Psyllid ID: psy13780

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGNK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHcHHHHHHHHHHHHHHHHHHccEEEEcccccEEEEcc
Coil and Loop (DISEMBL)
MSADVDKAVESAKAAFKRGSvwrnldasgRGKLIYKLAELIDKNVDYLASLetldngkpyedsifdlgcasdtfRYFAgwcdkiegstipseskdnignk
Flexible Loop (DISEMBL)
MSADVDKAVESAkaafkrgsvwrnldasgrGKLIYKLAELIDKNVDYLASLEtldngkpyeDSIFDLGCASDTFRYFAGWCDKIegstipseskdnignk
Low Complexity Region (SEG)
MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGNK
Disordered region (IsUnstruct)
***************FKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIE***************
Disordered Region (DISOPRED)
MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEGSTIPSES*******
Disordered Region (DISEMBL)
***********AKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEGSTIP**********
Disordered Region (DISPRO)
MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGNK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGNK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q8K4D8	512	Aldehyde dehydrogenase fa	yes	N/A	0.92	0.179	0.578	3e-25
Q9JHW9	512	Aldehyde dehydrogenase fa	yes	N/A	0.92	0.179	0.568	5e-25
P47738	519	Aldehyde dehydrogenase, m	no	N/A	0.87	0.167	0.590	4e-24
P11884	519	Aldehyde dehydrogenase, m	no	N/A	0.87	0.167	0.590	8e-24
P47895	512	Aldehyde dehydrogenase fa	yes	N/A	0.92	0.179	0.547	8e-24
P30842	495	Omega-crystallin OS=Ommas	N/A	N/A	0.88	0.177	0.534	9e-24
Q9CZS1	519	Aldehyde dehydrogenase X,	no	N/A	0.92	0.177	0.537	1e-23
P30837	517	Aldehyde dehydrogenase X,	no	N/A	0.92	0.177	0.537	3e-23
Q5R6B5	517	Aldehyde dehydrogenase X,	no	N/A	0.92	0.177	0.537	3e-23
Q2XQV4	521	Aldehyde dehydrogenase, m	no	N/A	0.87	0.166	0.579	5e-23

>sp|Q8K4D8|AL1A3_RAT Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/95 (57%), Positives = 74/95 (77%), Gaps = 3/95 (3%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAVE+A+AAF+RGS WR LDA  RG+L+++LA+LI+++   LA+LET+D GKP+  +
Sbjct: 70  DVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLIERDRAILATLETMDTGKPFLHA 129

Query: 64  IF-DLGCASDTFRYFAGWCDKIEGSTIPSESKDNI 97
            F DL     TFRYFAGW DKI+G TIP++  DN+
Sbjct: 130 FFVDLEGCIKTFRYFAGWADKIQGRTIPTD--DNV 162

Recognizes as substrates free retinal and cellular retinol-binding protein-bound retinal. Seems to be the key enzyme in the formation of an RA gradient along the dorso-ventral axis during the early eye development and also in the development of the olfactory system.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 5

>sp|Q9JHW9|AL1A3_MOUSE Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/95 (56%), Positives = 74/95 (77%), Gaps = 3/95 (3%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAVE+A+AAF+RGS WR LDA  RG+L+++LA+L++++   LA+LET+D GKP+  +
Sbjct: 70  DVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLVERDRAILATLETMDTGKPFLHA 129

Query: 64  IF-DLGCASDTFRYFAGWCDKIEGSTIPSESKDNI 97
            F DL     TFRYFAGW DKI+G TIP++  DN+
Sbjct: 130 FFVDLEGCIKTFRYFAGWADKIQGRTIPTD--DNV 162

Recognizes as substrates free retinal and cellular retinol-binding protein-bound retinal. Seems to be the key enzyme in the formation of an RA gradient along the dorso-ventral axis during the early eye development and also in the development of the olfactory system.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|P47738|ALDH2_MOUSE Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/88 (59%), Positives = 67/88 (76%), Gaps = 1/88 (1%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+AAF+ GS WR +DAS RG+L+Y+LA+LI+++  YLA+LETLDNGKPY  S
Sbjct: 77  DVDKAVKAARAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVIS 136

Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL       RY+AGW DK  G TIP
Sbjct: 137 YLVDLDMVLKCLRYYAGWADKYHGKTIP 164

Is capable of converting retinaldehyde to retinoic acid.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P11884|ALDH2_RAT Aldehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh2 PE=1 SV=1

 Score =  108 bits (271), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/88 (59%), Positives = 67/88 (76%), Gaps = 1/88 (1%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+AAF+ GS WR +DAS RG+L+Y+LA+LI+++  YLA+LETLDNGKPY  S
Sbjct: 77  DVDKAVKAAQAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVIS 136

Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL       RY+AGW DK  G TIP
Sbjct: 137 YLVDLDMVLKCLRYYAGWADKYHGKTIP 164

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P47895|AL1A3_HUMAN Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2

 Score =  108 bits (271), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/95 (54%), Positives = 72/95 (75%), Gaps = 3/95 (3%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAVE+A+ AF+RGS WR LDA  RG+L+++LA+L++++   LA+LET+D GKP+  +
Sbjct: 70  DVDKAVEAAQVAFQRGSPWRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHA 129

Query: 64  IF-DLGCASDTFRYFAGWCDKIEGSTIPSESKDNI 97
            F DL     T RYFAGW DKI+G TIP++  DN+
Sbjct: 130 FFIDLEGCIRTLRYFAGWADKIQGKTIPTD--DNV 162

Recognizes as substrates free retinal and cellular retinol-binding protein-bound retinal. Seems to be the key enzyme in the formation of an RA gradient along the dorso-ventral axis during the early eye development and also in the development of the olfactory system.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|P30842|CROM_OMMSL Omega-crystallin OS=Ommastrephes sloanei PE=2 SV=3

 Score =  108 bits (270), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 67/88 (76%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           +D+DKAV++ KAAFKRG+ WR +DAS  G L+Y+LA+L+++++ Y+ASLET+D GKPY++
Sbjct: 53  SDIDKAVQACKAAFKRGTPWRRMDASRLGHLLYRLADLMERDIAYMASLETMDTGKPYKN 112

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIP 90
           S  D+       RYFAGW DK  G +IP
Sbjct: 113 SYQDMVHCIQVLRYFAGWADKNMGESIP 140

Omega-crystallins are structural components of squids and octopi eye lens. Contain relatively little if any DHAL activity.

Ommastrephes sloanei (taxid: 215440)

>sp|Q9CZS1|AL1B1_MOUSE Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/93 (53%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD AV++A+ AF+ GS WR +DAS RG+L+ +LA+L++++  YLASLETLDNGKP+++
Sbjct: 76  ADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQE 135

Query: 63  S-IFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
           S + DL      +RYFAGW DK  G TIP + +
Sbjct: 136 SYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGE 168

ALDHs play a major role in the detoxification of alcohol-derived acetaldehyde. They are involved in the metabolism of corticosteroids, biogenic amines, neurotransmitters, and lipid peroxidation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P30837|AL1B1_HUMAN Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=3

 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/93 (53%), Positives = 69/93 (74%), Gaps = 1/93 (1%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD+AV++A+ AF+ GS WR +DAS RG+L+  LA+L++++  YLASLETLDNGKP+++
Sbjct: 74  ADVDRAVKAAREAFRLGSPWRRMDASERGRLLNLLADLVERDRVYLASLETLDNGKPFQE 133

Query: 63  S-IFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
           S   DL      +RYFAGW DK  G TIP + +
Sbjct: 134 SYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQ 166

ALDHs play a major role in the detoxification of alcohol-derived acetaldehyde. They are involved in the metabolism of corticosteroids, biogenic amines, neurotransmitters, and lipid peroxidation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q5R6B5|AL1B1_PONAB Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/93 (53%), Positives = 69/93 (74%), Gaps = 1/93 (1%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD+AV++A+ AF+ GS WR +DAS RG+L+  LA+L++++  YLASLETLDNGKP+++
Sbjct: 74  ADVDRAVKAAREAFRLGSPWRRMDASERGRLLNCLADLVERDRVYLASLETLDNGKPFQE 133

Query: 63  S-IFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
           S   DL      +RYFAGW DK  G TIP + +
Sbjct: 134 SYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQ 166

ALDHs play a major role in the detoxification of alcohol-derived acetaldehyde. They are involved in the metabolism of corticosteroids, biogenic amines, neurotransmitters, and lipid peroxidation.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q2XQV4|ALDH2_PIG Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 66/88 (75%), Gaps = 1/88 (1%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVD+AVE+A+AAF+ GS WR LDAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  S
Sbjct: 79  DVDRAVEAARAAFQLGSPWRRLDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVIS 138

Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL       RY+AGW DK  G T+P
Sbjct: 139 YLVDLDMVLKCLRYYAGWADKYHGKTLP 166

