.+.+++++.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~ 48 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA 48 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh
Confidence 367777 3 49999999999999999999998654
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.31 Score=44.25 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=29.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~ 49 (294)
+++.|+ |-.+++++..++..|. +|++++|+++..++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~k 163 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDK 163 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHH
Confidence 578888 7779999999999886 89999999653333
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.36 Score=42.77 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=32.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKA 44 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 345555 899999999999999999999999887765443
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.21 Score=44.96 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=31.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~ 50 (294)
+++.|+ |-.+++++..|++.|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 468888 8899999999999997 699999999876554
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.26 Score=44.87 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=23.8
Q ss_pred cceEEE---ccccHHHHHHHHHC----CCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASA----GYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~----G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+. |..|+++.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~h 196 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVH 196 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEec
Confidence 688899 89999999999988 67888753
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.2 Score=45.30 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=24.7
Q ss_pred cceEEE---ccccHHHHHHHHH----CCCeEEEEeC
Q psy13746 14 YPDGII---GLIGQAWAMIFAS----AGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~----~G~~V~~~d~ 42 (294)
++|+|| ..+|+++|..|.+ .|..|+++..
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs 193 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHS 193 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeC
Confidence 688888 8999999999998 6788887773
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.46 Score=43.31 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=26.4
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| +-+|.++|..|++.|++|++.+|+.
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~ 42 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRST 42 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence 56666 5799999999999999999999984
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.22 Score=45.65 Aligned_cols=42 Identities=29% Similarity=0.297 Sum_probs=30.2
Q ss_pred CCccceEEE--c-cccHHHHHHHHHCC---CeEEEEeCChHHHHHHHH
Q psy13746 11 GGFYPDGII--G-LIGQAWAMIFASAG---YKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 11 ~~~~~i~ii--G-~mG~~iA~~~~~~G---~~V~~~d~~~~~~~~~~~ 52 (294)
|+..||+|| | .++...+..+...+ .-|.++|+++++++...+
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~ 48 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAE 48 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHH
Confidence 345799999 5 44456777777765 357788999999776544
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.44 Score=41.79 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=32.8
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+|.|. |.+|..++..|++.|++|++.+++++..+...+.+
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l 45 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQEL 45 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45555 88999999999999999999999988776655443
|
|
| >KOG1200|consensus | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.21 Score=42.62 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=35.1
Q ss_pred CCCccceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 10 QGGFYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 10 ~~~~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++-..+++++ --+|++|++.|+++|++|.+.|++.+..+....
T Consensus 10 ~r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~ 56 (256)
T KOG1200|consen 10 QRLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAG 56 (256)
T ss_pred HHHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHh
Confidence 4555788888 358999999999999999999999887665443
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.48 Score=40.88 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=31.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
+++.|. |.+|+.++..|++.|+.|.+.+++++.++...
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~ 47 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALA 47 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 455555 89999999999999999999999988776543
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.49 Score=41.46 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=26.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.+|..+|..|++.|++|.+++++ +..+++.+
T Consensus 25 ~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~ 56 (258)
T PRK06935 25 TGLGQGYAVALAKAGADIIITTHG-TNWDETRR 56 (258)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHH
Confidence 899999999999999999999998 44444443
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.63 Score=40.56 Aligned_cols=33 Identities=30% Similarity=0.348 Sum_probs=28.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++|.|. |.+|..+|..|++.|++|++.+|+++.
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~ 51 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDV 51 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 345455 899999999999999999999999864
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.4 Score=42.38 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=26.2
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
.|+++| | -+|+++|..|++.|++|++.++++
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~ 44 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE 44 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch
Confidence 367777 3 489999999999999999999884
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.35 Score=47.20 Aligned_cols=40 Identities=28% Similarity=0.179 Sum_probs=33.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
.|+++| |-+|+.+|..|++.|++|++.+++++.+++..+.
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 312 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEA 312 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 356666 8899999999999999999999999887766543
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.2 Score=38.87 Aligned_cols=30 Identities=20% Similarity=0.066 Sum_probs=26.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
++|.|| |.++..=+..|+..|.+|+++...
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 478899 899988888999999999999654
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.34 Score=41.27 Aligned_cols=38 Identities=21% Similarity=0.054 Sum_probs=31.2
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++++.|. |.+|+.++..|++. ++|++.+|+++..+...
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~ 43 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELA 43 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHH
Confidence 3566666 89999999999999 99999999987765443
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.61 Score=41.29 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=33.9
Q ss_pred CccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 12 GFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 12 ~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
.-++|.|. |.+|+.+|..|++.|++|++++++++..+...+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 50 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEE 50 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 33566555 8999999999999999999999998877655443
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.22 Score=46.98 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=28.3
Q ss_pred ccceEEE---ccccHHHHHHHHHC-CCeEEEEeCChHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASA-GYKVSLYDVLSEQ 46 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~-G~~V~~~d~~~~~ 46 (294)
.+||+|+ |..|+.+...|... +++|+.+..+.+.
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~sa 75 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKA 75 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhc
Confidence 3589999 99999999999987 6799988775443
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.63 Score=40.78 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=29.4
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~ 53 (294)
.++.+| |.+|+.+|..|++.|++|.+.++ +.+..+.....
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~ 53 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAE 53 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH
Confidence 444555 89999999999999999988776 44555444433
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.31 Score=44.22 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=27.4
Q ss_pred cChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 127 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 127 ~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
.++.+.++.||+||.|+.-.--++. +++++++++++...
T Consensus 196 ~nl~~~~~~ADIvIsAvGkp~~i~~-------~~vk~gavVIDvGi 234 (293)
T PRK14185 196 KNLKKECLEADIIIAALGQPEFVKA-------DMVKEGAVVIDVGT 234 (293)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCH-------HHcCCCCEEEEecC
Confidence 4566678999999999875433333 34788999887654
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.47 Score=42.15 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=26.1
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
.|+++| | -+|+++|..|++.|++|.+.+++.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~ 42 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 42 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch
Confidence 366667 3 599999999999999999999884
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.52 Score=41.22 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=28.6
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
++.|. |.+|+.+|..|++.|++|.+.+++++..
T Consensus 9 ~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~ 44 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD 44 (258)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH
Confidence 44444 7899999999999999999999998776
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.04 E-value=4.2 Score=37.81 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=32.1
Q ss_pred CccceEEE--ccccHHHHHHHHH-CCCeE-EEEeCChHHHHHHHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AGYKV-SLYDVLSEQIENAKN 52 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G~~V-~~~d~~~~~~~~~~~ 52 (294)
+.-||++| |.||+.|..+.++ .|.+| .+-|++.....++.+
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~ 60 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYD 60 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHH
Confidence 34589999 9999999999887 79875 477888777666544
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.61 Score=40.89 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=31.1
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|+.+|..|++.|++|++.+++++.++...+.+.
T Consensus 17 ~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 52 (259)
T PRK06125 17 KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLR 52 (259)
T ss_pred chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 689999999999999999999999988776655443
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.26 Score=46.33 Aligned_cols=33 Identities=27% Similarity=0.203 Sum_probs=28.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~ 46 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.=.
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve 77 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVD 77 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEc
Confidence 478888 9999999999999996 99999988533
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.21 Score=45.93 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=35.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.++++| |.+|+++|..|++.|++|.+++|+++.+++..+.+.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~ 98 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQ 98 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Confidence 456666 789999999999999999999999999887766554
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.22 Score=45.06 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=29.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~ 48 (294)
.+|.|+ |-+|+.+|..|+.+|. +++++|-|.=...
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~S 65 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELR 65 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchh
Confidence 579999 9999999999999997 8999998754433
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.46 Score=42.39 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=25.5
Q ss_pred ceEEE-c-----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII-G-----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| | -+|.++|..|++.|++|++.++++
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~ 46 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGD 46 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCch
Confidence 56666 4 399999999999999999988874
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.23 Score=46.74 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=28.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 578888 9999999999999998 899999884
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.34 Score=44.06 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=23.5
Q ss_pred cceEEE---ccccHHHHHHHHHC----CCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASA----GYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~----G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.++ +..|+++.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvch 192 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCH 192 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeC
Confidence 688888 89999999999887 67888764
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.37 Score=43.07 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=28.8
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+|.|+ |.+|+.++..|++.|++|++..|+++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 46677 999999999999999999999999865
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.69 Score=40.87 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=25.7
Q ss_pred ceEEE-c-----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII-G-----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| | -+|+++|..|++.|++|++.+++.
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~ 42 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVVD 42 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH
Confidence 66777 6 599999999999999999987764
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.49 Score=41.73 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=25.3
Q ss_pred ceEEE-c-----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII-G-----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| | -+|+++|..|++.|++|++.+++.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~ 43 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGE 43 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcc
Confidence 56666 4 599999999999999999998753
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.58 Score=41.15 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=32.2
Q ss_pred cceEEE---ccccHHHHHHHHHCC-CeEEEEeCChHH-HHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAG-YKVSLYDVLSEQ-IENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G-~~V~~~d~~~~~-~~~~~~~i 54 (294)
++|.|. |.+|+.+|..+++.| ++|++++|+++. ++.+.+.+
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l 54 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQM 54 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHH
Confidence 445455 789999999999985 999999999886 66655544
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.6 Score=41.79 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=28.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++|.|+ |.+|.++|..|++.|++|+++|+++..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~ 40 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFS 40 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCcc
Confidence 567777 789999999999999999999987643
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.73 Score=40.39 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=27.9
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+++.|. |.+|+.+|..|++.|++|++.+++++.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~ 42 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEI 42 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHH
Confidence 445455 899999999999999999999998753
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.81 Score=39.84 Aligned_cols=40 Identities=20% Similarity=0.136 Sum_probs=30.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEE-eCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLY-DVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~-d~~~~~~~~~~~~ 53 (294)
++|.|. |.+|+.+|..|++.|++|.+. .++.+..+...+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~ 50 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIRE 50 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 456555 899999999999999999875 6877666554433
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=92.61 E-value=1.3 Score=40.87 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=30.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~ 48 (294)
++|-|- |.+|+-|...|+.+||.|...-|+++..+
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k 44 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEK 44 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhh
Confidence 456555 99999999999999999999999999844
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.48 Score=42.87 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=35.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i 54 (294)
+++.|+ |-.+++++..|+..|. ++++++|+.++.+++.+..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~ 170 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLF 170 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 678888 9999999999999995 8999999999988766543
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.78 Score=40.08 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=31.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCe-EEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYK-VSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~-V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++ |++++++++......+
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~ 49 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAA 49 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence 456555 78999999999999999 9999999877664433
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.46 Score=42.00 Aligned_cols=29 Identities=21% Similarity=0.128 Sum_probs=24.5
Q ss_pred ceEEE-c-----cccHHHHHHHHHCCCeEEEEeCC
Q psy13746 15 PDGII-G-----LIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 15 ~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
|+++| | -+|.++|..|++.|++|++.++.
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~ 41 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFTYVG 41 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccc
Confidence 56667 6 58999999999999999998654
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.8 Score=39.52 Aligned_cols=31 Identities=32% Similarity=0.268 Sum_probs=26.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
++|.|. |.+|+.++..|++.|++|++.+++.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~ 40 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYRVAIHYHRS 40 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence 455555 8999999999999999999999864
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.56 Score=45.79 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=32.8
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|+++| +.+|.++|..|++.|++|++++++++.+++..+.
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADS 48 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 55566 7799999999999999999999999887765543
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.86 Score=39.48 Aligned_cols=39 Identities=31% Similarity=0.302 Sum_probs=31.1
Q ss_pred eEEE---ccccHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHHH
Q psy13746 16 DGII---GLIGQAWAMIFASAGYKVSLYDVL-SEQIENAKNTI 54 (294)
Q Consensus 16 i~ii---G~mG~~iA~~~~~~G~~V~~~d~~-~~~~~~~~~~i 54 (294)
|.|. |.+|+.+|..|++.|++|++.+++ ++.++...+.+
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 44 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEI 44 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH
Confidence 4455 889999999999999999999998 66666554443
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.75 Score=40.43 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=26.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEe-CChHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYD-VLSEQIENAKNT 53 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d-~~~~~~~~~~~~ 53 (294)
+.+|+.+|..|++.|++|++.. ++++.++...+.
T Consensus 18 ~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~ 52 (260)
T PRK08416 18 RGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAED 52 (260)
T ss_pred chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 8899999999999999998875 466666554443
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.84 Score=39.99 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=27.2
Q ss_pred ccccHHHHHHHHHCCCeEEEEe-CChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYD-VLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d-~~~~~~~~~~~~i 54 (294)
|.+|..+|..|++.|++|.+.+ ++.+..+...+.+
T Consensus 12 ~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~ 47 (256)
T PRK12743 12 SGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEV 47 (256)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHH
Confidence 7899999999999999998875 4555555554443
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.43 Score=36.16 Aligned_cols=32 Identities=19% Similarity=0.095 Sum_probs=28.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
-++|.|| |.+|..=+..|++.|.+|+++..+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3688888 9999999999999999999999986
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.85 Score=39.90 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=24.3
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
|.+|+.+|..|++.|++|+++++++.
T Consensus 18 ~gIG~~la~~l~~~G~~v~~~~r~~~ 43 (260)
T PRK12823 18 QGIGRGVALRAAAEGARVVLVDRSEL 43 (260)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCchH
Confidence 89999999999999999999999863
|
|
| >KOG0725|consensus | Back alignment and domain information |
|---|
Probab=92.38 E-value=1.2 Score=39.92 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=37.4
Q ss_pred ccceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 13 FYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 13 ~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
..||++| --+|+++|..|++.|.+|++.+|+++.++.....+.
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~ 53 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELG 53 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3689999 568999999999999999999999999888776554
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.79 Score=39.97 Aligned_cols=31 Identities=29% Similarity=0.244 Sum_probs=28.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 579999 9999999999999997 899999775
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.48 Score=41.89 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=29.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~ 47 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.=..
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 69 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSL 69 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECc
Confidence 478899 9999999999999997 899999875443
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.36 Score=49.30 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=27.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~ 46 (294)
.+|+|+ | +|+.+|..|+.+|. +++++|.|.=.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve 143 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLE 143 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEc
Confidence 479999 9 89999999999994 89999987533
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.84 Score=40.03 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=43.6
Q ss_pred ccccHHHHHHHHH----CCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHH
Q psy13746 20 GLIGQAWAMIFAS----AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAK 94 (294)
Q Consensus 20 G~mG~~iA~~~~~----~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~ 94 (294)
+.+|..+|..|++ .|++|++.+|+++.++...+.+... .....+.++.+|+.+ +.++...
T Consensus 10 ~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~---------------~~~~~v~~~~~Dl~~~~~v~~~~ 74 (256)
T TIGR01500 10 RGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAE---------------RSGLRVVRVSLDLGAEAGLEQLL 74 (256)
T ss_pred CchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhc---------------CCCceEEEEEeccCCHHHHHHHH
Confidence 7899999999997 7999999999999888776655310 001234555667776 4455555
Q ss_pred HHHH
Q psy13746 95 NTIQ 98 (294)
Q Consensus 95 ~~~~ 98 (294)
+.+.
T Consensus 75 ~~~~ 78 (256)
T TIGR01500 75 KALR 78 (256)
T ss_pred HHHH
Confidence 4443
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.6 Score=41.15 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=25.8
Q ss_pred ceEEE-c-----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII-G-----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| | -+|..+|..|++.|++|++.+++.
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 56666 5 699999999999999999999874
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=2.3 Score=41.02 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=29.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
.++|+|+ |.-|.++|..|++.|++|+++|.++.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 3689999 99999999999999999999998764
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=92.22 E-value=1 Score=36.34 Aligned_cols=35 Identities=29% Similarity=0.223 Sum_probs=27.4
Q ss_pred ccccHHHHHHHHHCC-CeEEEEeCC--hHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAG-YKVSLYDVL--SEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G-~~V~~~d~~--~~~~~~~~~~i 54 (294)
+.+|+.+|.+|++.| ..|.++.++ .+..+.....+
T Consensus 10 ~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l 47 (167)
T PF00106_consen 10 SGIGRALARALARRGARVVILTSRSEDSEGAQELIQEL 47 (167)
T ss_dssp SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCceEEEEeeecccccccccccccc
Confidence 899999999999994 588999999 55555554433
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.53 Score=41.50 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=26.2
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
.|+++| | -+|+.+|..|++.|++|.+.+++.+
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~ 43 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDE 43 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcc
Confidence 366777 5 5999999999999999998876543
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.74 Score=46.32 Aligned_cols=35 Identities=31% Similarity=0.273 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+.+
T Consensus 381 ~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 415 (657)
T PRK07201 381 SGIGRATAIKVAEAGATVFLVARNGEALDELVAEI 415 (657)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 78999999999999999999999998877765544
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.47 Score=41.84 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=29.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~ 47 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.=..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 478888 9999999999999996 899999876443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.1 Score=38.76 Aligned_cols=42 Identities=29% Similarity=0.250 Sum_probs=34.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
+++.|. |.+|..+|..+++.|++|++.++++++++...+.+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~ 50 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECG 50 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 355555 899999999999999999999999988776665543
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.98 Score=38.79 Aligned_cols=34 Identities=24% Similarity=0.052 Sum_probs=27.6
Q ss_pred CccceEEE---ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 12 GFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 12 ~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
..++|.|+ |.+|+.++..|++.|++|++..++..
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~ 41 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDE 41 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCH
Confidence 34577777 99999999999999999888665544
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.97 E-value=1.8 Score=39.94 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=29.6
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
.++|.|. |.+|+.++..|++.|++|++.+|+.+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD 46 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence 3567777 899999999999999999999998764
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.96 E-value=1.4 Score=40.26 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=26.1
Q ss_pred ccceEEE--ccccHHHHHHHHH-CCCeE-EEEeCChHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFAS-AGYKV-SLYDVLSEQ 46 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~-~G~~V-~~~d~~~~~ 46 (294)
-.||+|| |.+|+..+..+.+ .+.++ .++|++++.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es 41 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPES 41 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhh
Confidence 3589999 9999997777775 45564 489999875
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.75 Score=39.61 Aligned_cols=65 Identities=20% Similarity=0.149 Sum_probs=47.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
..|.|- --+|..+|..|...|.+|++.-|+++++++++.... +.-..++|+.| +.
T Consensus 6 nTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p---------------------~~~t~v~Dv~d~~~ 64 (245)
T COG3967 6 NTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENP---------------------EIHTEVCDVADRDS 64 (245)
T ss_pred cEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCc---------------------chheeeecccchhh
Confidence 345444 357889999999999999999999999998876432 34456788888 55
Q ss_pred HHHHHHHHHH
Q psy13746 90 IENAKNTIQH 99 (294)
Q Consensus 90 ~~~~~~~~~~ 99 (294)
+++..+.+.+
T Consensus 65 ~~~lvewLkk 74 (245)
T COG3967 65 RRELVEWLKK 74 (245)
T ss_pred HHHHHHHHHh
Confidence 6555555443
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.19 Score=44.00 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=33.1
Q ss_pred CCCCCccceEEE-----ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 8 PAQGGFYPDGII-----GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 8 ~~~~~~~~i~ii-----G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|++..+.+|-+| |.||+.+|..|++.|++|+++++..
T Consensus 9 ~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~ 50 (229)
T PRK06732 9 GTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKT 50 (229)
T ss_pred CcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECcc
Confidence 667788889888 9999999999999999999998764
|
|
| >KOG1205|consensus | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.63 Score=42.03 Aligned_cols=73 Identities=22% Similarity=0.165 Sum_probs=53.2
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.||++| .-+|.++|..++++|.++.+..+..+++++..+.++..+ ++. -+-++-+|+++ +
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~-----------~~~----~v~~~~~Dvs~~~ 76 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLG-----------SLE----KVLVLQLDVSDEE 76 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhC-----------CcC----ccEEEeCccCCHH
Confidence 588888 568999999999999999999999999998866554211 111 46677788888 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
+...+.+.+.++|
T Consensus 77 ~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 77 SVKKFVEWAIRHF 89 (282)
T ss_pred HHHHHHHHHHHhc
Confidence 5555555544444
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.86 Score=39.91 Aligned_cols=30 Identities=30% Similarity=0.251 Sum_probs=26.2
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| |.+|+.+|..|++.|++|++++++.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 55566 8999999999999999999999864
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.87 E-value=1 Score=34.95 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 22 mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+|...++.+...|.+|++.|+++++++.+++
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHh
Confidence 4666666677789999999999999887654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.4 Score=44.50 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=30.5
Q ss_pred cceEEE---ccccHHHHHHHHHC-C-CeEEEEeCChHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASA-G-YKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~-G-~~V~~~d~~~~~~~~~ 50 (294)
++|.|+ |.||+.+|++|+.. | .++++++|+++++...
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L 197 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL 197 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence 578888 89999999999864 5 5999999998776554
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=1 Score=40.01 Aligned_cols=32 Identities=25% Similarity=0.087 Sum_probs=27.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
+++.|. |.+|+.+|..|++.|++|++.+++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAE 41 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence 344444 89999999999999999999999865
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.62 Score=43.32 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=22.8
Q ss_pred cceEEE---ccccHHHHHHHHHC-CCeEEE-Ee
Q psy13746 14 YPDGII---GLIGQAWAMIFASA-GYKVSL-YD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~-G~~V~~-~d 41 (294)
.||+|+ |.+|+.++..+... ++++.. .+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~ 35 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS 35 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence 699999 89999999999875 677654 55
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.86 Score=39.32 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=27.6
Q ss_pred ccccHHHHHHHHHCCCeEEE-EeCChHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSL-YDVLSEQIENAKNT 53 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~-~d~~~~~~~~~~~~ 53 (294)
|.+|+.++..|++.|++|++ +.++++..++....
T Consensus 11 g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~ 45 (247)
T PRK09730 11 RGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNL 45 (247)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHH
Confidence 79999999999999999986 57887766655443
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.3 Score=39.04 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=28.6
Q ss_pred ceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIE 48 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~ 48 (294)
||.|+ |.+|..++..|+..|. +++++|.|.=...
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~s 37 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVS 37 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcch
Confidence 57788 9999999999999997 8999998754433
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.87 Score=40.86 Aligned_cols=30 Identities=37% Similarity=0.480 Sum_probs=26.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
++.+| +-+|+.+|..|++.|++|++.+++.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~ 40 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGV 40 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCc
Confidence 55566 7899999999999999999999876
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=91.68 E-value=1 Score=34.27 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=32.7
Q ss_pred eeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 123 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 123 i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
+...+++.++++++|.||.+++=+ +.+.--+.++...+....+|++...
T Consensus 54 ~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 54 VEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp EEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSEEEEESSS
T ss_pred eEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCCEEEECcc
Confidence 466778888999999999998643 2333234556666667777776543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.49 Score=44.41 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=29.9
Q ss_pred cceEEE---ccccHHHHHHHHHC-CCeEEEEeCChHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASA-GYKVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~-G~~V~~~d~~~~~~~ 48 (294)
++|.|. |.+|+.++..|++. |++|+++|++.+...
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~ 53 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIK 53 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhh
Confidence 578888 99999999999998 599999999876543
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.92 Score=39.50 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=31.7
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+|.|. |.+|+.++..|++.|++|++.+++++..+...+
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRA 44 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45555 899999999999999999999999877665544
|
|
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.2 Score=35.55 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcccccc------cHHHHHHHHHHHHHHHHHHcCCCCHHHH------------HHHHHc
Q psy13746 213 SERVITRTREIMTEIGMKPVTLTTEIRG------FALNRIQFAVLNECYHLVHDGVLSAKDI------------DRVMSE 274 (294)
Q Consensus 213 ~~e~~~~~~~ll~~lG~~~v~v~~~~~g------~v~nri~~a~~~Ea~~l~~~~~~~~~~i------------d~a~~~ 274 (294)
+++..+.++.+++.+|.+++.+..+... -++++....++..+..++++.+++.++. +.+...
T Consensus 9 d~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PLi~~t~~n~~~~ 88 (132)
T PF10728_consen 9 DEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPLIRETLENILQL 88 (132)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999543322 2567788888899999999999998552 223332
Q ss_pred ccCCCcCCCChhhhhcc
Q psy13746 275 GLGLRYAFLGPLETIHL 291 (294)
Q Consensus 275 g~g~~~~~~Gp~~~~D~ 291 (294)
| -.-+..||....|.
T Consensus 89 g--~~~alTGP~~RgD~ 103 (132)
T PF10728_consen 89 G--PADALTGPAARGDI 103 (132)
T ss_dssp ---HHHH--SCCHCTHH
T ss_pred C--chhccCCCcccCCH
Confidence 2 11235799888774
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.34 Score=45.35 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=28.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478888 9999999999999997 899999885
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.6 Score=38.04 Aligned_cols=40 Identities=25% Similarity=0.206 Sum_probs=30.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEe-CChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYD-VLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d-~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|.+.+ ++++.++.....+
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~ 49 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI 49 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHH
Confidence 45555 8999999999999999999875 5666665544433
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=1.3 Score=38.25 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=25.4
Q ss_pred ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKN 52 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~ 52 (294)
|.+|+.+|..|++.|+.|.+.++ +++..+...+
T Consensus 12 ~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~ 45 (248)
T PRK06123 12 RGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQ 45 (248)
T ss_pred chHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHH
Confidence 78999999999999999988774 4555444433
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=2.4 Score=41.03 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=29.6
Q ss_pred CCC--CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 7 FPA--QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 7 ~~~--~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
||- +.+-++|.|| |.++..=+..|+++|.+|+++...
T Consensus 4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~ 44 (457)
T PRK10637 4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALA 44 (457)
T ss_pred eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 454 3445789999 889988889999999999998543
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.83 Score=42.56 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=24.6
Q ss_pred cceEEE---ccccHHHHHHHHHC-CCeEE-EEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASA-GYKVS-LYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~-G~~V~-~~d~~~ 44 (294)
+||+|+ |.+|..+.+.|.+. ++++. +++...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~ 36 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE 36 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch
Confidence 379999 89999999999976 66777 556554
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 294 | ||||
| 3f3s_A | 313 | The Crystal Structure Of Human Lambda-Crystallin, C | 5e-53 | ||
| 3ado_A | 319 | Crystal Structure Of The Rabbit L-Gulonate 3-Dehydr | 3e-51 | ||
| 1zej_A | 293 | Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog | 5e-12 | ||
| 4dyd_A | 283 | Substrate-Directed Dual Catalysis Of Dicarbonyl Com | 6e-12 | ||
| 3hdh_A | 302 | Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge | 4e-10 | ||
| 1f12_A | 310 | L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- | 6e-10 | ||
| 1lso_A | 302 | Crystal Structure Of The S137a Mutant Of L-3-Hydrox | 1e-09 | ||
| 1f0y_A | 302 | L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac | 1e-09 | ||
| 1m76_A | 302 | Crystal Structure Of The S137c Mutant Of L-3-Hydrox | 2e-09 | ||
| 1lsj_A | 302 | Crystal Structure Of The E110q Mutant Of L-3-hydrox | 2e-09 | ||
| 1il0_A | 302 | X-Ray Crystal Structure Of The E170q Mutant Of Huma | 2e-09 | ||
| 1m75_A | 302 | Crystal Structure Of The N208s Mutant Of L-3-Hydrox | 5e-09 | ||
| 3had_A | 308 | Biochemical Characterization And Structure Determin | 1e-08 | ||
| 3rqs_A | 324 | Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh | 4e-08 | ||
| 2wtb_A | 725 | Arabidopsis Thaliana Multifuctional Protein, Mfp2 L | 2e-07 | ||
| 2hdh_A | 293 | Biochemical Characterization And Structure Determin | 7e-07 | ||
| 3mog_A | 483 | Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge | 5e-06 | ||
| 1zcj_A | 463 | Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas | 4e-05 | ||
| 2x58_A | 727 | The Crystal Structure Of Mfe1 Liganded With Coa Len | 5e-05 | ||
| 3zwb_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 5e-05 | ||
| 3zw8_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 6e-05 | ||
| 1wdk_A | 715 | Fatty Acid Beta-Oxidation Multienzyme Complex From | 3e-04 |
| >pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313 | Back alignment and structure |
|
| >pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase Length = 319 | Back alignment and structure |
|
| >pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293 | Back alignment and structure |
|
| >pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283 | Back alignment and structure |
|
| >pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302 | Back alignment and structure |
|
| >pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310 | Back alignment and structure |
|
| >pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302 | Back alignment and structure |
|
| >pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302 | Back alignment and structure |
|
| >pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302 | Back alignment and structure |
|
| >pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302 | Back alignment and structure |
|
| >pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302 | Back alignment and structure |
|
| >pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302 | Back alignment and structure |
|
| >pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308 | Back alignment and structure |
|
| >pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324 | Back alignment and structure |
|
| >pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725 | Back alignment and structure |
|
| >pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293 | Back alignment and structure |
|
| >pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483 | Back alignment and structure |
|
| >pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463 | Back alignment and structure |
|
| >pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727 | Back alignment and structure |
|
| >pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742 | Back alignment and structure |
|
| >pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742 | Back alignment and structure |
|
| >pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 1e-39
Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ----FGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + + +E I+ +
Sbjct: 35 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQF 189
+ + E++ E L++K+++++ +D F + +TI +S+TSS + ++ +T + +F
Sbjct: 95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRF 154
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 155 AGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVS-CKDTPGFIVNRLLVP 213
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 214 YLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFE 248
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-39
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 12/217 (5%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ---FGLISGTPVLR 130
A G++V LYD+ +E + A + I L +G L+ E + +
Sbjct: 25 ASHGHQVLLYDISAEALTRAIDGIHARLN----SRVTRGKLTAETCERTLKRLIPVTDIH 80
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
L A + E+ E L++K ++ + T+L+++TSS + ++ + +
Sbjct: 81 A-LAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVA 139
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H NP + LVE+V T+ V+ + E+ G +PV GF +NR+
Sbjct: 140 GLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVR-CHSTPGFIVNRVARPY 198
Query: 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
+E + + + V + + ID + +G G +GPLE
Sbjct: 199 YSEAWRALEEQVAAPEVIDAALRDGAGFP---MGPLE 232
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 1e-16
Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 10/144 (6%)
Query: 144 PEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL 203
+V + D + +L T L+ I +
Sbjct: 298 VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKM------AGKV 351
Query: 204 VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVL 263
V I AA + + + + G K V + G + R ++NE + GV
Sbjct: 352 VTIAAAAVNPDSATRKAIYYLQQQG-KTVLQIADYPGMLIWRTVAMIINEALDALQKGVA 410
Query: 264 SAKDIDRVMSEGLGLRYAFLGPLE 287
S +DID M G+ GPL
Sbjct: 411 SEQDIDTAMRLGVNYP---YGPLA 431
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 3e-38
Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 25/215 (11%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
+ ++V L DV + +E A+ I L I T L E +
Sbjct: 31 IASKHEVVLQDVSEKALEAAREQIPEEL------------------LSKIEFTTTL-EKV 71
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAH 193
+D + E+V E L K +V R ++ N L S+TS ++E S+F+ H
Sbjct: 72 KDCDIVMEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVDDIAERLDSPSRFLGVH 129
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
+NPP+ +PLVEIV + +T + + + E+G + V +NR AVL+E
Sbjct: 130 WMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCK---GQSLVNRFNAAVLSE 186
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLET 288
++ +GV A+D+DRV LGL Y GPL
Sbjct: 187 ASRMIEEGV-RAEDVDRVWKHHLGLLYTLFGPLGN 220
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 8e-29
Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 16/218 (7%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---QFGLISGTPVLR 130
+ Y V L +V + +E ++ LQ KGS+S E+ L+ G+
Sbjct: 332 ILSNYPVILKEVNEKFLEAGIGRVKANLQ----SRVRKGSMSQEKFEKTMSLLKGSLDYE 387
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQF 189
D + E+V E + +K Q++ ++ + + IL+S+TS+ + + + E + + +
Sbjct: 388 S-FRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST-IDLNKIGERTKSQDRI 445
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
+ AH +P + +PL+EIV TS +VI ++ +I PV + GFA+NR+ F
Sbjct: 446 VGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPV-VVGNCTGFAVNRMFFP 504
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
LV G IDR + G+ +GP
Sbjct: 505 YTQAAMFLVECGA-DPYLIDRAI-SKFGMP---MGPFR 537
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-28
Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 20/219 (9%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE-QFGLISGTPVLREC 132
A G V + +Q++ AK I TL+ K + + + + + +E
Sbjct: 336 ARVGISVVAVESDPKQLDAAKKIITFTLE----KEASRAHQNGQASAKPKLRFSSSTKE- 390
Query: 133 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIV 191
L + E+V E + +K +V+ + L ++TS+ L ++ + I
Sbjct: 391 LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA-LNVDDIASSTDRPQLVIG 449
Query: 192 AH---PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248
H P + + L+E++P+ ++S I + +IG V + GF NR+
Sbjct: 450 THFFSPAH---VMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV-VVGNCYGFVGNRMLA 505
Query: 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
N+ + L+ +G +D+D V+ E G + +GP
Sbjct: 506 PYYNQGFFLLEEGS-KPEDVDGVL-EEFGFK---MGPFR 539
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-28
Identities = 45/215 (20%), Positives = 91/215 (42%), Gaps = 12/215 (5%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ-FGLISGTPVLREC 132
A G V + +Q++ AK I TL+ K + + + + + +E
Sbjct: 57 ARVGISVVAVESDPKQLDAAKKIITFTLE----KEASRAHQNGQASAKPKLRFSSSTKE- 111
Query: 133 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 192
L + E+V E + +K +V+ + L ++TS+ ++ + I
Sbjct: 112 LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGT 171
Query: 193 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLN 252
H +P + + L+E++P+ ++S I + +IG V + GF NR+ N
Sbjct: 172 HFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV-VVGNCYGFVGNRMLAPYYN 230
Query: 253 ECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
+ + L+ +G +D+D V+ E G + +GP
Sbjct: 231 QGFFLLEEGS-KPEDVDGVL-EEFGFK---MGPFR 260
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 5e-28
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 18/208 (8%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---QFGLISGTPVLR 130
A G + + D+ IE L KG ++P + I T
Sbjct: 334 ASKGTPILMKDINEHGIEQGLAEAAKLLV----GRVDKGRMTPAKMAEVLNGIRPTLSYG 389
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQF 189
+ + + E+V E ++K V ++ + + IL+S+TS+ + S+L++ F
Sbjct: 390 D-FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST-ISISLLAKALKRPENF 447
Query: 190 IVAH---PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 246
+ H PV+ +PLVE++ +S+ + T ++G P+ + + GF +NR+
Sbjct: 448 VGMHFFNPVH---MMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPI-VVNDCPGFLVNRV 503
Query: 247 QFAVLNECYHLVHDGVLSAKDIDRVMSE 274
F LV GV ID+VM +
Sbjct: 504 LFPYFGGFAKLVSAGV-DFVRIDKVMEK 530
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 4e-24
Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 14/205 (6%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---QFGLISGTPVLR 130
AG + L ++ + + + L+ + + T
Sbjct: 74 GLAGIETFLVVRNEQRCKQELEVMY-------AREKSFKRLNDKRIEKINANLKITSDFH 126
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQF 189
+ L + I ESV E +++K +++ ++ S I ++TSS L + +S S
Sbjct: 127 K-LSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSS-LDLNEISSVLRDPSNL 184
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
+ H NP I LVEI+ + TS + I + I PV L + F NR+
Sbjct: 185 VGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPV-LVGNCKSFVFNRLLHV 243
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSE 274
++ L+++ ID++++
Sbjct: 244 YFDQSQKLMYEYGYLPHQIDKIITN 268
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-06
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 230 KPVTLTTEIRGFALN--RIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
+P + +N F +NE LV GV + +DID + LGL GP E
Sbjct: 6 RPQI-DSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIK--LGLNRP-FGPFE 61
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 294 | |||
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 100.0 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 100.0 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 100.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 100.0 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 100.0 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 100.0 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 100.0 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 100.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 100.0 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.9 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.86 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.85 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.85 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.85 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.85 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.84 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.84 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.84 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.83 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.83 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.82 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.8 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.79 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.78 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.77 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.75 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.74 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.74 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.73 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.73 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.73 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 99.72 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.72 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.72 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.71 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.71 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.71 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.7 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.7 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.7 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.69 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.69 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.68 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.68 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.68 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.68 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.67 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.67 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.66 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.66 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.66 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.66 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.65 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.64 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.64 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.63 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.62 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.6 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.6 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.59 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.59 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.57 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.57 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.57 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.55 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.54 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.52 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.47 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.47 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.46 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.45 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.41 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.41 | |
| 3ctv_A | 110 | HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura | 99.4 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.35 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.33 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.26 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.24 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.23 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.22 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 99.17 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.16 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.1 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.09 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 99.08 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.62 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 99.04 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.0 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.93 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 98.89 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.83 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 98.81 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.79 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.78 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.77 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.77 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.76 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.75 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.74 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.73 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.73 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.72 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.69 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.67 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.67 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.62 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.58 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.57 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.57 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.53 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.52 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.52 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.5 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.49 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.49 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.49 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.49 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.49 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.48 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.47 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.47 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.46 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.45 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.44 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.43 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.43 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.4 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.36 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.36 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.35 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.35 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.35 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.35 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.35 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.34 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.32 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.32 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.31 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.31 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.29 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.26 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.26 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.25 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.24 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.23 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.22 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.2 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.15 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.11 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.09 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.06 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.04 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.03 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.01 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.0 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.0 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.0 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.99 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.98 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.97 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 97.95 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.95 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.94 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.93 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.91 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 97.89 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.86 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.84 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.83 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.82 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 97.8 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.79 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.79 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.77 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.68 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.65 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.63 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.6 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 97.6 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.58 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.56 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.56 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.54 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 97.54 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.54 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.53 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.51 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.51 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.5 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.49 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.48 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 97.48 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 97.47 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.44 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.43 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.43 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.43 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.41 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.4 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.37 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.37 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 97.36 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.36 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.33 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.33 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.31 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.29 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.29 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.29 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.26 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.25 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.24 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.22 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.19 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.18 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.18 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.12 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.11 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.08 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 97.07 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.05 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.05 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 97.05 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.04 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.04 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.01 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 96.97 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 96.96 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.96 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.93 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 96.92 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.88 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.87 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 96.87 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.84 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 96.82 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 96.82 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 96.82 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.81 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 96.81 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.8 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 96.8 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 96.78 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 96.77 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 96.77 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.77 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.76 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.73 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.73 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.72 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.69 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 96.69 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 96.68 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 96.67 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.67 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.66 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.65 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.65 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.65 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.63 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.61 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.61 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 96.6 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.6 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.59 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 96.59 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 96.58 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 96.56 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 96.56 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.53 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 96.53 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 96.53 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 96.52 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 96.52 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 96.5 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 96.5 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.47 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.46 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 96.46 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.45 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 96.43 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 96.42 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 96.41 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 96.39 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.38 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 96.38 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.37 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 96.36 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.36 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.36 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 96.36 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 96.35 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 96.35 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.35 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 96.34 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 96.34 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 96.33 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.33 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.32 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 96.32 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 96.31 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 96.3 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 96.29 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.28 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.28 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.28 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 96.28 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 96.26 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 96.24 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 96.24 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 96.24 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 96.23 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.22 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.21 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 96.21 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 96.2 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 96.2 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 96.19 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.19 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.19 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 96.18 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 96.18 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 96.18 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 96.17 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 96.15 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 96.15 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 96.15 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 96.14 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.14 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 96.13 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 96.13 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 96.12 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 96.12 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 96.12 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.11 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 96.11 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 96.1 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.1 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 96.08 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 96.08 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 96.07 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.06 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 96.06 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 96.05 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 96.04 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 96.02 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 96.02 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 96.02 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 96.01 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 96.0 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.0 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.0 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 95.99 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 95.99 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.98 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 95.97 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 95.96 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 95.95 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 95.94 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 95.94 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 95.94 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 95.93 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.93 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 95.93 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 95.92 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 95.92 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.91 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 95.9 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 95.9 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 95.89 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.89 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 95.87 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 95.87 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 95.86 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 95.85 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 95.85 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.84 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 95.83 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 95.83 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 95.83 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 95.81 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 95.81 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 95.79 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 95.79 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 95.78 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 95.78 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 95.78 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 95.78 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 95.77 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 95.76 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 95.75 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 95.75 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 95.75 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.74 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 95.71 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 95.7 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 95.69 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 95.69 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 95.69 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 95.69 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 95.68 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.67 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 95.67 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.66 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 95.66 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 95.65 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 95.65 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 95.65 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 95.62 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.61 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 95.61 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 95.61 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 95.58 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 95.56 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 95.55 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 95.54 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 95.54 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.54 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 95.53 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 95.53 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 95.53 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 95.51 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 95.49 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 95.49 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 95.47 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.44 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.43 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 95.41 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 95.41 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 95.39 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.37 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 95.36 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 95.36 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.36 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 95.35 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 95.32 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 95.3 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.29 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 95.29 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.27 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 95.26 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 95.23 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 95.21 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 95.2 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 95.18 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 95.17 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 95.15 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 95.12 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 95.08 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 95.08 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 95.07 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 95.07 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 95.05 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 95.05 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 95.04 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.04 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 95.04 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 95.03 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 95.0 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 94.98 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 94.94 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 94.91 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 94.91 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 94.89 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 94.89 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 94.85 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 94.84 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 94.82 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 94.82 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 94.8 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 94.78 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 94.77 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 94.77 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 94.74 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 94.72 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.72 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 94.71 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 94.66 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 94.66 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.65 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 94.64 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 94.62 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 94.62 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 94.58 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 94.52 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 94.52 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 94.49 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 94.49 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 94.48 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 94.45 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.45 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 94.42 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 94.38 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 94.3 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 94.29 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 94.29 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 94.27 |
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-55 Score=396.79 Aligned_cols=238 Identities=49% Similarity=0.831 Sum_probs=225.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||++||..++.+|++|++||++++.++++.+++.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~----------------------------------- 50 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIR----------------------------------- 50 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHH-----------------------------------
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHH-----------------------------------
Confidence 5799999 999999999999999999999999999988877665
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+.+.++.++|.+++..+.+..+++++.++|+.+++++||+||||+||++++|+++|++|++++++++||+||
T Consensus 51 --------~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSN 122 (319)
T 3ado_A 51 --------KEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSS 122 (319)
T ss_dssp --------HHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEEC
T ss_pred --------HHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehh
Confidence 567777888887776667778899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHH
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~ 250 (294)
||+++++++++.+.+|+||+|+|||||++..+++||++|+.|++++++++..|++.+|++|+++.+|.|||++||++.++
T Consensus 123 TSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~ 202 (319)
T 3ado_A 123 SSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAI 202 (319)
T ss_dssp CSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHH
T ss_pred hhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887899999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 251 ~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++||++++++|+++++|||.+++.|+|++|+.+|||+++|++|
T Consensus 203 ~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~G 245 (319)
T 3ado_A 203 ISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNA 245 (319)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhcC
Confidence 9999999999999999999999999999999999999999987
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=343.36 Aligned_cols=232 Identities=22% Similarity=0.294 Sum_probs=206.4
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.+.+++|+|| |.||++||..++++|++|++||++++ ++.+.+.
T Consensus 51 ~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~-------------------------------- 95 (460)
T 3k6j_A 51 AYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELE-------------------------------- 95 (460)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHH--------------------------------
T ss_pred cccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHH--------------------------------
Confidence 3567899999 99999999999999999999999998 3333332
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+.+++++++|.++.. ..+..++++++++|++ ++++||+||+|+||++++|+++|+++.+.+++++||
T Consensus 96 -----------~~l~~~~~~G~l~~~-~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIl 162 (460)
T 3k6j_A 96 -----------VMYAREKSFKRLNDK-RIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIF 162 (460)
T ss_dssp -----------HHHHHHHHTTSCCHH-HHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEE
T ss_pred -----------HHHHHHHHcCCCCHH-HHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEE
Confidence 345555666643210 1134678899999996 799999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHH
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~ 247 (294)
+||||+++++++++.+.+|.+|+|+|||+|++.++++||+++..|++++++.++++++.+|++++++ +|.+||++||++
T Consensus 163 asnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v-~d~pGfi~Nril 241 (460)
T 3k6j_A 163 GTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLV-GNCKSFVFNRLL 241 (460)
T ss_dssp EECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEE-SSCCHHHHHHHH
T ss_pred EecCCChhHHHHHHhccCCcceEEEEecchhhhCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEE-ecccHHHHHHHH
Confidence 9999999999999999899999999999999999999999999999999999999999999999999 589999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 248 FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 248 ~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
.++++||+.++++.|+++++||++++ ++|+| +|||+++|++|.
T Consensus 242 ~~~~~EA~~l~~~~Ga~~e~ID~a~~-~~G~p---mGPf~l~D~vGl 284 (460)
T 3k6j_A 242 HVYFDQSQKLMYEYGYLPHQIDKIIT-NFGFL---MGPMTVADMNGF 284 (460)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHH-HHTBS---SCHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH-HcCCC---cCHHHHHHHhch
Confidence 99999999999777799999999998 79998 999999999983
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=359.34 Aligned_cols=231 Identities=21% Similarity=0.362 Sum_probs=208.7
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.+.+++|+|| |.||++||.+++.+|++|+++|++++.++++.+.+.+
T Consensus 313 ~~~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~------------------------------- 361 (742)
T 3zwc_A 313 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITF------------------------------- 361 (742)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH-------------------------------
T ss_pred cccccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHH-------------------------------
Confidence 4678999999 9999999999999999999999999999988877652
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.+++.+.++..+. ......+++++++++ ++++||+||||+||++++|+++|+++++++++++||
T Consensus 362 ------------~l~~~~~~~~~~~---~~~~~~~~~~~~~~~-~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIl 425 (742)
T 3zwc_A 362 ------------TLEKEASRAHQNG---QASAKPKLRFSSSTK-ELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFL 425 (742)
T ss_dssp ------------HHHHHHHHHHTTT---CCCCCCCEEEESCGG-GGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEE
T ss_pred ------------HHHHHHHhccccc---hhhhhhhhcccCcHH-HHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceE
Confidence 2333333332221 123456788889987 589999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHH
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~ 247 (294)
+||||++++++|++.+.+|+||+|+|||||++.++++||++++.|++++++.+..+.+.+|+.|+++ +|.|||++||++
T Consensus 426 ASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~v-kd~pGFi~NRi~ 504 (742)
T 3zwc_A 426 CTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVV-GNCYGFVGNRML 504 (742)
T ss_dssp EECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEC-CCSTTTTHHHHH
T ss_pred EecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCccc-CCCCCccHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 699999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 248 FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 248 ~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
.++++|+++++++| ++++++|.+++ ++|+| +|||+++|.+|
T Consensus 505 ~~~~~ea~~l~~eG-~~~~~id~a~~-~~G~p---mGPf~l~D~vG 545 (742)
T 3zwc_A 505 APYYNQGFFLLEEG-SKPEDVDGVLE-EFGFK---MGPFRVSDLAG 545 (742)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHH-HHTCS---SCHHHHHHHHC
T ss_pred hHHHHHHHHHHHcC-CCHHHHHHHHH-HcCCC---CChHHHHHHhC
Confidence 99999999999997 69999999998 59998 99999999988
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-43 Score=315.12 Aligned_cols=236 Identities=25% Similarity=0.424 Sum_probs=209.8
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||++||..++++|++|++||++++.++++.+.+.+.
T Consensus 2 m~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~------------------------------- 50 (283)
T 4e12_A 2 TGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGL------------------------------- 50 (283)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHH-------------------------------
Confidence 457899999 99999999999999999999999999999887776533
Q ss_pred HHHHHHHHHHHHHHHHHhcc-ccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKG-CLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+.+++++| ..+.. ..+....+++.++++.+++++||+||+|+|++.+.|+.+++++.+.+++++|+
T Consensus 51 ------------~~~~~~~g~~~~~~-~~~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il 117 (283)
T 4e12_A 51 ------------AAVYEKEVAGAADG-AAQKALGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIF 117 (283)
T ss_dssp ------------HHHHHHHSTTCTTT-HHHHHHHHCEEESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEE
T ss_pred ------------HHHHHHhcccCCHH-HHHHHHcCeEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEE
Confidence 33333333 11110 11233456778899988899999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHH
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~ 247 (294)
+||+|+++++++++.+.++.+++|+||++|+..+++++++++..+++++++.++++++.+|+++++++++.|||++||++
T Consensus 118 ~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~ 197 (283)
T 4e12_A 118 ATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLL 197 (283)
T ss_dssp EECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHH
T ss_pred EECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHH
Confidence 99999999999998888899999999999999999999999999999999999999999999999997799999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 248 FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 248 ~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
.++++||+++++++++++++||++++.|+|+| +|||+++|++|
T Consensus 198 ~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~---~Gp~~~~D~~G 240 (283)
T 4e12_A 198 VPLLDAAAELLVDGIADPETIDKTWRIGTGAP---KGPFEIFDIVG 240 (283)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCS---SCHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhccCCC---cCHHHHHHhcc
Confidence 99999999999999999999999999999998 99999999987
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=336.83 Aligned_cols=234 Identities=24% Similarity=0.368 Sum_probs=210.1
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||++||..++++|++|++||++++.++++.+.+.
T Consensus 3 m~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~--------------------------------- 49 (483)
T 3mog_A 3 LNVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIH--------------------------------- 49 (483)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHH---------------------------------
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHH---------------------------------
Confidence 457899999 999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+.+++++|.++.. ..+..+.+++++++++ ++++||+||+|+|++.++|+++++++.+.+++++||+
T Consensus 50 ----------~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~Ila 117 (483)
T 3mog_A 50 ----------ARLNSRVTRGKLTAE-TCERTLKRLIPVTDIH-ALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLT 117 (483)
T ss_dssp ----------HHHHTTTTTTSSCHH-HHHHHHHTEEEECCGG-GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred ----------HHHHHHHHcCCCCHH-HHHHHHhceeEeCCHH-HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEE
Confidence 334444444432210 0124567788899996 6899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||+|+++++.+++.+.+|.+++|+|||+|+..++++|++++..|++++++.++++++.+|+.++++ ++.+||++||++.
T Consensus 118 sntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v-~d~~Gfi~Nr~l~ 196 (483)
T 3mog_A 118 TNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRC-HSTPGFIVNRVAR 196 (483)
T ss_dssp ECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEE-ESCTTTTHHHHTH
T ss_pred ecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEE-eccCcchHHHHHH
Confidence 999999999999988899999999999999999999999999999999999999999999999999 4899999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++|++.+++++++|+++||++++.|+|+| +|||+++|.+|
T Consensus 197 ~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p---~GP~~l~D~~G 238 (483)
T 3mog_A 197 PYYSEAWRALEEQVAAPEVIDAALRDGAGFP---MGPLELTDLIG 238 (483)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHTTCCS---SCHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhcCCCC---CCHHHHHHHhc
Confidence 9999999999999999999999999999999 99999999987
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=309.75 Aligned_cols=212 Identities=33% Similarity=0.477 Sum_probs=192.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||++||.+++ +|++|++||++++.++++.+.+
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l------------------------------------ 54 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQI------------------------------------ 54 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHS------------------------------------
T ss_pred CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHH------------------------------------
Confidence 4789999 999999999999 9999999999999988765420
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.++.++++++++++++ +++||+||||+||+.++|+.+|++++.. +++|+++|
T Consensus 55 -------------------------~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~~l~~~l~~~--~~~Ilasn 106 (293)
T 1zej_A 55 -------------------------PEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSN 106 (293)
T ss_dssp -------------------------CGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEEC
T ss_pred -------------------------HHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEE
Confidence 0123355788889985 8999999999999999999999999886 89999999
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHH
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~ 250 (294)
|||++++.+++.+.+|.+++|+|||+|++.++++||+++..|+++++++++++++.+|+++++++ |. |++||++.++
T Consensus 107 tSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~~~~~~~~~l~~~lGk~~v~v~-d~--fi~Nrll~~~ 183 (293)
T 1zej_A 107 TSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCK-GQ--SLVNRFNAAV 183 (293)
T ss_dssp CSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEE-SS--CHHHHHHHHH
T ss_pred CCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCHHHHHHHHHHHHHcCCeEEEec-cc--ccHHHHHHHH
Confidence 99999999998888899999999999999999999999999999999999999999999999995 65 9999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 251 ~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++||+.++++|. ++++||++++.|+|+||+..|||+++|.+|
T Consensus 184 ~~EA~~l~~~Gv-~~e~id~~~~~g~g~~~~~~GP~~l~D~~G 225 (293)
T 1zej_A 184 LSEASRMIEEGV-RAEDVDRVWKHHLGLLYTLFGPLGNLDYIG 225 (293)
T ss_dssp HHHHHHHHHHTC-CHHHHHHHHHTTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHhcCCCCCCCCCHHHHHHHhc
Confidence 999999999966 999999999999999943349999999987
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=298.32 Aligned_cols=237 Identities=25% Similarity=0.389 Sum_probs=208.2
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.+.+++|+|| |.||++||..|+++|++|++||+++++++++.+.+.
T Consensus 12 ~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~-------------------------------- 59 (302)
T 1f0y_A 12 KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIE-------------------------------- 59 (302)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH--------------------------------
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHH--------------------------------
Confidence 4567899999 999999999999999999999999999888766554
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCC----CChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCC
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGS----LSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSS 163 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~----~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~ 163 (294)
+.++.++++|.++.. +.......++++++++.+++++||+||+|+|++.++|+.+++++.+.+++
T Consensus 60 -----------~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~ 128 (302)
T 1f0y_A 60 -----------ESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAE 128 (302)
T ss_dssp -----------HHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCT
T ss_pred -----------HHHHHHHHcCCCCccccchhhHHHHHhceEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCC
Confidence 334444555543210 00112345678889998889999999999999999999999999999999
Q ss_pred CeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHH
Q psy13746 164 NTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFAL 243 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~ 243 (294)
++||++++|+++++++++.+.+|.++++.||++|+..++++++++++.+++++++.+.++++.+|+.++++ ++.+|++.
T Consensus 129 ~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~-~~~~g~i~ 207 (302)
T 1f0y_A 129 HTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC-KDTPGFIV 207 (302)
T ss_dssp TCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEE-CSCTTTTH
T ss_pred CeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEe-cCcccccH
Confidence 99999999999999998888888999999999999999999999999999999999999999999999998 57899999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 244 NRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 244 nri~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
||++.++++|+++++++++++++++|.+++.|+|+| +|||+++|.+|
T Consensus 208 nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p---~GP~~~~D~~G 254 (302)
T 1f0y_A 208 NRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFELLDYVG 254 (302)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCS---SCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC---CCHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999987
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=330.07 Aligned_cols=232 Identities=26% Similarity=0.413 Sum_probs=205.6
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
+.+++|+|| |.||++||.+++++|++|++||++++.++++.+.+.
T Consensus 310 ~~~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~--------------------------------- 356 (725)
T 2wtb_A 310 RKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVK--------------------------------- 356 (725)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHH---------------------------------
T ss_pred ccCcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH---------------------------------
Confidence 457899999 999999999999999999999999999888766554
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. .....+.++++++|++ ++++||+||+|+|++.++|+++++++.+++++++||+
T Consensus 357 ----------~~l~~~~~~G~~~~~-~~~~~~~~i~~~~d~~-~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~Ila 424 (725)
T 2wtb_A 357 ----------ANLQSRVRKGSMSQE-KFEKTMSLLKGSLDYE-SFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILA 424 (725)
T ss_dssp ----------HHHHHTTC----CTT-HHHHTTTSEEEESSSG-GGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred ----------HHHHHHHhcCCCCHH-HHHHHhcceEEeCCHH-HHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 344455555533321 1234567888899995 7999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||+++++++++.+.+|.+++|.|||+|++.++++|+++|+.|++++++.++++++.+|+.+++++ +.+||++||++.
T Consensus 425 sntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~Nril~ 503 (725)
T 2wtb_A 425 SNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVG-NCTGFAVNRMFF 503 (725)
T ss_dssp ECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE-SSTTTTHHHHHH
T ss_pred eCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEEC-CCccHHHHHHHH
Confidence 9999999999998888899999999999999999999999999999999999999999999999995 889999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++|++.++++| +++++||+++ .++|+| +|||+++|.+|
T Consensus 504 ~~~~Ea~~l~~~G-~~~e~id~~~-~~~g~p---~Gp~~l~D~vG 543 (725)
T 2wtb_A 504 PYTQAAMFLVECG-ADPYLIDRAI-SKFGMP---MGPFRLCDLVG 543 (725)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHH-HHHTCS---SCHHHHHHHHC
T ss_pred HHHHHHHHHHHCC-CCHHHHHHHH-HHcCCC---CCHHHHHHHhc
Confidence 9999999999995 8999999999 689999 99999999988
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-40 Score=328.02 Aligned_cols=232 Identities=24% Similarity=0.355 Sum_probs=206.6
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
+.+++|+|| |.||++||.+++++|++|++||++++.++++.+++.
T Consensus 312 ~~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~--------------------------------- 358 (715)
T 1wdk_A 312 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAA--------------------------------- 358 (715)
T ss_dssp CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHH---------------------------------
T ss_pred ccCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH---------------------------------
Confidence 467899999 999999999999999999999999999887766554
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. .....+.++++++|+ +++++||+||+|+||+.++|+++++++.+++++++||+
T Consensus 359 ----------~~l~~~~~~G~~~~~-~~~~~~~~i~~~~d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~Ila 426 (715)
T 1wdk_A 359 ----------KLLVGRVDKGRMTPA-KMAEVLNGIRPTLSY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILA 426 (715)
T ss_dssp ----------HHHHHHHTTTSSCHH-HHHHHHHHEEEESSS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred ----------HHHHHHHhcCCCCHH-HHHHHhcCeEEECCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEE
Confidence 445555655533210 012345678888898 57999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||+++++++++.+.+|.+++|+|||+|++.++++|+++|+.|++++++.++++++.+|+.+++++ +.+||++||++.
T Consensus 427 sntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~-d~~Gfi~Nril~ 505 (715)
T 1wdk_A 427 SNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVN-DCPGFLVNRVLF 505 (715)
T ss_dssp ECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE-SCTTTTHHHHHH
T ss_pred eCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEc-CCCChhhhHHHH
Confidence 9999999999998888899999999999999999999999999999999999999999999999995 889999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++|++.++++| +++++||.++ .++|+| +|||+++|.+|
T Consensus 506 ~~~~Ea~~l~~~G-~~~~~id~~~-~~~G~p---~Gp~~l~D~vG 545 (715)
T 1wdk_A 506 PYFGGFAKLVSAG-VDFVRIDKVM-EKFGWP---MGPAYLMDVVG 545 (715)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHH-HHHTCS---SCHHHHHHHHC
T ss_pred HHHHHHHHHHHCC-CCHHHHHHHH-HHcCCC---CCHHHHHHHhh
Confidence 9999999999995 8999999999 689999 99999999987
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=300.62 Aligned_cols=231 Identities=21% Similarity=0.372 Sum_probs=200.6
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.+.+++|+|| |.||++||..++++|++|++||++++.++++.+.+.
T Consensus 34 ~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~-------------------------------- 81 (463)
T 1zcj_A 34 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIIT-------------------------------- 81 (463)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHH--------------------------------
T ss_pred cCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHH--------------------------------
Confidence 4567899999 999999999999999999999999999888776554
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+.+.+++++|.++.. ..+. ...+.+++++ ++++||+||+|+|++.++|+++++++.+.+++++||
T Consensus 82 -----------~~l~~~~~~g~~~~~-~~~~--~~~~i~~~~~-~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii 146 (463)
T 1zcj_A 82 -----------FTLEKEASRAHQNGQ-ASAK--PKLRFSSSTK-ELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFL 146 (463)
T ss_dssp -----------HHHHHHHHHHHHTTC-CCCC--CCEEEESCGG-GGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEE
T ss_pred -----------HHHHHHHHcCCCCHH-HHHH--HHhhhcCCHH-HHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEE
Confidence 223333444432211 0001 1123467784 689999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHH
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~ 247 (294)
++|||+++++.+++.+.+|.+++|+|||+|++.++++|+++|+.|++++++.++++++.+|++++++ ++.+|+++||++
T Consensus 147 ~snTs~~~~~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v-~~~~gfi~Nrll 225 (463)
T 1zcj_A 147 CTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVV-GNCYGFVGNRML 225 (463)
T ss_dssp EECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEB-CCSTTTTHHHHH
T ss_pred EeCCCCcCHHHHHHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE-CCCccHHHHHHH
Confidence 9999999999999888889999999999999999999999999999999999999999999999999 489999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 248 FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 248 ~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
.++++|++.++++| +++++||.+++ ++|+| +|||+++|.+|
T Consensus 226 ~~~~~ea~~l~~~G-~~~~~id~~~~-~~g~p---~Gp~~l~D~~G 266 (463)
T 1zcj_A 226 APYYNQGFFLLEEG-SKPEDVDGVLE-EFGFK---MGPFRVSDLAG 266 (463)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHH-HHTCS---SCHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHH-HcCCC---CcHHHHHHHcc
Confidence 99999999999996 89999999998 79998 99999999987
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=183.24 Aligned_cols=194 Identities=16% Similarity=0.219 Sum_probs=150.2
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.++||+|| |.||.+||.+|+++||+|++|||++++.+.+.+
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~------------------------------------- 44 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA------------------------------------- 44 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-------------------------------------
T ss_pred CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-------------------------------------
Confidence 35799999 999999999999999999999999988775432
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH--HHhcccCCCeEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTIL 167 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii 167 (294)
.| .+..+++.+++++||+||.|+|.+..++..++. .+.+.++++++|
T Consensus 45 -----------------~G--------------a~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~ii 93 (300)
T 3obb_A 45 -----------------AG--------------ASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLV 93 (300)
T ss_dssp -----------------TT--------------CEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEE
T ss_pred -----------------cC--------------CEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEE
Confidence 23 356788999999999999999998877655543 367778889988
Q ss_pred EecCCCCCHHH---HHhhcCCCCceeeeeecCCC-C-------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcc
Q psy13746 168 SSSTSSFLPSV---LSEHSTHRSQFIVAHPVNPP-Y-------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTT 236 (294)
Q Consensus 168 ~s~tSt~~~~~---ia~~l~~~~~~ig~h~~~p~-~-------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~ 236 (294)
++ +||++++. +++.+. -.|.+|++.| . .+.+..++.| +++.+++++++|+.+|++++++++
T Consensus 94 Id-~sT~~p~~~~~~a~~~~----~~G~~~lDaPVsGg~~~A~~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~ 165 (300)
T 3obb_A 94 LE-CSTIAPTSARKIHAAAR----ERGLAMLDAPVSGGTAGAAAGTLTFMVGG---DAEALEKARPLFEAMGRNIFHAGP 165 (300)
T ss_dssp EE-CSCCCHHHHHHHHHHHH----TTTCEEEECCEESCHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEES
T ss_pred EE-CCCCCHHHHHHHHHHHH----HcCCEEEecCCCCCHHHHHhCCEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCC
Confidence 75 66777764 333332 1255666533 2 2446666666 899999999999999999999976
Q ss_pred ccccc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcC
Q psy13746 237 EIRGF---ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYA 281 (294)
Q Consensus 237 ~~~g~---v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~ 281 (294)
.+.|. ++|+++. ..++|++.++++.++|++++.++++.+.+.+|.
T Consensus 166 ~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~ 217 (300)
T 3obb_A 166 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWA 217 (300)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchH
Confidence 55554 5666654 468999999999999999999999998887763
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-21 Score=172.80 Aligned_cols=195 Identities=11% Similarity=0.120 Sum_probs=139.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||.+||.+|+++||+|++|||++++.+++.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~---------------------------------------- 45 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLT---------------------------------------- 45 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTT----------------------------------------
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH----------------------------------------
Confidence 589999 99999999999999999999999998765431
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
+.| .+..+++.++++++|+||.|+|.+..+...+..++...+.+++++++ +
T Consensus 46 --------------~~G--------------~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid-~ 96 (297)
T 4gbj_A 46 --------------KLG--------------ATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVEKLGKDGVHVS-M 96 (297)
T ss_dssp --------------TTT--------------CEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEE-C
T ss_pred --------------HcC--------------CeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHhhcCCCeEEEE-C
Confidence 122 35678889999999999999999887766666778888899988875 5
Q ss_pred CCCCHHH---HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccc-cccc--
Q psy13746 172 SSFLPSV---LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE-IRGF-- 241 (294)
Q Consensus 172 St~~~~~---ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~-~~g~-- 241 (294)
||.+++. +++.+. +..+|+.......+ ..+.+..++.| +++.+++++++|+.+|+++++++.+ +.|.
T Consensus 97 sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG---~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~ 173 (297)
T 4gbj_A 97 STISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSG---NAGAKERIKPIVENFVKGVFDFGDDPGAANVI 173 (297)
T ss_dssp SCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEE---CHHHHHHHHHHHHTTCSEEEECCSCTTHHHHH
T ss_pred CCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeeccc---chhHHHHHHHHHHHhhCCeEEecCCccHHHHH
Confidence 6666664 333332 22333332222211 12334445555 8899999999999999999998522 3343
Q ss_pred -HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 242 -ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 242 -v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
++|+++. ..++|++.++++.|+|++++.+++..+.+.+|
T Consensus 174 Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~ 217 (297)
T 4gbj_A 174 KLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAP 217 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCc
Confidence 5666653 46899999999999999999999998887765
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-20 Score=162.36 Aligned_cols=193 Identities=12% Similarity=0.149 Sum_probs=151.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
+||+|| |.||++||..|+++|+ +|++||+++++++++.+..
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~--------------------------------- 49 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY--------------------------------- 49 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH---------------------------------
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh---------------------------------
Confidence 689999 9999999999999998 9999999998877654321
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
| +..++++.++++++|+||.|+|.+. ..++++++.+.++++++|
T Consensus 50 --------------------g--------------~~~~~~~~e~~~~aDvVilav~~~~--~~~v~~~l~~~l~~~~~v 93 (247)
T 3gt0_A 50 --------------------G--------------LTTTTDNNEVAKNADILILSIKPDL--YASIINEIKEIIKNDAII 93 (247)
T ss_dssp --------------------C--------------CEECSCHHHHHHHCSEEEECSCTTT--HHHHC---CCSSCTTCEE
T ss_pred --------------------C--------------CEEeCChHHHHHhCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEE
Confidence 2 3456788888899999999997654 678889999999999998
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHH--
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALN-- 244 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~n-- 244 (294)
+|.+++++++.+++.+..+.++++.||..|...+. ...+++++.++++.+++++++|+.+|+ ++++..+....+..
T Consensus 94 vs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~ 172 (247)
T 3gt0_A 94 VTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVS 172 (247)
T ss_dssp EECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHH
T ss_pred EEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHh
Confidence 88999999998888887677899999999987666 677888888999999999999999998 66664332222111
Q ss_pred ---HHHHHHHHHHHHH-HHcCCCCHHHHHHHHHccc
Q psy13746 245 ---RIQFAVLNECYHL-VHDGVLSAKDIDRVMSEGL 276 (294)
Q Consensus 245 ---ri~~a~~~Ea~~l-~~~~~~~~~~id~a~~~g~ 276 (294)
..+...+.|++.. +.+.|+++++..+++..++
T Consensus 173 g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~ 208 (247)
T 3gt0_A 173 GSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAV 208 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1123456788766 7788999999888877643
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-20 Score=165.71 Aligned_cols=169 Identities=17% Similarity=0.241 Sum_probs=135.8
Q ss_pred CCCCccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEee
Q psy13746 9 AQGGFYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYD 84 (294)
Q Consensus 9 ~~~~~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 84 (294)
.++.+++|+|| |.||++||..|+++|+ +|++||++++.++.+.+
T Consensus 29 ~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~-------------------------------- 76 (314)
T 3ggo_A 29 KSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-------------------------------- 76 (314)
T ss_dssp CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH--------------------------------
T ss_pred hhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH--------------------------------
Confidence 35556899999 9999999999999999 99999999988765432
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhh-hccCCcEEEEcCCcchHHHHHHHHHHhcccCC
Q psy13746 85 VLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE-CLEDAIFIQESVPEILQIKHQVYRAIDIFMSS 163 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~-a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~ 163 (294)
.|..+ ..++++.+ ++++||+||+|+|++. ..++++++.+.+++
T Consensus 77 ----------------------~G~~~------------~~~~~~~~~~~~~aDvVilavp~~~--~~~vl~~l~~~l~~ 120 (314)
T 3ggo_A 77 ----------------------LGIID------------EGTTSIAKVEDFSPDFVMLSSPVRT--FREIAKKLSYILSE 120 (314)
T ss_dssp ----------------------TTSCS------------EEESCTTGGGGGCCSEEEECSCGGG--HHHHHHHHHHHSCT
T ss_pred ----------------------CCCcc------------hhcCCHHHHhhccCCEEEEeCCHHH--HHHHHHHHhhccCC
Confidence 13211 24567777 7999999999999875 56788999999999
Q ss_pred CeEEEecCCCCC--HHHHHhhcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy13746 164 NTILSSSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGM 229 (294)
Q Consensus 164 ~~ii~s~tSt~~--~~~ia~~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~ 229 (294)
+++|++.+|+.. .+.+++.++ .+|++.||+.++. .+..+.+++++.++++.+++++++++.+|+
T Consensus 121 ~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~ 198 (314)
T 3ggo_A 121 DATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGG 198 (314)
T ss_dssp TCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 999998777643 345555543 3899999998753 356888999888999999999999999999
Q ss_pred eeEEEcccccccHHHHHH
Q psy13746 230 KPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 230 ~~v~v~~~~~g~v~nri~ 247 (294)
++++++++.++.+...+.
T Consensus 199 ~v~~~~~~~hD~~~a~~s 216 (314)
T 3ggo_A 199 VVEYMSPELHDYVFGVVS 216 (314)
T ss_dssp EEEECCHHHHHHHHHHHT
T ss_pred EEEEcCHHHHHHHHHHHH
Confidence 999997777887666554
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-20 Score=165.11 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=130.3
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCC---eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeec
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGY---KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDV 85 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~---~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 85 (294)
|+.++|+|| |.||++||..|+++|+ +|++||+++++++++.+..
T Consensus 1 M~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~------------------------------- 49 (280)
T 3tri_A 1 MNTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC------------------------------- 49 (280)
T ss_dssp -CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT-------------------------------
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc-------------------------------
Confidence 345799999 9999999999999999 9999999999877654310
Q ss_pred chHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcc-cCCC
Q psy13746 86 LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF-MSSN 164 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~-~~~~ 164 (294)
| +..+++..++++++|+||+|+|+.. ..++++++.+. ++++
T Consensus 50 ----------------------g--------------i~~~~~~~~~~~~aDvVilav~p~~--~~~vl~~l~~~~l~~~ 91 (280)
T 3tri_A 50 ----------------------G--------------VHTTQDNRQGALNADVVVLAVKPHQ--IKMVCEELKDILSETK 91 (280)
T ss_dssp ----------------------C--------------CEEESCHHHHHSSCSEEEECSCGGG--HHHHHHHHHHHHHTTT
T ss_pred ----------------------C--------------CEEeCChHHHHhcCCeEEEEeCHHH--HHHHHHHHHhhccCCC
Confidence 1 3456777788999999999998743 77899999998 8899
Q ss_pred eEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEE-EecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 165 TILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE-IVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 165 ~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lve-iv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
++|+|++++++++.+++.+..+.++++.||+.|...+..++ +++++.++++.++.++++|+.+|+. +++
T Consensus 92 ~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~~~~~~~~~~~v~~l~~~iG~~-~~v 161 (280)
T 3tri_A 92 ILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGLV-IWV 161 (280)
T ss_dssp CEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHGGGEEE-EEC
T ss_pred eEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeCCCCCHHHHHHHHHHHHHCCCe-EEE
Confidence 88889999999999999888778999999999987777555 6778889999999999999999974 455
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=165.80 Aligned_cols=194 Identities=16% Similarity=0.172 Sum_probs=145.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||++||..|+++|++|++||+++++++++.+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~--------------------------------------- 42 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA--------------------------------------- 42 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH---------------------------------------
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH---------------------------------------
Confidence 589999 999999999999999999999999988765432
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s 169 (294)
.| +..++++.++++++|+||+|+|++..++..++ +++.+.++++++|++
T Consensus 43 ---------------~g--------------~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~ 93 (287)
T 3pef_A 43 ---------------LG--------------AERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVD 93 (287)
T ss_dssp ---------------TT--------------CEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEE
T ss_pred ---------------CC--------------CeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEe
Confidence 12 35678888889999999999998766655444 778888889998875
Q ss_pred cCCCCCHHH---HHhhcC-CCCceeeeeecCCC----CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc
Q psy13746 170 STSSFLPSV---LSEHST-HRSQFIVAHPVNPP----YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF 241 (294)
Q Consensus 170 ~tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~----~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~ 241 (294)
. |+..+.. +.+.+. +..+|+. ||+.+. ..+.+..++++ +++.+++++++++.+|++++++++.+.+.
T Consensus 94 ~-st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~~~ 168 (287)
T 3pef_A 94 M-STVDPATSQRIGVAVVAKGGRFLE-APVSGSKKPAEDGTLIILAAG---DRNLYDEAMPGFEKMGKKIIHLGDVGKGA 168 (287)
T ss_dssp C-SCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEEEEE---CHHHHHHHHHHHHHHEEEEEECSSTTHHH
T ss_pred C-CCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHHHhcCCEEEEEeC---CHHHHHHHHHHHHHhCCCeEEeCCCCHHH
Confidence 4 5555553 333332 3344555 443321 12455666665 78999999999999999999986444443
Q ss_pred ---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 242 ---ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 242 ---v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
++|+++. ..++|++.++++.+++++++..++..+.+.+|
T Consensus 169 ~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~ 214 (287)
T 3pef_A 169 EMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANP 214 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccH
Confidence 4455543 47899999999999999999999998776654
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-20 Score=166.54 Aligned_cols=198 Identities=14% Similarity=0.183 Sum_probs=146.1
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
...+++|+|| |.||.+||..|+++|++|++||+++++++++.+
T Consensus 18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~----------------------------------- 62 (310)
T 3doj_A 18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE----------------------------------- 62 (310)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------------------------------
T ss_pred cccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------------------------------
Confidence 4456899999 999999999999999999999999988765432
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCe
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNT 165 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ 165 (294)
.| +..++++.+++++||+||.|+|++..++..++ +++.+.+++++
T Consensus 63 -------------------~g--------------~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ 109 (310)
T 3doj_A 63 -------------------HG--------------ASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGK 109 (310)
T ss_dssp -------------------TT--------------CEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTC
T ss_pred -------------------CC--------------CeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCC
Confidence 12 35567888889999999999998776654443 67888888999
Q ss_pred EEEecCCCCCHHH---HHhhcC-CCCceeeeeecCCC----CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 166 ILSSSTSSFLPSV---LSEHST-HRSQFIVAHPVNPP----YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 166 ii~s~tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~----~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
+|++ +|+..+.. +.+.+. +..+|+. ||+... ..+.+..++++ +++.+++++++++.+|++++++++.
T Consensus 110 ~vv~-~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~ 184 (310)
T 3doj_A 110 GYID-MSTVDAETSLKINEAITGKGGRFVE-GPVSGSKKPAEDGQLIILAAG---DKALFEESIPAFDVLGKRSFYLGQV 184 (310)
T ss_dssp EEEE-CSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHHHHHTCEEEEEEE---CHHHHHHHHHHHHHHEEEEEECSST
T ss_pred EEEE-CCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChhHHhcCCeEEEEcC---CHHHHHHHHHHHHHhCCCEEEeCCc
Confidence 8875 45555553 333332 2334444 333211 12456666666 6899999999999999999998643
Q ss_pred cccc---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 238 IRGF---ALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 238 ~~g~---v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
+.+. ++|+++ .+.++|++.++++.+++++++..++..+.+.+|
T Consensus 185 g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~ 234 (310)
T 3doj_A 185 GNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNP 234 (310)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccH
Confidence 3332 344443 346899999999999999999999998776654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.9e-20 Score=164.17 Aligned_cols=198 Identities=16% Similarity=0.130 Sum_probs=145.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||++||..|+++|++|++||+++++++++.+
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~--------------------------------------- 56 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE--------------------------------------- 56 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH---------------------------------------
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH---------------------------------------
Confidence 589999 999999999999999999999999988765432
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.| ++.+++++++++ +|+||+|+|++..++ .+++++.+.++++++|++.
T Consensus 57 ---------------~g--------------~~~~~~~~~~~~-aDvvi~~vp~~~~~~-~v~~~l~~~l~~g~ivv~~- 104 (296)
T 3qha_A 57 ---------------AG--------------ATLADSVADVAA-ADLIHITVLDDAQVR-EVVGELAGHAKPGTVIAIH- 104 (296)
T ss_dssp ---------------TT--------------CEECSSHHHHTT-SSEEEECCSSHHHHH-HHHHHHHTTCCTTCEEEEC-
T ss_pred ---------------CC--------------CEEcCCHHHHHh-CCEEEEECCChHHHH-HHHHHHHHhcCCCCEEEEe-
Confidence 12 356788998888 999999999876654 4568898889999988754
Q ss_pred CCCCHH---HHHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc---
Q psy13746 172 SSFLPS---VLSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF--- 241 (294)
Q Consensus 172 St~~~~---~ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~--- 241 (294)
|+..+. .+.+.+. +..+|+....+.++ ..+.+..++.+ +++.+++++++++.+|++++++++.+.+.
T Consensus 105 st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~K 181 (296)
T 3qha_A 105 STISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGA---DREVYERIKPAFKHWAAVVIHAGEPGAGTRMK 181 (296)
T ss_dssp SCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEEC---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecC---CHHHHHHHHHHHHHHcCCeEEcCChhHHHHHH
Confidence 455444 3444333 23344443222221 12456666666 78999999999999999999996434332
Q ss_pred HHHHHHH----HHHHHHHHHHHcCCCCHHHH------HHHHHcccCCCcCCCCh
Q psy13746 242 ALNRIQF----AVLNECYHLVHDGVLSAKDI------DRVMSEGLGLRYAFLGP 285 (294)
Q Consensus 242 v~nri~~----a~~~Ea~~l~~~~~~~~~~i------d~a~~~g~g~~~~~~Gp 285 (294)
++|+++. ..++|++.++++.+++++++ .+++..+.|.+|...+|
T Consensus 182 l~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~~~ 235 (296)
T 3qha_A 182 LARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNM 235 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhhch
Confidence 4444443 46899999999999999999 99998877666543344
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=163.35 Aligned_cols=196 Identities=15% Similarity=0.173 Sum_probs=143.4
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
.++|+|| |.||++||..|+++|++|++||+++++++.+.+
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-------------------------------------- 48 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLA-------------------------------------- 48 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH--------------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--------------------------------------
Confidence 3689999 999999999999999999999999988765432
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILS 168 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~ 168 (294)
.|. ...++++.+++++||+||+|+|++..++..++ +++.+.++++++|+
T Consensus 49 ----------------~g~-------------~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv 99 (303)
T 3g0o_A 49 ----------------EGA-------------CGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVM 99 (303)
T ss_dssp ----------------TTC-------------SEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEE
T ss_pred ----------------cCC-------------ccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEE
Confidence 121 11256788888999999999999766654443 66788888999887
Q ss_pred ecCCCCCHH---HHHhhcC-CCCceeeeeecCC-C---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcc-ccc
Q psy13746 169 SSTSSFLPS---VLSEHST-HRSQFIVAHPVNP-P---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTT-EIR 239 (294)
Q Consensus 169 s~tSt~~~~---~ia~~l~-~~~~~ig~h~~~p-~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~-~~~ 239 (294)
+ +|+..+. .+.+.+. ....|+. ||+.+ + ..+.+..++++ +++.+++++++++.+|++++++++ .+.
T Consensus 100 ~-~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~~~~~g~ 174 (303)
T 3g0o_A 100 V-SSTISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMTVMASG---SEAAFTRLKPVLDAVASNVYRISDTPGA 174 (303)
T ss_dssp E-CSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEEEEEEC---CHHHHHHHHHHHHHHEEEEEEEESSTTH
T ss_pred e-cCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeEEEeCC---CHHHHHHHHHHHHHHCCCEEECCCCCcH
Confidence 5 4555554 3333333 2344555 44432 1 12445656655 789999999999999999999853 233
Q ss_pred cc---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 240 GF---ALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 240 g~---v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
+. ++|+++ .+.++|++.++++.+++++++..++..+.+.+|
T Consensus 175 a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~ 222 (303)
T 3g0o_A 175 GSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSW 222 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCH
Confidence 32 344444 346899999999999999999999998777654
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=162.91 Aligned_cols=195 Identities=13% Similarity=0.128 Sum_probs=142.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||++||..|+++|++|++||+++++++++.+
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~--------------------------------------- 42 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVA--------------------------------------- 42 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHH---------------------------------------
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH---------------------------------------
Confidence 689999 999999999999999999999999988765432
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s 169 (294)
.| +..++++.+++++||+||+|+|++..++..++ +++.+.++++++|++
T Consensus 43 ---------------~g--------------~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~ 93 (287)
T 3pdu_A 43 ---------------LG--------------ARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYID 93 (287)
T ss_dssp ---------------HT--------------CEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEE
T ss_pred ---------------CC--------------CeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEE
Confidence 12 35567888889999999999999766654443 677888888888875
Q ss_pred cCCCCCHHH---HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc-
Q psy13746 170 STSSFLPSV---LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF- 241 (294)
Q Consensus 170 ~tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~- 241 (294)
+|+..+.. +.+.+. +..+|+....+.++ ..+.+..++.+ +++.+++++++++.+|++++++++.+.+.
T Consensus 94 -~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~ 169 (287)
T 3pdu_A 94 -MSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAG---DQSLFTDAGPAFAALGKKCLHLGEVGQGAR 169 (287)
T ss_dssp -CSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeC---CHHHHHHHHHHHHHhCCCEEEcCCCChHHH
Confidence 45555543 333332 23344443222222 12345555555 78999999999999999999986434443
Q ss_pred --HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 242 --ALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 242 --v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
++|+.+ ...++|++.++++.+++++++..++..+.+.+|
T Consensus 170 ~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~ 214 (287)
T 3pdu_A 170 MKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANP 214 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccCh
Confidence 344443 346899999999999999999999998776654
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=162.62 Aligned_cols=196 Identities=11% Similarity=0.113 Sum_probs=142.2
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
..++|+|| |.||++||..|+++|++|++||+++++++++.+
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~------------------------------------- 72 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAA------------------------------------- 72 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-------------------------------------
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-------------------------------------
Confidence 45699999 999999999999999999999999988765421
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH-HHhcccCCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR-AIDIFMSSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~-~l~~~~~~~~ii~ 168 (294)
.| +..++++.+++++||+||+|+|++..++..+.. ++.+.++++++|+
T Consensus 73 -----------------~g--------------~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi 121 (320)
T 4dll_A 73 -----------------LG--------------ATIHEQARAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFL 121 (320)
T ss_dssp -----------------TT--------------CEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEE
T ss_pred -----------------CC--------------CEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEE
Confidence 12 356788988899999999999987665543332 6667788888887
Q ss_pred ecCCCCCHH---HHHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc
Q psy13746 169 SSTSSFLPS---VLSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF 241 (294)
Q Consensus 169 s~tSt~~~~---~ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~ 241 (294)
+. |+..+. .+.+.+. +..+|+....+.++ ..+.+..++.| +++.+++++++++.+ ++++++++.+.|.
