Psyllid ID: psy13779

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690--

DRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKWNQEYPNINIENLIAHLMRERTDYDTDYKSLMLFHSYEIKTARSVKMETKHSSRHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKFPGYEDI

ccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccc

ccEEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccHcccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccEEccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccEHHcccccEHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHccHEEEccccEEEHccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccccccccc

drlvqwchgspgFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRkgyslchgvagNAYAFLTAYHTTHAEEQMYRALCFANWvtgynkhedttpdrpyslyegkvGVAFFLLDilkptnakwnqeypniNIENLIAHLMRERtdydtdykSLMLFHSYEIKTARSVKMetkhssrhhqnkykygegeksklftvenkekivlhpsfETKVWATLTRLIEDidseyetsdkfrdhdysvyvgtsgQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRrfsflngdagpIAVSALIYKALGKQEKLESSVQKLKALAPHlvdlrsdipdeilygRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGqnlsarkksrvpleyewhdknyygaahGVTGILFTLLKsnvltdkerdtlvKPTLDAllhetfpsgnlksshgsdsdrlvqwchgspgfTSLLQVAYETYNDKKYLDALLKSsdnfvswsfgeceyewhdknyygaahGVTGILFTLLKsnvltdkerdtlVKPTLDalldetfpsgnlksshgsdsdrlvqwchgspgFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRkgyslchgvsgnAYAFLTAYHTTHAEEQMYRALCFANWvtgynkhedttpdrpyslyegkvGVAFFLLDilkptnakfpgyedi

drlvqwchgspgFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPtnakwnqeypnINIENLIAHLMRERTDYDTDYKSLMLFHSYEIKTARSVKMetkhssrhhqnkykygegekskLFTVENkekivlhpsfetkvWATLTRLIEDIDseyetsdkfrdhdYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRfsflngdagpIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSIlrsgqnlsarkksrvpLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDIlkptnakfpgyedi

**LVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKWNQEYPNINIENLIAHLMRERTDYDTDYKSLMLFHSYEIKT****************************LFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNL****KSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHE****************RLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALL******************RLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTN*********

DRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNK***TTPDRPYSLYEGKVGVAFFLLDILKPTNAKWNQEYPNINIENLIAHLMRERTDYDTDYKSLMLFHSYEIKTA***********RHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKFPGYEDI

DRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVAGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKWNQEYPNINIENLIAHLMRERTDYDTDYKSLMLFHSYEIKTAR***************KYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSG***********RLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSG***********RLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKFPGYEDI

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		692	2.2.26 [Sep-21-2011]
Q9JJK2		450	LanC-like protein 2 OS=Mu	yes	N/A	0.459	0.706	0.386	3e-61
Q9NS86		450	LanC-like protein 2 OS=Ho	yes	N/A	0.458	0.704	0.391	3e-61
Q90ZL2		405	LanC-like protein 1 OS=Da	no	N/A	0.478	0.817	0.340	1e-53
O43813		399	LanC-like protein 1 OS=Ho	no	N/A	0.446	0.774	0.352	2e-50
O89112		399	LanC-like protein 1 OS=Mu	no	N/A	0.447	0.776	0.335	4e-49
Q9QX69		399	LanC-like protein 1 OS=Ra	no	N/A	0.452	0.784	0.332	4e-48
Q9Y0Y7		419	LanC-like protein 3 homol	yes	N/A	0.267	0.441	0.400	3e-32
Q29HZ1		420	LanC-like protein 3 homol	no	N/A	0.270	0.445	0.4	1e-31
Q8CD19		420	LanC-like protein 3 OS=Mu	no	N/A	0.270	0.445	0.369	2e-26
Q6ZV70		420	LanC-like protein 3 OS=Ho	no	N/A	0.270	0.445	0.369	2e-26

>sp\|Q9JJK2\|LANC2_MOUSE LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1	Back alignment and function desciption

 Score =  237 bits (604), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 129/334 (38%), Positives = 199/334 (59%), Gaps = 16/334 (4%)

Query: 202 KIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHD 261
           KIV  P+F  ++   +  L++ ++   +T+D    HD S Y G +G A+ Y   Y+ T D
Sbjct: 68  KIV--PNFIKRIQTKIKDLLQQMEEGLKTADP---HDCSAYTGWTGIALLYLQLYRVTGD 122

Query: 262 SKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALA 321
             YL ++   ++R+L+NL  RR +FL GDAGP+AV A+IY  L  + + +  + KL  + 
Sbjct: 123 QTYLLRSLDYVKRTLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMH 182

Query: 322 PHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLS--A 379
             +V   S++PDE+LYGRAGYLY+LL++N  I    +  + I++VV +I+ SG++LS   
Sbjct: 183 RTIVCQESELPDELLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREE 242

Query: 380 RKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDT-LVKPTLDALLHETFP 438
           RK  R PL Y+WH K Y GAAHG+ GI + L++     D+E  T +VKP++D + H+ F 
Sbjct: 243 RKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHKKFR 302

Query: 439 SGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGEC 498
           SGN  SS  +++DRLV WCHG+PG   +L  AY+ + ++KYL   ++ SD  V W  G  
Sbjct: 303 SGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYLKEAMECSD--VIWQRGLL 360

Query: 499 EYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKER 532
                 +  YG  HG +G  ++ L    LT  ++
Sbjct: 361 ------RKGYGICHGTSGNGYSFLSLYRLTQDKK 388

Necessary for abscisic acid (ABA) binding on the cell membrane and activation of the ABA signaling pathway in granulocytes.
Mus musculus (taxid: 10090)

>sp\|Q9NS86\|LANC2_HUMAN LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1	Back alignment and function description

>sp\|Q90ZL2\|LANC1_DANRE LanC-like protein 1 OS=Danio rerio GN=lancl1 PE=2 SV=1	Back alignment and function description

>sp\|O43813\|LANC1_HUMAN LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1 SV=1	Back alignment and function description

>sp\|O89112\|LANC1_MOUSE LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1 SV=1	Back alignment and function description

>sp\|Q9QX69\|LANC1_RAT LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1 PE=2 SV=2	Back alignment and function description

>sp\|Q9Y0Y7\|LANC3_DROME LanC-like protein 3 homolog OS=Drosophila melanogaster GN=CG2061 PE=1 SV=1	Back alignment and function description

>sp\|Q29HZ1\|LANC3_DROPS LanC-like protein 3 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15215 PE=3 SV=1	Back alignment and function description

>sp\|Q8CD19\|LANC3_MOUSE LanC-like protein 3 OS=Mus musculus GN=Lancl3 PE=2 SV=2	Back alignment and function description

>sp\|Q6ZV70\|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens GN=LANCL3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		692
47220986		479	unnamed protein product [Tetraodon nigro	0.618	0.893	0.312	7e-69
242003170		403	conserved hypothetical protein [Pediculu	0.486	0.836	0.391	3e-64
427797079		418	Putative lanthionine synthetase c-like p	0.432	0.715	0.441	5e-64
260836847		403	hypothetical protein BRAFLDRAFT_93787 [B	0.452	0.776	0.414	7e-63
345318156		471	PREDICTED: lanC-like protein 2-like [Orn	0.462	0.679	0.395	8e-62
395516808		470	PREDICTED: lanC-like protein 2 [Sarcophi	0.453	0.668	0.399	1e-60
126336556		468	PREDICTED: lanC-like protein 2 [Monodelp	0.458	0.677	0.401	3e-60
118086105		455	PREDICTED: lanC-like protein 2 [Gallus g	0.450	0.685	0.388	4e-60
326922289		408	PREDICTED: lanC-like protein 2-like [Mel	0.453	0.769	0.387	4e-60
332251857		450	PREDICTED: lanC-like protein 2 [Nomascus	0.465	0.715	0.388	7e-60