Is capable of converting retinaldehyde to retinoic acid.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
157103517	489	aldehyde dehydrogenase [Aedes aegypti] g	0.9	0.184	0.622	2e-28
170034682	489	aldehyde dehydrogenase [Culex quinquefas	0.89	0.182	0.617	1e-27
241836176	497	aldehyde dehydrogenase, putative [Ixodes	0.9	0.181	0.577	1e-27
318086980	205	aldehyde dehydrogenase [Latrodectus hesp	0.9	0.439	0.655	3e-27
91091542	489	PREDICTED: similar to aldehyde dehydroge	0.89	0.182	0.606	7e-27
321466398	489	hypothetical protein DAPPUDRAFT_305826 [	0.9	0.184	0.611	4e-26
346464641	490	hypothetical protein [Amblyomma maculatu	0.87	0.177	0.609	6e-26
156551115	494	PREDICTED: retinal dehydrogenase 1-like	0.93	0.188	0.612	7e-26
156396842	494	predicted protein [Nematostella vectensi	0.89	0.180	0.606	1e-25
156338531	449	hypothetical protein NEMVEDRAFT_v1g14966	0.88	0.195	0.613	2e-25

>gi|157103517|ref|XP_001648014.1| aldehyde dehydrogenase [Aedes aegypti] gi|108869413|gb|EAT33638.1| AAEL014080-PA [Aedes aegypti]

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 76/90 (84%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD AV++AK AF R S WR +DAS RGKL++KLA+L++++++ LA+LE+LDNGK + D
Sbjct: 48  ADVDIAVQAAKTAFARSSAWRQMDASARGKLLHKLADLMERDINVLANLESLDNGKAFGD 107

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
           S+FD+ CA DTFRY+AGW DKI GST+PS+
Sbjct: 108 SVFDMNCAIDTFRYYAGWADKIHGSTVPSD 137

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034682|ref|XP_001845202.1| aldehyde dehydrogenase [Culex quinquefasciatus] gi|167876073|gb|EDS39456.1| aldehyde dehydrogenase [Culex quinquefasciatus]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 75/89 (84%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DV+ AV++AK AF R S WR +DASGRGKL+ KLA+L++++++ LA+LE+LDNGK + DS
Sbjct: 49  DVEAAVQAAKTAFARSSPWRQMDASGRGKLLNKLADLMERDINVLANLESLDNGKSFGDS 108

Query: 64  IFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
           +FD+ CA DTFRY+AGW DKI GST+PS+
Sbjct: 109 VFDMNCAIDTFRYYAGWADKIHGSTVPSD 137

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241836176|ref|XP_002415083.1| aldehyde dehydrogenase, putative [Ixodes scapularis] gi|215509295|gb|EEC18748.1| aldehyde dehydrogenase, putative [Ixodes scapularis]

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/90 (57%), Positives = 75/90 (83%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD+AV++A+ AFKRGS WR +DAS RG+L+ + A+LI+++ +YLASLE L+NGKPYE+
Sbjct: 49  ADVDRAVKAAQGAFKRGSAWRTMDASKRGRLLNRFADLIERDKEYLASLEVLNNGKPYEE 108

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
           ++FD+ C+ D  RY+AGW DK+ G TIP++
Sbjct: 109 ALFDMDCSIDCIRYYAGWSDKVHGKTIPTD 138

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|318086980|gb|ADV40082.1| aldehyde dehydrogenase [Latrodectus hesperus]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 77/90 (85%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADV+KAV++AKAAFK GSVWR LDAS RG+L+YK A+LI+++++YLASL+TL+NGKP++D
Sbjct: 69  ADVEKAVQAAKAAFKNGSVWRTLDASERGRLLYKFADLIERDIEYLASLQTLENGKPFKD 128

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
           SI D+  A  TFRY+AG  DKI G TIPS+
Sbjct: 129 SIGDIMFAIKTFRYYAGCADKIHGKTIPSD 158

Source: Latrodectus hesperus

Species: Latrodectus hesperus

Genus: Latrodectus

Family: Theridiidae

Order: Araneae

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091542|ref|XP_970835.1| PREDICTED: similar to aldehyde dehydrogenase [Tribolium castaneum] gi|270000922|gb|EEZ97369.1| hypothetical protein TcasGA2_TC011192 [Tribolium castaneum]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 72/89 (80%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           D+DKAV++AKAAF RG+ WR +DAS RGKLI KLA+LI+++++ LA LETLDNGKP  DS
Sbjct: 49  DIDKAVQAAKAAFSRGAPWRKMDASTRGKLIIKLADLIERDINTLAKLETLDNGKPLSDS 108

Query: 64  IFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
             D+ C+ D  RY+ G+CDKI G+TIP++
Sbjct: 109 TLDIQCSIDVLRYYGGYCDKIHGNTIPAD 137