T Consensus 122 ~~-st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~-~~~~~~g~~g~a~ 196 (320)
T 4dll_A 122 DM-ASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGG---KPADFERSLPLLKVF-GRATHVGPHGSGQ 196 (320)
T ss_dssp EC-SCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEES---CHHHHHHHHHHHHHH-EEEEEEESTTHHH
T ss_pred ec-CCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCC---CHHHHHHHHHHHHhc-CCEEEeCCccHHH
Confidence 54 444444 3333332 23344443212111 12455666665 789999999999999 8898986545443
Q ss_pred ---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 242 ---ALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 242 ---v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
++|+++ .+.++|++.++++.|++++++..++..+.+.+|
T Consensus 197 ~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~ 242 (320)
T 4dll_A 197 LTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSR 242 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCH
Confidence 444444 346899999999999999999999998777654
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=157.82 Aligned_cols=203 Identities=16% Similarity=0.119 Sum_probs=145.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCe-EEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYK-VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~-V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.||+.+|..+++.|++ |.+||+++++++++.+.+
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~------------------------------------ 54 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV------------------------------------ 54 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT------------------------------------
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc------------------------------------
Confidence 589999 99999999999999999 999999998876543311
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
| +..++++.++++++|+||+|+|++. . .++++++.+.++++++|+++
T Consensus 55 -----------------g--------------~~~~~~~~~~~~~~Dvvi~av~~~~-~-~~v~~~l~~~~~~~~ivv~~ 101 (266)
T 3d1l_A 55 -----------------E--------------AEYTTDLAEVNPYAKLYIVSLKDSA-F-AELLQGIVEGKREEALMVHT 101 (266)
T ss_dssp -----------------T--------------CEEESCGGGSCSCCSEEEECCCHHH-H-HHHHHHHHTTCCTTCEEEEC
T ss_pred -----------------C--------------CceeCCHHHHhcCCCEEEEecCHHH-H-HHHHHHHHhhcCCCcEEEEC
Confidence 1 3446678778899999999999874 3 67888998888899999998
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCC-----CCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc-ccc--
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPY-----FIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI-RGF-- 241 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~-----~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~-~g~-- 241 (294)
+++.+.+.+++.+..+ -..||+.|.. ..+ ...++.+ ++++.++.++++++.+|+++++++.+. +++
T Consensus 102 s~~~~~~~l~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~v~~--~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 176 (266)
T 3d1l_A 102 AGSIPMNVWEGHVPHY---GVFYPMQTFSKQREVDFKEIPFFIEA--SSTEDAAFLKAIASTLSNRVYDADSEQRKSLHL 176 (266)
T ss_dssp CTTSCGGGSTTTCSSE---EEEEECCCC---CCCCCTTCCEEEEE--SSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhc---cCcCCceecCCCchhhcCCCeEEEec--CCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHH
Confidence 8888877665554331 2356766521 111 2123323 588999999999999999999985332 344
Q ss_pred ---HHHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHHccc------CCCcCCCChhhhhccc
Q psy13746 242 ---ALNRIQ--FAVLNECYHLVHDGVLSAKDIDRVMSEGL------GLRYAFLGPLETIHLN 292 (294)
Q Consensus 242 ---v~nri~--~a~~~Ea~~l~~~~~~~~~~id~a~~~g~------g~~~~~~Gp~~~~D~~ 292 (294)
++|++. ...++|+ ++++.|++++++..++..++ |...+.+||++..|..
T Consensus 177 ~~~l~~~~~~~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~~~~~~~~~~~~~~GP~~r~d~~ 236 (266)
T 3d1l_A 177 AAVFTCNFTNHMYALAAE--LLKKYNLPFDVMLPLIDETARKVHELEPKTAQTGPAIRYDEN 236 (266)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHTTCCGGGGHHHHHHHHHHHHHSCHHHHCCSTTTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHcCCCHHHHHHHHHHHHHHHHhcChhhhCCCCCccCCHH
Confidence 677776 3455665 56788889988855544322 2112358999988854
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.1e-19 Score=159.04 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=131.9
Q ss_pred CccceEEE--ccccHHHHHHHHHCCC-eEEEEeCC--hHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGY-KVSLYDVL--SEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
.+++|+|| |.||.+||..|+++|+ +|++||++ ++..+.+.+
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~---------------------------------- 68 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEE---------------------------------- 68 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHH----------------------------------
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHH----------------------------------
Confidence 45799999 9999999999999999 99999997 454443221
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
.| +..++++.+++++||+||.|+|++... ++++++.+.++++++
T Consensus 69 --------------------~g--------------~~~~~~~~e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~i 112 (312)
T 3qsg_A 69 --------------------LG--------------VSCKASVAEVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGAL 112 (312)
T ss_dssp --------------------TT--------------CEECSCHHHHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCE
T ss_pred --------------------CC--------------CEEeCCHHHHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCE
Confidence 12 345678888899999999999998755 467889999999999
Q ss_pred EEecCCCCCHH---HHHhhcC-C--CCceeeeeecCCC--CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 167 LSSSTSSFLPS---VLSEHST-H--RSQFIVAHPVNPP--YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 167 i~s~tSt~~~~---~ia~~l~-~--~~~~ig~h~~~p~--~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
|++.+ |..+. .+.+.+. + ..+|+....+.|. ..+.+..+++|+. + ++++++++.+|+++++++ +.
T Consensus 113 vvd~s-t~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~~g~l~i~vgg~~---~--~~~~~ll~~~g~~~~~~g-~~ 185 (312)
T 3qsg_A 113 YADFT-SCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGHRVPLVVDGDG---A--RRFQAAFTLYGCRIEVLD-GE 185 (312)
T ss_dssp EEECC-CCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTTGGGSEEEEESTT---H--HHHHHHHHTTTCEEEECC-SS
T ss_pred EEEcC-CCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhhcCCEEEEecCCh---H--HHHHHHHHHhCCCeEEcC-CC
Confidence 88655 44444 2333332 1 2344442222221 1235777777743 2 889999999999999985 33
Q ss_pred cc--c---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHccc
Q psy13746 239 RG--F---ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGL 276 (294)
Q Consensus 239 ~g--~---v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~ 276 (294)
+| . ++|+++. .+++|++.++++.|+++ ++...+..++
T Consensus 186 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~ 231 (312)
T 3qsg_A 186 VGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASF 231 (312)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcC
Confidence 33 2 4555554 67899999999999999 5666776554
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-18 Score=155.02 Aligned_cols=196 Identities=13% Similarity=0.187 Sum_probs=142.6
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|..++|+|| |.||..||..|+++|++|++||+++++++++.+
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~------------------------------------ 63 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALER------------------------------------ 63 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT------------------------------------
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH------------------------------------
Confidence 445799999 999999999999999999999999988765431
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCC---cEEEEcCCcchHHHHHHHHHHhcccCCCe
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDA---IFIQESVPEILQIKHQVYRAIDIFMSSNT 165 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~a---DlVieavpe~~~~k~~~~~~l~~~~~~~~ 165 (294)
.| +..++++.++++++ |+||.|+|.+ . ..+++.++.+.+++++
T Consensus 64 ------------------~g--------------~~~~~s~~e~~~~a~~~DvVi~~vp~~-~-v~~vl~~l~~~l~~g~ 109 (358)
T 4e21_A 64 ------------------EG--------------IAGARSIEEFCAKLVKPRVVWLMVPAA-V-VDSMLQRMTPLLAAND 109 (358)
T ss_dssp ------------------TT--------------CBCCSSHHHHHHHSCSSCEEEECSCGG-G-HHHHHHHHGGGCCTTC
T ss_pred ------------------CC--------------CEEeCCHHHHHhcCCCCCEEEEeCCHH-H-HHHHHHHHHhhCCCCC
Confidence 12 34567888888888 9999999998 3 4577889999999999
Q ss_pred EEEecCCCCCHH--HHHhhcC-CCCceeeeeecCCCC---CCCeEEEecCCCCCHHHHHHHHHHHHHcC-----------
Q psy13746 166 ILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVNPPY---FIPLVEIVPAAWTSERVITRTREIMTEIG----------- 228 (294)
Q Consensus 166 ii~s~tSt~~~~--~ia~~l~-~~~~~ig~h~~~p~~---~~~lveiv~g~~t~~e~~~~~~~ll~~lG----------- 228 (294)
+|++.+++.+.+ .+++.+. +..+|++.....++. .+. .++.| ++++.+++++++|+.+|
T Consensus 110 iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~--~im~G--G~~~a~~~~~~ll~~lg~~~~~~~~~~~ 185 (358)
T 4e21_A 110 IVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY--CLMIG--GEKQAVERLDPVFRTLAPGIGAAPRTPG 185 (358)
T ss_dssp EEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC--EEEEE--SCHHHHHHTHHHHHHHSCCGGGSCCCTT
T ss_pred EEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC--eeeec--CCHHHHHHHHHHHHHhccccccCccccc
Confidence 998765544322 3333332 344566543333221 233 34444 47899999999999999
Q ss_pred ---------CeeEEEccccccc---HHHHHH----HHHHHHHHHHHHcC------------------------CCCHHHH
Q psy13746 229 ---------MKPVTLTTEIRGF---ALNRIQ----FAVLNECYHLVHDG------------------------VLSAKDI 268 (294)
Q Consensus 229 ---------~~~v~v~~~~~g~---v~nri~----~a~~~Ea~~l~~~~------------------------~~~~~~i 268 (294)
+.++++++.+.|. ++|+.+ ...++|++.++++. ++++++|
T Consensus 186 ~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i 265 (358)
T 4e21_A 186 REKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADI 265 (358)
T ss_dssp GGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCCHHHH
T ss_pred ccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCCHHHH
Confidence 5678887656664 344443 24689999999997 8899999
Q ss_pred HHHHHccc-CCCc
Q psy13746 269 DRVMSEGL-GLRY 280 (294)
Q Consensus 269 d~a~~~g~-g~~~ 280 (294)
.++++.|. ..+|
T Consensus 266 ~~~~~~g~~~~s~ 278 (358)
T 4e21_A 266 TEVWRRGSVISSW 278 (358)
T ss_dssp HHHHTTTSTTCBH
T ss_pred HHHHhCccHHHHH
Confidence 99999875 4443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=149.10 Aligned_cols=191 Identities=10% Similarity=0.068 Sum_probs=139.0
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
..++|+|| |.||++||..|+++|++|++||+++++++++.+
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~------------------------------------- 50 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVA------------------------------------- 50 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH-------------------------------------
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-------------------------------------
Confidence 35799999 999999999999999999999999988775432
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH--HHhcccCCCeEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTIL 167 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii 167 (294)
.| +..++++.+++++||+||.|+|++..++. ++. .+.. +.++++|
T Consensus 51 -----------------~g--------------~~~~~~~~e~~~~aDvVi~~vp~~~~~~~-v~~~~~l~~-~~~g~iv 97 (306)
T 3l6d_A 51 -----------------AG--------------AHLCESVKAALSASPATIFVLLDNHATHE-VLGMPGVAR-ALAHRTI 97 (306)
T ss_dssp -----------------HT--------------CEECSSHHHHHHHSSEEEECCSSHHHHHH-HHTSTTHHH-HTTTCEE
T ss_pred -----------------CC--------------CeecCCHHHHHhcCCEEEEEeCCHHHHHH-Hhcccchhh-ccCCCEE
Confidence 12 24567888889999999999998766554 444 4544 4577777
Q ss_pred EecCCCCCHH---HHHhhcC-CCCceeeeeecCC-CC--CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEE--cc-c
Q psy13746 168 SSSTSSFLPS---VLSEHST-HRSQFIVAHPVNP-PY--FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL--TT-E 237 (294)
Q Consensus 168 ~s~tSt~~~~---~ia~~l~-~~~~~ig~h~~~p-~~--~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v--~~-~ 237 (294)
++. |+..+. .+.+.+. ...+|+....+.+ +. ...+..+++| +++.+++++++|+.+|++++++ ++ .
T Consensus 98 id~-st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~ 173 (306)
T 3l6d_A 98 VDY-TTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTG---DREAFEQHRALLEGLAGHTVFLPWDEAL 173 (306)
T ss_dssp EEC-CCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEE---CHHHHHHHHHHHHTTCSEEEECCHHHHH
T ss_pred EEC-CCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcC---CHHHHHHHHHHHHHhcCCEEEecCCCCc
Confidence 654 444333 3433332 3456666533332 21 2245555555 7899999999999998899998 64 3
Q ss_pred ccccHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHccc
Q psy13746 238 IRGFALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMSEGL 276 (294)
Q Consensus 238 ~~g~v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~~g~ 276 (294)
+.|.+.+.++ .+.++|++.++++.|+|++++.+++..+.
T Consensus 174 g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~ 215 (306)
T 3l6d_A 174 AFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETS 215 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 5667776333 35789999999999999999999988764
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=152.23 Aligned_cols=196 Identities=14% Similarity=0.107 Sum_probs=132.0
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.||.+||..|+++| ++|++||++++..+++.+...
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~----------------------------------- 69 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRA----------------------------------- 69 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHH-----------------------------------
T ss_pred CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHH-----------------------------------
Confidence 689999 999999999999999 999999999853332222111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeecc-ChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP-VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~-~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.+.+.| + ++ ++.+++++||+||.|+|++... +.+.++.+.++++++|++
T Consensus 70 ------------~~~~~g--------------~--~~~s~~e~~~~aDvVi~avp~~~~~--~~~~~i~~~l~~~~ivv~ 119 (317)
T 4ezb_A 70 ------------RAAELG--------------V--EPLDDVAGIACADVVLSLVVGAATK--AVAASAAPHLSDEAVFID 119 (317)
T ss_dssp ------------HHHHTT--------------C--EEESSGGGGGGCSEEEECCCGGGHH--HHHHHHGGGCCTTCEEEE
T ss_pred ------------HHHHCC--------------C--CCCCHHHHHhcCCEEEEecCCHHHH--HHHHHHHhhcCCCCEEEE
Confidence 011122 2 34 6777899999999999998755 455888899999999886
Q ss_pred cCCCCCHH---HHHhhcC-CCCceeeeeecCCC--CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcc-ccccc-
Q psy13746 170 STSSFLPS---VLSEHST-HRSQFIVAHPVNPP--YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTT-EIRGF- 241 (294)
Q Consensus 170 ~tSt~~~~---~ia~~l~-~~~~~ig~h~~~p~--~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~-~~~g~- 241 (294)
.+ +..+. .+.+.+. ...+|+......|. ..+.+..+++|+. + ++++++++.+|++++++++ .+.+.
T Consensus 120 ~s-t~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i~vgg~~---~--~~~~~ll~~~g~~v~~~g~~~g~a~~ 193 (317)
T 4ezb_A 120 LN-SVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVAGRR---A--VEVAERLNALGMNLEAVGETPGQASS 193 (317)
T ss_dssp CC-SCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEEEEESTT---H--HHHHHHHHTTTCEEEEEESSTTHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEEEEeCCh---H--HHHHHHHHHhCCCeEEeCCCcCHHHH
Confidence 54 55544 3334443 23455543222232 2345666777742 3 8899999999999999963 12222
Q ss_pred --HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 242 --ALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 242 --v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
++|+++ .++++|++.++++.|++++.++.+...+.+..|
T Consensus 194 ~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~~~~~~ 238 (317)
T 4ezb_A 194 LKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETFPGLDW 238 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCccccH
Confidence 445544 357999999999999999655544433224443
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=158.44 Aligned_cols=216 Identities=14% Similarity=0.115 Sum_probs=141.0
Q ss_pred CCccceEEE--ccccHHHHHHHHHC-CC-eEEEEeCChH----HHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEE
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASA-GY-KVSLYDVLSE----QIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSL 82 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~-G~-~V~~~d~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (294)
+.++||+|| |.||.++|.+|+++ || +|++||++++ +++...+... +. ..
T Consensus 16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~---~i--------------------~~ 72 (478)
T 3g79_A 16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGES---PL--------------------KG 72 (478)
T ss_dssp CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCC---CS--------------------SC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCC---Cc--------------------cc
Confidence 567899999 99999999999999 99 9999999999 7776543110 00 00
Q ss_pred eecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch----------HHHHH
Q psy13746 83 YDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL----------QIKHQ 152 (294)
Q Consensus 83 ~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~----------~~k~~ 152 (294)
++ ..+.++++++. ..++++++++. +++++||+||+|+|++. .....
T Consensus 73 ~e--------------~gl~~l~~~~~---------~~g~l~~ttd~-ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~ 128 (478)
T 3g79_A 73 EE--------------PGLEELIGKVV---------KAGKFECTPDF-SRISELDAVTLAIQTPFANPKDLEPDFSALID 128 (478)
T ss_dssp CG--------------GGHHHHHHHHH---------HTTCEEEESCG-GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHH
T ss_pred cC--------------CCHHHHHHhhc---------ccCCeEEeCcH-HHHhcCCEEEEecCCchhccCCccccHHHHHH
Confidence 11 01111111110 12357888884 58999999999999863 22345
Q ss_pred HHHHHhcccCCCeEEEecCCCCCHHH---HHh-hc-C-CCCce-eeeee-cCCCCC--CC-------eEEEecCCCCCHH
Q psy13746 153 VYRAIDIFMSSNTILSSSTSSFLPSV---LSE-HS-T-HRSQF-IVAHP-VNPPYF--IP-------LVEIVPAAWTSER 215 (294)
Q Consensus 153 ~~~~l~~~~~~~~ii~s~tSt~~~~~---ia~-~l-~-~~~~~-ig~h~-~~p~~~--~~-------lveiv~g~~t~~e 215 (294)
..+++.++++++++|+ +.||+++.. +.+ .+ . .+.++ ...++ .+|... +. ...|+.| .+++
T Consensus 129 ~~~~i~~~l~~g~iVV-~~STv~pgtt~~v~~~ile~~~g~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~ 205 (478)
T 3g79_A 129 GIRNVGKYLKPGMLVV-LESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREHDRIVGG--IDEA 205 (478)
T ss_dssp HHHHHHHHCCTTCEEE-ECSCCCTTTTTTHHHHHHHHHHCCCBTTTBEEEECCCCCCTTSHHHHHHHSCEEEEE--SSHH
T ss_pred HHHHHHhhcCCCcEEE-EeCCCChHHHHHHHHHHHHHhcCCCcCCceeEEeCCccCCccchhhhhcCCcEEEEe--CCHH
Confidence 6678999999999887 456776652 322 11 1 11000 00112 234322 11 1135555 4788
Q ss_pred HHHHHHHHHHHc-CCeeEEEcccccc---cHHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHccc
Q psy13746 216 VITRTREIMTEI-GMKPVTLTTEIRG---FALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEGL 276 (294)
Q Consensus 216 ~~~~~~~ll~~l-G~~~v~v~~~~~g---~v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g~ 276 (294)
..++++++++.+ +..+++++.-..+ .++|+++ .+++||+..++++.|+|+.++.+++....
T Consensus 206 ~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~ 274 (478)
T 3g79_A 206 STKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAINQLALYCEAMGINVYDVRTGVDSLK 274 (478)
T ss_dssp HHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc
Confidence 899999999999 8888888532222 2455554 35899999999999999999999987544
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-17 Score=153.43 Aligned_cols=209 Identities=18% Similarity=0.144 Sum_probs=139.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
-+|+|| |.||.++|.+|+++||+|++||+++++++...+... +. |+..
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~---~~----------------------~epg----- 58 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVM---PI----------------------YEPG----- 58 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCC---SS----------------------CCTT-----
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCC---Cc----------------------cCCC-----
Confidence 489999 999999999999999999999999999887643211 11 1111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH---------HHHHHHHHHhcccC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ---------IKHQVYRAIDIFMS 162 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~---------~k~~~~~~l~~~~~ 162 (294)
+.+++++.. ..+++++++|+.+++++||+||.|+|.+.. ..+++++++.++++
T Consensus 59 ---------l~~~~~~~~---------~~g~l~~ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~ 120 (446)
T 4a7p_A 59 ---------LDALVASNV---------KAGRLSFTTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLT 120 (446)
T ss_dssp ---------HHHHHHHHH---------HTTCEEEESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCC
T ss_pred ---------HHHHHHhhc---------ccCCEEEECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcC
Confidence 111111110 113578899998899999999999987652 35677889999999
Q ss_pred CCeEEEecCCCCCHHH---HHhhcC--CCCceeeeee-cCCCC--CCCe--------EEEecCCCCCHHHHHHHHHHHHH
Q psy13746 163 SNTILSSSTSSFLPSV---LSEHST--HRSQFIVAHP-VNPPY--FIPL--------VEIVPAAWTSERVITRTREIMTE 226 (294)
Q Consensus 163 ~~~ii~s~tSt~~~~~---ia~~l~--~~~~~ig~h~-~~p~~--~~~l--------veiv~g~~t~~e~~~~~~~ll~~ 226 (294)
++++|++ .||+++.. +.+.+. .+. ...+. .+|.. .+.. ..++++ .+++..+.++++++.
T Consensus 121 ~g~iVV~-~STv~pgtt~~l~~~l~e~~~~--~d~~v~~~Pe~a~eG~a~~d~~~p~~ivvG~--~~~~~~~~~~~ly~~ 195 (446)
T 4a7p_A 121 KPSVIVT-KSTVPVGTGDEVERIIAEVAPN--SGAKVVSNPEFLREGAAIEDFKRPDRVVVGT--EDEFARQVMREIYRP 195 (446)
T ss_dssp SCCEEEE-CSCCCTTHHHHHHHHHHHHSTT--SCCEEEECCCCCCTTSHHHHHHSCSCEEEEC--SCHHHHHHHHHHHCS
T ss_pred CCCEEEE-eCCCCchHHHHHHHHHHHhCCC--CCceEEeCcccccccchhhhccCCCEEEEeC--CcHHHHHHHHHHHHH
Confidence 9999875 56776653 322221 111 11111 12321 1211 224444 358999999999999
Q ss_pred cCCe---eEEEcccccc---cHHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHcc
Q psy13746 227 IGMK---PVTLTTEIRG---FALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEG 275 (294)
Q Consensus 227 lG~~---~v~v~~~~~g---~v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g 275 (294)
++.. +++++.-..+ .++|+++ .+++||+..++++.|+|++++..++..+
T Consensus 196 ~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~GiD~~~v~~~~~~~ 254 (446)
T 4a7p_A 196 LSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGADVQEVSRGIGMD 254 (446)
T ss_dssp CC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTS
T ss_pred HhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 9875 5666422222 2444444 3579999999999999999999998764
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=153.40 Aligned_cols=164 Identities=15% Similarity=0.160 Sum_probs=124.2
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
..+++|+|| |.||++||..|+++|++|++||++++.++.+.+
T Consensus 6 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~------------------------------------ 49 (341)
T 3ktd_A 6 DISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVD------------------------------------ 49 (341)
T ss_dssp CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH------------------------------------
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH------------------------------------
Confidence 346799999 999999999999999999999999988775432
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhcc----CCcEEEEcCCcchHHHHHHHHHHhcccCCC
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE----DAIFIQESVPEILQIKHQVYRAIDIFMSSN 164 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~----~aDlVieavpe~~~~k~~~~~~l~~~~~~~ 164 (294)
.| +..++++.++++ ++|+||.|+|.+ ....+++++.+. +++
T Consensus 50 ------------------~G--------------~~~~~~~~e~~~~a~~~aDlVilavP~~--~~~~vl~~l~~~-~~~ 94 (341)
T 3ktd_A 50 ------------------EG--------------FDVSADLEATLQRAAAEDALIVLAVPMT--AIDSLLDAVHTH-APN 94 (341)
T ss_dssp ------------------TT--------------CCEESCHHHHHHHHHHTTCEEEECSCHH--HHHHHHHHHHHH-CTT
T ss_pred ------------------cC--------------CeeeCCHHHHHHhcccCCCEEEEeCCHH--HHHHHHHHHHcc-CCC
Confidence 12 123456665554 579999999964 356888888886 788
Q ss_pred eEEEecCCCCC--HHHHHhhcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHH--------HHHHHHH
Q psy13746 165 TILSSSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSER--------VITRTRE 222 (294)
Q Consensus 165 ~ii~s~tSt~~--~~~ia~~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e--------~~~~~~~ 222 (294)
++|++.+|+.. .+.+.+.+. ..+|++.|||.++. .+..+.+++++.++++ .++++++
T Consensus 95 ~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~ 173 (341)
T 3ktd_A 95 NGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQ 173 (341)
T ss_dssp CCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHH
T ss_pred CEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHH
Confidence 99887665432 224444432 46899999998653 1346778888778888 8999999
Q ss_pred HHHHcCCeeEEEcccccccHHHHH
Q psy13746 223 IMTEIGMKPVTLTTEIRGFALNRI 246 (294)
Q Consensus 223 ll~~lG~~~v~v~~~~~g~v~nri 246 (294)
+++.+|+++++++++.++.+...+
T Consensus 174 l~~~~Ga~v~~~~~~~HD~~~A~v 197 (341)
T 3ktd_A 174 MALAVGAEVVPSRVGPHDAAAARV 197 (341)
T ss_dssp HHHHTTCEEEECCHHHHHHHHHHH
T ss_pred HHHHcCCEEEEeCHHHHHHHHHHH
Confidence 999999999999777777655544
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=144.64 Aligned_cols=194 Identities=13% Similarity=0.076 Sum_probs=138.3
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCC----CeEEEEeCChH--HHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeE
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAG----YKVSLYDVLSE--QIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVS 81 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G----~~V~~~d~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (294)
.|+.++|+|| |.||.+||..|+++| ++|++||++++ +++.+.+
T Consensus 19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~----------------------------- 69 (322)
T 2izz_A 19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRK----------------------------- 69 (322)
T ss_dssp ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHH-----------------------------
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHH-----------------------------
Confidence 3455789999 999999999999999 89999999986 5543321
Q ss_pred EeecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhccc
Q psy13746 82 LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFM 161 (294)
Q Consensus 82 ~~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~ 161 (294)
.| +..+++..++++++|+||.|+|.. ...+++.++.+.+
T Consensus 70 -------------------------~G--------------~~~~~~~~e~~~~aDvVilav~~~--~~~~vl~~l~~~l 108 (322)
T 2izz_A 70 -------------------------MG--------------VKLTPHNKETVQHSDVLFLAVKPH--IIPFILDEIGADI 108 (322)
T ss_dssp -------------------------HT--------------CEEESCHHHHHHHCSEEEECSCGG--GHHHHHHHHGGGC
T ss_pred -------------------------cC--------------CEEeCChHHHhccCCEEEEEeCHH--HHHHHHHHHHhhc
Confidence 12 345567777889999999999954 3567888999888
Q ss_pred CCCeEEEecCCCCCHHHHHhhcCC---CCceeeeeecCCCCCCCeEE-EecCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 162 SSNTILSSSTSSFLPSVLSEHSTH---RSQFIVAHPVNPPYFIPLVE-IVPAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 162 ~~~~ii~s~tSt~~~~~ia~~l~~---~~~~ig~h~~~p~~~~~lve-iv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
+++++|++.+++++++.+++.+.. ..++++.+|..|........ +++++.++++.++.++++|+.+|..++ +..+
T Consensus 109 ~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~~v~~~g~~~~~~~~~~v~~ll~~~G~~~~-~~e~ 187 (322)
T 2izz_A 109 EDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTE-VEED 187 (322)
T ss_dssp CTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEE-CCGG
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhCCCEEE-eCHH
Confidence 889999888778888777766542 35788999988876554333 456766779999999999999997654 4322
Q ss_pred cccc------HHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHcc
Q psy13746 238 IRGF------ALNRIQFAVLNECYH-LVHDGVLSAKDIDRVMSEG 275 (294)
Q Consensus 238 ~~g~------v~nri~~a~~~Ea~~-l~~~~~~~~~~id~a~~~g 275 (294)
.... ..+.++. .+.|++. .+.+.|+++++...++..+
T Consensus 188 ~~~~~~a~~g~gpa~~~-~~~eala~a~~~~Gl~~~~a~~l~~~~ 231 (322)
T 2izz_A 188 LIDAVTGLSGSGPAYAF-TALDALADGGVKMGLPRRLAVRLGAQA 231 (322)
T ss_dssp GHHHHHHHTTTHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2211 1122222 3445553 3466688998877776553
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.6e-17 Score=154.02 Aligned_cols=202 Identities=13% Similarity=0.176 Sum_probs=141.7
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||.+||..|+++|++|++||+++++++.+.+.
T Consensus 2 ~~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~----------------------------------- 46 (484)
T 4gwg_A 2 NAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN----------------------------------- 46 (484)
T ss_dssp -CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT-----------------------------------
T ss_pred CCCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-----------------------------------
Confidence 345799999 9999999999999999999999999987765431
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhcc---CCcEEEEcCCcchHHHHHHHHHHhcccCCCe
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE---DAIFIQESVPEILQIKHQVYRAIDIFMSSNT 165 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~---~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ 165 (294)
|.. + .++..+.+++++++ ++|+||.|+|.+..+ +.+++++.+.++++.
T Consensus 47 -------------------g~~-g--------~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~L~~g~ 97 (484)
T 4gwg_A 47 -------------------EAK-G--------TKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV-DDFIEKLVPLLDTGD 97 (484)
T ss_dssp -------------------TTT-T--------SSCEECSSHHHHHHTBCSSCEEEECSCSSHHH-HHHHHHHGGGCCTTC
T ss_pred -------------------ccC-C--------CceeccCCHHHHHhhccCCCEEEEecCChHHH-HHHHHHHHHhcCCCC
Confidence 100 0 12445677777665 599999999997554 457789999999999
Q ss_pred EEEecCCCCCHH--HHHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCee-------E
Q psy13746 166 ILSSSTSSFLPS--VLSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKP-------V 232 (294)
Q Consensus 166 ii~s~tSt~~~~--~ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~-------v 232 (294)
+|++.+++.+.+ .+.+.+. +..+|++......+ ..+. . +++| ++++.++.++++|+.+|.++ +
T Consensus 98 iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~-im~G--G~~ea~~~v~pll~~ig~~v~~~~~~~~ 173 (484)
T 4gwg_A 98 IIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-S-LMPG--GNKEAWPHIKTIFQGIAAKVGTGEPCCD 173 (484)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-E-EEEE--ECGGGHHHHHHHHHHHSCBCTTSCBSBC
T ss_pred EEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-e-eecC--CCHHHHHHHHHHHHHhcCcccCCCceEE
Confidence 998766554323 3333332 34456664222211 1233 3 4444 37899999999999999987 7
Q ss_pred EEccccccc---HHHHHH----HHHHHHHHHHHHc-CCCCHHHHHHHH---HcccCCCc
Q psy13746 233 TLTTEIRGF---ALNRIQ----FAVLNECYHLVHD-GVLSAKDIDRVM---SEGLGLRY 280 (294)
Q Consensus 233 ~v~~~~~g~---v~nri~----~a~~~Ea~~l~~~-~~~~~~~id~a~---~~g~g~~~ 280 (294)
++++.+.|. ++|+.+ ...++|++.++++ .+++++++..++ ..|.+.+|
T Consensus 174 ~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~ 232 (484)
T 4gwg_A 174 WVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSF 232 (484)
T ss_dssp CCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBH
T ss_pred EECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccch
Confidence 776544443 445444 3578999999999 899999988775 45655554
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-18 Score=156.99 Aligned_cols=194 Identities=13% Similarity=0.142 Sum_probs=147.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||.++|..++.+|+ +|++||+++++++.....+.+
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~---------------------------------- 50 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITH---------------------------------- 50 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHH----------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHh----------------------------------
Confidence 589999 9999999999999998 999999999877642111110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--------------CcchHHHHHHHHH
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--------------PEILQIKHQVYRA 156 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--------------pe~~~~k~~~~~~ 156 (294)
... .. ....+++.++++ +++++||+||+|+ +++..++++++++
T Consensus 51 ---------~~~-~~------------~~~~~i~~t~d~-~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~ 107 (317)
T 2ewd_A 51 ---------SMV-MF------------GSTSKVIGTDDY-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEG 107 (317)
T ss_dssp ---------HHH-HH------------TCCCCEEEESCG-GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHH
T ss_pred ---------hhh-hc------------CCCcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHH
Confidence 000 00 011346677888 5899999999999 7888899999999
Q ss_pred HhcccCCCeEE--EecCCCCCHHHHHhhcCC-CCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q psy13746 157 IDIFMSSNTIL--SSSTSSFLPSVLSEHSTH-RSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT 233 (294)
Q Consensus 157 l~~~~~~~~ii--~s~tSt~~~~~ia~~l~~-~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~ 233 (294)
+.++++ ++++ ++|++.+....+.+.... |.|++|+ .|..++......+.+.+|..+
T Consensus 108 i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~------------------~t~ld~~r~~~~la~~lg~~~-- 166 (317)
T 2ewd_A 108 VKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM------------------AGVLDSSRFRTFIAQHFGVNA-- 166 (317)
T ss_dssp HHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES------------------CHHHHHHHHHHHHHHHHTSCG--
T ss_pred HHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec------------------cCcHHHHHHHHHHHHHhCcCh--
Confidence 999875 7766 566555544455555554 5677764 257788888888889999762
Q ss_pred EcccccccHHHH---HHHHHHHHH-------HHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 234 LTTEIRGFALNR---IQFAVLNEC-------YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 234 v~~~~~g~v~nr---i~~a~~~Ea-------~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
.+.+|++.|+ .+.++++++ ..+++++.++.+++|++++.+ + +|||+++|..|
T Consensus 167 --~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~---~---~~~~ei~~~~g 228 (317)
T 2ewd_A 167 --SDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHT---R---IAWKEVADNLK 228 (317)
T ss_dssp --GGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHH---H---HHHHHHHHHHS
T ss_pred --hhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHH---H---hhHHHHHHhhc
Confidence 5788999988 888888888 888899888999999999864 4 79999999643
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=150.35 Aligned_cols=204 Identities=16% Similarity=0.196 Sum_probs=136.6
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
+..+++|+|| |.||.++|..|++ |++|++||+++++++.+.+.+. +.| +
T Consensus 33 ~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~---~i~----------------------e--- 83 (432)
T 3pid_A 33 GSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKIS---PIV----------------------D--- 83 (432)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCC---SSC----------------------C---
T ss_pred ccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCC---ccc----------------------c---
Confidence 4556799999 9999999999998 9999999999999887654321 111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch---------HHHHHHHHHHh
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL---------QIKHQVYRAID 158 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~---------~~k~~~~~~l~ 158 (294)
..++++++.+ ..++++++|+.+++++||+||+|+|++. .....+.+++.
T Consensus 84 -----------~~l~~ll~~~-----------~~~l~~ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~ 141 (432)
T 3pid_A 84 -----------KEIQEYLAEK-----------PLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVT 141 (432)
T ss_dssp -----------HHHHHHHHHS-----------CCCEEEESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHH
T ss_pred -----------ccHHHHHhhc-----------cCCeEEEcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHH
Confidence 1222222221 1347889999889999999999999974 23456778888
Q ss_pred cccCCCeEEEecCCCCCHH---HHHhhcCCCCceeeeeecCCCCCCC------eE---EEecCCCCCHHHHHHHHHHHHH
Q psy13746 159 IFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPYFIP------LV---EIVPAAWTSERVITRTREIMTE 226 (294)
Q Consensus 159 ~~~~~~~ii~s~tSt~~~~---~ia~~l~~~~~~ig~h~~~p~~~~~------lv---eiv~g~~t~~e~~~~~~~ll~~ 226 (294)
+ ++++++|+ ..||+++. ++.+.+. ...+ . ++|....+ .+ .|+.| .+++..+++.+++..
T Consensus 142 ~-l~~g~iVV-~~STv~pgtt~~l~~~l~--~~~v--~-~sPe~~~~G~A~~~~l~p~rIvvG--~~~~~~~~~~~ll~~ 212 (432)
T 3pid_A 142 E-INPNAVMI-IKSTIPVGFTRDIKERLG--IDNV--I-FSPEFLREGRALYDNLHPSRIVIG--ERSARAERFADLLKE 212 (432)
T ss_dssp H-HCTTSEEE-ECSCCCTTHHHHHHHHHT--CCCE--E-ECCCCCCTTSHHHHHHSCSCEEES--SCSHHHHHHHHHHHH
T ss_pred h-cCCCcEEE-EeCCCChHHHHHHHHHHh--hccE--e-ecCccCCcchhhhcccCCceEEec--CCHHHHHHHHHHHHh
Confidence 8 88999887 46777665 3444332 1222 2 25543221 11 24444 255678889999987
Q ss_pred --cCC-eeEEEcccccc---cHHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 227 --IGM-KPVTLTTEIRG---FALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 227 --lG~-~~v~v~~~~~g---~v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
++. .+++++.-..+ .++++++ .+++||+..++++.|+|+.++.+++.
T Consensus 213 ~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~GiD~~~v~~~~~ 269 (432)
T 3pid_A 213 GAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQIIEGVC 269 (432)
T ss_dssp HCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHc
Confidence 553 34555422222 1344444 35899999999999999999999986
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=144.95 Aligned_cols=194 Identities=12% Similarity=0.087 Sum_probs=140.9
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
+.+++|+|| |.||+.+|..|++.|++|++||+++++++++.+
T Consensus 28 ~~~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~------------------------------------ 71 (316)
T 2uyy_A 28 PTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ------------------------------------ 71 (316)
T ss_dssp CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH------------------------------------
T ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH------------------------------------
Confidence 345789999 999999999999999999999999987664321
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHH---HhcccCCCe
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRA---IDIFMSSNT 165 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~---l~~~~~~~~ 165 (294)
.| +....++.++++++|+||+|+|++..++. ++.+ +.+.+.+++
T Consensus 72 ------------------~g--------------~~~~~~~~~~~~~~DvVi~av~~~~~~~~-v~~~~~~~~~~l~~~~ 118 (316)
T 2uyy_A 72 ------------------EG--------------ARLGRTPAEVVSTCDITFACVSDPKAAKD-LVLGPSGVLQGIRPGK 118 (316)
T ss_dssp ------------------TT--------------CEECSCHHHHHHHCSEEEECCSSHHHHHH-HHHSTTCGGGGCCTTC
T ss_pred ------------------cC--------------CEEcCCHHHHHhcCCEEEEeCCCHHHHHH-HHcCchhHhhcCCCCC
Confidence 12 23456777788999999999997666544 4443 336677888
Q ss_pred EEEecCCCCCH---HHHHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 166 ILSSSTSSFLP---SVLSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 166 ii~s~tSt~~~---~~ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
+|++.+ +..+ ..+.+.+. ++.++++.+.+.++ ..+.+..++++ +++.++.++++|+.+|.++++++...
T Consensus 119 ~vv~~s-~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~~ 194 (316)
T 2uyy_A 119 CYVDMS-TVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAG---DRGLYEDCSSCFQAMGKTSFFLGEVG 194 (316)
T ss_dssp EEEECS-CCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEE---CHHHHHHTHHHHHHHEEEEEECSSTT
T ss_pred EEEECC-CCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCC---CHHHHHHHHHHHHHhcCCEEEeCCCC
Confidence 877544 3433 34555553 46678887655432 23556666666 67899999999999999988874222
Q ss_pred cc----cHHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHcccC
Q psy13746 239 RG----FALNRI---QFAVLNECYHLVHDGVLSAKDIDRVMSEGLG 277 (294)
Q Consensus 239 ~g----~v~nri---~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g 277 (294)
.+ .+.|.+ +..+++|++.++++.|+++++++.++..+.+
T Consensus 195 ~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~ 240 (316)
T 2uyy_A 195 NAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQL 240 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 22 245555 3568999999999999999999999887544
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-17 Score=145.12 Aligned_cols=190 Identities=19% Similarity=0.203 Sum_probs=135.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|++.|++|++||+++++++.+.+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--------------------------------------- 41 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQD--------------------------------------- 41 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHT---------------------------------------
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---------------------------------------
Confidence 379999 999999999999999999999999987664321
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHH---HhcccCCCeEEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRA---IDIFMSSNTILS 168 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~---l~~~~~~~~ii~ 168 (294)
.| ++.++++.++++++|+||.|+|.+..++ .++.+ +.+.++++++|+
T Consensus 42 ---------------~g--------------~~~~~~~~~~~~~~Dvvi~~vp~~~~~~-~v~~~~~~~~~~l~~~~~vv 91 (296)
T 2gf2_A 42 ---------------AG--------------EQVVSSPADVAEKADRIITMLPTSINAI-EAYSGANGILKKVKKGSLLI 91 (296)
T ss_dssp ---------------TT--------------CEECSSHHHHHHHCSEEEECCSSHHHHH-HHHHSTTSGGGTCCTTCEEE
T ss_pred ---------------cC--------------CeecCCHHHHHhcCCEEEEeCCCHHHHH-HHHhCchhHHhcCCCCCEEE
Confidence 12 3456778878899999999998876554 34544 344677888888
Q ss_pred ecCCCCCHHHHHh---hcCCCCceeeeeecC-CCCC------CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 169 SSTSSFLPSVLSE---HSTHRSQFIVAHPVN-PPYF------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 169 s~tSt~~~~~ia~---~l~~~~~~ig~h~~~-p~~~------~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
+ +|++.+..+.. .+... +.++.+ |... ...+.++.+ ++++.++.++++|+.+|.++++++..+
T Consensus 92 ~-~s~~~~~~~~~~~~~~~~~----g~~~~~~p~~~g~~~a~~~~~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g 164 (296)
T 2gf2_A 92 D-SSTIDPAVSKELAKEVEKM----GAVFMDAPVSGGVGAARSGNLTFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVG 164 (296)
T ss_dssp E-CSCCCHHHHHHHHHHHHHT----TCEEEECCEESHHHHHHHTCEEEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTT
T ss_pred E-CCCCCHHHHHHHHHHHHHc----CCEEEEcCCCCChhHHhcCcEEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCcc
Confidence 7 78888765443 22211 223322 2211 122334444 368889999999999999988885433
Q ss_pred ccc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCC
Q psy13746 239 RGF---ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLR 279 (294)
Q Consensus 239 ~g~---v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~ 279 (294)
.+. +.|+.+. .+++|++.++++.|+++++++.++..+.|.+
T Consensus 165 ~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~ 212 (296)
T 2gf2_A 165 TGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRC 212 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccC
Confidence 332 3455543 4799999999999999999999998766543
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-16 Score=141.32 Aligned_cols=192 Identities=18% Similarity=0.219 Sum_probs=136.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|++.|++|++||+++++.+...+
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--------------------------------------- 46 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA--------------------------------------- 46 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH---------------------------------------
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH---------------------------------------
Confidence 489999 999999999999999999999999987665322
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s 169 (294)
.| +..++++.++++++|+||.|+|.+..++..++ +++.+.++++++|++
T Consensus 47 ---------------~g--------------~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~ 97 (299)
T 1vpd_A 47 ---------------AG--------------AETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLID 97 (299)
T ss_dssp ---------------TT--------------CEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEE
T ss_pred ---------------CC--------------CeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEE
Confidence 12 34567787788999999999997766544333 467777888998876
Q ss_pred cCCCCC--HHHHHhhcCC-CCceeeeeecCC--C--CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc-
Q psy13746 170 STSSFL--PSVLSEHSTH-RSQFIVAHPVNP--P--YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF- 241 (294)
Q Consensus 170 ~tSt~~--~~~ia~~l~~-~~~~ig~h~~~p--~--~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~- 241 (294)
.+++.+ ...+.+.+.. ...|+.. |+.+ + ..+.+..++.+ +++.++.++++|+.+|.++++++....+.
T Consensus 98 ~s~~~~~~~~~l~~~~~~~g~~~~~~-pv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~ 173 (299)
T 1vpd_A 98 MSSIAPLASREISDALKAKGVEMLDA-PVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLMKAMAGSVVHTGDIGAGNV 173 (299)
T ss_dssp CSCCCHHHHHHHHHHHHTTTCEEEEC-CEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHTTEEEEEEEESTTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEe-cCCCCHhHHhcCCEEEEeCC---CHHHHHHHHHHHHHHcCCeEEeCCcCHHHH
Confidence 544432 2355555532 2334433 2211 1 11223334444 78999999999999999998886555554
Q ss_pred --HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccC
Q psy13746 242 --ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLG 277 (294)
Q Consensus 242 --v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g 277 (294)
+.|+.+. ..++|++.++++.|+++++++.++..+.+
T Consensus 174 ~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~ 215 (299)
T 1vpd_A 174 TKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLA 215 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Confidence 3344443 57899999999999999999999886654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=150.14 Aligned_cols=211 Identities=15% Similarity=0.121 Sum_probs=139.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||.++|.+|+++|++|++||+++++++...+... +.| +..-+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~---~i~----------------------e~gl~--- 54 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTI---PIY----------------------EPGLE--- 54 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCS---CCC----------------------STTHH---
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCC---ccc----------------------CCCHH---
Confidence 589999 999999999999999999999999999887654211 111 10000
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH--------HHHHHHHHHhcccCC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ--------IKHQVYRAIDIFMSS 163 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~--------~k~~~~~~l~~~~~~ 163 (294)
..+.+.+. .+++++++|+.+++++||+||.|+|.+.. ...++++++.+++++
T Consensus 55 -------~~l~~~~~-------------~~~l~~t~d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~ 114 (450)
T 3gg2_A 55 -------KMIARNVK-------------AGRLRFGTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSR 114 (450)
T ss_dssp -------HHHHHHHH-------------TTSEEEESCHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS
T ss_pred -------HHHHhhcc-------------cCcEEEECCHHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCC
Confidence 11111111 13478889999889999999999998742 456788999999999
Q ss_pred CeEEEecCCCCCHHH---HHhhcCC--CCce--eeeee-cCCCCC--CCe--------EEEecCCCCCHHHHHHHHHHHH
Q psy13746 164 NTILSSSTSSFLPSV---LSEHSTH--RSQF--IVAHP-VNPPYF--IPL--------VEIVPAAWTSERVITRTREIMT 225 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~---ia~~l~~--~~~~--ig~h~-~~p~~~--~~l--------veiv~g~~t~~e~~~~~~~ll~ 225 (294)
+++|++ .||+++.. +.+.+.. +... ...+. .+|... +.. ..++++ .+++..+.++++++
T Consensus 115 g~iVV~-~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~eG~~~~~~~~p~~ivvG~--~~~~~~~~~~~l~~ 191 (450)
T 3gg2_A 115 YILIVT-KSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVVVGV--DSDRARELITSLYK 191 (450)
T ss_dssp CEEEEE-CSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHT
T ss_pred CCEEEE-eeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhhcccchhhhccCCCEEEEEc--CCHHHHHHHHHHHH
Confidence 998875 45665542 3322210 0000 01111 133321 222 224444 36899999999999
Q ss_pred HcCC--eeEEEccccc----ccHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHcc
Q psy13746 226 EIGM--KPVTLTTEIR----GFALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMSEG 275 (294)
Q Consensus 226 ~lG~--~~v~v~~~~~----g~v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~~g 275 (294)
.++. .+++++.-.. +++.|.+. .+++||+..++++.|+|++++..++...
T Consensus 192 ~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 250 (450)
T 3gg2_A 192 PMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERVGADVSMVRLGIGSD 250 (450)
T ss_dssp TTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTS
T ss_pred HHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHcCC
Confidence 9987 3566642222 23444433 3579999999999999999999999865
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=151.11 Aligned_cols=207 Identities=13% Similarity=0.116 Sum_probs=137.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
.|.+|| |.||.++|.+|+++||+|++||+++++++...+... + +++..-+
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~---p----------------------i~epgl~--- 63 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQI---S----------------------IEEPGLQ--- 63 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCC---S----------------------SCCTTHH---
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCC---C----------------------cCCCCHH---
Confidence 588999 999999999999999999999999999887654211 1 1111110
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH----------HHHHHHHHHhccc
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ----------IKHQVYRAIDIFM 161 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~----------~k~~~~~~l~~~~ 161 (294)
+.+++.+.. +++++++++ ++||+||.|+|.+.. ......+++.+++
T Consensus 64 -------~ll~~~~~~-------------g~l~~ttd~----~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l 119 (431)
T 3ojo_A 64 -------EVYEEVLSS-------------GKLKVSTTP----EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFL 119 (431)
T ss_dssp -------HHHHHHHHT-------------TCEEEESSC----CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGC
T ss_pred -------HHHHhhccc-------------CceEEeCch----hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhC
Confidence 111111111 346777763 589999999998762 2345567899999
Q ss_pred CCCeEEEecCCCCCHHHHHhh----cC-CCCce-eeeee-cCCCCC--CC-------eEEEecCCCCCHHHHHHHHHHHH
Q psy13746 162 SSNTILSSSTSSFLPSVLSEH----ST-HRSQF-IVAHP-VNPPYF--IP-------LVEIVPAAWTSERVITRTREIMT 225 (294)
Q Consensus 162 ~~~~ii~s~tSt~~~~~ia~~----l~-~~~~~-ig~h~-~~p~~~--~~-------lveiv~g~~t~~e~~~~~~~ll~ 225 (294)
+++++|+ ..||+++....+. +. .+.++ ...++ .+|... +. ...|+.| .+++..++++++++
T Consensus 120 ~~g~iVV-~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G~A~~~~~~p~~Iv~G--~~~~~~~~~~~ly~ 196 (431)
T 3ojo_A 120 KKGNTII-VESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIGG--VTKACIEAGKRVYR 196 (431)
T ss_dssp CTTEEEE-ECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHT
T ss_pred CCCCEEE-EecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCCCcchhhcccCCCEEEEe--CCHHHHHHHHHHHH
Confidence 9999887 4667776643221 11 11110 00112 234321 11 1135655 37899999999999
Q ss_pred HcCCeeEEEccccccc---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHcc
Q psy13746 226 EIGMKPVTLTTEIRGF---ALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEG 275 (294)
Q Consensus 226 ~lG~~~v~v~~~~~g~---v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g 275 (294)
.++..+++++.-..+. ++|+++ .+++||+..++++.|+|+.++.+++...
T Consensus 197 ~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~ 253 (431)
T 3ojo_A 197 TFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKH 253 (431)
T ss_dssp TTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccC
Confidence 9998887775323332 455555 3589999999999999999999998753
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-16 Score=139.78 Aligned_cols=192 Identities=17% Similarity=0.211 Sum_probs=138.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|++.|++|++||+++++++...+
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--------------------------------------- 45 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA--------------------------------------- 45 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHT---------------------------------------
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH---------------------------------------
Confidence 589999 999999999999999999999999987664321
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s 169 (294)
.| +...+++.++++++|+||.|+|.+..++..+. .++.+.++++++|++
T Consensus 46 ---------------~g--------------~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~ 96 (301)
T 3cky_A 46 ---------------QG--------------AQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVD 96 (301)
T ss_dssp ---------------TT--------------CEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEE
T ss_pred ---------------CC--------------CeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEE
Confidence 12 34456787788899999999998776554443 267778888999887
Q ss_pred cCCCC--CHHHHHhhcCC-CCceeeeeecCCCC----CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc-
Q psy13746 170 STSSF--LPSVLSEHSTH-RSQFIVAHPVNPPY----FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF- 241 (294)
Q Consensus 170 ~tSt~--~~~~ia~~l~~-~~~~ig~h~~~p~~----~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~- 241 (294)
.+++. ....+.+.+.. ..+++.. |+.+.. .+.+..++++ +++.++.++++|+.+|.++++++....+.
T Consensus 97 ~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~ 172 (301)
T 3cky_A 97 MSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAGTLTIMVGA---SEAVFEKIQPVLSVIGKDIYHVGDTGAGDA 172 (301)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcCCeEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHH
Confidence 76655 23355555432 2344432 222111 1333445554 78899999999999999988886445554
Q ss_pred ---HHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHcccC
Q psy13746 242 ---ALNRI---QFAVLNECYHLVHDGVLSAKDIDRVMSEGLG 277 (294)
Q Consensus 242 ---v~nri---~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g 277 (294)
+.|.+ +..+++|++.++++.|++++++..++..+.+
T Consensus 173 ~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~ 214 (301)
T 3cky_A 173 VKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSG 214 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 34544 2357999999999999999999999886543
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=142.26 Aligned_cols=190 Identities=13% Similarity=0.101 Sum_probs=134.7
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
+++|+|| |.||+++|..|+++|++|++||++++.++.+.+
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~------------------------------------- 53 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG------------------------------------- 53 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-------------------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-------------------------------------
Confidence 4689999 779999999999999999999999987665422
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| +..+ +..++++++|+||+|+|++. ..++++++.+.++++++|++
T Consensus 54 -----------------~g--------------~~~~-~~~~~~~~aDvVi~av~~~~--~~~v~~~l~~~l~~~~ivv~ 99 (286)
T 3c24_A 54 -----------------MG--------------IPLT-DGDGWIDEADVVVLALPDNI--IEKVAEDIVPRVRPGTIVLI 99 (286)
T ss_dssp -----------------TT--------------CCCC-CSSGGGGTCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEE
T ss_pred -----------------cC--------------CCcC-CHHHHhcCCCEEEEcCCchH--HHHHHHHHHHhCCCCCEEEE
Confidence 12 1122 45567899999999999876 46888999998999999987
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCC--------C--CC------eEEEecCCCCCHHHHHHHHHHHHHcCC---e
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPY--------F--IP------LVEIVPAAWTSERVITRTREIMTEIGM---K 230 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~--------~--~~------lveiv~g~~t~~e~~~~~~~ll~~lG~---~ 230 (294)
.+++.+.+.+++ .....++++.||+.|.. . +. ...++.+..++++.++.++++++.+|. +
T Consensus 100 ~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~ 178 (286)
T 3c24_A 100 LDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTR 178 (286)
T ss_dssp SCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEE
T ss_pred CCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHHHHHHHHHHHhcCCcce
Confidence 555554444443 22346899999998764 2 21 122332223688999999999999999 8
Q ss_pred eEEEcccccccH----HHHHHH---HHHHHHHHHHHcC-CCCHHHHHHHHHc
Q psy13746 231 PVTLTTEIRGFA----LNRIQF---AVLNECYHLVHDG-VLSAKDIDRVMSE 274 (294)
Q Consensus 231 ~v~v~~~~~g~v----~nri~~---a~~~Ea~~l~~~~-~~~~~~id~a~~~ 274 (294)
+++++.+..+.+ .|.... ..+.|++..+... |++++++.+++..
T Consensus 179 ~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~ 230 (286)
T 3c24_A 179 THRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIG 230 (286)
T ss_dssp EEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred EEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888864444433 332332 3466777555554 8899888776654
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.5e-16 Score=135.04 Aligned_cols=189 Identities=9% Similarity=0.088 Sum_probs=135.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|++.|++|.+||+++++++...+..
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~------------------------------------- 46 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------------------------------------- 46 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-------------------------------------
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc-------------------------------------
Confidence 589999 99999999999999999999999998876543210
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
| +..++++.++++++|+||.|+|... ..+++.++ .+++++++.+
T Consensus 47 ----------------g--------------~~~~~~~~~~~~~~D~Vi~~v~~~~--~~~v~~~l----~~~~~vv~~~ 90 (259)
T 2ahr_A 47 ----------------A--------------LPYAMSHQDLIDQVDLVILGIKPQL--FETVLKPL----HFKQPIISMA 90 (259)
T ss_dssp ----------------T--------------CCBCSSHHHHHHTCSEEEECSCGGG--HHHHHTTS----CCCSCEEECC
T ss_pred ----------------C--------------CEeeCCHHHHHhcCCEEEEEeCcHh--HHHHHHHh----ccCCEEEEeC
Confidence 2 2345678778889999999999543 34555443 3677888887
Q ss_pred CCCCHHHHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHH------H
Q psy13746 172 SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFAL------N 244 (294)
Q Consensus 172 St~~~~~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~------n 244 (294)
++++++.+++.+....+++..+|..|..... .+.++++..++++.++.++++|+.+| .+++++.+..+.+. |
T Consensus 91 ~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~ 169 (259)
T 2ahr_A 91 AGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFG-STFDISEKDFDTFTALAGSSP 169 (259)
T ss_dssp TTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHH
T ss_pred CCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCC-CEEEecHHHccHHHHHhccHH
Confidence 8888888888776555777777766654443 55677777789999999999999999 67777533222211 2
Q ss_pred HHHHHHHHHHH-HHHHcCCCCHHHHHHHHHcccC
Q psy13746 245 RIQFAVLNECY-HLVHDGVLSAKDIDRVMSEGLG 277 (294)
Q Consensus 245 ri~~a~~~Ea~-~l~~~~~~~~~~id~a~~~g~g 277 (294)
..+..++ +++ ..+.+.+++++++.+++..++.
T Consensus 170 ~~~~~~~-~~la~~~~~~Gl~~~~~~~~~~~~~~ 202 (259)
T 2ahr_A 170 AYIYLFI-EALAKAGVKNGIPKAKALEIVTQTVL 202 (259)
T ss_dssp HHHHHHH-HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2232222 333 3467788899998887765443
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-15 Score=135.03 Aligned_cols=187 Identities=14% Similarity=0.099 Sum_probs=131.0
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.||+.+|..|+++| ++|++||++++++++..+.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~------------------------------------- 43 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE------------------------------------- 43 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH-------------------------------------
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh-------------------------------------
Confidence 379999 999999999999999 9999999999887654321
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| +..+.++.+++ ++|+||+|+|. .. ..+++.++.+ + +++|++.
T Consensus 44 ----------------~g--------------~~~~~~~~~~~-~~D~vi~~v~~-~~-~~~v~~~l~~--~-~~ivv~~ 87 (263)
T 1yqg_A 44 ----------------LG--------------VETSATLPELH-SDDVLILAVKP-QD-MEAACKNIRT--N-GALVLSV 87 (263)
T ss_dssp ----------------TC--------------CEEESSCCCCC-TTSEEEECSCH-HH-HHHHHTTCCC--T-TCEEEEC
T ss_pred ----------------cC--------------CEEeCCHHHHh-cCCEEEEEeCc-hh-HHHHHHHhcc--C-CCEEEEe
Confidence 02 24456676778 99999999993 33 4566666655 4 8888888
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-cccccc------H
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLT-TEIRGF------A 242 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~-~~~~g~------v 242 (294)
+++++++.+++.++.+.+++...|..|..... ...++.+..++++.++.++++|+.+|..+ +++ .+.... .
T Consensus 88 ~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~al~g~ 166 (263)
T 1yqg_A 88 AAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTV-WLDDEEKMHGITGISGS 166 (263)
T ss_dssp CTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEE-ECSSTTHHHHHHHHTTS
T ss_pred cCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCEE-EeCChhhccHHHHHHcc
Confidence 88998888888776555788875544544433 45677777779999999999999999876 774 221110 1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHc
Q psy13746 243 LNRIQFAVLNECYHLVHDGVLSAKDIDRVMSE 274 (294)
Q Consensus 243 ~nri~~a~~~Ea~~l~~~~~~~~~~id~a~~~ 274 (294)
.+..+..++......+.+.|++++++...+..
T Consensus 167 ~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~ 198 (263)
T 1yqg_A 167 GPAYVFYLLDALQNAAIRQGFDMAEARALSLA 198 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12222222222223366778899888777654
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=140.31 Aligned_cols=187 Identities=16% Similarity=0.184 Sum_probs=134.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|++.|++|++|| +++++++..+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~--------------------------------------- 43 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLS--------------------------------------- 43 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHT---------------------------------------
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH---------------------------------------
Confidence 589999 9999999999999999999999 8877554321
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH---HHhcccCCCeEEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR---AIDIFMSSNTILS 168 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~---~l~~~~~~~~ii~ 168 (294)
.| +...+++.++++++|+||.|+|.+..++. ++. ++.+.++++++|+
T Consensus 44 ---------------~g--------------~~~~~~~~~~~~~~D~vi~~vp~~~~~~~-v~~~~~~l~~~l~~~~~vv 93 (295)
T 1yb4_A 44 ---------------LG--------------AVNVETARQVTEFADIIFIMVPDTPQVED-VLFGEHGCAKTSLQGKTIV 93 (295)
T ss_dssp ---------------TT--------------CBCCSSHHHHHHTCSEEEECCSSHHHHHH-HHHSTTSSTTSCCTTEEEE
T ss_pred ---------------cC--------------CcccCCHHHHHhcCCEEEEECCCHHHHHH-HHhCchhHhhcCCCCCEEE
Confidence 12 23456787788999999999998775544 444 6777788899888
Q ss_pred ecCCCCC--HHHHHhhcCCCCceeeeeecCCCC--------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 169 SSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPY--------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 169 s~tSt~~--~~~ia~~l~~~~~~ig~h~~~p~~--------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
+.+++.+ ...+.+.+.. .+.|+++.|. .+.+..++++ +++.++.++++|+.+|.++++++...
T Consensus 94 ~~s~~~~~~~~~l~~~~~~----~g~~~~~~p~~~~~~~a~~g~~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~ 166 (295)
T 1yb4_A 94 DMSSISPIETKRFAQRVNE----MGADYLDAPVSGGEIGAREGTLSIMVGG---EQKVFDRVKPLFDILGKNITLVGGNG 166 (295)
T ss_dssp ECSCCCHHHHHHHHHHHHT----TTEEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTT
T ss_pred ECCCCCHHHHHHHHHHHHH----cCCeEEEccCCCCHHHHHcCCeEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCC
Confidence 6555432 2345555442 1445543321 2344555554 78899999999999999988886444
Q ss_pred ccc----HHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHcccC
Q psy13746 239 RGF----ALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMSEGLG 277 (294)
Q Consensus 239 ~g~----v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g 277 (294)
.+. +.|.+. ...++|++.++++.|++++++...+..+.+
T Consensus 167 ~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~ 212 (295)
T 1yb4_A 167 DGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFA 212 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 543 334332 357899999999999999999999886554
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=145.58 Aligned_cols=210 Identities=16% Similarity=0.136 Sum_probs=142.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
.+||+|| |.||.++|.+|+++|++|++||+++++++...+... +.| +..-+
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~---~i~----------------------e~gl~-- 60 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGV---PIH----------------------EPGLK-- 60 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCC---SSC----------------------CTTHH--
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCC---CcC----------------------CCCHH--
Confidence 4799999 999999999999999999999999999887654211 111 10000
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCc--------chHHHHHHHHHHhcccC
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE--------ILQIKHQVYRAIDIFMS 162 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe--------~~~~k~~~~~~l~~~~~ 162 (294)
..+.+.+. ..++++++|+++++++||+||+|+|. |+...+++++++.++++
T Consensus 61 --------~~l~~~~~-------------~~~l~~ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~ 119 (478)
T 2y0c_A 61 --------EVIARNRS-------------AGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMT 119 (478)
T ss_dssp --------HHHHHHHH-------------TTCEEEECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHhcc-------------cCCEEEECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcC
Confidence 00111011 13478899998889999999999998 34667889999999999
Q ss_pred CCeEEEecCCCCCHHH---HHhhcC----CC---CceeeeeecCCCCCCC--e-------EEEecCCCCCH----HHHHH
Q psy13746 163 SNTILSSSTSSFLPSV---LSEHST----HR---SQFIVAHPVNPPYFIP--L-------VEIVPAAWTSE----RVITR 219 (294)
Q Consensus 163 ~~~ii~s~tSt~~~~~---ia~~l~----~~---~~~ig~h~~~p~~~~~--l-------veiv~g~~t~~----e~~~~ 219 (294)
++++|+ +.||+++.. +.+.+. .+ ..+ ...++|....+ . -.++.|. .++ +..+.
T Consensus 120 ~~~iVV-~~STv~~gt~~~l~~~l~~~~~~g~~~~~~--~v~~~Pe~~~eG~~~~~~~~p~~iviG~-~~~~~~~~~~~~ 195 (478)
T 2y0c_A 120 GFKVIV-DKSTVPVGTAERVRAAVAEELAKRGGDQMF--SVVSNPEFLKEGAAVDDFTRPDRIVIGC-DDDVPGERAREL 195 (478)
T ss_dssp SCEEEE-ECSCCCTTHHHHHHHHHHHHHHHTTCCCCE--EEEECCCCCCTTCHHHHHHSCSCEEEEC-CSSHHHHHHHHH
T ss_pred CCCEEE-EeCCcCCCchHHHHHHHHHHhcCCCCCccE--EEEEChhhhcccceeeccCCCCEEEEEE-CCCcccHHHHHH
Confidence 999886 456776542 222221 11 111 23445543221 1 1244443 334 78899
Q ss_pred HHHHHHHcCC--eeEEEcc----cccccHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHc
Q psy13746 220 TREIMTEIGM--KPVTLTT----EIRGFALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMSE 274 (294)
Q Consensus 220 ~~~ll~~lG~--~~v~v~~----~~~g~v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~~ 274 (294)
++++++.+++ .+++++. +-.+++.|.+. .++++|+..++++.|++++++.+++..
T Consensus 196 ~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~i~~ 259 (478)
T 2y0c_A 196 MKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLADRFGADIEAVRRGIGS 259 (478)
T ss_dssp HHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 9999998875 5666642 22345677665 468999999999999999999988864
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.9e-16 Score=137.41 Aligned_cols=163 Identities=16% Similarity=0.149 Sum_probs=123.2
Q ss_pred CCCccceEEE--ccccHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeec
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDV 85 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 85 (294)
.|.+++|+|| |.||+++|..|+++ |++|++||++++.++.+.+
T Consensus 3 ~M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~--------------------------------- 49 (290)
T 3b1f_A 3 AMEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE--------------------------------- 49 (290)
T ss_dssp GGCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH---------------------------------
T ss_pred ccccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH---------------------------------
Confidence 3667899999 99999999999987 6899999999988765432
Q ss_pred chHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcc-cCCC
Q psy13746 86 LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF-MSSN 164 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~-~~~~ 164 (294)
.|.. ...++++.++++++|+||.|+|.+.. .++++++.+. ++++
T Consensus 50 ---------------------~g~~------------~~~~~~~~~~~~~aDvVilavp~~~~--~~v~~~l~~~~l~~~ 94 (290)
T 3b1f_A 50 ---------------------RGIV------------DEATADFKVFAALADVIILAVPIKKT--IDFIKILADLDLKED 94 (290)
T ss_dssp ---------------------TTSC------------SEEESCTTTTGGGCSEEEECSCHHHH--HHHHHHHHTSCCCTT
T ss_pred ---------------------cCCc------------ccccCCHHHhhcCCCEEEEcCCHHHH--HHHHHHHHhcCCCCC
Confidence 1211 02456777778999999999998753 6788889888 8899
Q ss_pred eEEEecCCCCC--HHHHHhhcCC-CCceeeeeec------CCCC------CCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy13746 165 TILSSSTSSFL--PSVLSEHSTH-RSQFIVAHPV------NPPY------FIPLVEIVPAAWTSERVITRTREIMTEIGM 229 (294)
Q Consensus 165 ~ii~s~tSt~~--~~~ia~~l~~-~~~~ig~h~~------~p~~------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~ 229 (294)
++|++.+++.. .+.+++.+.. ..++++.||+ .|.. .+..+.++++..++++.++.++++|+.+|.
T Consensus 95 ~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~ 174 (290)
T 3b1f_A 95 VIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHA 174 (290)
T ss_dssp CEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCC
T ss_pred CEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 98885444322 2456666654 6789999998 3432 345677888777888999999999999999
Q ss_pred eeEEEcccccc
Q psy13746 230 KPVTLTTEIRG 240 (294)
Q Consensus 230 ~~v~v~~~~~g 240 (294)
++++++++.+.
T Consensus 175 ~~~~~~~~~~d 185 (290)
T 3b1f_A 175 RYVEIDAAEHD 185 (290)
T ss_dssp EEEECCHHHHH
T ss_pred EEEEcCHHHHH
Confidence 98888544443
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-16 Score=148.70 Aligned_cols=192 Identities=18% Similarity=0.254 Sum_probs=137.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
.+|+|| |.||++||..|+++|++|++|||++++++++.+...
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~------------------------------------ 54 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEA------------------------------------ 54 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTT------------------------------------
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccc------------------------------------
Confidence 589999 999999999999999999999999998776543100
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccC---CcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.| ..+..+.++++++++ +|+||.|+|.+..+ +++++++.+.++++++|+
T Consensus 55 ---------------~~------------~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iII 106 (497)
T 2p4q_A 55 ---------------KG------------KSIIGATSIEDFISKLKRPRKVMLLVKAGAPV-DALINQIVPLLEKGDIII 106 (497)
T ss_dssp ---------------TT------------SSEECCSSHHHHHHTSCSSCEEEECCCSSHHH-HHHHHHHGGGCCTTCEEE
T ss_pred ---------------cC------------CCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH-HHHHHHHHHhCCCCCEEE
Confidence 00 124567788877776 99999999997554 456788999999999988
Q ss_pred ecCCCCCH--HHHHhhcC-CCCceeeeeecCCCC---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcc
Q psy13746 169 SSTSSFLP--SVLSEHST-HRSQFIVAHPVNPPY---FIPLVEIVPAAWTSERVITRTREIMTEIGMK------PVTLTT 236 (294)
Q Consensus 169 s~tSt~~~--~~ia~~l~-~~~~~ig~h~~~p~~---~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~------~v~v~~ 236 (294)
+.+++.+. ..+.+.+. ...+|+++....++. .+. .++.+ ++++.++.++++|+.+|.+ ++++++
T Consensus 107 d~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~--~im~g--g~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~ 182 (497)
T 2p4q_A 107 DGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP--SLMPG--GSEEAWPHIKNIFQSISAKSDGEPCCEWVGP 182 (497)
T ss_dssp ECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EEEEE--ECGGGHHHHHHHHHHHSCEETTEESCCCCEE
T ss_pred ECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC--eEEec--CCHHHHHHHHHHHHHhcCccCCCCceEEECC
Confidence 76555432 23444443 234566543333221 233 24444 3788999999999999998 677765
Q ss_pred ccccc----HHHHHH---HHHHHHHHHHHHcC-CCCHHHHHHHHH
Q psy13746 237 EIRGF----ALNRIQ---FAVLNECYHLVHDG-VLSAKDIDRVMS 273 (294)
Q Consensus 237 ~~~g~----v~nri~---~a~~~Ea~~l~~~~-~~~~~~id~a~~ 273 (294)
.+.|. +.|.+. ...++|++.++++. |++++++..++.
T Consensus 183 ~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~ 227 (497)
T 2p4q_A 183 AGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFA 227 (497)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 55554 345544 46799999999994 999999998874
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-16 Score=148.41 Aligned_cols=213 Identities=12% Similarity=0.116 Sum_probs=140.8
Q ss_pred ccceEEE--ccccHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
+++|+|| |.||.++|.+|+++ |++|++||+++++++...+... + +++.
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~---~----------------------i~e~--- 56 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTL---P----------------------IYEP--- 56 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSC---S----------------------SCCT---
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCC---C----------------------cCCC---
Confidence 4699999 99999999999998 8999999999998776432100 0 0110
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHH-------------HHHHHH
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQI-------------KHQVYR 155 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~-------------k~~~~~ 155 (294)
.+.++++.+ ...++++++++.+++++||+||.|+|.+... ...+++
T Consensus 57 -----------~l~~~~~~~----------~~~~~~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~ 115 (467)
T 2q3e_A 57 -----------GLKEVVESC----------RGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACAR 115 (467)
T ss_dssp -----------THHHHHHHH----------BTTTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHH
T ss_pred -----------CHHHHHHHh----------hcCCEEEECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHH
Confidence 011111100 0023677889888899999999999876532 246677
Q ss_pred HHhcccCCCeEEEecCCCCCHH---HHHhhcCCC-Cceeeee-ecCCCCC--CCeE--------EEecCCC--CCHHHHH
Q psy13746 156 AIDIFMSSNTILSSSTSSFLPS---VLSEHSTHR-SQFIVAH-PVNPPYF--IPLV--------EIVPAAW--TSERVIT 218 (294)
Q Consensus 156 ~l~~~~~~~~ii~s~tSt~~~~---~ia~~l~~~-~~~ig~h-~~~p~~~--~~lv--------eiv~g~~--t~~e~~~ 218 (294)
++.+.++++++|+ +.||+++. .+.+.+... ..++..+ .++|... +..+ .+++++. .+++..+
T Consensus 116 ~i~~~l~~g~iVV-~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~ 194 (467)
T 2q3e_A 116 RIVQNSNGYKIVT-EKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQ 194 (467)
T ss_dssp HHHHTCCSEEEEE-ECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHH
T ss_pred HHHhhCCCCCEEE-ECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHH
Confidence 8888889999886 45555544 343333211 1112212 2334332 2222 3445533 3788899
Q ss_pred HHHHHHHHc-CCeeEEEccc----ccccHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHcc
Q psy13746 219 RTREIMTEI-GMKPVTLTTE----IRGFALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMSEG 275 (294)
Q Consensus 219 ~~~~ll~~l-G~~~v~v~~~----~~g~v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~~g 275 (294)
.++++++.+ |..+++++.. ..+++.|.+. .++++|+..++++.|++++++..++...
T Consensus 195 ~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 259 (467)
T 2q3e_A 195 ALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMD 259 (467)
T ss_dssp HHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTS
T ss_pred HHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCC
Confidence 999999999 7777777531 2345667654 4689999999999999999999999864
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=145.31 Aligned_cols=195 Identities=16% Similarity=0.232 Sum_probs=138.1
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.|+-++|+|| |.||++||..|+++|++|++|||+++++++..+..
T Consensus 12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~--------------------------------- 58 (480)
T 2zyd_A 12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAEN--------------------------------- 58 (480)
T ss_dssp ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS---------------------------------
T ss_pred ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC---------------------------------
Confidence 4667899999 99999999999999999999999998877654310
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccC---CcEEEEcCCcchHHHHHHHHHHhcccCCC
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSN 164 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~ 164 (294)
.| ..+..++++++++++ +|+||.|+|....+ +++++++.+.++++
T Consensus 59 -------------------~~------------~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g 106 (480)
T 2zyd_A 59 -------------------PG------------KKLVPYYTVKEFVESLETPRRILLMVKAGAGT-DAAIDSLKPYLDKG 106 (480)
T ss_dssp -------------------TT------------SCEEECSSHHHHHHTBCSSCEEEECSCSSSHH-HHHHHHHGGGCCTT
T ss_pred -------------------CC------------CCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH-HHHHHHHHhhcCCC
Confidence 00 125567788877776 99999999996544 46778999999999
Q ss_pred eEEEecCCCCCH--HHHHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCe-------e
Q psy13746 165 TILSSSTSSFLP--SVLSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMK-------P 231 (294)
Q Consensus 165 ~ii~s~tSt~~~--~~ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~-------~ 231 (294)
++|++.+++.+. ..+.+.+. ...+|++.....++ ..+. .++.+ ++++.++.++++|+.+|.+ +
T Consensus 107 ~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~i~~g--g~~~~~~~v~~ll~~~g~~~~dGe~~v 182 (480)
T 2zyd_A 107 DIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP--SIMPG--GQKEAYELVAPILTKIAAVAEDGEPCV 182 (480)
T ss_dssp CEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EEEEE--SCHHHHHHHHHHHHHHSCBCTTSCBSB
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC--eEEec--CCHHHHHHHHHHHHHHhccccCCCceE
Confidence 998876666533 24444443 34456654222211 1233 34544 3689999999999999998 6
Q ss_pred EEEccccccc----HHHHHH---HHHHHHHHHHHHc-CCCCHHHHHHHHH
Q psy13746 232 VTLTTEIRGF----ALNRIQ---FAVLNECYHLVHD-GVLSAKDIDRVMS 273 (294)
Q Consensus 232 v~v~~~~~g~----v~nri~---~a~~~Ea~~l~~~-~~~~~~~id~a~~ 273 (294)
.++++.+.|. +.|.+. ...++|++.++++ .|++++++..++.
T Consensus 183 ~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~ 232 (480)
T 2zyd_A 183 TYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFT 232 (480)
T ss_dssp CCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred EEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7776544443 344442 4578999999999 5889999988773
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-15 Score=133.32 Aligned_cols=185 Identities=14% Similarity=0.065 Sum_probs=128.9
Q ss_pred CCccceEEE--ccccHHHHHHHHHCC----CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEee
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAG----YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYD 84 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G----~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 84 (294)
|..++|+|| |.||++||..|+++| ++|++||+++++ .
T Consensus 2 m~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~--------~----------------------------- 44 (262)
T 2rcy_A 2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN--------T----------------------------- 44 (262)
T ss_dssp CSSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS--------S-----------------------------
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc--------C-----------------------------
Confidence 445689999 999999999999999 799999999754 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCC
Q psy13746 85 VLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSN 164 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~ 164 (294)
| +..++++.++++++|+||.|+|.+. ..+++.++.+.+ ++
T Consensus 45 -----------------------g--------------~~~~~~~~~~~~~~D~vi~~v~~~~--~~~v~~~l~~~l-~~ 84 (262)
T 2rcy_A 45 -----------------------T--------------LNYMSSNEELARHCDIIVCAVKPDI--AGSVLNNIKPYL-SS 84 (262)
T ss_dssp -----------------------S--------------SEECSCHHHHHHHCSEEEECSCTTT--HHHHHHHSGGGC-TT
T ss_pred -----------------------c--------------eEEeCCHHHHHhcCCEEEEEeCHHH--HHHHHHHHHHhc-CC
Confidence 1 2345677777889999999999754 567888888888 56
Q ss_pred eEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccH-
Q psy13746 165 TILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA- 242 (294)
Q Consensus 165 ~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v- 242 (294)
++|++.++++.++.+++.++...+++...|..|...+. ...+++++.++++.++.++++|+.+|. +++++.+..+.+
T Consensus 85 ~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~~~~~~~~~~~~~ll~~~G~-~~~~~~~~~~~~~ 163 (262)
T 2rcy_A 85 KLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGI-IHEIKEKDMDIAT 163 (262)
T ss_dssp CEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTSEE-EEECCGGGHHHHH
T ss_pred CEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHH
Confidence 66667888898888877765432333222222332222 445667777789999999999999997 888853333321
Q ss_pred -----HHHHHHHHHHHHH-HHHHcCCCCHHHHHHHHHc
Q psy13746 243 -----LNRIQFAVLNECY-HLVHDGVLSAKDIDRVMSE 274 (294)
Q Consensus 243 -----~nri~~a~~~Ea~-~l~~~~~~~~~~id~a~~~ 274 (294)
.|..+ ..+.|++ ..+.+.|+++++..+.+..
T Consensus 164 a~~~~~~~~~-~~~~~al~~~~~~~Gl~~~~~~~~~~~ 200 (262)
T 2rcy_A 164 AISGCGPAYV-YLFIESLIDAGVKNGLSRELSKNLVLQ 200 (262)
T ss_dssp HHTTSHHHHH-HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHccHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12222 2333444 3356778898877666544
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=137.92 Aligned_cols=197 Identities=16% Similarity=0.151 Sum_probs=136.2
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.|..+||+|| |.||.++|..|+++|++|++||++++.++...+...+ +.|++
T Consensus 26 ~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~--~~~l~------------------------ 79 (356)
T 3k96_A 26 EPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVN--NRYLP------------------------ 79 (356)
T ss_dssp -CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSB--TTTBT------------------------
T ss_pred cccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC--cccCC------------------------
Confidence 4445799999 9999999999999999999999999988765543211 11110
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
| .....++++++|+.++++++|+||.|+|.. ..+++++++.++++++++|
T Consensus 80 --------------------g--------~~l~~~i~~t~d~~ea~~~aDvVilaVp~~--~~~~vl~~i~~~l~~~~iv 129 (356)
T 3k96_A 80 --------------------N--------YPFPETLKAYCDLKASLEGVTDILIVVPSF--AFHEVITRMKPLIDAKTRI 129 (356)
T ss_dssp --------------------T--------CCCCTTEEEESCHHHHHTTCCEEEECCCHH--HHHHHHHHHGGGCCTTCEE
T ss_pred --------------------C--------CccCCCeEEECCHHHHHhcCCEEEECCCHH--HHHHHHHHHHHhcCCCCEE
Confidence 0 012245778889988899999999999976 4678999999999999999
Q ss_pred EecCCCCCHH------HHHhhcCCCCceeeeeec-CCCC------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 168 SSSTSSFLPS------VLSEHSTHRSQFIVAHPV-NPPY------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 168 ~s~tSt~~~~------~ia~~l~~~~~~ig~h~~-~p~~------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
++.+.++.+. .+++.++. .++ ... .|.. ..+...++.+ .+++..+.++++|+..+.++++.
T Consensus 130 vs~~kGi~~~t~~~se~i~~~l~~-~~~---~vlsgP~~a~ev~~g~pt~~via~--~~~~~~~~v~~lf~~~~~rv~~~ 203 (356)
T 3k96_A 130 AWGTKGLAKGSRLLHEVVATELGQ-VPM---AVISGPSLATEVAANLPTAVSLAS--NNSQFSKDLIERLHGQRFRVYKN 203 (356)
T ss_dssp EECCCSCBTTTBCHHHHHHHHHCS-CCE---EEEESSCCHHHHHTTCCEEEEEEE--SCHHHHHHHHHHHCCSSEEEEEE
T ss_pred EEEeCCCCcCccCHHHHHHHHcCC-CCE---EEEECccHHHHHHcCCCeEEEEec--CCHHHHHHHHHHhCCCCeeEEEe
Confidence 8888777654 34444431 111 111 2221 1223333333 47889999999999999888776
Q ss_pred cccccc-----cHH----------------HHH----HHHHHHHHHHHHHcCCCCHHHHH
Q psy13746 235 TTEIRG-----FAL----------------NRI----QFAVLNECYHLVHDGVLSAKDID 269 (294)
Q Consensus 235 ~~~~~g-----~v~----------------nri----~~a~~~Ea~~l~~~~~~~~~~id 269 (294)
.|..| .+- ++. +...++|+.++++..|++++++.
T Consensus 204 -~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~ 262 (356)
T 3k96_A 204 -DDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLT 262 (356)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhc
Confidence 45433 111 111 23468999999999999998764
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=140.93 Aligned_cols=194 Identities=13% Similarity=0.102 Sum_probs=127.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeE-EEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKV-SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.||++||..|+++ ++| .+||+++++++++.+.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~------------------------------------ 45 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVY------------------------------------ 45 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHT------------------------------------
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHc------------------------------------
Confidence 589999 99999999999988 999 59999998876543211
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
| . .+.+++++++++|+||+|+|++. ..+++.++. .++++|++.
T Consensus 46 -----------------g--------------~-~~~~~~~~~~~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~ 88 (276)
T 2i76_A 46 -----------------G--------------G-KAATLEKHPELNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHC 88 (276)
T ss_dssp -----------------C--------------C-CCCSSCCCCC---CEEECSCTTT--HHHHHTTTC---CSSCCEEEC
T ss_pred -----------------C--------------C-ccCCHHHHHhcCCEEEEeCChHH--HHHHHHHhc---cCCCEEEEC
Confidence 1 1 24566667789999999999986 557776664 577888765
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCC-----C---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc--
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPP-----Y---FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG-- 240 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~-----~---~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g-- 240 (294)
+++.+.+.++.. .+.+.||+.+. . .......+.+ +++.++.++++++.+|+++++++.+...