>gi\|47220986\|emb\|CAF98215.1\| unnamed protein product [Tetraodon nigroviridis]	Back alignment and taxonomy information

 Score =  268 bits (685), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 157/502 (31%), Positives = 250/502 (49%), Gaps = 74/502 (14%)

Query: 205 LHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKY 264
           L P F  ++   +  L+  +++  +++D     D + Y G +G A+ Y   +    ++ +
Sbjct: 30  LTPEFSQRLCCKIHELLSVMENGLKSADP---RDCTGYTGWAGIALLYLHLHDVFKEAAF 86

Query: 265 LDKAQKLIERSLKNLKNRR-FSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPH 323
           L KAQ+  ERSL +L  R   +FL GDAGP+AV+A++Y  L +  + +  + +L  L   
Sbjct: 87  LQKAQEYTERSLMSLTRRHDVTFLCGDAGPLAVAAVVYHRLQRAPETDECINRLLQLHQA 146

Query: 324 LVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKS 383
           +V    ++P+E+LYGR GYLY+L+FVN+ +    I    I+Q+ +++L +G+ LS R ++
Sbjct: 147 VVKGSGNLPNELLYGRVGYLYALVFVNQQLGQDRIPLQYIQQISEAVLVTGEELSRRLRT 206

Query: 384 R--VPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKE-RDTLVKPTLDALLHETFPSG 440
           +   PL YEW+ + Y GAAHG+ GI + L++   ++ +E    LVKP++D +    FP+G
Sbjct: 207 QNHSPLMYEWYGEQYIGAAHGLAGIYYYLMQPGFVSAQEYVHRLVKPSVDHVCRLKFPTG 266

Query: 441 NLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEY 500
           N     G + D LV WCHGSPG   +L  A+ T+  ++YL   L+  +  V W +G    
Sbjct: 267 NYPPCVGDERDLLVHWCHGSPGVIFMLLQAFRTFGVQQYLYDALQCGE--VVWHYGLL-- 322

Query: 501 EWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDT-----------------LVKPTLDAL 543
               K  YG  HG  G  +T L     T   +                   LVKP++D +
Sbjct: 323 ----KKGYGLCHGAAGNAYTFLALYRQTQDPKHLYRACMPGFVSAQEYVHRLVKPSVDHV 378

Query: 544 LDETFPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSDNVWH 603
               FP+GN     G + D LV WCHGSPG I +L  A+ T+  ++YL   L+  +    
Sbjct: 379 CRLKFPTGNYPPCVGDERDLLVHWCHGSPGVIFMLLQAFRTFGVQQYLYDALQCGE---- 434

Query: 604 AGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYS 663
                                                  +A+W   Y KH   TPD P+S
Sbjct: 435 --------------------------------------VYADWCMNYGKHGCRTPDTPFS 456

Query: 664 LYEGKVGVAFFLLDILKPTNAK 685
           L+EG  G  +FL D+L+P  ++
Sbjct: 457 LFEGMAGTIYFLADLLQPVRSR 478

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi\|242003170\|ref\|XP_002422637.1\| conserved hypothetical protein [Pediculus humanus corporis] gi\|212505438\|gb\|EEB09899.1\| conserved hypothetical protein [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|427797079\|gb\|JAA63991.1\| Putative lanthionine synthetase c-like protein 1, partial [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|260836847\|ref\|XP_002613417.1\| hypothetical protein BRAFLDRAFT_93787 [Branchiostoma floridae] gi\|229298802\|gb\|EEN69426.1\| hypothetical protein BRAFLDRAFT_93787 [Branchiostoma floridae]	Back alignment and taxonomy information

>gi\|345318156\|ref\|XP_001507419.2\| PREDICTED: lanC-like protein 2-like [Ornithorhynchus anatinus]	Back alignment and taxonomy information

>gi\|395516808\|ref\|XP_003762577.1\| PREDICTED: lanC-like protein 2 [Sarcophilus harrisii]	Back alignment and taxonomy information

>gi\|126336556\|ref\|XP_001379314.1\| PREDICTED: lanC-like protein 2 [Monodelphis domestica]	Back alignment and taxonomy information

>gi\|118086105\|ref\|XP_418874.2\| PREDICTED: lanC-like protein 2 [Gallus gallus]	Back alignment and taxonomy information

>gi\|326922289\|ref\|XP_003207383.1\| PREDICTED: lanC-like protein 2-like [Meleagris gallopavo]	Back alignment and taxonomy information

>gi\|332251857\|ref\|XP_003275065.1\| PREDICTED: lanC-like protein 2 [Nomascus leucogenys]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		692
UNIPROTKB\|E1C3R4		455	LANCL2 "Uncharacterized protei	0.450	0.685	0.388	1.7e-59
ZFIN\|ZDB-GENE-070209-191		435	zgc:158293 "zgc:158293" [Danio	0.460	0.733	0.385	1.9e-58
MGI\|MGI:1919085		450	Lancl2 "LanC (bacterial lantib	0.458	0.704	0.392	3.2e-58
UNIPROTKB\|Q9NS86		450	LANCL2 "LanC-like protein 2" [	0.456	0.702	0.397	4e-58
UNIPROTKB\|I3LIW1		412	LANCL2 "Uncharacterized protei	0.456	0.766	0.391	1.7e-57
RGD\|1310809		450	Lancl2 "LanC lantibiotic synth	0.458	0.704	0.386	5.9e-57
UNIPROTKB\|A6QPG6		433	LANCL2 "Uncharacterized protei	0.452	0.722	0.387	3.3e-56
UNIPROTKB\|F1PEY8		366	LANCL2 "Uncharacterized protei	0.414	0.784	0.418	1.4e-55
ZFIN\|ZDB-GENE-040924-1		423	lancl1 "LanC antibiotic synthe	0.508	0.832	0.332	1.7e-50
UNIPROTKB\|F1N9V4		334	LANCL1 "Uncharacterized protei	0.437	0.907	0.352	2.3e-50

UNIPROTKB\|E1C3R4 LANCL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 127/327 (38%), Positives = 196/327 (59%)

Query:   209 FETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKA 268
             F  ++   +  L++ ++   +T+D    HD S Y G +G A+ Y   Y+ T +  +L ++
Sbjct:    71 FTKRIQTKIKDLLQQMEEGLKTADP---HDCSAYTGWTGIALLYLQLYRVTKNQSHLQRS 127

Query:   269 QKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLR 328
                ++R L+NL  RR +FL GDAGP+AV A++Y  L  + + +  V +L  L   ++ + 
Sbjct:   128 LDYVKRILRNLSGRRVTFLCGDAGPLAVGAVVYHVLKNESESKECVARLLQLQRTVISMD 187

Query:   329 SDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSA--RKKSRVP 386
             +++PDE+LYGRAGYLY+LL++N  I S  +  S+I++V+D+I+ SG+N S   RK  R P
Sbjct:   188 AELPDELLYGRAGYLYALLYLNTEIASDTVPQSIIKEVIDAIIESGKNFSKEERKTERCP 247