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321466398|gb|EFX77394.1| hypothetical protein DAPPUDRAFT_305826 [Daphnia pulex]

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/90 (61%), Positives = 71/90 (78%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD AVE+A+ AFK GS WR +DAS RG+LI KLA LI+++ DYLA+LETL+NGKP  +
Sbjct: 47  ADVDIAVEAARRAFKFGSTWRTMDASNRGRLINKLAGLIERDADYLAALETLNNGKPLAE 106

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
           + FD+ CA +  RY+AGW DKI G TIP++
Sbjct: 107 AQFDMVCAVNCLRYYAGWSDKIHGQTIPAD 136

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346464641|gb|AEO32165.1| hypothetical protein [Amblyomma maculatum]

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 53/87 (60%), Positives = 69/87 (79%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+ AFK GS WR +DAS RG L+ K A+LI ++ +YLASLE L+NGKPYE++
Sbjct: 50  DVDKAVKAAREAFKLGSTWRTMDASKRGLLLNKFADLIQRDKEYLASLEVLNNGKPYEEA 109

Query: 64  IFDLGCASDTFRYFAGWCDKIEGSTIP 90
           +FD+ C+ D  RY+AGW DKI G TIP
Sbjct: 110 LFDMDCSIDCIRYYAGWSDKIHGKTIP 136

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551115|ref|XP_001603449.1| PREDICTED: retinal dehydrogenase 1-like [Nasonia vitripennis]

 Score =  120 bits (302), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/93 (61%), Positives = 75/93 (80%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVDKAV+ A+AAF+RGSVWRNLDAS RG+LIY LA+LI+ +V+ +ASLE+LDNGKP+ +
Sbjct: 53  ADVDKAVKVARAAFERGSVWRNLDASARGRLIYNLAQLIEDHVNEIASLESLDNGKPFNN 112

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           S +    +++  RYFAG  DKI G TIPS+ K+
Sbjct: 113 SYYQTLESTNVLRYFAGCADKIHGLTIPSDGKE 145

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156396842|ref|XP_001637601.1| predicted protein [Nematostella vectensis] gi|156224715|gb|EDO45538.1| predicted protein [Nematostella vectensis]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 74/89 (83%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++AK AFK GS WR +DAS RGKL+YKLA+LID+++ YLASLET+D+GK + DS
Sbjct: 54  DVDKAVKAAKEAFKLGSAWRTMDASMRGKLLYKLAQLIDRDIAYLASLETIDSGKLFSDS 113

Query: 64  IFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
           + D+  +++ FRY+AGW DK+ G TIP++
Sbjct: 114 VGDMQSSANCFRYYAGWADKVTGKTIPAD 142

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|156338531|ref|XP_001619960.1| hypothetical protein NEMVEDRAFT_v1g149662 [Nematostella vectensis] gi|156204114|gb|EDO27860.1| predicted protein [Nematostella vectensis]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 73/88 (82%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++AK AFK GS WR +DAS RGKL+YKLA+LID+++ YLASLET+D+GK + DS
Sbjct: 38  DVDKAVKAAKEAFKLGSAWRTMDASMRGKLLYKLAQLIDRDIAYLASLETIDSGKLFSDS 97

Query: 64  IFDLGCASDTFRYFAGWCDKIEGSTIPS 91
           + D+  +++ FRY+AGW DK+ G TIP+
Sbjct: 98  VGDMQSSANCFRYYAGWADKVTGKTIPA 125

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
ZFIN|ZDB-GENE-011010-3	518	aldh1a2 "aldehyde dehydrogenas	0.92	0.177	0.580	3e-24
RGD|628662	512	Aldh1a3 "aldehyde dehydrogenas	0.91	0.177	0.593	4.8e-24
MGI|MGI:1861722	512	Aldh1a3 "aldehyde dehydrogenas	0.91	0.177	0.583	6.2e-24
UNIPROTKB|I3LK50	167	ALDH1A3 "Uncharacterized prote	0.87	0.520	0.588	1.4e-23
UNIPROTKB|H0YKF9	145	ALDH1A3 "Aldehyde dehydrogenas	0.91	0.627	0.562	1.8e-23
UNIPROTKB|E2R543	512	ALDH1A3 "Uncharacterized prote	0.91	0.177	0.583	2.9e-23
UNIPROTKB|F1MHR3	490	LOC534200 "Uncharacterized pro	0.91	0.185	0.572	3.1e-23
UNIPROTKB|E1BT93	519	ALDH2 "Uncharacterized protein	0.88	0.169	0.606	6.4e-23
UNIPROTKB|P47895	512	ALDH1A3 "Aldehyde dehydrogenas	0.91	0.177	0.562	7.9e-23
MGI|MGI:99600	519	Aldh2 "aldehyde dehydrogenase	0.87	0.167	0.590	8.3e-23