T Consensus 89 s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~ 160 (276)
T 2i76_A 89 SGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFGLEG---DERGLPIVKKIAEEISGKYFVIPSEKKKAY 160 (276)
T ss_dssp CSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEEECC---CTTTHHHHHHHHHHHCSCEEECCGGGHHHH
T ss_pred CCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeEEEEe---ChHHHHHHHHHHHHhCCCEEEECHHHHHHH
Confidence 545665544332 35566764422 1 1123233444 4566899999999999999998532221
Q ss_pred ----cHHHHHHHHHHHHHHHHHHcCCCCHH----------HHHHHHHcc-cCCCcCCCChhhhhccc
Q psy13746 241 ----FALNRIQFAVLNECYHLVHDGVLSAK----------DIDRVMSEG-LGLRYAFLGPLETIHLN 292 (294)
Q Consensus 241 ----~v~nri~~a~~~Ea~~l~~~~~~~~~----------~id~a~~~g-~g~~~~~~Gp~~~~D~~ 292 (294)
.+.++.+..+++|+..++.+.|++.+ .++.+++.| .+ ..+||++..|..
T Consensus 161 ~~~~~l~~n~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~~~~~~gp~~---~~tgP~~r~D~~ 224 (276)
T 2i76_A 161 HLAAVIASNFPVALAYLSKRIYTLLGLDEPELLIHTLMKGVADNIKKMRVEC---SLTGPVKRGDWQ 224 (276)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHSCGGG---GCCSHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhcChHh---hCCCCcccCCHH
Confidence 24445666788999999998888765 566667655 33 359999888853
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-15 Score=130.53 Aligned_cols=158 Identities=18% Similarity=0.270 Sum_probs=118.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
++|+|| |.||+++|..|++.|+ +|++||++++.++.+.+
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~------------------------------------- 44 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD------------------------------------- 44 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-------------------------------------
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-------------------------------------
Confidence 689999 9999999999999999 99999999988765421
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhcc-CCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE-DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~-~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.|.. ...++++.++++ ++|+||+|+|.+. ..+++.++.+.++++++|+
T Consensus 45 -----------------~g~~------------~~~~~~~~~~~~~~aDvVilavp~~~--~~~v~~~l~~~l~~~~iv~ 93 (281)
T 2g5c_A 45 -----------------LGII------------DEGTTSIAKVEDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVT 93 (281)
T ss_dssp -----------------TTSC------------SEEESCGGGGGGTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEE
T ss_pred -----------------CCCc------------ccccCCHHHHhcCCCCEEEEcCCHHH--HHHHHHHHHhhCCCCcEEE
Confidence 1211 023456777788 9999999999874 3477888888888899887
Q ss_pred ecCCCCC--HHHHHhhcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 169 SSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 169 s~tSt~~--~~~ia~~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
+.+++.. .+.+++.+.. ++++.||+.++. .+..+.++++..++++.++.++++|+.+|.+++++
T Consensus 94 ~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~ 171 (281)
T 2g5c_A 94 DQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYM 171 (281)
T ss_dssp ECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEEC
T ss_pred ECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 6444332 2345555532 488999987532 34567788877789999999999999999999888
Q ss_pred ccccccc
Q psy13746 235 TTEIRGF 241 (294)
Q Consensus 235 ~~~~~g~ 241 (294)
+++.++.
T Consensus 172 ~~~~~d~ 178 (281)
T 2g5c_A 172 SPELHDY 178 (281)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 5444443
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.9e-15 Score=130.10 Aligned_cols=163 Identities=19% Similarity=0.176 Sum_probs=120.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+++|..|++.|++|++||++++.++.+.+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--------------------------------------- 41 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE--------------------------------------- 41 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH---------------------------------------
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh---------------------------------------
Confidence 379999 999999999999999999999999988765421
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.|.. ...++++.++ +++|+||.|+|.+. ..+++.++.+.++++++|++.
T Consensus 42 ---------------~g~~------------~~~~~~~~~~-~~~D~vi~av~~~~--~~~~~~~l~~~~~~~~~vv~~- 90 (279)
T 2f1k_A 42 ---------------RQLV------------DEAGQDLSLL-QTAKIIFLCTPIQL--ILPTLEKLIPHLSPTAIVTDV- 90 (279)
T ss_dssp ---------------TTSC------------SEEESCGGGG-TTCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEEC-
T ss_pred ---------------CCCC------------ccccCCHHHh-CCCCEEEEECCHHH--HHHHHHHHHhhCCCCCEEEEC-
Confidence 1210 0235677777 99999999999753 567888999989999988764
Q ss_pred CCCCHHHHHhhcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc
Q psy13746 172 SSFLPSVLSEHSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR 239 (294)
Q Consensus 172 St~~~~~ia~~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~ 239 (294)
++.....+........++++.||+.+.. .+..+.+++++.++++.++.++++|+.+|.++++++...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~ 170 (279)
T 2f1k_A 91 ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCTPADH 170 (279)
T ss_dssp CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEECCHHHH
T ss_pred CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHH
Confidence 5555544433322223899999986321 2346778887778999999999999999999988854445
Q ss_pred ccHHHHH
Q psy13746 240 GFALNRI 246 (294)
Q Consensus 240 g~v~nri 246 (294)
+.+...+
T Consensus 171 ~~~~~~~ 177 (279)
T 2f1k_A 171 DQAVAWI 177 (279)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=130.71 Aligned_cols=158 Identities=13% Similarity=0.061 Sum_probs=122.4
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
..++|+|| |.||++||..|+++|++|++||+.+
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~--------------------------------------------- 39 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPE--------------------------------------------- 39 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSGG---------------------------------------------
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHH---------------------------------------------
Confidence 34689999 9999999999999999999998720
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.+++|| |.|+|.+. ..++++++.+.++++++|++
T Consensus 40 ------------------------------------------~~~~aD--ilavP~~a--i~~vl~~l~~~l~~g~ivvd 73 (232)
T 3dfu_A 40 ------------------------------------------DIRDFE--LVVIDAHG--VEGYVEKLSAFARRGQMFLH 73 (232)
T ss_dssp ------------------------------------------GGGGCS--EEEECSSC--HHHHHHHHHTTCCTTCEEEE
T ss_pred ------------------------------------------HhccCC--EEEEcHHH--HHHHHHHHHHhcCCCCEEEE
Confidence 135577 88999974 46788999999999999987
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc-ccc----HHH
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI-RGF----ALN 244 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~-~g~----v~n 244 (294)
.+++.+.+.++....++.+|++.||+... ...+.++ +++.++.++++++.+|+++++++++. +.+ ..+
T Consensus 74 ~sgs~~~~vl~~~~~~g~~fvg~HPm~g~----~~~i~a~---d~~a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~ 146 (232)
T 3dfu_A 74 TSLTHGITVMDPLETSGGIVMSAHPIGQD----RWVASAL---DELGETIVGLLVGELGGSIVEIADDKRAQLAAALTYA 146 (232)
T ss_dssp CCSSCCGGGGHHHHHTTCEEEEEEEEETT----EEEEEES---SHHHHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHH
T ss_pred ECCcCHHHHHHHHHhCCCcEEEeeeCCCC----ceeeeCC---CHHHHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHH
Confidence 65555544444444467789999999643 2334443 78899999999999999999996543 344 346
Q ss_pred HHHHHHHHHHHHHH---HcCCCCHHH
Q psy13746 245 RIQFAVLNECYHLV---HDGVLSAKD 267 (294)
Q Consensus 245 ri~~a~~~Ea~~l~---~~~~~~~~~ 267 (294)
+.+.++.++|.+++ ++|..+++|
T Consensus 147 nhLv~L~~~A~~ll~~~~~g~a~~~d 172 (232)
T 3dfu_A 147 GFLSTLQRDASYFLDEFLGDPDVTSD 172 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChhh
Confidence 66778899999999 888888888
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.3e-16 Score=147.20 Aligned_cols=114 Identities=20% Similarity=0.252 Sum_probs=103.7
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHH
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a 249 (294)
.+++.+.++. ...+|.++++.|+++ .+++|+++++.|++++++.+..+++.+|+.++.+ +|.+|++.||++.+
T Consensus 324 ~~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~-~d~~g~i~~Rll~~ 396 (483)
T 3mog_A 324 ETQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQI-ADYPGMLIWRTVAM 396 (483)
T ss_dssp ECSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEEC-CCCTTTTHHHHHHH
T ss_pred ccCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeee-cccccHHHHHHHHH
Confidence 4566665554 334688999999887 6799999999999999999999999999999998 69999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 250 ~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++|||++++++|.++++|||.+++.|+||| +|||+|+|.+|
T Consensus 397 ~~nEA~~~l~eGvas~~diD~a~~~G~G~P---~GPl~~~D~~G 437 (483)
T 3mog_A 397 IINEALDALQKGVASEQDIDTAMRLGVNYP---YGPLAWGAQLG 437 (483)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHSCCS---SCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhCCCCC---CCHHHHHHHhC
Confidence 999999999999999999999999999999 79999999987
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=139.02 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=137.2
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|+.++|+|| |.||+.+|..|+++|++|++||++++++++..+...
T Consensus 3 m~~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~--------------------------------- 49 (474)
T 2iz1_A 3 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQ--------------------------------- 49 (474)
T ss_dssp CTTBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT---------------------------------
T ss_pred CCCCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCc---------------------------------
Confidence 444689999 999999999999999999999999988776543210
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccC---CcEEEEcCCcchHHHHHHHHHHhcccCCCe
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNT 165 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ 165 (294)
+ ..+..++++++++++ +|+||.|+|....+ ..+++++.+.+++++
T Consensus 50 -------------------~------------~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v-~~vl~~l~~~l~~g~ 97 (474)
T 2iz1_A 50 -------------------D------------KNLVFTKTLEEFVGSLEKPRRIMLMVQAGAAT-DATIKSLLPLLDIGD 97 (474)
T ss_dssp -------------------T------------SCEEECSSHHHHHHTBCSSCEEEECCCTTHHH-HHHHHHHGGGCCTTC
T ss_pred -------------------C------------CCeEEeCCHHHHHhhccCCCEEEEEccCchHH-HHHHHHHHhhCCCCC
Confidence 0 124566788877665 99999999997554 356788989999999
Q ss_pred EEEecCCCCCH--HHHHhhcCC-CCceeeeeecC-CC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCe--------
Q psy13746 166 ILSSSTSSFLP--SVLSEHSTH-RSQFIVAHPVN-PP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMK-------- 230 (294)
Q Consensus 166 ii~s~tSt~~~--~~ia~~l~~-~~~~ig~h~~~-p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~-------- 230 (294)
+|++.+++.+. ..+.+.+.. ..+|++. |+. ++ ..+. . ++++ ++++.++.++++|+.+|.+
T Consensus 98 iiId~s~~~~~~~~~l~~~l~~~g~~~v~~-pv~gg~~~a~~g~-~-i~~g--g~~~~~~~v~~ll~~~g~~~~~dge~~ 172 (474)
T 2iz1_A 98 ILIDGGNTHFPDTMRRNAELADSGINFIGT-GVSGGEKGALLGP-S-MMPG--GQKEAYDLVAPIFEQIAAKAPQDGKPC 172 (474)
T ss_dssp EEEECSCCCHHHHHHHHHHTTTSSCEEEEE-EECSHHHHHHHCC-C-EEEE--ECHHHHHHHHHHHHHHSCBCTTTCCBS
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCeEECC-CCCCChhhhccCC-e-EEec--CCHHHHHHHHHHHHHHhcccccCCCce
Confidence 88876555532 345555542 3455544 332 11 1233 2 3444 3789999999999999988
Q ss_pred eEEEccccccc----HHHHHH---HHHHHHHHHHHHc-CCCCHHHHHHHHH
Q psy13746 231 PVTLTTEIRGF----ALNRIQ---FAVLNECYHLVHD-GVLSAKDIDRVMS 273 (294)
Q Consensus 231 ~v~v~~~~~g~----v~nri~---~a~~~Ea~~l~~~-~~~~~~~id~a~~ 273 (294)
+.++++.+.|. +.|.+. ...++|++.++++ .|++++++..++.
T Consensus 173 ~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~ 223 (474)
T 2iz1_A 173 VAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFE 223 (474)
T ss_dssp BCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred EEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 46665444442 445443 3578999999999 5899999988874
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=132.14 Aligned_cols=187 Identities=18% Similarity=0.160 Sum_probs=132.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|++ |++|++||+++++.+...+.
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~-------------------------------------- 42 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE-------------------------------------- 42 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH--------------------------------------
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC--------------------------------------
Confidence 589999 9999999999999 99999999999887654321
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
| +..++ +.++++++|+||.|+|.+..++ .+++++.+.++++++|++.
T Consensus 43 ----------------g--------------~~~~~-~~~~~~~~D~vi~~v~~~~~~~-~v~~~l~~~l~~~~~vv~~- 89 (289)
T 2cvz_A 43 ----------------F--------------GSEAV-PLERVAEARVIFTCLPTTREVY-EVAEALYPYLREGTYWVDA- 89 (289)
T ss_dssp ----------------H--------------CCEEC-CGGGGGGCSEEEECCSSHHHHH-HHHHHHTTTCCTTEEEEEC-
T ss_pred ----------------C--------------CcccC-HHHHHhCCCEEEEeCCChHHHH-HHHHHHHhhCCCCCEEEEC-
Confidence 2 11223 5567889999999999875544 4668888888889988754
Q ss_pred CCCCH---HHHHhhcCC-CCceeeeeecCC-C---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc--
Q psy13746 172 SSFLP---SVLSEHSTH-RSQFIVAHPVNP-P---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF-- 241 (294)
Q Consensus 172 St~~~---~~ia~~l~~-~~~~ig~h~~~p-~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~-- 241 (294)
|+..+ ..+.+.+.. ..+++.. |+.+ + ..+.+..++++ +++.++.++++| .+|.++++++....+.
T Consensus 90 s~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~ 164 (289)
T 2cvz_A 90 TSGEPEASRRLAERLREKGVTYLDA-PVSGGTSGAEAGTLTVMLGG---PEEAVERVRPFL-AYAKKVVHVGPVGAGHAV 164 (289)
T ss_dssp SCCCHHHHHHHHHHHHTTTEEEEEC-CEESHHHHHHHTCEEEEEES---CHHHHHHHGGGC-TTEEEEEEEESTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEe-cCCCChhHHhhCCeEEEECC---CHHHHHHHHHHH-hhcCCeEEcCCCcHHHHH
Confidence 33333 345555443 2345544 3321 1 12334444443 789999999999 9999888885444433
Q ss_pred --HHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHcccC
Q psy13746 242 --ALNRI---QFAVLNECYHLVHDGVLSAKDIDRVMSEGLG 277 (294)
Q Consensus 242 --v~nri---~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g 277 (294)
+.|.+ +...++|++.++++.|++++++...+..+.+
T Consensus 165 k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~ 205 (289)
T 2cvz_A 165 KAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSG 205 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCC
Confidence 23443 2467899999999999999999999887654
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-15 Score=138.90 Aligned_cols=210 Identities=18% Similarity=0.173 Sum_probs=135.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||.++|..|+++|++|++||+++++++...+... +. ++..
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~---~i----------------------~e~~----- 50 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKS---PI----------------------VEPG----- 50 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCC---SS----------------------CCTT-----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCC---Cc----------------------CCCC-----
Confidence 379999 999999999999999999999999999876543210 00 1100
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH--------HHHHHHHHHhcccCC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ--------IKHQVYRAIDIFMSS 163 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~--------~k~~~~~~l~~~~~~ 163 (294)
+.+++..+. ..+++++++++.+++++||+||.|+|.+.. ....+++++.+.+++
T Consensus 51 ---------l~~~~~~~~---------~~g~l~~t~~~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~ 112 (436)
T 1mv8_A 51 ---------LEALLQQGR---------QTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIRE 112 (436)
T ss_dssp ---------HHHHHHHHH---------HTTCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHhhc---------ccCceEEeCCHHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcc
Confidence 111111100 012467788998889999999999998653 123567888888888
Q ss_pred ---CeEEEecCCCCCHHH----HHhhcCC--CCce-eeee-ecCCCCCC--Ce-------EEEecCCCCCHHHHHHHHHH
Q psy13746 164 ---NTILSSSTSSFLPSV----LSEHSTH--RSQF-IVAH-PVNPPYFI--PL-------VEIVPAAWTSERVITRTREI 223 (294)
Q Consensus 164 ---~~ii~s~tSt~~~~~----ia~~l~~--~~~~-ig~h-~~~p~~~~--~l-------veiv~g~~t~~e~~~~~~~l 223 (294)
+++|+. .||.++.. +.+.+.. +.++ +..+ .++|.... .. -.++.|. ++++..+.++++
T Consensus 113 ~~~~~iVV~-~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l 190 (436)
T 1mv8_A 113 KSERHTVVV-RSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEI 190 (436)
T ss_dssp CCSCCEEEE-CSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHH
T ss_pred cCCCcEEEE-eCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHH
Confidence 888874 45554432 3333321 1111 1111 12343221 11 0233332 368899999999
Q ss_pred HHHcCCeeEEEcc----cccccHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHc
Q psy13746 224 MTEIGMKPVTLTT----EIRGFALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMSE 274 (294)
Q Consensus 224 l~~lG~~~v~v~~----~~~g~v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~~ 274 (294)
++.+|.. ++++. +..+++.|.+. .++++|+..++++.|++++++..++..
T Consensus 191 ~~~~~~~-v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~ 247 (436)
T 1mv8_A 191 YRELDAP-IIRKTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQ 247 (436)
T ss_dssp HTTSSSC-EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred HhccCCC-EEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Confidence 9999985 44432 12245666654 468999999999999999999999875
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-14 Score=137.21 Aligned_cols=212 Identities=11% Similarity=0.107 Sum_probs=137.8
Q ss_pred CCccceEEE--ccccHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
|.+++|+|| |.||.++|.+|+++ |++|++||+++++++...+... + +++.
T Consensus 7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~---~----------------------i~e~- 60 (481)
T 2o3j_A 7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKL---P----------------------IYEP- 60 (481)
T ss_dssp CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSC---S----------------------SCCT-
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCC---C----------------------cCCC-
Confidence 345799999 99999999999998 7999999999999876532110 0 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH-------------HHHHH
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ-------------IKHQV 153 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~-------------~k~~~ 153 (294)
.+.++++.+ ...++++++++.+++++||+||.|+|.+.. ....+
T Consensus 61 -------------gl~~~~~~~----------~~~~l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~ 117 (481)
T 2o3j_A 61 -------------GLDEIVFAA----------RGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESV 117 (481)
T ss_dssp -------------THHHHHHHH----------BTTTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHH
T ss_pred -------------CHHHHHHHh----------hcCCEEEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHH
Confidence 011111110 012367888987789999999999987542 35677
Q ss_pred HHHHhcccCCCeEEEecCCCCCHH---HHHhhcCC--C----Cc-eeeeeecCCCCC--CC-------e-EEEecCCCC-
Q psy13746 154 YRAIDIFMSSNTILSSSTSSFLPS---VLSEHSTH--R----SQ-FIVAHPVNPPYF--IP-------L-VEIVPAAWT- 212 (294)
Q Consensus 154 ~~~l~~~~~~~~ii~s~tSt~~~~---~ia~~l~~--~----~~-~ig~h~~~p~~~--~~-------l-veiv~g~~t- 212 (294)
++++.++++++++|+. .||+++. .+.+.+.. . .. ++..+ |... +. . -.++++...
T Consensus 118 ~~~i~~~l~~g~iVV~-~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~---Pe~~~~G~a~~~~~~~~~iviG~~~~~ 193 (481)
T 2o3j_A 118 SRTIAQYAGGPKIVVE-KSTVPVKAAESIGCILREAQKNNENLKFQVLSN---PEFLAEGTAMKDLANPDRVLIGGESSP 193 (481)
T ss_dssp HHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHTC----CCEEEEEC---CCCCCTTCHHHHHHSCSCEEEEECSSH
T ss_pred HHHHHHhCCCCCEEEE-CCCCCCCHHHHHHHHHHHhhCcCcCCceEEEeC---cccccccchhhcccCCCEEEEEecCch
Confidence 8889999999998874 4565544 23333321 1 11 12333 3221 11 1 123444321
Q ss_pred -CHHHHHHHHHHHHHcCC-eeEEEcccc----cccHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHcc
Q psy13746 213 -SERVITRTREIMTEIGM-KPVTLTTEI----RGFALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMSEG 275 (294)
Q Consensus 213 -~~e~~~~~~~ll~~lG~-~~v~v~~~~----~g~v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~~g 275 (294)
.++.++.++++++.++. .+++++.-. .+++.|.+. .++++|+..++++.|++++++..++..+
T Consensus 194 ~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~~~~~ 265 (481)
T 2o3j_A 194 EGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEATGAEISEVAHAVGYD 265 (481)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHTS
T ss_pred hhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHccC
Confidence 13678999999999996 677764211 234555543 4689999999999999999999998864
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-14 Score=135.53 Aligned_cols=195 Identities=13% Similarity=0.140 Sum_probs=136.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|+++|++|++||+++++++...+..
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~------------------------------------- 44 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKAN------------------------------------- 44 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT-------------------------------------
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-------------------------------------
Confidence 479999 99999999999999999999999998877654321
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhcc---CCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE---DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~---~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
|..+ . ..++..+++++++++ ++|+||.|+|....+ ..+++++.+.++++++|+
T Consensus 45 ----------------g~~~-----~--~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iII 100 (478)
T 1pgj_A 45 ----------------ASAP-----F--AGNLKAFETMEAFAASLKKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILV 100 (478)
T ss_dssp ----------------TTST-----T--GGGEEECSCHHHHHHHBCSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEE
T ss_pred ----------------CCCC-----C--CCCeEEECCHHHHHhcccCCCEEEEecCChHHH-HHHHHHHHhhCCCCCEEE
Confidence 1000 0 012456678877666 599999999997544 456688888898899888
Q ss_pred ecCCCCCH--HHHHhhcC-CCCceeeeeecCCCC---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCe-------eEEEc
Q psy13746 169 SSTSSFLP--SVLSEHST-HRSQFIVAHPVNPPY---FIPLVEIVPAAWTSERVITRTREIMTEIGMK-------PVTLT 235 (294)
Q Consensus 169 s~tSt~~~--~~ia~~l~-~~~~~ig~h~~~p~~---~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~-------~v~v~ 235 (294)
+.+++... ..+.+.+. ....|++.....++. .+. . ++.+ ++++.++.++++|+.+|.+ +.+++
T Consensus 101 d~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~-i~~g--g~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g 176 (478)
T 1pgj_A 101 DTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-A-FFPG--GTLSVWEEIRPIVEAAAAKADDGRPCVTMNG 176 (478)
T ss_dssp ECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-E-EEEE--ECHHHHHHHHHHHHHHSCBCTTSCBSCCCCC
T ss_pred ECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC-e-Eecc--CCHHHHHHHHHHHHHhcccccCCCeeEEEeC
Confidence 66555432 24554443 234555543222221 233 2 3444 3688999999999999987 56665
Q ss_pred cccccc----HHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 236 TEIRGF----ALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 236 ~~~~g~----v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
+.+.|. +.|.+. ..+++|++.++++.|++++++..++.
T Consensus 177 ~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~ 221 (478)
T 1pgj_A 177 SGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE 221 (478)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444443 344443 35799999999999999999998886
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-13 Score=122.69 Aligned_cols=203 Identities=14% Similarity=0.187 Sum_probs=132.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||+.+|..|+++|++|++||++++.++...+. |..+. +
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~-----------------------g~~~~--~------ 51 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN-----------------------GLIAD--F------ 51 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-----------------------CEEEE--E------
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC-----------------------CEEEE--e------
Confidence 4689999 9999999999999999999999999887765432 00000 0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeecc--ChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP--VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~--~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.+ .....++..++ +..++++++|+||.|+|.+. ..++++++.+.++++++|+
T Consensus 52 ----------------~~--------~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~--~~~v~~~l~~~l~~~~~iv 105 (316)
T 2ew2_A 52 ----------------NG--------EEVVANLPIFSPEEIDHQNEQVDLIIALTKAQQ--LDAMFKAIQPMITEKTYVL 105 (316)
T ss_dssp ----------------TT--------EEEEECCCEECGGGCCTTSCCCSEEEECSCHHH--HHHHHHHHGGGCCTTCEEE
T ss_pred ----------------CC--------CeeEecceeecchhhcccCCCCCEEEEEecccc--HHHHHHHHHHhcCCCCEEE
Confidence 00 00001122222 22223449999999999764 4678899999999999988
Q ss_pred ecCCCCCH-HHHHhhcCCCCceeeeeecC------CCC----CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 169 SSTSSFLP-SVLSEHSTHRSQFIVAHPVN------PPY----FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 169 s~tSt~~~-~~ia~~l~~~~~~ig~h~~~------p~~----~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
+.++++.. +.+++.++ +.++++.+++. |.. ....+.+.....++++.++.++++|+.+|..+.+. .+
T Consensus 106 ~~~~g~~~~~~l~~~~~-~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~-~d 183 (316)
T 2ew2_A 106 CLLNGLGHEDVLEKYVP-KENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPSGKKFALEVVDVFQKAGLNPSYS-SN 183 (316)
T ss_dssp ECCSSSCTHHHHTTTSC-GGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEC-TT
T ss_pred EecCCCCcHHHHHHHcC-CccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCCCccHHHHHHHHHHHhCCCCcEEc-hh
Confidence 87777765 45655554 23666444322 210 11233455444468899999999999999887776 34
Q ss_pred cc-----ccHHH------------------------HHHHHHHHHHHHHHHcCCCCH--HHHHHHHHc
Q psy13746 238 IR-----GFALN------------------------RIQFAVLNECYHLVHDGVLSA--KDIDRVMSE 274 (294)
Q Consensus 238 ~~-----g~v~n------------------------ri~~a~~~Ea~~l~~~~~~~~--~~id~a~~~ 274 (294)
.. +++.| .++...+.|++.++++.|+++ +.+...+..
T Consensus 184 ~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~ 251 (316)
T 2ew2_A 184 VRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAIYLDQAEVYTHIVQ 251 (316)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 31 12222 234457899999999999886 456555543
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.6e-14 Score=132.42 Aligned_cols=214 Identities=16% Similarity=0.165 Sum_probs=139.0
Q ss_pred CCCCCCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEe
Q psy13746 6 SFPAQGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLY 83 (294)
Q Consensus 6 ~~~~~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 83 (294)
-.|....+.+|+|| |++|.++|.+|++.||+|+++|+|+++++...+... .++
T Consensus 14 ~~p~~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~-------------------------pi~ 68 (444)
T 3vtf_A 14 LVPRGSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRP-------------------------HIY 68 (444)
T ss_dssp CCCTTCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCC-------------------------SSC
T ss_pred cCCCCCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCC-------------------------CCC
Confidence 34555567899999 999999999999999999999999999887643211 112
Q ss_pred ecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcc--------hHHHHHHHH
Q psy13746 84 DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEI--------LQIKHQVYR 155 (294)
Q Consensus 84 d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~--------~~~k~~~~~ 155 (294)
|..-+ +.+++.++. ++++++++..+++++||++|.|||.+ +.......+
T Consensus 69 Epgl~----------ell~~~~~~-------------g~l~~tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~ 125 (444)
T 3vtf_A 69 EPGLE----------EALGRALSS-------------GRLSFAESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAAR 125 (444)
T ss_dssp CTTHH----------HHHHHHHHT-------------TCEEECSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHH
T ss_pred CCCHH----------HHHHHHHHc-------------CCeeEEcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHH
Confidence 21110 112222222 35789999999999999999999863 333455666
Q ss_pred HHhcccC---CCeEEEecCCCCCHHHHHh----hcCC---CCce-eeeeecCCCCC--CC--------eEEEecCCCCCH
Q psy13746 156 AIDIFMS---SNTILSSSTSSFLPSVLSE----HSTH---RSQF-IVAHPVNPPYF--IP--------LVEIVPAAWTSE 214 (294)
Q Consensus 156 ~l~~~~~---~~~ii~s~tSt~~~~~ia~----~l~~---~~~~-ig~h~~~p~~~--~~--------lveiv~g~~t~~ 214 (294)
.|.++++ ++++|+ .-||+++...++ .+.. ...| ++ ++|... +. .-.++++ +++
T Consensus 126 ~I~~~l~~~~~g~lVV-~eSTVppGtte~~~~~~l~~~~~~~~f~v~---~~PErl~eG~a~~d~~~~~riViG~--~~~ 199 (444)
T 3vtf_A 126 AVGRGIRAKGRWHLVV-VKSTVPPGTTEGLVARAVAEEAGGVKFSVA---SNPEFLREGSALEDFFKPDRIVIGA--GDE 199 (444)
T ss_dssp HHHHHHHHHCSCCEEE-ECSCCCTTTTTTHHHHHHHTTTTTCCCEEE---ECCCCCCTTSHHHHHHSCSCEEEEE--SSH
T ss_pred HHHHHHhhcCCCeEEE-EeCCCCCchHHHHHHHHHHHhCCCCCceee---cCcccccCCccccccccCCcEEEcC--CCH
Confidence 6766664 456665 466666653221 1111 1111 21 133221 11 1113344 578
Q ss_pred HHHHHHHHHHHHcCCeeEEEccc---ccccHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 215 RVITRTREIMTEIGMKPVTLTTE---IRGFALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 215 e~~~~~~~ll~~lG~~~v~v~~~---~~g~v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
+..+.+.++++.+....+++... -..++.|... .+++||...++++.|+|..++.+++.
T Consensus 200 ~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnIa~~NEla~ice~~GiDv~eV~~a~~ 264 (444)
T 3vtf_A 200 RAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKISFANEVGLLAKRLGVDTYRVFEAVG 264 (444)
T ss_dssp HHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 88899999999888766555321 2234566554 36899999999999999999998886
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=136.81 Aligned_cols=192 Identities=16% Similarity=0.216 Sum_probs=134.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|+++|++|++||+++++++...+...
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~------------------------------------ 46 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA------------------------------------ 46 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTT------------------------------------
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccc------------------------------------
Confidence 479999 999999999999999999999999988776533100
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhc---cCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL---EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~---~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.| ..+..++++++++ +++|+||.|+|....+ ..++.++.+.++++++|+
T Consensus 47 ---------------~g------------~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iII 98 (482)
T 2pgd_A 47 ---------------KG------------TKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV-DNFIEKLVPLLDIGDIII 98 (482)
T ss_dssp ---------------TT------------SSCEECSSHHHHHHHBCSSCEEEECSCTTHHH-HHHHHHHHHHCCTTCEEE
T ss_pred ---------------cC------------CCeEEeCCHHHHHhhccCCCEEEEeCCChHHH-HHHHHHHHhhcCCCCEEE
Confidence 00 1145567887765 4999999999997554 356788888898888888
Q ss_pred ecCCCCCHH--HHHhhcC-CCCceeeeeecCCCC---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCee-------EEEc
Q psy13746 169 SSTSSFLPS--VLSEHST-HRSQFIVAHPVNPPY---FIPLVEIVPAAWTSERVITRTREIMTEIGMKP-------VTLT 235 (294)
Q Consensus 169 s~tSt~~~~--~ia~~l~-~~~~~ig~h~~~p~~---~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~-------v~v~ 235 (294)
+.+++.+.+ .+.+.+. ...+|+++....++. .+. .++.+ ++++.++.++++|+.+|.++ .+++
T Consensus 99 ~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~--~i~~g--g~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g 174 (482)
T 2pgd_A 99 DGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP--SLMPG--GNKEAWPHIKAIFQGIAAKVGTGEPCCDWVG 174 (482)
T ss_dssp ECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC--EEEEE--ECTTTHHHHHHHHHHHSCBCTTSCBSCCCCE
T ss_pred ECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC--eEEeC--CCHHHHHHHHHHHHHhhhhccCCCcceEEEC
Confidence 765555432 3444443 234566543222221 233 23444 25778999999999999886 5554
Q ss_pred cccccc----HHHHHH---HHHHHHHHHHHHcC-CCCHHHHHHHHH
Q psy13746 236 TEIRGF----ALNRIQ---FAVLNECYHLVHDG-VLSAKDIDRVMS 273 (294)
Q Consensus 236 ~~~~g~----v~nri~---~a~~~Ea~~l~~~~-~~~~~~id~a~~ 273 (294)
..+.|. +.|.+. ..+++|++.++++. |++++++..++.
T Consensus 175 ~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~ 220 (482)
T 2pgd_A 175 DDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFE 220 (482)
T ss_dssp ETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHH
Confidence 444442 445443 35799999999999 999999988875
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-14 Score=126.77 Aligned_cols=144 Identities=19% Similarity=0.180 Sum_probs=110.7
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
+++|+|| |.||+++|..|++.|++|++||++++.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------------- 57 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------------- 57 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------------------------------------
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------------------------------------
Confidence 4689999 899999999999999999999988631
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+..+++++||+||.|+|.+. ..++++++.+.++++++|++
T Consensus 58 --------------------------------------~~~~~~~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~~ 97 (298)
T 2pv7_A 58 --------------------------------------VAESILANADVVIVSVPINL--TLETIERLKPYLTENMLLAD 97 (298)
T ss_dssp --------------------------------------GHHHHHTTCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEE
T ss_pred --------------------------------------CHHHHhcCCCEEEEeCCHHH--HHHHHHHHHhhcCCCcEEEE
Confidence 22346789999999999876 66888999998999998876
Q ss_pred cCCCCCHH---HHHhhcCCCCceeeeeecCCCC----CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccH
Q psy13746 170 STSSFLPS---VLSEHSTHRSQFIVAHPVNPPY----FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA 242 (294)
Q Consensus 170 ~tSt~~~~---~ia~~l~~~~~~ig~h~~~p~~----~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v 242 (294)
.+| .... .+... .+.++++.||+.++. .+..+.++++. +++.++.++++|+.+|.++++++++.++.+
T Consensus 98 ~~s-vk~~~~~~~~~~--~~~~~v~~hP~~g~~~~~~~g~~~~l~~~~--~~~~~~~v~~l~~~~G~~~~~~~~~~~d~~ 172 (298)
T 2pv7_A 98 LTS-VKREPLAKMLEV--HTGAVLGLHPMFGADIASMAKQVVVRCDGR--FPERYEWLLEQIQIWGAKIYQTNATEHDHN 172 (298)
T ss_dssp CCS-CCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTTCEEEEEEEE--CGGGTHHHHHHHHHTTCEEEECCHHHHHHH
T ss_pred CCC-CCcHHHHHHHHh--cCCCEEeeCCCCCCCchhhcCCeEEEecCC--CHHHHHHHHHHHHHcCCEEEECCHHHHHHH
Confidence 554 3333 33333 257899999987543 34566677763 678899999999999999988865555544
Q ss_pred HH
Q psy13746 243 LN 244 (294)
Q Consensus 243 ~n 244 (294)
..
T Consensus 173 ~a 174 (298)
T 2pv7_A 173 MT 174 (298)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=121.34 Aligned_cols=181 Identities=17% Similarity=0.094 Sum_probs=123.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeC--ChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDV--LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
++|+|| |.||++||..|+++|++|++||+ +++.++++.+
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~------------------------------------- 43 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART------------------------------------- 43 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-------------------------------------
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHH-------------------------------------
Confidence 379999 99999999999999999999998 6555443221
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| ++ +++.++++++|+||.|+|++...+. +.++.+.+++ +|++
T Consensus 44 -----------------~g--------------~~--~~~~~~~~~aDvvi~~v~~~~~~~~--~~~~~~~~~~--~vi~ 86 (264)
T 1i36_A 44 -----------------VG--------------VT--ETSEEDVYSCPVVISAVTPGVALGA--ARRAGRHVRG--IYVD 86 (264)
T ss_dssp -----------------HT--------------CE--ECCHHHHHTSSEEEECSCGGGHHHH--HHHHHTTCCS--EEEE
T ss_pred -----------------CC--------------Cc--CCHHHHHhcCCEEEEECCCHHHHHH--HHHHHHhcCc--EEEE
Confidence 12 22 4566678999999999999765433 3567777766 5554
Q ss_pred cCCCCCHH---HHHhhcCCCCceeeeeecCCCC---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc--
Q psy13746 170 STSSFLPS---VLSEHSTHRSQFIVAHPVNPPY---FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF-- 241 (294)
Q Consensus 170 ~tSt~~~~---~ia~~l~~~~~~ig~h~~~p~~---~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~-- 241 (294)
.|+..+. .+++.+.... |+..+.+.++. .+.+ .+++++. + +.+++ |+.+|+.+++++ +..|.
T Consensus 87 -~s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~-~~~~g~~---~--~~~~~-l~~~g~~~~~~~-~~~g~~~ 156 (264)
T 1i36_A 87 -INNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIR-IIASGRD---A--EEFMK-LNRYGLNIEVRG-REPGDAS 156 (264)
T ss_dssp -CSCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCE-EEEESTT---H--HHHHG-GGGGTCEEEECS-SSTTHHH
T ss_pred -ccCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCe-EEecCCc---H--HHhhh-HHHcCCeeEECC-CCcCHHH
Confidence 3555543 5666665443 66665554432 2344 5556532 2 77888 999999988885 32332
Q ss_pred ---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCC
Q psy13746 242 ---ALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLR 279 (294)
Q Consensus 242 ---v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~ 279 (294)
+.++.+ ...++|++.++++.|++++ ....+...+|..
T Consensus 157 ~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~ 200 (264)
T 1i36_A 157 AIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGND 200 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCcc
Confidence 344443 4578999999999999986 556666544533
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=123.37 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=109.1
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEE-EeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSL-YDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~-~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
|.++||+|| |.||+.+|..|+++|++|++ ||++++++++..+..
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~--------------------------------- 67 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRF--------------------------------- 67 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHH---------------------------------
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHh---------------------------------
Confidence 456799999 99999999999999999999 999998877643321
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
| +..+.+..++++++|+||.|+|... ..++++++.+ + ++++|
T Consensus 68 --------------------g--------------~~~~~~~~~~~~~aDvVilavp~~~--~~~v~~~l~~-~-~~~iv 109 (220)
T 4huj_A 68 --------------------G--------------ASVKAVELKDALQADVVILAVPYDS--IADIVTQVSD-W-GGQIV 109 (220)
T ss_dssp --------------------T--------------TTEEECCHHHHTTSSEEEEESCGGG--HHHHHTTCSC-C-TTCEE
T ss_pred --------------------C--------------CCcccChHHHHhcCCEEEEeCChHH--HHHHHHHhhc-c-CCCEE
Confidence 1 0112233346899999999999654 5678888766 4 47788
Q ss_pred EecCCCC--------------CHHHHHhhcCCCCceeeeeecCCCC---------CCCeEEEecCCCCCHHHHHHHHHHH
Q psy13746 168 SSSTSSF--------------LPSVLSEHSTHRSQFIVAHPVNPPY---------FIPLVEIVPAAWTSERVITRTREIM 224 (294)
Q Consensus 168 ~s~tSt~--------------~~~~ia~~l~~~~~~ig~h~~~p~~---------~~~lveiv~g~~t~~e~~~~~~~ll 224 (294)
++.+.++ ..+.+++.++ ..+++...++.|.. ..+...++.+ .+++..+.+++++
T Consensus 110 i~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~ 186 (220)
T 4huj_A 110 VDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPAAVLAADPDKGTGSRVLFLSG--NHSDANRQVAELI 186 (220)
T ss_dssp EECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCHHHHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHH
T ss_pred EEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCHHHhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHH
Confidence 7777666 3456666664 34666665544431 1123445555 4799999999999
Q ss_pred HHcCCeeEEEcc
Q psy13746 225 TEIGMKPVTLTT 236 (294)
Q Consensus 225 ~~lG~~~v~v~~ 236 (294)
+.+|++++.+++
T Consensus 187 ~~~G~~~~~~G~ 198 (220)
T 4huj_A 187 SSLGFAPVDLGT 198 (220)
T ss_dssp HHTTCEEEECCS
T ss_pred HHhCCCeEeeCC
Confidence 999999999863
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=127.16 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=124.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH-HHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.++|+|| |.||+++|..|+..|++|+++|++++. .+.+.+
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~------------------------------------- 58 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEA------------------------------------- 58 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHH-------------------------------------
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHH-------------------------------------
Confidence 3689999 999999999999999999999999765 322211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH-HHhcccCCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR-AIDIFMSSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~-~l~~~~~~~~ii~ 168 (294)
.| +..+ ++.+++++||+||.|+|.... ..++. ++.+.++++++|+
T Consensus 59 -----------------~G--------------~~~~-~~~e~~~~aDvVilavp~~~~--~~v~~~~i~~~l~~~~ivi 104 (338)
T 1np3_A 59 -----------------HG--------------LKVA-DVKTAVAAADVVMILTPDEFQ--GRLYKEEIEPNLKKGATLA 104 (338)
T ss_dssp -----------------TT--------------CEEE-CHHHHHHTCSEEEECSCHHHH--HHHHHHHTGGGCCTTCEEE
T ss_pred -----------------CC--------------CEEc-cHHHHHhcCCEEEEeCCcHHH--HHHHHHHHHhhCCCCCEEE
Confidence 12 2334 777788999999999998764 57887 8999999999988
Q ss_pred ecCCCCCHHHHHhhc-CCCCceeeeeecCCCC-------C--CCeEEEecCCCCCHHHHHHHHHHHHHcCC-e--eEEEc
Q psy13746 169 SSTSSFLPSVLSEHS-THRSQFIVAHPVNPPY-------F--IPLVEIVPAAWTSERVITRTREIMTEIGM-K--PVTLT 235 (294)
Q Consensus 169 s~tSt~~~~~ia~~l-~~~~~~ig~h~~~p~~-------~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~-~--~v~v~ 235 (294)
+. +++.+ .+.... ....++++.||..|.. . +..+.++++..++++.++.++.+++.+|. + ++.+.
T Consensus 105 ~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~ 182 (338)
T 1np3_A 105 FA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRTGIIETT 182 (338)
T ss_dssp ES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEECC
T ss_pred Ec-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHHHHHHcCCCccceEeec
Confidence 65 44443 332222 1223589999977653 1 44555677666788899999999999998 5 66663
Q ss_pred cccc----ccHHHHH----HHHHHHHHHHHHHcCCCCHHH
Q psy13746 236 TEIR----GFALNRI----QFAVLNECYHLVHDGVLSAKD 267 (294)
Q Consensus 236 ~~~~----g~v~nri----~~a~~~Ea~~l~~~~~~~~~~ 267 (294)
.+.+ .+..+.. +-.++..++..+.+.|+++++
T Consensus 183 ~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~ 222 (338)
T 1np3_A 183 FKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEM 222 (338)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred hhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH
Confidence 2222 2222222 223444445444566677764
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-13 Score=117.50 Aligned_cols=179 Identities=9% Similarity=0.096 Sum_probs=107.5
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH-HHH-HHHHHHhhhhhhhhcccccCCCCCccCCceeEEeec
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ-IEN-AKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDV 85 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~-~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 85 (294)
....++|+|| |.||++||..|+++|++|++|||++++ +.+ ....+.+
T Consensus 16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~----------------------------- 66 (245)
T 3dtt_A 16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGA----------------------------- 66 (245)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC------------------------------------
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcc-----------------------------
Confidence 3445799999 999999999999999999999999886 111 0000000
Q ss_pred chHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHH-hcccCCC
Q psy13746 86 LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAI-DIFMSSN 164 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l-~~~~~~~ 164 (294)
..+.++.+. .... ...++.+++++||+||.|+|.+... +++.++ .+.+ ++
T Consensus 67 -------------~~~~~~~~~------------~~~~-~~~~~~e~~~~aDvVilavp~~~~~--~~~~~i~~~~l-~g 117 (245)
T 3dtt_A 67 -------------PPFSQWLPE------------HPHV-HLAAFADVAAGAELVVNATEGASSI--AALTAAGAENL-AG 117 (245)
T ss_dssp -------------CCHHHHGGG------------STTC-EEEEHHHHHHHCSEEEECSCGGGHH--HHHHHHCHHHH-TT
T ss_pred -------------hhhhHHHhh------------cCce-eccCHHHHHhcCCEEEEccCcHHHH--HHHHHhhhhhc-CC
Confidence 000001110 0112 2456777889999999999987643 566667 5666 67
Q ss_pred eEEEecCCC----------C------CH-HHHHhhcCCCCceee-eeecCC-----C---CCCCeEEEecCCCCCHHHHH
Q psy13746 165 TILSSSTSS----------F------LP-SVLSEHSTHRSQFIV-AHPVNP-----P---YFIPLVEIVPAAWTSERVIT 218 (294)
Q Consensus 165 ~ii~s~tSt----------~------~~-~~ia~~l~~~~~~ig-~h~~~p-----~---~~~~lveiv~g~~t~~e~~~ 218 (294)
++|++.+.+ + .. +.+++.++. .+++. ++++.. + ..+++..++.| .+++.++
T Consensus 118 ~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~-~~vv~~~~~~~a~v~~~~~~a~~g~~~~~v~g--~d~~~~~ 194 (245)
T 3dtt_A 118 KILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE-AKVVKTLNTMNASLMVDPGRAAGGDHSVFVSG--NDAAAKA 194 (245)
T ss_dssp SEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTT-SEEEECSTTSCHHHHHCGGGTGGGCCCEEEEC--SCHHHHH
T ss_pred CEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCC-CeEEEeecccCHHHhcCccccCCCCeeEEEEC--CCHHHHH
Confidence 777766521 1 22 245555532 34443 333321 1 12344455566 3789999
Q ss_pred HHHHHHHHcCCe-eEEEccccccc---HHHHHHHH
Q psy13746 219 RTREIMTEIGMK-PVTLTTEIRGF---ALNRIQFA 249 (294)
Q Consensus 219 ~~~~ll~~lG~~-~v~v~~~~~g~---v~nri~~a 249 (294)
.++++|+.+|.+ ++++++-..|. +.|+++..
T Consensus 195 ~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~ 229 (245)
T 3dtt_A 195 EVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIR 229 (245)
T ss_dssp HHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHH
T ss_pred HHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHH
Confidence 999999999986 47786444443 34444443
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-13 Score=113.72 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=114.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|+ |.||+.+|..|++.|++|+++|+++++.++..+.+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~----------------------------------- 45 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR----------------------------------- 45 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH-----------------------------------
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----------------------------------
Confidence 378999 899999999999999999999999988765433211
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
..+.. ..+. .+++.++++++|+||.|+|.+. ..+++.++.+.++ ++++++.
T Consensus 46 ------------~~~~~-------------~~~~-~~~~~~~~~~~D~Vi~~~~~~~--~~~~~~~l~~~~~-~~~vi~~ 96 (212)
T 1jay_A 46 ------------RIAGD-------------ASIT-GMKNEDAAEACDIAVLTIPWEH--AIDTARDLKNILR-EKIVVSP 96 (212)
T ss_dssp ------------HHHSS-------------CCEE-EEEHHHHHHHCSEEEECSCHHH--HHHHHHHTHHHHT-TSEEEEC
T ss_pred ------------ccccc-------------CCCC-hhhHHHHHhcCCEEEEeCChhh--HHHHHHHHHHHcC-CCEEEEc
Confidence 00000 1133 2567677899999999999754 3477788877674 8888888
Q ss_pred CCCCC--------------HHHHHhhcCCCCceeeeeecCCC-------CCCCeEEEecCCCCCHHHHHHHHHHHHHc-C
Q psy13746 171 TSSFL--------------PSVLSEHSTHRSQFIVAHPVNPP-------YFIPLVEIVPAAWTSERVITRTREIMTEI-G 228 (294)
Q Consensus 171 tSt~~--------------~~~ia~~l~~~~~~ig~h~~~p~-------~~~~lveiv~g~~t~~e~~~~~~~ll~~l-G 228 (294)
++++. .+++++.++ ..+++..++..|. ..+.+..+++++ +++.++.++++++.+ |
T Consensus 97 ~~g~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G 173 (212)
T 1jay_A 97 LVPVSRGAKGFTYSSERSAAEIVAEVLE-SEKVVSALHTIPAARFANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDG 173 (212)
T ss_dssp CCCEECCTTCCEECCSSCHHHHHHHHHT-CSCEEECCTTCCHHHHHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTT
T ss_pred CCCcCcCCceeecCCCCcHHHHHHHhCC-CCeEEEEccchHHHHhhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCC
Confidence 87665 567777665 3677776543331 223466677774 689999999999999 9
Q ss_pred CeeEEEcccccc
Q psy13746 229 MKPVTLTTEIRG 240 (294)
Q Consensus 229 ~~~v~v~~~~~g 240 (294)
+.++++++...+
T Consensus 174 ~~~~~~~~~~~a 185 (212)
T 1jay_A 174 LRPLDAGPLSNS 185 (212)
T ss_dssp EEEEEEESGGGH
T ss_pred CCceeccchhHH
Confidence 999998643333
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-13 Score=124.52 Aligned_cols=196 Identities=15% Similarity=0.124 Sum_probs=124.9
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||.+||..|+++|++|++||++++.++...+...+ ..|
T Consensus 15 M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~--~~~----------------------------- 63 (366)
T 1evy_A 15 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKREN--VLF----------------------------- 63 (366)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBC--TTT-----------------------------
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcc--ccc-----------------------------
Confidence 3489999 9999999999999999999999999887765432100 000
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHH----HhcccCC-Ce
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRA----IDIFMSS-NT 165 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~----l~~~~~~-~~ 165 (294)
..+ .....++..++++.++++++|+||.|+|.. ...+++.+ +.+.+++ ++
T Consensus 64 -------------------~~~----~~~~~~~~~~~~~~~~~~~aDvVilav~~~--~~~~v~~~~~~gl~~~l~~~~~ 118 (366)
T 1evy_A 64 -------------------LKG----VQLASNITFTSDVEKAYNGAEIILFVIPTQ--FLRGFFEKSGGNLIAYAKEKQV 118 (366)
T ss_dssp -------------------STT----CBCCTTEEEESCHHHHHTTCSSEEECCCHH--HHHHHHHHHCHHHHHHHHHHTC
T ss_pred -------------------ccc----cccccceeeeCCHHHHHcCCCEEEECCChH--HHHHHHHHhHHHHHHhcCccCC
Confidence 000 001123566778888889999999999973 35678888 8888888 88
Q ss_pred EEEecCCCCCHH---HHHhhcCC--CCceeeeeecCCCC-----CCC-eEEEecCCCCCHHHHHHHHHHHHHc--CCeeE
Q psy13746 166 ILSSSTSSFLPS---VLSEHSTH--RSQFIVAHPVNPPY-----FIP-LVEIVPAAWTSERVITRTREIMTEI--GMKPV 232 (294)
Q Consensus 166 ii~s~tSt~~~~---~ia~~l~~--~~~~ig~h~~~p~~-----~~~-lveiv~g~~t~~e~~~~~~~ll~~l--G~~~v 232 (294)
+|++.+.++.++ .+.+.+.. +...... ...|.. .+. ...++.+ .+++.++.++++|+.. |.+++
T Consensus 119 ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v-~~gp~~~~~~~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~g~~~~ 195 (366)
T 1evy_A 119 PVLVCTKGIERSTLKFPAEIIGEFLPSPLLSV-LAGPSFAIEVATGVFTCVSIAS--ADINVARRLQRIMSTGDRSFVCW 195 (366)
T ss_dssp CEEECCCSCCTTTCCCHHHHHTTTSCGGGEEE-EESSCCHHHHHTTCCEEEEEEC--SSHHHHHHHHHHHSCTTSSEEEE
T ss_pred EEEEECCcCCCccccCHHHHHHHHCCCCcEEE-EeCCChHHHHHhCCceEEEEec--CCHHHHHHHHHHhcCCCCeEEEE
Confidence 888777666543 22222221 1110010 111211 122 2223333 4788899999999999 77766
Q ss_pred EEcccccc-----cHH----------------HHH----HHHHHHHHHHHHHcCCCCHHHH
Q psy13746 233 TLTTEIRG-----FAL----------------NRI----QFAVLNECYHLVHDGVLSAKDI 268 (294)
Q Consensus 233 ~v~~~~~g-----~v~----------------nri----~~a~~~Ea~~l~~~~~~~~~~i 268 (294)
+. .+..+ .+. |+. +...++|++.++++.|++++++
T Consensus 196 ~~-~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~~~~ 255 (366)
T 1evy_A 196 AT-TDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAV 255 (366)
T ss_dssp EE-SCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCCTTT
T ss_pred Ec-CCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 65 34322 111 222 2357899999999999987654
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=119.94 Aligned_cols=198 Identities=14% Similarity=0.050 Sum_probs=126.8
Q ss_pred CCccceEEE--ccccHHHHHHHHHCC-------CeEEEEeCChH-----HHHHHHHHHHhhhhhhhhcccccCCCCCccC
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAG-------YKVSLYDVLSE-----QIENAKNTIQHTLQDYHQKGCLKGSLSPAHA 76 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G-------~~V~~~d~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 76 (294)
|..++|+|| |.||++||..|+++| ++|++||++++ ..+...+...+ ..|
T Consensus 6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~--~~~--------------- 68 (354)
T 1x0v_A 6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN--VKY--------------- 68 (354)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCC--TTT---------------
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcc--ccc---------------
Confidence 555799999 999999999999999 99999999987 55543321000 000
Q ss_pred CceeEEeecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHH
Q psy13746 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRA 156 (294)
Q Consensus 77 ~~~v~~~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~ 156 (294)
.++ .....++..++++.++++++|+||+|+|+.. ..+++++
T Consensus 69 ---------------------------------~~~----~~~~~~~~~~~~~~~~~~~aD~Vilav~~~~--~~~v~~~ 109 (354)
T 1x0v_A 69 ---------------------------------LPG----HKLPPNVVAVPDVVQAAEDADILIFVVPHQF--IGKICDQ 109 (354)
T ss_dssp ---------------------------------STT----CCCCTTEEEESSHHHHHTTCSEEEECCCGGG--HHHHHHH
T ss_pred ---------------------------------CCc----ccCccCeEEEcCHHHHHcCCCEEEEeCCHHH--HHHHHHH
Confidence 000 0011235667888888899999999999853 6788999
Q ss_pred HhcccCCCeEEEecCCCCCH-----HHH----HhhcCCCCceeeeeecCCCC--CCC-eEEEecCCCCCHHHHHHHHHHH
Q psy13746 157 IDIFMSSNTILSSSTSSFLP-----SVL----SEHSTHRSQFIVAHPVNPPY--FIP-LVEIVPAAWTSERVITRTREIM 224 (294)
Q Consensus 157 l~~~~~~~~ii~s~tSt~~~-----~~i----a~~l~~~~~~ig~h~~~p~~--~~~-lveiv~g~~t~~e~~~~~~~ll 224 (294)
+.+.++++++|++.++++.+ ..+ .+.+.++. .+-..|..+.. .+. ...++.+ .+++..+.++++|
T Consensus 110 i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~-~v~~gp~~a~~v~~g~~~~~~~~~--~~~~~~~~v~~ll 186 (354)
T 1x0v_A 110 LKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPM-SVLMGANIASEVADEKFCETTIGC--KDPAQGQLLKELM 186 (354)
T ss_dssp HTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCE-EEEECSCCHHHHHTTCCEEEEEEC--SSHHHHHHHHHHH
T ss_pred HHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCE-EEEECCCcHHHHHhcCCceEEEEE--CCHHHHHHHHHHh
Confidence 99999999999888877653 122 22222111 11111111111 122 2223333 4688899999999
Q ss_pred HHcCCeeEEEcccccc-----cH-----------------HHH---HHHHHHHHHHHHHHcCCC---CHHHH
Q psy13746 225 TEIGMKPVTLTTEIRG-----FA-----------------LNR---IQFAVLNECYHLVHDGVL---SAKDI 268 (294)
Q Consensus 225 ~~lG~~~v~v~~~~~g-----~v-----------------~nr---i~~a~~~Ea~~l~~~~~~---~~~~i 268 (294)
+..|.++.+. .|..+ .+ .|. ++...++|+.++++..|+ +++++
T Consensus 187 ~~~g~~~~~~-~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~~la~a~G~~~~~~~~~ 257 (354)
T 1x0v_A 187 QTPNFRITVV-QEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATF 257 (354)
T ss_dssp CBTTEEEEEE-SCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGG
T ss_pred CCCCEEEEEc-CCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Confidence 9999887776 34322 11 221 223578999999999988 77654
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-11 Score=115.91 Aligned_cols=207 Identities=15% Similarity=0.162 Sum_probs=127.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||..+|..|++ |++|++||+++++++...+... + +++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~-----------------------~--i~e------- 47 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLS-----------------------P--IQD------- 47 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCC-----------------------S--SCC-------
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCC-----------------------C--cCC-------
Confidence 379999 9999999999999 9999999999998876543210 0 000
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch---------HHHHHHHHHHhcccC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL---------QIKHQVYRAIDIFMS 162 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~---------~~k~~~~~~l~~~~~ 162 (294)
..+..++..+ ..++++++++.+++++||+||.|+|.+. ....++++++.+ ++
T Consensus 48 -------~~l~~~~~~~-----------~~~l~~t~~~~~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~ 108 (402)
T 1dlj_A 48 -------EYIEYYLKSK-----------QLSIKATLDSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VN 108 (402)
T ss_dssp -------HHHHHHHHHS-----------CCCEEEESCHHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HC
T ss_pred -------CCHHHHHHhc-----------cCcEEEeCCHHHHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hC
Confidence 0111111110 1246777888778899999999999873 135677788888 88
Q ss_pred CCeEEEecCCCCCHH---HHHhhcCCCCceeeeeec--CCCCC-----CCeEEEecCCCCC----HHHHHHHHHHHHHcC
Q psy13746 163 SNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHPV--NPPYF-----IPLVEIVPAAWTS----ERVITRTREIMTEIG 228 (294)
Q Consensus 163 ~~~ii~s~tSt~~~~---~ia~~l~~~~~~ig~h~~--~p~~~-----~~lveiv~g~~t~----~e~~~~~~~ll~~lG 228 (294)
++++|+. .|+.++. .+.+.+.. +.+...|- .|-.. ...-.++++.... .+..+.+.+++..-+
T Consensus 109 ~~~iVV~-~ST~~~g~~~~l~~~~~~--~~v~~~Pe~~~~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~ 185 (402)
T 1dlj_A 109 SHATLII-KSTIPIGFITEMRQKFQT--DRIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAA 185 (402)
T ss_dssp SSCEEEE-CSCCCTTHHHHHHHHTTC--SCEEECCCCCCTTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEE-eCCCCccHHHHHHHHhCC--CeEEECCccccCcchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhh
Confidence 8888874 3344333 44444432 22322221 11110 0111234443211 155677778887533
Q ss_pred C--e-eEEEccccc----ccHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHcc
Q psy13746 229 M--K-PVTLTTEIR----GFALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMSEG 275 (294)
Q Consensus 229 ~--~-~v~v~~~~~----g~v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~~g 275 (294)
. . +++++.-.. +++.|.+. .++++|+..++++.|+|+.++..++..+
T Consensus 186 ~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~ 242 (402)
T 1dlj_A 186 KKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYD 242 (402)
T ss_dssp SCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTS
T ss_pred ccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccC
Confidence 2 2 456542122 23445443 3689999999999999999999998643
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-12 Score=118.53 Aligned_cols=202 Identities=14% Similarity=0.026 Sum_probs=127.6
Q ss_pred CCCCCCccceEEE--ccccHHHHHHHHHCC-------CeEEEEeCChH-----HHHHHHHHHHhhhhhhhhcccccCCCC
Q psy13746 7 FPAQGGFYPDGII--GLIGQAWAMIFASAG-------YKVSLYDVLSE-----QIENAKNTIQHTLQDYHQKGCLKGSLS 72 (294)
Q Consensus 7 ~~~~~~~~~i~ii--G~mG~~iA~~~~~~G-------~~V~~~d~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~ 72 (294)
|+..| ++||+|| |.||++||..|+++| ++|++||++++ .++...+...+ ..|
T Consensus 16 ~~~~~-~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~--~~~----------- 81 (375)
T 1yj8_A 16 KLKDG-PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHEN--TKY----------- 81 (375)
T ss_dssp HHHHS-CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBC--TTT-----------
T ss_pred cCccC-CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcc--ccc-----------
Confidence 34443 3689999 999999999999999 99999999987 55443221100 000
Q ss_pred CccCCceeEEeecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHH
Q psy13746 73 PAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQ 152 (294)
Q Consensus 73 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~ 152 (294)
.++ .....++..++++.++++++|+||+|+|+. ..++
T Consensus 82 -------------------------------------~~~----~~~~~~i~~~~~~~ea~~~aDvVilav~~~--~~~~ 118 (375)
T 1yj8_A 82 -------------------------------------LKG----VPLPHNIVAHSDLASVINDADLLIFIVPCQ--YLES 118 (375)
T ss_dssp -------------------------------------STT----CBCCTTEEEESSTHHHHTTCSEEEECCCHH--HHHH
T ss_pred -------------------------------------CCc----ccCcCCeEEECCHHHHHcCCCEEEEcCCHH--HHHH
Confidence 000 011134667788888889999999999974 4678
Q ss_pred HHHHHhc----ccCCCeEEEecCCCCCH-----HHHHhhcC--CCCce-eeeeecCCC--CCC-CeEEEecCCCCCHHHH
Q psy13746 153 VYRAIDI----FMSSNTILSSSTSSFLP-----SVLSEHST--HRSQF-IVAHPVNPP--YFI-PLVEIVPAAWTSERVI 217 (294)
Q Consensus 153 ~~~~l~~----~~~~~~ii~s~tSt~~~-----~~ia~~l~--~~~~~-ig~h~~~p~--~~~-~lveiv~g~~t~~e~~ 217 (294)
+++++.+ .++++++|++.++++.+ ..+.+.+. .+..+ +-..|..+. ..+ ....++.+ .+++..
T Consensus 119 vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~v~~g~~~~~~~~~--~~~~~~ 196 (375)
T 1yj8_A 119 VLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAMDVAMENFSEATIGG--NDKDSL 196 (375)
T ss_dssp HHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCHHHHHTTCCEEEEEEC--SCHHHH
T ss_pred HHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchHHHHHhCCCeEEEEec--CCHHHH
Confidence 8899988 88999999888777654 12222221 01111 111111111 012 22223333 477889
Q ss_pred HHHHHHHHHcCCeeEEEcccccc-----cH-----------------HHHH---HHHHHHHHHHHHHcC--CCCHHHH
Q psy13746 218 TRTREIMTEIGMKPVTLTTEIRG-----FA-----------------LNRI---QFAVLNECYHLVHDG--VLSAKDI 268 (294)
Q Consensus 218 ~~~~~ll~~lG~~~v~v~~~~~g-----~v-----------------~nri---~~a~~~Ea~~l~~~~--~~~~~~i 268 (294)
+.++++|+..|.++.+. .|..+ .+ .|.. +...++|+.++++.. +++++++
T Consensus 197 ~~v~~ll~~~g~~~~~~-~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~~~la~a~G~G~~~~~~ 273 (375)
T 1yj8_A 197 VIWQRVFDLPYFKINCV-NETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENIL 273 (375)
T ss_dssp HHHHHHHCBTTEEEEEE-SCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGG
T ss_pred HHHHHHhCCCCeEEEEe-CCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHhccCCCcchh
Confidence 99999999999888776 35432 11 1211 234689999999988 5887665
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-13 Score=105.24 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=49.8
Q ss_pred HcCCeeE-EEcccccccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 226 EIGMKPV-TLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 226 ~lG~~~v-~v~~~~~g~v~nri~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
.++|.++ .+ +|.+|++.||++.++++||++++++|.++++|||.+++.|+||| +|||+++|.+|
T Consensus 3 ~~~K~~v~~~-~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p---~GPf~~~D~~G 67 (110)
T 3ctv_A 3 SKGRPQIDSS-KATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRP---FGPFELAKQFG 67 (110)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCS---SCHHHHHHHHC
T ss_pred CCCCCCcccC-CCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCC---ccHHHHHHHHH
Confidence 3677888 55 79999999999999999999999999999999999999999999 79999999987
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.9e-12 Score=107.97 Aligned_cols=155 Identities=13% Similarity=0.098 Sum_probs=103.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
.++|+|| |.||+.+|..|++.|++|+++|+++++++...+
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~-------------------------------------- 69 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFP-------------------------------------- 69 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSB--------------------------------------
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------------------------------------
Confidence 3689999 999999999999999999999999877553210
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| ++.+ ++.++++++|+||.|+|.+. ...+++ +.... ++++|++.
T Consensus 70 ----------------~g--------------~~~~-~~~~~~~~~DvVi~av~~~~--~~~v~~-l~~~~-~~~~vv~~ 114 (215)
T 2vns_A 70 ----------------SA--------------AQVT-FQEEAVSSPEVIFVAVFREH--YSSLCS-LSDQL-AGKILVDV 114 (215)
T ss_dssp ----------------TT--------------SEEE-EHHHHTTSCSEEEECSCGGG--SGGGGG-GHHHH-TTCEEEEC
T ss_pred ----------------cC--------------Ccee-cHHHHHhCCCEEEECCChHH--HHHHHH-HHHhc-CCCEEEEe
Confidence 11 2333 66677899999999999753 334444 55555 68888888
Q ss_pred CCCCCHHHHH----------hhcCCCCceeee-eec-----CC-CCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q psy13746 171 TSSFLPSVLS----------EHSTHRSQFIVA-HPV-----NP-PYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT 233 (294)
Q Consensus 171 tSt~~~~~ia----------~~l~~~~~~ig~-h~~-----~p-~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~ 233 (294)
+++...+.+. +.++ ..++++. +++ .+ ...++...++.+ .+++.++.++++|+.+|.++++
T Consensus 115 s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~ 191 (215)
T 2vns_A 115 SNPTEQEHLQHRESNAEYLASLFP-TCTVVKAFNVISAWTLQAGPRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVD 191 (215)
T ss_dssp CCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEECTTBCHHHHHTCSCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcccccccccccHHHHHHHHCC-CCeEEeccccccHhHhcccccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEe
Confidence 8887665442 3332 2234332 111 11 111233234444 4789999999999999999999
Q ss_pred EcccccccHH
Q psy13746 234 LTTEIRGFAL 243 (294)
Q Consensus 234 v~~~~~g~v~ 243 (294)
+++.+.|...
T Consensus 192 ~g~~~~~~~~ 201 (215)
T 2vns_A 192 MGSLASAWEV 201 (215)
T ss_dssp CCSGGGHHHH
T ss_pred ecchhhhhHh
Confidence 9644444433
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-11 Score=109.93 Aligned_cols=192 Identities=15% Similarity=0.066 Sum_probs=124.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeC--ChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDV--LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
++|+|| |.||+.+|..|+++|++|++||+ +++.++...+.
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~------------------------------------ 44 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAG------------------------------------ 44 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTT------------------------------------
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHh------------------------------------
Confidence 379999 99999999999999999999999 88876654321
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeecc--ChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP--VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~--~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
|... .. ... +.++..++ ++.++++++|+||.|+|.+. ..+++.++.+ ++++++|
T Consensus 45 ------------------~~~~-~~-g~~-~~~~~~~~~~~~~~~~~~~D~vi~~v~~~~--~~~v~~~i~~-l~~~~~v 100 (335)
T 1txg_A 45 ------------------REHP-RL-GVK-LNGVEIFWPEQLEKCLENAEVVLLGVSTDG--VLPVMSRILP-YLKDQYI 100 (335)
T ss_dssp ------------------CCBT-TT-TBC-CCSEEEECGGGHHHHHTTCSEEEECSCGGG--HHHHHHHHTT-TCCSCEE
T ss_pred ------------------CcCc-cc-Ccc-ccceEEecHHhHHHHHhcCCEEEEcCChHH--HHHHHHHHhc-CCCCCEE
Confidence 1000 00 000 02234555 77777899999999999874 5678889988 8889888
Q ss_pred EecCCCC---C---HHHHHhhcCC--CCceeeeeecCCCC---C--CC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q psy13746 168 SSSTSSF---L---PSVLSEHSTH--RSQFIVAHPVNPPY---F--IP-LVEIVPAAWTSERVITRTREIMTEIGMKPVT 233 (294)
Q Consensus 168 ~s~tSt~---~---~~~ia~~l~~--~~~~ig~h~~~p~~---~--~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~ 233 (294)
++.+.++ . ...+++.+.. +..+.......|.. . +. ...++.+ .+++.++.++++|+..|.++.+
T Consensus 101 v~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~ll~~~g~~~~~ 178 (335)
T 1txg_A 101 VLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSS--PSESSANKMKEIFETEYFGVEV 178 (335)
T ss_dssp EECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEEC--SCHHHHHHHHHHHCBTTEEEEE
T ss_pred EEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHHHccCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEe
Confidence 7766555 2 2355555542 11011111122221 1 22 2223333 3688899999999999988777
Q ss_pred Ecccccc---------------------cH------HHHH---HHHHHHHHHHHHHcCCCCHHHH
Q psy13746 234 LTTEIRG---------------------FA------LNRI---QFAVLNECYHLVHDGVLSAKDI 268 (294)
Q Consensus 234 v~~~~~g---------------------~v------~nri---~~a~~~Ea~~l~~~~~~~~~~i 268 (294)
. .+..+ .. .|.. +...++|++.++++.|++++++
T Consensus 179 ~-~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~ 242 (335)
T 1txg_A 179 T-TDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETA 242 (335)
T ss_dssp E-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred c-CchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcchh
Confidence 6 34311 11 2322 2357899999999999988765
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-10 Score=106.71 Aligned_cols=188 Identities=12% Similarity=0.072 Sum_probs=113.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||+.||..|+++|++|++|||++++++...+.-.+ . |
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~--~-~------------------------------ 61 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTS--P-Y------------------------------ 61 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCB--T-T------------------------------
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCc--c-c------------------------------
Confidence 589999 9999999999999999999999999887654332100 0 0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.++. .+ ++..++++.+ ++++|+||.|+|.. . -.+++.++.+ ++++|++.+
T Consensus 62 ------------------~~~~-----~~-~~~~~~~~~~-~~~aDvVil~vk~~-~-~~~v~~~l~~---~~~~vv~~~ 111 (335)
T 1z82_A 62 ------------------VEES-----KI-TVRATNDLEE-IKKEDILVIAIPVQ-Y-IREHLLRLPV---KPSMVLNLS 111 (335)
T ss_dssp ------------------BTTC-----CC-CSEEESCGGG-CCTTEEEEECSCGG-G-HHHHHTTCSS---CCSEEEECC
T ss_pred ------------------CCCC-----ee-eEEEeCCHHH-hcCCCEEEEECCHH-H-HHHHHHHhCc---CCCEEEEEe
Confidence 0000 00 3466778887 89999999999963 2 3456655544 677777666
Q ss_pred CCCCHH---HHHhhcC--CCCc-eeeeeecCCCC--CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc---
Q psy13746 172 SSFLPS---VLSEHST--HRSQ-FIVAHPVNPPY--FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG--- 240 (294)
Q Consensus 172 St~~~~---~ia~~l~--~~~~-~ig~h~~~p~~--~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g--- 240 (294)
.++.+. .+++.+. .+.. .+...|..+.. .+....++.+. .+ .+.++++|+..|.++.+. .|..+
T Consensus 112 nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~g~-~~---~~~~~~ll~~~g~~~~~~-~di~~~~~ 186 (335)
T 1z82_A 112 KGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAG-EN---SKELQKRISTEYFRVYTC-EDVVGVEI 186 (335)
T ss_dssp CCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEEEE-TT---HHHHHHHHCCSSEEEEEE-SCHHHHHH
T ss_pred CCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEEEe-hh---HHHHHHHhCCCCEEEEec-CchHHHHH
Confidence 555442 2333221 1100 11111111110 22222233331 12 678899999999887665 34321
Q ss_pred -------------------cHHH---HHHHHHHHHHHHHHHcCCCCHHHHH
Q psy13746 241 -------------------FALN---RIQFAVLNECYHLVHDGVLSAKDID 269 (294)
Q Consensus 241 -------------------~v~n---ri~~a~~~Ea~~l~~~~~~~~~~id 269 (294)
+..| .++..++.|++.++++.|++++++.
T Consensus 187 ~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~ 237 (335)
T 1z82_A 187 AGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFM 237 (335)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred HHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhc
Confidence 1112 1223578999999999999988763
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=109.13 Aligned_cols=186 Identities=11% Similarity=0.091 Sum_probs=118.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||+.+|..|+++|++|++||++++.++. +.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~----l~------------------------------------ 40 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCS----VN------------------------------------ 40 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEE----EE------------------------------------
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceee----EE------------------------------------
Confidence 379999 999999999999999999999999865432 10
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
..+. .+. ....++. .++. ++++++|+||.|+|.+. ..++++++.+.++++++|++.+
T Consensus 41 --------------~~~~-~~~----~~~~~~~-~~~~-~~~~~~d~vi~~v~~~~--~~~v~~~l~~~l~~~~~vv~~~ 97 (291)
T 1ks9_A 41 --------------LVET-DGS----IFNESLT-ANDP-DFLATSDLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIH 97 (291)
T ss_dssp --------------EECT-TSC----EEEEEEE-ESCH-HHHHTCSEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEEC
T ss_pred --------------EEcC-CCc----eeeeeee-ecCc-cccCCCCEEEEEecHHh--HHHHHHHHHhhCCCCCEEEEec
Confidence 0000 000 0000111 2344 46789999999999875 4678889999999888888776
Q ss_pred CCCCHH-HHHhhcCCCCceeeeeec------CC-C---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc
Q psy13746 172 SSFLPS-VLSEHSTHRSQFIVAHPV------NP-P---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 240 (294)
Q Consensus 172 St~~~~-~ia~~l~~~~~~ig~h~~------~p-~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g 240 (294)
.++... .+++.++ . ++..+.+ .| + ..+. +.+.... .+++.++.++++|+.+|..+.+. .+..+
T Consensus 98 ~g~~~~~~l~~~~~--~-~~~g~~~~~~~~~~p~~~~~~~g~-~~i~~~~-~~~~~~~~~~~ll~~~g~~~~~~-~~~~~ 171 (291)
T 1ks9_A 98 NGMGTIEELQNIQQ--P-LLMGTTTHAARRDGNVIIHVANGI-THIGPAR-QQDGDYSYLADILQTVLPDVAWH-NNIRA 171 (291)
T ss_dssp SSSCTTGGGTTCCS--C-EEEEEECCEEEEETTEEEEEECCC-EEEEESS-GGGTTCTHHHHHHHTTSSCEEEC-TTHHH
T ss_pred CCCCcHHHHHHhcC--C-eEEEEEeEccEEcCCEEEEecccc-eEEccCC-CCcchHHHHHHHHHhcCCCCeec-HHHHH
Confidence 666443 4444432 2 4433321 23 1 1122 3343322 35667888999999999988776 34322
Q ss_pred c-----HHHH---------------------HHHHHHHHHHHHHHcCCCCH--HHH
Q psy13746 241 F-----ALNR---------------------IQFAVLNECYHLVHDGVLSA--KDI 268 (294)
Q Consensus 241 ~-----v~nr---------------------i~~a~~~Ea~~l~~~~~~~~--~~i 268 (294)
. +.|. ++..++.|++.++++.|+++ +++
T Consensus 172 ~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~ 227 (291)
T 1ks9_A 172 ELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDL 227 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 1 2232 23457899999999988875 554
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=104.55 Aligned_cols=200 Identities=12% Similarity=0.077 Sum_probs=124.3
Q ss_pred cceEEE--ccccHHHHHHHHHC-----C-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeec
Q psy13746 14 YPDGII--GLIGQAWAMIFASA-----G-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDV 85 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~-----G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 85 (294)
++|+|| |.||+.+|..|+++ | ++|++||| ++.++...+.. |+.+ .+
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~----------------------g~~~--~~- 62 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAG----------------------GLRV--VT- 62 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHT----------------------SEEE--EC-
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcC----------------------CeEE--Ee-
Confidence 589999 99999999999999 9 99999999 76666543310 0000 00
Q ss_pred chHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCe
Q psy13746 86 LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNT 165 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ 165 (294)
..+ .....++..+++.+ ++.++|+||.|+|... -.++++++.+.+++++
T Consensus 63 ------------------------~~~----~~~~~~~~~~~~~~-~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~ 111 (317)
T 2qyt_A 63 ------------------------PSR----DFLARPTCVTDNPA-EVGTVDYILFCTKDYD--MERGVAEIRPMIGQNT 111 (317)
T ss_dssp ------------------------SSC----EEEECCSEEESCHH-HHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEE
T ss_pred ------------------------CCC----CeEEecceEecCcc-ccCCCCEEEEecCccc--HHHHHHHHHhhcCCCC
Confidence 000 00001133445554 5789999999999876 3678888988888888
Q ss_pred EEEecCCCCCH-HHHHhhcCCCCceeeeeecCCCCC---------CC-eEEEecC--CCCCHHHHHHHHHHHHHcCCeeE
Q psy13746 166 ILSSSTSSFLP-SVLSEHSTHRSQFIVAHPVNPPYF---------IP-LVEIVPA--AWTSERVITRTREIMTEIGMKPV 232 (294)
Q Consensus 166 ii~s~tSt~~~-~~ia~~l~~~~~~ig~h~~~p~~~---------~~-lveiv~g--~~t~~e~~~~~~~ll~~lG~~~v 232 (294)
+|++.+.++.. +.+++.++.. +++...++.+... +. .+.++.. +..+++.+ .+.++|+..|..+.
T Consensus 112 ~iv~~~nG~~~~~~l~~~l~~~-~v~~g~~~~~a~~~~pg~~~~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~ 189 (317)
T 2qyt_A 112 KILPLLNGADIAERMRTYLPDT-VVWKGCVYISARKSAPGLITLEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAY 189 (317)
T ss_dssp EEEECSCSSSHHHHHTTTSCTT-TBCEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEE
T ss_pred EEEEccCCCCcHHHHHHHCCCC-cEEEEEEEEEEEEcCCCEEEEcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCE
Confidence 88876667765 3555555432 3333322222111 11 1222432 23456777 89999999998876
Q ss_pred EEccccc-----ccHHHHH----------------------HHHHHHHHHHHHHcCCCCHH--HHHHHHH
Q psy13746 233 TLTTEIR-----GFALNRI----------------------QFAVLNECYHLVHDGVLSAK--DIDRVMS 273 (294)
Q Consensus 233 ~v~~~~~-----g~v~nri----------------------~~a~~~Ea~~l~~~~~~~~~--~id~a~~ 273 (294)
+. .+.. +++.|-+ +..++.|++.++++.|++++ .+...+.
T Consensus 190 ~~-~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~v~~a~G~~~~~~~~~~~~~ 258 (317)
T 2qyt_A 190 NP-TDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAELFRAKYGQVPDDVVQQLLD 258 (317)
T ss_dssp CC-SCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCSSHHHHHHH
T ss_pred Ec-hHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 65 3422 1233332 33578999999999888863 5555544
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=99.29 Aligned_cols=132 Identities=15% Similarity=0.124 Sum_probs=96.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
.++|+|| |.||+++|..|+++|++|++||++++
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~--------------------------------------------- 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ--------------------------------------------- 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC---------------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH---------------------------------------------
Confidence 4689999 99999999999999999999997641
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
++++||+||.|+|.. . .+++++++.+.++ ++++++.
T Consensus 54 -----------------------------------------~~~~aD~vi~av~~~-~-~~~v~~~l~~~~~-~~~vi~~ 89 (209)
T 2raf_A 54 -----------------------------------------ATTLGEIVIMAVPYP-A-LAALAKQYATQLK-GKIVVDI 89 (209)
T ss_dssp -----------------------------------------CSSCCSEEEECSCHH-H-HHHHHHHTHHHHT-TSEEEEC
T ss_pred -----------------------------------------HhccCCEEEEcCCcH-H-HHHHHHHHHHhcC-CCEEEEE
Confidence 357899999999943 3 4578888888787 8888877
Q ss_pred CCCCC---------------HHHHHhhcCCCCceee-eeecCCCC------CC--CeEEEecCCCCCHHHHHHHHHHHHH
Q psy13746 171 TSSFL---------------PSVLSEHSTHRSQFIV-AHPVNPPY------FI--PLVEIVPAAWTSERVITRTREIMTE 226 (294)
Q Consensus 171 tSt~~---------------~~~ia~~l~~~~~~ig-~h~~~p~~------~~--~lveiv~g~~t~~e~~~~~~~ll~~ 226 (294)
+++++ .+.+++.++ ..+++. .|++..|. .+ +...++.+ .+++..+.++++++.
T Consensus 90 ~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~ 166 (209)
T 2raf_A 90 TNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALAD 166 (209)
T ss_dssp CCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHHHHHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTT
T ss_pred CCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHhhccccccCCCCCceeEEcC--CCHHHHHHHHHHHHH
Confidence 77554 345555554 356776 55543211 12 23334444 467899999999999
Q ss_pred cCCeeEEEcc
Q psy13746 227 IGMKPVTLTT 236 (294)
Q Consensus 227 lG~~~v~v~~ 236 (294)
+|.+++++++
T Consensus 167 ~G~~~~~~~~ 176 (209)
T 2raf_A 167 SPLEVKDAGK 176 (209)
T ss_dssp SSCEEEEEES
T ss_pred cCCceEeCCC
Confidence 9999998853
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.7e-11 Score=107.11 Aligned_cols=120 Identities=14% Similarity=0.195 Sum_probs=84.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||.++|..++..|+ +|++||+++++++.....+.+
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~---------------------------------- 60 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNH---------------------------------- 60 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHH----------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHh----------------------------------
Confidence 589999 9999999999999999 999999999888753322221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--Cc------------chHHHHHHHHH
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--PE------------ILQIKHQVYRA 156 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--pe------------~~~~k~~~~~~ 156 (294)
....+ ....+++.++|+ +++++||+||+++ |. +..++++++++
T Consensus 61 ---------~~~~~-------------~~~~~i~~t~d~-~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~ 117 (328)
T 2hjr_A 61 ---------CMALI-------------GSPAKIFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAEN 117 (328)
T ss_dssp ---------HHHHH-------------TCCCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHH
T ss_pred ---------Hhhcc-------------CCCCEEEECCCH-HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHH
Confidence 01000 012357777888 5899999999998 54 45678999999
Q ss_pred HhcccCCCeEE--EecCCCCCHHHHHhhcC--CCCceeee
Q psy13746 157 IDIFMSSNTIL--SSSTSSFLPSVLSEHST--HRSQFIVA 192 (294)
Q Consensus 157 l~~~~~~~~ii--~s~tSt~~~~~ia~~l~--~~~~~ig~ 192 (294)
+.+++ +++++ +||.+... +.+..... +|.|++|+
T Consensus 118 i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~ 155 (328)
T 2hjr_A 118 VGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGM 155 (328)
T ss_dssp HHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred HHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence 99987 55554 45544332 33333222 56778776
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=105.81 Aligned_cols=206 Identities=14% Similarity=0.077 Sum_probs=119.8
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|..++|+|| |.||+.+|..|+++|++|++||++++.++...+... .+ +.