Query:   387 LEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDT-LVKPTLDALLHETFPSGNLKSS 445
             L Y+WH K Y GAAHGV GI + L++     D+E  T LVKP++D + H+ F SGN  SS
Sbjct:   248 LLYQWHRKQYVGAAHGVAGIYYMLMQPIANVDQETLTELVKPSIDYVRHKKFRSGNYPSS 307

Query:   446 HGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDK 505
               +++DRLV WCHG+PG   +L  AY+T+ + KYL   ++ SD  V W  G        +
Sbjct:   308 LSNETDRLVHWCHGAPGVIHMLMQAYKTFKEDKYLKDAMECSD--VIWQRGLL------R 359

Query:   506 NYYGAAHGVTGILFTLLKS-NVLTDKE 531
               YG  HG  G  ++ L   N+  DK+
Sbjct:   360 KGYGICHGTAGNGYSFLSLYNLTQDKK 386

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IEA

GO:0010314 "phosphatidylinositol-5-phosphate binding" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0070273 "phosphatidylinositol-4-phosphate binding" evidence=IEA

ZFIN\|ZDB-GENE-070209-191 zgc:158293 "zgc:158293" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1919085 Lancl2 "LanC (bacterial lantibiotic synthetase component C)-like 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NS86 LANCL2 "LanC-like protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LIW1 LANCL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1310809 Lancl2 "LanC lantibiotic synthetase component C-like 2 (bacterial)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QPG6 LANCL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PEY8 LANCL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040924-1 lancl1 "LanC antibiotic synthetase component C-like 1 (bacterial)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N9V4 LANCL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		692
cd04794		343	cd04794, euk_LANCL, eukaryotic Lanthionine synthet	1e-74
cd04794		343	cd04794, euk_LANCL, eukaryotic Lanthionine synthet	9e-66
pfam05147		352	pfam05147, LANC_like, Lanthionine synthetase C-lik	1e-53
pfam05147		352	pfam05147, LANC_like, Lanthionine synthetase C-lik	1e-46
cd04434		343	cd04434, LanC_like, LanC-like proteins	7e-45
cd04794		343	cd04794, euk_LANCL, eukaryotic Lanthionine synthet	2e-42
cd04434		343	cd04434, LanC_like, LanC-like proteins	3e-42
pfam05147		352	pfam05147, LANC_like, Lanthionine synthetase C-lik	7e-28
cd04434		343	cd04434, LanC_like, LanC-like proteins	3e-25
cd04792		825	cd04792, LanM-like, LanM-like proteins	1e-17
cd04792		825	cd04792, LanM-like, LanM-like proteins	3e-15
TIGR03897		931	TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn	5e-14
TIGR03897		931	TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn	5e-12
COG4403		963	COG4403, LcnDR2, Lantibiotic modifying enzyme [Def	5e-09
TIGR03897		931	TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn	8e-09
cd04793		382	cd04793, LanC, LanC is the cyclase enzyme of the l	6e-07
pfam05147		352	pfam05147, LANC_like, Lanthionine synthetase C-lik	5e-06
cd04434		343	cd04434, LanC_like, LanC-like proteins	1e-05
COG4403		963	COG4403, LcnDR2, Lantibiotic modifying enzyme [Def	1e-05
TIGR03897		931	TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn	3e-05
cd04792		825	cd04792, LanM-like, LanM-like proteins	4e-04
cd04793		382	cd04793, LanC, LanC is the cyclase enzyme of the l	4e-04

>gnl\|CDD\|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like protein	Back alignment and domain information

 Score =  244 bits (624), Expect = 1e-74
 Identities = 116/282 (41%), Positives = 165/282 (58%), Gaps = 15/282 (5%)

Query: 242 YVGTSGQAMFYYIYYQR----THDSKYLDKAQKLIERSLKNLKN-RRFSFLNGDAGPIAV 296
           Y G +G A  +   Y+     T+D  YL  A + I+ SL+ + + RR SFL G+AG  AV
Sbjct: 1   YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISFLCGNAGVYAV 60

Query: 297 SALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSV 356
            A +Y  L  +++++  + K   L   +V   S +PDE+LYGRAGYLY+LLF+NK     
Sbjct: 61  GAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLPDELLYGRAGYLYALLFLNKKFGFK 120

Query: 357 NIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVL 416
            I +SLI+ + D+IL SG+  +A+ ++  PL YEWH K Y GAAHG+ GIL+ LL++ + 
Sbjct: 121 KIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTPLF 180

Query: 417 TDKERDT-LVKPTLDALLHETFPSGNLKSSHGSDS-DRLVQWCHGSPGFTSLLQVAYETY 474
             K     L+K +LD LL   FPSGN  SS G+   DRLVQWCHG+PG   LL  AY  +
Sbjct: 181 LLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVF 240

Query: 475 NDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTG 516
            +++YL+A +K  +  + W  G        K   G  HG+ G
Sbjct: 241 KEEQYLEAAIKCGE--LIWKRGLL------KKGPGLCHGIAG 274

This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs. Length = 343

>gnl\|CDD\|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like protein	Back alignment and domain information

>gnl\|CDD\|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein	Back alignment and domain information

>gnl\|CDD\|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein	Back alignment and domain information

>gnl\|CDD\|239881 cd04434, LanC_like, LanC-like proteins	Back alignment and domain information

>gnl\|CDD\|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like protein	Back alignment and domain information

>gnl\|CDD\|239881 cd04434, LanC_like, LanC-like proteins	Back alignment and domain information

>gnl\|CDD\|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein	Back alignment and domain information

>gnl\|CDD\|239881 cd04434, LanC_like, LanC-like proteins	Back alignment and domain information

>gnl\|CDD\|240109 cd04792, LanM-like, LanM-like proteins	Back alignment and domain information

>gnl\|CDD\|240109 cd04792, LanM-like, LanM-like proteins	Back alignment and domain information

>gnl\|CDD\|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM	Back alignment and domain information

>gnl\|CDD\|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM	Back alignment and domain information

>gnl\|CDD\|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms]	Back alignment and domain information

>gnl\|CDD\|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM	Back alignment and domain information

>gnl\|CDD\|240110 cd04793, LanC, LanC is the cyclase enzyme of the lanthionine synthetase	Back alignment and domain information

>gnl\|CDD\|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein	Back alignment and domain information

>gnl\|CDD\|239881 cd04434, LanC_like, LanC-like proteins	Back alignment and domain information

>gnl\|CDD\|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms]	Back alignment and domain information

>gnl\|CDD\|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM	Back alignment and domain information

>gnl\|CDD\|240109 cd04792, LanM-like, LanM-like proteins	Back alignment and domain information

>gnl\|CDD\|240110 cd04793, LanC, LanC is the cyclase enzyme of the lanthionine synthetase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		692
KOG2787\|consensus		403		100.0
KOG2787\|consensus		403		100.0
cd04794		343	euk_LANCL eukaryotic Lanthionine synthetase C-like	100.0
PF05147		355	LANC_like: Lanthionine synthetase C-like protein;	100.0
cd04434		343	LanC_like LanC-like proteins. LanC is the cyclase	100.0
cd04793		382	LanC LanC is the cyclase enzyme of the lanthionine	100.0
cd04792		825	LanM-like LanM-like proteins. LanM is a bifunction	100.0
COG4403		963	LcnDR2 Lantibiotic modifying enzyme [Defense mecha	100.0
cd04791		321	LanC_SerThrkinase Lanthionine synthetase C-like do	100.0
cd04794		343	euk_LANCL eukaryotic Lanthionine synthetase C-like	99.95
cd04434		343	LanC_like LanC-like proteins. LanC is the cyclase	99.94
cd04792		825	LanM-like LanM-like proteins. LanM is a bifunction	99.92
cd04793		382	LanC LanC is the cyclase enzyme of the lanthionine	99.91
cd04791		321	LanC_SerThrkinase Lanthionine synthetase C-like do	99.89
PF05147		355	LANC_like: Lanthionine synthetase C-like protein;	99.88
COG4403		963	LcnDR2 Lantibiotic modifying enzyme [Defense mecha	99.83
COG1331		667	Highly conserved protein containing a thioredoxin	97.49
COG1331		667	Highly conserved protein containing a thioredoxin	97.3
cd00249		384	AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d	97.05
cd00249		384	AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d	96.83
PF07470		336	Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte	96.29
COG4225		357	Predicted unsaturated glucuronyl hydrolase involve	96.06
COG4225		357	Predicted unsaturated glucuronyl hydrolase involve	95.99
PF09492		289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	94.36
PF07944		520	DUF1680: Putative glycosyl hydrolase of unknown fu	94.33
PF07944		520	DUF1680: Putative glycosyl hydrolase of unknown fu	94.32
PF00759		444	Glyco_hydro_9: Glycosyl hydrolase family 9; InterP	93.93
TIGR02474		290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	93.68
PF07470		336	Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte	93.41
PF03663		370	Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int	92.81
COG3533		589	Uncharacterized protein conserved in bacteria [Fun	88.73
PF03663		370	Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int	88.65
PF07221		346	GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN	88.01
TIGR02474		290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	86.06
COG3533		589	Uncharacterized protein conserved in bacteria [Fun	85.55
PLN00119		489	endoglucanase	83.32
PLN02345		469	endoglucanase	83.2
PLN02266		510	endoglucanase	82.45
PLN02308		492	endoglucanase	81.78
PF07221		346	GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN	80.6
PLN02420		525	endoglucanase	80.18

>KOG2787\|consensus	Back alignment and domain information

Probab=100.00  E-value=4.6e-77  Score=590.28  Aligned_cols=400  Identities=39%  Similarity=0.711  Sum_probs=350.3

Q ss_pred             ccCCCCCCCCCCCCCCcccccccc-cccccccCchHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccccccHHHHHHHH
Q psy13779        175 HSSRHHQNKYKYGEGEKSKLFTVE-NKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYY  253 (692)
Q Consensus       175 ~~~r~~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sLY~G~aGIal~l~  253 (692)
                      |+.|+|+|||||........+..+ ++...++-.++...+..+|++.+++...+   .+.-.+.|.++|+|++|||++++
T Consensus         1 me~r~~~np~pd~a~G~~e~~~~~~~e~~~~~~~e~~~r~~~~ikd~~~~~~~~---~S~d~~~d~tlYtG~~GiAfl~~   77 (403)
T KOG2787|consen    1 MERRAFVNPFPDDASGENETVGSEPDEPTGKLFTEFIKRLATKIKDLVVEMTWG---KSGDEVRDGTLYTGWLGIAFLYL   77 (403)
T ss_pred             CcccccCCCCcccccCCCccccCCCcccccccHHHHHHHHHHHHHHHHHHHHhc---ccCCCCcCCceeechHHHHHHHH
Confidence            788999999999654322221100 11011333456666666666666554444   22334889999999999999999


Q ss_pred             HHHhccCChHHHHHHHHHHHHHH-HhhccCCcccccCChHHHHHHHHHHHHhCChHHHHHHHHHHHhhhhhhhcCCCCCC
Q psy13779        254 IYYQRTHDSKYLDKAQKLIERSL-KNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIP  332 (692)
Q Consensus       254 ~L~~~t~~~~yl~~A~~~i~~~l-~~~~~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  332 (692)
                      +++++|.|..++..+.++|++|. +..+.++++|+||.||++++.+++++.+++++.++.++.+++++..    .+++.|
T Consensus        78 kly~vTrd~~~L~~~~e~Vk~~~~~~~s~~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~----~~~dlp  153 (403)
T KOG2787|consen   78 KLYEVTRDLYDLLLCLEIVKACLVASRSSRRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRL----CSSDLP  153 (403)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhccccCceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhccc----CCcccc
Confidence            99999999999999999999998 5566789999999999999999999999999999999999987663    257889


Q ss_pred             cccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhcCCCCcchhcccccccCCccchhHHHHHHHh
Q psy13779        333 DEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLK  412 (692)
Q Consensus       333 ~dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~~~lG~ahG~aGIl~~Ll~  412 (692)
                      ++++||++||+|+++++++.++.+++.++.|..|++.|+.+++.+++++.+++||||+||++.|+|++||++||+++|++
T Consensus       154 ~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~  233 (403)
T KOG2787|consen  154 DELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMD  233 (403)
T ss_pred             HHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999998888899999999999999999999999999988


Q ss_pred             hcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhhcCcHHHHHHHHhccCCCcc
Q psy13779        413 SNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVS  492 (692)
Q Consensus       413 l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~~~~~~l~~~~~~~~~~~~  492 (692)
                      ..-                                                                             
T Consensus       234 ~~L-----------------------------------------------------------------------------  236 (403)
T KOG2787|consen  234 PTL-----------------------------------------------------------------------------  236 (403)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            411                                                                             


Q ss_pred             cccCcccccccCCCccCcccchhHHHHHHHHcccCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCCch
Q psy13779        493 WSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHGSP  572 (692)
Q Consensus       493 w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~wCHG~~  572 (692)
                                                       ++..+...++++.+++|+++.++++||+|++.+++.|.+++||||+|
T Consensus       237 ---------------------------------~~d~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~drLVhWcHGAp  283 (403)
T KOG2787|consen  237 ---------------------------------KVDQPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKRDRLVHWCHGAP  283 (403)
T ss_pred             ---------------------------------CCcchhHHHhhhhHHHHHHHccCCCCCCCcccCCCcceeeeeccCCc
Confidence                                             11112346789999999999999999999999888899999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHcCCCCCCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc-
Q psy13779        573 GFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYN-  651 (692)
Q Consensus       573 Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~~~~~~gLChG~aGi~~~ll~l~~~t~d~~~l~~a~~~~~~l~~~~-  651 (692)
                      |++++|.+++++|++++|++.+.++++.+|++|++++++|+|||+|||+|+||.+|+.|+|.+|++||++|++|++++. 
T Consensus       284 Gv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae~lld~~~  363 (403)
T KOG2787|consen  284 GVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLLDYGF  363 (403)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchhhhHhHHHHcCcHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999876 


Q ss_pred             CCCCCCCCCCCccccchHHHHHHHHHhhCCCCCCCCCccC
Q psy13779        652 KHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKFPGYED  691 (692)
Q Consensus       652 ~~~~~~p~~~~sL~~G~AGi~~~Ll~l~~p~~~~fp~~~~  691 (692)
                      ...++.||+|+|||+|+||.+|+|++++.|++++||+||+
T Consensus       364 ~~g~r~pDrpySLfeG~AG~v~~l~Dll~P~~arFP~~El  403 (403)
T KOG2787|consen  364 SHGCRTPDRPYSLFEGVAGTVYLLLDLLDPEQARFPGYEL  403 (403)
T ss_pred             hccCCCCCCChhHHhcccchhhHhhhhcChhhccCCcCcC
Confidence            6678899999999999999999999999999999999985