T Consensus 2 m~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~--------------------~~----- 52 (359)
T 1bg6_A 2 IESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGA----II--------------------AE----- 52 (359)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTS----EE--------------------EE-----
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCC----eE--------------------Ee-----
Confidence 344699999 999999999999999999999999988776543210 00 00
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCe-eeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLI-SGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i-~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+. ... ...++ ..+++++++++++|+||.|+|.... .++++++.+.++++++|
T Consensus 53 -------------------~~---~~~---~~~~~~~~~~~~~~~~~~~D~vi~~v~~~~~--~~~~~~l~~~l~~~~~v 105 (359)
T 1bg6_A 53 -------------------GP---GLA---GTAHPDLLTSDIGLAVKDADVILIVVPAIHH--ASIAANIASYISEGQLI 105 (359)
T ss_dssp -------------------SS---SCC---EEECCSEEESCHHHHHTTCSEEEECSCGGGH--HHHHHHHGGGCCTTCEE
T ss_pred -------------------cc---ccc---cccccceecCCHHHHHhcCCEEEEeCCchHH--HHHHHHHHHhCCCCCEE
Confidence 00 000 00122 3467888778999999999998764 57889999999999877
Q ss_pred EecCC-CCCHHHHHhhcC-C-CCc--ee--eeeecCCCCCCC-eEEEec----------CCCCCHHHHHHHHHHHHHcCC
Q psy13746 168 SSSTS-SFLPSVLSEHST-H-RSQ--FI--VAHPVNPPYFIP-LVEIVP----------AAWTSERVITRTREIMTEIGM 229 (294)
Q Consensus 168 ~s~tS-t~~~~~ia~~l~-~-~~~--~i--g~h~~~p~~~~~-lveiv~----------g~~t~~e~~~~~~~ll~~lG~ 229 (294)
++... +....++.+.+. . +.+ ++ +.+|+.....++ .+.++. ....+++.++.++++|..+.
T Consensus 106 v~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 184 (359)
T 1bg6_A 106 ILNPGATGGALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVLPQYV- 184 (359)
T ss_dssp EESSCCSSHHHHHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSCEEEEEESGGGHHHHHHHHTTTCTTEE-
T ss_pred EEcCCCchHHHHHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecceEEEeccccccHHHHHHHHHHhhhcE-
Confidence 65533 322223333222 1 122 43 345544211111 233221 11235556777777665432
Q ss_pred eeEEEccc--------------------ccc-------cHH---------HHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 230 KPVTLTTE--------------------IRG-------FAL---------NRIQFAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 230 ~~v~v~~~--------------------~~g-------~v~---------nri~~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
+..+ ..+ ++. ..++..++.|+..+++..|++++++.+.+.
T Consensus 185 ----~~~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~ 260 (359)
T 1bg6_A 185 ----AVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYK 260 (359)
T ss_dssp ----ECSCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-
T ss_pred ----EcCChHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH
Confidence 2111 000 110 133456789999999999998877776665
Q ss_pred cccC
Q psy13746 274 EGLG 277 (294)
Q Consensus 274 ~g~g 277 (294)
.+.+
T Consensus 261 ~~~~ 264 (359)
T 1bg6_A 261 ESYG 264 (359)
T ss_dssp ----
T ss_pred HHhC
Confidence 5443
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-10 Score=106.51 Aligned_cols=152 Identities=16% Similarity=0.088 Sum_probs=108.9
Q ss_pred cceEEE--ccccHHHHHHHHHC------CCeEEEEeCChH-HHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEee
Q psy13746 14 YPDGII--GLIGQAWAMIFASA------GYKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYD 84 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~------G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 84 (294)
++|+|| |.||.++|..|.++ |++|++.+++.+ ..+.+.+
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e-------------------------------- 102 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARA-------------------------------- 102 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHH--------------------------------
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHH--------------------------------
Confidence 789999 99999999999999 999988777643 3332221
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCC
Q psy13746 85 VLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSN 164 (294)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~ 164 (294)
.|.... . ....++.+++++||+||.++|.... .+++.++.+.++++
T Consensus 103 ----------------------~G~~v~--------d--~ta~s~aEAa~~ADVVILaVP~~~~--~eVl~eI~p~LK~G 148 (525)
T 3fr7_A 103 ----------------------AGFTEE--------S--GTLGDIWETVSGSDLVLLLISDAAQ--ADNYEKIFSHMKPN 148 (525)
T ss_dssp ----------------------TTCCTT--------T--TCEEEHHHHHHHCSEEEECSCHHHH--HHHHHHHHHHSCTT
T ss_pred ----------------------CCCEEe--------c--CCCCCHHHHHhcCCEEEECCChHHH--HHHHHHHHHhcCCC
Confidence 232110 0 0124678899999999999998654 36788999999999
Q ss_pred eEEEecCCCCCHHHHHh---hcCCCCceeeeeecCCCCC--------------CCeEEEecCCCCCHHHHHHHHHHHHHc
Q psy13746 165 TILSSSTSSFLPSVLSE---HSTHRSQFIVAHPVNPPYF--------------IPLVEIVPAAWTSERVITRTREIMTEI 227 (294)
Q Consensus 165 ~ii~s~tSt~~~~~ia~---~l~~~~~~ig~h~~~p~~~--------------~~lveiv~g~~t~~e~~~~~~~ll~~l 227 (294)
++| +..+++.+..+.+ .++...+++..||..|... +-..-+......+.+..+.+..++..+
T Consensus 149 aIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~ai 227 (525)
T 3fr7_A 149 SIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVAL 227 (525)
T ss_dssp CEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHT
T ss_pred CeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHC
Confidence 997 5677887777664 2333457899999888642 222234444445667899999999999
Q ss_pred CCeeE
Q psy13746 228 GMKPV 232 (294)
Q Consensus 228 G~~~v 232 (294)
|...+
T Consensus 228 G~~~v 232 (525)
T 3fr7_A 228 GSPFT 232 (525)
T ss_dssp TCSEE
T ss_pred CCCee
Confidence 98743
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-09 Score=98.02 Aligned_cols=193 Identities=11% Similarity=0.070 Sum_probs=119.0
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|+.+||+|| |.||..+|..|+++|++|++||++ +.++...+. |..+..
T Consensus 1 M~~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~-----------------------g~~~~~------ 50 (335)
T 3ghy_A 1 MSLTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTA-----------------------GLRLTE------ 50 (335)
T ss_dssp -CCCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHT-----------------------CEEEEE------
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHC-----------------------CCEEec------
Confidence 445799999 999999999999999999999996 454433221 110000
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
. ......++..++++++ +.++|+||.|+|... ..++++++.+.++++++|+
T Consensus 51 ----------------------~----~~~~~~~~~~~~~~~~-~~~~D~Vilavk~~~--~~~~~~~l~~~l~~~~~iv 101 (335)
T 3ghy_A 51 ----------------------D----GATHTLPVRATHDAAA-LGEQDVVIVAVKAPA--LESVAAGIAPLIGPGTCVV 101 (335)
T ss_dssp ----------------------T----TEEEEECCEEESCHHH-HCCCSEEEECCCHHH--HHHHHGGGSSSCCTTCEEE
T ss_pred ----------------------C----CCeEEEeeeEECCHHH-cCCCCEEEEeCCchh--HHHHHHHHHhhCCCCCEEE
Confidence 0 0001122455677875 699999999999853 4578889999999999888
Q ss_pred ecCCCCC-------------------HH-HHHhhcCCCCceeeeeec------CCCC---CCC-eEEEecCCCCCHHHHH
Q psy13746 169 SSTSSFL-------------------PS-VLSEHSTHRSQFIVAHPV------NPPY---FIP-LVEIVPAAWTSERVIT 218 (294)
Q Consensus 169 s~tSt~~-------------------~~-~ia~~l~~~~~~ig~h~~------~p~~---~~~-lveiv~g~~t~~e~~~ 218 (294)
+...++. .. .+.+.++ ..++++.-.+ .|-. .+. .+.+-.-+..+.+..+
T Consensus 102 ~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~~v~~gv~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~ 180 (335)
T 3ghy_A 102 VAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP-TRHVLGCVVHLTCATVSPGHIRHGNGRRLILGEPAGGASPRLA 180 (335)
T ss_dssp ECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC-GGGEEEEEECCCEEESSTTEEEECSCCEEEEECTTCSCCHHHH
T ss_pred EECCCCccccccccccccccccccCCcHHHHHHhcC-cccEEEEEEEEEEEEcCCcEEEECCCCeEEEecCCCCcCHHHH
Confidence 7777742 11 3445443 2344433221 1211 111 1222211223456778
Q ss_pred HHHHHHHHcCCeeEEEcccccc-----cH----HH--------------------HHHHHHHHHHHHHHHcCCCC
Q psy13746 219 RTREIMTEIGMKPVTLTTEIRG-----FA----LN--------------------RIQFAVLNECYHLVHDGVLS 264 (294)
Q Consensus 219 ~~~~ll~~lG~~~v~v~~~~~g-----~v----~n--------------------ri~~a~~~Ea~~l~~~~~~~ 264 (294)
.+.++|+.-|.++.+. .|..+ ++ .| .++..++.|+.++++..|++
T Consensus 181 ~l~~~l~~~g~~~~~~-~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~~~l~~~~~~E~~~va~a~G~~ 254 (335)
T 3ghy_A 181 SIAALFGRAGLQAECS-EAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVSAFCLAVMAEAKAIGARIGCP 254 (335)
T ss_dssp HHHHHHHHTTCEEEEC-SCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhCCCCcEeC-chHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999999887665 45433 12 12 12234688999999988875
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-10 Score=103.44 Aligned_cols=121 Identities=14% Similarity=0.155 Sum_probs=83.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||.++|..|+..|+ +|++||+++++++.....+.+
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~---------------------------------- 55 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSH---------------------------------- 55 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHH----------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHh----------------------------------
Confidence 589999 9999999999999998 999999999887763322221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--Ccch-----------------HHHH
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--PEIL-----------------QIKH 151 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--pe~~-----------------~~k~ 151 (294)
.+.. .+ ...+++.++|+++++++||+||+++ |++. .+++
T Consensus 56 ---------~~~~---~~----------~~~~i~~t~d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~ 113 (331)
T 1pzg_A 56 ---------VTSV---VD----------TNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIR 113 (331)
T ss_dssp ---------HHHH---TT----------CCCCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHH
T ss_pred ---------hhhc---cC----------CCCEEEEeCCHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHH
Confidence 1110 00 1235777899987899999999998 6532 3478
Q ss_pred HHHHHHhcccCCCeEE--EecCCCCCHHHHHhhcC--CCCceeee
Q psy13746 152 QVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHST--HRSQFIVA 192 (294)
Q Consensus 152 ~~~~~l~~~~~~~~ii--~s~tSt~~~~~ia~~l~--~~~~~ig~ 192 (294)
++++++.+++ |++++ +||.+++. +.+..... .|.|++|+
T Consensus 114 ~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~rviG~ 156 (331)
T 1pzg_A 114 EIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNMICGM 156 (331)
T ss_dssp HHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEEC
T ss_pred HHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhcEEec
Confidence 8999999987 56655 34444332 23332222 45677775
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-11 Score=103.69 Aligned_cols=150 Identities=12% Similarity=0.124 Sum_probs=98.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|++.|++|++|||+++ .+...+
T Consensus 20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~--------------------------------------- 59 (201)
T 2yjz_A 20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLP--------------------------------------- 59 (201)
Confidence 579999 99999999999999999999999876 222110
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.| +... ++.++++++|+||.|+|... + ..++ ++.. ..++++|++.+
T Consensus 60 ---------------~g--------------~~~~-~~~~~~~~aDvVilav~~~~-~-~~v~-~l~~-~~~~~ivI~~~ 105 (201)
T 2yjz_A 60 ---------------RG--------------AEVL-CYSEAASRSDVIVLAVHREH-Y-DFLA-ELAD-SLKGRVLIDVS 105 (201)
Confidence 01 1223 55567889999999999753 3 3444 4543 34677877766
Q ss_pred CCCCH--------HHHHhhcCCCCceeeeeecCCCCCCC--e-----EEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcc
Q psy13746 172 SSFLP--------SVLSEHSTHRSQFIVAHPVNPPYFIP--L-----VEIVPAAWTSERVITRTREIMTEIGMKPVTLTT 236 (294)
Q Consensus 172 St~~~--------~~ia~~l~~~~~~ig~h~~~p~~~~~--l-----veiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~ 236 (294)
.+++. +.+++.++. .+.+...+..|..... . ..++.| .+++.++.++++|+.+|.+++++++
T Consensus 106 ~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~G~ 182 (201)
T 2yjz_A 106 NNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLDASRQVFVCG--NDSKAKDRVMDIARTLGLTPLDQGS 182 (201)
Confidence 66642 344444332 3455555555543221 1 134445 3678899999999999999999864
Q ss_pred cccc
Q psy13746 237 EIRG 240 (294)
Q Consensus 237 ~~~g 240 (294)
-..+
T Consensus 183 l~~a 186 (201)
T 2yjz_A 183 LVAA 186 (201)
Confidence 3333
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.3e-10 Score=101.16 Aligned_cols=121 Identities=15% Similarity=0.145 Sum_probs=82.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.+||+|| |.||.++|..++..|+ +|.++|+++++++.....+.+
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~--------------------------------- 50 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSH--------------------------------- 50 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHT---------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh---------------------------------
Confidence 4689999 9999999999999998 999999999887643332221
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--Ccc-----------------hHHH
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--PEI-----------------LQIK 150 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--pe~-----------------~~~k 150 (294)
.+..+ + ...+++.++|+ +++++||+||+++ |++ ..++
T Consensus 51 ----------~~~~~---~----------~~~~i~~t~d~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~ 106 (322)
T 1t2d_A 51 ----------TNVMA---Y----------SNCKVSGSNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIM 106 (322)
T ss_dssp ----------HHHHH---T----------CCCCEEEECCG-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHH
T ss_pred ----------hhhhc---C----------CCcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHH
Confidence 01000 0 11347777888 6899999999998 542 2468
Q ss_pred HHHHHHHhcccCCCeEE--EecCCCCCHHHHHhhcC--CCCceeee
Q psy13746 151 HQVYRAIDIFMSSNTIL--SSSTSSFLPSVLSEHST--HRSQFIVA 192 (294)
Q Consensus 151 ~~~~~~l~~~~~~~~ii--~s~tSt~~~~~ia~~l~--~~~~~ig~ 192 (294)
+++++++.+++ +++++ +||.+.+. +.+..... .|.|++|+
T Consensus 107 ~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rviG~ 150 (322)
T 1t2d_A 107 IEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKIIGL 150 (322)
T ss_dssp HHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEEEC
T ss_pred HHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEEec
Confidence 88999999987 56654 45544332 33333223 46677775
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.4e-09 Score=93.08 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=120.9
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
.+||+|| |.||..+|..|+++|++|++| ++++.++...+.-. .+.
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~-----------------------~~~--------- 65 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGL-----------------------RLE--------- 65 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCE-----------------------EEE---------
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCe-----------------------EEE---------
Confidence 4689999 999999999999999999999 99888776543210 000
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+ .......++..+++.+ .+.++|+||.|+|... .+++++++.+.++++++|++.
T Consensus 66 -----------------~------~~~~~~~~~~~~~~~~-~~~~~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~~ 119 (318)
T 3hwr_A 66 -----------------T------QSFDEQVKVSASSDPS-AVQGADLVLFCVKSTD--TQSAALAMKPALAKSALVLSL 119 (318)
T ss_dssp -----------------C------SSCEEEECCEEESCGG-GGTTCSEEEECCCGGG--HHHHHHHHTTTSCTTCEEEEE
T ss_pred -----------------c------CCCcEEEeeeeeCCHH-HcCCCCEEEEEccccc--HHHHHHHHHHhcCCCCEEEEe
Confidence 0 0001112345567776 4689999999999873 468889999999999999888
Q ss_pred CCCCCH-HHHHhhcCCCCceeeeee------cCCCC---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc
Q psy13746 171 TSSFLP-SVLSEHSTHRSQFIVAHP------VNPPY---FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 240 (294)
Q Consensus 171 tSt~~~-~~ia~~l~~~~~~ig~h~------~~p~~---~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g 240 (294)
+.++.. +.+.+.++ .+.++... ..|-. .+... +.-|. .+..+.+.++|..-|.++.+. .|..+
T Consensus 120 ~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g~-~~ig~---~~~~~~l~~~l~~~~~~~~~~-~Di~~ 192 (318)
T 3hwr_A 120 QNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRGE-LVIEP---TSHGANLAAIFAAAGVPVETS-DNVRG 192 (318)
T ss_dssp CSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEEE-EEECC---CTTTHHHHHHHHHTTCCEEEC-SCHHH
T ss_pred CCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCce-EEEcC---CHHHHHHHHHHHhCCCCcEec-hHHHH
Confidence 888887 45666654 44444221 11211 11111 22232 234567888899999887665 45443
Q ss_pred -----cHHHH------------------------HHHHHHHHHHHHHHcCCCC
Q psy13746 241 -----FALNR------------------------IQFAVLNECYHLVHDGVLS 264 (294)
Q Consensus 241 -----~v~nr------------------------i~~a~~~Ea~~l~~~~~~~ 264 (294)
++.|- ++..++.|+..+++..|++
T Consensus 193 ~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~ 245 (318)
T 3hwr_A 193 ALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVK 245 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCC
Confidence 22222 2234578888888887765
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=97.36 Aligned_cols=112 Identities=12% Similarity=0.145 Sum_probs=78.3
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
++||+|| |.||.++|..++..|+ +|.++|++++....+.+..
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~---------------------------------- 59 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLE---------------------------------- 59 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHH----------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHh----------------------------------
Confidence 3689999 9999999999999999 9999999986322322210
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC-------------CcchHHHHHHHH
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV-------------PEILQIKHQVYR 155 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav-------------pe~~~~k~~~~~ 155 (294)
+.. ..+++.++|+ +++++||+||+++ .++..+++++++
T Consensus 60 -----------------~~~-----------~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~ 110 (303)
T 2i6t_A 60 -----------------IFN-----------LPNVEISKDL-SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVP 110 (303)
T ss_dssp -----------------HHT-----------CTTEEEESCG-GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHH
T ss_pred -----------------hhc-----------CCCeEEeCCH-HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 000 0146677888 5799999999997 888999999999
Q ss_pred HHhcccCCCeEE--EecCCCCCHHHHHhhc----C-CCCceeee
Q psy13746 156 AIDIFMSSNTIL--SSSTSSFLPSVLSEHS----T-HRSQFIVA 192 (294)
Q Consensus 156 ~l~~~~~~~~ii--~s~tSt~~~~~ia~~l----~-~~~~~ig~ 192 (294)
++.+++ +++++ +||. .+.+...+ . .|.|++|+
T Consensus 111 ~i~~~~-p~a~iiv~sNP----~~~~t~~~~~~~~~p~~rviG~ 149 (303)
T 2i6t_A 111 ALGHYS-QHSVLLVASQP----VEIMTYVTWKLSTFPANRVIGI 149 (303)
T ss_dssp HHHHHT-TTCEEEECSSS----HHHHHHHHHHHHCCCGGGEEEC
T ss_pred HHHHhC-CCeEEEEcCCh----HHHHHHHHHHhcCCCHHHeeCC
Confidence 999998 56654 4553 33333322 2 25678886
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.9e-08 Score=86.64 Aligned_cols=199 Identities=12% Similarity=0.102 Sum_probs=121.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||+.+|..|+++|++|++|+|++ .+...+. |..+.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~-----------------------g~~~~---------- 47 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGN-----------------------GLKVF---------- 47 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHT-----------------------CEEEE----------
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhC-----------------------CCEEE----------
Confidence 589999 9999999999999999999999986 2332211 00000
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
+ ..+. ..+..+..+++.++ +.++|+||.|+|... -.++++++.+.++++++|++..
T Consensus 48 ----------------~-~~g~----~~~~~~~~~~~~~~-~~~~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~l~ 103 (312)
T 3hn2_A 48 ----------------S-INGD----FTLPHVKGYRAPEE-IGPMDLVLVGLKTFA--NSRYEELIRPLVEEGTQILTLQ 103 (312)
T ss_dssp ----------------E-TTCC----EEESCCCEESCHHH-HCCCSEEEECCCGGG--GGGHHHHHGGGCCTTCEEEECC
T ss_pred ----------------c-CCCe----EEEeeceeecCHHH-cCCCCEEEEecCCCC--cHHHHHHHHhhcCCCCEEEEec
Confidence 0 0000 00112344567764 789999999999865 3478899999999999888888
Q ss_pred CCCCH-HHHHhhcCCCCceeeeeec------CCC---CCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc
Q psy13746 172 SSFLP-SVLSEHSTHRSQFIVAHPV------NPP---YFIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 240 (294)
Q Consensus 172 St~~~-~~ia~~l~~~~~~ig~h~~------~p~---~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g 240 (294)
-++.. +.+++.++. .++++...+ .|- ..+. .+.+-..+..+.+..+.+.++|+.-|.+..+. .|.-+
T Consensus 104 nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~-~di~~ 181 (312)
T 3hn2_A 104 NGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPRDTGRIEELAAMFRQAGVDCRTT-DDLKR 181 (312)
T ss_dssp SSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCCCSHHHHHHHHHHHHTTCCEEEC-SCHHH
T ss_pred CCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCCccHHHHHHHHHHHhCCCCcEEC-hHHHH
Confidence 88864 456666542 244443211 121 1111 22222222234567788999999999887654 45422
Q ss_pred -----cHHHHH------------------------HHHHHHHHHHHHHcCC--CC--HHHHHHHHH
Q psy13746 241 -----FALNRI------------------------QFAVLNECYHLVHDGV--LS--AKDIDRVMS 273 (294)
Q Consensus 241 -----~v~nri------------------------~~a~~~Ea~~l~~~~~--~~--~~~id~a~~ 273 (294)
++.|-. +..++.|+.++++..| ++ .+.++..+.
T Consensus 182 ~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~ 247 (312)
T 3hn2_A 182 ARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLATFIADGYVDDMLE 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCCSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHHH
Confidence 222221 2235788888888887 54 233444444
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.83 E-value=2.5e-09 Score=98.14 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=82.8
Q ss_pred ccceEEE--ccccHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
-++|+|| |.||+++|..+. ..|++|++||++++..+.+.+
T Consensus 163 g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~------------------------------------- 205 (348)
T 2w2k_A 163 GHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA------------------------------------- 205 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-------------------------------------
T ss_pred CCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhh-------------------------------------
Confidence 3689999 999999999999 899999999999866543211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| +...+++++++++||+|+.++|.+.+.+.-+.+++.+.++++++|+.
T Consensus 206 -----------------~g--------------~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin 254 (348)
T 2w2k_A 206 -----------------LG--------------AERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVN 254 (348)
T ss_dssp -----------------HT--------------CEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEE
T ss_pred -----------------cC--------------cEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEE
Confidence 01 23345787788999999999998765544333455567899999874
Q ss_pred cCCC--CCHHHHHhhcCC-CCceeeeeecCC
Q psy13746 170 STSS--FLPSVLSEHSTH-RSQFIVAHPVNP 197 (294)
Q Consensus 170 ~tSt--~~~~~ia~~l~~-~~~~ig~h~~~p 197 (294)
.+++ +..+.+.+.+.. .....|.+++.+
T Consensus 255 ~srg~~vd~~aL~~aL~~~~i~gaglDv~~~ 285 (348)
T 2w2k_A 255 TARGPVISQDALIAALKSGKLLSAGLDVHEF 285 (348)
T ss_dssp CSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred CCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence 4444 344567666653 223356777763
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.5e-08 Score=87.51 Aligned_cols=192 Identities=12% Similarity=0.060 Sum_probs=118.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||+.+|..|+++|++|++|+|++ .+...+. |+.+.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~-----------------------Gl~~~---------- 47 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAK-----------------------GIRIR---------- 47 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHH-----------------------CEEEE----------
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhC-----------------------CcEEe----------
Confidence 589999 9999999999999999999999986 2332221 00000
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
+...+. ..+..+..+++++++.+++|+||.|+|.... .++++++.+.++++++|++..
T Consensus 48 ----------------~~~~g~----~~~~~~~~~~~~~~~~~~~DlVilavK~~~~--~~~l~~l~~~l~~~t~Iv~~~ 105 (320)
T 3i83_A 48 ----------------SATLGD----YTFRPAAVVRSAAELETKPDCTLLCIKVVEG--ADRVGLLRDAVAPDTGIVLIS 105 (320)
T ss_dssp ----------------ETTTCC----EEECCSCEESCGGGCSSCCSEEEECCCCCTT--CCHHHHHTTSCCTTCEEEEEC
T ss_pred ----------------ecCCCc----EEEeeeeeECCHHHcCCCCCEEEEecCCCCh--HHHHHHHHhhcCCCCEEEEeC
Confidence 000000 0011234557777655599999999998752 368889999999998888777
Q ss_pred CCCC-HHHHHhhcCCCCceeeeeecC------CCC---CCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc
Q psy13746 172 SSFL-PSVLSEHSTHRSQFIVAHPVN------PPY---FIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 240 (294)
Q Consensus 172 St~~-~~~ia~~l~~~~~~ig~h~~~------p~~---~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g 240 (294)
.++. .+.+++.++. .+++++-.+. |-. .+. .+.+-.-+..+.+..+.+.++|+.-|.++.+. .|.-+
T Consensus 106 nGi~~~~~l~~~~~~-~~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~-~di~~ 183 (320)
T 3i83_A 106 NGIDIEPEVAAAFPD-NEVISGLAFIGVTRTAPGEIWHQAYGRLMLGNYPGGVSERVKTLAAAFEEAGIDGIAT-ENITT 183 (320)
T ss_dssp SSSSCSHHHHHHSTT-SCEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHHHTTSCEEEC-SCHHH
T ss_pred CCCChHHHHHHHCCC-CcEEEEEEEeceEEcCCCEEEECCCCEEEEecCCCCccHHHHHHHHHHHhCCCCceEC-HHHHH
Confidence 7775 3566666653 2444432221 211 111 12221112234567888999999999887665 45432
Q ss_pred -----cHHHH-----------------------HHHHHHHHHHHHHHcCCCC
Q psy13746 241 -----FALNR-----------------------IQFAVLNECYHLVHDGVLS 264 (294)
Q Consensus 241 -----~v~nr-----------------------i~~a~~~Ea~~l~~~~~~~ 264 (294)
++.|- ++..++.|+.++++..|++
T Consensus 184 ~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~va~a~G~~ 235 (320)
T 3i83_A 184 ARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAVAAANGHP 235 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 23331 1223577888888877765
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=90.74 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=74.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
+||+|| |.||.++|..++..|+ +|+++|+++++++.....+.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~---------------------------------- 46 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIA---------------------------------- 46 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHT----------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhh----------------------------------
Confidence 489999 9999999999999999 99999999876653211111
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCC--c------------chHHHHHHHH
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP--E------------ILQIKHQVYR 155 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavp--e------------~~~~k~~~~~ 155 (294)
.+. +.....+++. ++++ ++++||+||++++ . +..+++++++
T Consensus 47 -----------------~~~------~~~~~~~i~~-~~~~-a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~ 101 (304)
T 2v6b_A 47 -----------------HAA------PVSHGTRVWH-GGHS-ELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVP 101 (304)
T ss_dssp -----------------TSC------CTTSCCEEEE-ECGG-GGTTCSEEEECC------------CHHHHHHHHHHHHH
T ss_pred -----------------hhh------hhcCCeEEEE-CCHH-HhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHH
Confidence 000 0000112333 4564 7999999999993 2 4456788889
Q ss_pred HHhcccCCCeEEE--ecCCCCCHHHHHhhcCCCCceeee
Q psy13746 156 AIDIFMSSNTILS--SSTSSFLPSVLSEHSTHRSQFIVA 192 (294)
Q Consensus 156 ~l~~~~~~~~ii~--s~tSt~~~~~ia~~l~~~~~~ig~ 192 (294)
++.++. ++++++ +|.+......+.+.. .|.|++|+
T Consensus 102 ~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~ 138 (304)
T 2v6b_A 102 QITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS 138 (304)
T ss_dssp HHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred HHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence 999885 666543 443332222233333 56677765
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=9.5e-09 Score=99.40 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=106.0
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+++|..+...|++|++||+++.. +.+.+
T Consensus 141 ~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~------------------------------------- 182 (529)
T 1ygy_A 141 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQ------------------------------------- 182 (529)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHH-------------------------------------
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHh-------------------------------------
Confidence 34789999 999999999999999999999998742 22211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH-HHHhcccCCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~ 168 (294)
.| +... ++++++++||+|+.|+|...+.+ .++ +++.+.++++++|+
T Consensus 183 -----------------~g--------------~~~~-~l~e~~~~aDvV~l~~P~~~~t~-~~i~~~~~~~~k~g~ili 229 (529)
T 1ygy_A 183 -----------------LG--------------IELL-SLDDLLARADFISVHLPKTPETA-GLIDKEALAKTKPGVIIV 229 (529)
T ss_dssp -----------------HT--------------CEEC-CHHHHHHHCSEEEECCCCSTTTT-TCBCHHHHTTSCTTEEEE
T ss_pred -----------------cC--------------cEEc-CHHHHHhcCCEEEECCCCchHHH-HHhCHHHHhCCCCCCEEE
Confidence 12 1223 67788999999999999874433 333 33666789999998
Q ss_pred ecCCCCCHH--HHHhhcCCC------CceeeeeecC--CCCCCCeEEEecCCC-CCHHHHHH-----HHHHHHHcCCee-
Q psy13746 169 SSTSSFLPS--VLSEHSTHR------SQFIVAHPVN--PPYFIPLVEIVPAAW-TSERVITR-----TREIMTEIGMKP- 231 (294)
Q Consensus 169 s~tSt~~~~--~ia~~l~~~------~~~ig~h~~~--p~~~~~lveiv~g~~-t~~e~~~~-----~~~ll~~lG~~~- 231 (294)
+.+.+-.++ .+.+.+... ..+++.||+. |.+..+.+.++|+.. ++++..+. ++.+.+.++..+
T Consensus 230 n~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~ 309 (529)
T 1ygy_A 230 NAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFV 309 (529)
T ss_dssp ECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 655543333 454555321 2355666653 223456777888876 67777665 667777777654
Q ss_pred ---EEEc-ccccccHH
Q psy13746 232 ---VTLT-TEIRGFAL 243 (294)
Q Consensus 232 ---v~v~-~~~~g~v~ 243 (294)
+.+. ++.+..+.
T Consensus 310 ~~~v~~~~~~~hd~i~ 325 (529)
T 1ygy_A 310 PDAVNVGGGVVNEEVA 325 (529)
T ss_dssp TTBCSCCSTTSCTTTT
T ss_pred CcccCCcccccchhhh
Confidence 4444 34444444
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-08 Score=89.39 Aligned_cols=119 Identities=13% Similarity=0.065 Sum_probs=79.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||.++|..++..|+ +|.++|+++++++.....+.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~----------------------------------- 47 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLY----------------------------------- 47 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHH-----------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHH-----------------------------------
Confidence 589999 9999999999999997 99999999887753221111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--------------CcchHHHHHHHHH
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--------------PEILQIKHQVYRA 156 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--------------pe~~~~k~~~~~~ 156 (294)
..... .....+++.++|+ +++++||+||+++ .++..++++++++
T Consensus 48 --------~~~~~-------------~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~ 105 (309)
T 1ur5_A 48 --------EASPI-------------EGFDVRVTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQ 105 (309)
T ss_dssp --------TTHHH-------------HTCCCCEEEESCG-GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHH
T ss_pred --------HhHhh-------------cCCCeEEEECCCH-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00000 0012346777888 5799999999997 3445677888899
Q ss_pred HhcccCCCeEEEecCCCCCHHHHHhhc----C-CCCceeee
Q psy13746 157 IDIFMSSNTILSSSTSSFLPSVLSEHS----T-HRSQFIVA 192 (294)
Q Consensus 157 l~~~~~~~~ii~s~tSt~~~~~ia~~l----~-~~~~~ig~ 192 (294)
+.+++ +++++.. .|.++..+...+ . .|.|++|+
T Consensus 106 i~~~~-p~a~vi~--~tNPv~~~t~~~~~~~~~~~~rviG~ 143 (309)
T 1ur5_A 106 AAPLS-PNAVIIM--VNNPLDAMTYLAAEVSGFPKERVIGQ 143 (309)
T ss_dssp HGGGC-TTCEEEE--CCSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred HHhhC-CCeEEEE--cCCchHHHHHHHHHHcCCCHHHEEEC
Confidence 99987 6666532 234444333222 1 24567775
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.77 E-value=6.4e-09 Score=94.79 Aligned_cols=117 Identities=17% Similarity=0.061 Sum_probs=81.3
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+++|..++..|++|++||++++..+.+.+
T Consensus 154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~------------------------------------- 196 (330)
T 2gcg_A 154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE------------------------------------- 196 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHT-------------------------------------
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHh-------------------------------------
Confidence 34689999 999999999999999999999998765443210
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| +... ++.+++++||+|+.++|.+.+.+..+.+++.+.++++++++.
T Consensus 197 -----------------~g--------------~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn 244 (330)
T 2gcg_A 197 -----------------FQ--------------AEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFIN 244 (330)
T ss_dssp -----------------TT--------------CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEE
T ss_pred -----------------cC--------------ceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEE
Confidence 01 2333 777788999999999998755433232455567888998874
Q ss_pred cCCC--CCHHHHHhhcC-CCCceeeeeecCC
Q psy13746 170 STSS--FLPSVLSEHST-HRSQFIVAHPVNP 197 (294)
Q Consensus 170 ~tSt--~~~~~ia~~l~-~~~~~ig~h~~~p 197 (294)
.+++ +..+.+.+.+. ......+.+++.|
T Consensus 245 ~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ 275 (330)
T 2gcg_A 245 ISRGDVVNQDDLYQALASGKIAAAGLDVTSP 275 (330)
T ss_dssp CSCGGGBCHHHHHHHHHHTSSSEEEESCCSS
T ss_pred CCCCcccCHHHHHHHHHcCCccEEEeCCCCC
Confidence 4433 34456666654 2334467777764
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=94.22 Aligned_cols=111 Identities=15% Similarity=0.106 Sum_probs=76.8
Q ss_pred cceEEE--ccccHHHHHHHHH-CCCeEEEEe---CChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII--GLIGQAWAMIFAS-AGYKVSLYD---VLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~-~G~~V~~~d---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
+||+|| |.||..+|..|++ +|++|++|| ++++.++.+.+.. |..+....
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~----------------------g~~~~~~~--- 57 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGAD----------------------ELTVIVNE--- 57 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTS----------------------CEEEEEEC---
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhc----------------------cceeeeec---
Confidence 589999 9999999999988 599999999 7777665432110 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCee-eccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLIS-GTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~-~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
.+ + .......++. .+++++++++++|+||+|+|... .+++++++.++++++++
T Consensus 58 -------------------~~---~--~~~~~~~~~~~~~~~~~~a~~~aD~Vilav~~~~--~~~v~~~l~~~l~~~~i 111 (404)
T 3c7a_A 58 -------------------KD---G--TQTEVKSRPKVITKDPEIAISGADVVILTVPAFA--HEGYFQAMAPYVQDSAL 111 (404)
T ss_dssp -------------------SS---S--CEEEEEECCSEEESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTCCTTCE
T ss_pred -------------------CC---C--ccceeeccceEEeCCHHHHhCCCCEEEEeCchHH--HHHHHHHHHhhCCCCcE
Confidence 00 0 0000112233 56788888899999999999876 57899999999999999
Q ss_pred EEecCCCCC
Q psy13746 167 LSSSTSSFL 175 (294)
Q Consensus 167 i~s~tSt~~ 175 (294)
|++++++..
T Consensus 112 vv~~~~~~G 120 (404)
T 3c7a_A 112 IVGLPSQAG 120 (404)
T ss_dssp EEETTCCTT
T ss_pred EEEcCCCcc
Confidence 988655554
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5.2e-09 Score=95.52 Aligned_cols=115 Identities=18% Similarity=0.092 Sum_probs=80.1
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+++|..++..|++|++||++++. +.+.+
T Consensus 149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~------------------------------------- 190 (334)
T 2dbq_A 149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERE------------------------------------- 190 (334)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHH-------------------------------------
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhh-------------------------------------
Confidence 34689999 999999999999999999999999876 32211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| +.. .++.+++++||+|+.|+|.+.+.+.-+.+++.+.++++++|++
T Consensus 191 -----------------~g--------------~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn 238 (334)
T 2dbq_A 191 -----------------LN--------------AEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILIN 238 (334)
T ss_dssp -----------------HC--------------CEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEE
T ss_pred -----------------cC--------------ccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEE
Confidence 12 122 4777788999999999999875443232455667889998874
Q ss_pred cCCCC--CHHHHHhhcC-CCCceeeeeecC
Q psy13746 170 STSSF--LPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 170 ~tSt~--~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
.+.+. ....+.+.+. .+....+.+++.
T Consensus 239 ~srg~~v~~~aL~~aL~~~~i~ga~lDv~~ 268 (334)
T 2dbq_A 239 IARGKVVDTNALVKALKEGWIAGAGLDVFE 268 (334)
T ss_dssp CSCGGGBCHHHHHHHHHHTSSSEEEESCCS
T ss_pred CCCCcccCHHHHHHHHHhCCeeEEEecCCC
Confidence 44332 2225655554 333446678776
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.9e-09 Score=97.72 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHcccCCCcCCCChhhhhc
Q psy13746 212 TSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVLS-AKDIDRVMSEGLGLRYAFLGPLETIH 290 (294)
Q Consensus 212 t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~~~Ea~~l~~~~~~~-~~~id~a~~~g~g~~~~~~Gp~~~~D 290 (294)
+++++.+.+.++...+|+.+..+ .+|++.||++.++++||++++++|.++ ++|||.++..|+|||....|||+++|
T Consensus 332 ~~~~~~~~~~~~~~~~g~~~~~~---~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~D 408 (463)
T 1zcj_A 332 PDPWLSTFLSQYREVHHIEQRTI---SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAA 408 (463)
T ss_dssp ECHHHHHHHHHHHHHTTCCCCCC---CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCcccC---CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHHH
Confidence 68999999888888888665444 479999999999999999999999994 99999999999999955569999999
Q ss_pred ccC
Q psy13746 291 LNS 293 (294)
Q Consensus 291 ~~~ 293 (294)
.+|
T Consensus 409 ~~G 411 (463)
T 1zcj_A 409 SVG 411 (463)
T ss_dssp HHC
T ss_pred HhC
Confidence 987
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-08 Score=94.95 Aligned_cols=108 Identities=16% Similarity=0.143 Sum_probs=82.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--------eEEEEeCChHHHH-HHHHHHHhhh--hhhhhcccccCCCCCccCCcee
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--------KVSLYDVLSEQIE-NAKNTIQHTL--QDYHQKGCLKGSLSPAHAGYKV 80 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--------~V~~~d~~~~~~~-~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~v 80 (294)
.||+|| |.||+++|..++++|+ +|++|.|+++... ...+.|++.+ +.|++.
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpg---------------- 98 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPG---------------- 98 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTT----------------
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCC----------------
Confidence 489999 9999999999999875 5999999876422 2233444322 233222
Q ss_pred EEeecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcc
Q psy13746 81 SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF 160 (294)
Q Consensus 81 ~~~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~ 160 (294)
.....+++.++|+.++++++|+||.++|... -+.+++++.++
T Consensus 99 ------------------------------------v~Lp~~i~~t~dl~~al~~ad~ii~avPs~~--~r~~l~~l~~~ 140 (391)
T 4fgw_A 99 ------------------------------------ITLPDNLVANPDLIDSVKDVDIIVFNIPHQF--LPRICSQLKGH 140 (391)
T ss_dssp ------------------------------------CCCCSSEEEESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTT
T ss_pred ------------------------------------CcCCCCcEEeCCHHHHHhcCCEEEEECChhh--hHHHHHHhccc
Confidence 1233568899999999999999999999765 67899999999
Q ss_pred cCCCeEEEecCCCCC
Q psy13746 161 MSSNTILSSSTSSFL 175 (294)
Q Consensus 161 ~~~~~ii~s~tSt~~ 175 (294)
++++.++++.+-++.
T Consensus 141 ~~~~~~iv~~~KGie 155 (391)
T 4fgw_A 141 VDSHVRAISCLKGFE 155 (391)
T ss_dssp SCTTCEEEECCCSCE
T ss_pred cCCCceeEEeccccc
Confidence 999998887776653
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=85.74 Aligned_cols=137 Identities=13% Similarity=0.127 Sum_probs=85.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
+||+|| |.||.++|..++..|+ +|+++|+++++++.....+.+.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~-------------------------------- 48 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHG-------------------------------- 48 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH--------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhh--------------------------------
Confidence 479999 9999999999999999 9999999998876543222110
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch--------------HHHHHHHH
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL--------------QIKHQVYR 155 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~--------------~~k~~~~~ 155 (294)
+ ... ...+++. ++.+ ++++||+||+|++... .+++++++
T Consensus 49 -----------~----~~~----------~~~~i~~-~d~~-~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~ 101 (319)
T 1a5z_A 49 -----------T----PFT----------RRANIYA-GDYA-DLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIAR 101 (319)
T ss_dssp -----------G----GGS----------CCCEEEE-CCGG-GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred -----------h----hhc----------CCcEEEe-CCHH-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 000 0012343 3554 6899999999998632 35678888
Q ss_pred HHhcccCCCeEEE--ecCCCCCHHHHHhhc-C-CCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy13746 156 AIDIFMSSNTILS--SSTSSFLPSVLSEHS-T-HRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGM 229 (294)
Q Consensus 156 ~l~~~~~~~~ii~--s~tSt~~~~~ia~~l-~-~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~ 229 (294)
++.+++ ++++++ +|.+.. .+.+.... . .|.|++|+ .|.-+.......+.+.+|.
T Consensus 102 ~i~~~~-~~~~ii~~tNp~~~-~~~~~~~~~~~~~~rviG~------------------~t~ld~~r~~~~la~~lgv 159 (319)
T 1a5z_A 102 NVSKYA-PDSIVIVVTNPVDV-LTYFFLKESGMDPRKVFGS------------------GTVLDTARLRTLIAQHCGF 159 (319)
T ss_dssp HHHHHC-TTCEEEECSSSHHH-HHHHHHHHHTCCTTTEEEC------------------TTHHHHHHHHHHHHHHHTC
T ss_pred HHHhhC-CCeEEEEeCCcHHH-HHHHHHHHhCCChhhEEee------------------CccHHHHHHHHHHHHHhCc
Confidence 898886 455443 333222 12232222 2 35566664 1444555555566667774
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.72 E-value=9.1e-09 Score=92.02 Aligned_cols=124 Identities=12% Similarity=0.048 Sum_probs=85.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||++++..+.
T Consensus 122 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~----------------------------------------- 160 (290)
T 3gvx_A 122 GKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV----------------------------------------- 160 (290)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------------------
T ss_pred cchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------------------
Confidence 3689999 999999999999999999999998743210
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
....+++++++++||+|+.++|...+.+.-+-++..+.++++++|+..
T Consensus 161 --------------------------------~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~ 208 (290)
T 3gvx_A 161 --------------------------------DVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNV 208 (290)
T ss_dssp --------------------------------SEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEEC
T ss_pred --------------------------------ccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEe
Confidence 123568888899999999999976554333335667778999998744
Q ss_pred CCC--CCHHHHHhhcC-CCCceeeeeec-----CCCCCCCeEEEecC
Q psy13746 171 TSS--FLPSVLSEHST-HRSQFIVAHPV-----NPPYFIPLVEIVPA 209 (294)
Q Consensus 171 tSt--~~~~~ia~~l~-~~~~~ig~h~~-----~p~~~~~lveiv~g 209 (294)
+.+ +....+.+.+. ......+...+ .|.+..+.+.++|+
T Consensus 209 aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~pL~~~~nvilTPH 255 (290)
T 3gvx_A 209 ARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRNAILSPH 255 (290)
T ss_dssp SCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSCCCSSEEECCS
T ss_pred ehhcccCCcchhhhhhhccceEEeeccccCCcccchhhhhhhhcCcc
Confidence 433 33445666554 33344444433 33344556667776
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-08 Score=90.86 Aligned_cols=112 Identities=14% Similarity=0.013 Sum_probs=79.2
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+++|..+...|++|++||++++...
T Consensus 163 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------------------------------- 201 (333)
T 3ba1_A 163 SGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------------------------------- 201 (333)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----------------------------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----------------------------------------
Confidence 34689999 99999999999999999999999874310
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
| .....++++++++||+|+.++|.+.+.+.-+-++..+.++++++|++
T Consensus 202 ------------------g--------------~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn 249 (333)
T 3ba1_A 202 ------------------N--------------YTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLIN 249 (333)
T ss_dssp ------------------C--------------SEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEE
T ss_pred ------------------C--------------ceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEE
Confidence 1 12346788889999999999998755433222445556788998875
Q ss_pred cCCCC--CHHHHHhhcC-CCCceeeeeecC
Q psy13746 170 STSSF--LPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 170 ~tSt~--~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
.+++. ....+.+.+. ...+..+.+++.
T Consensus 250 ~srG~~vd~~aL~~aL~~g~i~ga~lDv~~ 279 (333)
T 3ba1_A 250 IGRGPHVDEPELVSALVEGRLGGAGLDVFE 279 (333)
T ss_dssp CSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred CCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence 44443 3346666665 334566777776
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-08 Score=91.52 Aligned_cols=113 Identities=15% Similarity=0.061 Sum_probs=77.7
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+++|..++..|++|++||++++. +.+.+
T Consensus 145 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~------------------------------------- 186 (333)
T 2d0i_A 145 YGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKE------------------------------------- 186 (333)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHH-------------------------------------
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhh-------------------------------------
Confidence 34689999 999999999999999999999999875 32211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| +.. .++++++++||+|+.|+|.+.+.+.-+-+++.+.++++ +++
T Consensus 187 -----------------~g--------------~~~-~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ili- 232 (333)
T 2d0i_A 187 -----------------LK--------------ARY-MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLV- 232 (333)
T ss_dssp -----------------HT--------------EEE-CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEE-
T ss_pred -----------------cC--------------cee-cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEE-
Confidence 01 222 36777889999999999998554433333445567888 776
Q ss_pred cCCCC---CHHHHHhhcCC-CCceeeeeecC
Q psy13746 170 STSSF---LPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 170 ~tSt~---~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
|+|.. ....+.+.+.. .....|.+++.
T Consensus 233 n~srg~~vd~~aL~~aL~~~~i~gaglDv~~ 263 (333)
T 2d0i_A 233 NIGRGALVDEKAVTEAIKQGKLKGYATDVFE 263 (333)
T ss_dssp ECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred ECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence 45432 22245555543 34457788877
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=8.9e-08 Score=86.82 Aligned_cols=104 Identities=14% Similarity=0.111 Sum_probs=73.4
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.-++|+|| |.||+++|..+...|++|++||+ +++.. .+.+
T Consensus 145 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~------------------------------------ 187 (320)
T 1gdh_A 145 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEAS------------------------------------ 187 (320)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHH------------------------------------
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhh------------------------------------
Confidence 34689999 99999999999999999999999 87652 2111
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.| ....+++++++++||+|+.++|...+.+.-+-++..+.++++++++
T Consensus 188 ------------------~g--------------~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailI 235 (320)
T 1gdh_A 188 ------------------YQ--------------ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVV 235 (320)
T ss_dssp ------------------HT--------------CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEE
T ss_pred ------------------cC--------------cEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEE
Confidence 12 1334478888899999999999765432222244556789999988
Q ss_pred ecCCC--CCHHHHHhhcC
Q psy13746 169 SSTSS--FLPSVLSEHST 184 (294)
Q Consensus 169 s~tSt--~~~~~ia~~l~ 184 (294)
..+++ +....+.+.+.
T Consensus 236 n~arg~~vd~~aL~~aL~ 253 (320)
T 1gdh_A 236 NTARGDLVDNELVVAALE 253 (320)
T ss_dssp ECSCGGGBCHHHHHHHHH
T ss_pred ECCCCcccCHHHHHHHHH
Confidence 55554 34445666554
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=4e-07 Score=81.99 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=34.1
Q ss_pred cceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~~~~ 51 (294)
+||+|| |.||.++|..|+.+| ++|++||+++++++...
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~ 43 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQ 43 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence 589999 999999999999999 79999999998876543
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-07 Score=83.13 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=34.8
Q ss_pred CCCCCccceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHH
Q psy13746 8 PAQGGFYPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIE 48 (294)
Q Consensus 8 ~~~~~~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~ 48 (294)
|..|+.+||+|| |.||.++|..++..|+ +|.+||+++++++
T Consensus 2 ~~~m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~ 45 (324)
T 3gvi_A 2 PGSMARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQ 45 (324)
T ss_dssp ----CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHH
T ss_pred CCCCcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHH
Confidence 556888899999 9999999999999999 9999999998865
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=7.1e-07 Score=80.44 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=32.2
Q ss_pred cceEEE--ccccHHHHHHHHHC--CCeEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASA--GYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~--G~~V~~~d~~~~~~~~ 49 (294)
+||+|| |.||.++|..++.. |++|++||+++++++.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~ 40 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQG 40 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHH
Confidence 489999 99999999999985 7999999999987764
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-07 Score=87.06 Aligned_cols=104 Identities=14% Similarity=0.105 Sum_probs=74.3
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||+++...+.+.+
T Consensus 164 gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-------------------------------------- 205 (351)
T 3jtm_A 164 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE-------------------------------------- 205 (351)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHH--------------------------------------
T ss_pred CCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHh--------------------------------------
Confidence 4689999 999999999999999999999998754433221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| +...+++++.+++||+|+.++|-..+.+.-+-++..+.++++++|+..
T Consensus 206 ----------------~g--------------~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 255 (351)
T 3jtm_A 206 ----------------TG--------------AKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNN 255 (351)
T ss_dssp ----------------HC--------------CEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEEC
T ss_pred ----------------CC--------------CeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEEC
Confidence 12 234568888999999999999975443322334555668999998743
Q ss_pred CCC--CCHHHHHhhcC
Q psy13746 171 TSS--FLPSVLSEHST 184 (294)
Q Consensus 171 tSt--~~~~~ia~~l~ 184 (294)
+.+ +.-..+.+.+.
T Consensus 256 aRG~~vde~aL~~aL~ 271 (351)
T 3jtm_A 256 ARGAIMERQAVVDAVE 271 (351)
T ss_dssp SCGGGBCHHHHHHHHH
T ss_pred cCchhhCHHHHHHHHH
Confidence 333 34445666554
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=83.34 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=75.6
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+++|..+...|++|++||++++ +.
T Consensus 123 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------------------------------- 160 (303)
T 1qp8_A 123 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------------------------------- 160 (303)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----------------------------------------
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----------------------------------------
Confidence 34689999 99999999999999999999999874 10
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+ .....++++.+++||+|+.++|...+.+.-+-++..+.++++++++.
T Consensus 161 ------------------~--------------~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin 208 (303)
T 1qp8_A 161 ------------------P--------------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVN 208 (303)
T ss_dssp ------------------S--------------SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEE
T ss_pred ------------------C--------------cccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEE
Confidence 0 01134677789999999999998754332222456677899999875
Q ss_pred cCCC--CCHHHHHhhcC-CCCceeeeeec
Q psy13746 170 STSS--FLPSVLSEHST-HRSQFIVAHPV 195 (294)
Q Consensus 170 ~tSt--~~~~~ia~~l~-~~~~~ig~h~~ 195 (294)
.+++ +....+.+.+. ......+...+
T Consensus 209 ~srg~~vd~~aL~~aL~~g~i~gA~lDv~ 237 (303)
T 1qp8_A 209 VGRAEVLDRDGVLRILKERPQFIFASDVW 237 (303)
T ss_dssp CSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred CCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence 4443 23334555554 23333455555
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.7e-08 Score=86.96 Aligned_cols=114 Identities=15% Similarity=0.075 Sum_probs=77.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||++++..+..
T Consensus 137 gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~---------------------------------------- 176 (324)
T 3evt_A 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHF---------------------------------------- 176 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC----------------------------------------
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhH----------------------------------------
Confidence 3689999 9999999999999999999999987542110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.......++++.+++||+|+.++|...+.+.-+-++....++++++|+..
T Consensus 177 ------------------------------~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~ 226 (324)
T 3evt_A 177 ------------------------------HETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINI 226 (324)
T ss_dssp ------------------------------SEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEEC
T ss_pred ------------------------------hhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEc
Confidence 00122357788899999999999976654433335566678999998744
Q ss_pred CCC--CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 171 TSS--FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 171 tSt--~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
+.+ +.-+.+.+.+.. .....+...+.
T Consensus 227 aRG~~vd~~aL~~aL~~g~i~gA~lDV~~ 255 (324)
T 3evt_A 227 GRGPAVDTTALMTALDHHQLSMAALDVTE 255 (324)
T ss_dssp SCGGGBCHHHHHHHHHTTSCSEEEESSCS
T ss_pred CCChhhhHHHHHHHHHhCCceEEEeCCCC
Confidence 333 344466666642 23334444443
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.8e-07 Score=84.52 Aligned_cols=114 Identities=14% Similarity=0.077 Sum_probs=77.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||+++.. +.+.+
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~-------------------------------------- 200 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARA-------------------------------------- 200 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHH--------------------------------------
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHh--------------------------------------
Confidence 4689999 999999999999999999999998632 21111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| ++..+++++++++||+|+.++|...+.+.-+-++..+.++++++|+..
T Consensus 201 ----------------~g--------------~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 250 (352)
T 3gg9_A 201 ----------------DG--------------FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNT 250 (352)
T ss_dssp ----------------TT--------------CEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEEC
T ss_pred ----------------cC--------------ceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEEC
Confidence 12 234568888999999999999976654433335566778999999744
Q ss_pred CCC--CCHHHHHhhcC-CCCceeeeeec
Q psy13746 171 TSS--FLPSVLSEHST-HRSQFIVAHPV 195 (294)
Q Consensus 171 tSt--~~~~~ia~~l~-~~~~~ig~h~~ 195 (294)
+.+ +....+.+.+. ......+...+
T Consensus 251 aRg~~vd~~aL~~aL~~g~i~gA~lDV~ 278 (352)
T 3gg9_A 251 SRAELVEENGMVTALNRGRPGMAAIDVF 278 (352)
T ss_dssp SCGGGBCTTHHHHHHHHTSSSEEEECCC
T ss_pred CCchhhcHHHHHHHHHhCCccEEEeccc
Confidence 333 23335555554 23333444433
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-07 Score=81.76 Aligned_cols=103 Identities=23% Similarity=0.212 Sum_probs=71.3
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+++|..+...|++|++||++++. +.+.+
T Consensus 141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~------------------------------------- 182 (307)
T 1wwk_A 141 EGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKE------------------------------------- 182 (307)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHH-------------------------------------
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhh-------------------------------------
Confidence 34689999 999999999999999999999999865 32211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| +.. .++++.+++||+|+.++|...+.+.-+-++..+.++++++++.
T Consensus 183 -----------------~g--------------~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin 230 (307)
T 1wwk_A 183 -----------------VN--------------GKF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILIN 230 (307)
T ss_dssp -----------------TT--------------CEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEE
T ss_pred -----------------cC--------------ccc-cCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEE
Confidence 12 122 3677788999999999997654332121344556889999875
Q ss_pred cCCC--CCHHHHHhhcC
Q psy13746 170 STSS--FLPSVLSEHST 184 (294)
Q Consensus 170 ~tSt--~~~~~ia~~l~ 184 (294)
.+++ +....+.+.+.
T Consensus 231 ~arg~~vd~~aL~~aL~ 247 (307)
T 1wwk_A 231 TSRGPVVDTNALVKALK 247 (307)
T ss_dssp CSCGGGBCHHHHHHHHH
T ss_pred CCCCcccCHHHHHHHHH
Confidence 5444 23335555554
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.2e-07 Score=80.83 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=76.6
Q ss_pred ceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
||+|| |.||.++|..++..|+ +|.++|+++++++.....+.
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~------------------------------------ 44 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLA------------------------------------ 44 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHH------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHH------------------------------------
Confidence 68999 9999999999999888 79999999887753221111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--------------CcchHHHHHHHHHH
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--------------PEILQIKHQVYRAI 157 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l 157 (294)
..... .+ ...+++.++|++ ++++||+||++. ..+..+++++.+++
T Consensus 45 -------~~~~~---~~----------~~~~i~~t~d~~-a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i 103 (308)
T 2d4a_B 45 -------HAAAE---LG----------VDIRISGSNSYE-DMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKI 103 (308)
T ss_dssp -------HHHHH---HT----------CCCCEEEESCGG-GGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHH
T ss_pred -------Hhhhh---cC----------CCeEEEECCCHH-HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 012366667884 799999999993 44556778888999
Q ss_pred hcccCCCeEEEecCCCCCHHHHHhhcC-----CCCceeee
Q psy13746 158 DIFMSSNTILSSSTSSFLPSVLSEHST-----HRSQFIVA 192 (294)
Q Consensus 158 ~~~~~~~~ii~s~tSt~~~~~ia~~l~-----~~~~~ig~ 192 (294)
.+++ |+++++.. |.++..+...+. .|.|++|+
T Consensus 104 ~~~~-p~a~iiv~--tNPv~~~t~~~~k~~~~p~~rviG~ 140 (308)
T 2d4a_B 104 KAYA-KDAIVVIT--TNPVDAMTYVMYKKTGFPRERVIGF 140 (308)
T ss_dssp HHHC-TTCEEEEC--CSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred HHHC-CCeEEEEe--CCchHHHHHHHHHhcCCChhhEEEe
Confidence 9887 55543322 335554443332 24566665
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.1e-07 Score=80.28 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=31.8
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.|..+||+|| |.||.++|..++..|+ +|+++|+++
T Consensus 5 ~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~ 42 (315)
T 3tl2_A 5 TIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ 42 (315)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 3556799999 9999999999999999 999999994
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7e-07 Score=80.75 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=31.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
.+||+|| |.||.++|..++..|. +|.++|++++.++
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~ 45 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAI 45 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHH
Confidence 4799999 9999999999998875 8999999987544
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.6e-06 Score=82.56 Aligned_cols=78 Identities=19% Similarity=0.156 Sum_probs=54.0
Q ss_pred CCccceEEE--ccc--cHHHHHHHHHC----CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEE
Q psy13746 11 GGFYPDGII--GLI--GQAWAMIFASA----GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSL 82 (294)
Q Consensus 11 ~~~~~i~ii--G~m--G~~iA~~~~~~----G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (294)
|..+||+|| |.| |.++|..++.. |++|++||+++++++.......
T Consensus 1 m~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~--------------------------- 53 (480)
T 1obb_A 1 MPSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAK--------------------------- 53 (480)
T ss_dssp -CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHH---------------------------
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHH---------------------------
Confidence 334699999 886 45557777754 8999999999998876433211
Q ss_pred eecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCC
Q psy13746 83 YDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP 144 (294)
Q Consensus 83 ~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavp 144 (294)
.+.... ....+++.++|+.+++++||+||+++|
T Consensus 54 --------------------~~l~~~---------~~~~~I~~ttD~~eal~dAD~VIiaag 86 (480)
T 1obb_A 54 --------------------KYVEEV---------GADLKFEKTMNLDDVIIDADFVINTAM 86 (480)
T ss_dssp --------------------HHHHHT---------TCCCEEEEESCHHHHHTTCSEEEECCC
T ss_pred --------------------HHhccC---------CCCcEEEEECCHHHHhCCCCEEEECCC
Confidence 111111 012457788899778999999999996
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.7e-08 Score=87.70 Aligned_cols=102 Identities=19% Similarity=0.049 Sum_probs=72.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||+++......
T Consensus 140 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~---------------------------------------- 179 (324)
T 3hg7_A 140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF---------------------------------------- 179 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC----------------------------------------
T ss_pred cceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh----------------------------------------
Confidence 3689999 9999999999999999999999987321100
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.......++++++++||+|+.++|...+.+.-+-++....++++++|+..
T Consensus 180 ------------------------------~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~ 229 (324)
T 3hg7_A 180 ------------------------------DQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNV 229 (324)
T ss_dssp ------------------------------SEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEEC
T ss_pred ------------------------------hcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEEC
Confidence 00122467888899999999999976543332334556678999998744
Q ss_pred CCC--CCHHHHHhhcC
Q psy13746 171 TSS--FLPSVLSEHST 184 (294)
Q Consensus 171 tSt--~~~~~ia~~l~ 184 (294)
+.+ +.-..+.+.+.
T Consensus 230 aRG~~vde~aL~~aL~ 245 (324)
T 3hg7_A 230 GRGNAINEGDLLTALR 245 (324)
T ss_dssp SCGGGBCHHHHHHHHH
T ss_pred CCchhhCHHHHHHHHH
Confidence 333 34445666664
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-07 Score=85.26 Aligned_cols=111 Identities=13% Similarity=0.011 Sum_probs=67.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||++++...
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~------------------------------------------ 208 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGV------------------------------------------ 208 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTS------------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccccc------------------------------------------
Confidence 4789999 99999999999999999999999874300
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+ .....++++++++||+|+.++|...+.+.-+-++..+.++++++++..
T Consensus 209 -----------------~--------------~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~ 257 (340)
T 4dgs_A 209 -----------------D--------------WIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNV 257 (340)
T ss_dssp -----------------C--------------CEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEEC
T ss_pred -----------------C--------------ceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEEC
Confidence 0 123467888999999999999976655443436667778999998754
Q ss_pred CCCCCH--HHHHhhcCC-CCceeeeeecC
Q psy13746 171 TSSFLP--SVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 171 tSt~~~--~~ia~~l~~-~~~~ig~h~~~ 196 (294)
+.+-.+ ..+.+.+.. .....+...|.
T Consensus 258 aRG~vvde~aL~~aL~~g~i~gA~LDVf~ 286 (340)
T 4dgs_A 258 ARGNVVDEDALIEALKSGTIAGAGLDVFV 286 (340)
T ss_dssp SCC--------------CCSSEEEESCCS
T ss_pred CCCcccCHHHHHHHHHcCCceEEEeCCcC
Confidence 444222 245555542 23334555443
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-07 Score=84.13 Aligned_cols=103 Identities=18% Similarity=0.091 Sum_probs=72.5
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+++|+.+...|++|++||++++. +.+.+
T Consensus 164 ~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~------------------------------------- 205 (335)
T 2g76_A 164 NGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSAS------------------------------------- 205 (335)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHH-------------------------------------
T ss_pred CcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhh-------------------------------------
Confidence 34689999 999999999999999999999998765 21111
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| +.. .++++++++||+|+.++|...+.+.-+-++..+.++++++++.
T Consensus 206 -----------------~g--------------~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN 253 (335)
T 2g76_A 206 -----------------FG--------------VQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVN 253 (335)
T ss_dssp -----------------TT--------------CEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEE
T ss_pred -----------------cC--------------cee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEE
Confidence 12 122 3677889999999999998765432222456677899999875
Q ss_pred cCCCC--CHHHHHhhcC
Q psy13746 170 STSSF--LPSVLSEHST 184 (294)
Q Consensus 170 ~tSt~--~~~~ia~~l~ 184 (294)
.+++- ....+.+.+.
T Consensus 254 ~arg~vvd~~aL~~aL~ 270 (335)
T 2g76_A 254 CARGGIVDEGALLRALQ 270 (335)
T ss_dssp CSCTTSBCHHHHHHHHH
T ss_pred CCCccccCHHHHHHHHH
Confidence 44442 3335555554
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.1e-07 Score=83.19 Aligned_cols=102 Identities=15% Similarity=0.049 Sum_probs=73.4
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||+++...+..
T Consensus 173 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~---------------------------------------- 212 (345)
T 4g2n_A 173 GRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE---------------------------------------- 212 (345)
T ss_dssp TCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH----------------------------------------
T ss_pred CCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh----------------------------------------
Confidence 3689999 9999999999999999999999986442211
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| ....+++++.+++||+|+.++|-..+.+.-+-++....++++++|+..
T Consensus 213 ----------------~g--------------~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~ 262 (345)
T 4g2n_A 213 ----------------EG--------------AIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINI 262 (345)
T ss_dssp ----------------TT--------------CEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEEC
T ss_pred ----------------cC--------------CeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEEC
Confidence 01 234568888999999999999976554332334555668999998743
Q ss_pred CCC--CCHHHHHhhcC
Q psy13746 171 TSS--FLPSVLSEHST 184 (294)
Q Consensus 171 tSt--~~~~~ia~~l~ 184 (294)
+.+ +.-..+.+.+.
T Consensus 263 aRG~~vde~aL~~aL~ 278 (345)
T 4g2n_A 263 SRGDLINDDALIEALR 278 (345)
T ss_dssp SCGGGBCHHHHHHHHH
T ss_pred CCCchhCHHHHHHHHH
Confidence 333 34445666554
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-07 Score=85.34 Aligned_cols=102 Identities=23% Similarity=0.229 Sum_probs=71.3
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+++|..+...|++|++||++++... +.+
T Consensus 141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~------------------------------------- 182 (313)
T 2ekl_A 141 AGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AEK------------------------------------- 182 (313)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HHH-------------------------------------
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HHh-------------------------------------
Confidence 34689999 99999999999999999999999986531 111
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH-HHHhcccCCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~ 168 (294)
.| ... .++++.+++||+|+.++|...+.+ .++ ++..+.++++++++
T Consensus 183 -----------------~g--------------~~~-~~l~ell~~aDvVvl~~P~~~~t~-~li~~~~l~~mk~ga~lI 229 (313)
T 2ekl_A 183 -----------------IN--------------AKA-VSLEELLKNSDVISLHVTVSKDAK-PIIDYPQFELMKDNVIIV 229 (313)
T ss_dssp -----------------TT--------------CEE-CCHHHHHHHCSEEEECCCCCTTSC-CSBCHHHHHHSCTTEEEE
T ss_pred -----------------cC--------------cee-cCHHHHHhhCCEEEEeccCChHHH-HhhCHHHHhcCCCCCEEE
Confidence 12 122 367778899999999999765432 122 34445688899987
Q ss_pred ecCCC--CCHHHHHhhcC
Q psy13746 169 SSTSS--FLPSVLSEHST 184 (294)
Q Consensus 169 s~tSt--~~~~~ia~~l~ 184 (294)
..+++ +....+.+.+.
T Consensus 230 n~arg~~vd~~aL~~aL~ 247 (313)
T 2ekl_A 230 NTSRAVAVNGKALLDYIK 247 (313)
T ss_dssp ESSCGGGBCHHHHHHHHH
T ss_pred ECCCCcccCHHHHHHHHH
Confidence 55444 33335666664
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.8e-08 Score=86.99 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=72.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||++++..+..
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~---------------------------------------- 178 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV---------------------------------------- 178 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC----------------------------------------
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh----------------------------------------
Confidence 3689999 9999999999999999999999987532100
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.......++++.+++||+|+.++|...+.+.-+-++....++++++|+..
T Consensus 179 ------------------------------~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 228 (315)
T 3pp8_A 179 ------------------------------ESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNL 228 (315)
T ss_dssp ------------------------------EEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEEC
T ss_pred ------------------------------hhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEEC
Confidence 00111257788899999999999976654332325666778999998743
Q ss_pred CCC--CCHHHHHhhcC
Q psy13746 171 TSS--FLPSVLSEHST 184 (294)
Q Consensus 171 tSt--~~~~~ia~~l~ 184 (294)
+.+ +.-..+.+.+.
T Consensus 229 aRG~~vd~~aL~~aL~ 244 (315)
T 3pp8_A 229 ARGVHVQEADLLAALD 244 (315)
T ss_dssp SCGGGBCHHHHHHHHH
T ss_pred CCChhhhHHHHHHHHH
Confidence 333 34445666654
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-06 Score=79.44 Aligned_cols=98 Identities=11% Similarity=0.100 Sum_probs=70.0
Q ss_pred CccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..+||+|| |.||.++|..++..|+ +|.++|+++++++.....+.+.
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~------------------------------ 69 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHG------------------------------ 69 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHH------------------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhh------------------------------
Confidence 56799999 9999999999999997 9999999998765432222110
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--------------CcchHHHHHH
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--------------PEILQIKHQV 153 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--------------pe~~~~k~~~ 153 (294)
. +.....++..++|+++ +++||+||.+. ..+..+++++
T Consensus 70 -----------------~----------~~~~~~~i~~t~d~~~-~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i 121 (330)
T 3ldh_A 70 -----------------S----------LFLHTAKIVSGKDYSV-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFI 121 (330)
T ss_dssp -----------------G----------GGSCCSEEEEESSSCS-CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHH
T ss_pred -----------------h----------hcccCCeEEEcCCHHH-hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHH
Confidence 0 0011234666788985 99999999873 3455677888
Q ss_pred HHHHhcccCCCeEEE
Q psy13746 154 YRAIDIFMSSNTILS 168 (294)
Q Consensus 154 ~~~l~~~~~~~~ii~ 168 (294)
.+++.++. |++++.
T Consensus 122 ~~~I~k~~-P~a~il 135 (330)
T 3ldh_A 122 IPNIVKHS-PDCLKE 135 (330)
T ss_dssp HHHHHHHC-TTCEEE
T ss_pred HHHHHhhC-CCceEE
Confidence 88999984 555544
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.6e-07 Score=80.02 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=34.7
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIE 48 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~ 48 (294)
|+.+||+|| |.||.++|..++..|+ +|.++|+++++++
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~ 43 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPN 43 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHH
Confidence 667899999 9999999999999998 9999999998765
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.9e-07 Score=83.95 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=69.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||+++....
T Consensus 156 gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~------------------------------------------ 193 (416)
T 3k5p_A 156 GKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY------------------------------------------ 193 (416)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB------------------------------------------
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc------------------------------------------
Confidence 3689999 99999999999999999999998742100
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.......++++.+++||+|+.++|...+.+.-+-++....++++++++..
T Consensus 194 ------------------------------~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~ 243 (416)
T 3k5p_A 194 ------------------------------GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINN 243 (416)
T ss_dssp ------------------------------TTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEEC
T ss_pred ------------------------------cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEEC
Confidence 00133468888999999999999987654332224555668999999744
Q ss_pred CCC--CCHHHHHhhcC
Q psy13746 171 TSS--FLPSVLSEHST 184 (294)
Q Consensus 171 tSt--~~~~~ia~~l~ 184 (294)
+.+ +....+.+.+.
T Consensus 244 aRG~vvd~~aL~~aL~ 259 (416)
T 3k5p_A 244 ARGSDVDLEALAKVLQ 259 (416)
T ss_dssp SCTTSBCHHHHHHHHH
T ss_pred CCChhhhHHHHHHHHH
Confidence 433 34446666664
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=6.5e-07 Score=81.97 Aligned_cols=104 Identities=18% Similarity=0.150 Sum_probs=72.2
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+.+|..+...|++|++||++++... ..+
T Consensus 167 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~------------------------------------- 208 (347)
T 1mx3_A 167 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERA------------------------------------- 208 (347)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHH-------------------------------------
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-Hhh-------------------------------------
Confidence 34689999 99999999999999999999999865311 100
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| .....++++.+++||+|+.++|.+.+.+.-+-++..+.++++++|+.
T Consensus 209 -----------------~g--------------~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN 257 (347)
T 1mx3_A 209 -----------------LG--------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257 (347)
T ss_dssp -----------------HT--------------CEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEE
T ss_pred -----------------cC--------------CeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEE
Confidence 12 12345788889999999999998654332222455567899999875
Q ss_pred cCCC--CCHHHHHhhcC
Q psy13746 170 STSS--FLPSVLSEHST 184 (294)
Q Consensus 170 ~tSt--~~~~~ia~~l~ 184 (294)
.+++ +....+.+.+.
T Consensus 258 ~arg~~vd~~aL~~aL~ 274 (347)
T 1mx3_A 258 TARGGLVDEKALAQALK 274 (347)
T ss_dssp CSCTTSBCHHHHHHHHH
T ss_pred CCCChHHhHHHHHHHHH
Confidence 4444 33345666554
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.7e-06 Score=65.66 Aligned_cols=40 Identities=28% Similarity=0.230 Sum_probs=35.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+++|.|+ |.+|+.+|..|.+.|++|+++|++++.++.+.+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~ 47 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLED 47 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 4689999 999999999999999999999999998876543
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.36 E-value=6.3e-07 Score=83.28 Aligned_cols=104 Identities=9% Similarity=0.013 Sum_probs=73.5
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+++|..+...|++|++||+++...+.+.+
T Consensus 190 ~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~------------------------------------- 232 (393)
T 2nac_A 190 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE------------------------------------- 232 (393)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH-------------------------------------
T ss_pred CCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhh-------------------------------------
Confidence 34689999 999999999999999999999998754332211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH-HHHhcccCCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~ 168 (294)
.| +....++++.+++||+|+.++|...+.+ .++ ++..+.++++++|+
T Consensus 233 -----------------~G--------------~~~~~~l~ell~~aDvV~l~~Plt~~t~-~li~~~~l~~mk~gailI 280 (393)
T 2nac_A 233 -----------------LN--------------LTWHATREDMYPVCDVVTLNCPLHPETE-HMINDETLKLFKRGAYIV 280 (393)
T ss_dssp -----------------HT--------------CEECSSHHHHGGGCSEEEECSCCCTTTT-TCBSHHHHTTSCTTEEEE
T ss_pred -----------------cC--------------ceecCCHHHHHhcCCEEEEecCCchHHH-HHhhHHHHhhCCCCCEEE
Confidence 12 2234578888999999999999765432 333 45666789999987
Q ss_pred ecCCC--CCHHHHHhhcC
Q psy13746 169 SSTSS--FLPSVLSEHST 184 (294)
Q Consensus 169 s~tSt--~~~~~ia~~l~ 184 (294)
..+.+ +.-..+.+.+.
T Consensus 281 N~aRG~~vde~aL~~aL~ 298 (393)
T 2nac_A 281 NTARGKLCDRDAVARALE 298 (393)
T ss_dssp ECSCGGGBCHHHHHHHHH
T ss_pred ECCCchHhhHHHHHHHHH
Confidence 44443 23335666664
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-06 Score=80.71 Aligned_cols=75 Identities=16% Similarity=0.079 Sum_probs=56.1
Q ss_pred CCccceEEE--ccc--cHHHHHHHHH----CCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEE
Q psy13746 11 GGFYPDGII--GLI--GQAWAMIFAS----AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSL 82 (294)
Q Consensus 11 ~~~~~i~ii--G~m--G~~iA~~~~~----~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (294)
|+-+||+|| |.| |.+++..++. .| +|++||++++++++......
T Consensus 3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~--------------------------- 54 (450)
T 3fef_A 3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGN--------------------------- 54 (450)
T ss_dssp CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHT---------------------------
T ss_pred CCCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHH---------------------------
Confidence 444699999 987 5789988886 57 99999999998876532111
Q ss_pred eecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCc
Q psy13746 83 YDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE 145 (294)
Q Consensus 83 ~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe 145 (294)
.. . . ...+++.++|+++|+++||+||++++.
T Consensus 55 ---------------------~l---------~-~-~~~~I~~TtD~~eAl~dADfVI~airv 85 (450)
T 3fef_A 55 ---------------------HS---------G-N-GRWRYEAVSTLKKALSAADIVIISILP 85 (450)
T ss_dssp ---------------------TS---------T-T-SCEEEEEESSHHHHHTTCSEEEECCCS
T ss_pred ---------------------HH---------h-c-cCCeEEEECCHHHHhcCCCEEEecccc
Confidence 00 0 0 224578899999999999999999963
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.7e-06 Score=75.20 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=32.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
+||+|| |.||.++|..++..|+ +|.+||++++.++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~ 39 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAV 39 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHH
Confidence 489999 9999999999999998 9999999998865
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.35 E-value=4.4e-06 Score=75.12 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=32.9
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
.+||+|| |.||..+|..|+.+|+ +|+++|++++.++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~ 46 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE 46 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHH
Confidence 3689999 9999999999999999 9999999987765
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.4e-07 Score=83.35 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=74.0
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+++|..+...|++|++||+++...+.+.+
T Consensus 144 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~------------------------------------- 186 (330)
T 4e5n_A 144 DNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQR------------------------------------- 186 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHH-------------------------------------
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHh-------------------------------------
Confidence 34689999 999999999999999999999999744332211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| ... .++++++++||+|+.++|...+.+.-+-++..+.++++++|+.
T Consensus 187 -----------------~g--------------~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN 234 (330)
T 4e5n_A 187 -----------------LG--------------LRQ-VACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVN 234 (330)
T ss_dssp -----------------HT--------------EEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEE
T ss_pred -----------------cC--------------cee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEE
Confidence 12 122 3688889999999999997654433333566777899999974
Q ss_pred cCCC--CCHHHHHhhcC
Q psy13746 170 STSS--FLPSVLSEHST 184 (294)
Q Consensus 170 ~tSt--~~~~~ia~~l~ 184 (294)
.+.+ +....+.+.+.
T Consensus 235 ~arg~~vd~~aL~~aL~ 251 (330)
T 4e5n_A 235 PCRGSVVDEAAVLAALE 251 (330)
T ss_dssp CSCGGGBCHHHHHHHHH
T ss_pred CCCCchhCHHHHHHHHH
Confidence 4433 34445665554
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-06 Score=80.11 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=71.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||+++.. +.+.+
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~-------------------------------------- 216 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLEE-------------------------------------- 216 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHHH--------------------------------------
T ss_pred CCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHhh--------------------------------------
Confidence 3689999 999999999999999999999998532 21111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| .. ..++++.+++||+|+.++|...+.+.-+-++..+.++++++|+ |
T Consensus 217 ----------------~g--------------~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailI-N 264 (365)
T 4hy3_A 217 ----------------NG--------------VE-PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFI-L 264 (365)
T ss_dssp ----------------TT--------------CE-ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEE-E
T ss_pred ----------------cC--------------ee-eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEE-E
Confidence 12 12 2478888999999999999876544333356667789999987 4
Q ss_pred CCC---CCHHHHHhhcC
Q psy13746 171 TSS---FLPSVLSEHST 184 (294)
Q Consensus 171 tSt---~~~~~ia~~l~ 184 (294)
++. +.-..+.+.+.
T Consensus 265 ~aRG~~vde~aL~~aL~ 281 (365)
T 4hy3_A 265 LSRADVVDFDALMAAVS 281 (365)
T ss_dssp CSCGGGSCHHHHHHHHH
T ss_pred CcCCchhCHHHHHHHHH
Confidence 553 34446666665
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.1e-07 Score=80.15 Aligned_cols=97 Identities=21% Similarity=0.162 Sum_probs=69.7
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+++|..+...|++|++||++++...
T Consensus 143 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~----------------------------------------- 181 (311)
T 2cuk_A 143 QGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP----------------------------------------- 181 (311)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-----------------------------------------
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc-----------------------------------------
Confidence 34689999 99999999999999999999999864311
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH-HHHhcccCCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~ 168 (294)
+. ..++++.+++||+|+.++|.+.+.+ .++ ++..+.++++++++
T Consensus 182 ---------------------------------~~-~~~l~ell~~aDvV~l~~p~~~~t~-~li~~~~l~~mk~ga~li 226 (311)
T 2cuk_A 182 ---------------------------------YP-FLSLEELLKEADVVSLHTPLTPETH-RLLNRERLFAMKRGAILL 226 (311)
T ss_dssp ---------------------------------SC-BCCHHHHHHHCSEEEECCCCCTTTT-TCBCHHHHTTSCTTCEEE
T ss_pred ---------------------------------cc-cCCHHHHHhhCCEEEEeCCCChHHH-hhcCHHHHhhCCCCcEEE
Confidence 01 2467778899999999999875433 233 34556788999987
Q ss_pred ecCCCC--CHHHHHhhcC
Q psy13746 169 SSTSSF--LPSVLSEHST 184 (294)
Q Consensus 169 s~tSt~--~~~~ia~~l~ 184 (294)
..+++- ....+.+.+.
T Consensus 227 n~srg~~vd~~aL~~aL~ 244 (311)
T 2cuk_A 227 NTARGALVDTEALVEALR 244 (311)
T ss_dssp ECSCGGGBCHHHHHHHHT
T ss_pred ECCCCCccCHHHHHHHHh
Confidence 544432 3335666665
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=8.9e-07 Score=82.68 Aligned_cols=100 Identities=21% Similarity=0.206 Sum_probs=71.3
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||+++...
T Consensus 145 gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------------------------------------------- 181 (404)
T 1sc6_A 145 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP------------------------------------------- 181 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC-------------------------------------------
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc-------------------------------------------
Confidence 3689999 9999999999999999999999975320
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| ......++++.+++||+|+.++|...+.+.-+-++..+.++++++++..
T Consensus 182 ----------------~~-------------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~ 232 (404)
T 1sc6_A 182 ----------------LG-------------NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINA 232 (404)
T ss_dssp ----------------CT-------------TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEEC
T ss_pred ----------------cC-------------CceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEEC
Confidence 00 0233457888899999999999987654332224455668999998744
Q ss_pred CCC--CCHHHHHhhcC
Q psy13746 171 TSS--FLPSVLSEHST 184 (294)
Q Consensus 171 tSt--~~~~~ia~~l~ 184 (294)
+.+ +....+.+.+.
T Consensus 233 aRg~~vd~~aL~~aL~ 248 (404)
T 1sc6_A 233 SRGTVVDIPALADALA 248 (404)
T ss_dssp SCSSSBCHHHHHHHHH
T ss_pred CCChHHhHHHHHHHHH
Confidence 333 23335666554
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.7e-07 Score=82.43 Aligned_cols=185 Identities=11% Similarity=0.045 Sum_probs=112.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||..+|..|+++|++|++|+|+++.++.. .
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~----~------------------------------------ 42 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYY----T------------------------------------ 42 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEE----S------------------------------------
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEE----e------------------------------------
Confidence 589999 9999999999999999999999996543210 0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhc-cCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL-EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~-~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
..|.. ....+.+..+++ .++|+||.|+|... -.++++++.+.++++++|++.
T Consensus 43 --------------~~g~~-----------~~~~~~~~~~~~~~~~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~~ 95 (294)
T 3g17_A 43 --------------VPHAP-----------AQDIVVKGYEDVTNTFDVIIIAVKTHQ--LDAVIPHLTYLAHEDTLIILA 95 (294)
T ss_dssp --------------STTSC-----------CEEEEEEEGGGCCSCEEEEEECSCGGG--HHHHGGGHHHHEEEEEEEEEC
T ss_pred --------------cCCee-----------ccceecCchHhcCCCCCEEEEeCCccC--HHHHHHHHHHhhCCCCEEEEe
Confidence 00100 011222344444 88999999999864 457888888888888888877
Q ss_pred CCCCCHHHHHhhcCCCCceeeee------ecCCCCC-CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc---
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAH------PVNPPYF-IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG--- 240 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h------~~~p~~~-~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g--- 240 (294)
.-++...+. ++. .+.++.- ...|-.. .....+..+ +.+..+.+.++|+.-|.++.+. .|..+
T Consensus 96 ~nGi~~~~~---~~~-~~v~~g~~~~~a~~~~pg~v~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~-~di~~~~w 167 (294)
T 3g17_A 96 QNGYGQLEH---IPF-KNVCQAVVYISGQKKGDVVTHFRDYQLRIQ---DNALTRQFRDLVQDSQIDIVLE-ANIQQAIW 167 (294)
T ss_dssp CSSCCCGGG---CCC-SCEEECEEEEEEEEETTEEEEEEEEEEEEE---CSHHHHHHHHHTTTSSCEEEEE-SSHHHHHH
T ss_pred ccCcccHhh---CCC-CcEEEEEEEEEEEEcCCCEEEECCCEEecC---ccHHHHHHHHHHHhCCCceEEC-hHHHHHHH
Confidence 777765432 322 2333321 1112110 001112222 3455677778888777776665 45433
Q ss_pred --cHHHH---H--------------------HHHHHHHHHHHHHcCCCC--HHHHHHHHH
Q psy13746 241 --FALNR---I--------------------QFAVLNECYHLVHDGVLS--AKDIDRVMS 273 (294)
Q Consensus 241 --~v~nr---i--------------------~~a~~~Ea~~l~~~~~~~--~~~id~a~~ 273 (294)
++.|- + +..++.|+.++++..|++ .+.++..+.