>KOG2787\|consensus	Back alignment and domain information

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein	Back alignment and domain information

>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others

Back alignment and domain information

>cd04434 LanC_like LanC-like proteins	Back alignment and domain information

>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase	Back alignment and domain information

>cd04792 LanM-like LanM-like proteins	Back alignment and domain information

>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]	Back alignment and domain information

>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases	Back alignment and domain information

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein	Back alignment and domain information

>cd04434 LanC_like LanC-like proteins	Back alignment and domain information

>cd04792 LanM-like LanM-like proteins	Back alignment and domain information

>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase	Back alignment and domain information

>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases	Back alignment and domain information

Back alignment and domain information

>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]	Back alignment and domain information

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid	Back alignment and domain information

>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid	Back alignment and domain information

>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases []	Back alignment and domain information

>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]	Back alignment and domain information

>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]	Back alignment and domain information

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4	Back alignment and domain information

>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function	Back alignment and domain information

>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function	Back alignment and domain information

>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3	Back alignment and domain information

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family	Back alignment and domain information

>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases []	Back alignment and domain information

>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3	Back alignment and domain information

>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3	Back alignment and domain information

>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5	Back alignment and domain information

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family	Back alignment and domain information

>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PLN00119 endoglucanase	Back alignment and domain information

>PLN02345 endoglucanase	Back alignment and domain information

>PLN02266 endoglucanase	Back alignment and domain information

>PLN02308 endoglucanase	Back alignment and domain information

>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5	Back alignment and domain information

>PLN02420 endoglucanase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		692
3e6u_A		411	Crystal Structure Of Human Lancl1 Length = 411		2e-51
3e6u_A		411	Crystal Structure Of Human Lancl1 Length = 411		5e-49

>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1 Length = 411

Back alignment and structure

Iteration: 1

Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 183/329 (55%), Gaps = 20/329 (6%) Query: 205 LHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKY 264 L P F ++ + L++ ++ +++D D + Y G +G A+ Y Y D Y Sbjct: 40 LTPEFSQRLTNKIRELLQQMERGLKSADP---RDGTGYTGWAGIAVLYLHLYDVFGDPAY 96 Query: 265 LDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPHL 324 L A +++SL L R +FL GDAGP+AV+A++Y + +++ E + +L HL Sbjct: 97 LQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLI----HL 152 Query: 325 VDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKK-- 382 + P+E+LYGR GY+Y+LLFVNK+ I S I+Q+ ++IL SG+NL ARK+ Sbjct: 153 NKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENL-ARKRNF 211 Query: 383 -SRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNV-LTDKERDTLVKPTLDALLHETFPSG 440 ++ PL YEW+ + Y GAAHG+ GI + L++ ++ ++ + +LVKP++D + FPSG Sbjct: 212 TAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSG 271 Query: 441 NLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEY 500 N G + D LV WCHG+PG +L AY+ + ++KYL + +D V W +G Sbjct: 272 NYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCAD--VIWQYGLL-- 327 Query: 501 EWHDKNYYGAAHGVTGILFTLLKSNVLTD 529 K YG HG G + L LT Sbjct: 328 ----KKGYGLCHGSAGNAYAFLTLYNLTQ 352

PyMOL of 3e6u

>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1 Length = 411

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		692
3e6u_A		411	LANC-like protein 1; alpha barrel, cytoplasm, sign	4e-61
3e6u_A		411	LANC-like protein 1; alpha barrel, cytoplasm, sign	2e-56
3e6u_A		411	LANC-like protein 1; alpha barrel, cytoplasm, sign	8e-34
2g0d_A		409	Nisin biosynthesis protein NISC; alpha toroid, alp	1e-38
2g0d_A		409	Nisin biosynthesis protein NISC; alpha toroid, alp	9e-35
2g0d_A		409	Nisin biosynthesis protein NISC; alpha toroid, alp	3e-27
2g0d_A		409	Nisin biosynthesis protein NISC; alpha toroid, alp	5e-09
2g0d_A		409	Nisin biosynthesis protein NISC; alpha toroid, alp	3e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1nc5_A		373	Hypothetical protein YTER; structural genomics, he	7e-04

>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411	Back alignment and structure

 Score =  209 bits (533), Expect = 4e-61
 Identities = 116/360 (32%), Positives = 189/360 (52%), Gaps = 21/360 (5%)

Query: 176 SSRHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFR 235
           + R   N Y       ++ +         L P F  ++   +  L++ ++   +++D   
Sbjct: 14  AQRAFPNPYADYNKSLAEGYFDAAGR---LTPEFSQRLTNKIRELLQQMERGLKSADP-- 68

Query: 236 DHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIA 295
             D + Y G +G A+ Y   Y    D  YL  A   +++SL  L  R  +FL GDAGP+A
Sbjct: 69  -RDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLA 127

Query: 296 VSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPDEILYGRAGYLYSLLFVNKHIKS 355
           V+A++Y  +  +++ E  + +L     HL  +    P+E+LYGR GY+Y+LLFVNK+   
Sbjct: 128 VAAVLYHKMNNEKQAEDCITRLI----HLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGV 183

Query: 356 VNIEASLIRQVVDSILRSGQNLSARKK--SRVPLEYEWHDKNYYGAAHGVTGILFTLLKS 413
             I  S I+Q+ ++IL SG+NL+ ++   ++ PL YEW+ + Y GAAHG+ GI + L++ 
Sbjct: 184 EKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQP 243

Query: 414 N-VLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYE 472
           +  ++  +  +LVKP++D +    FPSGN     G + D LV WCHG+PG   +L  AY+
Sbjct: 244 SLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYK 303

Query: 473 TYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKER 532
            + ++KYL    + +D  V W +G        K  YG  HG  G  +  L    LT   +
Sbjct: 304 VFREEKYLCDAYQCAD--VIWQYG------LLKKGYGLCHGSAGNAYAFLTLYNLTQDMK 355

PyMOL of 3e6u

>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411	Back alignment and structure

>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411	Back alignment and structure

>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409	Back alignment and structure

>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409	Back alignment and structure

>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409	Back alignment and structure

>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409	Back alignment and structure