T Consensus 168 ~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~ 227 (294)
T 3g17_A 168 YKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMT 227 (294)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 23332 1 123578888888888765 444555554
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.31 E-value=7.5e-07 Score=82.12 Aligned_cols=105 Identities=12% Similarity=0.069 Sum_probs=74.2
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCe-EEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYK-VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~-V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.-++|+|| |.||+++|..+...|++ |++||+++...+.+.+
T Consensus 163 ~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~------------------------------------ 206 (364)
T 2j6i_A 163 EGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEK------------------------------------ 206 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHH------------------------------------
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHh------------------------------------
Confidence 34689999 99999999999999997 9999998765443211
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.| +....++++.+++||+|+.++|...+.+.-+-++..+.++++++|+
T Consensus 207 ------------------~g--------------~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lI 254 (364)
T 2j6i_A 207 ------------------VG--------------ARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 254 (364)
T ss_dssp ------------------TT--------------EEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE
T ss_pred ------------------cC--------------cEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEE
Confidence 12 2334578888999999999999875433322245556789999887
Q ss_pred ecCCC--CCHHHHHhhcC
Q psy13746 169 SSTSS--FLPSVLSEHST 184 (294)
Q Consensus 169 s~tSt--~~~~~ia~~l~ 184 (294)
..+.+ +....+.+.+.
T Consensus 255 n~arG~~vd~~aL~~aL~ 272 (364)
T 2j6i_A 255 NTARGAICVAEDVAAALE 272 (364)
T ss_dssp ECSCGGGBCHHHHHHHHH
T ss_pred ECCCCchhCHHHHHHHHH
Confidence 44443 34445666654
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.29 E-value=4.8e-06 Score=79.15 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=30.1
Q ss_pred cceEEE--ccc-cHHHHHHHHHC-----CCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLI-GQAWAMIFASA-----GYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~m-G~~iA~~~~~~-----G~~V~~~d~~~~~~~~~ 50 (294)
+||+|| |.+ |.++|..|+.. |.+|.+||+++++++..
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~ 73 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRI 73 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHH
Confidence 599999 776 55578788887 67999999999887764
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=79.72 Aligned_cols=113 Identities=16% Similarity=0.137 Sum_probs=75.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||++++.. +.+
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-------------------------------------- 185 (333)
T 1j4a_A 146 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK-------------------------------------- 185 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH--------------------------------------
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh--------------------------------------
Confidence 3689999 9999999999999999999999988653 111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+ ....+++++.+++||+|+.++|...+.+.-+-++..+.++++++++..
T Consensus 186 -----------------~--------------~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~ 234 (333)
T 1j4a_A 186 -----------------K--------------GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNV 234 (333)
T ss_dssp -----------------T--------------TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEEC
T ss_pred -----------------h--------------CeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEEC
Confidence 0 012346777889999999999976653321213444568899998754
Q ss_pred CCC--CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TSS--FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tSt--~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
+++ +....+.+.+. ......+...|.
T Consensus 235 arg~~vd~~aL~~aL~~g~i~gA~LDV~~ 263 (333)
T 1j4a_A 235 SRGPLVDTDAVIRGLDSGKIFGYAMDVYE 263 (333)
T ss_dssp SCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred CCCcccCHHHHHHHHHhCCceEEEEecCC
Confidence 443 34446666654 222333444443
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.8e-06 Score=77.79 Aligned_cols=89 Identities=13% Similarity=0.183 Sum_probs=65.9
Q ss_pred CccceEEE--ccccHHHHHHHHHC-CC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASA-GY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~-G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++|+|| |.||+.++..+++. |+ +|++||+++++.++..+.+
T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~--------------------------------- 180 (312)
T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV--------------------------------- 180 (312)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHS---------------------------------
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHh---------------------------------
Confidence 34689999 99999999999886 86 9999999998877544321
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
| ..+...++++++++++|+||.|+|.. ..++.. +.++++++|
T Consensus 181 --------------------~------------~~~~~~~~~~e~v~~aDiVi~atp~~----~~v~~~--~~l~~g~~v 222 (312)
T 2i99_A 181 --------------------Q------------GEVRVCSSVQEAVAGADVIITVTLAT----EPILFG--EWVKPGAHI 222 (312)
T ss_dssp --------------------S------------SCCEECSSHHHHHTTCSEEEECCCCS----SCCBCG--GGSCTTCEE
T ss_pred --------------------h------------CCeEEeCCHHHHHhcCCEEEEEeCCC----CcccCH--HHcCCCcEE
Confidence 1 01345678888899999999999963 233322 567888888
Q ss_pred EecC
Q psy13746 168 SSST 171 (294)
Q Consensus 168 ~s~t 171 (294)
++.+
T Consensus 223 i~~g 226 (312)
T 2i99_A 223 NAVG 226 (312)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7643
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.7e-06 Score=73.44 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=70.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||+.+|..|+ +|++|++|+|+++.++...+. |+.+..
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~-----------------------G~~~~~--------- 49 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSE-----------------------GIRLYK--------- 49 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-----------------------CEEEEE---------
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhC-----------------------CceEec---------
Confidence 589999 999999999999 999999999999877655431 111100
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
++ ......+... .+++.++|+||.|++... -.+++.++.+. ++++ |++..
T Consensus 50 -------------------~~----~~~~~~~~~~---~~~~~~~D~vilavK~~~--~~~~l~~l~~~-~~~~-ivs~~ 99 (307)
T 3ego_A 50 -------------------GG----EEFRADCSAD---TSINSDFDLLVVTVKQHQ--LQSVFSSLERI-GKTN-ILFLQ 99 (307)
T ss_dssp -------------------TT----EEEEECCEEE---SSCCSCCSEEEECCCGGG--HHHHHHHTTSS-CCCE-EEECC
T ss_pred -------------------CC----Ceeccccccc---ccccCCCCEEEEEeCHHH--HHHHHHHhhcC-CCCe-EEEec
Confidence 00 0000011111 234678999999998754 45677888764 6677 66666
Q ss_pred CCCCHH-HHHhhcC
Q psy13746 172 SSFLPS-VLSEHST 184 (294)
Q Consensus 172 St~~~~-~ia~~l~ 184 (294)
-++... .+++.++
T Consensus 100 nGi~~~e~l~~~~~ 113 (307)
T 3ego_A 100 NGMGHIHDLKDWHV 113 (307)
T ss_dssp SSSHHHHHHHTCCC
T ss_pred CCccHHHHHHHhCC
Confidence 777654 4554443
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.24 E-value=5.4e-07 Score=79.79 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=32.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
++|+|| |.||+++|..|++.|++|++|||++++.++
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~ 167 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIK 167 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 589999 999999999999999999999999877654
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-06 Score=80.47 Aligned_cols=112 Identities=19% Similarity=0.147 Sum_probs=76.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||++++. . ..
T Consensus 148 gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~----~~----------------------------------- 186 (343)
T 2yq5_A 148 NLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP--E----FE----------------------------------- 186 (343)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG--G----GT-----------------------------------
T ss_pred CCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh--h----hh-----------------------------------
Confidence 3689999 999999999999999999999998754 0 00
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.+ ... .++++++++||+|+.++|-..+.+.-+-++....++++++|+..
T Consensus 187 ----------------~~--------------~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 235 (343)
T 2yq5_A 187 ----------------PF--------------LTY-TDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINC 235 (343)
T ss_dssp ----------------TT--------------CEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEEC
T ss_pred ----------------cc--------------ccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEEC
Confidence 00 122 37888899999999999975543332334555668999999744
Q ss_pred CCC--CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TSS--FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tSt--~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
+.+ +....+.+.+. ......+...+.
T Consensus 236 aRg~~vd~~aL~~aL~~g~i~gA~LDV~~ 264 (343)
T 2yq5_A 236 ARGELVDTGALIKALQDGEIAGAGLDTLA 264 (343)
T ss_dssp SCGGGBCHHHHHHHHHHTSSSCEEESCCT
T ss_pred CCChhhhHHHHHHHHHcCCCcEEEecccc
Confidence 333 34446666654 233344555443
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=63.38 Aligned_cols=40 Identities=5% Similarity=0.179 Sum_probs=35.9
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.++|.|+ |.+|..+|..|...|++|+++|++++.++.+.+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~ 48 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE 48 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 3689999 999999999999999999999999999876643
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.8e-05 Score=61.64 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=34.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++|+|+ |.+|+.+|..|.+.|++|+++|++++.++...
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~ 44 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKAS 44 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 589999 99999999999999999999999998776543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.6e-05 Score=65.53 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=34.8
Q ss_pred ccceEEE--ccccHHHHHHHHHC-CCeEEEEeCChHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASA-GYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~-G~~V~~~d~~~~~~~~~~ 51 (294)
-++|.|+ |.||..+|..|.+. |++|+++|+++++++.+.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~ 80 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHR 80 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH
Confidence 3589999 99999999999999 999999999998877654
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.5e-06 Score=67.74 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=34.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++|+|| |.||+.++..|+..|++|++||+++++.++..
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a 61 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFA 61 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Confidence 689999 99999999999999999999999998876543
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-06 Score=80.04 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=73.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+++|..+...|++|++||+..+...
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~------------------------------------------- 156 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG------------------------------------------- 156 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-------------------------------------------
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-------------------------------------------
Confidence 689999 99999999999999999999997432210
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH----HHHHHHHHHhcccCCCeEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ----IKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~----~k~~~~~~l~~~~~~~~ii 167 (294)
.+ ....++++++++||+|+.++|-..+ .+.-+-++....+++++++
T Consensus 157 ---------------~~---------------~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gail 206 (381)
T 3oet_A 157 ---------------DE---------------GDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAIL 206 (381)
T ss_dssp ---------------CC---------------SCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEE
T ss_pred ---------------cC---------------cccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEE
Confidence 00 1135788889999999999996644 2222224455568999998
Q ss_pred EecCCC---CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 168 SSSTSS---FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 168 ~s~tSt---~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
+ |+|. +.-..+.+.+.. .....+...+.
T Consensus 207 I-N~aRG~vvde~aL~~aL~~g~i~gA~LDV~e 238 (381)
T 3oet_A 207 I-NACRGPVVDNAALLARLNAGQPLSVVLDVWE 238 (381)
T ss_dssp E-ECSCGGGBCHHHHHHHHHTTCCEEEEESCCT
T ss_pred E-ECCCCcccCHHHHHHHHHhCCCeEEEeeccc
Confidence 7 5553 344466666542 33444555544
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-05 Score=73.71 Aligned_cols=96 Identities=22% Similarity=0.198 Sum_probs=65.8
Q ss_pred CCccceEEE---ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeec
Q psy13746 11 GGFYPDGII---GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDV 85 (294)
Q Consensus 11 ~~~~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 85 (294)
|..+||+|| |.+|+++|..++..|. +|.++|+++++++.-...+.
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~------------------------------ 55 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIR------------------------------ 55 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHH------------------------------
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhh------------------------------
Confidence 344799999 7899999999999984 89999999877653221111
Q ss_pred chHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCc--------------chHHHH
Q psy13746 86 LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE--------------ILQIKH 151 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe--------------~~~~k~ 151 (294)
+ +... ..++++++++.+++++||+||.+... +..+.+
T Consensus 56 --------------------~-~~~~--------~~~i~~t~d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~ 106 (343)
T 3fi9_A 56 --------------------H-CGFE--------GLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAA 106 (343)
T ss_dssp --------------------H-HCCT--------TCCCEEESCHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHH
T ss_pred --------------------h-CcCC--------CCceEEcCCHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHH
Confidence 0 0000 12466778888789999999998522 234455
Q ss_pred HHHHHHhcccCCCe
Q psy13746 152 QVYRAIDIFMSSNT 165 (294)
Q Consensus 152 ~~~~~l~~~~~~~~ 165 (294)
++..++.++++...
T Consensus 107 ~i~~~i~~~~p~a~ 120 (343)
T 3fi9_A 107 QLGKDIKSYCPDCK 120 (343)
T ss_dssp HHHHHHHHHCTTCC
T ss_pred HHHHHHHHhccCcE
Confidence 66677888775553
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-05 Score=71.00 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=34.6
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
++..+||+|| |.||.++|..++..|+ +|.++|+++++++.
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g 59 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG 59 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHH
Confidence 4566899999 9999999999999997 89999999877654
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=2e-06 Score=78.28 Aligned_cols=100 Identities=21% Similarity=0.227 Sum_probs=70.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|++|++||++++.. + .
T Consensus 145 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~----~----------------------------------- 183 (333)
T 1dxy_A 145 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D----H----------------------------------- 183 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C----C-----------------------------------
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h----H-----------------------------------
Confidence 3689999 9999999999999999999999986431 0 0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.+ ... .++++.+++||+|+.++|...+.+.-+-++..+.++++++++..
T Consensus 184 ----------------~~--------------~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~ 232 (333)
T 1dxy_A 184 ----------------PD--------------FDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINT 232 (333)
T ss_dssp ----------------TT--------------CEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEEC
T ss_pred ----------------hc--------------ccc-CCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEEC
Confidence 00 122 36778889999999999987654332224455668999998744
Q ss_pred CCC--CCHHHHHhhcC
Q psy13746 171 TSS--FLPSVLSEHST 184 (294)
Q Consensus 171 tSt--~~~~~ia~~l~ 184 (294)
+++ +....+.+.+.
T Consensus 233 srg~~vd~~aL~~aL~ 248 (333)
T 1dxy_A 233 ARPNLIDTQAMLSNLK 248 (333)
T ss_dssp SCTTSBCHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHH
Confidence 443 34446666664
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.5e-05 Score=69.89 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=33.1
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
+|+|| |.||+++|..|...|++|+++||++++.+...
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~ 156 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALA 156 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 89999 99999999999999999999999988765543
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.6e-05 Score=69.77 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=33.4
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
.+||+|| |.||.++|..++..|+ +|.++|+++++++.
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g 45 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMG 45 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHH
Confidence 4799999 9999999999999997 99999999887664
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=5.4e-05 Score=68.60 Aligned_cols=44 Identities=16% Similarity=0.384 Sum_probs=34.5
Q ss_pred CCCCCCCCccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 5 ASFPAQGGFYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 5 ~~~~~~~~~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
++|+.+.. +||+|| |.+|.+++..++..+. ++.++|+++++++.
T Consensus 2 ~~~~~~~~-~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g 49 (326)
T 2zqz_A 2 ASITDKDH-QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKG 49 (326)
T ss_dssp ----CCCC-CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHH
T ss_pred CccccCCC-CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHH
Confidence 45666554 689999 9999999999998886 89999999887764
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.5e-06 Score=77.88 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=68.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+++|..+...|++|++||++++..+
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~------------------------------------------- 153 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQARE------------------------------------------- 153 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHHS-------------------------------------------
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhhc-------------------------------------------
Confidence 689999 99999999999999999999997653210
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH----HHHHHHHHHhcccCCCeEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ----IKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~----~k~~~~~~l~~~~~~~~ii 167 (294)
.| . ...++++.+++||+|+.++|...+ .+.-+-++..+.+++++++
T Consensus 154 ---------------~g--------------~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gail 203 (380)
T 2o4c_A 154 ---------------PD--------------G-EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWL 203 (380)
T ss_dssp ---------------TT--------------S-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEE
T ss_pred ---------------cC--------------c-ccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEE
Confidence 01 0 124677888999999999997654 2221224455678999998
Q ss_pred EecCCC--CCHHHHHhhcC
Q psy13746 168 SSSTSS--FLPSVLSEHST 184 (294)
Q Consensus 168 ~s~tSt--~~~~~ia~~l~ 184 (294)
+..+.+ +....+.+.+.
T Consensus 204 IN~sRG~vvd~~aL~~aL~ 222 (380)
T 2o4c_A 204 VNASRGAVVDNQALRRLLE 222 (380)
T ss_dssp EECSCGGGBCHHHHHHHHH
T ss_pred EECCCCcccCHHHHHHHHH
Confidence 743333 23345666654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2e-05 Score=63.19 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=34.5
Q ss_pred CCCCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 8 PAQGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 8 ~~~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
|.+..-++|.|+ |.+|+.+|..|...|++|+++|+++++++.
T Consensus 14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~ 57 (155)
T 2g1u_A 14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR 57 (155)
T ss_dssp ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 334445789999 999999999999999999999999987654
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=8e-05 Score=67.16 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=33.0
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
|..+||+|| |.+|.++|..++..|. +|.++|+++++++
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~ 45 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVR 45 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhh
Confidence 344699999 9999999999998884 9999999987765
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=4.5e-05 Score=69.10 Aligned_cols=38 Identities=13% Similarity=0.395 Sum_probs=33.6
Q ss_pred CccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
..+||+|| |.||+++|..++..|+ ++.++|+++++++-
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g 49 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKG 49 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHH
Confidence 34799999 9999999999999887 99999999887653
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.1e-05 Score=59.34 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=33.7
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~ 50 (294)
++|+|+ |.||+.++..|++.| ++|+++|+++++++..
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~ 45 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL 45 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence 689999 999999999999999 9999999999887654
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.6e-06 Score=77.54 Aligned_cols=112 Identities=21% Similarity=0.146 Sum_probs=73.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|+.+...|++|++||++++.. + +
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~-------------------------------------- 184 (331)
T 1xdw_A 146 NCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-E-------------------------------------- 184 (331)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-T--------------------------------------
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-H--------------------------------------
Confidence 3689999 9999999999999999999999986431 0 0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.+ .. ..++++.+++||+|+.++|...+.+.-+-++..+.++++++++..
T Consensus 185 ----------------~~--------------~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~ 233 (331)
T 1xdw_A 185 ----------------DY--------------CT-QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNC 233 (331)
T ss_dssp ----------------TT--------------CE-ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEEC
T ss_pred ----------------hc--------------cc-cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEEC
Confidence 00 12 236777889999999999976543222223455568899998743
Q ss_pred CCC--CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TSS--FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tSt--~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
+.+ +....+.+.+. ......+...|.
T Consensus 234 srg~~vd~~aL~~aL~~g~i~gA~LDV~~ 262 (331)
T 1xdw_A 234 ARGQLVDTEAVIEAVESGKLGGYGCDVLD 262 (331)
T ss_dssp SCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred CCcccccHHHHHHHHHhCCceEEEEecCC
Confidence 333 34445666654 222333444443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=4.1e-05 Score=59.73 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=33.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
.++|.|+ |.+|+.++..|...|++|+++|++++.++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~ 44 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNA 44 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 4679999 999999999999999999999999877653
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.94 E-value=5e-05 Score=68.44 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=31.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
+||+|+ |.||.++|..++..|+ +|.++|+++++++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~ 39 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQ 39 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHH
Confidence 489999 9999999999999887 9999999998755
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.93 E-value=3.3e-05 Score=61.14 Aligned_cols=48 Identities=17% Similarity=0.017 Sum_probs=32.6
Q ss_pred eeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCC
Q psy13746 124 SGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL 175 (294)
Q Consensus 124 ~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~ 175 (294)
.+..++.+..+.+|+++.|+|.+ .-.+++.++.+ ...+.++. .+++..
T Consensus 58 ~~~~s~~el~~~vDlvii~vp~~--~v~~v~~~~~~-~g~~~i~~-~~~~~~ 105 (138)
T 1y81_A 58 KCYRSVRELPKDVDVIVFVVPPK--VGLQVAKEAVE-AGFKKLWF-QPGAES 105 (138)
T ss_dssp ECBSSGGGSCTTCCEEEECSCHH--HHHHHHHHHHH-TTCCEEEE-CTTSCC
T ss_pred eecCCHHHhCCCCCEEEEEeCHH--HHHHHHHHHHH-cCCCEEEE-cCccHH
Confidence 45567877777899999999953 34566766655 44566665 456654
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=7.2e-05 Score=67.50 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=29.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
+||+|| |.+|.++|..++..|+ +|.++|+++++++
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~ 46 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAI 46 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHH
Confidence 689999 9999999999999998 9999999987655
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.89 E-value=8.5e-05 Score=70.19 Aligned_cols=37 Identities=16% Similarity=0.041 Sum_probs=29.6
Q ss_pred cceEEE--ccc-cHHHHHHHHHC-----CCeEEEEeCCh--HHHHHH
Q psy13746 14 YPDGII--GLI-GQAWAMIFASA-----GYKVSLYDVLS--EQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~m-G~~iA~~~~~~-----G~~V~~~d~~~--~~~~~~ 50 (294)
+||+|| |.+ |.+++..|+.. +.+|.+||+++ ++++..
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~ 54 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIV 54 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHH
Confidence 689999 666 77777778874 67899999999 887653
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00012 Score=61.87 Aligned_cols=38 Identities=21% Similarity=0.029 Sum_probs=34.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++|.|+ |.+|+.+|..|.+.|++|+++|++++.++...
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~ 40 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFA 40 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 478888 99999999999999999999999999887654
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.5e-05 Score=68.80 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=33.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
-++|+|| |.||+.+|..+...|++|++||+++++.+.
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~ 195 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLAR 195 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 3689999 999999999999999999999999876543
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.3e-05 Score=60.44 Aligned_cols=63 Identities=8% Similarity=-0.002 Sum_probs=39.1
Q ss_pred eeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcC-CCCceee
Q psy13746 124 SGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST-HRSQFIV 191 (294)
Q Consensus 124 ~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~-~~~~~ig 191 (294)
.+..++.+....+|+|+.|+|... -.+++.++.+ ...+.++. .+++.. .++.+.+. +..+++|
T Consensus 59 ~~~~sl~el~~~~Dlvii~vp~~~--v~~v~~~~~~-~g~~~i~i-~~~~~~-~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 59 QGYATLADVPEKVDMVDVFRNSEA--AWGVAQEAIA-IGAKTLWL-QLGVIN-EQAAVLAREAGLSVVM 122 (145)
T ss_dssp ECCSSTTTCSSCCSEEECCSCSTH--HHHHHHHHHH-HTCCEEEC-CTTCCC-HHHHHHHHTTTCEEEC
T ss_pred eccCCHHHcCCCCCEEEEEeCHHH--HHHHHHHHHH-cCCCEEEE-cCChHH-HHHHHHHHHcCCEEEc
Confidence 445677766678999999999643 4566776665 45566665 455554 34444433 4455655
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.82 E-value=6.5e-05 Score=66.86 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=33.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
-++|+|| |.||+.+|..+...|++|++||+++++.+.
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~ 193 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLAR 193 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 3689999 999999999999999999999999876543
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.80 E-value=1.4e-05 Score=75.68 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=50.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 239 RGFALNRIQFAVLNECYHLVHDGVLS-AKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 239 ~g~v~nri~~a~~~Ea~~l~~~~~~~-~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
...+..|++.+++||+.+++++|.++ +.|||.++..|+|||....|||+|+|..|.
T Consensus 355 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~ 411 (460)
T 3k6j_A 355 DQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGL 411 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSS
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCH
Confidence 34588999999999999999999985 999999999999999667799999999884
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00032 Score=55.83 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=33.3
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCC-hHHHHHHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVL-SEQIENAK 51 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~-~~~~~~~~ 51 (294)
.-++|.|+ |.+|+.++..|...|++|+++|++ ++.++...
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~ 44 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLE 44 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHH
Confidence 34688888 999999999999999999999998 45554443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00017 Score=65.10 Aligned_cols=36 Identities=19% Similarity=0.447 Sum_probs=32.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
+||+|| |.+|.+++..++..+. ++.++|+++++++.
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g 45 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKG 45 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHH
Confidence 589999 9999999999998886 89999999887764
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00022 Score=64.13 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=31.8
Q ss_pred cceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~~ 49 (294)
+||+|| |.+|.+++..++..+ .++.++|+++++++.
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g 40 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQA 40 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHH
Confidence 489999 999999999999987 589999999877664
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00044 Score=61.60 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=30.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
+||+|| |.+|+++|..++..|. ++.++|++++..+
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~ 39 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAV 39 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcch
Confidence 589999 9999999999998775 8999999986644
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.65 E-value=8.9e-06 Score=71.14 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=31.9
Q ss_pred ceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIEN 49 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~ 49 (294)
+|+|| |.||++++..|++.|. +|++++|++++.++
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~ 147 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKA 147 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 89999 9999999999999998 99999999887553
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=7e-05 Score=70.05 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=32.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
++|+|+ |.+|+++|..+...|.+|+++|+++.....
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~ 249 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQ 249 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHH
Confidence 689999 999999999999999999999999866543
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00017 Score=68.65 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=31.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
++|+|| |.||+++|..+...|.+|++||+++...
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~ 313 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICA 313 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhH
Confidence 689999 9999999999999999999999998763
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0014 Score=57.41 Aligned_cols=114 Identities=12% Similarity=0.118 Sum_probs=81.0
Q ss_pred CeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcCC-CCceeeeeecCCC--
Q psy13746 122 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH-RSQFIVAHPVNPP-- 198 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~~-~~~~ig~h~~~p~-- 198 (294)
.++.++|-.+|++++|++|.=+|--- .-.++.+++.+++++++||+ +|-|+++..+...+.. ..+-+|...|.|.
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~-~t~~Iakkii~~lpEgAII~-nTCTipp~~ly~~le~l~R~DvgIsS~HPaaV 205 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGN-KQPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGREDLNITSYHPGCV 205 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCT-THHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTTSEEEECBCSSC
T ss_pred CcEeecchHHHhcCCCEEEEecCCCC-CcHHHHHHHHhhCcCCCEEe-cccCCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence 35667777779999999999998743 12467899999999999996 7888887765554431 1223666555554
Q ss_pred -CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 199 -YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 199 -~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
....-. ...-.-.++++++++.++.+..|+.++.++.+-
T Consensus 206 Pgt~Gq~-~~g~~yAtEEqIeklveLaksa~k~ay~vPAdl 245 (358)
T 2b0j_A 206 PEMKGQV-YIAEGYASEEAVNKLYEIGKIARGKAFKMPANL 245 (358)
T ss_dssp TTTCCCE-EEEESSSCHHHHHHHHHHHHHHHSCEEEEEHHH
T ss_pred CCCCCcc-ccccccCCHHHHHHHHHHHHHhCCCeEecchhh
Confidence 222122 233334688999999999999999999996443
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00014 Score=69.05 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=31.9
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
-++|+|| |.||+++|..+...|.+|++||+++...
T Consensus 257 GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~ 293 (479)
T 1v8b_A 257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICA 293 (479)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhH
Confidence 3689999 9999999999999999999999998764
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00032 Score=64.14 Aligned_cols=96 Identities=11% Similarity=0.098 Sum_probs=65.5
Q ss_pred CccceEEE--ccccHHHHHHHHH-C-CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-A-GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++|+|| |.||+.++..++. . ..+|++|||++++.++..+.+..
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~------------------------------- 176 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------------------------------- 176 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT-------------------------------
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh-------------------------------
Confidence 34689999 9999999988764 3 46899999999988766543210
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
..|. .+...++++++++++|+||.|+|... ...++. .+.+++++.|
T Consensus 177 ------------------~~g~------------~~~~~~~~~eav~~aDiVi~aTps~~--~~pvl~--~~~l~~G~~V 222 (350)
T 1x7d_A 177 ------------------YSGL------------TIRRASSVAEAVKGVDIITTVTADKA--YATIIT--PDMLEPGMHL 222 (350)
T ss_dssp ------------------CTTC------------EEEECSSHHHHHTTCSEEEECCCCSS--EEEEEC--GGGCCTTCEE
T ss_pred ------------------ccCc------------eEEEeCCHHHHHhcCCEEEEeccCCC--CCceec--HHHcCCCCEE
Confidence 0010 13445788888999999999999752 001111 2457888887
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
...+|
T Consensus 223 ~~vgs 227 (350)
T 1x7d_A 223 NAVGG 227 (350)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 75544
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00056 Score=61.83 Aligned_cols=32 Identities=34% Similarity=0.542 Sum_probs=29.7
Q ss_pred cceEEE---ccccHHHHHHHHHCC--CeEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAG--YKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G--~~V~~~d~~~~ 45 (294)
+||+|+ |.+|.+++..|+..| ++|.++|++++
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~ 45 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA 45 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 689999 999999999999999 89999999986
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00025 Score=67.70 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=33.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
++|+|+ |.||+.+|+.+...|++|+++|+++++++.+
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A 313 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQA 313 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 689999 9999999999999999999999999886654
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00011 Score=73.61 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHcccCCCcCCCChhhhhcc
Q psy13746 213 SERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVL-SAKDIDRVMSEGLGLRYAFLGPLETIHL 291 (294)
Q Consensus 213 ~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~~~Ea~~l~~~~~~-~~~~id~a~~~g~g~~~~~~Gp~~~~D~ 291 (294)
+++..+.+...-...+...-.+ ...-+..|++.+++||+.+++++|.+ ++.|+|.++..|+|||....|||+|+|.
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~---~~~ei~~R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~ 688 (742)
T 3zwc_A 612 DPWLSTFLSQYREVHHIEQRTI---SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAAS 688 (742)
T ss_dssp CHHHHHHHHHHHHHHTCCCCCC---CHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHH
T ss_pred ChHHHHHHHHHhhhcCCCcCCC---CHHHHHHHHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHH
Confidence 4555554444444333221111 22348899999999999999999987 6999999999999999666799999999
Q ss_pred cC
Q psy13746 292 NS 293 (294)
Q Consensus 292 ~~ 293 (294)
.|
T Consensus 689 ~G 690 (742)
T 3zwc_A 689 VG 690 (742)
T ss_dssp HC
T ss_pred HH
Confidence 87
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00038 Score=62.03 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=33.0
Q ss_pred CCCccceEEE--ccccHH-HHHHHHH-CCCeEE-EEeCChHHHHHHHH
Q psy13746 10 QGGFYPDGII--GLIGQA-WAMIFAS-AGYKVS-LYDVLSEQIENAKN 52 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~-iA~~~~~-~G~~V~-~~d~~~~~~~~~~~ 52 (294)
.|+..||+|| |.||+. ++..+.+ .|+++. ++|+++++.++..+
T Consensus 3 ~M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~ 50 (308)
T 3uuw_A 3 AMKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICS 50 (308)
T ss_dssp --CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHH
T ss_pred ccccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH
Confidence 3566799999 999997 8887876 577776 89999988776543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.53 E-value=6.3e-05 Score=69.37 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=35.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.+|+|| |.||..+|+.+...|.+|+++|+++++++.+.+
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 589999 999999999999999999999999998887654
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0009 Score=60.82 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=33.5
Q ss_pred CCccceEEE--ccccHHHHHHHHHC--CCeEE-EEeCChHHHHHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASA--GYKVS-LYDVLSEQIENAK 51 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~--G~~V~-~~d~~~~~~~~~~ 51 (294)
++..||+|| |.||..++..+.+. ++++. ++|+++++.++..
T Consensus 11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~ 56 (354)
T 3q2i_A 11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAV 56 (354)
T ss_dssp SSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHH
T ss_pred CCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHH
Confidence 345689999 99999999999986 67755 9999998876543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.51 E-value=7e-05 Score=69.57 Aligned_cols=39 Identities=21% Similarity=0.090 Sum_probs=35.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.+|+|+ |.+|..+|+.+...|.+|+++|+++++++.+.+
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS 231 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 488999 999999999999999999999999998877654
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00089 Score=60.18 Aligned_cols=31 Identities=23% Similarity=0.504 Sum_probs=28.5
Q ss_pred cceEEE---ccccHHHHHHHHHCC--CeEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAG--YKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G--~~V~~~d~~~ 44 (294)
+||+|+ |.+|.+++..|+..| .+|.++|+++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~ 36 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 36 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 389999 899999999999988 7999999997
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00058 Score=62.14 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=32.4
Q ss_pred CCCCCccceEEE--ccccH-HHHHHHHHC-CCeEE-EEeCChHHHHHHH
Q psy13746 8 PAQGGFYPDGII--GLIGQ-AWAMIFASA-GYKVS-LYDVLSEQIENAK 51 (294)
Q Consensus 8 ~~~~~~~~i~ii--G~mG~-~iA~~~~~~-G~~V~-~~d~~~~~~~~~~ 51 (294)
|+.|+..||+|| |.||. .++..+.+. |++|. ++|+++++.++..
T Consensus 22 ~~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a 70 (350)
T 3rc1_A 22 PANANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFT 70 (350)
T ss_dssp ----CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHH
T ss_pred CCCCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHH
Confidence 335666789999 99998 788888886 77765 8999998766543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00042 Score=64.72 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=35.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|+.+|..|...|++|+++|.|++.++.+.+
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~ 45 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK 45 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh
Confidence 478888 999999999999999999999999999887653
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=8.1e-05 Score=74.36 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=50.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 239 RGFALNRIQFAVLNECYHLVHDGVL-SAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 239 ~g~v~nri~~a~~~Ea~~l~~~~~~-~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
.+.+.+|++.+++||+.+++++|.+ +++|+|.++..|+|||....|||+|+|..|
T Consensus 624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G 679 (715)
T 1wdk_A 624 DEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIG 679 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhC
Confidence 4568999999999999999999988 899999999999999955569999999887
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.47 E-value=7.6e-05 Score=74.64 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=49.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 239 RGFALNRIQFAVLNECYHLVHDGVL-SAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 239 ~g~v~nri~~a~~~Ea~~l~~~~~~-~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
.+.+.+|++.+++||+.+++++|.+ +++|+|.++..|+|||....|||+|+|..|
T Consensus 624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G 679 (725)
T 2wtb_A 624 EKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIG 679 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhC
Confidence 3468899999999999999999988 899999999999999955569999999887
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00047 Score=58.77 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=32.3
Q ss_pred CCCCCCCCCccceEEE---ccccHHHHHHHHHCC-CeEEEEeCChHHH
Q psy13746 4 VASFPAQGGFYPDGII---GLIGQAWAMIFASAG-YKVSLYDVLSEQI 47 (294)
Q Consensus 4 ~~~~~~~~~~~~i~ii---G~mG~~iA~~~~~~G-~~V~~~d~~~~~~ 47 (294)
..+...+|.+++|.|. |.+|+.++..|++.| ++|++++|+++.+
T Consensus 14 ~~~~~~~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~ 61 (236)
T 3qvo_A 14 RENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI 61 (236)
T ss_dssp --------CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS
T ss_pred ccceeecCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh
Confidence 3344457777788777 899999999999999 8999999998764
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=6.1e-05 Score=69.56 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=35.3
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
-++|+|+ |.+|+.+|+.+...|.+|+++|+++++++.+.+
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~ 209 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDA 209 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 3689999 999999999999999999999999988776543
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00015 Score=65.87 Aligned_cols=110 Identities=25% Similarity=0.222 Sum_probs=74.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|||| |.+|+.+|..+...|.+|..||+.+.... .+
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~--~~--------------------------------------- 180 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDL--KE--------------------------------------- 180 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH--HH---------------------------------------
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchhh--hh---------------------------------------
Confidence 589999 99999999999999999999998754311 00
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.| .. ..++++.++.||+|+.++|-..+-+.-+=++....++++++++ |+
T Consensus 181 ---------------~~--------------~~-~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lI-N~ 229 (334)
T 3kb6_A 181 ---------------KG--------------CV-YTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLI-NT 229 (334)
T ss_dssp ---------------TT--------------CE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEE-EC
T ss_pred ---------------cC--------------ce-ecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEE-ec
Confidence 11 11 3578888999999999999876533222234445688999987 77
Q ss_pred CC---CCHHHHHhhcCC-CCceeeeeec
Q psy13746 172 SS---FLPSVLSEHSTH-RSQFIVAHPV 195 (294)
Q Consensus 172 St---~~~~~ia~~l~~-~~~~ig~h~~ 195 (294)
|- +.-+.+.+.+.. .....+...|
T Consensus 230 aRG~iVde~aL~~aL~~g~i~gA~LDV~ 257 (334)
T 3kb6_A 230 ARGKVVDTDALYRAYQRGKFSGLGLDVF 257 (334)
T ss_dssp SCGGGBCHHHHHHHHHTTCEEEEEESCC
T ss_pred CccccccHHHHHHHHHhCCceEEEEeCC
Confidence 73 444566666652 2233344444
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00037 Score=65.27 Aligned_cols=35 Identities=23% Similarity=0.160 Sum_probs=31.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~ 48 (294)
++|+|+ |.+|+.+|..+...|.+|+++|+++....
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~ 284 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICAL 284 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhh
Confidence 678899 99999999999999999999999986543
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00048 Score=62.16 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=64.5
Q ss_pred CccceEEE--ccccHHHHHHHHH-C-CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-A-GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++|+|| |.||+.++..++. . ..+|.+|||++++.++..+.+.
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~-------------------------------- 171 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCE-------------------------------- 171 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHH--------------------------------
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHH--------------------------------
Confidence 34689999 9999999999887 3 4689999999998876654321
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
..+ + .+. .+++++++ ++|+|+.|+|.... ++. .+.+++++.|
T Consensus 172 ------------------~~~-~-----------~~~-~~~~~e~v-~aDvVi~aTp~~~p----v~~--~~~l~~G~~V 213 (322)
T 1omo_A 172 ------------------DRG-I-----------SAS-VQPAEEAS-RCDVLVTTTPSRKP----VVK--AEWVEEGTHI 213 (322)
T ss_dssp ------------------HTT-C-----------CEE-ECCHHHHT-SSSEEEECCCCSSC----CBC--GGGCCTTCEE
T ss_pred ------------------hcC-c-----------eEE-ECCHHHHh-CCCEEEEeeCCCCc----eec--HHHcCCCeEE
Confidence 001 0 134 56888889 99999999997532 221 2457788887
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
.+.++
T Consensus 214 ~~ig~ 218 (322)
T 1omo_A 214 NAIGA 218 (322)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 75533
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0012 Score=59.81 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=31.4
Q ss_pred cceEEE--ccccHHHHHHHHHC-CCeEE-EEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASA-GYKVS-LYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~-G~~V~-~~d~~~~~~~~~ 50 (294)
.||+|| |.||..++..+.+. +++|+ ++|+++++.++.
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~ 45 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRL 45 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHH
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHH
Confidence 589999 99999999999885 67766 899999886654
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00035 Score=62.83 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=63.4
Q ss_pred CccceEEE--ccccHHHHHHHHH-C-CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-A-GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |.||+.++..++. . ..+|.+|||+ +.++..+.+.
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~-------------------------------- 165 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIG-------------------------------- 165 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHH--------------------------------
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHH--------------------------------
Confidence 45789999 9999999999886 3 4689999999 4333322211
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+. .|. .+... ++++++++||+||.|+|... .++. .++++++++|
T Consensus 166 -----------~~------~g~------------~~~~~-~~~eav~~aDIVi~aT~s~~----pvl~--~~~l~~G~~V 209 (313)
T 3hdj_A 166 -----------RR------CGV------------PARMA-APADIAAQADIVVTATRSTT----PLFA--GQALRAGAFV 209 (313)
T ss_dssp -----------HH------HTS------------CEEEC-CHHHHHHHCSEEEECCCCSS----CSSC--GGGCCTTCEE
T ss_pred -----------Hh------cCC------------eEEEe-CHHHHHhhCCEEEEccCCCC----cccC--HHHcCCCcEE
Confidence 00 021 13445 88889999999999998753 2222 3568899998
Q ss_pred EecCCC
Q psy13746 168 SSSTSS 173 (294)
Q Consensus 168 ~s~tSt 173 (294)
.+.+|.
T Consensus 210 ~~vGs~ 215 (313)
T 3hdj_A 210 GAIGSS 215 (313)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 876653
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00016 Score=66.50 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=34.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++|+|+ |.+|+.+|+.++..|++|+++|+++++++.+.
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~ 206 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLD 206 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 678888 99999999999999999999999998876554
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00065 Score=59.89 Aligned_cols=77 Identities=16% Similarity=0.100 Sum_probs=51.9
Q ss_pred CCCCCCCCc---cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCC
Q psy13746 5 ASFPAQGGF---YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAG 77 (294)
Q Consensus 5 ~~~~~~~~~---~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (294)
.-|...|+- .||++| +-+|+++|..|++.|.+|.+.||+++.++++.+.+. ..
T Consensus 17 n~~~~~Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g--------------------~~ 76 (273)
T 4fgs_A 17 NLYFQSMTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG--------------------GG 76 (273)
T ss_dssp --------CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--------------------TT
T ss_pred ccchhhhcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--------------------CC
Confidence 445556653 389999 569999999999999999999999999887765542 11
Q ss_pred ceeEEeecch-HHHHHHHHHHHHHH
Q psy13746 78 YKVSLYDVLS-EQIENAKNTIQHTL 101 (294)
Q Consensus 78 ~~v~~~d~~~-~~~~~~~~~~~~~l 101 (294)
...+..|+.+ +.+++..+.+.+.+
T Consensus 77 ~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 77 AVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHc
Confidence 2344567777 66776666665555
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00097 Score=60.09 Aligned_cols=41 Identities=12% Similarity=0.019 Sum_probs=33.1
Q ss_pred CCccceEEE--ccccHHHHHHHHHC-CCeEE-EEeCChHHHHHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAK 51 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~-G~~V~-~~d~~~~~~~~~~ 51 (294)
|+..||+|| |.||..++..+.+. +++|. ++|+++++.++..
T Consensus 3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~ 47 (330)
T 3e9m_A 3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMA 47 (330)
T ss_dssp CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHH
T ss_pred CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHH
Confidence 344689999 99999999999984 67766 8999998866543
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00026 Score=63.23 Aligned_cols=40 Identities=13% Similarity=-0.006 Sum_probs=34.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
-++|+|+ |.||+++|..|+..|+ +|++++|++++.++..+
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~ 183 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVR 183 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHH
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 3688899 9999999999999998 99999999988765543
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0016 Score=58.85 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=27.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCC-------eEEEEeCC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY-------KVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~ 43 (294)
+||+|+ |.+|++++..++..|+ +|.++|++
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~ 45 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP 45 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence 689999 8999999999999885 89999999
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0013 Score=59.68 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.8
Q ss_pred cceEEE--ccccHHHHHHHHHC-CCeEE-EEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~-G~~V~-~~d~~~~~~~~~~ 51 (294)
.||+|| |.||..++..+.+. |++|. ++|+++++.++..
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~ 47 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFG 47 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHH
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH
Confidence 589999 99999999999886 78854 8999998876543
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0017 Score=59.19 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=33.8
Q ss_pred CCCCCCCCCCCccceEEE--ccccHHHHHHHH-H-CCCeEE-EEeCChHHHHHHHH
Q psy13746 2 SNVASFPAQGGFYPDGII--GLIGQAWAMIFA-S-AGYKVS-LYDVLSEQIENAKN 52 (294)
Q Consensus 2 ~~~~~~~~~~~~~~i~ii--G~mG~~iA~~~~-~-~G~~V~-~~d~~~~~~~~~~~ 52 (294)
+|...-+.+|...||+|| |.||+.++..+. . .|++|. ++|+++++.++..+
T Consensus 12 ~~~~~~~~~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~ 67 (357)
T 3ec7_A 12 SGRENLYFQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALD 67 (357)
T ss_dssp ----------CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHH
T ss_pred CCccccccCCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHH
Confidence 344455668877899999 999999999998 4 477765 89999988765443
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0012 Score=55.43 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=30.7
Q ss_pred cceEEE---ccccHHHHHHHH-HCCCeEEEEeCChH-HHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFA-SAGYKVSLYDVLSE-QIEN 49 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~-~~G~~V~~~d~~~~-~~~~ 49 (294)
++|.|. |.+|+.++..|+ +.|++|++++|+++ .++.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~ 46 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPP 46 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCH
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchh
Confidence 447677 899999999999 89999999999987 5543
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00052 Score=58.90 Aligned_cols=30 Identities=30% Similarity=0.545 Sum_probs=27.6
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeE-EEEeCCh
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKV-SLYDVLS 44 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V-~~~d~~~ 44 (294)
||+|| |.||+.++..+...|++| .+||+++
T Consensus 2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~ 34 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG 34 (236)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc
Confidence 79999 999999999999999997 7999884
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=4.1e-05 Score=67.76 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=31.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~ 48 (294)
+++.|+ |.||++++..|++.|. +|++++|++++.+
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~ 155 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFN 155 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence 578888 9999999999999998 9999999987644
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.001 Score=62.08 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=31.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~ 48 (294)
++|+|+ |.+|+.+|..+...|.+|+++|+++....
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~ 257 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICAL 257 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhH
Confidence 688899 99999999999999999999999986544
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0019 Score=58.02 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=31.9
Q ss_pred cceEEE--ccccHHHHHHHHHC-CCeEE-EEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~-G~~V~-~~d~~~~~~~~~~ 51 (294)
.||+|| |.||..++..+.+. +++|. ++|+++++.++..
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~ 45 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIA 45 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHH
Confidence 589999 99999999999885 77866 8999998866543
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.003 Score=57.45 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCCCCCccceEEE---ccccHHHHHHHHHCCC-------eEEEEeCChH
Q psy13746 7 FPAQGGFYPDGII---GLIGQAWAMIFASAGY-------KVSLYDVLSE 45 (294)
Q Consensus 7 ~~~~~~~~~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~~~ 45 (294)
.|..|+--||+|+ |.+|.+++..++.... ++.++|+++.
T Consensus 18 ~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~ 66 (345)
T 4h7p_A 18 GPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPA 66 (345)
T ss_dssp ----CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGG
T ss_pred CCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCc
Confidence 4555666699999 8999999999998643 7999999864
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0026 Score=56.73 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=29.9
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeC--ChHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDV--LSEQIE 48 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~--~~~~~~ 48 (294)
+||+|+ |.+|.+++..++..|+ ++.++|+ ++++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~ 42 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTV 42 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHH
Confidence 489999 9999999999998886 7999999 776544
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0013 Score=61.26 Aligned_cols=149 Identities=15% Similarity=0.172 Sum_probs=92.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.-|.+-|.+|...|.+|++--|.....+..
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~----------------------------------------- 76 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR----------------------------------------- 76 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTC-----------------------------------------
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCccccc-----------------------------------------
Confidence 789999 9999999999999999999887743321110
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
+.+++..+.| +++ .++.+|++.||+|+.-+|+..+ .+++++|.++++++..+.. +
T Consensus 77 -------~S~~~A~~~G--------------f~v-~~~~eA~~~ADvV~~L~PD~~q--~~vy~~I~p~lk~G~~L~f-a 131 (491)
T 3ulk_A 77 -------ASWRKATENG--------------FKV-GTYEELIPQADLVINLTPDKQH--SDVVRTVQPLMKDGAALGY-S 131 (491)
T ss_dssp -------HHHHHHHHTT--------------CEE-EEHHHHGGGCSEEEECSCGGGH--HHHHHHHGGGSCTTCEEEE-S
T ss_pred -------chHHHHHHCC--------------CEe-cCHHHHHHhCCEEEEeCChhhH--HHHHHHHHhhCCCCCEEEe-c
Confidence 1122222233 333 3678899999999999999764 4778999999999998864 4
Q ss_pred CCCCHHHHHhhcCCC--CceeeeeecCCCC----------CCC-eEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy13746 172 SSFLPSVLSEHSTHR--SQFIVAHPVNPPY----------FIP-LVEIVPAAWTSERVITRTREIMTEIGMK 230 (294)
Q Consensus 172 St~~~~~ia~~l~~~--~~~ig~h~~~p~~----------~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~ 230 (294)
.+..+.. .....| ..++-+-|-.|-+ ..+ ++-+-+....+....+.+..+...+|..
T Consensus 132 HGFnI~~--~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~liAVhqeqD~sG~a~~~AlayA~aiG~~ 201 (491)
T 3ulk_A 132 HGFNIVE--VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGH 201 (491)
T ss_dssp SCHHHHT--TCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEEEECGGGCTTSCHHHHHHHHHHHHTGG
T ss_pred Ccccccc--cccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEEEEEeCCCCchhHHHHHHHHHHhcCCC
Confidence 5553321 222222 2233333433311 112 3323211123445667788888999963
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0014 Score=58.53 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCCCCccceEEE--ccccHHHHHHHHHC-CCe-EEEEeCChHHHH
Q psy13746 8 PAQGGFYPDGII--GLIGQAWAMIFASA-GYK-VSLYDVLSEQIE 48 (294)
Q Consensus 8 ~~~~~~~~i~ii--G~mG~~iA~~~~~~-G~~-V~~~d~~~~~~~ 48 (294)
|+.++..+|+|| |.||+.++..+.+. +++ |.++|+++++.+
T Consensus 5 p~~~~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~ 49 (315)
T 3c1a_A 5 PANNSPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLA 49 (315)
T ss_dssp ----CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHT
T ss_pred CCCCCcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHH
Confidence 444455689999 99999999999885 676 459999987644
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0038 Score=56.29 Aligned_cols=39 Identities=31% Similarity=0.318 Sum_probs=31.5
Q ss_pred CccceEEE--ccccHHHHHHHH-H-CCCe-EEEEeCChHHHHHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFA-S-AGYK-VSLYDVLSEQIENA 50 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~-~-~G~~-V~~~d~~~~~~~~~ 50 (294)
+..+|+|| |.||..++..+. + .|++ |.++|+++++++..
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~ 50 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWA 50 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHH
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHH
Confidence 34689999 999999999988 5 4777 56899999886643
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0015 Score=59.74 Aligned_cols=37 Identities=32% Similarity=0.367 Sum_probs=31.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
+||.|+ |.+|+.+|..|++ .++|+++|++.+.++++.
T Consensus 17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~ 55 (365)
T 3abi_A 17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK 55 (365)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT
T ss_pred cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh
Confidence 589999 9999999988865 589999999998887653
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0023 Score=55.50 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=52.1
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.|+++| | -+|+++|..|++.|++|.+.+|+++.++++.+.+.+. .......+-.|+.+
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dv~~ 69 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQL----------------NQPEAHLYQIDVQS 69 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGG----------------TCSSCEEEECCTTC
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------CCCcEEEEEccCCC
Confidence 478888 6 5999999999999999999999999888877665421 01123445567776
Q ss_pred -HHHHHHHHHHHHHH
Q psy13746 88 -EQIENAKNTIQHTL 101 (294)
Q Consensus 88 -~~~~~~~~~~~~~l 101 (294)
+++++..+++.+.+
T Consensus 70 ~~~v~~~~~~~~~~~ 84 (256)
T 4fs3_A 70 DEEVINGFEQIGKDV 84 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 56666666655555
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0015 Score=55.74 Aligned_cols=36 Identities=6% Similarity=-0.224 Sum_probs=32.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
++|.|+ |.+|+.+|..|...|+ |+++|++++.++.+
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~ 47 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVL 47 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHH
Confidence 578888 9999999999999999 99999999887654
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0012 Score=57.15 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=27.5
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEE-EEeCChH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVS-LYDVLSE 45 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~-~~d~~~~ 45 (294)
|++.||+|+ |.||+.++..+...++++. ++|++++
T Consensus 1 M~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~ 38 (243)
T 3qy9_A 1 MASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPK 38 (243)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC
T ss_pred CCceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCcc
Confidence 456799999 9999999999998877654 4788764
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0024 Score=55.98 Aligned_cols=78 Identities=18% Similarity=0.100 Sum_probs=50.1
Q ss_pred CCCCCCccceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEE
Q psy13746 7 FPAQGGFYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSL 82 (294)
Q Consensus 7 ~~~~~~~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (294)
.+.+|...|+++| |-+|+.+|..|++.|++|++.+++++.+++..+.+.. ....+....
T Consensus 17 ~~~~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~ 79 (279)
T 3sju_A 17 RGSHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRA-----------------AGHDVDGSS 79 (279)
T ss_dssp --------CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-----------------TTCCEEEEE
T ss_pred CcccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEE
Confidence 4456666677777 7899999999999999999999999988877665541 012244555
Q ss_pred eecch-HHHHHHHHHHHHHH
Q psy13746 83 YDVLS-EQIENAKNTIQHTL 101 (294)
Q Consensus 83 ~d~~~-~~~~~~~~~~~~~l 101 (294)
.|+.+ +.+++..+.+.+.+
T Consensus 80 ~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 80 CDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp CCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 67776 45555555544433
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00066 Score=60.08 Aligned_cols=40 Identities=8% Similarity=-0.053 Sum_probs=34.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|+ |.+|++++..|+..|. +|++++|++++.++..+.
T Consensus 127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~ 169 (281)
T 3o8q_A 127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAEL 169 (281)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHH
Confidence 678888 9999999999999996 999999999887765543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0022 Score=53.60 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=31.3
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
||.|. |.+|+.++..|++.|++|++++|+++.+..
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~ 39 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD 39 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence 67777 999999999999999999999999887653
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0016 Score=57.69 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=35.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i 54 (294)
+++.|+ |.+|++++..|+..|. +|++++|++++.++..+.+
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~ 171 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI 171 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 577788 9999999999999998 7999999999887665543
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0046 Score=55.17 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=30.8
Q ss_pred CCccceEEE--ccccHH-HHHHHHH-CCCeEE-EEeCChHHHHHH
Q psy13746 11 GGFYPDGII--GLIGQA-WAMIFAS-AGYKVS-LYDVLSEQIENA 50 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~-iA~~~~~-~G~~V~-~~d~~~~~~~~~ 50 (294)
|+..+|+|| |.||+. ++..+.+ .|+++. ++|+++++.+..
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~ 47 (319)
T 1tlt_A 3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPI 47 (319)
T ss_dssp --CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHH
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHH
Confidence 445689999 999997 8888876 477866 999999886654
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0046 Score=55.83 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=31.3
Q ss_pred cceEEE--ccccHHHHHHHHHC-CCeEE-EEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~-G~~V~-~~d~~~~~~~~~~ 51 (294)
.||+|| |.||..++..+.+. ++++. ++|+++++.++..
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~ 44 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMK 44 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH
Confidence 589999 99999999998874 67765 8999998876544
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0077 Score=50.89 Aligned_cols=39 Identities=10% Similarity=-0.084 Sum_probs=33.1
Q ss_pred CccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 12 GFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 12 ~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
+-++|.|. |.+|+.++..|++.|++|++++|+++.++..
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~ 61 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPEL 61 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHH
Confidence 34577777 9999999999999999999999999886653
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0039 Score=51.82 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=31.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
+||.|. |.+|+.++..|++.|++|++++|+++.++.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~ 39 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ 39 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh
Confidence 367777 899999999999999999999999877553
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0044 Score=48.86 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=26.7
Q ss_pred cceEEE------ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII------GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii------G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++|+|| |.+|..++..+.+.||+ +|++||.+
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~ 50 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRF 50 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGG
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCc
Confidence 579999 57999999999999997 78888863
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0015 Score=60.76 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=32.9
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIEN 49 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~ 49 (294)
-++|+|+ |.||+.++..+...|. +|+++|+++++.+.
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~ 206 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVE 206 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHH
T ss_pred CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 3689999 9999999999999998 99999999987643
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0012 Score=62.27 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=33.7
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
|+.++|.|+ |.+|+.+|..|+..|++|+++||++++++.
T Consensus 1 M~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~ 41 (450)
T 1ff9_A 1 MATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK 41 (450)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHH
Confidence 445789999 999999999999999999999999877654
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0061 Score=51.93 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=36.0
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+.
T Consensus 14 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 59 (247)
T 3i1j_A 14 GRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIK 59 (247)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHH
Confidence 355566 899999999999999999999999999888776654
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0013 Score=60.27 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=35.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|+.+++.++..|.+|+++|+++++++.+.+
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~ 208 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLET 208 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 688888 999999999999999999999999998876644
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0081 Score=53.75 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=29.7
Q ss_pred ceEEE--ccccHHH-HHHHHHCCCeEE-EEeCChHHHHHH
Q psy13746 15 PDGII--GLIGQAW-AMIFASAGYKVS-LYDVLSEQIENA 50 (294)
Q Consensus 15 ~i~ii--G~mG~~i-A~~~~~~G~~V~-~~d~~~~~~~~~ 50 (294)
+|+|| |.||+.+ +..+.+.|++|. ++|+++++.++.
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~ 41 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAY 41 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHH
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHH
Confidence 79999 9999998 777777788765 899999886654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0044 Score=52.83 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=45.6
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
|.+|+.+|..|++.|++|++.+|+++.+++..+.+. .++..+..|+.+ +.+++..+.+.
T Consensus 13 ~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~D~~~~~~v~~~~~~~~ 72 (235)
T 3l6e_A 13 SGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG--------------------NAVIGIVADLAHHEDVDVAFAAAV 72 (235)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--------------------GGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--------------------CCceEEECCCCCHHHHHHHHHHHH
Confidence 889999999999999999999999998887665432 135566678776 55655555544
Q ss_pred HH
Q psy13746 99 HT 100 (294)
Q Consensus 99 ~~ 100 (294)
+.
T Consensus 73 ~~ 74 (235)
T 3l6e_A 73 EW 74 (235)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0019 Score=60.09 Aligned_cols=38 Identities=26% Similarity=0.184 Sum_probs=34.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
.+|+|+ |.+|..++..+...|.+|+++|+++++++.++
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~ 212 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 212 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 578999 99999999999999999999999999877653
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0029 Score=54.88 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=48.5
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
+|+++| +-+|+++|..|++.|++|.+.|++++.+++..+.. .....+..|+.+ +
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---------------------~~~~~~~~Dv~~~~ 60 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKER---------------------PNLFYFHGDVADPL 60 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTC---------------------TTEEEEECCTTSHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---------------------CCEEEEEecCCCHH
Confidence 466777 77999999999999999999999998876544321 123445667777 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
++++..+.+.+.+
T Consensus 61 ~v~~~v~~~~~~~ 73 (247)
T 3ged_A 61 TLKKFVEYAMEKL 73 (247)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655555
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0016 Score=54.64 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=31.2
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
+++|.|. |.+|+.++..|++.|++|++.+|+++..
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 41 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI 41 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence 3678888 9999999999999999999999998653
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0049 Score=53.60 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=52.7
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCce--eEEeecch
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK--VSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~d~~~ 87 (294)
.|+++| +-+|+++|..|++.|.+|.++|++++.+++..+.+.. .|.+ .+..|+.+
T Consensus 7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~-------------------~g~~~~~~~~Dvt~ 67 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG-------------------MGKEVLGVKADVSK 67 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------------------TTCCEEEEECCTTS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-------------------cCCcEEEEEccCCC
Confidence 478888 6799999999999999999999999999988877652 1333 34567766
Q ss_pred -HHHHHHHHHHHHHH
Q psy13746 88 -EQIENAKNTIQHTL 101 (294)
Q Consensus 88 -~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 68 ~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 68 KKDVEEFVRRTFETY 82 (254)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 56666666665555
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0047 Score=53.78 Aligned_cols=71 Identities=21% Similarity=0.166 Sum_probs=50.1
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+... ...+..+.+|+.+ +
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-----------------~~~~~~~~~Dv~d~~ 66 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA-----------------GGTALAQVLDVTDRH 66 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT-----------------TCEEEEEECCTTCHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------CCcEEEEEcCCCCHH
Confidence 466777 78999999999999999999999999988877665410 1123344567776 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 67 ~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 67 SVAAFAQAAVDTW 79 (264)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5655555544433
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0053 Score=52.81 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=47.5
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |-+|+.+|..|++.|++|++.+|+++.+++..+.+. ..+..+..|+.+ +.
T Consensus 10 k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~D~~~~~~ 69 (261)
T 3n74_A 10 KVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIG--------------------DAALAVAADISKEAD 69 (261)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--------------------TTEEEEECCTTSHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC--------------------CceEEEEecCCCHHH
Confidence 45555 789999999999999999999999998887665432 124556677776 44
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
+++..+.+.+.+
T Consensus 70 ~~~~~~~~~~~~ 81 (261)
T 3n74_A 70 VDAAVEAALSKF 81 (261)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 555555444433
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.01 Score=55.32 Aligned_cols=22 Identities=9% Similarity=0.076 Sum_probs=18.7
Q ss_pred CeeeccChhhhccCCcEEEEcC
Q psy13746 122 LISGTPVLRECLEDAIFIQESV 143 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieav 143 (294)
+++.++|+.+++++||+||.+.
T Consensus 60 ~v~~t~d~~~al~~AD~Viita 81 (417)
T 1up7_A 60 KVLISDTFEGAVVDAKYVIFQF 81 (417)
T ss_dssp EEEECSSHHHHHTTCSEEEECC
T ss_pred EEEEeCCHHHHhCCCCEEEEcC
Confidence 3666789877899999999998
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0025 Score=55.88 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=34.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+++.|+ |.||+++|..|++.|.+|++++|++++.++..+
T Consensus 120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~ 160 (272)
T 1p77_A 120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAE 160 (272)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 678888 899999999999999999999999988776544
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0076 Score=54.86 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=31.2
Q ss_pred CCccceEEE--ccccHHHHHHHHHC-CCeEE-EEeCChHHHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASA-GYKVS-LYDVLSEQIEN 49 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~-G~~V~-~~d~~~~~~~~ 49 (294)
|+..+|+|| |.||...+..+.+. +++|. ++|+++++.+.
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~ 45 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREA 45 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHH
T ss_pred CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHH
Confidence 444689999 99999999988876 67765 78999987653
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.012 Score=46.57 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=25.5
Q ss_pred cceEEE------ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII------GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii------G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
++|+|| |.+|..++..|.+.||+ +|++++.
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~ 58 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPK 58 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTT
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCC
Confidence 579999 47999999999999997 6777775
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.004 Score=58.90 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=36.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
.|||.|+ |.+|+.+|..|...||+|++.|.+++.++++.+.
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~ 45 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDK 45 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHh
Confidence 3688888 9999999999999999999999999998876653
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.002 Score=56.59 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=34.4
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
-+++.|+ |.||++++..|++.|.+|++++|++++.++..
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la 158 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ 158 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3688899 99999999999999999999999998876543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0073 Score=52.75 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=49.4
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |.+|+.+|..|++.|++|++.|++++.+++..+.+... ......+..+..|+.+ +.
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~~~~~Dv~~~~~ 77 (281)
T 3svt_A 12 RTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEAL--------------GANGGAIRYEPTDITNEDE 77 (281)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--------------CCSSCEEEEEECCTTSHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--------------CCCCceEEEEeCCCCCHHH
Confidence 55666 88999999999999999999999999988776665410 0001124445567776 45
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
+++..+.+.+.+
T Consensus 78 v~~~~~~~~~~~ 89 (281)
T 3svt_A 78 TARAVDAVTAWH 89 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 555555544433
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0061 Score=52.59 Aligned_cols=71 Identities=24% Similarity=0.262 Sum_probs=50.0
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |-+|+++|..|++.|++|++.+|+++.+++..+.+.. ....+..+..|+.+ +
T Consensus 6 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~~~~ 68 (257)
T 3imf_A 6 EKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ-----------------FPGQILTVQMDVRNTD 68 (257)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----------------STTCEEEEECCTTCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEccCCCHH
Confidence 355666 7899999999999999999999999998877665431 01124455667776 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 69 ~v~~~~~~~~~~~ 81 (257)
T 3imf_A 69 DIQKMIEQIDEKF 81 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5666555554443
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0076 Score=52.90 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=51.5
Q ss_pred CCCCccceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEee
Q psy13746 9 AQGGFYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYD 84 (294)
Q Consensus 9 ~~~~~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 84 (294)
..+.-.|+++| |.+|+.+|..|++.|++|++.+|+++.++++.+.+... ....+..+.+|
T Consensus 7 ~~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~D 70 (311)
T 3o26_A 7 NTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS----------------NHENVVFHQLD 70 (311)
T ss_dssp -----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------TCCSEEEEECC
T ss_pred CccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------CCCceEEEEcc
Confidence 33444577777 78999999999999999999999999988776665410 11235566678
Q ss_pred cch--HHHHHHHHHHHHHH
Q psy13746 85 VLS--EQIENAKNTIQHTL 101 (294)
Q Consensus 85 ~~~--~~~~~~~~~~~~~l 101 (294)
+.+ +.++...+.+.+.+
T Consensus 71 l~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 71 VTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhC
Confidence 776 45555555544433
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0068 Score=51.89 Aligned_cols=41 Identities=37% Similarity=0.463 Sum_probs=35.2
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|+++| |.+|+.+|..|++.|++|++.|++++.+++..+.+.
T Consensus 10 k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 54 (253)
T 3qiv_A 10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIV 54 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 55555 889999999999999999999999999887766554
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.008 Score=49.21 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=30.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++|.|. |.+|+.++..|++.|++|++++|+++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~ 39 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSR 39 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhh
Confidence 578777 999999999999999999999999865
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0063 Score=54.70 Aligned_cols=41 Identities=10% Similarity=-0.023 Sum_probs=30.8
Q ss_pred CCccceEEE--ccccH-HHHHHHHHCCCeE-EEEeCChHHHHHHH
Q psy13746 11 GGFYPDGII--GLIGQ-AWAMIFASAGYKV-SLYDVLSEQIENAK 51 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~-~iA~~~~~~G~~V-~~~d~~~~~~~~~~ 51 (294)
|+..||+|| |.+|. .++..+...|++| .++|+++++.+...
T Consensus 2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a 46 (336)
T 2p2s_A 2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFT 46 (336)
T ss_dssp --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHH
T ss_pred CCccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHH
Confidence 455689999 88986 6777777788985 69999998876543
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0018 Score=57.06 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=27.5
Q ss_pred CCCCCccceEEE---ccccHHHHHHHHH-CCCeEE-EEeCChH
Q psy13746 8 PAQGGFYPDGII---GLIGQAWAMIFAS-AGYKVS-LYDVLSE 45 (294)
Q Consensus 8 ~~~~~~~~i~ii---G~mG~~iA~~~~~-~G~~V~-~~d~~~~ 45 (294)
|..|++.||+|+ |.||+.++..+.. .++++. ++|+++.
T Consensus 2 ~~~M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~ 44 (272)
T 4f3y_A 2 PGSMSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGS 44 (272)
T ss_dssp ----CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTC
T ss_pred CCCccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCc
Confidence 445777899999 9999999998886 467765 4788753
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0042 Score=58.87 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=32.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
++++|+ |.+|+++|..|+..|.+|+++|+++....++
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~A 304 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQA 304 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 466666 9999999999999999999999998776544
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0052 Score=53.96 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=33.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~ 51 (294)
+++.|| |.||++++..|+..|. +|++++|++++.++..
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la 160 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLA 160 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence 588899 9999999999999997 8999999998866543
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.011 Score=53.12 Aligned_cols=35 Identities=20% Similarity=-0.035 Sum_probs=29.2
Q ss_pred CCCccceEEE---ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 10 QGGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 10 ~~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
.|..++|.|. |.+|+.++..|++.|++|++++|++
T Consensus 7 ~M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 7 PSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp ----CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4666789888 9999999999999999999999987
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0034 Score=59.49 Aligned_cols=40 Identities=10% Similarity=-0.041 Sum_probs=33.6
Q ss_pred CCccceEEE--ccccHHHHHHHHHC-CCeEEEEeCChHHHHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASA-GYKVSLYDVLSEQIENA 50 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~-G~~V~~~d~~~~~~~~~ 50 (294)
...++|.|+ |.+|+.++..|++. |++|++++|++++++..
T Consensus 21 l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~l 63 (467)
T 2axq_A 21 HMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL 63 (467)
T ss_dssp --CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred CCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence 345789999 99999999999997 78999999999887654
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0022 Score=59.20 Aligned_cols=39 Identities=18% Similarity=0.082 Sum_probs=34.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.+|+|+ |.+|...+..+...|.+|+++|+++++++.+++
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 588999 999999999999999999999999988776543
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.013 Score=52.80 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=31.2
Q ss_pred cceEEE--ccccHHHHHHHH-H-CCCeEE-EEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFA-S-AGYKVS-LYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~-~-~G~~V~-~~d~~~~~~~~~~ 51 (294)
.||+|| |.||..++..+. . .|+++. ++|+++++.++..
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~ 45 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVV 45 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHH
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHH
Confidence 489999 999999999998 4 477765 8999998876543
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0075 Score=52.75 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=34.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+++.|+ |.||+++|..|+..|.+|++++|++++++...+
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~ 160 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK 160 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 578888 899999999999999999999999988765543
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.013 Score=52.39 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=30.9
Q ss_pred cceEEE--ccccHH-HHHHHHHC-CCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQA-WAMIFASA-GYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~-iA~~~~~~-G~~V~~~d~~~~~~~~~~ 51 (294)
.+|+|| |.||+. ++..+.+. +++|.++|+++++.++..
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a 44 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLA 44 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 589999 999984 88888764 778889999998876543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.01 Score=50.86 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=34.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.++...+.+.
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 52 (247)
T 2jah_A 8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELT 52 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 44555 889999999999999999999999988877665543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.01 Score=51.27 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=51.2
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+... ....+..+..|+.+ +
T Consensus 10 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~Dv~~~~ 73 (262)
T 3pk0_A 10 GRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQL----------------GSGKVIGVQTDVSDRA 73 (262)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------SSSCEEEEECCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh----------------CCCcEEEEEcCCCCHH
Confidence 366677 78999999999999999999999999988776655410 01234556677777 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 74 ~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 74 QCDALAGRAVEEF 86 (262)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666555554444
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0078 Score=52.12 Aligned_cols=42 Identities=19% Similarity=0.193 Sum_probs=35.8
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.|+++| |-+|+.+|..|++.|++|++.+++++.+++..+.+.
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 56 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVT 56 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHH
Confidence 356666 789999999999999999999999999888776654
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0065 Score=53.33 Aligned_cols=32 Identities=25% Similarity=0.033 Sum_probs=29.2
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
+++|.|. |.+|+.++..|++.|++|++.+|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence 4678888 9999999999999999999999984
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0097 Score=51.49 Aligned_cols=70 Identities=30% Similarity=0.309 Sum_probs=47.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+.... ....+..+..|+.+ +.
T Consensus 14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~~~D~~~~~~ 78 (267)
T 1iy8_A 14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA---------------PDAEVLTTVADVSDEAQ 78 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC---------------TTCCEEEEECCTTSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc---------------CCceEEEEEccCCCHHH
Confidence 45555 889999999999999999999999988877665543100 01124455567776 45
Q ss_pred HHHHHHHHHH
Q psy13746 90 IENAKNTIQH 99 (294)
Q Consensus 90 ~~~~~~~~~~ 99 (294)
+++..+.+.+
T Consensus 79 v~~~~~~~~~ 88 (267)
T 1iy8_A 79 VEAYVTATTE 88 (267)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554433
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.01 Score=51.22 Aligned_cols=71 Identities=24% Similarity=0.190 Sum_probs=49.5
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |-+|+.+|..|++.|++|++.|++++.+++..+.+... ...+..+..|+.+ +
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~Dv~d~~ 74 (256)
T 3gaf_A 12 DAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA-----------------GGKAIGLECNVTDEQ 74 (256)
T ss_dssp TCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT-----------------TCCEEEEECCTTCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----------------CCcEEEEECCCCCHH
Confidence 356666 78999999999999999999999999888776655410 1123445567766 4
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 75 ~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 75 HREAVIKAALDQF 87 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5555555544433
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0066 Score=52.84 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=37.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.|+++| +-+|+++|..|++.|.+|.+.|++++.+++..+.+.
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~ 54 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLT 54 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 488899 779999999999999999999999999988877665
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0052 Score=53.65 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=35.9
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|+++| |.+|+.+|..|++.|++|++.+++++.+++..+.+.
T Consensus 27 k~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~ 71 (271)
T 4ibo_A 27 RTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFR 71 (271)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 66777 789999999999999999999999999888776654
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.011 Score=51.65 Aligned_cols=72 Identities=15% Similarity=0.065 Sum_probs=49.0
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |-+|+.+|..|++.|++|++.+++.+.+++..+.+... + ...+..+..|+.+ +
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~-------------~~~~~~~~~Dv~~~~ 90 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGA---T-------------GRRCLPLSMDVRAPP 90 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH---H-------------SSCEEEEECCTTCHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh---c-------------CCcEEEEEcCCCCHH
Confidence 466666 78999999999999999999999999887766554310 0 1123445567766 4
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 91 ~v~~~~~~~~~~~ 103 (277)
T 4fc7_A 91 AVMAAVDQALKEF 103 (277)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5555555544433
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0075 Score=54.12 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=32.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCC---hHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVL---SEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~---~~~~~~~~~~ 53 (294)
+++.|+ |-+|+++|..|+..|. +|++++|+ .++.++..+.
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~ 200 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEK 200 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHH
Confidence 577777 8999999999999998 89999999 6665554433
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0085 Score=52.70 Aligned_cols=32 Identities=19% Similarity=-0.002 Sum_probs=29.1
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
.++|.|. |.+|+.++..|++.|++|++.+|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE 38 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3678888 9999999999999999999999984
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.013 Score=50.37 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=34.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+
T Consensus 15 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 58 (260)
T 2zat_A 15 KVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATL 58 (260)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 55566 88999999999999999999999998877665544
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.009 Score=52.36 Aligned_cols=31 Identities=19% Similarity=0.053 Sum_probs=28.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
++|.|. |.+|+.++..|++.|++|++.+|++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred cEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 578888 9999999999999999999999987
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0081 Score=52.25 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=48.5
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |.+|+.+|..|++.|++|++.|++++.+++..+.+. ........|+.+ +.
T Consensus 12 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~~~~~ 71 (271)
T 3tzq_B 12 KVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVG--------------------RGAVHHVVDLTNEVS 71 (271)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHC--------------------TTCEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC--------------------CCeEEEECCCCCHHH
Confidence 56666 789999999999999999999999988877655431 234556678777 55
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
+++..+.+.+.+
T Consensus 72 v~~~~~~~~~~~ 83 (271)
T 3tzq_B 72 VRALIDFTIDTF 83 (271)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 555555544443
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0099 Score=50.65 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=30.8
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++.+++++.++...+.+
T Consensus 21 ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 55 (255)
T 1fmc_A 21 AGIGKEIAITFATAGASVVVSDINADAANHVVDEI 55 (255)
T ss_dssp SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 89999999999999999999999998877665544
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=96.41 E-value=0.011 Score=50.60 Aligned_cols=68 Identities=21% Similarity=0.156 Sum_probs=49.5
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |-+|+.+|..|++.|++|++.+++++.+++..+.+.. ....+.+|+.+ +
T Consensus 9 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------------~~~~~~~Dv~d~~ 68 (248)
T 3op4_A 9 GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD--------------------NGKGMALNVTNPE 68 (248)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG--------------------GEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--------------------cceEEEEeCCCHH
Confidence 366677 7899999999999999999999999988776654431 13445667777 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 69 ~v~~~~~~~~~~~ 81 (248)
T 3op4_A 69 SIEAVLKAITDEF 81 (248)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5666666554444
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.012 Score=50.59 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=33.6
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.++...+.+
T Consensus 10 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 53 (260)
T 2ae2_A 10 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW 53 (260)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 44555 88999999999999999999999998887765554
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0087 Score=54.82 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=33.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
++|+|+ |.||+.+|..|...|++|+++|++++++++.
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~ 212 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA 212 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 688899 9999999999999999999999998876643
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.014 Score=50.91 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=49.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |.+|+.+|..|++.|++|++.+++++.+++..+.+. ..+..+..|+.+ +
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~d~~ 87 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG--------------------DDALCVPTDVTDPD 87 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT--------------------SCCEEEECCTTSHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--------------------CCeEEEEecCCCHH
Confidence 467777 789999999999999999999999998877665432 234556678777 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 88 ~v~~~~~~~~~~~ 100 (272)
T 4dyv_A 88 SVRALFTATVEKF 100 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5655555544443
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.011 Score=51.03 Aligned_cols=31 Identities=32% Similarity=0.316 Sum_probs=28.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 478899 9999999999999997 899999997
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.012 Score=52.05 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=51.2
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |.+|+.+|..|++.|++|++.+++++.+++..+.+.. .....+.++..|+.+ +
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~----------------~~~~~~~~~~~Dv~d~~ 104 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGE----------------LGAGNVIGVRLDVSDPG 104 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTT----------------SSSSCEEEEECCTTCHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----------------hCCCcEEEEEEeCCCHH
Confidence 356677 7899999999999999999999999988877665431 001234556678877 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 105 ~v~~~~~~~~~~~ 117 (293)
T 3rih_A 105 SCADAARTVVDAF 117 (293)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5666666554444
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0076 Score=54.08 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=29.6
Q ss_pred CCccceEEE--ccccHHHHHHHHHC-CCeE-EEEeCChHHHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASA-GYKV-SLYDVLSEQIEN 49 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~-G~~V-~~~d~~~~~~~~ 49 (294)
|+..||+|| |.||..++..+.+. +.+| .++|+++++.++
T Consensus 3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~ 45 (329)
T 3evn_A 3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQA 45 (329)
T ss_dssp --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC
T ss_pred CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHH
Confidence 445689999 99999999988875 4554 488999887554
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0077 Score=50.30 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=29.9
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
+|.|. |.+|+.++..|++.|++|++++|+++.+
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~ 37 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV 37 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence 67777 9999999999999999999999998653
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.011 Score=50.72 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=51.4
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.++++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+.... +....+.++-.|+.+ +
T Consensus 7 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~Dv~~~~ 72 (250)
T 3nyw_A 7 KGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSN--------------KHVQEPIVLPLDITDCT 72 (250)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHC--------------TTSCCCEEEECCTTCHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc--------------cccCcceEEeccCCCHH
Confidence 356666 889999999999999999999999999888776654210 001234556678777 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 73 ~v~~~~~~~~~~~ 85 (250)
T 3nyw_A 73 KADTEIKDIHQKY 85 (250)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5555555544433
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0098 Score=51.58 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=51.5
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |-+|+.+|..|++.|++|++.+++++.+++..+.+... + ...+..+..|+.+ +.
T Consensus 21 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~-------------~~~~~~~~~Dv~~~~~ 84 (266)
T 4egf_A 21 KRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQ---F-------------GTDVHTVAIDLAEPDA 84 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH---H-------------CCCEEEEECCTTSTTH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh---c-------------CCcEEEEEecCCCHHH
Confidence 56677 78999999999999999999999999988776655410 0 1234556678777 55
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
+++..+.+.+.+
T Consensus 85 v~~~~~~~~~~~ 96 (266)
T 4egf_A 85 PAELARRAAEAF 96 (266)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 666666555544
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.013 Score=51.08 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=50.7
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |-+|+.+|..|++.|++|++.+++++.+++..+.+... ......+.+|+.+ +
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~Dv~d~~ 90 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA-----------------GLEGRGAVLNVNDAT 90 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-----------------TCCCEEEECCTTCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----------------CCcEEEEEEeCCCHH
Confidence 367777 78999999999999999999999999888776655411 1124455678777 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 91 ~v~~~~~~~~~~~ 103 (270)
T 3ftp_A 91 AVDALVESTLKEF 103 (270)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5655555544443
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.045 Score=48.36 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=34.1
Q ss_pred CCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 11 GGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 11 ~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++-++|.|. |.+|+.++..|++.|++|++++|+++..+...
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 52 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHH
Confidence 344577777 99999999999999999999999987765443
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.015 Score=50.54 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=46.1
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |.+|+.+|..|++.|++|++.+++++.++...+.+. +...+..|+.+ +.
T Consensus 10 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------------~~~~~~~Dv~d~~~ 68 (270)
T 1yde_A 10 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP---------------------GAVFILCDVTQEDD 68 (270)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT---------------------TEEEEECCTTSHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------------------CCeEEEcCCCCHHH
Confidence 44455 889999999999999999999999988776544321 24556678777 45
Q ss_pred HHHHHHHHHHH
Q psy13746 90 IENAKNTIQHT 100 (294)
Q Consensus 90 ~~~~~~~~~~~ 100 (294)
+++..+.+.+.
T Consensus 69 v~~~~~~~~~~ 79 (270)
T 1yde_A 69 VKTLVSETIRR 79 (270)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544433
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.016 Score=49.98 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=49.2
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
.|+++| |.+|+.+|..|++.|++|++. +++++.+++..+.+.. ....+.++..|+.+
T Consensus 4 ~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~~~ 66 (258)
T 3oid_A 4 NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEK-----------------LGVKVLVVKANVGQP 66 (258)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT-----------------TTCCEEEEECCTTCH
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----------------cCCcEEEEEcCCCCH
Confidence 466677 789999999999999999986 9999888877665541 01124455567766
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQHTL 101 (294)
Q Consensus 88 ~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 67 ~~v~~~~~~~~~~~ 80 (258)
T 3oid_A 67 AKIKEMFQQIDETF 80 (258)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 55655555554444
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.017 Score=50.05 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=48.0
Q ss_pred CCCCCccceEEE----ccccHHHHHHHHHCCCeEEEEe-CChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEE
Q psy13746 8 PAQGGFYPDGII----GLIGQAWAMIFASAGYKVSLYD-VLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSL 82 (294)
Q Consensus 8 ~~~~~~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (294)
|..|.-+|+++| |.+|+.+|..|++.|++|++.+ ++.+..+...+.+.. ....+.++.
T Consensus 19 p~~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 81 (269)
T 3gk3_A 19 PGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERD-----------------AGRDFKAYA 81 (269)
T ss_dssp -----CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHT-----------------TTCCCEEEE
T ss_pred chhhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHh-----------------cCCceEEEE
Confidence 445555678778 7899999999999999999999 565555544333220 112355666
Q ss_pred eecch-HHHHHHHHHHHHHH
Q psy13746 83 YDVLS-EQIENAKNTIQHTL 101 (294)
Q Consensus 83 ~d~~~-~~~~~~~~~~~~~l 101 (294)
.|+.+ +.+++..+.+.+.+
T Consensus 82 ~Dl~~~~~v~~~~~~~~~~~ 101 (269)
T 3gk3_A 82 VDVADFESCERCAEKVLADF 101 (269)
T ss_dssp CCTTCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHc
Confidence 77777 55666555554443
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0039 Score=55.09 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=32.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~ 49 (294)
+++.|+ |.+|++++..|+..|. +|++++|++++.++
T Consensus 123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~ 161 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSE 161 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 678888 9999999999999998 99999999987654
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0088 Score=52.53 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=34.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
+++.|+ |.+|++++..|++.|. +|++++|++++.++..+
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~ 162 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRN 162 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 678888 9999999999999996 99999999988776544
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.015 Score=50.93 Aligned_cols=71 Identities=24% Similarity=0.229 Sum_probs=49.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |.+|+++|..|++.|++|.+.+++++.+++..+.+.. ....+..+..|+.+ +
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dv~d~~ 90 (283)
T 3v8b_A 28 SPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG-----------------AGGQAIALEADVSDEL 90 (283)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTT-----------------TTCCEEEEECCTTCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEccCCCHH
Confidence 356666 7899999999999999999999999988877665531 01123445567766 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 91 ~v~~~~~~~~~~~ 103 (283)
T 3v8b_A 91 QMRNAVRDLVLKF 103 (283)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666655554444
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.024 Score=50.78 Aligned_cols=31 Identities=32% Similarity=0.552 Sum_probs=27.3
Q ss_pred cceEEE---ccccHHHHHHHHHC-C--CeEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASA-G--YKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~-G--~~V~~~d~~~ 44 (294)
+||+|+ |.+|.++|..++.. + .++.++|+++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~ 37 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP 37 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC
Confidence 489999 89999999999875 5 5899999997
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.013 Score=51.25 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=49.8
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+... ...+..+..|+.+ +.
T Consensus 33 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~Dl~d~~~ 95 (276)
T 3r1i_A 33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV-----------------GGKALPIRCDVTQPDQ 95 (276)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT-----------------TCCCEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----------------CCeEEEEEcCCCCHHH
Confidence 56666 78999999999999999999999999888776655410 1124455667776 55
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
+++..+.+.+.+
T Consensus 96 v~~~~~~~~~~~ 107 (276)
T 3r1i_A 96 VRGMLDQMTGEL 107 (276)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 666665554444
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.016 Score=50.70 Aligned_cols=67 Identities=24% Similarity=0.217 Sum_probs=48.9
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |.+|+.+|..|++.|++|++.|++++.+++..+.+. ..+..+..|+.+ +.
T Consensus 30 k~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~d~~~ 89 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIG--------------------CGAAACRVDVSDEQQ 89 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--------------------SSCEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC--------------------CcceEEEecCCCHHH
Confidence 66777 789999999999999999999999988877655431 134556667777 55
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
+++..+.+.+.+
T Consensus 90 v~~~~~~~~~~~ 101 (277)
T 3gvc_A 90 IIAMVDACVAAF 101 (277)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 666555554444
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0045 Score=54.30 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=25.6
Q ss_pred cceEEE--c-cccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGII--G-LIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii--G-~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
+++.|| | .+|+++|..|+..|.+|+++++
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~ 182 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHS 182 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeC
Confidence 678888 3 6899999999999999999974
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.036 Score=50.25 Aligned_cols=39 Identities=10% Similarity=0.005 Sum_probs=30.8
Q ss_pred CccceEEE--ccccHHHHHHHHHC-CCeE-EEEeCChHHHHHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASA-GYKV-SLYDVLSEQIENA 50 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~-G~~V-~~~d~~~~~~~~~ 50 (294)
+..+|+|| |.||+.++..+... ++++ .++|+++++.+..
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~ 47 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAF 47 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHH
T ss_pred CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHH
Confidence 34689999 99999999988875 5665 5899999876544
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.029 Score=50.11 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=29.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeC--ChHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDV--LSEQIE 48 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~--~~~~~~ 48 (294)
+||+|+ |.+|+.++..++..|+ ++.++|+ ++++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~ 42 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLE 42 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHH
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhH
Confidence 379999 9999999999998885 7999999 765443
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.014 Score=50.18 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=33.8
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 46 (256)
T 1geg_A 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI 46 (256)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45555 78999999999999999999999998887765554
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.012 Score=50.63 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=35.5
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+.
T Consensus 8 k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 52 (252)
T 3h7a_A 8 ATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIE 52 (252)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 55556 789999999999999999999999999888776654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.018 Score=49.68 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=48.9
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
++++| |.+|+.+|..|++.|++|++.+++++.+++..+.+... ...+.+..+|+++ +.
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~D~~~~~~ 92 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA-----------------GGEAESHACDLSHSDA 92 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----------------TCEEEEEECCTTCHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-----------------CCceeEEEecCCCHHH
Confidence 56666 88999999999999999999999999988776655410 1124555667766 45
Q ss_pred HHHHHHHHHHH
Q psy13746 90 IENAKNTIQHT 100 (294)
Q Consensus 90 ~~~~~~~~~~~ 100 (294)
++...+.+.+.
T Consensus 93 v~~~~~~~~~~ 103 (262)
T 3rkr_A 93 IAAFATGVLAA 103 (262)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555544443
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.025 Score=53.70 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.4
Q ss_pred CeeeccChhhhccCCcEEEEcC
Q psy13746 122 LISGTPVLRECLEDAIFIQESV 143 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieav 143 (294)
+++.++|..+|+++||+||.++
T Consensus 63 ~i~~t~d~~eAl~gAD~Vi~~~ 84 (477)
T 3u95_A 63 KVVKTESLDEAIEGADFIINTA 84 (477)
T ss_dssp EEEEESCHHHHHTTCSEEEECC
T ss_pred EEEEeCCHHHHhCCCCEEEECc
Confidence 3677899999999999999886
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.02 Score=49.28 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=47.7
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |-+|+.+|..|++.|++|++.+|+++.+++..+.+. ..+..+..|+.+ +.
T Consensus 9 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~~~~~ 68 (255)
T 4eso_A 9 KKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG--------------------PRVHALRSDIADLNE 68 (255)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--------------------GGEEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--------------------CcceEEEccCCCHHH
Confidence 55566 789999999999999999999999998877665432 124455667776 45
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
++...+.+.+.+
T Consensus 69 v~~~~~~~~~~~ 80 (255)
T 4eso_A 69 IAVLGAAAGQTL 80 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555544433
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.015 Score=50.36 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=48.8
Q ss_pred CCCccceEEE----ccccHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEee
Q psy13746 10 QGGFYPDGII----GLIGQAWAMIFASAGYKVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYD 84 (294)
Q Consensus 10 ~~~~~~i~ii----G~mG~~iA~~~~~~G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 84 (294)
.|.-.++++| |.+|+.+|..|++.|++|.+. +++++.++...+.+... ...+.++..|
T Consensus 22 ~m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~D 84 (272)
T 4e3z_A 22 SMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES-----------------GGEAVAIPGD 84 (272)
T ss_dssp --CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-----------------TCEEEEEECC
T ss_pred hccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhc-----------------CCcEEEEEcC
Confidence 3544567777 889999999999999999776 88888877766554310 1124455567
Q ss_pred cch-HHHHHHHHHHHHHH
Q psy13746 85 VLS-EQIENAKNTIQHTL 101 (294)
Q Consensus 85 ~~~-~~~~~~~~~~~~~l 101 (294)
+.+ +.++...+.+.+.+
T Consensus 85 l~~~~~v~~~~~~~~~~~ 102 (272)
T 4e3z_A 85 VGNAADIAAMFSAVDRQF 102 (272)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 766 44555555444433
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.029 Score=52.39 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=32.2
Q ss_pred CCCccceEEE--ccccH-HHHHHHHHC-CCeE-EEEeCChHHHHHHH
Q psy13746 10 QGGFYPDGII--GLIGQ-AWAMIFASA-GYKV-SLYDVLSEQIENAK 51 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~-~iA~~~~~~-G~~V-~~~d~~~~~~~~~~ 51 (294)
.|+..+|+|| |.||+ .++..+... ++++ .++|+++++.+...
T Consensus 80 ~~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a 126 (433)
T 1h6d_A 80 EDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVA 126 (433)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHH
T ss_pred CCCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHH
Confidence 3555689999 99997 888888774 5664 69999998866543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.013 Score=51.31 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=50.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |.+|+.+|..|++.|++|++.+++++.+++..+.+.... ...+..+.+|+.+ +
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~----------------~~~~~~~~~Dv~d~~ 96 (281)
T 4dry_A 33 GRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT----------------GNIVRAVVCDVGDPD 96 (281)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH----------------SSCEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----------------CCeEEEEEcCCCCHH
Confidence 367777 789999999999999999999999998887766554210 0113456678777 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 97 ~v~~~~~~~~~~~ 109 (281)
T 4dry_A 97 QVAALFAAVRAEF 109 (281)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5666666554444
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0061 Score=53.07 Aligned_cols=36 Identities=17% Similarity=0.069 Sum_probs=31.2
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
|+.++|.|. |.+|+.++..|++.|++|++++|+++.
T Consensus 1 M~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 1 MSLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP 38 (286)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 445788888 999999999999999999999998654
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.023 Score=49.65 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=47.2
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCC----------------hHHHHHHHHHHHhhhhhhhhcccccCCCCC
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVL----------------SEQIENAKNTIQHTLQDYHQKGCLKGSLSP 73 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~----------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 73 (294)
.|+++| |-+|+.+|..|++.|++|++.|++ ++.+++..+.+..
T Consensus 11 ~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 73 (286)
T 3uve_A 11 GKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG----------------- 73 (286)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHT-----------------
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhh-----------------
Confidence 366666 789999999999999999999998 6666655544331
Q ss_pred ccCCceeEEeecch-HHHHHHHHHHHHHH
Q psy13746 74 AHAGYKVSLYDVLS-EQIENAKNTIQHTL 101 (294)
Q Consensus 74 ~~~~~~v~~~d~~~-~~~~~~~~~~~~~l 101 (294)
....+.++-.|+.+ +.+++..+.+.+.+
T Consensus 74 ~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 102 (286)
T 3uve_A 74 HNRRIVTAEVDVRDYDALKAAVDSGVEQL 102 (286)
T ss_dssp TTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 01123445567766 55655555554444
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.026 Score=48.67 Aligned_cols=40 Identities=30% Similarity=0.446 Sum_probs=33.8
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+++++.+++..+.+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 51 (262)
T 1zem_A 8 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV 51 (262)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 44555 88999999999999999999999998887766554
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=96.19 E-value=0.031 Score=50.10 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=30.1
Q ss_pred cceEEE--ccccHHHHHHHHHCC---Ce-EEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG---YK-VSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G---~~-V~~~d~~~~~~~~~~ 51 (294)
.||+|| |.||+.++..+...+ ++ |.++|+++++.++..
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a 46 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFA 46 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHH
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHH
Confidence 589999 999999998887754 33 668999998876544
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.067 Score=45.46 Aligned_cols=38 Identities=11% Similarity=0.044 Sum_probs=31.9
Q ss_pred CCC--CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 7 FPA--QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 7 ~~~--~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
||- +..-++|.|| |.+|.+-+..|+++|.+|++++.+.
T Consensus 23 ~Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~ 64 (223)
T 3dfz_A 23 YTVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTV 64 (223)
T ss_dssp CEEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSC
T ss_pred cccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 454 3445789999 9999999999999999999999764
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.017 Score=51.02 Aligned_cols=32 Identities=19% Similarity=0.012 Sum_probs=29.2
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
+++|.|. |.+|+.++..|++.|++|++.+|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 3578888 9999999999999999999999986
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.021 Score=49.85 Aligned_cols=68 Identities=25% Similarity=0.162 Sum_probs=47.8
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |.+|+.+|..|++.|++|++.|++++.+++..+.+. ..+..+-.|+.+ +
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~d~~ 86 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG--------------------SKAFGVRVDVSSAK 86 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--------------------TTEEEEECCTTCHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--------------------CceEEEEecCCCHH
Confidence 356666 889999999999999999999999988776654321 123445567776 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 87 ~v~~~~~~~~~~~ 99 (277)
T 4dqx_A 87 DAESMVEKTTAKW 99 (277)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5555555544433
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.029 Score=49.22 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|+.+|..|++.|++|++.+|+++.++...+.+.
T Consensus 28 ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 63 (303)
T 1yxm_A 28 TGIGKAIVKELLELGSNVVIASRKLERLKSAADELQ 63 (303)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 899999999999999999999999988877665543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.017 Score=49.48 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=47.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |-+|+.+|..|++.|++|++.|++++.+++..+.+. ..+..+..|+.+ +.
T Consensus 7 k~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~~~~~ 66 (247)
T 3rwb_A 7 KTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIG--------------------KKARAIAADISDPGS 66 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC--------------------TTEEECCCCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--------------------CceEEEEcCCCCHHH
Confidence 55555 789999999999999999999999998877655431 123445567766 55
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
+++..+.+.+.+
T Consensus 67 v~~~~~~~~~~~ 78 (247)
T 3rwb_A 67 VKALFAEIQALT 78 (247)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
Confidence 655555554443
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.026 Score=48.79 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=50.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |-+|+.+|..|++.|++|++.+++++.+++..+.+.... ....+..+..|+.+ +
T Consensus 8 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~~Dv~~~~ 72 (265)
T 3lf2_A 8 EAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRF---------------PGARLFASVCDVLDAL 72 (265)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS---------------TTCCEEEEECCTTCHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc---------------CCceEEEEeCCCCCHH
Confidence 356666 789999999999999999999999999888776654210 01124455577777 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.++...+.+.+.+
T Consensus 73 ~v~~~~~~~~~~~ 85 (265)
T 3lf2_A 73 QVRAFAEACERTL 85 (265)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5655555554444
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.024 Score=48.34 Aligned_cols=72 Identities=15% Similarity=0.231 Sum_probs=47.1
Q ss_pred ccceEEE----ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 13 FYPDGII----GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 13 ~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..|+++| |.+|+.+|..|++.|++|++.++ +++.+++..+.+... ...+..+-.|+.+
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~Dv~d 65 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK-----------------GVDSFAIQANVAD 65 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-----------------TSCEEEEECCTTC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc-----------------CCcEEEEEccCCC
Confidence 3566777 78999999999999999999887 556666665554310 1123345567666
Q ss_pred -HHHHHHHHHHHHHH
Q psy13746 88 -EQIENAKNTIQHTL 101 (294)
Q Consensus 88 -~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 66 ~~~v~~~~~~~~~~~ 80 (246)
T 3osu_A 66 ADEVKAMIKEVVSQF 80 (246)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 45555555544433
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.024 Score=48.38 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++.+++++.++...+.+
T Consensus 23 ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l 57 (260)
T 3awd_A 23 QNIGLACVTALAEAGARVIIADLDEAMATKAVEDL 57 (260)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 89999999999999999999999998877665544
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.022 Score=49.48 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=34.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+
T Consensus 22 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 65 (273)
T 1ae1_A 22 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIW 65 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 55555 88999999999999999999999998887765544
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.05 Score=46.75 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=49.8
Q ss_pred cceEEE----c-cccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 14 YPDGII----G-LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 14 ~~i~ii----G-~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
.++++| | -+|+.+|..|++.|++|++.+++++.+++..+.+.. .....+.++..|+.+
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~----------------~~~~~~~~~~~Dl~~~ 85 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLAD----------------LGLGRVEAVVCDVTST 85 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT----------------TCSSCEEEEECCTTCH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh----------------cCCCceEEEEeCCCCH
Confidence 356666 4 399999999999999999999999998877665531 011235566677777
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQHTL 101 (294)
Q Consensus 88 ~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 86 ~~v~~~~~~~~~~~ 99 (266)
T 3o38_A 86 EAVDALITQTVEKA 99 (266)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555544433
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.14 E-value=0.012 Score=51.00 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=29.5
Q ss_pred ceEEE---ccccHHHHHHHHHC--CCeEEEEeCChHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASA--GYKVSLYDVLSEQIE 48 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~--G~~V~~~d~~~~~~~ 48 (294)
+|.|. |.+|+.++..|++. |++|++++|+++...
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~ 40 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS 40 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH
T ss_pred eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh
Confidence 56666 99999999999998 999999999986644
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.023 Score=48.48 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=42.5
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
|.+|+.+|..|++.|++|++.+|+++.+++..+.+ |..++..|+.+ +.+++..+.+.
T Consensus 15 ~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------------------~~~~~~~D~~~~~~~~~~~~~~~ 72 (245)
T 1uls_A 15 HGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----------------------GAHPVVMDVADPASVERGFAEAL 72 (245)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----------------------TCEEEECCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----------------------CCEEEEecCCCHHHHHHHHHHHH
Confidence 88999999999999999999999998776543311 35556678777 45555555443
Q ss_pred H
Q psy13746 99 H 99 (294)
Q Consensus 99 ~ 99 (294)
+
T Consensus 73 ~ 73 (245)
T 1uls_A 73 A 73 (245)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.023 Score=50.13 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=47.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCC------------hHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCc
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVL------------SEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGY 78 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 78 (294)
|+++| |-+|+.+|..|++.|++|+++|++ ++.+++..+.+.. ....+
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 91 (299)
T 3t7c_A 29 KVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA-----------------LGRRI 91 (299)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHH-----------------TTCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHh-----------------cCCce
Confidence 66677 789999999999999999999998 6666665554431 01124
Q ss_pred eeEEeecch-HHHHHHHHHHHHHH
Q psy13746 79 KVSLYDVLS-EQIENAKNTIQHTL 101 (294)
Q Consensus 79 ~v~~~d~~~-~~~~~~~~~~~~~l 101 (294)
.++..|+.+ +.+++..+.+.+.+
T Consensus 92 ~~~~~Dv~~~~~v~~~~~~~~~~~ 115 (299)
T 3t7c_A 92 IASQVDVRDFDAMQAAVDDGVTQL 115 (299)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHh
Confidence 455567766 45555555544443
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.021 Score=48.07 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=29.4
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.+|+.+|..|++.|++|++.+++++.++...+
T Consensus 15 ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (234)
T 2ehd_A 15 RGIGEATARLLHAKGYRVGLMARDEKRLQALAA 47 (234)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 899999999999999999999999988765543
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0097 Score=51.92 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=34.6
Q ss_pred CCCCccceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 9 AQGGFYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 9 ~~~~~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
.+|+ |+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+
T Consensus 18 ~~~~--k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~ 65 (272)
T 2nwq_A 18 SHMS--STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGEL 65 (272)
T ss_dssp ---C--CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCcC--cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence 3555 55566 88999999999999999999999998887765543
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.013 Score=51.27 Aligned_cols=71 Identities=20% Similarity=0.122 Sum_probs=49.0
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |-+|+.+|..|++.|++|++.+++++.+++..+.+.. ....+..+..|+.+ +
T Consensus 8 gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~~~~ 70 (280)
T 3tox_A 8 GKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG-----------------GGGEAAALAGDVGDEA 70 (280)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTT-----------------TTCCEEECCCCTTCHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEECCCCCHH
Confidence 356666 7899999999999999999999999988877665431 01123444557766 4
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.++...+.+.+.+
T Consensus 71 ~v~~~~~~~~~~~ 83 (280)
T 3tox_A 71 LHEALVELAVRRF 83 (280)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5555555544433
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.019 Score=52.13 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=30.9
Q ss_pred CCccceEEE--ccccHH-HHHHHHHC-CCeEE-EEeCChHHHHH
Q psy13746 11 GGFYPDGII--GLIGQA-WAMIFASA-GYKVS-LYDVLSEQIEN 49 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~-iA~~~~~~-G~~V~-~~d~~~~~~~~ 49 (294)
|+..||+|| |.||.. ++..+.+. +.+|. ++|+++++.+.
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~ 46 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARR 46 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGG
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHH
Confidence 445689999 999985 88888775 67766 99999987654
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.024 Score=49.40 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=49.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+... + .....+.++..|+.+ +.
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----------~---~~~~~~~~~~~Dv~~~~~ 72 (280)
T 1xkq_A 7 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKS-----------G---VSEKQVNSVVADVTTEDG 72 (280)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-----------T---CCGGGEEEEECCTTSHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc-----------C---CCCcceEEEEecCCCHHH
Confidence 55566 78999999999999999999999998887766554310 0 000124556678777 45
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
+++..+.+.+.+
T Consensus 73 v~~~~~~~~~~~ 84 (280)
T 1xkq_A 73 QDQIINSTLKQF 84 (280)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 555555444433
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.021 Score=49.55 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=48.3
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |.+|+.+|..|++.|++|.+.+++++.+++..+.+. ..+.++..|+.+ +
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~d~~ 86 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLG--------------------KDVFVFSANLSDRK 86 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--------------------SSEEEEECCTTSHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--------------------CceEEEEeecCCHH
Confidence 356667 789999999999999999999999988876654321 124455667776 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 87 ~v~~~~~~~~~~~ 99 (266)
T 3grp_A 87 SIKQLAEVAEREM 99 (266)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5555555544443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.021 Score=49.42 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=32.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
++|.|. |.+|+.++..|++.|++|++++|+++....
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 43 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEA 43 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHH
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhh
Confidence 688888 999999999999999999999999877654
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.022 Score=48.98 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=43.4
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
|.+|+.+|..|++.|++|++.+++++.++...+.+. ....++..|+.+ +.+++..+.+.
T Consensus 22 ~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~D~~d~~~v~~~~~~~~ 81 (263)
T 3ak4_A 22 KGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE--------------------NGGFAVEVDVTKRASVDAAMQKAI 81 (263)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT--------------------TCCEEEECCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--------------------cCCeEEEEeCCCHHHHHHHHHHHH
Confidence 889999999999999999999999988765543221 134556677776 45555555444
Q ss_pred HH
Q psy13746 99 HT 100 (294)
Q Consensus 99 ~~ 100 (294)
+.
T Consensus 82 ~~ 83 (263)
T 3ak4_A 82 DA 83 (263)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.023 Score=48.22 Aligned_cols=62 Identities=19% Similarity=0.102 Sum_probs=43.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
|.+|+.+|..|++.|++|++.+|+++.++...+.+.. ...+.++..|+.+ +.+++..+.+.
T Consensus 16 ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------------------~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (251)
T 1zk4_A 16 LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT------------------PDQIQFFQHDSSDEDGWTKLFDATE 77 (251)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC------------------TTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc------------------cCceEEEECCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999887765443320 0245666778776 44555554443
Q ss_pred H
Q psy13746 99 H 99 (294)
Q Consensus 99 ~ 99 (294)
+
T Consensus 78 ~ 78 (251)
T 1zk4_A 78 K 78 (251)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.024 Score=48.92 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=43.5
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
|.+|+.+|..|++.|++|++.+|+++.+++..+.+. ....++..|+.+ +.+++..+.+.
T Consensus 17 ~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~D~~~~~~v~~~~~~~~ 76 (260)
T 1nff_A 17 RGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA--------------------DAARYVHLDVTQPAQWKAAVDTAV 76 (260)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG--------------------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh--------------------cCceEEEecCCCHHHHHHHHHHHH
Confidence 899999999999999999999999988776554332 013455667776 45555555444
Q ss_pred HH
Q psy13746 99 HT 100 (294)
Q Consensus 99 ~~ 100 (294)
+.
T Consensus 77 ~~ 78 (260)
T 1nff_A 77 TA 78 (260)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.012 Score=52.93 Aligned_cols=36 Identities=6% Similarity=-0.212 Sum_probs=31.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++|.|+ |.+|+.+|..|.+.|+ |+++|+|++.++ +.
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~ 153 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VL 153 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HH
Confidence 468788 9999999999999999 999999999887 54
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.029 Score=49.50 Aligned_cols=68 Identities=22% Similarity=0.220 Sum_probs=48.2
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
++++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+... ...+.++..|+.+ +.
T Consensus 32 k~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-----------------~~~~~~~~~Dv~d~~~ 94 (301)
T 3tjr_A 32 RAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ-----------------GFDAHGVVCDVRHLDE 94 (301)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----------------TCCEEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------CCceEEEEccCCCHHH
Confidence 45556 78999999999999999999999999988877655410 1134556667776 44
Q ss_pred HHHHHHHHHH
Q psy13746 90 IENAKNTIQH 99 (294)
Q Consensus 90 ~~~~~~~~~~ 99 (294)
+++..+.+.+
T Consensus 95 v~~~~~~~~~ 104 (301)
T 3tjr_A 95 MVRLADEAFR 104 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554433
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.02 Score=49.15 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=35.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+.
T Consensus 12 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 57 (252)
T 3f1l_A 12 DRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHIN 57 (252)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 356666 789999999999999999999999999887766654
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0076 Score=54.49 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=32.3
Q ss_pred CCCccceEEE---ccccHHHHHHHHHC-CCeEEEEeCChHHHH
Q psy13746 10 QGGFYPDGII---GLIGQAWAMIFASA-GYKVSLYDVLSEQIE 48 (294)
Q Consensus 10 ~~~~~~i~ii---G~mG~~iA~~~~~~-G~~V~~~d~~~~~~~ 48 (294)
.|.+++|.|. |.+|+.++..|++. |++|++++|+++...
T Consensus 21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~ 63 (372)
T 3slg_A 21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLG 63 (372)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTG
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhh
Confidence 4556788888 99999999999998 999999999976543
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.035 Score=47.86 Aligned_cols=40 Identities=28% Similarity=0.252 Sum_probs=33.1
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++++| |.+|+.+|..|++.|++|++.+|+++..++..+.+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 51 (267)
T 2gdz_A 8 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAAL 51 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 45555 88999999999999999999999998877655443
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.028 Score=48.75 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=31.5
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+.+.
T Consensus 41 ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~ 76 (272)
T 1yb1_A 41 HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCK 76 (272)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHH
Confidence 899999999999999999999999988877655543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.021 Score=49.07 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=33.7
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.|++++.+++..+.+
T Consensus 9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 52 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI 52 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 45555 88999999999999999999999999887765543
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.026 Score=49.06 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=32.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeC-------------ChHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDV-------------LSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-------------~~~~~~~~~~~i 54 (294)
.|+++| |-+|+.+|..|++.|++|++.|+ +++.+++..+.+
T Consensus 11 ~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (277)
T 3tsc_A 11 GRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLV 68 (277)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHH
Confidence 356666 78999999999999999999999 666666655544
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.026 Score=48.45 Aligned_cols=33 Identities=30% Similarity=0.256 Sum_probs=29.4
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.+|+.+|..|++.|++|++.+|+++.+++..+
T Consensus 15 ~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (254)
T 1hdc_A 15 RGLGAEAARQAVAAGARVVLADVLDEEGAATAR 47 (254)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 889999999999999999999999988766543
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.01 Score=52.67 Aligned_cols=29 Identities=7% Similarity=0.054 Sum_probs=25.7
Q ss_pred ccceEEE--c-cccHHHHHHHHHCCCeEEEEe
Q psy13746 13 FYPDGII--G-LIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 13 ~~~i~ii--G-~mG~~iA~~~~~~G~~V~~~d 41 (294)
-+++.|| | .+|+.+|..|+..|.+|++++
T Consensus 165 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~h 196 (301)
T 1a4i_A 165 GRHAVVVGRSKIVGAPMHDLLLWNNATVTTCH 196 (301)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCeEEEEE
Confidence 3688899 6 579999999999999999997
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0073 Score=53.65 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=26.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
+++.|| |.+|+++|..|+..|.+|+++++.
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~ 198 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSG 198 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 678888 458999999999999999999873
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.024 Score=49.06 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=45.9
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
++++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+. ..+..+..|+.+ +.
T Consensus 7 k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~D~~~~~~ 66 (263)
T 2a4k_A 7 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--------------------AEAIAVVADVSDPKA 66 (263)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--------------------SSEEEEECCTTSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--------------------CceEEEEcCCCCHHH
Confidence 44455 889999999999999999999999988776544221 134455677777 44
Q ss_pred HHHHHHHHHHH
Q psy13746 90 IENAKNTIQHT 100 (294)
Q Consensus 90 ~~~~~~~~~~~ 100 (294)
++...+.+.+.
T Consensus 67 v~~~~~~~~~~ 77 (263)
T 2a4k_A 67 VEAVFAEALEE 77 (263)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544433
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.022 Score=49.76 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=47.5
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |-+|+.+|..|++.|++|++.+++++.+++..+.+. ..+..+..|+.+ +.
T Consensus 6 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~~~~~ 65 (281)
T 3zv4_A 6 EVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHG--------------------GNAVGVVGDVRSLQD 65 (281)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTB--------------------TTEEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcC--------------------CcEEEEEcCCCCHHH
Confidence 55666 789999999999999999999999988876544321 124455667776 55
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
+++..+.+.+.+
T Consensus 66 v~~~~~~~~~~~ 77 (281)
T 3zv4_A 66 QKRAAERCLAAF 77 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 555555554444
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.019 Score=51.47 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=31.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCC---hHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVL---SEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~---~~~~~~~~ 51 (294)
+++.|+ |-+|++++..|+..|. +|++++|+ .++.++..
T Consensus 149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la 192 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFA 192 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHH
Confidence 578888 9999999999999998 89999999 55554443
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.027 Score=48.83 Aligned_cols=40 Identities=35% Similarity=0.493 Sum_probs=34.1
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+
T Consensus 7 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (278)
T 1spx_A 7 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI 50 (278)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 55566 88999999999999999999999998887765544
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.013 Score=54.05 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=32.8
Q ss_pred CCccceEEE--cc---ccHHHHHHHHHCC-CeEE--EEeCChHHHHHHHH
Q psy13746 11 GGFYPDGII--GL---IGQAWAMIFASAG-YKVS--LYDVLSEQIENAKN 52 (294)
Q Consensus 11 ~~~~~i~ii--G~---mG~~iA~~~~~~G-~~V~--~~d~~~~~~~~~~~ 52 (294)
|+..||+|| |. ||...+..+...+ +++. ++|+++++.++..+
T Consensus 10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~ 59 (398)
T 3dty_A 10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGE 59 (398)
T ss_dssp CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHH
T ss_pred cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHH
Confidence 566789999 88 9999988887765 6765 68999988765443
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.022 Score=48.87 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=32.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++++| |.+|+.+|..|++.|++|++.+|+++.+++..+
T Consensus 7 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (253)
T 1hxh_A 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA 48 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45556 889999999999999999999999988776544
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.034 Score=47.79 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=33.7
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 51 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSL 51 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 44555 88999999999999999999999998877665544
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.028 Score=48.95 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=33.9
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+
T Consensus 23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 66 (277)
T 2rhc_B 23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL 66 (277)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 55555 88999999999999999999999998887665544
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.029 Score=48.19 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=30.0
Q ss_pred ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++.++ +++.+++..+.+
T Consensus 31 ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l 66 (274)
T 1ja9_A 31 RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL 66 (274)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHH
Confidence 89999999999999999999999 877776655444
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.033 Score=48.42 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=47.4
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeC-------------ChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCC
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDV-------------LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAG 77 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (294)
|+++| |-+|+.+|..|++.|++|++.|+ +++.+++..+.+.. ....
T Consensus 16 k~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 78 (280)
T 3pgx_A 16 RVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVED-----------------QGRK 78 (280)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHT-----------------TTCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHh-----------------cCCe
Confidence 56666 78999999999999999999998 67777766555431 0112
Q ss_pred ceeEEeecch-HHHHHHHHHHHHHH
Q psy13746 78 YKVSLYDVLS-EQIENAKNTIQHTL 101 (294)
Q Consensus 78 ~~v~~~d~~~-~~~~~~~~~~~~~l 101 (294)
+.....|+.+ +.+++..+.+.+.+
T Consensus 79 ~~~~~~Dv~~~~~v~~~~~~~~~~~ 103 (280)
T 3pgx_A 79 ALTRVLDVRDDAALRELVADGMEQF 103 (280)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3345567776 55666555554444
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.012 Score=51.81 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=25.7
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
-+++.|| |.+|+++|..|+..|..|++.++
T Consensus 160 Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~ 192 (285)
T 3p2o_A 160 GKDAVIIGASNIVGRPMATMLLNAGATVSVCHI 192 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 3678888 34799999999999999999874
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.013 Score=49.56 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=34.4
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|+++| |.+|+.+|..|++.|++|.+.+|+++.+++..+.+.
T Consensus 3 k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 47 (235)
T 3l77_A 3 KVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELM 47 (235)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 44555 789999999999999999999999998887766543
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.027 Score=48.81 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=34.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.++...+.+
T Consensus 22 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 65 (267)
T 1vl8_A 22 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL 65 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 55566 88999999999999999999999998887665544
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.012 Score=54.55 Aligned_cols=41 Identities=17% Similarity=0.076 Sum_probs=35.8
Q ss_pred cceEEE--ccccHHHHHHHHHCC---CeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG---YKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G---~~V~~~d~~~~~~~~~~~~i 54 (294)
++|+|+ |.+|+.+|..|++.| .+|+++|++++++++..+.+
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l 47 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSI 47 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHh
Confidence 589999 999999999999988 39999999999988766554
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.015 Score=51.41 Aligned_cols=32 Identities=16% Similarity=0.055 Sum_probs=29.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
++|.|. |.+|+.++..|++.|++|++.+|+++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~ 46 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS 46 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence 478788 99999999999999999999999875
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.015 Score=50.93 Aligned_cols=31 Identities=32% Similarity=0.219 Sum_probs=27.9
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
|+++| |-+|+.+|..|++.|++|++.+|+++
T Consensus 10 k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~ 44 (285)
T 3sc4_A 10 KTMFISGGSRGIGLAIAKRVAADGANVALVAKSAE 44 (285)
T ss_dssp CEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 56666 78999999999999999999999987
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.031 Score=47.36 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=30.7
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++.+|+++.+++..+.+
T Consensus 12 ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~ 46 (250)
T 2cfc_A 12 SGNGLAIATRFLARGDRVAALDLSAETLEETARTH 46 (250)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 88999999999999999999999998877655443
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.026 Score=48.43 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=46.6
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHH--HHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQ--IENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
|+++| |.+|+.+|..|++.|++|++.+++++. +++..+.+.. ....+..+..|+.+
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~~~ 65 (258)
T 3a28_C 3 KVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEA-----------------ADQKAVFVGLDVTDK 65 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHT-----------------TTCCEEEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHh-----------------cCCcEEEEEccCCCH
Confidence 45555 889999999999999999999999887 6655544331 01123445567776
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQHTL 101 (294)
Q Consensus 88 ~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 66 ~~v~~~~~~~~~~~ 79 (258)
T 3a28_C 66 ANFDSAIDEAAEKL 79 (258)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555444433
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.025 Score=49.71 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=33.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|+ |-+|+++|..|++.|++|++++|++++.++..+.
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~ 162 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS 162 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHH
Confidence 456666 7899999999999999999999998877665543
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.015 Score=49.94 Aligned_cols=67 Identities=18% Similarity=0.122 Sum_probs=42.2
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |.+|+.+|..|++.|++|++.+++++..++..+.+. ..+.....|+.+ +.
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~~~~~ 67 (257)
T 3tpc_A 8 RVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELG--------------------AAVRFRNADVTNEAD 67 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------------------------CEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC--------------------CceEEEEccCCCHHH
Confidence 56666 789999999999999999999999988766543321 134556677777 55
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
+++..+.+.+.+
T Consensus 68 v~~~~~~~~~~~ 79 (257)
T 3tpc_A 68 ATAALAFAKQEF 79 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 665555554444
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.016 Score=51.49 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=26.5
Q ss_pred CCccceEEE--ccccHHHHHHHHH-CCCeEE-EEeCChHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFAS-AGYKVS-LYDVLSEQI 47 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~-~G~~V~-~~d~~~~~~ 47 (294)
|+..||+|| |.||+.++..+.+ .++++. ++|++++++
T Consensus 7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~ 47 (304)
T 3bio_A 7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEV 47 (304)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-----
T ss_pred CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHH
Confidence 445689999 9999999999987 467876 899998764
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.025 Score=48.08 Aligned_cols=41 Identities=22% Similarity=0.163 Sum_probs=35.1
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|+++| |.+|+.+|..|++.|++|++.+++++.+++..+.+.
T Consensus 6 k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 50 (247)
T 3lyl_A 6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMK 50 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 55566 889999999999999999999999998887766554
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.035 Score=47.30 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=33.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i 54 (294)
++++| |.+|+.+|..|++.|++|++.++ +++.+++..+.+
T Consensus 5 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 49 (246)
T 2uvd_A 5 KVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEI 49 (246)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence 45566 88999999999999999999999 888777665544
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.031 Score=49.30 Aligned_cols=72 Identities=25% Similarity=0.311 Sum_probs=48.5
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+... +. ....+.++..|+.+ +.
T Consensus 27 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-----------~~---~~~~~~~~~~Dv~d~~~ 92 (297)
T 1xhl_A 27 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKA-----------GV---PAEKINAVVADVTEASG 92 (297)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----------TC---CGGGEEEEECCTTSHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----------CC---CCceEEEEecCCCCHHH
Confidence 56666 88999999999999999999999999887766554310 00 00124456677777 45
Q ss_pred HHHHHHHHHHH
Q psy13746 90 IENAKNTIQHT 100 (294)
Q Consensus 90 ~~~~~~~~~~~ 100 (294)
+++..+.+.+.
T Consensus 93 v~~~~~~~~~~ 103 (297)
T 1xhl_A 93 QDDIINTTLAK 103 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555544433
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.016 Score=50.31 Aligned_cols=34 Identities=9% Similarity=-0.087 Sum_probs=29.8
Q ss_pred cceEEE---ccccHHHHHHHHHC-CCeEEEEeCChHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASA-GYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~-G~~V~~~d~~~~~~ 47 (294)
++|.|. |.+|+.++..|++. |++|++.+|+++..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~ 38 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV 38 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGS
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHH
Confidence 367777 99999999999987 99999999998764
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.043 Score=47.28 Aligned_cols=60 Identities=27% Similarity=0.317 Sum_probs=42.0
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTI 97 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~ 97 (294)
|.+|+.+|..|++.|++|++.+++++..+...+.+. ....+.++..|+.+ +.++...+.+
T Consensus 26 ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~------------------~~~~~~~~~~D~~~~~~~~~~~~~~ 86 (278)
T 2bgk_A 26 GGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG------------------SPDVISFVHCDVTKDEDVRNLVDTT 86 (278)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC------------------CTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhC------------------CCCceEEEECCCCCHHHHHHHHHHH
Confidence 899999999999999999999999887665443321 01135566677776 4455444443
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.044 Score=50.86 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=31.3
Q ss_pred CCccceEEE--cc---ccHHHHHHHHHCC-CeEE--EEeCChHHHHHHHH
Q psy13746 11 GGFYPDGII--GL---IGQAWAMIFASAG-YKVS--LYDVLSEQIENAKN 52 (294)
Q Consensus 11 ~~~~~i~ii--G~---mG~~iA~~~~~~G-~~V~--~~d~~~~~~~~~~~ 52 (294)
|+..||+|| |. ||...+..+...+ +++. ++|+++++.++..+
T Consensus 35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~ 84 (417)
T 3v5n_A 35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGR 84 (417)
T ss_dssp CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHH
T ss_pred CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHH
Confidence 555689999 87 9998888877765 6764 78999988766543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.04 Score=47.13 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=44.4
Q ss_pred ccccHHHHHHHHH-CCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFAS-AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTI 97 (294)
Q Consensus 20 G~mG~~iA~~~~~-~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~ 97 (294)
|.+|+.+|..|++ .|++|++.+|+++..++..+.+... ...+.++..|+.+ +.++...+.+
T Consensus 14 ggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~-----------------~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (276)
T 1wma_A 14 KGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE-----------------GLSPRFHQLDIDDLQSIRALRDFL 76 (276)
T ss_dssp SHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT-----------------TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc-----------------CCeeEEEECCCCCHHHHHHHHHHH
Confidence 8999999999999 9999999999998877766554310 1124556677776 4455555544
Q ss_pred H
Q psy13746 98 Q 98 (294)
Q Consensus 98 ~ 98 (294)
.
T Consensus 77 ~ 77 (276)
T 1wma_A 77 R 77 (276)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0091 Score=53.56 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=28.2
Q ss_pred CCccceEEE--ccccHHHHHHHHHC-CCe-EEEEeCChHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASA-GYK-VSLYDVLSEQ 46 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~-G~~-V~~~d~~~~~ 46 (294)
|+..||+|| |.||+.++..+.+. +.+ |.++|++++.
T Consensus 1 M~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~ 40 (320)
T 1f06_A 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL 40 (320)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC
T ss_pred CCCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH
Confidence 344689999 99999999998876 566 4689988644
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.034 Score=48.55 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=33.0
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i 54 (294)
.|+++| |-+|+.+|..|++.|++|++.++ +++.++...+.+
T Consensus 25 ~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~ 70 (281)
T 3v2h_A 25 TKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEV 70 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHH
Confidence 355666 78999999999999999999999 666666655544
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.034 Score=50.23 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=27.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--e-----EEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--K-----VSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~-----V~~~d~~~ 44 (294)
.||+|+ |.+|+.+|..++..|. + +.++|+++
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~ 44 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP 44 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCC
Confidence 589998 9999999999998876 6 99999975
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.015 Score=51.28 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=33.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|+ |.+|+++|..|++.| +|++++|++++++...+.
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~ 169 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKE 169 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHH
Confidence 567777 999999999999999 999999999887665443
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.034 Score=47.70 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=33.5
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++.+| |.+|+.+|..|++.|++|++.+|+++.+++..+.+
T Consensus 15 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 58 (266)
T 1xq1_A 15 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW 58 (266)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 44555 89999999999999999999999998877665544
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.017 Score=48.76 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=29.8
Q ss_pred ccceEEE---ccccHHHHHHHHHCCC--eEEEEeCChHHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGY--KVSLYDVLSEQI 47 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~~~~ 47 (294)
.++|.|. |.+|+.++..|++.|+ +|++++|+++.+
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~ 57 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF 57 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence 3566666 8999999999999999 999999987653
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.046 Score=50.11 Aligned_cols=38 Identities=16% Similarity=-0.003 Sum_probs=30.3
Q ss_pred cceEEE--c-cccHHHHHHHHHC-CCeEE-EEeCChHHHHHHH
Q psy13746 14 YPDGII--G-LIGQAWAMIFASA-GYKVS-LYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G-~mG~~iA~~~~~~-G~~V~-~~d~~~~~~~~~~ 51 (294)
.||+|| | .||..++..+... ++++. ++|+++++.++..
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a 45 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFG 45 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHH
Confidence 589999 8 9999999988875 56654 8999998876543
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.098 Score=48.88 Aligned_cols=43 Identities=19% Similarity=0.137 Sum_probs=33.1
Q ss_pred CCCccceEEE--ccccHHHHHHHHHC-CCeE-EEEeCChHHHHHHHH
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASA-GYKV-SLYDVLSEQIENAKN 52 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~-G~~V-~~~d~~~~~~~~~~~ 52 (294)
.|+..+|+|| |.||...+..+... |++| .++|+++++++++.+
T Consensus 17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~ 63 (444)
T 2ixa_A 17 NPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQE 63 (444)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHH
T ss_pred CCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHH
Confidence 4555689999 99999999888874 6775 599999998776544
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.048 Score=47.33 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=32.7
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCC------------hHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVL------------SEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~------------~~~~~~~~~~i 54 (294)
.|+++| |.+|+.+|..|++.|++|+++|++ .+.+++..+.+
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEV 66 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHH
Confidence 356666 789999999999999999999998 66666555443
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.031 Score=47.85 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=42.5
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+.+. ..+.++..|+.+ +.+++..+.+.
T Consensus 22 ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~D~~~~~~v~~~~~~~~ 81 (265)
T 2o23_A 22 SGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLG--------------------NNCVFAPADVTSEKDVQTALALAK 81 (265)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHC--------------------TTEEEEECCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhC--------------------CceEEEEcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999887766544321 124455667766 45555555443
Q ss_pred H
Q psy13746 99 H 99 (294)
Q Consensus 99 ~ 99 (294)
+
T Consensus 82 ~ 82 (265)
T 2o23_A 82 G 82 (265)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.042 Score=46.69 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=30.3
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|.+|+.+|..|++.|++|++.+|+++.++...+.
T Consensus 21 ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 54 (254)
T 2wsb_A 21 SGIGLEICRAFAASGARLILIDREAAALDRAAQE 54 (254)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 8999999999999999999999999887765543
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.042 Score=48.11 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=34.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++|.|. |.+|+.+|..|++.|++|++.+|+++.++...+.+.
T Consensus 27 k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~ 71 (302)
T 1w6u_A 27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQIS 71 (302)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 344444 899999999999999999999999988877665543
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.037 Score=48.23 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=33.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+.+
T Consensus 45 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l 88 (285)
T 2c07_A 45 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI 88 (285)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHH
Confidence 344444 89999999999999999999999998877665544
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.055 Score=47.18 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=30.0
Q ss_pred cceEEE---ccccHHHHHHHHHCC-CeEEEEeCChHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAG-YKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G-~~V~~~d~~~~~~ 47 (294)
++|.|. |.+|+.++..|++.| ++|++.+|+++..
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~ 43 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKK 43 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSH
T ss_pred CEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCH
Confidence 567777 999999999999998 9999999998764
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=95.71 E-value=0.025 Score=49.31 Aligned_cols=69 Identities=14% Similarity=0.040 Sum_probs=46.8
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
+.++| |.+|+.+|..|++.|++|++.+|+++.++...+.+... ....+.++..|+.+ +.
T Consensus 29 k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dl~d~~~ 92 (286)
T 1xu9_A 29 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL----------------GAASAHYIAGTMEDMTF 92 (286)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------TCSEEEEEECCTTCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh----------------CCCceEEEeCCCCCHHH
Confidence 44455 88999999999999999999999999887766544310 00124455667776 44
Q ss_pred HHHHHHHHHH
Q psy13746 90 IENAKNTIQH 99 (294)
Q Consensus 90 ~~~~~~~~~~ 99 (294)
++...+.+.+
T Consensus 93 v~~~~~~~~~ 102 (286)
T 1xu9_A 93 AEQFVAQAGK 102 (286)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554433
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.056 Score=50.69 Aligned_cols=40 Identities=20% Similarity=0.104 Sum_probs=31.6
Q ss_pred ccceEEE--ccccHHHHHHHHH-CCCe-EEEEeCChHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFAS-AGYK-VSLYDVLSEQIENAKN 52 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~-~G~~-V~~~d~~~~~~~~~~~ 52 (294)
.-||+|| |.||+.++..+.+ .|.+ |.++|+++++.+.+.+
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~ 66 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIR 66 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHH
T ss_pred ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHH
Confidence 3589999 9999999988776 3555 5699999998776543
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.03 Score=50.04 Aligned_cols=34 Identities=21% Similarity=0.008 Sum_probs=29.8
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
.++|.|. |.+|+.++..|++.|++|++++|++..
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 61 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTG 61 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSC
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 4678777 999999999999999999999997653
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.023 Score=51.17 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=29.6
Q ss_pred ccceEEE--ccccHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQA-WAMIFASA-GYKVS-LYDVLSEQIENAKN 52 (294)
Q Consensus 13 ~~~i~ii--G~mG~~-iA~~~~~~-G~~V~-~~d~~~~~~~~~~~ 52 (294)
+.||||| |.||+. .+..+... +.+|. ++|+++++.++..+
T Consensus 23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~ 67 (350)
T 4had_A 23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMAD 67 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHH
T ss_pred ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH
Confidence 4699999 999976 45566654 66765 89999988776543
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.039 Score=47.14 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=43.6
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+.+... +. ........+.++..|+.+ +.+++..+.+.
T Consensus 17 ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 86 (264)
T 2pd6_A 17 SGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGP-------GS---KEGPPRGNHAAFQADVSEARAARCLLEQVQ 86 (264)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC----------------------CCEEEECCTTSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-------Cc---cccccCcceEEEEecCCCHHHHHHHHHHHH
Confidence 89999999999999999999999998877654433200 00 000011245666678777 44555555443
Q ss_pred H
Q psy13746 99 H 99 (294)
Q Consensus 99 ~ 99 (294)
+
T Consensus 87 ~ 87 (264)
T 2pd6_A 87 A 87 (264)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.04 Score=47.82 Aligned_cols=36 Identities=28% Similarity=0.223 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|+.+|..|++.|++|++.+|+++.++...+.+.
T Consensus 42 ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 77 (279)
T 1xg5_A 42 GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK 77 (279)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHH
Confidence 899999999999999999999999988877655543
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.031 Score=48.01 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=33.6
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.++...+.+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 51 (260)
T 2z1n_A 8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRI 51 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 44555 89999999999999999999999998887765544
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.017 Score=50.85 Aligned_cols=29 Identities=10% Similarity=0.159 Sum_probs=25.1
Q ss_pred cceEEE--c-cccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGII--G-LIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii--G-~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
+++.|| | .+|+++|..|...|.+|++..+
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs 193 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHR 193 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeC
Confidence 678888 3 4899999999999999999864
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.12 Score=46.93 Aligned_cols=41 Identities=5% Similarity=-0.149 Sum_probs=30.2
Q ss_pred CCccceEEE--ccccH-HHHHHHHHCCCe-EEEEeCChHHHHHHH
Q psy13746 11 GGFYPDGII--GLIGQ-AWAMIFASAGYK-VSLYDVLSEQIENAK 51 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~-~iA~~~~~~G~~-V~~~d~~~~~~~~~~ 51 (294)
|+..||+|| |.+|. .++..+...|++ |.++|+++++.++..
T Consensus 24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a 68 (361)
T 3u3x_A 24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFS 68 (361)
T ss_dssp --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHH
T ss_pred ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHH
Confidence 444689999 88885 567777778888 559999998876544
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.016 Score=51.10 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=25.7
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
-+++.|| |.+|+++|..|+..|.+|++..+
T Consensus 161 Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs 193 (286)
T 4a5o_A 161 GMDAVVVGASNIVGRPMALELLLGGCTVTVTHR 193 (286)
T ss_dssp TCEEEEECTTSTTHHHHHHHHHHTTCEEEEECT
T ss_pred CCEEEEECCCchhHHHHHHHHHHCCCeEEEEeC
Confidence 3688888 45899999999999999999864
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.036 Score=48.18 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=47.7
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|.+|.+.+++++..+...+ +.+. ......+..|+.+ +
T Consensus 7 gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~-~~~~-----------------~~~~~~~~~Dv~~~~ 68 (258)
T 4gkb_A 7 DKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDA-LAQR-----------------QPRATYLPVELQDDA 68 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHH-HHHH-----------------CTTCEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHH-HHhc-----------------CCCEEEEEeecCCHH
Confidence 488888 679999999999999999999999877554332 2210 0123345567766 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
++++..+.+.+.+
T Consensus 69 ~v~~~v~~~~~~~ 81 (258)
T 4gkb_A 69 QCRDAVAQTIATF 81 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666666555554
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.045 Score=47.47 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=48.0
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
.|+++| |.+|+.+|..|++.|++|.+.++ +++.++...+.+... ...+.++..|+.+
T Consensus 28 ~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~D~~d~ 90 (269)
T 4dmm_A 28 DRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA-----------------GGEAFAVKADVSQE 90 (269)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-----------------TCCEEEEECCTTSH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc-----------------CCcEEEEECCCCCH
Confidence 367777 78999999999999999999998 666666655544310 1123445567777
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQHTL 101 (294)
Q Consensus 88 ~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 91 ~~v~~~~~~~~~~~ 104 (269)
T 4dmm_A 91 SEVEALFAAVIERW 104 (269)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 55666555554444
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.03 Score=48.76 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=33.6
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+
T Consensus 30 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l 73 (276)
T 2b4q_A 30 RIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRL 73 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45555 88999999999999999999999998877665543
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.029 Score=47.40 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=31.9
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.+++..
T Consensus 8 ~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 48 (244)
T 1cyd_A 8 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLA 48 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 455555 89999999999999999999999998776543
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.033 Score=48.43 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=34.1
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.|++++.+++..+.+
T Consensus 31 k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 74 (281)
T 3ppi_A 31 ASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL 74 (281)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh
Confidence 45556 88999999999999999999999999888766543
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.012 Score=52.42 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=30.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
++|.|. |.+|+.++..|++.|++|++++|+++..
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 50 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQI 50 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhh
Confidence 478787 9999999999999999999999987653
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.062 Score=50.18 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=30.4
Q ss_pred CccceEEEc------cccHHHHHHHHHC--CCeE-EEEeCChHHHHHHH
Q psy13746 12 GFYPDGIIG------LIGQAWAMIFASA--GYKV-SLYDVLSEQIENAK 51 (294)
Q Consensus 12 ~~~~i~iiG------~mG~~iA~~~~~~--G~~V-~~~d~~~~~~~~~~ 51 (294)
+..+|+||| .||...+..+.+. +++| .++|+++++.+.+.
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a 67 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATI 67 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHH
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHH
Confidence 446899994 4788899998886 6775 69999998866543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.031 Score=48.49 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=46.5
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |.+|+.+|..|++.|++|++.+++++.+++..+... ..+..+.+|+.+ +.
T Consensus 6 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~~~~~ 65 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYP--------------------DRAEAISLDVTDGER 65 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCT--------------------TTEEEEECCTTCHHH
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--------------------CCceEEEeeCCCHHH
Confidence 55566 889999999999999999999999988776544211 235566678777 45
Q ss_pred HHHHHHHHHH
Q psy13746 90 IENAKNTIQH 99 (294)
Q Consensus 90 ~~~~~~~~~~ 99 (294)
++...+.+.+
T Consensus 66 ~~~~~~~~~~ 75 (281)
T 3m1a_A 66 IDVVAADVLA 75 (281)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554433
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.044 Score=47.82 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=48.4
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
.|+++| |-+|+.+|..|++.|++|++.++ +++.+++..+.+.. ....+..+..|+.+
T Consensus 29 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~d~ 91 (280)
T 4da9_A 29 RPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSG-----------------LGARVIFLRADLADL 91 (280)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH-----------------TTCCEEEEECCTTSG
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh-----------------cCCcEEEEEecCCCH
Confidence 366666 78999999999999999999996 77777766554431 01124455567776
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQHTL 101 (294)
Q Consensus 88 ~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 92 ~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 92 SSHQATVDAVVAEF 105 (280)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 55666666554444
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.051 Score=47.05 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=46.2
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCC------------hHHHHHHHHHHHhhhhhhhhcccccCCCCCccCC
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVL------------SEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAG 77 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (294)
.|+++| |.+|+.+|..|++.|++|++.|++ ++.+++..+.+... ...
T Consensus 13 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 75 (278)
T 3sx2_A 13 GKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI-----------------GSR 75 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH-----------------TCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc-----------------CCe
Confidence 355666 789999999999999999999998 66666554443310 112
Q ss_pred ceeEEeecch-HHHHHHHHHHHHHH
Q psy13746 78 YKVSLYDVLS-EQIENAKNTIQHTL 101 (294)
Q Consensus 78 ~~v~~~d~~~-~~~~~~~~~~~~~l 101 (294)
+..+..|+.+ +.+++..+.+.+.+
T Consensus 76 ~~~~~~D~~~~~~v~~~~~~~~~~~ 100 (278)
T 3sx2_A 76 IVARQADVRDRESLSAALQAGLDEL 100 (278)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4445567766 44555555444433
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.028 Score=49.00 Aligned_cols=41 Identities=27% Similarity=0.222 Sum_probs=35.6
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|+++| |.+|+.+|..|++.|++|++.+++++.+++..+.+.
T Consensus 34 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~ 78 (275)
T 4imr_A 34 RTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRII 78 (275)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 66777 789999999999999999999999998887766554
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.082 Score=45.36 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=47.7
Q ss_pred ceEEE----cc--ccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 15 PDGII----GL--IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 15 ~i~ii----G~--mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
|+++| |. +|+.+|..|++.|++|++.++++...+...+.... .....+.++..|+.+
T Consensus 8 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~~~~~~~~~~D~~~~ 71 (266)
T 3oig_A 8 RNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGT----------------LDRNDSIILPCDVTND 71 (266)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHT----------------SSSCCCEEEECCCSSS
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHh----------------cCCCCceEEeCCCCCH
Confidence 45555 44 99999999999999999999997655544433220 011246677788887
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQHTL 101 (294)
Q Consensus 88 ~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 72 ~~v~~~~~~~~~~~ 85 (266)
T 3oig_A 72 AEIETCFASIKEQV 85 (266)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 56666666555444
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.056 Score=48.17 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=47.6
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
++++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+.... ....+.++..|+.+ +.
T Consensus 9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~~Dl~~~~~ 73 (319)
T 3ioy_A 9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG---------------SGPEVMGVQLDVASREG 73 (319)
T ss_dssp CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT---------------CGGGEEEEECCTTCHHH
T ss_pred CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---------------CCCeEEEEECCCCCHHH
Confidence 45555 889999999999999999999999999888766554210 01134556677777 44
Q ss_pred HHHHHHHH
Q psy13746 90 IENAKNTI 97 (294)
Q Consensus 90 ~~~~~~~~ 97 (294)
++++.+.+
T Consensus 74 v~~~~~~~ 81 (319)
T 3ioy_A 74 FKMAADEV 81 (319)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.08 Score=47.34 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=27.9
Q ss_pred cceEEE---ccccHHHHHHHHHCCC-------eEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY-------KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~~ 44 (294)
+||.|+ |.+|+.++..|+..|+ +|.++|+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~ 45 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ 45 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence 588888 8999999999999996 899999975
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.035 Score=47.17 Aligned_cols=35 Identities=34% Similarity=0.360 Sum_probs=30.4
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVL-SEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~-~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++.+|+ ++.++...+.+
T Consensus 17 ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 52 (258)
T 3afn_B 17 QGIGLATARLFARAGAKVGLHGRKAPANIDETIASM 52 (258)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHH
Confidence 899999999999999999999999 77777655544
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.034 Score=50.03 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=33.2
Q ss_pred ccceEEE---ccccHHHHHHHHHC-CC-eEEEEeCChHHHHHHHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASA-GY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~-G~-~V~~~d~~~~~~~~~~~ 52 (294)
.++|.|. |.+|+.++..|++. |+ +|++++|++.......+
T Consensus 21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~ 65 (344)
T 2gn4_A 21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAM 65 (344)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHH
Confidence 3567666 99999999999999 97 99999999887665443
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.051 Score=47.20 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=26.2
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
|+++| |-+|+.+|..|++.|++|++.|++
T Consensus 11 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~ 43 (281)
T 3s55_A 11 KTALITGGARGMGRSHAVALAEAGADIAICDRC 43 (281)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 56666 789999999999999999999997
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.025 Score=47.65 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=30.1
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.+|+.+|..|++.|++|++.+|+++.+++..+
T Consensus 11 ~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (230)
T 3guy_A 11 SGLGAELAKLYDAEGKATYLTGRSESKLSTVTN 43 (230)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 789999999999999999999999998877654
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.041 Score=47.24 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=33.4
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHH-HHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQ-IENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~-~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+++++. +++..+.+
T Consensus 5 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 49 (260)
T 1x1t_A 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGL 49 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHH
Confidence 55666 789999999999999999999999887 76655544
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.019 Score=49.16 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=30.2
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|.+|+.+|..|++.|++|++.+|+++.+++..+.
T Consensus 10 ~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 43 (248)
T 3asu_A 10 AGFGECITRRFIQQGHKVIATGRRQERLQELKDE 43 (248)
T ss_dssp STTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 7899999999999999999999999887765543
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.029 Score=48.47 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=43.9
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| |.+|+.+|..|++.|++|++.+++++...+..+. .++..+..|+.+ +.
T Consensus 28 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~----------------------~~~~~~~~Dv~~~~~ 85 (260)
T 3gem_A 28 APILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQ----------------------AGAVALYGDFSCETG 85 (260)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHH----------------------HTCEEEECCTTSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHh----------------------cCCeEEECCCCCHHH
Confidence 56666 7899999999999999999999998775432221 135666778877 44
Q ss_pred HHHHHHHHH
Q psy13746 90 IENAKNTIQ 98 (294)
Q Consensus 90 ~~~~~~~~~ 98 (294)
+++..+.+.
T Consensus 86 v~~~~~~~~ 94 (260)
T 3gem_A 86 IMAFIDLLK 94 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555433
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.035 Score=47.93 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=29.2
Q ss_pred ceEEE---ccccHHHHHHHHHC--CCeEEEEeCChHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASA--GYKVSLYDVLSEQIE 48 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~--G~~V~~~d~~~~~~~ 48 (294)
+|.|. |.+|+.++..|++. |++|++.+|+++...
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~ 39 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ 39 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh
Confidence 35666 99999999999998 999999999987644
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.024 Score=47.80 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=31.2
Q ss_pred ccceEEE---ccccHHHHHHHHHC--CCeEEEEeCChHHHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASA--GYKVSLYDVLSEQIE 48 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~--G~~V~~~d~~~~~~~ 48 (294)
.++|.|. |.+|+.++..|++. |++|++.+|+++.++
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~ 44 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE 44 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchh
Confidence 4677777 99999999999999 899999999987654
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.033 Score=47.12 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=33.5
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++.+| |.+|+.+|..|++.|++|++.+|+++.++...+.+
T Consensus 8 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 51 (248)
T 2pnf_A 8 KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEI 51 (248)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence 44555 89999999999999999999999998877665544
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.085 Score=45.55 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=45.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
.|+++| |-+|+.+|..|++.|++|.+.++ +++.+++..+.+... ...+..+..|+.+
T Consensus 18 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~Dv~~~ 80 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL-----------------GSDAIAIKADIRQV 80 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-----------------TCCEEEEECCTTSH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-----------------CCcEEEEEcCCCCH
Confidence 466666 78999999999999999999776 455566555544310 1123445567766
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQHTL 101 (294)
Q Consensus 88 ~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 81 ~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 81 PEIVKLFDQAVAHF 94 (270)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 55555555554444
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.068 Score=45.93 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=47.4
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
|+++| |-+|+.+|..|++.|++|++. +++++..++..+.+.. ....+..+..|+.+ +
T Consensus 9 k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~~~~ 71 (259)
T 3edm_A 9 RTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEK-----------------LGRSALAIKADLTNAA 71 (259)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHT-----------------TTSCCEEEECCTTCHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----------------cCCceEEEEcCCCCHH
Confidence 55566 789999999999999999988 7777777666555431 01124556677777 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 72 ~v~~~~~~~~~~~ 84 (259)
T 3edm_A 72 EVEAAISAAADKF 84 (259)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666555554444
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.054 Score=48.52 Aligned_cols=33 Identities=30% Similarity=0.146 Sum_probs=29.2
Q ss_pred ccceEEE--ccccHH-HHHHHHHCCCeEEEEeCChH
Q psy13746 13 FYPDGII--GLIGQA-WAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 13 ~~~i~ii--G~mG~~-iA~~~~~~G~~V~~~d~~~~ 45 (294)
+++|.|| |.+|.+ +|..|++.|++|+++|..+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~ 39 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY 39 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 4799999 889995 89999999999999999753
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.046 Score=46.16 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=32.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.+++..+
T Consensus 8 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 3d3w_A 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 345454 899999999999999999999999987765443
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.057 Score=45.84 Aligned_cols=41 Identities=24% Similarity=0.288 Sum_probs=34.4
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
.+..+| |.+|+.+|..|++.|++|++.+++++.+++..+.+
T Consensus 14 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~ 58 (249)
T 3f9i_A 14 GKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL 58 (249)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence 345555 88999999999999999999999999888766543
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.015 Score=51.36 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=25.9
Q ss_pred ccceEEE--c-cccHHHHHHHHHCCCeEEEEeC
Q psy13746 13 FYPDGII--G-LIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 13 ~~~i~ii--G-~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
-+++.|| | .+|+.+|..|+..|.+|+++++
T Consensus 159 gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs 191 (288)
T 1b0a_A 159 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHR 191 (288)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred CCEEEEECCChHHHHHHHHHHHHCCCeEEEEeC
Confidence 3688999 6 4799999999999999999873
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.026 Score=50.78 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=30.3
Q ss_pred cceEEE--c-cccHHHHHHHHHC--CCeE-EEEeCChHHHHHHH
Q psy13746 14 YPDGII--G-LIGQAWAMIFASA--GYKV-SLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G-~mG~~iA~~~~~~--G~~V-~~~d~~~~~~~~~~ 51 (294)
.+|+|| | .||...+..+... ++++ .++|+++++.++..
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a 62 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFA 62 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHH
T ss_pred eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHH
Confidence 589999 8 8999999888876 4565 69999998876544
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.069 Score=45.72 Aligned_cols=32 Identities=34% Similarity=0.391 Sum_probs=28.0
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.+|+.+|..|++.|++|++.+++++. ++..+
T Consensus 16 ~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~ 47 (256)
T 2d1y_A 16 RGIGRAIAQAFAREGALVALCDLRPEG-KEVAE 47 (256)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHH
Confidence 889999999999999999999999877 54433
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.088 Score=45.44 Aligned_cols=39 Identities=31% Similarity=0.245 Sum_probs=30.5
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNT 53 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~ 53 (294)
|+++| |.+|+.+|..|++.|++|++.++ +++..+...+.
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 73 (271)
T 4iin_A 30 KNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNE 73 (271)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH
Confidence 55566 78999999999999999999999 45554544443
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.016 Score=52.03 Aligned_cols=35 Identities=26% Similarity=0.137 Sum_probs=29.6
Q ss_pred CccceEEE--cc-ccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 12 GFYPDGII--GL-IGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 12 ~~~~i~ii--G~-mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
.-+++.|| |. +|+.+|..|+..|.+|+++||+..+
T Consensus 176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~ 213 (320)
T 1edz_A 176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQ 213 (320)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEE
T ss_pred CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHH
Confidence 34688899 75 4999999999999999999998544
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.064 Score=45.76 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=30.1
Q ss_pred ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++.+| +++.+++..+.+
T Consensus 17 ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l 52 (261)
T 1gee_A 17 TGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEI 52 (261)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHH
Confidence 89999999999999999999999 887776655544
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.054 Score=47.54 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=29.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++|.|. |.+|+.++..|++.|++|++.+|++..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 38 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN 38 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc
Confidence 578777 999999999999999999999999443
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.067 Score=47.55 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=46.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCC------------hHHHHHHHHHHHhhhhhhhhcccccCCCCCccCC
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVL------------SEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAG 77 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (294)
.|+++| |.+|+.+|..|++.|++|+++|++ ++.+++..+.+.. ....
T Consensus 46 gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 108 (317)
T 3oec_A 46 GKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEE-----------------QGRR 108 (317)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHH-----------------TTCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHh-----------------cCCe
Confidence 367777 789999999999999999999987 5666555443321 0112
Q ss_pred ceeEEeecch-HHHHHHHHHHHHHH
Q psy13746 78 YKVSLYDVLS-EQIENAKNTIQHTL 101 (294)
Q Consensus 78 ~~v~~~d~~~-~~~~~~~~~~~~~l 101 (294)
+.++..|+.+ +.+++..+.+.+.+
T Consensus 109 ~~~~~~Dv~d~~~v~~~~~~~~~~~ 133 (317)
T 3oec_A 109 IIARQADVRDLASLQAVVDEALAEF 133 (317)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3445567766 55655555544443
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.05 Score=48.74 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=34.8
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEe-CChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYD-VLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d-~~~~~~~~~~~~i 54 (294)
++++| |.+|+.+|..|++.|++|++.+ ++++.++++.+.+
T Consensus 47 k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l 91 (328)
T 2qhx_A 47 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATL 91 (328)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 66777 7899999999999999999999 9998888766554
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.022 Score=48.90 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=32.2
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.++...+
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA 43 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 44555 889999999999999999999999988776544
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.038 Score=49.07 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=31.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.++..|++.|++|++.+++++......+
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~ 47 (341)
T 3enk_A 6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIA 47 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHH
T ss_pred cEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHH
Confidence 456565 899999999999999999999998776554433
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.056 Score=47.39 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=34.5
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEe-CChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYD-VLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d-~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+ |+++.+++..+.+
T Consensus 10 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l 54 (291)
T 1e7w_A 10 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATL 54 (291)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHH
Confidence 56677 7899999999999999999999 9998887766554
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.068 Score=46.23 Aligned_cols=65 Identities=18% Similarity=0.138 Sum_probs=46.1
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| |.+|+.+|..|++.|++|++++++++.++... ......+..|+.+ +
T Consensus 16 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~-----------------------~~~~~~~~~Dv~d~~ 72 (266)
T 3p19_A 16 KKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN-----------------------LPNTLCAQVDVTDKY 72 (266)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC-----------------------CTTEEEEECCTTCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh-----------------------cCCceEEEecCCCHH
Confidence 466666 78999999999999999999999987765321 1134556677777 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 73 ~v~~~~~~~~~~~ 85 (266)
T 3p19_A 73 TFDTAITRAEKIY 85 (266)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
Confidence 5666655544443
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.047 Score=47.17 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=35.7
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|+++| |.+|+.+|..|++.|++|++.|++++.+++..+.+.
T Consensus 11 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 55 (267)
T 3t4x_A 11 KTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIR 55 (267)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 66677 789999999999999999999999998887766654
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.031 Score=48.94 Aligned_cols=38 Identities=21% Similarity=0.078 Sum_probs=32.6
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.++...+
T Consensus 17 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~ 58 (291)
T 3rd5_A 17 RTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAAR 58 (291)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 55555 889999999999999999999999988776543
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.061 Score=46.56 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=46.5
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
.|+++| |-+|+.+|..|++.|++|++. .++++..++..+.+... ...+..+..|+.+
T Consensus 27 ~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~Dl~~~ 89 (267)
T 3u5t_A 27 NKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA-----------------GGKALTAQADVSDP 89 (267)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT-----------------TCCEEEEECCTTCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-----------------CCeEEEEEcCCCCH
Confidence 466777 789999999999999999987 55666666655544310 1123445567776
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQHTL 101 (294)
Q Consensus 88 ~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 90 ~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 90 AAVRRLFATAEEAF 103 (267)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 45555555554443
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.067 Score=45.15 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=29.2
Q ss_pred ccccHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLY-DVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~-d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++. +++++.++...+.+
T Consensus 15 ggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~ 50 (247)
T 2hq1_A 15 RGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEF 50 (247)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHH
Confidence 899999999999999999999 67777766655443
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.1 Score=45.89 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=46.7
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.|+++| | -+|+.+|..|++.|++|.+.+++++..+...+.... + .....+.+|+.+
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~----~--------------~~~~~~~~Dv~d 91 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAES----L--------------GVKLTVPCDVSD 91 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH----H--------------TCCEEEECCTTC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh----c--------------CCeEEEEcCCCC
Confidence 356666 3 799999999999999999999998665544433221 0 123456678777
Q ss_pred -HHHHHHHHHHHHHH
Q psy13746 88 -EQIENAKNTIQHTL 101 (294)
Q Consensus 88 -~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 92 ~~~v~~~~~~~~~~~ 106 (296)
T 3k31_A 92 AESVDNMFKVLAEEW 106 (296)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 55666666554444
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.087 Score=44.88 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=29.7
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCCh-HHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLS-EQIEN 49 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~-~~~~~ 49 (294)
|+++| |.+|+.+|..|++.|++|++.+|++ +.+++
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 47 (249)
T 2ew8_A 8 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA 47 (249)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH
Confidence 44555 8899999999999999999999998 66554
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.021 Score=52.51 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=28.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCC
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~ 43 (294)
.||.|+ |.+|..+|..+...|. +|+++|++
T Consensus 193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 588888 9999999999999998 89999998
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.079 Score=45.73 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=34.4
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i~ 55 (294)
++++| |.+|+.+|..|++.|++|++.++ +++.+++..+.+.
T Consensus 12 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~ 57 (276)
T 1mxh_A 12 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELN 57 (276)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHH
Confidence 45566 88999999999999999999999 9888877665543
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.089 Score=44.25 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=30.3
Q ss_pred ccccHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLY-DVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~-d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++. +++++.+++..+.+
T Consensus 11 ggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~ 46 (245)
T 2ph3_A 11 RGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEA 46 (245)
T ss_dssp SHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 899999999999999999998 89988877665544
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.14 Score=47.96 Aligned_cols=34 Identities=21% Similarity=0.059 Sum_probs=30.3
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
.-++|.|| |..|.+.|..|++.|++|+++|.++.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~ 43 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF 43 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 34789999 99999999999999999999999763
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.038 Score=48.27 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=28.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
|||.|. |.+|+.++..|.+.||+|++..|+++
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 478777 99999999999999999999998764
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.027 Score=49.45 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=27.5
Q ss_pred CccceEEE---ccccHHHHHHHHH-CCCeEE-EEeCChHH
Q psy13746 12 GFYPDGII---GLIGQAWAMIFAS-AGYKVS-LYDVLSEQ 46 (294)
Q Consensus 12 ~~~~i~ii---G~mG~~iA~~~~~-~G~~V~-~~d~~~~~ 46 (294)
+.+||+|+ |.||+.++..+.. .|+++. ++|++++.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~ 43 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSS 43 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCT
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchh
Confidence 34689999 8899999998775 678876 88887643
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.091 Score=45.02 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=34.7
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|+++| |.+|+.+|..|++.|++|++.+|+++.++...+.+.
T Consensus 6 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 50 (260)
T 2qq5_A 6 QVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQ 50 (260)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 55666 789999999999999999999999988877665543
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.13 Score=46.30 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=30.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
++|.|. |.+|+.++..|++.|++|++.+|+++..
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~ 42 (352)
T 1xgk_A 6 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL 42 (352)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChh
Confidence 578777 9999999999999999999999998764
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.12 Score=44.60 Aligned_cols=31 Identities=32% Similarity=0.271 Sum_probs=27.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 478899 9999999999999997 899999875
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=49.89 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=23.9
Q ss_pred cceEEE--ccccHHHHHH--HHHCCCe-EEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMI--FASAGYK-VSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~--~~~~G~~-V~~~d~~~~~~~ 48 (294)
.+|+|+ |.+|+.+|.. +...|++ |-++|.++++..
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g 125 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIG 125 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTT
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHH
Confidence 589999 9999999994 4456776 558999987643
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=94.91 E-value=0.064 Score=46.80 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=33.6
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCCh-HHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLS-EQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~-~~~~~~~~~i 54 (294)
++++| |.+|+.+|..|++.|++|++.+|++ +.+++..+.+
T Consensus 24 k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l 68 (288)
T 2x9g_A 24 PAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADEL 68 (288)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHH
Confidence 56666 8899999999999999999999998 7777665544
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.082 Score=45.24 Aligned_cols=68 Identities=10% Similarity=-0.007 Sum_probs=47.2
Q ss_pred cceEEE----ccccHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII----GLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.|+++| |-+|+.+|..|++. |+.|.+.+++++.+++..+.+. ..+..+..|+.+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~~ 61 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG--------------------DRFFYVVGDITE 61 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG--------------------GGEEEEESCTTS
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC--------------------CceEEEECCCCC
Confidence 366677 78999999999987 4799999999998877655432 124455667777
Q ss_pred -HHHHHHHHHHHHHH
Q psy13746 88 -EQIENAKNTIQHTL 101 (294)
Q Consensus 88 -~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 62 ~~~v~~~~~~~~~~~ 76 (254)
T 3kzv_A 62 DSVLKQLVNAAVKGH 76 (254)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 45555555544433
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.032 Score=50.76 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=27.0
Q ss_pred ccceEEE--ccccHH-HHHHHHHC-CCeEE-EEeCChHHHH
Q psy13746 13 FYPDGII--GLIGQA-WAMIFASA-GYKVS-LYDVLSEQIE 48 (294)
Q Consensus 13 ~~~i~ii--G~mG~~-iA~~~~~~-G~~V~-~~d~~~~~~~ 48 (294)
..||+|| |.||+. .+..+.+. +++|. ++|++++++.
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~ 47 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK 47 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH
Confidence 3689999 999997 56666654 77764 8999987643
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.12 Score=45.27 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=29.8
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCCh--HHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLS--EQIENAKN 52 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~--~~~~~~~~ 52 (294)
|+++| |-+|+.+|..|++.|++|.+.+++. +..++..+
T Consensus 50 k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~ 93 (294)
T 3r3s_A 50 RKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKA 93 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHH
Confidence 56666 7899999999999999999999973 34444443
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.042 Score=46.28 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=42.0
Q ss_pred ccccHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNT 96 (294)
Q Consensus 20 G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~ 96 (294)
|.+|+.+|..|++.| ++|++.+|+++.++...+. ....+.++..|+.+ +.+++..+.
T Consensus 13 ggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~--------------------~~~~~~~~~~D~~~~~~~~~~~~~ 72 (250)
T 1yo6_A 13 RGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI--------------------KDSRVHVLPLTVTCDKSLDTFVSK 72 (250)
T ss_dssp SHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC--------------------CCTTEEEEECCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhc--------------------cCCceEEEEeecCCHHHHHHHHHH
Confidence 889999999999999 9999999998876543210 01235566677776 455555554
Q ss_pred HHH
Q psy13746 97 IQH 99 (294)
Q Consensus 97 ~~~ 99 (294)
+.+
T Consensus 73 ~~~ 75 (250)
T 1yo6_A 73 VGE 75 (250)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.059 Score=51.02 Aligned_cols=41 Identities=10% Similarity=0.219 Sum_probs=30.2
Q ss_pred CCccceEEEc------cccHHHHHHHHHC--CCeE-EEEeCChHHHHHHH
Q psy13746 11 GGFYPDGIIG------LIGQAWAMIFASA--GYKV-SLYDVLSEQIENAK 51 (294)
Q Consensus 11 ~~~~~i~iiG------~mG~~iA~~~~~~--G~~V-~~~d~~~~~~~~~~ 51 (294)
|+..+|+||| .||...+..+... +++| .++|+++++.+...
T Consensus 37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a 86 (479)
T 2nvw_A 37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTI 86 (479)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHH
T ss_pred CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHH
Confidence 4445899994 4677888888875 6775 59999998876544
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.31 Score=43.16 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=29.8
Q ss_pred cceEEE--ccccHHHHHHHHH-CCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFAS-AGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~-~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++|..| |..|.+.. .+++ .|.+|+.+|++++.++.+++...
T Consensus 124 ~rVLDIGcG~G~~ta~-~lA~~~ga~V~gIDis~~~l~~Ar~~~~ 167 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGI-LLSHVYGMRVNVVEIEPDIAELSRKVIE 167 (298)
T ss_dssp CEEEEECCCSSCHHHH-HHHHTTCCEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEECCCccHHHHH-HHHHccCCEEEEEECCHHHHHHHHHHHH
Confidence 578888 76554322 2344 68999999999999999877543
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.032 Score=49.00 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=25.1
Q ss_pred ccceEEE--cc-ccHHHHHHHHHC--CCeEEEEeC
Q psy13746 13 FYPDGII--GL-IGQAWAMIFASA--GYKVSLYDV 42 (294)
Q Consensus 13 ~~~i~ii--G~-mG~~iA~~~~~~--G~~V~~~d~ 42 (294)
-+++.|| |. +|+.+|..|+.. |.+|++.++
T Consensus 158 gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~ 192 (281)
T 2c2x_A 158 GAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHT 192 (281)
T ss_dssp TCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECT
T ss_pred CCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 3688889 65 599999999999 889999863
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.087 Score=44.41 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=30.7
Q ss_pred ccccHHHHHHHHHCCC-------eEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGY-------KVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~-------~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|+ +|++.+++++.++...+.+
T Consensus 12 ggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~ 53 (244)
T 2bd0_A 12 KGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC 53 (244)
T ss_dssp SHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHH
Confidence 8899999999999999 9999999998877665544
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.094 Score=44.86 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=35.1
Q ss_pred cceEEE----ccccHHHHHHHHH---CCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFAS---AGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~---~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.|+++| |.+|+.+|..|++ .|++|++.+|+++.+++..+.+.
T Consensus 6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~ 54 (259)
T 1oaa_A 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG 54 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHH
Confidence 355666 8899999999999 89999999999998887666553
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.055 Score=46.77 Aligned_cols=39 Identities=28% Similarity=0.261 Sum_probs=32.2
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
++.+| |.+|+.+|..|++.|++|++.+++++..+...+.
T Consensus 35 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 77 (279)
T 3ctm_A 35 KVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHL 77 (279)
T ss_dssp CEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45555 8999999999999999999999998776655443
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.053 Score=46.31 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=30.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++|++.+|+.+......+
T Consensus 15 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 56 (265)
T 1h5q_A 15 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTE 56 (265)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHH
Confidence 344444 899999999999999999999997766554433
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.14 Score=44.91 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=28.6
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
|+++| |.+|+.+|..|++.|++|++.+++++..
T Consensus 48 k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~ 84 (291)
T 3ijr_A 48 KNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGD 84 (291)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH
Confidence 55666 7899999999999999999999997643
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.15 Score=43.19 Aligned_cols=72 Identities=21% Similarity=0.145 Sum_probs=47.0
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
.|+++| |-+|+.+|..|++.|++|.+. +++++..++..+.+... .....++-.|+.+
T Consensus 7 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~D~~~~ 69 (255)
T 3icc_A 7 GKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN-----------------GGSAFSIGANLESL 69 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHT-----------------TCEEEEEECCTTSH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhc-----------------CCceEEEecCcCCH
Confidence 466777 789999999999999999885 77777777665554310 0112334456655
Q ss_pred HHHHHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQHTLQ 102 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~ 102 (294)
+.++...+.+.+.+.
T Consensus 70 ~~~~~~~~~~~~~~~ 84 (255)
T 3icc_A 70 HGVEALYSSLDNELQ 84 (255)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 456666665555554
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.11 Score=45.51 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=43.9
Q ss_pred cceEEE----cc--ccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII----GL--IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii----G~--mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.|+++| |. +|+.+|..|++.|++|++.+++++..+...+.... + ..+..+.+|+.+
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~----~--------------~~~~~~~~Dv~d 92 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEE----L--------------GAFVAGHCDVAD 92 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHH----H--------------TCEEEEECCTTC
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh----c--------------CCceEEECCCCC
Confidence 356666 33 99999999999999999999997554443332210 0 123455667777
Q ss_pred -HHHHHHHHHHHH
Q psy13746 88 -EQIENAKNTIQH 99 (294)
Q Consensus 88 -~~~~~~~~~~~~ 99 (294)
+.+++..+.+.+
T Consensus 93 ~~~v~~~~~~~~~ 105 (293)
T 3grk_A 93 AASIDAVFETLEK 105 (293)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 455555554443
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.053 Score=46.47 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=43.3
Q ss_pred ccccHHHHHHHHHCC---CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAG---YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKN 95 (294)
Q Consensus 20 G~mG~~iA~~~~~~G---~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~ 95 (294)
|.+|+.+|..|++.| ++|++.+|+++..+...+ +.. ....+.++..|+.+ +.++...+
T Consensus 31 ggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~-l~~-----------------~~~~~~~~~~Dl~~~~~v~~~~~ 92 (267)
T 1sny_A 31 RGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-LAK-----------------NHSNIHILEIDLRNFDAYDKLVA 92 (267)
T ss_dssp SHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHH-HHH-----------------HCTTEEEEECCTTCGGGHHHHHH
T ss_pred CcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHH-hhc-----------------cCCceEEEEecCCChHHHHHHHH
Confidence 899999999999999 999999999876554322 110 01135566677776 55665555
Q ss_pred HHHHHH
Q psy13746 96 TIQHTL 101 (294)
Q Consensus 96 ~~~~~l 101 (294)
.+.+.+
T Consensus 93 ~~~~~~ 98 (267)
T 1sny_A 93 DIEGVT 98 (267)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 544433
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.23 Score=45.52 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=26.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--e---EEEEeCChHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--K---VSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~---V~~~d~~~~~ 46 (294)
.||+|+ |.+|.++|..++..+. + +.++|.+.+.