>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Length = 373	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		692
3e6u_A		411	LANC-like protein 1; alpha barrel, cytoplasm, sign	100.0
2g0d_A		409	Nisin biosynthesis protein NISC; alpha toroid, alp	100.0
3e6u_A		411	LANC-like protein 1; alpha barrel, cytoplasm, sign	99.96
2g0d_A		409	Nisin biosynthesis protein NISC; alpha toroid, alp	99.87
3pmm_A		382	Putative cytoplasmic protein; structural genomics,	98.25
1nc5_A		373	Hypothetical protein YTER; structural genomics, he	97.85
2gz6_A		388	N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C	97.84
3pmm_A		382	Putative cytoplasmic protein; structural genomics,	97.81
2zzr_A		397	Unsaturated glucuronyl hydrolase; alpha barrel; 1.	97.71
2gz6_A		388	N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C	97.65
3k7x_A		349	LIN0763 protein; Q92DQ0, LKR23, NESG, structural g	97.53
2ahf_A		377	Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba	97.49
2ahf_A		377	Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba	97.43
2zzr_A		397	Unsaturated glucuronyl hydrolase; alpha barrel; 1.	97.42
3k11_A		445	Putative glycosyl hydrolase; structural genomics,	97.13
1fp3_A		402	N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr	97.11
3k7x_A		349	LIN0763 protein; Q92DQ0, LKR23, NESG, structural g	97.01
3k11_A		445	Putative glycosyl hydrolase; structural genomics,	96.97
1fp3_A		402	N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr	96.85
3gt5_A		402	N-acetylglucosamine 2-epimerase; structural genomi	96.56
1nc5_A		373	Hypothetical protein YTER; structural genomics, he	96.47
2zbl_A		421	Putative isomerase; N-acyl-D-glucosamine 2-epimera	96.02
3h7l_A		586	Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru	95.63
3gt5_A		402	N-acetylglucosamine 2-epimerase; structural genomi	94.9
2zbl_A		421	Putative isomerase; N-acyl-D-glucosamine 2-epimera	94.78
1clc_A		639	Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycos	94.26
1ks8_A		433	Endo-B-1,4-glucanase; cellulase, endoglucanase, te	93.62
3gzk_A		537	Cellulase; fold from GH9 from CAZY database, glyco	87.85
1tf4_A		605	T. fusca endo/EXO-cellulase E4 catalytic domain an	87.25
1g87_A		614	Endocellulase 9G; endoglucanase, cellulose binding	85.76
2xfg_A		466	Endoglucanase 1; hydrolase-sugar binding protein c	85.27
1gxm_A		332	Pectate lyase; mechanism, elimination; 1.32A {Cell	85.14
1r76_A		408	Pectate lyase; A-helical structure; 2.65A {Azospir	84.57
1ia6_A		441	Cellulase CEL9M; cellullase, alpha barrel, hydrola	84.11

>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*	Back alignment and structure

Probab=100.00  E-value=2e-63  Score=546.46  Aligned_cols=398  Identities=38%  Similarity=0.742  Sum_probs=347.0

Q ss_pred             cccCCCCCCCCCCCCCCcccccccccccccccCchHHHHHHHHHHHHHHHHHhhccccCCCCCCCCccccccHHHHHHHH
Q psy13779        174 KHSSRHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYY  253 (692)
Q Consensus       174 ~~~~r~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sLY~G~aGIal~l~  253 (692)
                      -|++|||+|||+||+++.....+  +.+| +++++|++++++++++++++|++++++.+   +.+.++|+|.+||++||+
T Consensus        12 ~~~~r~~~n~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~~~~~lY~G~~Gia~~l~   85 (411)
T 3e6u_A           12 FMAQRAFPNPYADYNKSLAEGYF--DAAG-RLTPEFSQRLTNKIRELLQQMERGLKSAD---PRDGTGYTGWAGIAVLYL   85 (411)
T ss_dssp             CGGGGBCCCCSCCCCHHHHHTTB--CTTC-CBCHHHHHHHHHHHHHHHHHHHHHTTTSC---TTCCCSSSSHHHHHHHHH
T ss_pred             cccCccCCCCCCccccccccccc--cccc-cccHHHHHHHHHHHHHHHHHHHhhcccCC---CCCCCeeeChHHHHHHHH
Confidence            57899999999999976554433  5555 79999999999999999999999887754   899999999999999999


Q ss_pred             HHHhccCChHHHHHHHHHHHHHHHhhccCCcccccCChHHHHHHHHHHHHhCChHHHHHHHHHHHhhhhhhhcCCCCCCc
Q psy13779        254 IYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYKALGKQEKLESSVQKLKALAPHLVDLRSDIPD  333 (692)
Q Consensus       254 ~L~~~t~~~~yl~~A~~~i~~~l~~~~~~~~s~~~G~aGi~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  333 (692)
                      +++++++|++|++.|.++++.+.+.++.+.++|++|.+|++++++++|+.+++++..+++++++.+...    .+.+.++
T Consensus        86 ~l~~~t~d~~yl~~a~~~l~~~~~~l~~~~~~~~~G~aG~l~~l~~ly~~~g~~~~a~~~~~~l~~~~~----~~~~~~~  161 (411)
T 3e6u_A           86 HLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNK----IDPHAPN  161 (411)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHTTCCSCCCCTTTSTHHHHHHHHHHHHHTTCHHHHHHHHHHHHGGGG----GCTTCCS
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhcccCCccccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc----ccccCCh
Confidence            999999999999999999999988887778999999999999999999999998877777777665541    2345679


Q ss_pred             ccccCchHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhhhhhhhhhc--CCCCcchhcccccccCCccchhHHHHHHH
Q psy13779        334 EILYGRAGYLYSLLFVNKHIKSVNIEASLIRQVVDSILRSGQNLSARKK--SRVPLEYEWHDKNYYGAAHGVTGILFTLL  411 (692)
Q Consensus       334 dll~G~AG~l~~L~~l~~~~~d~~~~~~~i~~v~~~Il~~~~~~~~~~~--~~~pL~~~w~~~~~lG~ahG~aGIl~~Ll  411 (692)
                      |+++|+||++++|+.+++.++++.+.+..+.++++.|++.++...+...  ...|+||+|++..++|++||.+||+++|+
T Consensus       162 dll~G~AG~l~aLl~L~~~~~~~~~~~~~i~~i~~~ii~~g~~~~~~~~~~~~~pl~~~w~~~~~~G~aHG~aGI~~~Ll  241 (411)
T 3e6u_A          162 EMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLM  241 (411)
T ss_dssp             STTTSHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHHHHHTTTTTTCSCCCCBTTBCBCSTTTSHHHHHHHHT
T ss_pred             hhhcCcHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHhccccCCCCcceeecCccCCcccccHHHHHHHHH
Confidence            9999999999999999999999988877788999999998876544332  35789999987777777777777777776


Q ss_pred             hhcccCchhHhhhHHHHHHHHhhccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHhhcCcHHHHHHHHhccCCCc
Q psy13779        412 KSNVLTDKERDTLVKPTLDALLHETFPSGNLKSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFV  491 (692)
Q Consensus       412 ~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~~~~~~l~~~~~~~~~~~  491 (692)
                      .+++.+                                                                          
T Consensus       242 ~~~~~~--------------------------------------------------------------------------  247 (411)
T 3e6u_A          242 QPSLQV--------------------------------------------------------------------------  247 (411)
T ss_dssp             CGGGCC--------------------------------------------------------------------------
T ss_pred             HHHhhc--------------------------------------------------------------------------
Confidence            653322                                                                          


Q ss_pred             ccccCcccccccCCCccCcccchhHHHHHHHHcccCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccccccCCc
Q psy13779        492 SWSFGECEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLDETFPSGNLKSSHGSDSDRLVQWCHGS  571 (692)
Q Consensus       492 ~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~w~~~~~~~~~~~~~wCHG~  571 (692)
                                                          .++++.+.|+++++++.+.+.++||||+.++++.+.+++||||+
T Consensus       248 ------------------------------------~~~~~~~~i~~~l~~l~~~~~~~g~wp~~~~~~~~~~~~wChG~  291 (411)
T 3e6u_A          248 ------------------------------------SQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGA  291 (411)
T ss_dssp             ------------------------------------CHHHHHHTHHHHHHHHHHTCCTTSCCCSBTTCCCCCCCSSSSSH
T ss_pred             ------------------------------------ChHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccCccccccCCc
Confidence                                                12356778999999999988888999987766666789999999


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHcCCCCCCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q psy13779        572 PGFISLLQVAYETYNDKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYN  651 (692)
Q Consensus       572 ~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~i~~~g~~~~~~gLChG~aGi~~~ll~l~~~t~d~~~l~~a~~~~~~l~~~~  651 (692)
                      +||+.+++.++++++|+++++.+.++++.+|++|++.+++|||||.+|++++|+++++.|++++|+++|.++++++.++.
T Consensus       292 ~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~lChG~aG~~~~ll~~~~~t~~~~~~~~A~~~~~~~~~~~  371 (411)
T 3e6u_A          292 PGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYG  371 (411)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCSBTTCSCSTTSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCccCCCCceecChHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999997668999999999999999999999999999999999999998776


Q ss_pred             CCCCCCCCCCCccccchHHHHHHHHHhhCCCCCCCCCccC
Q psy13779        652 KHEDTTPDRPYSLYEGKVGVAFFLLDILKPTNAKFPGYED  691 (692)
Q Consensus       652 ~~~~~~p~~~~sL~~G~AGi~~~Ll~l~~p~~~~fp~~~~  691 (692)
                      .+.+++|+.++|||+|+|||+++|+|+.+|++++||+||+
T Consensus       372 ~~~~~~~~~~~sL~~G~aGi~~~Ll~l~~p~~~~fp~~~~  411 (411)
T 3e6u_A          372 EHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFEL  411 (411)
T ss_dssp             SSCCCCCSSTTSTTTSHHHHHHHHHHHTSGGGCCCTTTCC
T ss_pred             cccCCCCCCCChhhccHHHHHHHHHHHcCCCcccCCCCCC
Confidence            6677889999999999999999999999999999999985

PyMOL of 3e6u

>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A	Back alignment and structure

>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*	Back alignment and structure

>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A	Back alignment and structure

>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A	Back alignment and structure

>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*	Back alignment and structure

>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}	Back alignment and structure

>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A	Back alignment and structure

>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*	Back alignment and structure

>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}	Back alignment and structure

>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}	Back alignment and structure

>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A	Back alignment and structure

>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A	Back alignment and structure

>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*	Back alignment and structure

>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3	Back alignment and structure

>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}	Back alignment and structure

>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3	Back alignment and structure

>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}	Back alignment and structure

>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*	Back alignment and structure

>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*	Back alignment and structure

>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}	Back alignment and structure

>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}	Back alignment and structure

>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*	Back alignment and structure

>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2	Back alignment and structure

>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A	Back alignment and structure

>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*	Back alignment and structure

>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*	Back alignment and structure

>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A*	Back alignment and structure

>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}	Back alignment and structure

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*	Back alignment and structure

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1	Back alignment and structure

>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		692
d2g0da1		409	a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis	2e-37
d2g0da1		409	a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis	7e-37
d2g0da1		409	a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis	1e-26
d2g0da1		409	a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis	9e-11
d2g0da1		409	a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis	4e-06
d2g0da1		409	a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis	4e-04
d2g0da1		409	a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis	0.004
d1nc5a_		363	a.102.1.6 (A:) Hypothetical protein YteR {Bacillus	0.002

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

 Score =  142 bits (358), Expect = 2e-37
 Identities = 53/326 (16%), Positives = 95/326 (29%), Gaps = 38/326 (11%)

Query: 392 HDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVK--PTLDALLHETFPSGNLKSSHGSD 449
           +         G  GI  ++L      +K ++ L      ++  + E     NL++    D
Sbjct: 74  YGLLTGSLYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPD 133

Query: 450 SDRLVQWCHGSPGF-TSLLQVAYETYNDK-----KYLDALLKSSDNFVSW--------SF 495
            D       G  G  + LL +  E Y+D       +L  L K ++  +S         S 
Sbjct: 134 YD----VIEGLSGILSYLLLINDEQYDDLKILIINFLSNLTKENNGLISLYIKSENQMSQ 189

Query: 496 GECEYEWHDKNYYGAAHGVTGILFTLLKS--NVLTDKERDTLVKPTLDALL--------- 544
            E E         G AHG+ G+   L  +     +++   + ++  +             
Sbjct: 190 SESEMYPLGCLNMGLAHGLAGVGCILAYAHIKGYSNEASLSALQKIIFIYEKFELERKKQ 249

Query: 545 -----DETFPSGNLKSSHGSDSDRLVQWCHGSPGFISLLQVAYETYNDKKYLDALLKSSD 599
                         +      S     WC+G PG   L        ++  ++D   K  +
Sbjct: 250 FLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILE 309

Query: 600 NVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPD 659
           +     L    Y +CHG SG            + ++       F        +      +
Sbjct: 310 SAMQRKLGIDSYMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEE--YGDE 367

Query: 660 RPYSLYEGKVGVAFFLLDILKPTNAK 685
                 EG  G    L       N  
Sbjct: 368 SGTGFLEGISGCILVLSKFEYSINFT 393

PyMOL of d2g0da1

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409	Back information, alignment and structure

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409	Back information, alignment and structure

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409	Back information, alignment and structure

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409	Back information, alignment and structure

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409	Back information, alignment and structure

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409	Back information, alignment and structure

>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Length = 363	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		692
d2g0da1		409	Nisin biosynthesis protein NisC {Lactococcus lacti	100.0
d2g0da1		409	Nisin biosynthesis protein NisC {Lactococcus lacti	99.89
d2d5ja1		377	Unsaturated glucuronyl hydrolase {Bacillus sp. GL1	97.48
d1nc5a_		363	Hypothetical protein YteR {Bacillus subtilis [TaxI	96.77
d1nc5a_		363	Hypothetical protein YteR {Bacillus subtilis [TaxI	96.69
d2d5ja1		377	Unsaturated glucuronyl hydrolase {Bacillus sp. GL1	96.05
d1clca1		441	CelD cellulase, C-terminal domain {Clostridium the	95.61
d1ia6a_		431	Nonprocessive cellulase Cel9M {Clostridium cellulo	95.38
d1fp3a_		402	N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa)	94.96
d1fp3a_		402	N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa)	94.55
d1ut9a1		511	Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu	94.23
d1ks8a_		433	Endo-b-1,4-glucanase {Termite (Nasutitermes takasa	92.74
d2afaa1		411	Putative NAG isomerase YihS {Salmonella typhimuriu	92.73
d1g87a1		454	Endo/exocellulase:cellobiose E-4, N-terminal domai	91.47
d1r76a_		408	Polygalacturonic acid lyase (pectate lyase) {Azosp	90.41
d1tf4a1		460	Endo/exocellulase:cellobiose E-4, N-terminal domai	85.42

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=8.3e-39  Score=349.41  Aligned_cols=368  Identities=16%  Similarity=0.124  Sum_probs=250.6

Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCCCccccccHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhc---cCCccccc
Q psy13779        212 KVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLK---NRRFSFLN  288 (692)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sLY~G~aGIal~l~~L~~~t~~~~yl~~A~~~i~~~l~~~~---~~~~s~~~  288 (692)
                      .+++.+.+...++..+..+.   ...+.|||+|.+||++||.+|++.|++++|.+.|.++++.+.+.++   ..+.|+++
T Consensus         7 ~~~~i~~~~~~~~~~~~~~~---~~~~~sLy~G~~GiaL~l~~l~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~glf~   83 (409)
T d2g0da1           7 NVEKIIAQWDERTRKNKENF---DFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGSLYS   83 (409)
T ss_dssp             HHHHHHHHHHHHHHC--------CGGGGSTTTSHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTT
T ss_pred             HHHHHHHhhhhhhhcccccC---CCCCCcccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCCCcceeC
Confidence            34444444444443333332   2456799999999999999999999999999999999999887765   34789999