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~ 73 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER 73 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG
T ss_pred CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccc
Confidence 589999 9999999999998775 3 8887765543
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.1 Score=44.83 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=45.1
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEE-EeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSL-YDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~-~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
.|+++| |.+|+.+|..|++.|++|++ .+++++..++..+.+... ...+.++.+|+.+
T Consensus 26 ~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~-----------------~~~~~~~~~Dl~~~ 88 (267)
T 4iiu_A 26 SRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN-----------------GGNGRLLSFDVANR 88 (267)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-----------------TCCEEEEECCTTCH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-----------------CCceEEEEecCCCH
Confidence 355666 88999999999999999966 567777777665554310 1234556667776
Q ss_pred HHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQH 99 (294)
Q Consensus 88 ~~~~~~~~~~~~ 99 (294)
+.+++..+.+.+
T Consensus 89 ~~~~~~~~~~~~ 100 (267)
T 4iiu_A 89 EQCREVLEHEIA 100 (267)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555544433
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.13 Score=46.49 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=26.2
Q ss_pred CccceEEE--ccccHH-HHHHHHHC-CCeE-EEEeCChHH
Q psy13746 12 GFYPDGII--GLIGQA-WAMIFASA-GYKV-SLYDVLSEQ 46 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~-iA~~~~~~-G~~V-~~~d~~~~~ 46 (294)
+..||+|| |.||+. .+..+... +++| .++|+++++
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~ 43 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE 43 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH
Confidence 34689999 999987 56666554 6776 589999865
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.08 Score=46.01 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=26.4
Q ss_pred ceEEE--c--c--ccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII--G--L--IGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii--G--~--mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| | . +|+.+|..|++.|++|++.++++
T Consensus 27 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 62 (280)
T 3nrc_A 27 KKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ 62 (280)
T ss_dssp CEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence 56677 3 3 99999999999999999999998
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.16 Score=43.36 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=44.8
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHH-HHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
+|+++| |.+|+.+|..|++.|++|++.+++.+. .+...+.+.. + ...+.++..|+.+
T Consensus 7 ~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~----~-------------~~~~~~~~~Dl~~~ 69 (264)
T 3i4f_A 7 VRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKD----V-------------EERLQFVQADVTKK 69 (264)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGG----G-------------GGGEEEEECCTTSH
T ss_pred cCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh----c-------------CCceEEEEecCCCH
Confidence 355666 789999999999999999999776544 3333332210 0 1234556677777
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQHTL 101 (294)
Q Consensus 88 ~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 70 ~~v~~~~~~~~~~~ 83 (264)
T 3i4f_A 70 EDLHKIVEEAMSHF 83 (264)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55655555544433
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.12 Score=44.44 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=44.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChH---HHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSE---QIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
|+++| |-+|+.+|..|++.|++|++.+++.. .+++..+.+.. ....+..+..|+.+
T Consensus 12 k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~d 74 (262)
T 3ksu_A 12 KVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELED-----------------QGAKVALYQSDLSN 74 (262)
T ss_dssp CEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHT-----------------TTCEEEEEECCCCS
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHh-----------------cCCcEEEEECCCCC
Confidence 56666 78999999999999999999887644 44444333320 01123445567766
Q ss_pred -HHHHHHHHHHHHHH
Q psy13746 88 -EQIENAKNTIQHTL 101 (294)
Q Consensus 88 -~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 75 ~~~v~~~~~~~~~~~ 89 (262)
T 3ksu_A 75 EEEVAKLFDFAEKEF 89 (262)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 55655555554443
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.032 Score=49.42 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=28.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~ 45 (294)
.+|.|| |-+|+.+|..|+.+|. +++++|.+.=
T Consensus 37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~V 71 (292)
T 3h8v_A 37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV 71 (292)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence 478888 9999999999999996 8999998763
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.095 Score=44.30 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=25.7
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
|.+|+.+|..|++.|++|++.+|+++.
T Consensus 12 ~giG~~~a~~l~~~G~~V~~~~r~~~~ 38 (239)
T 2ekp_A 12 RGIGRAIAEALVARGYRVAIASRNPEE 38 (239)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 899999999999999999999999876
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.05 Score=50.20 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=30.0
Q ss_pred CCCc-cceEEE--ccccHHHHHHHHHC---------CCe-EEEEeCChHHHHHHHH
Q psy13746 10 QGGF-YPDGII--GLIGQAWAMIFASA---------GYK-VSLYDVLSEQIENAKN 52 (294)
Q Consensus 10 ~~~~-~~i~ii--G~mG~~iA~~~~~~---------G~~-V~~~d~~~~~~~~~~~ 52 (294)
.|+- -||||| |.||+..+..+.+. +.+ |.++|+++++.++..+
T Consensus 22 ~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~ 77 (412)
T 4gqa_A 22 SMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAA 77 (412)
T ss_dssp ---CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHH
T ss_pred cccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHH
Confidence 3443 389999 99999888877764 334 4589999998776544
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=94.48 E-value=0.092 Score=44.21 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=30.0
Q ss_pred ccccHHHHHHHHHCCCeEEE-EeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSL-YDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~-~d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++ .+++++..+...+.+
T Consensus 11 ggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~ 46 (244)
T 1edo_A 11 RGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI 46 (244)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 89999999999999999999 589988877665544
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.14 Score=43.64 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=27.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCe-EEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYK-VSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~-V~~~d~~~~ 45 (294)
++|.|. |.+|+.+|..|++.|++ |++.+++++
T Consensus 6 k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~ 41 (254)
T 1sby_A 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN 41 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCch
Confidence 455555 88999999999999997 999999874
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.15 Score=44.21 Aligned_cols=40 Identities=28% Similarity=0.241 Sum_probs=30.8
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVL-SEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~-~~~~~~~~~~i 54 (294)
|+++| |-+|+.+|..|++.|++|.+.+++ .+.++...+.+
T Consensus 32 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l 76 (271)
T 3v2g_A 32 KTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEI 76 (271)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence 56666 789999999999999999998665 45555555444
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.14 Score=44.39 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=28.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
|+++| |.+|+.+|..|++.|++|++.+++++.
T Consensus 30 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~ 65 (283)
T 1g0o_A 30 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE 65 (283)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence 56666 889999999999999999999998754
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.11 Score=44.94 Aligned_cols=32 Identities=25% Similarity=0.125 Sum_probs=28.2
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
|+++| |-+|+.+|..|++.|++|++.+|+++.
T Consensus 7 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~ 42 (274)
T 3e03_A 7 KTLFITGASRGIGLAIALRAARDGANVAIAAKSAVA 42 (274)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSC
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchh
Confidence 55666 789999999999999999999999764
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.085 Score=47.12 Aligned_cols=34 Identities=21% Similarity=0.047 Sum_probs=29.7
Q ss_pred CccceEEE---ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 12 GFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 12 ~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
..++|.|. |.+|+.++..|++.|++|++++|++.
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 62 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFAT 62 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 34678777 99999999999999999999999763
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.15 Score=45.36 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=33.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCC----------hHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVL----------SEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~----------~~~~~~~~~~i~ 55 (294)
.|+++| |-+|+.+|..|++.|++|++.|++ .+.++...+.+.
T Consensus 27 gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (322)
T 3qlj_A 27 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEIT 82 (322)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHH
Confidence 367777 789999999999999999999998 666666555543
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.12 Score=44.12 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=27.4
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
|+++| |.+|+.+|..|++.|++|++.+++++
T Consensus 5 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~ 39 (255)
T 2q2v_A 5 KTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP 39 (255)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 44555 88999999999999999999999876
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.3 Score=43.88 Aligned_cols=35 Identities=11% Similarity=0.306 Sum_probs=27.2
Q ss_pred cceEEE--ccccHH-HHHHHHHC-CCeEE-EEeCChHHHH
Q psy13746 14 YPDGII--GLIGQA-WAMIFASA-GYKVS-LYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~-iA~~~~~~-G~~V~-~~d~~~~~~~ 48 (294)
.||+|| |.||+. .+..+... +++|. ++|+++++.+
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~ 47 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH 47 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH
Confidence 589999 999997 66667664 67764 8999987654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 294 | ||||
| d1f0ya2 | 192 | c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA | 2e-23 | |
| d1wdka3 | 186 | c.2.1.6 (A:311-496) Fatty oxidation complex alpha | 6e-21 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 3e-09 | |
| d1f0ya1 | 99 | a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl | 7e-05 | |
| d1wdka2 | 95 | a.100.1.3 (A:621-715) Fatty oxidation complex alph | 0.002 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.002 |
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.1 bits (230), Expect = 2e-23
Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 41/220 (18%)
Query: 17 GIIG--LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
+IG L+G A + A+ G+ V L D + + +K I+ +L+ +
Sbjct: 8 TVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAK----------- 56
Query: 75 HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 134
+ G E+ I+ + +
Sbjct: 57 ----------------------------KKFAENPKAGDEFVEKTLSTIATSTDAASVVH 88
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
+ E++ E L++K+++++ +D F + +TI +S+TSS + ++ +T + +F H
Sbjct: 89 STDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHF 148
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 234
NP + LVE++ TS++ + +G PV+
Sbjct: 149 FNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC 188
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Score = 86.1 bits (212), Expect = 6e-21
Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 47/219 (21%)
Query: 17 GIIG--LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
++G ++G A AS G + + D+ IE L KG
Sbjct: 8 AVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKG--------- 58
Query: 75 HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 134
+ ++ N I+ TL
Sbjct: 59 ---------RMTPAKMAEVLNGIRPTLSYGDFGNV------------------------- 84
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
+ E+V E ++K V ++ + + IL+S+TS+ S+L++ F+ H
Sbjct: 85 --DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHF 142
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT 233
NP + +PLVE++ +S+ + T ++G P+
Sbjct: 143 FNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 53.8 bits (129), Expect = 3e-09
Identities = 25/186 (13%), Positives = 57/186 (30%), Gaps = 17/186 (9%)
Query: 50 AKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGC 109
A+ + ++ K ++ LS + +V+ + + K C
Sbjct: 68 AEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKP---------PKAC 118
Query: 110 LKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169
+ + PE+ ++ RE +E A + +P + + + + I++
Sbjct: 119 IH-LVHPEDVGLKVTSDD--REAVEGADIVITWLP-KGNKQPDIIKKFADAIPEGAIVTH 174
Query: 170 STSSFLPS---VLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTE 226
+ + + + HP P V I + SE + + EI
Sbjct: 175 ACTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIA-EGYASEEAVNKLYEIGKI 233
Query: 227 IGMKPV 232
K
Sbjct: 234 ARGKAF 239
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 7e-05
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 240 GFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEG 275
GF +NR+ L E L G S +DID M G
Sbjct: 1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLG 36
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 34.8 bits (80), Expect = 0.002
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 243 LNRIQFAVLNECYHLVHDGVL-SAKDIDRVMSEGLGLRYAFLGPLETIHL 291
+N + + E + DG++ +A + D + G+G G L I
Sbjct: 8 INWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDS 57
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 36.0 bits (82), Expect = 0.002
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 18 IIGL--IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAH 75
++GL G A+A A G V +D+ +++I+ ++ + G L +
Sbjct: 6 VLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSD 65
Query: 76 AGYKVSLYDVLSEQI-ENAKNTIQHTLQDYHQKGCL 110
G V DV+ + +I + Y +G L
Sbjct: 66 IGLAVKDADVILIVVPAIHHASIAANIASYISEGQL 101
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 294 | |||
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 100.0 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 100.0 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.81 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.76 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.74 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.69 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.68 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.68 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.64 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.62 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.51 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.46 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.44 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.38 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.33 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.32 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.29 | |
| d1f0ya1 | 99 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.23 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.2 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.06 | |
| d1wdka2 | 95 | Fatty oxidation complex alpha subunit, C-terminal | 98.95 | |
| d1wdka1 | 124 | Fatty oxidation complex alpha subunit, C-terminal | 98.95 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.7 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.56 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.49 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.42 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.22 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.22 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.2 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.19 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.19 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.14 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.14 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.12 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.12 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.05 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.04 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.03 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.02 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.97 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.95 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.89 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.89 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.89 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.89 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.85 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.85 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.82 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.8 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.76 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.73 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.68 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.63 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.62 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.59 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.58 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.51 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.5 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.42 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 97.36 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.35 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.32 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.28 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 97.28 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 97.24 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.22 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 97.17 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.11 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 97.09 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 97.08 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 97.08 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.08 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 97.06 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 97.03 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 97.02 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 97.01 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 97.01 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 97.01 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 97.01 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 97.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 96.98 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 96.98 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 96.96 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 96.96 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 96.93 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 96.93 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 96.92 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 96.92 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 96.86 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 96.85 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 96.83 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 96.81 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.78 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 96.75 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 96.73 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 96.72 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.7 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.7 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 96.69 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.64 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 96.59 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 96.59 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 96.57 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.56 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 96.56 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.52 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.48 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 96.46 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.4 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.4 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.4 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.39 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 96.37 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.19 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 96.13 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.12 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 96.09 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 96.07 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.04 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 96.04 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.0 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 95.91 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 95.88 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 95.85 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 95.81 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 95.81 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.79 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 95.64 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.64 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 95.63 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 95.61 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 95.46 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.41 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.4 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 95.38 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.33 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.28 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 95.16 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 95.15 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.14 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.12 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 95.11 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.03 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.99 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.94 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 94.89 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 94.85 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 94.84 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 94.77 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.76 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 94.75 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 94.74 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.73 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 94.61 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 94.61 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.49 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 94.36 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 94.36 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 94.31 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.27 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.25 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.23 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 94.22 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.16 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 94.07 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 94.02 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 94.0 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 93.98 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 93.92 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 93.91 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 93.88 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 93.87 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 93.84 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.83 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 93.68 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 93.62 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.61 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 93.52 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 93.3 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 93.25 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.22 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 93.21 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.2 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 93.14 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.1 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.93 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 92.79 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 92.67 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 92.63 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 92.5 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 92.45 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 92.4 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 92.25 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 92.24 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 92.23 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 92.23 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 92.14 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 92.07 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.06 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.86 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 91.66 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 91.65 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 91.59 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.58 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 91.56 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 91.51 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 91.48 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 91.43 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 91.3 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 91.29 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 90.93 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 90.92 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 90.58 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 90.44 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 90.42 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 90.34 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 90.25 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 90.24 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 90.16 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 89.98 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 89.97 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 89.88 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 89.76 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 89.72 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 89.67 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 89.64 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 89.39 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 89.36 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 89.27 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 89.25 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 88.86 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 88.5 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 88.47 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 88.38 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 88.36 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.29 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 88.21 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.89 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 87.85 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 87.81 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 87.66 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 87.53 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 87.45 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 87.44 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 86.96 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 86.95 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 86.59 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 86.48 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 86.33 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 86.06 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 86.03 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 85.35 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 85.11 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 84.92 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 84.75 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 84.73 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 84.69 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 84.65 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 84.4 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 84.24 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 84.01 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 83.97 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 83.92 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 83.87 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 83.86 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 83.81 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 83.69 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 83.38 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 83.14 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 83.07 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 82.56 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 82.46 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 82.18 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 82.16 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 81.98 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 81.89 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 81.7 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 81.46 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 81.32 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 80.84 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 80.8 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 80.41 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 80.19 |
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-39 Score=270.99 Aligned_cols=186 Identities=22% Similarity=0.341 Sum_probs=165.3
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
+|.++||+|| |.||++||..++++|++|++||++++.++++.+++.
T Consensus 1 ~~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~-------------------------------- 48 (192)
T d1f0ya2 1 KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIE-------------------------------- 48 (192)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH--------------------------------
T ss_pred CceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHH--------------------------------
Confidence 5789999999 999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCC----ChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCC
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSL----SPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSS 163 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~----~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~ 163 (294)
+.+..++++|...... .....+.+++.++|+.+++++||+||||+||++++|+++|+++++.+++
T Consensus 49 -----------~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~ 117 (192)
T d1f0ya2 49 -----------ESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAE 117 (192)
T ss_dssp -----------HHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCT
T ss_pred -----------HHHHHHHHhhhhccchhhHHHHHHHHhhccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhccc
Confidence 4455555554322100 0123567899999999899999999999999999999999999999999
Q ss_pred CeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc
Q psy13746 164 NTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR 239 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~ 239 (294)
++||+||||++++++++..+.+|+||+|+|||+|++..+++||++|+.|++++++.+..|++.+|+.|+++ +|.|
T Consensus 118 ~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v-~D~P 192 (192)
T d1f0ya2 118 HTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC-KDTP 192 (192)
T ss_dssp TCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEE-CSCT
T ss_pred CceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEe-eccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 5765
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=1.4e-37 Score=261.07 Aligned_cols=182 Identities=21% Similarity=0.299 Sum_probs=161.6
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
+++||+|| |.||++||..++++|++|++||++++.++++.+++.
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~---------------------------------- 48 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAA---------------------------------- 48 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHH----------------------------------
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhh----------------------------------
Confidence 58999999 999999999999999999999999999988877665
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+.+.+++.+|..... ..+..+++++.+++++ ++.+||+||||+||++++|+++|++|++.+++++||+|
T Consensus 49 ---------~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaS 117 (186)
T d1wdka3 49 ---------KLLVGRVDKGRMTPA-KMAEVLNGIRPTLSYG-DFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILAS 117 (186)
T ss_dssp ---------HHHHHHHTTTSSCHH-HHHHHHHHEEEESSST-TGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEE
T ss_pred ---------hhHHhhhcccccchh-hhhhhhceeecccccc-cccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEe
Confidence 445555544432210 1234677888888887 58999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR 239 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~ 239 (294)
|||+++++.+++.+.+|+||+|+|||+|++..+++||++|+.|++++++.+..|++.+|+.|+++ +|.|
T Consensus 118 nTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v-~d~P 186 (186)
T d1wdka3 118 NTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVV-NDCP 186 (186)
T ss_dssp CCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEE-ESCT
T ss_pred ccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCCHHHHHHHHHHHHHcCCEEEEE-eccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 5765
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.81 E-value=2.4e-19 Score=145.92 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=115.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||++||..|.++||+|++|||+++.++++++.
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~-------------------------------------- 42 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER-------------------------------------- 42 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------------------------------------
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh--------------------------------------
Confidence 579999 9999999999999999999999999887765431
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
|..+ ...++. +++++||+||.|+|.+. ..++++++.+.++++++|++.+
T Consensus 43 ----------------~~~~------------~~~~~~-~~~~~~DiIilavp~~~--~~~vl~~l~~~l~~~~iv~~~~ 91 (165)
T d2f1ka2 43 ----------------QLVD------------EAGQDL-SLLQTAKIIFLCTPIQL--ILPTLEKLIPHLSPTAIVTDVA 91 (165)
T ss_dssp ----------------TSCS------------EEESCG-GGGTTCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEECC
T ss_pred ----------------hccc------------eeeeec-ccccccccccccCcHhh--hhhhhhhhhhhcccccceeecc
Confidence 2111 223455 47899999999999654 6689999999999999998665
Q ss_pred CCCCHHHHHhhcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q psy13746 172 SSFLPSVLSEHSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT 233 (294)
Q Consensus 172 St~~~~~ia~~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~ 233 (294)
|. .............++++.||+.++. .+..+.+++...++++.++.++++|+.+|.++++
T Consensus 92 s~-~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~ 164 (165)
T d2f1ka2 92 SV-KTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYL 164 (165)
T ss_dssp SC-CHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEE
T ss_pred cc-chHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCEEEe
Confidence 54 3332222222234789999988642 2446678888889999999999999999999765
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.76 E-value=1.2e-17 Score=136.27 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=116.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|++|+|| |.||.+||..|.+.|+ +|++||++++.++.+++.
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----------------------------------- 45 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----------------------------------- 45 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-----------------------------------
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh-----------------------------------
Confidence 3589999 9999999999999996 799999999998876542
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChh-hhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR-ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~-~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
|..+ ...++.. ....++|+||.|+|.+. ..+++.++.+++++++++
T Consensus 46 -------------------~~~~------------~~~~~~~~~~~~~~dlIila~p~~~--~~~vl~~l~~~~~~~~ii 92 (171)
T d2g5ca2 46 -------------------GIID------------EGTTSIAKVEDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATV 92 (171)
T ss_dssp -------------------TSCS------------EEESCGGGGGGTCCSEEEECSCHHH--HHHHHHHHHHHSCTTCEE
T ss_pred -------------------hcch------------hhhhhhhhhhccccccccccCCchh--hhhhhhhhhccccccccc
Confidence 2111 1223333 23468999999999764 457889999999999999
Q ss_pred EecCCCCCH--HHHHhhcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q psy13746 168 SSSTSSFLP--SVLSEHSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT 233 (294)
Q Consensus 168 ~s~tSt~~~--~~ia~~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~ 233 (294)
++.+|+... ..+...+ +.+|++.|||.... .++.+.++++..++++.++.++.||+.+|.+++.
T Consensus 93 ~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~ 170 (171)
T d2g5ca2 93 TDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY 170 (171)
T ss_dssp EECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 988876442 2344333 45899999997542 2457789999999999999999999999999876
Q ss_pred E
Q psy13746 234 L 234 (294)
Q Consensus 234 v 234 (294)
+
T Consensus 171 M 171 (171)
T d2g5ca2 171 M 171 (171)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.74 E-value=8.6e-18 Score=136.29 Aligned_cols=150 Identities=18% Similarity=0.210 Sum_probs=112.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||++||.+|+++||+|++|||++++++++.+.
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~-------------------------------------- 42 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA-------------------------------------- 42 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------------------------------------
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHh--------------------------------------
Confidence 479999 9999999999999999999999999887765431
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s 169 (294)
| .....++.++++++|+||.|+|.+.+++..++ ..+...+.++++|++
T Consensus 43 ----------------~--------------~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid 92 (161)
T d1vpda2 43 ----------------G--------------AETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLID 92 (161)
T ss_dssp ----------------T--------------CEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEE
T ss_pred ----------------h--------------hhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEE
Confidence 2 24567888899999999999999877765554 347778889999885
Q ss_pred cCCCCCHHH---HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q psy13746 170 STSSFLPSV---LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 235 (294)
Q Consensus 170 ~tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~ 235 (294)
.||..++. +++.+. +..+|+.......+ ..+.+..++.| +++.+++++++|+.+|.++++++
T Consensus 93 -~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG---~~~~~~~~~~il~~~~~~i~~~G 161 (161)
T d1vpda2 93 -MSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGG---DKAIFDKYYDLMKAMAGSVVHTG 161 (161)
T ss_dssp -CSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHTTEEEEEEEE
T ss_pred -CCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcC---CHHHHHHHHHHHHHhcCceEECC
Confidence 45555553 333332 33455554433321 23456666666 78999999999999999998873
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.69 E-value=2e-16 Score=128.24 Aligned_cols=150 Identities=15% Similarity=0.259 Sum_probs=111.3
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
|+||+|| |.||++||.+|+++||+|++||+++++.+.+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~-------------------------------------- 42 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA-------------------------------------- 42 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH--------------------------------------
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhh--------------------------------------
Confidence 4689999 999999999999999999999999988765432
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH---HHhcccCCCeEE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR---AIDIFMSSNTIL 167 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~---~l~~~~~~~~ii 167 (294)
.| .....++.+++..+|+|+.|+|.+...+ .++. .+...+.++.+|
T Consensus 43 ----------------~~--------------~~~~~~~~e~~~~~diii~~v~~~~~~~-~v~~~~~~~~~~l~~g~ii 91 (162)
T d3cuma2 43 ----------------AG--------------ASAARSARDAVQGADVVISMLPASQHVE-GLYLDDDGLLAHIAPGTLV 91 (162)
T ss_dssp ----------------TT--------------CEECSSHHHHHTSCSEEEECCSCHHHHH-HHHHSTTCHHHHSCTTCEE
T ss_pred ----------------hh--------------ccccchhhhhccccCeeeecccchhhHH-HHHhccccccccCCCCCEE
Confidence 12 2345678888999999999999887654 4443 366678888888
Q ss_pred EecCCCCCHHH---HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q psy13746 168 SSSTSSFLPSV---LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 235 (294)
Q Consensus 168 ~s~tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~ 235 (294)
++ +||..++. +++.+. +..+|+..+....+ ..+.+..++.| +++.+++++++|+.+|+++++++
T Consensus 92 id-~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG---~~~~~~~~~~il~~~~~~v~~~G 162 (162)
T d3cuma2 92 LE-CSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGG---DAEALEKARPLFEAMGRNIFHAG 162 (162)
T ss_dssp EE-CSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EE-CCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecC---CHHHHHHHHHHHHHHcCccEECc
Confidence 74 55666663 344443 34566665444433 23556666666 78999999999999999998873
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.68 E-value=3.3e-16 Score=125.39 Aligned_cols=138 Identities=19% Similarity=0.198 Sum_probs=107.5
Q ss_pred CCCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 10 QGGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 10 ~~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
+..++||+|| |.||++||..|.++||+|++||++++...
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~-------------------------------------- 47 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA-------------------------------------- 47 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH--------------------------------------
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc--------------------------------------
Confidence 5677899999 99999999999999999999999864311
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
.+.++++|+++.++|... ...++.++.+.++++++
T Consensus 48 -------------------------------------------~~~~~~~~~v~~~~~~~~--~~~v~~~~~~~~~~~~i 82 (152)
T d2pv7a2 48 -------------------------------------------ESILANADVVIVSVPINL--TLETIERLKPYLTENML 82 (152)
T ss_dssp -------------------------------------------HHHHTTCSEEEECSCGGG--HHHHHHHHGGGCCTTSE
T ss_pred -------------------------------------------chhhhhccccccccchhh--heeeeecccccccCCce
Confidence 124678999999999765 45788899999999999
Q ss_pred EEecCCCCCHHHHHhhcC-CCCceeeeeecCCCCC----CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q psy13746 167 LSSSTSSFLPSVLSEHST-HRSQFIVAHPVNPPYF----IPLVEIVPAAWTSERVITRTREIMTEIGMKPVT 233 (294)
Q Consensus 167 i~s~tSt~~~~~ia~~l~-~~~~~ig~h~~~p~~~----~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~ 233 (294)
+++.+|+ .......... .+.+|++.||+..+.. +..+.++++ .+++.+++++++|+.+|.+++.
T Consensus 83 iiD~~Sv-k~~~~~~~~~~~~~~~v~~hP~~Gp~~~~~~g~~~v~~~g--~~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 83 LADLTSV-KREPLAKMLEVHTGAVLGLHPMFGADIASMAKQVVVRCDG--RFPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp EEECCSC-CHHHHHHHHHHCSSEEEEEEECSCTTCSCCTTCEEEEEEE--ECGGGTHHHHHHHHHTTCEEEE
T ss_pred EEEeccc-CHHHHHHHHHHccCCEEEecccCCCcccccCCcEEEEecC--CCHHHHHHHHHHHHHhCCEEEe
Confidence 9877654 3332222211 4568999999987643 457777777 4678899999999999999875
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.68 E-value=2.7e-16 Score=126.14 Aligned_cols=147 Identities=11% Similarity=0.100 Sum_probs=116.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||++|+..|.++|++|++|++++++.++..++.
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~------------------------------------- 43 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------------------------------------- 43 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-------------------------------------
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc-------------------------------------
Confidence 589999 99999999999999999999999998876543321
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
| +..+.++.+++.++|+||.|++++. ..++ .+.+.++++|+|.+
T Consensus 44 ----------------g--------------~~~~~~~~~~~~~~dvIilavkp~~--~~~v----l~~l~~~~~iis~~ 87 (152)
T d2ahra2 44 ----------------A--------------LPYAMSHQDLIDQVDLVILGIKPQL--FETV----LKPLHFKQPIISMA 87 (152)
T ss_dssp ----------------T--------------CCBCSSHHHHHHTCSEEEECSCGGG--HHHH----HTTSCCCSCEEECC
T ss_pred ----------------c--------------eeeechhhhhhhccceeeeecchHh--HHHH----hhhcccceeEeccc
Confidence 2 2456788888999999999997643 3344 44567788888899
Q ss_pred CCCCHHHHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 172 SSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 172 St~~~~~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
++++++.+.+.+....+++..+|..|...+. ...+..+...+++..+.++++|+.+|.. +.+
T Consensus 88 agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G~~-~~v 150 (152)
T d2ahra2 88 AGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGST-FDI 150 (152)
T ss_dssp TTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEE-EEC
T ss_pred ccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCHHHHHHHHHHHHhCCCE-EEe
Confidence 9999999998887667788888877766554 4446677778999999999999999954 554
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=9.7e-17 Score=137.55 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=121.5
Q ss_pred cceEEE--cc--ccHHHHH------HHHHCCCeEEEEeCChHHH-HHHHHHHHhhhhhhhhcccccCCCCCccCCceeEE
Q psy13746 14 YPDGII--GL--IGQAWAM------IFASAGYKVSLYDVLSEQI-ENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSL 82 (294)
Q Consensus 14 ~~i~ii--G~--mG~~iA~------~~~~~G~~V~~~d~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (294)
.+++++ |+ ||..|+. +|++.|+.|++.|.++++. +.+.+... ++|
T Consensus 41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~---~i~--------------------- 96 (242)
T d2b0ja2 41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNP---ESI--------------------- 96 (242)
T ss_dssp CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCG---GGT---------------------
T ss_pred eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCc---hhh---------------------
Confidence 455566 65 8888887 7999999999999998765 33322111 111
Q ss_pred eecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhc-------cCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH
Q psy13746 83 YDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQF-------GLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR 155 (294)
Q Consensus 83 ~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~-------~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~ 155 (294)
+..+++++.+........+...+ ..+++++|..+++++||+||+|+|+. +.++++++
T Consensus 97 ---------------~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~ 160 (242)
T d2b0ja2 97 ---------------MPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIK 160 (242)
T ss_dssp ---------------HHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHH
T ss_pred ---------------cchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHH
Confidence 12222222221111111111111 23667889999999999999999976 45778999
Q ss_pred HHhcccCCCeEEEecCCCCCHH---HHHhhcC-CCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy13746 156 AIDIFMSSNTILSSSTSSFLPS---VLSEHST-HRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMK 230 (294)
Q Consensus 156 ~l~~~~~~~~ii~s~tSt~~~~---~ia~~l~-~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~ 230 (294)
+|.+++++++||++. ||+++. .+++.+. ++.++++.||++++.... .+.++.+ ++++.+++++++|+.+|++
T Consensus 161 ~I~~~l~~g~Iiid~-STi~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~g~~li~~~~--aseE~iekv~elles~Gk~ 237 (242)
T d2b0ja2 161 KFADAIPEGAIVTHA-CTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAEGY--ASEEAVNKLYEIGKIARGK 237 (242)
T ss_dssp HHGGGSCTTCEEEEC-SSSCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCCCEEEEESS--SCHHHHHHHHHHHHHHHSC
T ss_pred HHHhhCCCCcEEEec-CCCcHHHHHHHHHhcccCCCEEECCCccCcCccccceEEecCC--CCHHHHHHHHHHHHHHCCC
Confidence 999999999999754 555554 3444454 467899999999876544 3334443 7999999999999999999
Q ss_pred eEEE
Q psy13746 231 PVTL 234 (294)
Q Consensus 231 ~v~v 234 (294)
+++|
T Consensus 238 ~~vv 241 (242)
T d2b0ja2 238 AFKM 241 (242)
T ss_dssp EEEE
T ss_pred eEeC
Confidence 9887
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.62 E-value=4.9e-15 Score=118.57 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=113.3
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||.+|+..|.++| ++|.+|||+++++++..++.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~------------------------------------ 44 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------------------------------------ 44 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------------------------------------
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc------------------------------------
Confidence 589999 999999999998877 99999999998877654320
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
| +...++.+ ++.++|+||.|++++. -.++++++ .+.+.+++|.
T Consensus 45 -----------------~--------------~~~~~~~~-~v~~~Div~lavkP~~--~~~v~~~l---~~~~~~viS~ 87 (152)
T d1yqga2 45 -----------------G--------------VETSATLP-ELHSDDVLILAVKPQD--MEAACKNI---RTNGALVLSV 87 (152)
T ss_dssp -----------------C--------------CEEESSCC-CCCTTSEEEECSCHHH--HHHHHTTC---CCTTCEEEEC
T ss_pred -----------------c--------------cccccccc-cccccceEEEecCHHH--HHHhHHHH---hhcccEEeec
Confidence 1 34456665 5789999999997532 33444444 3457788888
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEE-EecCCCCCHHHHHHHHHHHHHcCCee
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE-IVPAAWTSERVITRTREIMTEIGMKP 231 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lve-iv~g~~t~~e~~~~~~~ll~~lG~~~ 231 (294)
.++++++.+++.+....+++..+|..|...+..+. ++.+...+++..+.++.+|+.+|+..
T Consensus 88 ~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~ 149 (152)
T d1yqga2 88 AAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTV 149 (152)
T ss_dssp CTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEE
T ss_pred ccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCCEE
Confidence 89999999999887777889999998887766554 66777778999999999999999543
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.51 E-value=2.2e-14 Score=117.44 Aligned_cols=153 Identities=9% Similarity=0.031 Sum_probs=104.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
.+|+|| |.||++||.+|+++||+|++|||+++++++..+.-.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~------------------------------------ 46 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA------------------------------------ 46 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTT------------------------------------
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcc------------------------------------
Confidence 589999 999999999999999999999999999887654210
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.... ........++.+++.++|.+|.++|....+ .+++.++.+.+++++++++ +
T Consensus 47 ------------------~~~~------~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v-~~v~~~l~~~~~~g~iiid-~ 100 (176)
T d2pgda2 47 ------------------KGTK------VLGAHSLEEMVSKLKKPRRIILLVKAGQAV-DNFIEKLVPLLDIGDIIID-G 100 (176)
T ss_dssp ------------------TTSS------CEECSSHHHHHHHBCSSCEEEECSCTTHHH-HHHHHHHHHHCCTTCEEEE-C
T ss_pred ------------------cccc------ccchhhhhhhhhhhcccceEEEecCchHHH-HHHHHHHHhccccCcEEEe-c
Confidence 0000 000112345666789999999999998665 4567888889999998875 4
Q ss_pred CCCCHHH---HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeE
Q psy13746 172 SSFLPSV---LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 232 (294)
Q Consensus 172 St~~~~~---ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v 232 (294)
||..+.. +++.+. ...+|+.......+ ..+. ..++.| +++.+++++++|+.++.++.
T Consensus 101 sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG---~~~~~~~~~~il~~~~~kv~ 164 (176)
T d2pgda2 101 GNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGG---NKEAWPHIKAIFQGIAAKVG 164 (176)
T ss_dssp SCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEE---CTTTHHHHHHHHHHHSCBCT
T ss_pred CcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCC---CHHHHHHHHHHHHHHhcccC
Confidence 5555553 333332 33445443322211 1233 334554 77889999999999998863
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.46 E-value=2.5e-13 Score=111.03 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=104.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||.+||.+|+++||+|++|||++++.++..+.-..
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~----------------------------------- 46 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANAS----------------------------------- 46 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTT-----------------------------------
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCc-----------------------------------
Confidence 589999 9999999999999999999999999998876543110
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeec---cChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT---PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~---~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.. ....+... +++-..+..++.++++++....+. .++..+...+.++++++
T Consensus 47 -------------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iii 100 (178)
T d1pgja2 47 -------------------AP------FAGNLKAFETMEAFAASLKKPRKALILVQAGAATD-STIEQLKKVFEKGDILV 100 (178)
T ss_dssp -------------------ST------TGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEE
T ss_pred -------------------cc------cccchhhhhhhhHHHHhcccceEEEEeecCcchhh-hhhhhhhhhccccceec
Confidence 00 00011111 233345778999999998876654 45677777888888887
Q ss_pred ecCCCCCHH---HHHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeE
Q psy13746 169 SSTSSFLPS---VLSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 232 (294)
Q Consensus 169 s~tSt~~~~---~ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v 232 (294)
+ +|+..++ .+++.+. ...+|+.......+ ..+. ..++.| +++.+++++++|+.+++++.
T Consensus 101 ~-~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~mvgG---~~~~~~~v~pil~~~~~~~~ 166 (178)
T d1pgja2 101 D-TGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGG---TLSVWEEIRPIVEAAAAKAD 166 (178)
T ss_dssp E-CCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEE---CHHHHHHHHHHHHHHSCBCT
T ss_pred c-cCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEEeeC---CHHHHHHHHHHHHHHhcccc
Confidence 5 4555555 3444443 44566665444422 1232 335555 78999999999999998876
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=5.7e-14 Score=112.06 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=91.2
Q ss_pred eEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHH
Q psy13746 16 DGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENA 93 (294)
Q Consensus 16 i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 93 (294)
|+|| |.||++||..|.+.++.+.+|+|++++++++.+..
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~--------------------------------------- 42 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVY--------------------------------------- 42 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHT---------------------------------------
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcc---------------------------------------
Confidence 7899 99999999988776556679999999987765421
Q ss_pred HHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCC
Q psy13746 94 KNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS 173 (294)
Q Consensus 94 ~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt 173 (294)
+ ....+..++++.+|+||.|+|++. -.+++.++. .++.++++.+++
T Consensus 43 --------------~---------------~~~~~~~~~~~~~DiVil~v~d~~--i~~v~~~l~---~~~~ivi~~s~~ 88 (153)
T d2i76a2 43 --------------G---------------GKAATLEKHPELNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGF 88 (153)
T ss_dssp --------------C---------------CCCCSSCCCCC---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSS
T ss_pred --------------c---------------ccccchhhhhccCcEEEEeccchh--hhHHHhhhc---ccceeeeecccc
Confidence 1 112356668899999999999864 335555442 467888876666
Q ss_pred CCHHHHHhhcCCCCceeeeeecCCCCC--------CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q psy13746 174 FLPSVLSEHSTHRSQFIVAHPVNPPYF--------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 235 (294)
Q Consensus 174 ~~~~~ia~~l~~~~~~ig~h~~~p~~~--------~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~ 235 (294)
.+.+.+. +....+.||+.++.. ...+..+.+ +++.++.++++++.+|.+++++.
T Consensus 89 ~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---d~~~~~~~~~l~~~lG~~~~~i~ 150 (153)
T d2i76a2 89 LSSEIFK-----KSGRASIHPNFSFSSLEKALEMKDQIVFGLEG---DERGLPIVKKIAEEISGKYFVIP 150 (153)
T ss_dssp SCGGGGC-----SSSEEEEEECSCC--CTTGGGCGGGCCEEECC---CTTTHHHHHHHHHHHCSCEEECC
T ss_pred hhhhhhh-----hhccccceeeeecccccchhhhccCcEEEEeC---CHHHHHHHHHHHHHHCCcEEEeC
Confidence 6644332 223457787764321 123334444 67889999999999999999985
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=1.2e-12 Score=104.71 Aligned_cols=142 Identities=19% Similarity=0.206 Sum_probs=100.5
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
||+|| |.||++||.+|+++|+.| +|++++++..+..+..
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~-------------------------------------- 42 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEF-------------------------------------- 42 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHH--------------------------------------
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHc--------------------------------------
Confidence 79999 999999999999999866 6788777655433211
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
+ ...... +.+.++|++|.++|.+.++. .....+.+...++.++++ +|
T Consensus 43 ---------------~---------------~~~~~~-~~~~~~~~~i~~~~~~~~v~-~~~~~l~~~~~~~~~iid-~s 89 (156)
T d2cvza2 43 ---------------G---------------SEAVPL-ERVAEARVIFTCLPTTREVY-EVAEALYPYLREGTYWVD-AT 89 (156)
T ss_dssp ---------------C---------------CEECCG-GGGGGCSEEEECCSSHHHHH-HHHHHHTTTCCTTEEEEE-CS
T ss_pred ---------------C---------------Cccccc-ccccceeEEEecccchhhhh-hhhccccccccccccccc-cc
Confidence 1 112333 45788999999999876654 456788888899998874 56
Q ss_pred CCCHHH---HHhhcCCCCceeeeeecCCC--------CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcc
Q psy13746 173 SFLPSV---LSEHSTHRSQFIVAHPVNPP--------YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTT 236 (294)
Q Consensus 173 t~~~~~---ia~~l~~~~~~ig~h~~~p~--------~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~ 236 (294)
|..++. +++.+.. .+.+|++.| ..+.+..++.| +++++++++++|. +++++++++|
T Consensus 90 T~~p~~~~~~~~~~~~----~gi~~ldapVsGg~~~A~~G~L~~~vgG---~~~~~~~~~p~L~-~~~~v~~~GP 156 (156)
T d2cvza2 90 SGEPEASRRLAERLRE----KGVTYLDAPVSGGTSGAEAGTLTVMLGG---PEEAVERVRPFLA-YAKKVVHVGP 156 (156)
T ss_dssp CCCHHHHHHHHHHHHT----TTEEEEECCEESHHHHHHHTCEEEEEES---CHHHHHHHGGGCT-TEEEEEEEES
T ss_pred cCCHHHHHHHHHHHHH----cCCeEEeccccCchhhhccCCEEEEEeC---CHHHHHHHHHHHH-hcCcCEEeCc
Confidence 666653 4444431 144555432 23556766666 8999999999994 9999999863
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.33 E-value=2.2e-12 Score=102.69 Aligned_cols=145 Identities=13% Similarity=0.074 Sum_probs=96.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||++||..|+++||+|++||++++........
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~-------------------------------------- 42 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR-------------------------------------- 42 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH--------------------------------------
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh--------------------------------------
Confidence 489999 9999999999999999999999988765433211
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
| +....++.+++++||+||.|+|.+... ++..++.... +.++++ .
T Consensus 43 ----------------~--------------~~~~~~~~e~~~~~diIi~~v~~~~~~--~~~~~~~~~~--~~~~id-~ 87 (152)
T d1i36a2 43 ----------------T--------------VGVTETSEEDVYSCPVVISAVTPGVAL--GAARRAGRHV--RGIYVD-I 87 (152)
T ss_dssp ----------------H--------------HTCEECCHHHHHTSSEEEECSCGGGHH--HHHHHHHTTC--CSEEEE-C
T ss_pred ----------------c--------------ccccccHHHHHhhcCeEEEEecCchHH--HHHHhhcccC--Cceeec-c
Confidence 1 112456778899999999999987543 4555665554 344443 3
Q ss_pred CCCCHH---HHHhhcCCCCceeeeeecCCCC--CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc
Q psy13746 172 SSFLPS---VLSEHSTHRSQFIVAHPVNPPY--FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR 239 (294)
Q Consensus 172 St~~~~---~ia~~l~~~~~~ig~h~~~p~~--~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~ 239 (294)
|+..++ .+++.++ ..+|+....+.++. ......++.|+ +.+.+++ ++.+|..+.+++ +.|
T Consensus 88 st~~p~~~~~l~~~~~-~~~~~d~~v~g~~~~~~~~~~~~~~G~--~~~~~~~----l~~~g~~i~~~G-~~P 152 (152)
T d1i36a2 88 NNISPETVRMASSLIE-KGGFVDAAIMGSVRRKGADIRIIASGR--DAEEFMK----LNRYGLNIEVRG-REP 152 (152)
T ss_dssp SCCCHHHHHHHHHHCS-SSEEEEEEECSCHHHHGGGCEEEEEST--THHHHHG----GGGGTCEEEECS-SST
T ss_pred CcCCHHHHHHHHHHHh-ccCCCcccccCCcccccCCcEEEEECC--CHHHHHH----HHHcCCeeeEcC-CCC
Confidence 445544 4555554 34577777666542 23344466774 4444443 678999988885 443
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.32 E-value=5.2e-12 Score=104.35 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=101.0
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.++||+|| |.||+++|..|+++|++|++|+|+++.++...+... .+.|+..
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~--n~~yl~~------------------------ 58 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRE--NVLFLKG------------------------ 58 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTB--CTTTSTT------------------------
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccc--ccccccc------------------------
Confidence 567899999 999999999999999999999999998887654322 2233221
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcc-----cCC
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF-----MSS 163 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~-----~~~ 163 (294)
.....++++++|++++++++|+||.|+|... .+.+++++.+. .++
T Consensus 59 ----------------------------~~l~~~i~~t~~l~~a~~~ad~iiiavPs~~--~~~~~~~~~~~~~~~~~~~ 108 (189)
T d1n1ea2 59 ----------------------------VQLASNITFTSDVEKAYNGAEIILFVIPTQF--LRGFFEKSGGNLIAYAKEK 108 (189)
T ss_dssp ----------------------------CBCCTTEEEESCHHHHHTTCSCEEECSCHHH--HHHHHHHHCHHHHHHHHHH
T ss_pred ----------------------------cccccccccchhhhhccCCCCEEEEcCcHHH--HHHHHHHHHhhhhhhhccC
Confidence 1223568899999999999999999999653 56777776543 345
Q ss_pred CeEEEecCCCCCHH------HH-HhhcCCCCceeeeeecCCCC-------CCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy13746 164 NTILSSSTSSFLPS------VL-SEHSTHRSQFIVAHPVNPPY-------FIPLVEIVPAAWTSERVITRTREIMTE 226 (294)
Q Consensus 164 ~~ii~s~tSt~~~~------~i-a~~l~~~~~~ig~h~~~p~~-------~~~lveiv~g~~t~~e~~~~~~~ll~~ 226 (294)
+.++++.+-++..+ ++ .+.+ +.+-++ .+.+|. ..+...++.+ .+.+..+.++++|..
T Consensus 109 ~~~ii~~tKGie~~t~~~~seii~e~~--~~~~~~--vlsGP~~A~Ev~~~~pt~~viAs--~~~~~a~~i~~lfst 179 (189)
T d1n1ea2 109 QVPVLVCTKGIERSTLKFPAEIIGEFL--PSPLLS--VLAGPSFAIEVATGVFTCVSIAS--ADINVARRLQRIMST 179 (189)
T ss_dssp TCCEEECCCSCCTTTCCCHHHHHTTTS--CGGGEE--EEESSCCHHHHHTTCCEEEEEEC--SSHHHHHHHHHHHSC
T ss_pred CcEEEEEECCCccCCccchhhHHHHHh--cccceE--EEecCCcHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCC
Confidence 56666666555322 22 2222 222122 122221 1233334454 578888888888763
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.29 E-value=1.6e-11 Score=102.34 Aligned_cols=167 Identities=19% Similarity=0.167 Sum_probs=101.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
|||+|| |.+|.++|.+|+++||+|++||.|++.++...+... + +++..
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~---p----------------------~~e~~----- 50 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKS---P----------------------IVEPG----- 50 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCC---S----------------------SCCTT-----
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCC---c----------------------ccchh-----
Confidence 579999 999999999999999999999999998886543221 0 00000
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch--------HHHHHHHHH---Hhcc
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL--------QIKHQVYRA---IDIF 160 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~--------~~k~~~~~~---l~~~ 160 (294)
..+.+.+... ..++..++++.+++.+||+++.|+|.+. ..-..+... +...
T Consensus 51 -----~~~~l~~~~~-------------~~~~~~~~~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~ 112 (202)
T d1mv8a2 51 -----LEALLQQGRQ-------------TGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIRE 112 (202)
T ss_dssp -----HHHHHHHHHH-------------TTCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTT
T ss_pred -----hhhhhhhhhc-------------ccccccCCCHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeec
Confidence 0011211111 1347788999999999999999999742 122233333 3344
Q ss_pred cCCCeEEEecCCCCCHHHHHhh----c----CC--CCc-eeeeeecCCCCC--C--------CeEEEecCCCCCHHHHHH
Q psy13746 161 MSSNTILSSSTSSFLPSVLSEH----S----TH--RSQ-FIVAHPVNPPYF--I--------PLVEIVPAAWTSERVITR 219 (294)
Q Consensus 161 ~~~~~ii~s~tSt~~~~~ia~~----l----~~--~~~-~ig~h~~~p~~~--~--------~lveiv~g~~t~~e~~~~ 219 (294)
..++++|+ ..||+++...... + .. ... ++. +.|... + +...++++ .+++..+.
T Consensus 113 ~~~~~lii-i~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~---~~PE~~~~G~a~~d~~~~~~iViG~--~~~~~~~~ 186 (202)
T d1mv8a2 113 KSERHTVV-VRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVG---TNPEFLRESTAIKDYDFPPMTVIGE--LDKQTGDL 186 (202)
T ss_dssp CCSCCEEE-ECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEE---ECCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHH
T ss_pred ccCCccee-eccccCCcchhhhhhhhhhccccccccccccch---hhhhhhcccchhhhhcCCCeEEEEe--CCHHHHHH
Confidence 45666665 3566655432221 1 11 011 111 123211 1 11135565 47899999
Q ss_pred HHHHHHHcCCeeEEE
Q psy13746 220 TREIMTEIGMKPVTL 234 (294)
Q Consensus 220 ~~~ll~~lG~~~v~v 234 (294)
++++++.+...++..
T Consensus 187 ~~~ly~~i~~~ii~~ 201 (202)
T d1mv8a2 187 LEEIYRELDAPIIRK 201 (202)
T ss_dssp HHHHHTTSSSCEEEE
T ss_pred HHHHHHhcCCCeEec
Confidence 999999998776553
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.4e-12 Score=94.36 Aligned_cols=51 Identities=35% Similarity=0.567 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 240 GFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 240 g~v~nri~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
||++||++.++++||++++++|.+++++||.+++.++|+| +|||+++|.+|
T Consensus 1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p---~Gpf~~~D~vG 51 (99)
T d1f0ya1 1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFELLDYVG 51 (99)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCS---SCHHHHHHHHC
T ss_pred CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCC---CchHHHHHhhc
Confidence 7999999999999999999999999999999999999999 99999999987
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.20 E-value=5.1e-11 Score=96.81 Aligned_cols=101 Identities=20% Similarity=0.189 Sum_probs=76.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|| |.||.++|..|+++||+|++||++++.++...+...+ ..|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~------------------------------ 49 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAI--IAE------------------------------ 49 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSE--EEE------------------------------
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCC--chh------------------------------
Confidence 689999 9999999999999999999999999988776543210 000
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
. .+ ..........++++.++++++|+||.|+|.+. ...+++++.++++++++|+.
T Consensus 50 ----------------~--~~---~~~~~~~~~~~~~~~e~~~~aD~iii~v~~~~--~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 50 ----------------G--PG---LAGTAHPDLLTSDIGLAVKDADVILIVVPAIH--HASIAANIASYISEGQLIIL 104 (184)
T ss_dssp ----------------S--SS---CCEEECCSEEESCHHHHHTTCSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEE
T ss_pred ----------------h--hh---hhhhhhhhhhhhhhHhHhcCCCEEEEEEchhH--HHHHHHHhhhccCCCCEEEE
Confidence 0 00 00011123456788889999999999999876 56899999999999998764
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.06 E-value=1.3e-09 Score=88.81 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=73.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChH--HHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE--QIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
|||+|| |.||.++|..|+++|++|++|.|+.+ .++...+. |.++.|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~--~~~~~~---------------------------- 50 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAG--REHPRL---------------------------- 50 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTT--CCBTTT----------------------------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhh--hhhhhh----------------------------
Confidence 589999 99999999999999999999988543 33332211 111111
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
........+..++|+.++++++|+||.|+|... .+.+++++.+++++..++.
T Consensus 51 -------------------------~~~~~~~~i~~~~~~~~~~~~ad~Ii~avps~~--~~~~~~~l~~~l~~~~ii~- 102 (180)
T d1txga2 51 -------------------------GVKLNGVEIFWPEQLEKCLENAEVVLLGVSTDG--VLPVMSRILPYLKDQYIVL- 102 (180)
T ss_dssp -------------------------TBCCCSEEEECGGGHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTCCSCEEEE-
T ss_pred -------------------------cchhccccccccccHHHHHhccchhhcccchhh--hHHHHHhhccccccceecc-
Confidence 000011235678899999999999999999764 6789999999998887765
Q ss_pred cCCC
Q psy13746 170 STSS 173 (294)
Q Consensus 170 ~tSt 173 (294)
.+.+
T Consensus 103 ~tkg 106 (180)
T d1txga2 103 ISKG 106 (180)
T ss_dssp CCCS
T ss_pred cccC
Confidence 3443
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.95 E-value=3.5e-10 Score=82.55 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 240 GFALNRIQFAVLNECYHLVHDGVL-SAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 240 g~v~nri~~a~~~Ea~~l~~~~~~-~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
..|+||++.+++|||++++++|.+ +++|+|.++..|+|||....|||+++|.+|
T Consensus 5 ~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G 59 (95)
T d1wdka2 5 EDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIG 59 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHC
Confidence 348999999999999999999987 799999999999999955559999999987
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.95 E-value=2.8e-10 Score=87.24 Aligned_cols=49 Identities=31% Similarity=0.552 Sum_probs=46.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 240 GFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 240 g~v~nri~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
||++||++.++++||++++++| +++++||.+++ ++|+| +|||+++|.+|
T Consensus 1 GFi~NRi~~~~~~ea~~ll~eG-~~~~~ID~a~~-~~G~p---~Gpf~l~D~vG 49 (124)
T d1wdka1 1 GFLVNRVLFPYFGGFAKLVSAG-VDFVRIDKVME-KFGWP---MGPAYLMDVVG 49 (124)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH-HHTCS---SCHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHh-hccCC---CCHHHHHHhcc
Confidence 7999999999999999999997 58999999997 69998 99999999988
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.70 E-value=3.5e-08 Score=80.89 Aligned_cols=115 Identities=15% Similarity=0.237 Sum_probs=73.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
|||+|| |.+|.++|..++ .||+|++||++++.++...+... + +++
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~---p----------------------~~e------- 47 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLS---P----------------------IQD------- 47 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCC---S----------------------SCC-------
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhccc---c----------------------cch-------
Confidence 589999 999999998775 69999999999999887654321 0 011
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHH---------HHHHHHHHhcccC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQI---------KHQVYRAIDIFMS 162 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~---------k~~~~~~l~~~~~ 162 (294)
..++++.+... .+++.+.+...+..++|+++.|+|.+..- .....+.+... .
T Consensus 48 -------~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~-~ 108 (196)
T d1dlja2 48 -------EYIEYYLKSKQ-----------LSIKATLDSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSV-N 108 (196)
T ss_dssp -------HHHHHHHHHSC-----------CCEEEESCHHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHH-C
T ss_pred -------hhHHHHhhhhh-----------hhhhccchhhhhhhccccccccCCccccccCCCcceeEEeehhhhhhhc-c
Confidence 12222322221 23555666666789999999999985531 12233334433 4
Q ss_pred CCeEEEecCCCCCHHHHHh
Q psy13746 163 SNTILSSSTSSFLPSVLSE 181 (294)
Q Consensus 163 ~~~ii~s~tSt~~~~~ia~ 181 (294)
++.+++ ..|++++.....
T Consensus 109 ~~~~ii-i~Stv~pgt~~~ 126 (196)
T d1dlja2 109 SHATLI-IKSTIPIGFITE 126 (196)
T ss_dssp SSCEEE-ECSCCCTTHHHH
T ss_pred cceeEE-eeeecCceeeee
Confidence 556655 356666665444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=1.1e-08 Score=81.23 Aligned_cols=99 Identities=11% Similarity=0.093 Sum_probs=68.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
|||+|| |.||+.+|..|+++|++|++|+|+++..+....
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~--------------------------------------- 41 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNL--------------------------------------- 41 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEE---------------------------------------
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhcc---------------------------------------
Confidence 589999 999999999999999999999999864321100
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.+. . ..... .....+..+++.++|+||.|++... -.++++.+.++++++++|++..
T Consensus 42 ---------------~~~-~-----~~~~~-~~~~~~~~~~~~~~D~iii~vka~~--~~~~~~~l~~~~~~~~~Iv~~q 97 (167)
T d1ks9a2 42 ---------------VET-D-----GSIFN-ESLTANDPDFLATSDLLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIH 97 (167)
T ss_dssp ---------------ECT-T-----SCEEE-EEEEESCHHHHHTCSEEEECSCGGG--HHHHHHHHHTTSCTTSCEEEEC
T ss_pred ---------------ccC-C-----ccccc-cccccchhhhhcccceEEEeecccc--hHHHHHhhccccCcccEEeecc
Confidence 000 0 00001 1122333456899999999998764 4578889999998888776554
Q ss_pred CCCC
Q psy13746 172 SSFL 175 (294)
Q Consensus 172 St~~ 175 (294)
-++.
T Consensus 98 NG~~ 101 (167)
T d1ks9a2 98 NGMG 101 (167)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 4553
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.49 E-value=6.8e-07 Score=69.97 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=31.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
+||+|| |.+|+.+|..++..|. ++.++|++++.++
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~ 45 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAI 45 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccccc
Confidence 699999 9999999999999886 8999999998754
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.42 E-value=9.5e-07 Score=68.95 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=31.3
Q ss_pred cceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~ 48 (294)
+||+|| |.+|+++|..++..| .+|.++|++++..+
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~ 44 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTK 44 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhH
Confidence 599999 999999999999988 48999999987654
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.22 E-value=8.5e-06 Score=63.03 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=31.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
+||+|| |.+|+++|..++..|. ++.++|++++..+
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~ 39 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAV 39 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhh
Confidence 589999 9999999999998875 8999999988764
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.20 E-value=9.4e-06 Score=62.87 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=31.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
.||+|| |.+|+.+|..++..|. ++.++|++++.++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~ 40 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE 40 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccch
Confidence 589999 9999999999999886 8999999997754
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.19 E-value=1.3e-05 Score=61.91 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=31.8
Q ss_pred cceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~~ 49 (294)
+||+|| |.+|.++|..++..| .++.++|++++.++.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~ 40 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQG 40 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchh
Confidence 489999 999999999999988 499999999987653
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.19 E-value=3.7e-06 Score=64.00 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=34.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
+++.|+ |.+|+.+|..|.+.|++|+++|.|++.++++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~ 40 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYA 40 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH
Confidence 467888 99999999999999999999999999988653
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.14 E-value=9e-06 Score=62.73 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=30.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
+||+|| |.+|.++|..++..|. ++.++|++++.++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~ 39 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAE 39 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccccccc
Confidence 489999 9999999999998774 8999999987755
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.14 E-value=6.7e-06 Score=63.63 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=31.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~ 49 (294)
+||+|| |.+|.++|..++..+. ++.++|++++..+.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~ 40 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQG 40 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchh
Confidence 589999 9999999999998875 89999999887553
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.12 E-value=1.1e-05 Score=63.36 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=32.2
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIEN 49 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~ 49 (294)
-+||+|| |.+|+.+|..++..|+ ++.++|++++.++.
T Consensus 7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g 46 (154)
T d1pzga1 7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEG 46 (154)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchh
Confidence 4799999 9999999999888885 89999999987654
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.12 E-value=4e-06 Score=67.66 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=78.2
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
..-++|+|| |.+|+.+|..+...|.+|++||+++..
T Consensus 40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------------------------------------------ 77 (181)
T d1qp8a1 40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------------------------------ 77 (181)
T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------------------------------
T ss_pred ccCceEEEeccccccccceeeeeccccccccccccccc------------------------------------------
Confidence 344789999 999999999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+ ......++++.+++||+|+.++|-+.+.+.-+=++....++++++++
T Consensus 78 -------------------~-------------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailI 125 (181)
T d1qp8a1 78 -------------------G-------------PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFV 125 (181)
T ss_dssp -------------------S-------------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEE
T ss_pred -------------------c-------------ceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEE
Confidence 0 01224578889999999999999876544333355666789999997
Q ss_pred ecCC-C--CCHHHHHhhcC-CCCceeeeeec
Q psy13746 169 SSTS-S--FLPSVLSEHST-HRSQFIVAHPV 195 (294)
Q Consensus 169 s~tS-t--~~~~~ia~~l~-~~~~~ig~h~~ 195 (294)
|+| + +..+.+.+.+. ++....+...+
T Consensus 126 -N~~RG~ivd~~aL~~aL~~~~i~~aalDV~ 155 (181)
T d1qp8a1 126 -NVGRAEVLDRDGVLRILKERPQFIFASDVW 155 (181)
T ss_dssp -ECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred -eccccccccchhhhhhcccCcEEEEEEecC
Confidence 455 2 55556666665 33333455543
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.05 E-value=4.2e-05 Score=59.25 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=31.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
+||+|| |.+|+++|..++..|. ++.++|+++++++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~ 40 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVK 40 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhh
Confidence 699999 9999999999998774 8999999998765
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.04 E-value=3.9e-05 Score=58.11 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=35.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|+|.|+ |.+|+.+|..|.+.|++|+++|.|++.++++.+
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~ 41 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA 41 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhh
Confidence 578888 999999999999999999999999999887654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.03 E-value=4.8e-05 Score=59.81 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=32.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
-+||+|| |.+|+++|..++..|. ++.++|++++..+
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~ 59 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 59 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhH
Confidence 3699999 9999999999999997 8999999987764
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.02 E-value=2.5e-06 Score=68.06 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=39.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 56 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~ 56 (294)
|||+|+ |.||+++|..|++.||+|++|+|++++++...+.+.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~ 46 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR 46 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 579999 8999999999999999999999999999988887764
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.97 E-value=4.3e-06 Score=68.16 Aligned_cols=112 Identities=19% Similarity=0.127 Sum_probs=77.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.+|+.+|..+..-|.+|..||+....-.. ..
T Consensus 49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~--~~------------------------------------- 89 (193)
T d1mx3a1 49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE--RA------------------------------------- 89 (193)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH--HH-------------------------------------
T ss_pred CceEEEeccccccccceeeeeccccceeeccCcccccch--hh-------------------------------------
Confidence 3689999 999999999999999999999987543111 00
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.+ +....++++.++.||+|+.++|-+.+-+.-+=++....++++++++ |
T Consensus 90 ----------------~~--------------~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lI-N 138 (193)
T d1mx3a1 90 ----------------LG--------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLV-N 138 (193)
T ss_dssp ----------------HT--------------CEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEE-E
T ss_pred ----------------hc--------------cccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEE-e
Confidence 01 2345788888999999999999766543323345566789999987 6
Q ss_pred CCC---CCHHHHHhhcC-CCCceeeeee
Q psy13746 171 TSS---FLPSVLSEHST-HRSQFIVAHP 194 (294)
Q Consensus 171 tSt---~~~~~ia~~l~-~~~~~ig~h~ 194 (294)
+|- +.-+.+.+.+. .+....+...
T Consensus 139 ~sRG~ivde~aL~~aL~~~~i~~a~lDV 166 (193)
T d1mx3a1 139 TARGGLVDEKALAQALKEGRIRGAALDV 166 (193)
T ss_dssp CSCTTSBCHHHHHHHHHHTSEEEEEESC
T ss_pred cCCceEEcHHHHHHHHHcCCceEEEEEc
Confidence 662 45556666654 2333344443
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.95 E-value=2e-05 Score=60.83 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=28.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~ 47 (294)
+||+|| |.+|+.+|..++..|. ++.++|++++.+
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~ 39 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKA 39 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---C
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCcc
Confidence 589999 9999999999999886 899999999764
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.89 E-value=6.9e-06 Score=67.12 Aligned_cols=111 Identities=19% Similarity=0.177 Sum_probs=75.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.+|+.+|..+..-|.+|..||+........
T Consensus 43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~---------------------------------------- 82 (197)
T d1j4aa1 43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEK---------------------------------------- 82 (197)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH----------------------------------------
T ss_pred CCeEEEecccccchhHHHhHhhhcccccccCccccccccc----------------------------------------
Confidence 3689999 9999999999999999999999875431110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.+ ....++++.++.||+|+.++|-+.+.+.-+=++....++++++++ |
T Consensus 83 ----------------~~---------------~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lI-N 130 (197)
T d1j4aa1 83 ----------------KG---------------YYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIV-N 130 (197)
T ss_dssp ----------------TT---------------CBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEE-E
T ss_pred ----------------ce---------------eeeccccccccccccccccCCccccccccccHHHHhhhCCccEEE-e
Confidence 01 123578888999999999999766543322244455688999887 6
Q ss_pred CCC---CCHHHHHhhcC-CCCceeeeeec
Q psy13746 171 TSS---FLPSVLSEHST-HRSQFIVAHPV 195 (294)
Q Consensus 171 tSt---~~~~~ia~~l~-~~~~~ig~h~~ 195 (294)
+|- +.-+.+.+.+. ......+...+
T Consensus 131 ~sRG~ivde~aL~~aL~~~~i~~a~lDV~ 159 (197)
T d1j4aa1 131 VSRGPLVDTDAVIRGLDSGKIFGYAMDVY 159 (197)
T ss_dssp CSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred cCchhhhhhHHHHHHHhcccchheeeecc
Confidence 663 45556666554 33333444544
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.89 E-value=8.3e-06 Score=66.31 Aligned_cols=115 Identities=15% Similarity=0.096 Sum_probs=79.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.+|+.+|..+...|.+|..||+...........
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~------------------------------------- 89 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASY------------------------------------- 89 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHH-------------------------------------
T ss_pred ccceEEeecccchHHHHHHHHhhccccccccccccccchhhcc-------------------------------------
Confidence 4789999 9999999999999999999999876532211100
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+ .....++++.++.||+|+.++|-+.+-+.-+=++....++++++++ |
T Consensus 90 -----------------~--------------~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lI-N 137 (191)
T d1gdha1 90 -----------------Q--------------ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVV-N 137 (191)
T ss_dssp -----------------T--------------CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEE-E
T ss_pred -----------------c--------------ccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEE-e
Confidence 0 1334678889999999999999876544333345666789999987 6
Q ss_pred CCC---CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TSS---FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tSt---~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
+|- +.-+.+.+.+. ......+...+.
T Consensus 138 ~sRG~ivde~aL~~aL~~g~i~~a~lDV~~ 167 (191)
T d1gdha1 138 TARGDLVDNELVVAALEAGRLAYAGFDVFA 167 (191)
T ss_dssp CSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred cCCccchhhHHHHHHHHcCCceEEEEECCC
Confidence 763 45556666654 333444555443
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.89 E-value=6.6e-06 Score=66.48 Aligned_cols=114 Identities=20% Similarity=0.153 Sum_probs=78.4
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++++|+ |.+|+.+|..+..-|.+|..||+....-.....
T Consensus 43 ~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~------------------------------------- 85 (184)
T d1ygya1 43 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL------------------------------------- 85 (184)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHH-------------------------------------
T ss_pred cceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhhc-------------------------------------
Confidence 34689999 999999999999999999999987644221100
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+ +. ..++++.++.||+|+.++|-+.+-+.-+=++....++++++++
T Consensus 86 ------------------~--------------~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lI- 131 (184)
T d1ygya1 86 ------------------G--------------IE-LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIV- 131 (184)
T ss_dssp ------------------T--------------CE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE-
T ss_pred ------------------C--------------ce-eccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEE-
Confidence 1 12 2578888999999999999876644322245666789999987
Q ss_pred cCCC---CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 170 STSS---FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 170 ~tSt---~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
|+|- +.-+.+.+.+.. .....+...+.
T Consensus 132 N~sRG~iVde~aL~~aL~~~~i~~a~lDV~~ 162 (184)
T d1ygya1 132 NAARGGLVDEAALADAITGGHVRAAGLDVFA 162 (184)
T ss_dssp ECSCTTSBCHHHHHHHHHTSSEEEEEESSCS
T ss_pred EecchhhhhhHHHHHHHhcCcEeEEEEeCCC
Confidence 6662 455566666653 33344455443
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=1.9e-05 Score=64.24 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=34.5
Q ss_pred CCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 11 GGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 11 ~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
|.++||.|+ |.+|+.++..|+++||+|++++|+++++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~ 40 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL 40 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence 788999999 9999999999999999999999998774
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.85 E-value=7.1e-06 Score=64.78 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=35.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|| |.||+.+|..|++.||+|++|||+.++++...+
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~ 43 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA 43 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHh
Confidence 789999 999999999999999999999999998876544
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.85 E-value=0.00017 Score=57.25 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=27.6
Q ss_pred cceEEE--ccccHHHHH--HHHH----CCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAM--IFAS----AGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~--~~~~----~G~~V~~~d~~~~~~~~~~ 51 (294)
+||+|| |..|...+. .++. .+.++.++|+++++++...
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~ 48 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAIL 48 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHH
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHH
Confidence 599999 888876543 2333 2469999999999887543
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.82 E-value=6e-05 Score=59.21 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=33.6
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
.|+-.||+|| |.+|..+|..++..|. ++.++|++++.++
T Consensus 16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~ 58 (159)
T d2ldxa1 16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLR 58 (159)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHH
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhh
Confidence 4455689999 9999999999999886 8999999987754
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.80 E-value=1.7e-05 Score=64.11 Aligned_cols=115 Identities=10% Similarity=0.008 Sum_probs=79.4
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|+ |.+|+.+|..+...|.+|..||+....-.....
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~------------------------------------- 85 (188)
T d2naca1 43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE------------------------------------- 85 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH-------------------------------------
T ss_pred cccceeeccccccchhhhhhhhccCceEEEEeecccccccccc-------------------------------------
Confidence 34689999 999999999999999999999986533221110
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.+ +....++.+.+++||+|+.++|-+.+-+.-+=++....++++++|+
T Consensus 86 -----------------~~--------------~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lI- 133 (188)
T d2naca1 86 -----------------LN--------------LTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIV- 133 (188)
T ss_dssp -----------------HT--------------CEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEE-
T ss_pred -----------------cc--------------ccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEE-
Confidence 01 2445788889999999999999876543333355667789999987
Q ss_pred cCCC---CCHHHHHhhcCC-CCceeeeeec
Q psy13746 170 STSS---FLPSVLSEHSTH-RSQFIVAHPV 195 (294)
Q Consensus 170 ~tSt---~~~~~ia~~l~~-~~~~ig~h~~ 195 (294)
|+|- +..+.+.+.+.. +....+...+
T Consensus 134 N~aRG~ivd~~aL~~aL~~g~i~ga~lDV~ 163 (188)
T d2naca1 134 NTARGKLCDRDAVARALESGRLAGYAGDVW 163 (188)
T ss_dssp ECSCGGGBCHHHHHHHHHTTSEEEEEESCC
T ss_pred ecCchhhhhHHHHHHHHhCCCceeEEEeCC
Confidence 6663 555667666653 2233344433
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=4.1e-05 Score=60.18 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=66.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++++|+ |.+|+++|..++..|.+|+++|++|-..-++.-
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~--------------------------------------- 65 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAM--------------------------------------- 65 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH---------------------------------------
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhc---------------------------------------
Confidence 678888 999999999999999999999999955322210
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.| +. ...+++++..+|++|.|....-.+. .+-.+.+++++|++..+
T Consensus 66 ---------------dG--------------~~-v~~~~~a~~~adivvtaTGn~~vI~----~eh~~~MKdgaIL~N~G 111 (163)
T d1li4a1 66 ---------------EG--------------YE-VTTMDEACQEGNIFVTTTGCIDIIL----GRHFEQMKDDAIVCNIG 111 (163)
T ss_dssp ---------------TT--------------CE-ECCHHHHTTTCSEEEECSSCSCSBC----HHHHTTCCTTEEEEECS
T ss_pred ---------------Cc--------------eE-eeehhhhhhhccEEEecCCCccchh----HHHHHhccCCeEEEEec
Confidence 12 12 3467788999999999876533232 33345689999998544
Q ss_pred CC---CCHHHHHh
Q psy13746 172 SS---FLPSVLSE 181 (294)
Q Consensus 172 St---~~~~~ia~ 181 (294)
+. +.+..+.+
T Consensus 112 hfd~EId~~~L~~ 124 (163)
T d1li4a1 112 HFDVEIDVKWLNE 124 (163)
T ss_dssp SSTTSBCHHHHHH
T ss_pred cccceecHHHHhh
Confidence 42 45555554
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.73 E-value=4.2e-05 Score=59.95 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=61.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+++.|+ |-.|+++|..+...|.+|+++++||-..-++ .
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA--~-------------------------------------- 63 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA--V-------------------------------------- 63 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH--H--------------------------------------
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH--H--------------------------------------
Confidence 577777 9999999999999999999999999442211 1
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.+| +. ..+++++++.+|++|.++...-.+. .+..+.+++++|++..+
T Consensus 64 ------------------mdG----------f~-v~~~~~a~~~aDi~vTaTGn~~vI~----~~h~~~MKdgaIl~N~G 110 (163)
T d1v8ba1 64 ------------------MEG----------FN-VVTLDEIVDKGDFFITCTGNVDVIK----LEHLLKMKNNAVVGNIG 110 (163)
T ss_dssp ------------------TTT----------CE-ECCHHHHTTTCSEEEECCSSSSSBC----HHHHTTCCTTCEEEECS
T ss_pred ------------------hcC----------Cc-cCchhHccccCcEEEEcCCCCcccc----HHHHHHhhCCeEEEecc
Confidence 111 23 3577889999999999987643222 33345689999997433
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.68 E-value=0.00028 Score=54.30 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=29.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeCChHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~~~ 46 (294)
.||+|| |.+|+++|..++..|. ++.++|+++.+
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~ 38 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP 38 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHH
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccc
Confidence 389999 8999999999999886 79999998754
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=1.8e-05 Score=64.03 Aligned_cols=110 Identities=20% Similarity=0.152 Sum_probs=76.2
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|+ |.+|+.+|..+...|.+|..||+......
T Consensus 43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----------------------------------------- 81 (188)
T d1sc6a1 43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----------------------------------------- 81 (188)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC-----------------------------------------
T ss_pred cceEEEEeecccchhhhhhhcccccceEeeccccccchh-----------------------------------------
Confidence 34689999 99999999999999999999998642100
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.......++++.++.||+|+.++|-+.+-+.-+=++..+.++++++++
T Consensus 82 -------------------------------~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lI- 129 (188)
T d1sc6a1 82 -------------------------------GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLI- 129 (188)
T ss_dssp -------------------------------TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEE-
T ss_pred -------------------------------hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEE-
Confidence 001234678889999999999999876543323345556688999987
Q ss_pred cCCC---CCHHHHHhhcCC-CCceeeeee
Q psy13746 170 STSS---FLPSVLSEHSTH-RSQFIVAHP 194 (294)
Q Consensus 170 ~tSt---~~~~~ia~~l~~-~~~~ig~h~ 194 (294)
|+|- +.-+.+.+.+.. .....+...
T Consensus 130 N~aRG~lvde~aL~~aL~~~~~~~a~lDV 158 (188)
T d1sc6a1 130 NASRGTVVDIPALADALASKHLAGAAIDV 158 (188)
T ss_dssp ECSCSSSBCHHHHHHHHHTTSEEEEEEEC
T ss_pred EcCcHHhhhhHHHHHHHHcCCceEEEEec
Confidence 6652 455567666643 333344443
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.62 E-value=0.00021 Score=55.02 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=29.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeCChHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~~~ 46 (294)
+||+|| |.+|+++|..++..|. ++.++|++++.
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~ 38 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSI 38 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhh
Confidence 479999 8999999999999884 99999998643
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.59 E-value=0.0001 Score=57.76 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=35.1
Q ss_pred CccceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
+-++|.|| |.||..++.+|...|+ +++++.|+.++.+...+
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~ 66 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELAR 66 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHH
Confidence 44789999 9999999999999998 69999999888765543
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.58 E-value=0.00069 Score=52.33 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=30.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~ 49 (294)
.||+|| |.+|+.+|..++..+. ++.++|++++..+.
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g 42 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHG 42 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCccee
Confidence 489999 9999999998888774 89999999877653
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.51 E-value=1.4e-05 Score=65.41 Aligned_cols=98 Identities=22% Similarity=0.233 Sum_probs=70.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.+|+.+|..+..-|.+|+.||+.+....
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~------------------------------------------- 82 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD------------------------------------------- 82 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC-------------------------------------------
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhh-------------------------------------------
Confidence 689999 99999999999999999999998653200
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
. ..+. ..++++.++.||+|+.++|-+.+-+.-+=++....++++++++ |+
T Consensus 83 ------------------~----------~~~~-~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lI-N~ 132 (199)
T d1dxya1 83 ------------------H----------PDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVI-NT 132 (199)
T ss_dssp ------------------C----------TTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEE-EC
T ss_pred ------------------h----------cchh-HHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEE-ec
Confidence 0 0012 2468888899999999999876643322244555688999987 66
Q ss_pred CC---CCHHHHHhhcC
Q psy13746 172 SS---FLPSVLSEHST 184 (294)
Q Consensus 172 St---~~~~~ia~~l~ 184 (294)
|- +.-+.+.+.+.
T Consensus 133 aRG~vvde~aL~~aL~ 148 (199)
T d1dxya1 133 ARPNLIDTQAMLSNLK 148 (199)
T ss_dssp SCTTSBCHHHHHHHHH
T ss_pred ccHhhhhhHHHHHHHh
Confidence 63 44456666664
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.50 E-value=0.00054 Score=53.63 Aligned_cols=37 Identities=16% Similarity=-0.004 Sum_probs=28.0
Q ss_pred cceEEE--ccccHHHHHHHHH--C----CCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFAS--A----GYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~--~----G~~V~~~d~~~~~~~~~ 50 (294)
+||+|| |..|.+++..... . +.++.++|+++++++..
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~ 45 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIV 45 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHH
Confidence 489999 8889888864332 2 35899999999987644
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.42 E-value=6.8e-05 Score=59.14 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=35.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
-+|.|| |+.|.+=+.....-|.+|+++|++++++++.+..
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~ 74 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL 74 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHh
Confidence 478899 9999999999999999999999999998876543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=97.36 E-value=0.00037 Score=58.42 Aligned_cols=70 Identities=20% Similarity=0.107 Sum_probs=53.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-||+++|..|++.|++|.+.|++++.++++.+.+.. ...+..+..|+.+ +
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~------------------~~~~~~~~~Dv~~~~ 67 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT------------------PDQIQFFQHDSSDED 67 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC------------------TTTEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC------------------CCcEEEEEccCCCHH
Confidence 588888 6699999999999999999999999998887765431 1234556678877 6
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 68 ~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 68 GWTKLFDATEKAF 80 (251)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6777777666655
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.35 E-value=0.0017 Score=51.03 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=26.0
Q ss_pred cceEEE--ccccHHHHH--HHHH-CC---CeEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAM--IFAS-AG---YKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~--~~~~-~G---~~V~~~d~~~~~~~~~ 50 (294)
.||+|| |..|.+.+. .++. .. -++.++|+++++++..
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~ 48 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRI 48 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHH
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHH
Confidence 589999 777776443 2222 22 3899999999987743
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.32 E-value=0.00049 Score=54.19 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=68.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH-HHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.-|++-|.+|...|.+|++--|.... .+++++
T Consensus 17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~-------------------------------------- 58 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEA-------------------------------------- 58 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHH--------------------------------------
T ss_pred CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhh--------------------------------------
Confidence 689999 999999999999999999998876532 232221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH-HHhcccCCCeEEEe
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR-AIDIFMSSNTILSS 169 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~-~l~~~~~~~~ii~s 169 (294)
.| +. .-+++||++.+|+|+..+|+.. -.++++ ++.++++++..+..
T Consensus 59 ----------------~G--------------f~-v~~~~eA~~~aDiim~L~PD~~--q~~vy~~~I~p~lk~g~~L~F 105 (182)
T d1np3a2 59 ----------------HG--------------LK-VADVKTAVAAADVVMILTPDEF--QGRLYKEEIEPNLKKGATLAF 105 (182)
T ss_dssp ----------------TT--------------CE-EECHHHHHHTCSEEEECSCHHH--HHHHHHHHTGGGCCTTCEEEE
T ss_pred ----------------hc--------------cc-cccHHHHhhhcCeeeeecchHH--HHHHHHHhhhhhcCCCcEEEE
Confidence 22 22 3567889999999999999765 347785 79999999988864
Q ss_pred cCCCCC
Q psy13746 170 STSSFL 175 (294)
Q Consensus 170 ~tSt~~ 175 (294)
+.+..
T Consensus 106 -aHGfn 110 (182)
T d1np3a2 106 -AHGFS 110 (182)
T ss_dssp -SCCHH
T ss_pred -eccce
Confidence 44443
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.28 E-value=0.0014 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=18.7
Q ss_pred eeeccChhhhccCCcEEEEcCC
Q psy13746 123 ISGTPVLRECLEDAIFIQESVP 144 (294)
Q Consensus 123 i~~~~~~~~a~~~aDlVieavp 144 (294)
+..++|..+++++||+||.+..
T Consensus 65 ~~~~td~~~al~gaDvVv~ta~ 86 (169)
T d1s6ya1 65 IHLTLDRRRALDGADFVTTQFR 86 (169)
T ss_dssp EEEESCHHHHHTTCSEEEECCC
T ss_pred eeecCCchhhcCCCCEEEEccc
Confidence 5567888888999999999985
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=97.28 E-value=0.00041 Score=57.88 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=51.4
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|++|.+.||+++.++++.+.+ +...+.+|+.+ +
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~----------------------~~~~~~~Dv~~~~ 62 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----------------------GAHPVVMDVADPA 62 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----------------------TCEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----------------------CCeEEEEecCCHH
Confidence 377777 56999999999999999999999999988776543 23446678877 6
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 63 ~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 63 SVERGFAEALAHL 75 (242)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6777777666655
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.24 E-value=0.00049 Score=57.76 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=38.1
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
+||++| +-+|+++|..|++.|++|.+.||+++.++++.+.+.
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~ 46 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN 46 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 589888 679999999999999999999999999998887765
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00092 Score=51.29 Aligned_cols=32 Identities=34% Similarity=0.590 Sum_probs=26.5
Q ss_pred cceEEE---ccccHHHHHHHHH-C--CCeEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFAS-A--GYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~-~--G~~V~~~d~~~~ 45 (294)
+||+|| |.+|+++|..++. . +.++.++|+.+.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~ 38 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV 38 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc
Confidence 589999 8999999998764 3 469999999764
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.00055 Score=57.37 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=51.8
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-||+++|..|++.|++|.+.||+++.+++..+.+. +...+..|+.+ +
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~---------------------~~~~~~~Dvs~~~ 64 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP---------------------GAVFILCDVTQED 64 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT---------------------TEEEEECCTTSHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC---------------------CCeEEEccCCCHH
Confidence 477788 679999999999999999999999999887766533 23455678877 6
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 65 ~v~~~~~~~~~~~ 77 (250)
T d1ydea1 65 DVKTLVSETIRRF 77 (250)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6766666665555
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.11 E-value=0.0032 Score=47.92 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=27.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~ 44 (294)
.||+|| |.+|+.+|..++..|. ++.++|++.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~ 36 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPD 36 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGG
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 389999 8999999999999886 899999854
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0013 Score=56.33 Aligned_cols=79 Identities=18% Similarity=0.124 Sum_probs=54.1
Q ss_pred CCccceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 11 GGFYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 11 ~~~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
+--.|+++| +-+|+++|..|++.|++|.+.||+++.++++.+.+.... +......+..+-.|++
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~------------~~~~~~~~~~~~~Dvs 76 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANL------------PPTKQARVIPIQCNIR 76 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTS------------CTTCCCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhh------------ccccCceEEEEeccCC
Confidence 334688888 679999999999999999999999999998877765211 1111122333455666
Q ss_pred h-HHHHHHHHHHHHHH
Q psy13746 87 S-EQIENAKNTIQHTL 101 (294)
Q Consensus 87 ~-~~~~~~~~~~~~~l 101 (294)
+ +.+++..+.+.+.+
T Consensus 77 ~~~~v~~~~~~~~~~~ 92 (297)
T d1yxma1 77 NEEEVNNLVKSTLDTF 92 (297)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 5 55666666555444
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=97.08 E-value=0.001 Score=53.15 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=35.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++|.|. |.+|+.+|..|++.|.+|++.+|+++++++..+.+.