Q ss_pred             CChHHHHHHHHHHHHhCChH-HHHHHHHHHHhhhhhhhcC-----CCCCCcccccCchHHHHHHHHHHHHhccccchHHH
Q psy13779        289 GDAGPIAVSALIYKALGKQE-KLESSVQKLKALAPHLVDL-----RSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASL  362 (692)
Q Consensus       289 G~aGi~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~-----~~~~~~dll~G~AG~l~~L~~l~~~~~d~~~~~~~  362 (692)
                      |.+|+++++..+++..++.+ .++...+.+.+.++..++.     .+..++|+++|.+|++++|+.+++...+     +.
T Consensus        84 G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~D~l~G~aG~~~~LL~~~~~~~~-----~~  158 (409)
T d2g0da1          84 GAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDEQYD-----DL  158 (409)
T ss_dssp             SHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCHHHHSSSSSHHHHHHHHTTCCCGGGH-----HH
T ss_pred             CHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHhhccccCCcccchhcccHHHHHHHHHhcccccc-----HH
Confidence            99999998877765322111 1122222233333322211     1223468999999999999987665433     23


Q ss_pred             HHHHHHHHHHhhhhhhhhhcCCCCcchhcccccccCCccchhHHHHHHHhhcccCchhHhhhHHHHHHHHhhccCCCCCC
Q psy13779        363 IRQVVDSILRSGQNLSARKKSRVPLEYEWHDKNYYGAAHGVTGILFTLLKSNVLTDKERDTLVKPTLDALLHETFPSGNL  442 (692)
Q Consensus       363 i~~v~~~Il~~~~~~~~~~~~~~pL~~~w~~~~~lG~ahG~aGIl~~Ll~l~~~~~~~~~~~i~~~i~~l~~~~~~~~n~  442 (692)
                      ...+.+.+.+.....   ++    +. .|.    +  .+                .+.                 .    
T Consensus       159 ~~~i~~~l~~~~~~~---~~----~~-~~~----~--~~----------------~~~-----------------~----  187 (409)
T d2g0da1         159 KILIINFLSNLTKEN---NG----LI-SLY----I--KS----------------ENQ-----------------M----  187 (409)
T ss_dssp             HHHHHHHHHHTTSCC---SS----SC-TTC----B--CG----------------GGS-----------------S----
T ss_pred             HHHHHHHHHHHHHhc---cc----cc-ccc----c--cc----------------ccc-----------------c----
Confidence            344444444332110   00    00 000    0  00                000                 0    


Q ss_pred             CCCCCCCCCcccccccCchhHHHHHHHHHhhcCcHHHHHHHHhccCCCcccccCcccccccCCCccCcccchhHHHHHHH
Q psy13779        443 KSSHGSDSDRLVQWCHGSPGFTSLLQVAYETYNDKKYLDALLKSSDNFVSWSFGECEYEWHDKNYYGAAHGVTGILFTLL  522 (692)
Q Consensus       443 ~~~~~~~~~~~~d~~~G~aGii~~Ll~ly~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~G~~HG~sGI~~~Ll  522 (692)
                                                                       .|.  .......+..++|++||.|||+++|+
T Consensus       188 -------------------------------------------------~~~--~~~~~~~~~~~~G~aHG~sGi~~~L~  216 (409)
T d2g0da1         188 -------------------------------------------------SQS--ESEMYPLGCLNMGLAHGLAGVGCILA  216 (409)
T ss_dssp             -------------------------------------------------SHH--HHHHCTTCBEECCTTTSHHHHHHHHH
T ss_pred             -------------------------------------------------ccc--hhcccCCCCCccchhhhHHHHHHHHH
Confidence                                                             000  00001134567899999999999998


Q ss_pred             Hccc--CChHHHHHHHHHHHHHHHHhcCC---CCCCCCCCC-----------CCCCccccccCCchHHHHHHHHHHHhcC
Q psy13779        523 KSNV--LTDKERDTLVKPTLDALLDETFP---SGNLKSSHG-----------SDSDRLVQWCHGSPGFISLLQVAYETYN  586 (692)
Q Consensus       523 ~~~~--~~~~~~~~~i~~~l~~l~~~~~~---~g~w~~~~~-----------~~~~~~~~wCHG~~Gi~~~l~~~~~~~~  586 (692)
                      +++.  ...+...+.++++++++.+....   ..+||+.+.           ...+..++||||+|||+++++.+.++++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~WChG~~Gi~la~~~~~~~~~  296 (409)
T d2g0da1         217 YAHIKGYSNEASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREASFIRDAWCYGGPGISLLYLYGGLALD  296 (409)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCSCCCCCSSSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHHHhhhccccCCCCCcCcccccccccccccCcccccccCCCchHHHHHHHHHHHHcC
Confidence            8864  34456778899999988887654   356886432           1123468999999999999999999999


Q ss_pred             CHHHHHHHHHHhHHHHHcCCCCCCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccc
Q psy13779        587 DKKYLDALLKSSDNVWHAGLLRKGYSLCHGVSGNAYAFLTAYHTTHAEEQMYRALCFANWVTGYNKHEDTTPDRPYSLYE  666 (692)
Q Consensus       587 d~~~~~~a~~~~~~i~~~g~~~~~~gLChG~aGi~~~ll~l~~~t~d~~~l~~a~~~~~~l~~~~~~~~~~p~~~~sL~~  666 (692)
                      |+++.+.+.++++.+++++....++|||||.+|++++|+.+++.++++++.+++.++..........  ..+..++|||+
T Consensus       297 d~~~~~~~~~~~~~~~~~~~~~~~~~LCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gl~~  374 (409)
T d2g0da1         297 NDYFVDKAEKILESAMQRKLGIDSYMICHGYSGLIEICSLFKRLLNTKKFDSYMEEFNVNSEQILEE--YGDESGTGFLE  374 (409)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTCCSCCTTTSHHHHHHHHHHHHHHHCCCTTHHHHHHHHHTHHHHHHS--CCSTTCSSTTT
T ss_pred             CHHHHHHHHHHHHHHHHhccCCCCCcccCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--CCCCCCCchhc
Confidence            9999999999999999998866789999999999999999999999999988888775544332211  22357889999


Q ss_pred             chHHHHHHHHHhhCCCCC-C----CCCccC
Q psy13779        667 GKVGVAFFLLDILKPTNA-K----FPGYED  691 (692)
Q Consensus       667 G~AGi~~~Ll~l~~p~~~-~----fp~~~~  691 (692)
                      |.|||+++|+++.+|.+. .    |..+++
T Consensus       375 G~aGi~~~Ll~~~~~~~~~~W~~~~L~~~~  404 (409)
T d2g0da1         375 GISGCILVLSKFEYSINFTYWRQALLLFDD  404 (409)
T ss_dssp             SHHHHHHHHHHHHSCCCSSCGGGGGTCCTT
T ss_pred             cHHHHHHHHHHhcCCCCCCCcchhhccccc
Confidence            999999999999999874 2    666665

PyMOL of d2g0da1

>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}	Back information, alignment and structure

>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}	Back information, alignment and structure

>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]}	Back information, alignment and structure

>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]}	Back information, alignment and structure

>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]}	Back information, alignment and structure

>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]}	Back information, alignment and structure

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}	Back information, alignment and structure

>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]}	Back information, alignment and structure