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~ 68 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN 68 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence 455555 889999999999999999999999999988776654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.08 E-value=0.00084 Score=56.27 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=51.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.||++| +-||+++|..|++.|++|.++||+++.+++..+.+... ...+.....|+.+ +
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~-----------------g~~~~~~~~Dvs~~~ 64 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-----------------GVEADGRTCDVRSVP 64 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----------------TCCEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------CCcEEEEEeecCCHH
Confidence 479999 57999999999999999999999999999888776521 0113344567666 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 65 ~v~~~~~~~~~~~ 77 (257)
T d2rhca1 65 EIEALVAAVVERY 77 (257)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 5666555554444
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.08 E-value=0.001 Score=54.18 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=36.8
Q ss_pred ChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCH
Q psy13746 128 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP 176 (294)
Q Consensus 128 ~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~ 176 (294)
+..||++.+|+|+..+|+..+ .+++++|.++++++..+.. +-+..+
T Consensus 104 ~v~EAv~~ADiVmiLlPDe~Q--~~vy~~I~p~Lk~G~~L~F-aHGFnI 149 (226)
T d1qmga2 104 DMWETISGSDLVLLLISDSAQ--ADNYEKVFSHMKPNSILGL-SHGFLL 149 (226)
T ss_dssp EHHHHHHTCSEEEECSCHHHH--HHHHHHHHHHSCTTCEEEE-SSSHHH
T ss_pred CHHHHHhhCCEEEEecchHHH--HHHHHHHHHhcCCCceeee-cchhhh
Confidence 567789999999999998764 4788999999999998864 334443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.06 E-value=0.00087 Score=56.41 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=54.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|++|.+.||+++.++++.+.+.... .....+.....|+.+ +
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~--------------~~~~~~~~~~~Dvt~~~ 70 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG--------------VSEQNVNSVVADVTTDA 70 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCGGGEEEEECCTTSHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CCcCceEEEEccCCCHH
Confidence 588888 679999999999999999999999999998887765210 011234556678866 6
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 71 ~v~~~~~~~~~~~ 83 (264)
T d1spxa_ 71 GQDEILSTTLGKF 83 (264)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666655544
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.03 E-value=0.00091 Score=56.09 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=50.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|++|.+.||+++.++++.+.+. .....+.+|+.+ +
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~--------------------~~~~~~~~Dvt~~~ 64 (256)
T d1k2wa_ 5 GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG--------------------PAACAIALDVTDQA 64 (256)
T ss_dssp TEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC--------------------TTEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--------------------CceEEEEeeCCCHH
Confidence 377888 679999999999999999999999999888766542 113345667776 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 65 ~v~~~~~~~~~~~ 77 (256)
T d1k2wa_ 65 SIDRCVAELLDRW 77 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666666555544
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=97.02 E-value=0.00079 Score=56.62 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=51.2
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-||+++|..|++.|++|.++||+++.++++.+.+... ......+..|+.+ +
T Consensus 8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~-----------------g~~~~~~~~Dv~~~~ 70 (259)
T d2ae2a_ 8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK-----------------GFKVEASVCDLSSRS 70 (259)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----------------TCEEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------CCCceEEEeeCCCHH
Confidence 478888 66999999999999999999999999999888776521 1112344567765 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+++.+.+
T Consensus 71 ~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 71 ERQELMNTVANHF 83 (259)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 5666555544433
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00093 Score=56.48 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=54.0
Q ss_pred cceEEE----ccccHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 14 YPDGII----GLIGQAWAMIFASA-GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
++|++| +-+|..+|..|++. |++|++++|++++++++.+.++.. .....+..+|+++
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~-----------------~~~~~~~~~Dvs~~ 65 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE-----------------GLSPRFHQLDIDDL 65 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT-----------------TCCCEEEECCTTCH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc-----------------CCcEEEEEEecCCH
Confidence 689999 67899999999985 899999999999999888877521 1124566778877
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQHTL 101 (294)
Q Consensus 88 ~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 66 ~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 66 QSIRALRDFLRKEY 79 (275)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 56666666655544
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=97.01 E-value=0.0014 Score=55.24 Aligned_cols=70 Identities=26% Similarity=0.255 Sum_probs=51.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|++|.+.|++++.++++.+.+.. ......+.+|+.+ +
T Consensus 6 gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~------------------~~~~~~~~~Dv~~~~ 67 (268)
T d2bgka1 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS------------------PDVISFVHCDVTKDE 67 (268)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC------------------TTTEEEEECCTTCHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC------------------CCceEEEEccCCCHH
Confidence 577888 6799999999999999999999999999887766531 1123345568776 6
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 68 ~v~~~~~~~~~~~ 80 (268)
T d2bgka1 68 DVRNLVDTTIAKH 80 (268)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655544
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.01 E-value=0.0013 Score=55.52 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=53.8
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-||+++|..|++.|++|.+.||+++.++++.+.+.+.. .....+.....|+.+ +
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~--------------~~~~~~~~~~~Dvs~~~ 70 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG--------------VSEKQVNSVVADVTTED 70 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--------------CCGGGEEEEECCTTSHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CCCCceEEEEccCCCHH
Confidence 477888 779999999999999999999999999998887765210 001124456678776 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.++...+.+.+.+
T Consensus 71 ~v~~~~~~~~~~~ 83 (272)
T d1xkqa_ 71 GQDQIINSTLKQF 83 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666655554
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.0013 Score=55.09 Aligned_cols=73 Identities=19% Similarity=0.089 Sum_probs=53.8
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|++|.++++++++++++.+.+.+.. ...-+..+.+|+.+ +
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~---------------~~~~~~~~~~Dls~~~ 74 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG---------------YPGTLIPYRCDLSNEE 74 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---------------CSSEEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---------------CCceEEEEEccCCCHH
Confidence 478888 789999999999999999999999999999887776310 00113345678777 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 75 ~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 75 DILSMFSAIRSQH 87 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5666666655554
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00092 Score=55.67 Aligned_cols=68 Identities=19% Similarity=0.139 Sum_probs=50.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-||+++|..|++.|++|.+.||+++.+++..+.+.. ....+..|+.+ +
T Consensus 4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~--------------------~~~~~~~Dv~~~~ 63 (243)
T d1q7ba_ 4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA--------------------NGKGLMLNVTDPA 63 (243)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG--------------------GEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC--------------------CCcEEEEEecCHH
Confidence 478888 6899999999999999999999999999887765531 12345567766 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 64 ~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 64 SIESVLEKIRAEF 76 (243)
T ss_dssp HHHHHHHHHHHHT
T ss_pred Hhhhhhhhhhccc
Confidence 6666666554444
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.98 E-value=0.0011 Score=55.24 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=51.3
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|++|.+.||++++++++.+.+.. ....+-.|+.+ +
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--------------------~~~~~~~Dv~~~~ 65 (244)
T d1nffa_ 6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD--------------------AARYVHLDVTQPA 65 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG--------------------GEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhC--------------------cceEEEeecCCHH
Confidence 478888 6699999999999999999999999998887765431 12344567766 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+++.+.+
T Consensus 66 ~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 66 QWKAAVDTAVTAF 78 (244)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665555
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.98 E-value=0.0018 Score=54.38 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=52.1
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|++|.++|++++.+++..+.+... ...+....+|+++ +
T Consensus 8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~-----------------~~~~~~~~~Dv~~~~ 70 (259)
T d1xq1a_ 8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK-----------------GFQVTGSVCDASLRP 70 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----------------TCCEEEEECCTTSHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------CCceEEEeccCCCHH
Confidence 478888 67999999999999999999999999999887776521 1123445567766 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 71 ~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 71 EREKLMQTVSSMF 83 (259)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666666555444
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=96.96 E-value=0.0014 Score=55.53 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=49.1
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| +-||+++|..|++.|++|.+.||+++++++..+.... .+.....|+.+ +.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~--------------------~~~~~~~Dv~~~~~ 65 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGD--------------------NVLGIVGDVRSLED 65 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--------------------GEEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC--------------------CeeEEecccccHHH
Confidence 77777 6799999999999999999999999998876654321 13345556666 55
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
+++..+.+.+.+
T Consensus 66 ~~~~~~~~~~~~ 77 (276)
T d1bdba_ 66 QKQAASRCVARF 77 (276)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666555544
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=96.96 E-value=0.0015 Score=54.84 Aligned_cols=73 Identities=29% Similarity=0.290 Sum_probs=52.7
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-||+++|..|++.|++|.+.|++++.+++..+.+....+ ...+-.+..|+.+ +
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~---------------~~~~~~~~~Dvt~~~ 68 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP---------------DAEVLTTVADVSDEA 68 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT---------------TCCEEEEECCTTSHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC---------------CCeEEEEeccCCCHH
Confidence 477888 5799999999999999999999999999887776652110 1112334567766 6
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
++++..+.+.+.+
T Consensus 69 ~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 69 QVEAYVTATTERF 81 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6777766665555
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.93 E-value=0.0015 Score=54.56 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=51.5
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCcee--EEeecch
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKV--SLYDVLS 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~d~~~ 87 (294)
.|+++| +-||+++|..|++.|++|.+.|++++.+++..+.+.+. .|.++ +..|+.+
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~------------------~g~~~~~~~~Dv~~ 66 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK------------------YGVETMAFRCDVSN 66 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH------------------HCCCEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH------------------hCCcEEEEEccCCC
Confidence 477777 67999999999999999999999999988877665421 13333 4457766
Q ss_pred -HHHHHHHHHHHHHH
Q psy13746 88 -EQIENAKNTIQHTL 101 (294)
Q Consensus 88 -~~~~~~~~~~~~~l 101 (294)
+.++++.+.+.+.+
T Consensus 67 ~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 67 YEEVKKLLEAVKEKF 81 (251)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 56666666655544
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.93 E-value=0.0012 Score=55.14 Aligned_cols=69 Identities=19% Similarity=0.137 Sum_probs=51.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCC--ceeEEeecch
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAG--YKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~d~~~ 87 (294)
.||++| +-+|+++|..|++.|++|.++|++++.++++.+.+.. .| ...+..|+.+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~-------------------~g~~~~~~~~Dvt~ 70 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS-------------------FGYESSGYAGDVSK 70 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT-------------------TTCCEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-------------------cCCcEEEEEccCCC
Confidence 589988 6799999999999999999999999999988877652 12 2334556666
Q ss_pred -HHHHHHHHHHHHHH
Q psy13746 88 -EQIENAKNTIQHTL 101 (294)
Q Consensus 88 -~~~~~~~~~~~~~l 101 (294)
+.+++..+++.+.+
T Consensus 71 ~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 71 KEEISEVINKILTEH 85 (251)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 55666666554444
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=96.92 E-value=0.0018 Score=54.30 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=52.1
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|++|.+.|++++.++++.+.+... ...+..+.+|+.+ +
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~-----------------g~~~~~~~~Dv~~~~ 67 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK-----------------GVEARSYVCDVTSEE 67 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-----------------TSCEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------CCcEEEEEccCCCHH
Confidence 477888 67999999999999999999999999999888776510 0113345567666 6
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 68 ~v~~~~~~~~~~~ 80 (260)
T d1zema1 68 AVIGTVDSVVRDF 80 (260)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666655555
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.92 E-value=0.0014 Score=55.48 Aligned_cols=74 Identities=23% Similarity=0.241 Sum_probs=54.4
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|++|.+.||+++.++++.+.+.... .....+.....|+.+ +
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~--------------~~~~~~~~~~~Dv~~~~ 69 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG--------------VPAEKINAVVADVTEAS 69 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCGGGEEEEECCTTSHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--------------CCCcceEEEEeeCCCHH
Confidence 477888 669999999999999999999999999998887765210 001124456678777 6
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.++++.+.+.+.+
T Consensus 70 ~v~~~~~~~~~~~ 82 (274)
T d1xhla_ 70 GQDDIINTTLAKF 82 (274)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6777777665555
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.00072 Score=56.33 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=43.2
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|+++| +-+|+++|..|++.|++|.+.||+++.++++.+.+. +.....+|+.+.
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~---------------------~~~~~~~Dv~d~ 64 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP---------------------GIEPVCVDLGDW 64 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST---------------------TCEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---------------------CCeEEEEeCCCH
Confidence 66777 789999999999999999999999999887765432 355667788874
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0019 Score=53.95 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=51.5
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
|+++| +-+|+++|..|++.|++|.+.||+++.++++.+.+.... ....+....+|+.+ +.
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~~Dv~~~~~ 68 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF---------------EPQKTLFIQCDVADQQQ 68 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS---------------CGGGEEEEECCTTSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc---------------CCCcEEEEEeecCCHHH
Confidence 77888 669999999999999999999999999988777654210 01123445568777 55
Q ss_pred HHHHHHHHHHHH
Q psy13746 90 IENAKNTIQHTL 101 (294)
Q Consensus 90 ~~~~~~~~~~~l 101 (294)
++...+.+.+.+
T Consensus 69 v~~~~~~~~~~~ 80 (254)
T d2gdza1 69 LRDTFRKVVDHF 80 (254)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 666666555444
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.83 E-value=0.00094 Score=55.58 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=34.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|+++| +-+|+++|..|++.|++|.+.||+++.++++.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 48 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE 48 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 67777 6799999999999999999999999988876654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.002 Score=53.92 Aligned_cols=71 Identities=23% Similarity=0.236 Sum_probs=52.3
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|++|.+.|++++.++++.+.+.... .-+....+|+.+ +
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-----------------~~~~~~~~Dvs~~~ 73 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-----------------GQAFACRCDITSEQ 73 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-----------------CCEEEEECCTTCHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-----------------CcEEEEEccCCCHH
Confidence 388888 679999999999999999999999999998887765210 112334567766 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 74 ~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 74 ELSALADFAISKL 86 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5666666555544
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.78 E-value=0.0046 Score=47.55 Aligned_cols=46 Identities=11% Similarity=-0.061 Sum_probs=31.6
Q ss_pred CeeeccChhhhccCCcEEEEcCCc--------------chHHHHHHHHHHhcccCCCeEE
Q psy13746 122 LISGTPVLRECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.+...++..++++++|+||.+... +..+-+++..++.++++...++
T Consensus 66 ~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~i 125 (154)
T d5mdha1 66 DVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKV 125 (154)
T ss_dssp EEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEE
T ss_pred ccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEE
Confidence 345566777789999999997532 1234456667788888877643
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=96.75 E-value=0.002 Score=53.39 Aligned_cols=69 Identities=19% Similarity=0.151 Sum_probs=50.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCe-------EEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCcee--
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYK-------VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKV-- 80 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~-------V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v-- 80 (294)
++|++| +-+|+++|..|++.|++ |.+++++++.+++..+.+.. .|.++
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~-------------------~g~~~~~ 61 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA-------------------EGALTDT 61 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT-------------------TTCEEEE
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHh-------------------cCCcEEE
Confidence 467777 67999999999999997 99999999999988776641 23333
Q ss_pred EEeecch-HHHHHHHHHHHHHH
Q psy13746 81 SLYDVLS-EQIENAKNTIQHTL 101 (294)
Q Consensus 81 ~~~d~~~-~~~~~~~~~~~~~l 101 (294)
+.+|+.+ +++++..+.+.+.+
T Consensus 62 ~~~Dvt~~~~v~~~~~~~~~~~ 83 (240)
T d2bd0a1 62 ITADISDMADVRRLTTHIVERY 83 (240)
T ss_dssp EECCTTSHHHHHHHHHHHHHHT
T ss_pred EEecCCCHHHHHHHHHHHHHHc
Confidence 3457776 55666666554444
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=96.73 E-value=0.0027 Score=53.91 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=37.1
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|+++| |.+|+++|..|++.|++|++.||+++++++..+.+.
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~ 70 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQIS 70 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence 78888 789999999999999999999999999888777664
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=96.72 E-value=0.0021 Score=53.83 Aligned_cols=68 Identities=22% Similarity=0.168 Sum_probs=49.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-||+++|..|++.|++|.+.||+++++++..+.+. ........|+.+ +
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dv~~~~ 64 (254)
T d1hdca_ 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG--------------------DAARYQHLDVTIEE 64 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG--------------------GGEEEEECCTTCHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--------------------CceEEEEcccCCHH
Confidence 467777 679999999999999999999999998887655432 113445677766 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 65 ~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 65 DWQRVVAYAREEF 77 (254)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655544
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.70 E-value=0.0099 Score=46.72 Aligned_cols=48 Identities=19% Similarity=-0.035 Sum_probs=33.2
Q ss_pred cCeeeccChhhhccCCcEEEEcCCc--------------chHHHHHHHHHHhcccCCCeEEE
Q psy13746 121 GLISGTPVLRECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 121 ~~i~~~~~~~~a~~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.....+++..++++++|+||.+.-. +..+-+++...+.++++++++|.
T Consensus 86 ~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vl 147 (175)
T d7mdha1 86 REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVL 147 (175)
T ss_dssp EEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred cCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEE
Confidence 3455667777789999999997622 22334556677888888887554
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.0027 Score=52.73 Aligned_cols=71 Identities=20% Similarity=0.183 Sum_probs=51.7
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+.+|..|++.|++|.++||+++++++..+.+... ........+|+++ +
T Consensus 7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~-----------------~~~~~~~~~Dvs~~~ 69 (244)
T d1yb1a_ 7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL-----------------GAKVHTFVVDCSNRE 69 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----------------TCCEEEEECCTTCHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------CCcEEEEEeeCCCHH
Confidence 377777 67999999999999999999999999999888776521 0123455677777 4
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 70 ~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 70 DIYSSAKKVKAEI 82 (244)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 5555555544433
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=96.69 E-value=0.0027 Score=53.19 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=36.7
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.|+++| +-||+++|..|++.|++|.+.+|+++.++++.+.+.
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~ 51 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR 51 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 356666 789999999999999999999999999998877665
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.64 E-value=0.0031 Score=49.22 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=34.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |-.|++++..|.+.|. +|++++|++++.+...+
T Consensus 18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~ 59 (167)
T d1npya1 18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAA 59 (167)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHH
Confidence 689999 9999999999999997 89999999988765543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=96.59 E-value=0.0018 Score=54.19 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=50.1
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|++|.+.|++++.+++..+.+.+. | ......+..|+.+ +
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~---~-------------g~~~~~~~~Dv~~~~ 72 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE---F-------------GVKTKAYQCDVSNTD 72 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH---H-------------TCCEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH---h-------------CCceEEEEccCCCHH
Confidence 478888 67999999999999999999999999888777665421 1 0112334556665 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 73 ~v~~~~~~~~~~~ 85 (260)
T d1h5qa_ 73 IVTKTIQQIDADL 85 (260)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
Confidence 5666666554433
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=96.59 E-value=0.0028 Score=52.44 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=48.5
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-+|+++|..|++.|++|++.+|+.+++++..+.+. ..+-.+..|+++ +
T Consensus 5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~Dls~~~ 64 (241)
T d2a4ka1 5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--------------------AEAIAVVADVSDPK 64 (241)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--------------------SSEEEEECCTTSHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--------------------CceEEEEecCCCHH
Confidence 366777 779999999999999999999999998876655321 112234456666 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 65 ~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 65 AVEAVFAEALEEF 77 (241)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5666666665555
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=96.57 E-value=0.0037 Score=52.09 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=50.2
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-||+++|..|++.|++|.+.|++++.+++..+.+.. ..-.+-.|+.+ +
T Consensus 6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~Dv~~~~ 65 (253)
T d1hxha_ 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGE--------------------RSMFVRHDVSSEA 65 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCT--------------------TEEEECCCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC--------------------CeEEEEeecCCHH
Confidence 478888 5699999999999999999999999998887665431 11233456665 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 66 ~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 66 DWTLVMAAVQRRL 78 (253)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665555
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.0042 Score=48.49 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=35.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
++|.|+ |-.+++++..|.+.|.+|++++|++++.+...+.
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~ 60 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKL 60 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHH
Confidence 688888 8889999999999999999999999988765543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=96.56 E-value=0.0036 Score=52.06 Aligned_cols=65 Identities=26% Similarity=0.190 Sum_probs=48.1
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-||+++|..|++.|++|.+.|++++..+.+++ + +...+-+|+.+ +
T Consensus 5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~-~----------------------~~~~~~~Dv~~~~ 61 (248)
T d2d1ya1 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA-I----------------------GGAFFQVDLEDER 61 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH-H----------------------TCEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-c----------------------CCeEEEEeCCCHH
Confidence 477778 679999999999999999999999887554332 1 23445678876 6
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
++++..+.+.+.+
T Consensus 62 ~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 62 ERVRFVEEAAYAL 74 (248)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6777777665555
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.025 Score=42.78 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=32.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
.+|.|+ |.+|..++..|...|++|+++|.+++...+..
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~ 43 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQL 43 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHH
Confidence 367778 99999999999999999999999998655433
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.48 E-value=0.012 Score=45.42 Aligned_cols=39 Identities=26% Similarity=0.156 Sum_probs=34.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|...++.+...|.+|+++|+++++++.+++
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~ 68 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN 68 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH
Confidence 478788 999999998888899999999999999887765
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=96.46 E-value=0.005 Score=51.40 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=49.5
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCcee--EEeecc
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVL-SEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKV--SLYDVL 86 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~d~~ 86 (294)
.|+++| +-||+++|..|++.|++|.+.+++ ++.+++..+.+... .|.++ +-.|+.
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~------------------~g~~~~~~~~Dv~ 65 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ------------------HGVKVLYDGADLS 65 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHH------------------HTSCEEEECCCTT
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHh------------------cCCcEEEEECCCC
Confidence 578888 669999999999999999999997 56677666555421 13333 345776
Q ss_pred h-HHHHHHHHHHHHHH
Q psy13746 87 S-EQIENAKNTIQHTL 101 (294)
Q Consensus 87 ~-~~~~~~~~~~~~~l 101 (294)
+ +++++..+++.+.+
T Consensus 66 ~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 66 KGEAVRGLVDNAVRQM 81 (260)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 6 66666666665555
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.0052 Score=48.50 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=34.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~ 53 (294)
++|.|+ |-+|++++..++..|. ++++++|+++.++++...
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l 61 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF 61 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHH
Confidence 688888 9999999999999887 799999999988876543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.40 E-value=0.0083 Score=42.32 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=32.6
Q ss_pred CCCCCCccceEEE--cccc-HHHHHHHHHCCCeEEEEeCChHH
Q psy13746 7 FPAQGGFYPDGII--GLIG-QAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 7 ~~~~~~~~~i~ii--G~mG-~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+|.-...++|-|| |-.| +++|+.|.+.|++|+++|+....
T Consensus 2 ~~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~ 44 (96)
T d1p3da1 2 IPEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGV 44 (96)
T ss_dssp CCCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSH
T ss_pred CccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCCh
Confidence 3555567899999 7777 66799999999999999997544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.40 E-value=0.00079 Score=53.54 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=34.7
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+|.|| |+.|..=+.....-|..|+++|++++++++.++.
T Consensus 31 ~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l 71 (183)
T d1l7da1 31 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESL 71 (183)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHT
T ss_pred EEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh
Confidence 78888 9999999988889999999999999998877653
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.39 E-value=0.0086 Score=45.94 Aligned_cols=47 Identities=13% Similarity=0.003 Sum_probs=31.7
Q ss_pred eeeccChhhhccCCcEEEEcCCc--------------chHHHHHHHHHHhcccCCCeEEEe
Q psy13746 123 ISGTPVLRECLEDAIFIQESVPE--------------ILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 123 i~~~~~~~~a~~~aDlVieavpe--------------~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
...+++..++++++|+||.+.-. +..+-+++..++.++++++.++..
T Consensus 68 ~~~~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~viv 128 (154)
T d1y7ta1 68 LEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLV 128 (154)
T ss_dssp EEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred cccCCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 45556666689999999997621 223345566678888888876653
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=96.37 E-value=0.0064 Score=50.42 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=47.2
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.|+++| | -+|+++|..|++.|++|.+.+++++..+.+++.... ......+-.|+.+
T Consensus 8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~------------------~~~~~~~~~D~~~ 69 (256)
T d1ulua_ 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEA------------------LGGALLFRADVTQ 69 (256)
T ss_dssp TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH------------------TTCCEEEECCTTC
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhc------------------cCcccccccccCC
Confidence 477788 5 499999999999999999999998766655443221 0123345567666
Q ss_pred -HHHHHHHHHHHHHH
Q psy13746 88 -EQIENAKNTIQHTL 101 (294)
Q Consensus 88 -~~~~~~~~~~~~~l 101 (294)
+.+++..+.+.+.+
T Consensus 70 ~~~v~~~~~~~~~~~ 84 (256)
T d1ulua_ 70 DEELDALFAGVKEAF 84 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 55666666555544
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.19 E-value=0.0058 Score=47.79 Aligned_cols=41 Identities=10% Similarity=0.004 Sum_probs=35.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|+ |-++++++..|.+.+.+|++++|++++.+...+.+
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~ 61 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERF 61 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHH
Confidence 578888 99999999999998889999999998887765543
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0076 Score=46.45 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=26.8
Q ss_pred cceEEE--ccccHHH-HHHHHH-CCCeE-EEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAW-AMIFAS-AGYKV-SLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~i-A~~~~~-~G~~V-~~~d~~~~~~~~~~ 51 (294)
.||||| |.||+.. ...+.. .++++ .++|+++++.+...
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~ 44 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPIC 44 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhh
Confidence 379999 8999864 445554 36665 58999998866543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.02 Score=44.23 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=34.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|...++.+...|. +|+++|+++++++.+++
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~ 69 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE 69 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH
Confidence 578888 9999999988888998 79999999999987754
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0093 Score=49.88 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=36.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.|+++| +-||+++|..|++.|++|++.+|+++.++++.+.+.
T Consensus 14 GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~ 59 (269)
T d1xu9a_ 14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCL 59 (269)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh
Confidence 477888 679999999999999999999999999998776544
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=96.07 E-value=0.012 Score=49.10 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=47.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHhhhhhhhhcccccCCCCCccCCcee--EEeecc
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKV--SLYDVL 86 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~d~~ 86 (294)
.|+++| +-+|+++|..|++.|++|.+.+++.+ .++...+.+.+ .|.++ +..|+.
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~-------------------~g~~~~~~~~Dvt 67 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK-------------------VGGEAIAVKGDVT 67 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-------------------TTCEEEEEECCTT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHh-------------------cCCcEEEEEccCC
Confidence 478888 67999999999999999999999864 56666555542 13333 345666
Q ss_pred h-HHHHHHHHHHHHHH
Q psy13746 87 S-EQIENAKNTIQHTL 101 (294)
Q Consensus 87 ~-~~~~~~~~~~~~~l 101 (294)
+ +.+++..+++.+.+
T Consensus 68 ~~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 68 VESDVINLVQSAIKEF 83 (261)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 5 55666666555544
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.04 E-value=0.018 Score=45.04 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=30.0
Q ss_pred ceEEE--ccccHHHHHHHHHC-CCeEE-EEeCChHHHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASA-GYKVS-LYDVLSEQIENAK 51 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~-G~~V~-~~d~~~~~~~~~~ 51 (294)
||||| |.||+..+..+... +++|+ ++|+++++.+...
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~ 43 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFA 43 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccch
Confidence 79999 99999999888775 66766 7899998866543
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.04 E-value=0.0089 Score=49.64 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=37.2
Q ss_pred cceEEE----ccccHHHHHHHHH---CCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFAS---AGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~---~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.||+|| +-+|+++|..|++ .|++|.+.+|+++.++++.+.+.
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~ 54 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG 54 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHH
Confidence 589999 5689999999986 79999999999999998887765
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.00 E-value=0.018 Score=39.98 Aligned_cols=33 Identities=24% Similarity=0.139 Sum_probs=26.2
Q ss_pred cceEEE--ccccH-HHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQ-AWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~-~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+||-|| |-+|. ++|..|.+.|++|++.|+.+..
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~ 37 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETE 37 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCCh
Confidence 478888 44444 5688999999999999998754
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0093 Score=49.04 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=36.4
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
.||++| +-+|.++|..|++.|++|.+.||+++.+++..+.+
T Consensus 5 GKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l 49 (248)
T d2o23a1 5 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL 49 (248)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh
Confidence 388888 77999999999999999999999999988776654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.88 E-value=0.02 Score=47.80 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=33.7
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVL-SEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~-~~~~~~~~~~i~ 55 (294)
.|+++| +-+|+++|..|++.|++|.+.|++ ++.+++..+.+.
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~ 64 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK 64 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHH
Confidence 378888 789999999999999999999987 455666555544
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=95.85 E-value=0.015 Score=48.01 Aligned_cols=69 Identities=20% Similarity=0.218 Sum_probs=46.5
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.|+++| +-||+++|..|++.|++|.+.|++++... ++.++. + ...+..+..|+.+ +
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~--~~~~~~----~-------------g~~~~~~~~Dvs~~~ 65 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEA--EAAIRN----L-------------GRRVLTVKCDVSQPG 65 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHH--HHHHHH----T-------------TCCEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHH--HHHHHH----c-------------CCcEEEEEeeCCCHH
Confidence 578888 67999999999999999999999875422 222221 0 1123455667766 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+++..+.+.+.+
T Consensus 66 ~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 66 DVEAFGKQVISTF 78 (247)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655555
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.81 E-value=0.016 Score=47.98 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=34.3
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLY-DVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~-d~~~~~~~~~~~~i~ 55 (294)
.|+++| +-+|+++|..|++.|++|.+. +++++.+++..+.+.
T Consensus 6 GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~ 52 (259)
T d1ja9a_ 6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELK 52 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHH
Confidence 478888 779999999999999999985 667777777776665
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=95.81 E-value=0.018 Score=49.96 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=64.7
Q ss_pred CccceEEE--ccccHHHHHHHHH-CCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |..+..-+..+.. .+. +|.+|||++++.++..+.+..
T Consensus 127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~------------------------------- 175 (340)
T d1x7da_ 127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------------------------------- 175 (340)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT-------------------------------
T ss_pred CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhh-------------------------------
Confidence 45789999 9999877776654 554 899999999988766544320
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
..| -.+..++++++++++||+|+.|.+.+.. ..++. .+++++++.|
T Consensus 176 ------------------~~g------------~~v~~~~s~~eav~~ADIi~t~Tas~s~--~Pv~~--~~~l~pG~hI 221 (340)
T d1x7da_ 176 ------------------YSG------------LTIRRASSVAEAVKGVDIITTVTADKAY--ATIIT--PDMLEPGMHL 221 (340)
T ss_dssp ------------------CTT------------CEEEECSSHHHHHTTCSEEEECCCCSSE--EEEEC--GGGCCTTCEE
T ss_pred ------------------ccC------------CCceecCCHHHHHhcCCceeeccccCCC--Ccccc--hhhcCCCCEE
Confidence 001 1245678999999999999998854310 01111 2457888887
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 222 ~aiGs 226 (340)
T d1x7da_ 222 NAVGG 226 (340)
T ss_dssp EECSC
T ss_pred eeccc
Confidence 65544
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0035 Score=43.87 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=29.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
++|+|+ |..|.++|..|.+.|++|++||.++.
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 689999 99999999999999999999998654
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.64 E-value=0.013 Score=43.57 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEE
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVS 38 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~ 38 (294)
+||+|. |.||+.++..+...|+++.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~ 28 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELV 28 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEE
Confidence 479999 9999999998888888765
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0096 Score=46.55 Aligned_cols=30 Identities=7% Similarity=0.059 Sum_probs=27.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
++|+|| ..+|+++|..|++.|..|++++..
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~ 72 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 72 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence 689999 789999999999999999998854
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=95.63 E-value=0.019 Score=47.29 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=34.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEe-CChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYD-VLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d-~~~~~~~~~~~~i~ 55 (294)
+|++| +-+|+++|..|++.|++|.+.+ ++++.+++..+.++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~ 47 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIE 47 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 68888 6699999999999999999865 57777777776654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.005 Score=51.01 Aligned_cols=37 Identities=32% Similarity=0.291 Sum_probs=32.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
.|+++| +-+|+++|+.|++.|++|.+.||+++++++.
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~ 46 (245)
T d2ag5a1 6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQEL 46 (245)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGG
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 477888 8899999999999999999999999887654
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=95.46 E-value=0.031 Score=46.43 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=33.4
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i~ 55 (294)
++|+|| +-+|+++|..|++.|++|.+.++ +++..++..+.+.
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~ 48 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLN 48 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHH
Confidence 589999 56999999999999999998765 5556666665554
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.41 E-value=0.0053 Score=49.82 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=29.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
+||+|| |..|.+.|..|+++|++|+++|++.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999 9999999999999999999999863
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.40 E-value=0.041 Score=39.43 Aligned_cols=36 Identities=14% Similarity=0.031 Sum_probs=31.2
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
.+-++|.|| |.+|.+-|..|++.|.+|++++.....
T Consensus 10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~ 47 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIP 47 (113)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCH
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCh
Confidence 344789999 999999999999999999999986643
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.38 E-value=0.029 Score=48.17 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=62.9
Q ss_pred CccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |..++.-+..+.. .. .+|.+|+|++++.+...+...
T Consensus 124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~-------------------------------- 171 (320)
T d1omoa_ 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCE-------------------------------- 171 (320)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHH--------------------------------
T ss_pred CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHH--------------------------------
Confidence 34689999 9999988887765 33 489999999998776544322
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
..+ +....+..+++++||+|+.|++....+ +. .+++++++.|
T Consensus 172 ------------------~~~--------------~~~~~~~~~a~~~aDiV~taT~s~~P~----~~--~~~l~~G~hv 213 (320)
T d1omoa_ 172 ------------------DRG--------------ISASVQPAEEASRCDVLVTTTPSRKPV----VK--AEWVEEGTHI 213 (320)
T ss_dssp ------------------HTT--------------CCEEECCHHHHTSSSEEEECCCCSSCC----BC--GGGCCTTCEE
T ss_pred ------------------hcC--------------CccccchhhhhccccEEEEeccCcccc----cc--hhhcCCCCeE
Confidence 111 223445567899999999999875433 21 2457888887
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 214 ~~iGs 218 (320)
T d1omoa_ 214 NAIGA 218 (320)
T ss_dssp EECSC
T ss_pred eecCC
Confidence 65554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.33 E-value=0.2 Score=38.51 Aligned_cols=39 Identities=21% Similarity=0.122 Sum_probs=33.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
.+|.|+ |.+|...++.+...|. +|++.|+++++++.+++
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence 578888 8899888888888997 79999999999887754
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.28 E-value=0.004 Score=45.59 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=30.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
.++|+|| |.+|.-+|..|+..|.+|+++++.+.-
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i 57 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI 57 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence 4789999 999999999999999999999997643
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=95.16 E-value=0.032 Score=42.86 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=29.0
Q ss_pred cceEEE--ccccHH-HHHHHHHC-CCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQA-WAMIFASA-GYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~-iA~~~~~~-G~~V~~~d~~~~~~~~~~~ 52 (294)
.||+|| |.||+. ....+.+. +.++.++|++++..+...+
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~ 44 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLAT 44 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence 489999 889976 44455554 5688899999988776543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.15 E-value=0.014 Score=46.34 Aligned_cols=37 Identities=14% Similarity=-0.034 Sum_probs=29.2
Q ss_pred CccceEEE---ccccHHHHHHHHHCCCeEEE--EeCChHHHH
Q psy13746 12 GFYPDGII---GLIGQAWAMIFASAGYKVSL--YDVLSEQIE 48 (294)
Q Consensus 12 ~~~~i~ii---G~mG~~iA~~~~~~G~~V~~--~d~~~~~~~ 48 (294)
.+++|.|. |.+|+.++..|++.|++|.+ ..|+++...
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~ 43 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE 43 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH
Confidence 35788888 99999999999999987555 456776543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.14 E-value=0.082 Score=38.55 Aligned_cols=36 Identities=8% Similarity=-0.173 Sum_probs=29.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++|.|+ |.+|..++..| .|++|.++|.+++..+...
T Consensus 1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~ 38 (129)
T d2fy8a1 1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVL 38 (129)
T ss_dssp CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHH
Confidence 356677 99999999987 5788999999999877654
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.12 E-value=0.056 Score=42.04 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=26.2
Q ss_pred cceEEE--ccccHHHHHHHHHCC-Ce-EEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YK-VSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~-V~~~d~~~~~~ 47 (294)
.||+|. |.||+.+.+.+.... .+ |.+.|+++...
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~ 40 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFE 40 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHH
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHH
Confidence 489999 999999999888754 44 55778876543
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.11 E-value=0.04 Score=46.79 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=28.1
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
.|+++| +-||+++|..|++.|++|.+.|++.+
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 478888 77999999999999999999987643
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.03 E-value=0.058 Score=41.92 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=28.5
Q ss_pred CCccceEEE--ccccHHH-HHHHHHCC--CeEE-EEeCChHHHHHHH
Q psy13746 11 GGFYPDGII--GLIGQAW-AMIFASAG--YKVS-LYDVLSEQIENAK 51 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~i-A~~~~~~G--~~V~-~~d~~~~~~~~~~ 51 (294)
|+--||+|| |.+|+.+ +..+.+.+ +++. ++|+++++.+...
T Consensus 1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~ 47 (181)
T d1zh8a1 1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFA 47 (181)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHH
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhh
Confidence 333589999 9999874 66666543 3554 8999998876543
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.99 E-value=0.022 Score=44.46 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=34.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++|.|+ |-.+++++..|...| +|++++|++++.+...+.+.
T Consensus 19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~ 61 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIA 61 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHH
Confidence 578888 889999999987777 99999999999887665443
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.012 Score=45.79 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=26.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
++|+|| ..+|+++|..|.+.|..|++.+..
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~ 70 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF 70 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS
T ss_pred ceEEEEeccccccHHHHHHHHHhhccccccccc
Confidence 689999 789999999999999999988743
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=94.89 E-value=0.026 Score=46.31 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=32.8
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHH-HHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQI-ENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~-~~~~~~i~ 55 (294)
+|++| +-+|+++|..|++.|++|.+.|++.+.. ++..+.+.
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~ 47 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELN 47 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHH
Confidence 57888 6799999999999999999999986654 44444443
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=94.85 E-value=0.032 Score=46.23 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=30.2
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
.|+++| | -||.++|..|++.|++|++.+|+++..+..
T Consensus 5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~ 47 (274)
T d2pd4a1 5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRV 47 (274)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 467777 5 399999999999999999999997544443
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.84 E-value=0.017 Score=47.56 Aligned_cols=67 Identities=9% Similarity=0.050 Sum_probs=48.6
Q ss_pred ceEEE----ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-
Q psy13746 15 PDGII----GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS- 87 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~- 87 (294)
|+.+| +-+|.++|..|++.|+ .|++..|++++++++.+. ...++.+..+|+.+
T Consensus 4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~--------------------~~~~~~~~~~Dvs~~ 63 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI--------------------KDSRVHVLPLTVTCD 63 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC--------------------CCTTEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh--------------------hCCceEEEEEecCCH
Confidence 44556 7799999999999995 688889999887765431 12346677788877
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 88 EQIENAKNTIQHTL 101 (294)
Q Consensus 88 ~~~~~~~~~~~~~l 101 (294)
+.++++.+.+.+.+
T Consensus 64 ~~v~~~~~~i~~~~ 77 (250)
T d1yo6a1 64 KSLDTFVSKVGEIV 77 (250)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66777777666555
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=94.77 E-value=0.055 Score=44.42 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=30.5
Q ss_pred cceEEE-c---c--ccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII-G---L--IGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii-G---~--mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
.|+++| | . ||+++|..|++.|++|++.+++.+++.+
T Consensus 6 gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~ 47 (268)
T d2h7ma1 6 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ 47 (268)
T ss_dssp TCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHH
Confidence 467777 6 2 9999999999999999999999887643
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.014 Score=42.27 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=32.4
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
.....||+|+ |.+|+-+|....+-|++|.++|.+++.
T Consensus 8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 3344689999 999999999999999999999999875
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.75 E-value=0.017 Score=47.45 Aligned_cols=34 Identities=26% Similarity=0.132 Sum_probs=29.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
.|+++| +-||+++|..|++.|++|.+.||+++..
T Consensus 7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~ 44 (237)
T d1uzma1 7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP 44 (237)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence 477788 7799999999999999999999997653
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.74 E-value=0.073 Score=38.51 Aligned_cols=31 Identities=16% Similarity=0.152 Sum_probs=26.0
Q ss_pred ccceEEE------ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 13 FYPDGII------GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 13 ~~~i~ii------G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
+++|+|| +..|..+...|.+.||+|+.+...
T Consensus 1 ~KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~ 37 (116)
T d1y81a1 1 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPN 37 (116)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccc
Confidence 4789999 788999999999999987766544
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.73 E-value=0.069 Score=41.34 Aligned_cols=39 Identities=18% Similarity=0.009 Sum_probs=33.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
.+|.|+ |.+|...++.+...|. +|++.|+++++++.+++
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~ 70 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF 70 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence 578888 9889888888888896 79999999999887654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=94.61 E-value=0.01 Score=48.38 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=30.2
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
.+||+|| |.-|...|..|+++|++|+++|++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3799999 99999999999999999999998764
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.084 Score=39.83 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=26.9
Q ss_pred hccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCC
Q psy13746 132 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF 174 (294)
Q Consensus 132 a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~ 174 (294)
.++++|++|.|+|.+.. +++..++.+ ...++++++++|..
T Consensus 62 ~~~~~DivF~a~~~~~s--~~~~~~~~~-~g~~~~VID~Ss~f 101 (146)
T d1t4ba1 62 ALKALDIIVTCQGGDYT--NEIYPKLRE-SGWQGYWIDAASSL 101 (146)
T ss_dssp HHHTCSEEEECSCHHHH--HHHHHHHHH-TTCCCEEEECSSTT
T ss_pred hhhcCcEEEEecCchHH--HHhhHHHHh-cCCCeecccCCccc
Confidence 47899999999997653 344444443 23346777888754
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.49 E-value=0.14 Score=43.49 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=33.3
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
-++|.|. |.+|+.++..|++.|++|....|+.+......
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~ 52 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHH
Confidence 3678777 99999999999999999999999987765543
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.36 E-value=0.031 Score=45.83 Aligned_cols=67 Identities=10% Similarity=0.045 Sum_probs=46.7
Q ss_pred cceEEE---ccccHHHHHHHH---HCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII---GLIGQAWAMIFA---SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~---~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
++|.|- +-+|+++|..|+ +.|++|++.+|+++.++++++.... ...+.++.+|+++
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~------------------~~~~~~~~~Dvs~ 64 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN------------------HSNIHILEIDLRN 64 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH------------------CTTEEEEECCTTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc------------------CCcEEEEEEEecc
Confidence 456444 678999998886 4799999999999988776543221 1245667788877
Q ss_pred -HHHHHHHHHHH
Q psy13746 88 -EQIENAKNTIQ 98 (294)
Q Consensus 88 -~~~~~~~~~~~ 98 (294)
+.+++..+.++
T Consensus 65 ~~~v~~~~~~i~ 76 (248)
T d1snya_ 65 FDAYDKLVADIE 76 (248)
T ss_dssp GGGHHHHHHHHH
T ss_pred HHHHHHHHhhhH
Confidence 56666666543
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=94.36 E-value=0.037 Score=45.42 Aligned_cols=35 Identities=23% Similarity=0.010 Sum_probs=31.3
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
-+||.|+ |.+|+.++..|.++|++|++++|++...
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~ 40 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTAS 40 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTT
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccc
Confidence 3689999 9999999999999999999999986653
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=94.31 E-value=0.022 Score=46.53 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=31.0
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
.|+++| +-||+++|..|++.|++|.+.||+++.+++
T Consensus 4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~ 43 (234)
T d1o5ia_ 4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR 43 (234)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence 366677 679999999999999999999999877654
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.27 E-value=0.0087 Score=43.46 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=30.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++|+|| |.+|.-+|..|++.|.+|+++++.+.-
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i 57 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI 57 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence 689999 999999999999999999999988764
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.25 E-value=0.09 Score=40.77 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=25.9
Q ss_pred ccceEEE--ccccHHHHHHHHHCC-Ce-EEEEeCChHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG-YK-VSLYDVLSEQ 46 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G-~~-V~~~d~~~~~ 46 (294)
|.+|||- |.+|+.+.+.+...+ .+ |.+.|+++..
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~ 38 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDF 38 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHH
Confidence 4689999 999999999888765 44 4467777643
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.23 E-value=0.0073 Score=44.42 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=30.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
++++|| |.+|.-+|..|++.|.+|+++++.+.-+
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l 59 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG 59 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence 689999 9999999999999999999999987543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=94.22 E-value=0.035 Score=45.99 Aligned_cols=33 Identities=18% Similarity=-0.003 Sum_probs=29.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+||.|. |.+|+.++..|++.||+|++..|++..
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~ 39 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV 39 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc
Confidence 689888 999999999999999999999997643
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.16 E-value=0.017 Score=48.16 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 9 AQGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 9 ~~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
...+-++|+|| |.-|.+-|..|+++|++|+++|.++
T Consensus 26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 33445799999 9999999999999999999999865
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=94.07 E-value=0.077 Score=42.31 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=33.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
++|+|- |.+|..+|..|...|.+|+++|.+++.+...
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~ 66 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA 66 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence 578777 9999999999999999999999999887654
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.00 E-value=0.017 Score=47.39 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=28.5
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
+||++| +-+|+++|..|++.|++|.+.|++++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 478888 56999999999999999999999864
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=93.98 E-value=0.024 Score=43.89 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=26.9
Q ss_pred CCccceEEE--ccccHHHHHHHHHC-CCeEE-EEeCChHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASA-GYKVS-LYDVLSEQ 46 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~-G~~V~-~~d~~~~~ 46 (294)
|+-.||+|+ |.||+..+..+.+. +++++ ++|++++.
T Consensus 1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~ 40 (170)
T d1f06a1 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL 40 (170)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC
T ss_pred CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc
Confidence 444589999 99999999888774 56544 78887643
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=93.92 E-value=0.058 Score=44.46 Aligned_cols=38 Identities=16% Similarity=-0.024 Sum_probs=30.0
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
.|+++| +-+|..+|..|++.|++|++.+++.+..+...
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~ 46 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA 46 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH
Confidence 366777 66899999999999999988877766655443
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=93.91 E-value=0.018 Score=47.41 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=27.7
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
-|.|| |.+|.+.|..|++.|++|+++|+++
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 38888 9999999999999999999999864
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=93.88 E-value=0.058 Score=43.50 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=27.6
Q ss_pred ceEEE--ccccHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHH
Q psy13746 15 PDGII--GLIGQA-WAMIFASA-GYKVS-LYDVLSEQIENAKN 52 (294)
Q Consensus 15 ~i~ii--G~mG~~-iA~~~~~~-G~~V~-~~d~~~~~~~~~~~ 52 (294)
+|||| |.||+. +...+... +.+|. ++|+++++.+...+
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~ 77 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAA 77 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHH
Confidence 78999 889875 44444443 66666 99999999876554
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.87 E-value=0.17 Score=37.73 Aligned_cols=86 Identities=9% Similarity=0.018 Sum_probs=59.2
Q ss_pred cceEEE------ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII------GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii------G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
++|+|| +..|..++..+...||+|+.+....+.+.
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~--------------------------------------- 60 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVL--------------------------------------- 60 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEET---------------------------------------
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccC---------------------------------------
Confidence 579999 78899999999999998877765432110
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
| ..+..++.+.-...|+|+.++|... ..++++++.+. ....++
T Consensus 61 --------------------G--------------~~~~~sl~dlp~~iD~v~i~vp~~~--~~~~~~e~~~~-g~k~v~ 103 (139)
T d2d59a1 61 --------------------G--------------RKCYPSVLDIPDKIEVVDLFVKPKL--TMEYVEQAIKK-GAKVVW 103 (139)
T ss_dssp --------------------T--------------EECBSSGGGCSSCCSEEEECSCHHH--HHHHHHHHHHH-TCSEEE
T ss_pred --------------------C--------------CcccccccccCccceEEEEEeCHHH--HHHHHHHHHHh-CCCEEE
Confidence 1 3455677765557999999999754 45777776654 344555
Q ss_pred EecCCCCCH
Q psy13746 168 SSSTSSFLP 176 (294)
Q Consensus 168 ~s~tSt~~~ 176 (294)
. ..++...
T Consensus 104 ~-~~G~~~e 111 (139)
T d2d59a1 104 F-QYNTYNR 111 (139)
T ss_dssp E-CTTCCCH
T ss_pred E-eccccCH
Confidence 4 5555543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.013 Score=39.57 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=30.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+++|+|+ |.+|+-++.....-|++|.++|.+++.
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~ 36 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP 36 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence 4789999 999999999999999999999998755
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.83 E-value=0.03 Score=43.92 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=31.5
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+-++|+|| |.-|..-|..+++.||+|+++|.+++-
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI 78 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCcc
Confidence 34789999 999999999999999999999998754
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=93.68 E-value=0.061 Score=45.89 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=31.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~ 48 (294)
++|.|+ |.+|+.++..|++.||+|++.-|+++...
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~ 41 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI 41 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH
T ss_pred CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhh
Confidence 688888 99999999999999999999999887643
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.62 E-value=0.024 Score=44.08 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=30.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~ 46 (294)
+||+|| |..|...|..|++.|+ +|+++|+++.-
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~ 40 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYV 40 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence 699999 9999999999999999 59999998754
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.61 E-value=0.15 Score=39.64 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=25.6
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeE-EEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKV-SLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V-~~~d~~~~~ 46 (294)
-||+|. |.+|+.+++.+...+ .+| .+.|+++..
T Consensus 2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~ 38 (178)
T d1b7go1 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNY 38 (178)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSH
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcH
Confidence 489999 999999999999754 554 456776654
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.52 E-value=0.031 Score=46.05 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=32.4
Q ss_pred eEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 16 DGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 16 i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
.++| +-+|+++|..|++.|++|.+.|++.+.+++++..
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~ 43 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAF 43 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhh
Confidence 3566 6699999999999999999999999988876543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=93.30 E-value=0.031 Score=40.36 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=30.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++|+|| |..|.-+|..|++.|.+|+++++.+.-
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~ 56 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP 56 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence 689999 999999999999999999999998754
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.25 E-value=0.041 Score=40.14 Aligned_cols=35 Identities=37% Similarity=0.451 Sum_probs=31.6
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
..++|+|| |.+|.-+|..|++.|.+|+++++.+.-
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~ 65 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 65 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence 45799999 999999999999999999999998654
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=93.22 E-value=0.024 Score=46.16 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=28.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
++|+|| |.-|...|..|+++|++|+++|.++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 479999 9999999999999999999999875
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.21 E-value=0.013 Score=42.40 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=30.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
++++|| |..|.-+|..|++.|++|+++++.+.-+
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il 57 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL 57 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence 689999 9999999999999999999999987543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.85 Score=34.43 Aligned_cols=39 Identities=18% Similarity=-0.019 Sum_probs=31.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|....+.+...|.+|++.+.++++.+.+++
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~ 71 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ 71 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccccc
Confidence 467777 788888777777899999999999988776643
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=93.14 E-value=0.24 Score=37.62 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=26.3
Q ss_pred ccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCC
Q psy13746 133 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS 173 (294)
Q Consensus 133 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt 173 (294)
..+.|+||.|+|.......... ...+..++++++++|.
T Consensus 69 ~~~iDiVf~ATpag~h~~~~~~---~~aa~~G~~VID~s~a 106 (157)
T d1nvmb1 69 FADIDFVFDATSASAHVQNEAL---LRQAKPGIRLIDLTPA 106 (157)
T ss_dssp GGGEEEEEECSCHHHHHHHHHH---HHHHCTTCEEEECSTT
T ss_pred ccccCEEEEcCCchhHHHhHHH---HHHHHcCCEEEEcccc
Confidence 4679999999997665444332 2234668888899874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.10 E-value=0.22 Score=38.11 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=32.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|...++.+...|. .|++.|+++++++.+++
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~ 71 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ 71 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH
Confidence 578888 9999999988888887 56688999999887754
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.93 E-value=0.028 Score=45.69 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=28.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
+||+|| |.=|..-|..|+++|++|+++|.++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 689999 9999999999999999999999864
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=92.79 E-value=0.022 Score=41.48 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=30.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++++|| |.+|.-+|..|++.|.+|+++.+.+.-
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l 57 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF 57 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeeccc
Confidence 689999 999999999999999999999987653
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=92.67 E-value=0.029 Score=45.30 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=28.9
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
|+++| +-||+++|..|++.|++|.+.|++++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 67788 689999999999999999999998764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.63 E-value=0.045 Score=39.89 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=28.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
++++|| |.+|.-+|..|++.|.+|+++.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 689999 999999999999999999999976
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=92.50 E-value=0.073 Score=43.46 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=31.7
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
.|+++| | -+|+++|..|++.|++|++.+++++..+.+.+.
T Consensus 5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~ 50 (258)
T d1qsga_ 5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEF 50 (258)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHH
T ss_pred CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 467777 3 367999999999999999999997766655443
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=92.45 E-value=0.06 Score=39.74 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=33.3
Q ss_pred HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcC
Q psy13746 242 ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYA 281 (294)
Q Consensus 242 v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~ 281 (294)
++|+++. ..+.|++.++++.|++++++.++++.+.|.++.
T Consensus 9 l~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~ 52 (132)
T d2cvza1 9 AINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNA 52 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhh
Confidence 4555553 368999999999999999999999998888753
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=92.40 E-value=0.052 Score=39.50 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=31.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
++|+|| |.+|.-+|..|++.|.+|+++++++.-+
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l 66 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM 66 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeeccccc
Confidence 689999 9999999999999999999999998654
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.25 E-value=0.052 Score=39.42 Aligned_cols=33 Identities=36% Similarity=0.315 Sum_probs=30.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++|+|| |.+|.-+|..|+..|++|+++++++.-
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l 67 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF 67 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence 578999 999999999999999999999998753
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.056 Score=44.41 Aligned_cols=31 Identities=32% Similarity=0.258 Sum_probs=28.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
.||+|| |.=|.+-|..|+++|++|++++.++
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 579999 9999999999999999999999764
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=92.23 E-value=0.29 Score=36.72 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=28.0
Q ss_pred hccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCC
Q psy13746 132 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF 174 (294)
Q Consensus 132 a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~ 174 (294)
.++++|+||.|+|... -+++..++.+. ..+++|++++|..
T Consensus 61 ~~~~~DvvF~alp~~~--s~~~~~~l~~~-g~~~~VIDlSsdf 100 (147)
T d1mb4a1 61 SLKQLDAVITCQGGSY--TEKVYPALRQA-GWKGYWIDAASTL 100 (147)
T ss_dssp HHTTCSEEEECSCHHH--HHHHHHHHHHT-TCCSEEEESSSTT
T ss_pred hhccccEEEEecCchH--HHHHhHHHHHc-CCceEEEeCCccc
Confidence 4799999999999865 34555555442 3346777888765
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=92.23 E-value=0.12 Score=39.68 Aligned_cols=53 Identities=8% Similarity=-0.092 Sum_probs=32.6
Q ss_pred eeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHH
Q psy13746 123 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS 180 (294)
Q Consensus 123 i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia 180 (294)
+..++++++....+|+||+-...+. -.+.++. ...-+..+++.|++.+.+++.
T Consensus 59 ~~~~~~~~~~~~~~DViIDFs~p~~--~~~~~~~---a~~~~~~~ViGTTG~~~~~~~ 111 (162)
T d1diha1 59 VTVQSSLDAVKDDFDVFIDFTRPEG--TLNHLAF---CRQHGKGMVIGTTGFDEAGKQ 111 (162)
T ss_dssp CCEESCSTTTTTSCSEEEECSCHHH--HHHHHHH---HHHTTCEEEECCCCCCHHHHH
T ss_pred ceeeccHHHHhcccceEEEeccHHH--HHHHHHH---HHhccceeEEecCCCcHHHHH
Confidence 4456777777889999999654432 2233332 233355666678888766543
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.14 E-value=0.054 Score=39.53 Aligned_cols=33 Identities=27% Similarity=0.207 Sum_probs=30.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++|+|| |.+|.-+|..|++.|.+|+++++++.-
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~ 57 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV 57 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence 689999 999999999999999999999998643
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.07 E-value=0.018 Score=42.23 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=31.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
++++|| |.+|.-+|..+++.|.+|+++.+++.-+
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l 61 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV 61 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence 689999 9999999999999999999999987654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.06 E-value=0.1 Score=39.58 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=34.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|...++.+...|.+|++.|+++++++.+++
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc
Confidence 578888 999999888888899999999999999987764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.86 E-value=0.33 Score=36.73 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=31.9
Q ss_pred cceEEE---ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~ 52 (294)
.+|.|+ |.+|...++.+...| .+|+++|+++++++.+++
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~ 71 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR 71 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH
Confidence 467787 678888888888778 599999999999887654
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.66 E-value=0.074 Score=42.84 Aligned_cols=39 Identities=23% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCCCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 8 PAQGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 8 ~~~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+...+-++|.|| |.-|...|..+++.|++|+++|.+++-
T Consensus 44 ~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 44 RQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp CCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CcccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence 334456789999 999999999999999999999988754
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=91.65 E-value=0.083 Score=44.85 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=31.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
+||-|. |.+|+.++..|+++|++|.++|+++.....
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~ 47 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS 47 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHH
Confidence 688888 999999999999999999999998765443
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.59 E-value=0.058 Score=45.84 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=30.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
.+||+|| |.-|...|..|+++|++|+++|.++.-
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~i 37 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 37 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 3789999 999999999999999999999988743
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.58 E-value=0.073 Score=40.73 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=33.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|...++.+...|.+|+++|+++++++.+++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~ 69 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK 69 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc
Confidence 578888 889988887777789999999999999988765
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.56 E-value=0.068 Score=39.47 Aligned_cols=35 Identities=29% Similarity=0.293 Sum_probs=31.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~ 48 (294)
++|+|| |.+|.-+|..++..|.+|+++++.+.-+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~ 72 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE 72 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeecccccc
Confidence 689999 99999999999999999999999876543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=91.51 E-value=0.11 Score=39.69 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=32.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|...++.+...|.+|++.|.++++++.+++
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~ 72 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA 72 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc
Confidence 578888 889988887777899999999999998776543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.48 E-value=0.052 Score=44.86 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=29.6
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+|.|| |.-|..+|..|++.|++|+++|++++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD 37 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 79999 999999999999999999999998753
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.43 E-value=0.49 Score=35.83 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=31.0
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~ 52 (294)
.+|.|+ |.+|...++.+...| ..|++.|+++++++.+++
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~ 75 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER 75 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh
Confidence 467777 899988888777777 578899999998887654
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.30 E-value=0.14 Score=37.61 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=32.8
Q ss_pred HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 242 ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 242 v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
++|+++. ..+.|++.++++.|++++++.+++..+.|.+|
T Consensus 10 l~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~ 52 (134)
T d3cuma1 10 VCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNW 52 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchh
Confidence 5566553 46899999999999999999999999888764
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=91.29 E-value=0.44 Score=36.53 Aligned_cols=39 Identities=23% Similarity=0.112 Sum_probs=30.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|...++.....|.+|+..++++++.+.+++
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~ 72 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ 72 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh
Confidence 455555 667887777777899999999999998776554
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=90.93 E-value=0.27 Score=41.48 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=26.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
|||.|+ |.+|+.++..|++.|++|+++|+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 468888 99999999999999999999986
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=90.92 E-value=0.069 Score=44.43 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=27.3
Q ss_pred ceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
+|.|| |.+|.+.|..|++.|. +|+++|+++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 68899 9999999999999996 799999874
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=90.58 E-value=0.8 Score=33.57 Aligned_cols=31 Identities=10% Similarity=0.033 Sum_probs=27.9
Q ss_pred cceEEE------ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII------GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii------G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
++|+|| +..|..+...|.+.||++..+..++
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~ 50 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRF 50 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGG
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecc
Confidence 579999 7899999999999999999988765
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.44 E-value=0.088 Score=41.38 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=27.4
Q ss_pred ceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
+|+|| |.-|.+-|..|+++|+ +|+++|.++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 78999 9999999999999996 699999875
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=90.42 E-value=0.081 Score=43.40 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=27.1
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
-|.|| |..|.+.|..|+++|++|+++|+.+
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 37788 9999999999999999999999753
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.34 E-value=0.46 Score=34.74 Aligned_cols=42 Identities=12% Similarity=-0.013 Sum_probs=29.5
Q ss_pred eccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 125 GTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 125 ~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
..+++.+++.++|+||.+++-+. |.++...+.++.+|.+...
T Consensus 80 ~~~~~~e~i~~~D~ivi~t~h~~------f~~l~~~~~~~~~I~D~~~ 121 (136)
T d1mv8a3 80 LVSDLDEVVASSDVLVLGNGDEL------FVDLVNKTPSGKKLVDLVG 121 (136)
T ss_dssp BCSCHHHHHHHCSEEEECSCCGG------GHHHHHSCCTTCEEEESSS
T ss_pred eehhhhhhhhhceEEEEEeCCHH------HHHHHHHhcCCCEEEECCC
Confidence 45788889999999999987542 2334444566777776544
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=90.25 E-value=0.049 Score=39.94 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=30.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
++++|| |.+|.-+|..++..|.+|+++++.+.-+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il 62 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM 62 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc
Confidence 689999 9999999999999999999999877543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.24 E-value=0.091 Score=41.07 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=27.6
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
-|.|| |.-|...|..|+++|++|+++|+++.
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 36788 99999999999999999999999863
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=90.16 E-value=0.2 Score=36.81 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=32.9
Q ss_pred HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 242 ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 242 v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
++|+++. ..+.|++.++++.|++++++..++..+.|.++
T Consensus 10 l~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~ 52 (133)
T d1vpda1 10 LANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGST 52 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccch
Confidence 5666653 46899999999999999999999998888764
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.98 E-value=0.016 Score=46.47 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=23.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEE
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLY 40 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~ 40 (294)
+||+|| |.+|.+.|..|+++|++|+++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~ 29 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQP 29 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEE
Confidence 479999 999999999999999865433
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=89.88 E-value=0.54 Score=37.94 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|+|- |.+|+.+|..|...|.+|++.|.+++.++....
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~ 80 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVA 80 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHH
Confidence 577777 999999999999999999999999988776543
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=0.15 Score=40.80 Aligned_cols=36 Identities=19% Similarity=0.056 Sum_probs=30.0
Q ss_pred CCccceEEE---ccccHHHHHHHHHCCC--eEEEEeCChHH
Q psy13746 11 GGFYPDGII---GLIGQAWAMIFASAGY--KVSLYDVLSEQ 46 (294)
Q Consensus 11 ~~~~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~~~ 46 (294)
|.-++|.|. |.+|+.++..|.+.|. +|+++.|++..
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~ 52 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT 52 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhh
Confidence 444678888 9999999999999884 89999997643
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=89.72 E-value=0.32 Score=39.87 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=25.8
Q ss_pred ccceEEEccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 13 FYPDGIIGLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 13 ~~~i~iiG~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
-+||++||.+ +....+.+.|.+++++|++++
T Consensus 122 g~kV~vIG~~--P~v~~l~~~~~~~~VlE~~p~ 152 (251)
T d2h1qa1 122 GKKVGVVGHF--PHLESLLEPICDLSILEWSPE 152 (251)
T ss_dssp TSEEEEESCC--TTHHHHHTTTSEEEEEESSCC
T ss_pred CCEEEEEecc--hhHHHHHhcCCcEEEEeCCCC
Confidence 4789999999 566667888999999999973
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=89.67 E-value=0.21 Score=41.40 Aligned_cols=42 Identities=21% Similarity=0.074 Sum_probs=32.3
Q ss_pred CCCCCccceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 8 PAQGGFYPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 8 ~~~~~~~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
|.+++ .|+++| | -+|+++|..|++.|.+|++.++++......
T Consensus 3 ~~~L~-gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~ 50 (297)
T d1d7oa_ 3 PIDLR-GKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFE 50 (297)
T ss_dssp CCCCT-TCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHH
T ss_pred CcCCC-CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhH
Confidence 33443 366777 5 499999999999999999999987655443
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.64 E-value=1.5 Score=32.94 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=21.8
Q ss_pred cceEEEc---cccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGIIG---LIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~iiG---~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
.+|+++| .+..+++..+..-|.++++.-.
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P 36 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATP 36 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTTCEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEecc
Confidence 5888884 4666667777778999998854
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=89.39 E-value=0.29 Score=36.54 Aligned_cols=35 Identities=17% Similarity=0.077 Sum_probs=29.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
++.|+ |.+|..+|..|++.|++|+++++.+.-+..
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~ 79 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM 79 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 45554 899999999999999999999998754443
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.36 E-value=0.12 Score=43.56 Aligned_cols=32 Identities=25% Similarity=0.187 Sum_probs=28.2
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
+||++| |.+|+.++..|.++||+|+.+||.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 578655 99999999999999999999999654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=89.27 E-value=0.14 Score=36.67 Aligned_cols=34 Identities=6% Similarity=0.072 Sum_probs=31.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
++|+|| |.+|.-+|..|+..|.+|+++++.+.-+
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l 58 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK 58 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence 689999 9999999999999999999999987543
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=89.25 E-value=0.11 Score=42.00 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=28.9
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
.||.|. +-+|+++|..|++.|++|++.|++++.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~ 38 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND 38 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence 577555 889999999999999999999998754
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=88.86 E-value=0.11 Score=43.93 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=29.3
Q ss_pred CccceEEE--ccccHHHHHHHHHCC--CeEEEEeCChH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSE 45 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~ 45 (294)
.++||+|| |.-|...|..|++.| ++|++++++..
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 46799999 999999999998766 69999999864
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.50 E-value=0.32 Score=35.58 Aligned_cols=43 Identities=5% Similarity=0.036 Sum_probs=27.6
Q ss_pred eeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 123 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 123 i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
..+..++.+.=...|+++.++|.+. ..+++++..+.--...++
T Consensus 52 ~~~y~sl~dlp~~vDlvvi~vp~~~--~~~~~~~~~~~g~~~~vi 94 (129)
T d2csua1 52 VKAYKSVKDIPDEIDLAIIVVPKRF--VKDTLIQCGEKGVKGVVI 94 (129)
T ss_dssp EECBSSTTSCSSCCSEEEECSCHHH--HHHHHHHHHHHTCCEEEE
T ss_pred eEeecchhhcCCCCceEEEecChHH--hHHHHHHHHHcCCCEEEE
Confidence 3455677754457899999999755 446777766543333343
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.47 E-value=0.61 Score=34.59 Aligned_cols=38 Identities=0% Similarity=-0.104 Sum_probs=26.2
Q ss_pred hccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCC
Q psy13746 132 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF 174 (294)
Q Consensus 132 a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~ 174 (294)
...++|++|.|+|.... .++..++ ...+++|++++|..
T Consensus 61 ~~~~~d~vf~a~p~~~s--~~~~~~~---~~~g~~VID~Ss~f 98 (144)
T d2hjsa1 61 DFSSVGLAFFAAAAEVS--RAHAERA---RAAGCSVIDLSGAL 98 (144)
T ss_dssp CGGGCSEEEECSCHHHH--HHHHHHH---HHTTCEEEETTCTT
T ss_pred hhccceEEEecCCcchh--hhhcccc---ccCCceEEeechhh
Confidence 46889999999987543 2344443 34578888887755
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.38 E-value=0.15 Score=43.41 Aligned_cols=31 Identities=23% Similarity=0.117 Sum_probs=28.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|||.|. |.+|+.++..|.++||+|+++|+..
T Consensus 16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 578888 9999999999999999999999754
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=88.36 E-value=0.5 Score=36.48 Aligned_cols=41 Identities=5% Similarity=0.003 Sum_probs=27.1
Q ss_pred ChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCC
Q psy13746 128 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL 175 (294)
Q Consensus 128 ~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~ 175 (294)
+.++...++|+||.|+|..... ++. ... .++.|+++++...
T Consensus 59 ~~~~~~~~~dvvf~a~p~~~s~--~~~----~~~-~~~~VIDlSadfR 99 (176)
T d1vkna1 59 DPEKVSKNCDVLFTALPAGASY--DLV----REL-KGVKIIDLGADFR 99 (176)
T ss_dssp CHHHHHHHCSEEEECCSTTHHH--HHH----TTC-CSCEEEESSSTTT
T ss_pred CHhHhccccceEEEccccHHHH--HHH----Hhh-ccceEEecCcccc
Confidence 4444457899999999987642 222 222 4677888888654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.29 E-value=0.28 Score=37.68 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=35.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~ 53 (294)
..|.|+ |-+|...++.+...|. +|++.|+++++++.+++.
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 468888 9999999999999995 899999999999988764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.21 E-value=0.38 Score=36.06 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=33.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|...++.+...|.+|++.+.++++++.+++
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE 69 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence 577777 999998888888899999999999999987765
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.89 E-value=0.19 Score=42.54 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=26.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
+||.|. |.+|+.++..|++.|++|+++|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 689777 99999999999999999999984
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=87.85 E-value=0.11 Score=42.00 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=30.4
Q ss_pred CCCCCccceEEE-----ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 8 PAQGGFYPDGII-----GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 8 ~~~~~~~~i~ii-----G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
|++..+.+|=+| |.||..||..+...|++|+++--
T Consensus 15 ~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g 54 (223)
T d1u7za_ 15 PTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSG 54 (223)
T ss_dssp BCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhc
Confidence 455667788888 99999999999999999999864
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=87.81 E-value=0.94 Score=36.89 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 25 AWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 25 ~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.++..+++.|.+|+.+|+|++.++.+++...
T Consensus 133 ~l~i~aa~~g~~V~gvDis~~av~~A~~na~ 163 (254)
T d2nxca1 133 VLAIAAEKLGGKALGVDIDPMVLPQAEANAK 163 (254)
T ss_dssp HHHHHHHHTTCEEEEEESCGGGHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEECChHHHHHHHHHHH
Confidence 3556677889999999999999998876543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.66 E-value=1.1 Score=32.89 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.1
Q ss_pred ceEEE---ccccHHHHHHHHH-CCCeEE
Q psy13746 15 PDGII---GLIGQAWAMIFAS-AGYKVS 38 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~-~G~~V~ 38 (294)
||+|+ |.||+.++..+.+ .++++.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~ 28 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLS 28 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEE
Confidence 68899 9999999988766 556654
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.53 E-value=0.2 Score=42.05 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=27.2
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
+|+++| |.+|+.++..|++.||+|+++|+..
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 356666 9999999999999999999999854
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.45 E-value=0.14 Score=42.92 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=29.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
..|.|| |.-|.+.|..|+++|++|+++|.++.
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 578899 99999999999999999999998764
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.44 E-value=0.33 Score=41.12 Aligned_cols=39 Identities=18% Similarity=-0.096 Sum_probs=32.9
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.||++| | -+|++||..|++.|.+|.+.+++.........
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~ 46 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKN 46 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHH
Confidence 589999 6 59999999999999999999998876554443
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=86.96 E-value=0.13 Score=41.75 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=28.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|||.|. |.+|+.++..|.+.||+|+..|+++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 568788 9999999999999999999999864
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=86.95 E-value=0.75 Score=36.86 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=25.7
Q ss_pred cceEEE--ccccHHHHH----HHHH--CCCeEE-EEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAM----IFAS--AGYKVS-LYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~----~~~~--~G~~V~-~~d~~~~~~~~~~~ 52 (294)
-||||| |.+|.-++. .+.+ .++++. ++|+++++.++..+
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~ 64 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIE 64 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHH
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHH
Confidence 478999 776655544 3333 356765 89999988766543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=86.59 E-value=0.85 Score=37.56 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=25.4
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
||.|. |.+|+.++..|++.|++|+++|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 67676 99999999999999999999984
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.48 E-value=0.19 Score=39.91 Aligned_cols=32 Identities=16% Similarity=0.060 Sum_probs=28.1
Q ss_pred cceEEE--ccccHHHHHHHHHC--CCeEEEEeCChH
Q psy13746 14 YPDGII--GLIGQAWAMIFASA--GYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~--G~~V~~~d~~~~ 45 (294)
.||+|| |.-|.+-|..|+++ |++|+++|..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 489999 99999999999775 789999999875
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.33 E-value=0.23 Score=41.07 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=26.5
Q ss_pred eEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 16 DGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 16 i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+|| |.-|.+-|..|+++|++|+++|.++
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 6788 9999999999999999999999754
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.06 E-value=0.24 Score=39.80 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=28.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~ 45 (294)
.+|.|| |.-|...|..|+++|. +|++++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 378999 9999999999999995 9999999764
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.03 E-value=1 Score=33.82 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=29.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |-+|...++.+...|. .|+..|+++++++.+++
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~ 71 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE 71 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH
Confidence 467777 7677777777777885 78889999999887654
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=85.35 E-value=0.28 Score=41.86 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=25.9
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
||++| |.+|+.++..|++.|++|++.|+....
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~ 37 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASS 37 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcc
Confidence 67756 999999999999999999999996543
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.11 E-value=0.24 Score=39.85 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=27.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++|.|. |-+|+++|..|++.|++|.+.|++++.
T Consensus 3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~ 38 (236)
T d1dhra_ 3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE 38 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 345444 789999999999999999999987643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.92 E-value=1 Score=35.03 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=31.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|...++.+...|. +|++.|.++++++.+++
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~ 68 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA 68 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence 477788 8888777777666776 89999999999988765
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.75 E-value=2.5 Score=36.78 Aligned_cols=34 Identities=6% Similarity=0.052 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHH
Q psy13746 22 IGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 22 mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~ 55 (294)
.|.......+..|. +|+++|+++..++.+++...
T Consensus 227 ~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~ 261 (406)
T d1u2za_ 227 VGNCVVQAALECGCALSFGCEIMDDASDLTILQYE 261 (406)
T ss_dssp TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Confidence 45554444455676 79999999999998877644
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=84.73 E-value=2.4 Score=32.35 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.5
Q ss_pred ceEEEc-cccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGIIG-LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~iiG-~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+|.=|| -.| ..+..+++.|++|+.+|++++.++.+++..
T Consensus 33 rvLDiGcG~G-~~~~~la~~g~~v~gvD~s~~~l~~a~~~~ 72 (198)
T d2i6ga1 33 RTLDLGCGNG-RNSLYLAANGYDVTAWDKNPASMANLERIK 72 (198)
T ss_dssp EEEEETCTTS-HHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred cEEEECCCCC-HHHHHHHHHhhhhccccCcHHHHHHHHHHh
Confidence 555552 234 367788999999999999999999877654
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.69 E-value=1.8 Score=33.15 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=23.4
Q ss_pred cceEEE--c--cccHHHHHHHHHCCCeEEEEeCC
Q psy13746 14 YPDGII--G--LIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii--G--~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
-+|+++ | .+..+++..++..|.++.+.-+.
T Consensus 6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~ 39 (185)
T d1dxha2 6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPK 39 (185)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccH
Confidence 368888 3 46778888888899999988763
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.65 E-value=0.33 Score=40.49 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=27.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
+||.|. |.+|+.++..|++.|++|+++|+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~ 34 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF 34 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 578777 999999999999999999999963
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=84.40 E-value=0.49 Score=36.12 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=34.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |-+|...++.+...|. +|++.|+++++++.+++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence 578888 9999999988888886 79999999999998865
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.24 E-value=2 Score=32.32 Aligned_cols=38 Identities=18% Similarity=-0.018 Sum_probs=30.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++|.|. |.+|...++.+...|.+|...+.++++.+.++
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~ 67 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS 67 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCCCCcccccchhhccccccceeeecccccccccc
Confidence 466665 78888888888889999999999988876554
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.01 E-value=0.39 Score=39.79 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=27.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
++|-|. |.+|+.++..|++.||+|+.+|+...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 355556 99999999999999999999998753
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=83.97 E-value=0.32 Score=36.27 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=28.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~ 45 (294)
+||.|| |..|..+|..|++.|. +|+++|+++.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 699999 9999999999999875 7899998863
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=83.92 E-value=0.8 Score=36.87 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=24.4
Q ss_pred ccccHHHHHHHHHCCC-eEEEEeCChHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGY-KVSLYDVLSEQIENA 50 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~ 50 (294)
|-||+.+|..|++.|+ .|.++.|+....+.+
T Consensus 19 ~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~ 50 (259)
T d2fr1a1 19 GGVGGQIARWLARRGAPHLLLVSRSGPDADGA 50 (259)
T ss_dssp SHHHHHHHHHHHHHTCSEEEEEESSGGGSTTH
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeCCccCHHHH
Confidence 7899999999999998 588888875443333
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=83.87 E-value=1.6 Score=33.16 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=22.7
Q ss_pred ccceEEE---ccccHHHHHHHHHC-CCeEEEE
Q psy13746 13 FYPDGII---GLIGQAWAMIFASA-GYKVSLY 40 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~-G~~V~~~ 40 (294)
|.||+|+ |..|+-+.+.|... .+++.-.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l 32 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL 32 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence 4799999 99999999999986 4566533
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.86 E-value=0.35 Score=41.57 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=26.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
+||.|. |.+|+.++..|++.||+|+++|-
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn 33 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDN 33 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence 578777 99999999999999999999993
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=83.81 E-value=0.35 Score=38.51 Aligned_cols=31 Identities=29% Similarity=0.154 Sum_probs=27.9
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
-|.|| |.-|...|..+++.|++|+++|+++.
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~ 36 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK 36 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 47788 99999999999999999999998764
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.69 E-value=0.98 Score=37.23 Aligned_cols=38 Identities=16% Similarity=-0.143 Sum_probs=28.1
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEE---eCChHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLY---DVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~---d~~~~~~~~~~ 51 (294)
+||++| +-||+++|..|++.|.+|+.+ .++.+..++..
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~ 46 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW 46 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHH
Confidence 689988 789999999999999876554 44544444433
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=83.38 E-value=0.43 Score=39.33 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=27.9
Q ss_pred ccceEEE--ccccHH-----HHHHHHHCCCeEEEEeCChH
Q psy13746 13 FYPDGII--GLIGQA-----WAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 13 ~~~i~ii--G~mG~~-----iA~~~~~~G~~V~~~d~~~~ 45 (294)
|++|+|- |-.|.. +|..|++.|++|.++|.|++
T Consensus 2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ 41 (289)
T d2afhe1 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 5678877 888876 47788899999999999986
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=83.14 E-value=1.1 Score=34.89 Aligned_cols=42 Identities=21% Similarity=0.105 Sum_probs=30.2
Q ss_pred cceEEEccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGIIGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~iiG~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++|.=||-=...++..+++.|.+|+.+|++++.++.+++.+.
T Consensus 17 ~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~ 58 (231)
T d1vl5a_ 17 EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIE 58 (231)
T ss_dssp CEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccc
Confidence 456555222334556778889999999999999998876543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=83.07 E-value=3.1 Score=32.63 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=30.5
Q ss_pred cceEEEccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGIIGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~iiG~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.=||-=...++..|++.|++|+++|.+++.++.++++.
T Consensus 43 ~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~ 83 (251)
T d1wzna1 43 RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKA 83 (251)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCCccchhhcccceEEEEEeecccccccccccc
Confidence 34544433234567788899999999999999999887654
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=82.56 E-value=2.1 Score=31.20 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=22.3
Q ss_pred cceEEE-c-------cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII-G-------LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii-G-------~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
+||.|| + .|...|+..+...|++|.++|.+.
T Consensus 3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~ 41 (152)
T d1e5da1 3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKA 41 (152)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeeccc
Confidence 478888 2 345566777777888888888765
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=82.46 E-value=2.8 Score=31.77 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 25 AWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 25 ~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.++..++..+.+|+.+|++++.++.+++.+.
T Consensus 46 ~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~ 76 (186)
T d1l3ia_ 46 GVTLELAGRVRRVYAIDRNPEAISTTEMNLQ 76 (186)
T ss_dssp HHHHHHHTTSSEEEEEESCHHHHHHHHHHHH
T ss_pred cccccccccceEEEEecCCHHHHHHHHHHHH
Confidence 4455667777899999999999998887654
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=82.18 E-value=0.33 Score=40.50 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=27.5
Q ss_pred cceEEE--ccccHHHHHHHH-----HCCCeEEEEeCChH
Q psy13746 14 YPDGII--GLIGQAWAMIFA-----SAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~-----~~G~~V~~~d~~~~ 45 (294)
.-|.|| |..|..+|..|+ ++|++|+++|+.+.
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 458888 999999999996 48999999998754
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.16 E-value=0.41 Score=40.18 Aligned_cols=29 Identities=24% Similarity=0.075 Sum_probs=26.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
++|-|. |.+|+.++..|.+.|++|+++|+
T Consensus 17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 456666 99999999999999999999997
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=81.98 E-value=0.88 Score=34.67 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=34.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|...++.+...|. +|++.|+++++++.+++
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~ 71 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA 71 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence 578888 9999999988888997 78899999999988765
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=81.89 E-value=0.71 Score=34.84 Aligned_cols=41 Identities=10% Similarity=-0.097 Sum_probs=32.6
Q ss_pred cceEEE-ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII-GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii-G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.+|-.+ --.| ..|..|++.|++|+++|++++.++.++++..
T Consensus 22 ~rvLd~GCG~G-~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~ 63 (201)
T d1pjza_ 22 ARVLVPLCGKS-QDMSWLSGQGYHVVGAELSEAAVERYFTERG 63 (201)
T ss_dssp CEEEETTTCCS-HHHHHHHHHCCEEEEEEECHHHHHHHHHHHC
T ss_pred CEEEEecCcCC-HHHHHHHHcCCceEeecccHHHHHHHHHHhc
Confidence 466666 2235 4777899999999999999999999987654
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=81.70 E-value=0.51 Score=38.28 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=27.1
Q ss_pred ccceEEE--ccccHH-----HHHHHHHCCCeEEEEeCChH
Q psy13746 13 FYPDGII--GLIGQA-----WAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 13 ~~~i~ii--G~mG~~-----iA~~~~~~G~~V~~~d~~~~ 45 (294)
|++|+|. |-.|.+ +|..|++.|++|.++|.|++
T Consensus 1 mr~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q 40 (269)
T d1cp2a_ 1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CCEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4688888 777875 46678889999999999985
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.46 E-value=0.28 Score=38.64 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=28.6
Q ss_pred cceEEE--ccccHHHHHHHHHCC-------CeEEEEeCChH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-------YKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-------~~V~~~d~~~~ 45 (294)
.||+|| |.=|.+-|..|+++| ++|++||.++.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 489999 999999999999988 47999999874
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=81.32 E-value=0.28 Score=41.41 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=26.3
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
+|||.|. |.+|+.++..|.+.|++|.++.++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d 35 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD 35 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence 5899888 999999999999999976665543
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=80.84 E-value=0.39 Score=38.64 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=28.7
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
.|.|| |.-|..-|..++++|++|+++|.++.-
T Consensus 6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 57788 999999999999999999999998754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=80.80 E-value=1.7 Score=35.27 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=24.6
Q ss_pred cCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 134 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
...|.|+.-+|+.. .++.++.+.++|+.+++..
T Consensus 153 ~~fD~V~ld~p~p~----~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 153 QMYDAVIADIPDPW----NHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp CCEEEEEECCSCGG----GSHHHHHHTEEEEEEEEEE
T ss_pred ceeeeeeecCCchH----HHHHHHHHhcCCCceEEEE
Confidence 35899998888765 4567777888888877643
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.41 E-value=1.8 Score=36.39 Aligned_cols=42 Identities=19% Similarity=0.010 Sum_probs=30.4
Q ss_pred ccceEEEccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHH
Q psy13746 13 FYPDGIIGLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 13 ~~~i~iiG~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i 54 (294)
.++|.|||.=+.++++.+++ .+ -+|+++|+|++.++-+++..
T Consensus 107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~ 150 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFL 150 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHC
T ss_pred CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhc
Confidence 46888884445556666665 34 48999999999999877643
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=80.19 E-value=1.6 Score=32.76 Aligned_cols=39 Identities=13% Similarity=-0.093 Sum_probs=31.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|....+.+...|.+|+..++++++.+.+++
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~ 71 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK 71 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh
Confidence 467776 667777777777799999999999999887764
|