ZFIN|ZDB-GENE-011010-3 aldh1a2 "aldehyde dehydrogenase 1 family, member A2" [Danio rerio (taxid:7955)]

 Score = 283 (104.7 bits), Expect = 3.0e-24, P = 3.0e-24
 Identities = 54/93 (58%), Positives = 73/93 (78%)

Query:     3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
             ADVDKAV++A++AF  GSVWR +DAS RGKL++KLA+L++++  YLA+LE+LD+GKP+  
Sbjct:    75 ADVDKAVQAARSAFSLGSVWRKMDASERGKLLFKLADLVERDSAYLATLESLDSGKPFLP 134

Query:    63 SIF-DLGCASDTFRYFAGWCDKIEGSTIPSESK 94
               F DL     TFRY+AGW DKI GSTIP + +
Sbjct:   135 CFFVDLQGIIKTFRYYAGWADKIHGSTIPIDGE 167

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0042573 "retinoic acid metabolic process" evidence=ISS

GO:0031016 "pancreas development" evidence=IMP

GO:0022011 "myelination in peripheral nervous system" evidence=IMP

GO:0022010 "central nervous system myelination" evidence=IMP

GO:0042572 "retinol metabolic process" evidence=IGI

GO:0048793 "pronephros development" evidence=IMP

GO:0031101 "fin regeneration" evidence=IMP

GO:0039023 "pronephric duct morphogenesis" evidence=IGI;IMP

GO:0048703 "embryonic viscerocranium morphogenesis" evidence=IMP

GO:0048593 "camera-type eye morphogenesis" evidence=IMP

GO:0060325 "face morphogenesis" evidence=IMP

GO:0048384 "retinoic acid receptor signaling pathway" evidence=IMP

GO:0048318 "axial mesoderm development" evidence=IMP

GO:0048339 "paraxial mesoderm development" evidence=IMP

GO:0033339 "pectoral fin development" evidence=IMP

GO:0001889 "liver development" evidence=IMP

GO:0061131 "pancreas field specification" evidence=IMP

GO:0048546 "digestive tract morphogenesis" evidence=IMP

GO:0009952 "anterior/posterior pattern specification" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IMP

RGD|628662 Aldh1a3 "aldehyde dehydrogenase 1 family, member A3" [Rattus norvegicus (taxid:10116)]

 Score = 281 (104.0 bits), Expect = 4.8e-24, P = 4.8e-24
 Identities = 57/96 (59%), Positives = 76/96 (79%)

Query:     4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
             DVDKAVE+A+AAF+RGS WR LDA  RG+L+++LA+LI+++   LA+LET+D GKP+  +
Sbjct:    70 DVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLIERDRAILATLETMDTGKPFLHA 129

Query:    64 IF-DL-GCASDTFRYFAGWCDKIEGSTIPSESKDNI 97
              F DL GC   TFRYFAGW DKI+G TIP++  DN+
Sbjct:   130 FFVDLEGCIK-TFRYFAGWADKIQGRTIPTD--DNV 162

GO:0001758 "retinal dehydrogenase activity" evidence=IMP

GO:0001822 "kidney development" evidence=IEP

GO:0002072 "optic cup morphogenesis involved in camera-type eye development" evidence=IEA;ISO

GO:0002138 "retinoic acid biosynthetic process" evidence=IEA;IEP;ISO;IMP

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=IEA;ISO

GO:0004030 "aldehyde dehydrogenase [NAD(P)+

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=NAS

GO:0021768 "nucleus accumbens development" evidence=IEA;ISO

GO:0021983 "pituitary gland development" evidence=IEP

GO:0031076 "embryonic camera-type eye development" evidence=ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042572 "retinol metabolic process" evidence=IEA

GO:0042573 "retinoic acid metabolic process" evidence=ISO

GO:0042574 "retinal metabolic process" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043065 "positive regulation of apoptotic process" evidence=IEA;ISO

GO:0048048 "embryonic eye morphogenesis" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0060166 "olfactory pit development" evidence=IEA;ISO

GO:0060324 "face development" evidence=IEA;ISO

GO:0070324 "thyroid hormone binding" evidence=IEA;ISO

GO:0070403 "NAD+ binding" evidence=IEA;ISO

MGI|MGI:1861722 Aldh1a3 "aldehyde dehydrogenase family 1, subfamily A3" [Mus musculus (taxid:10090)]

 Score = 280 (103.6 bits), Expect = 6.2e-24, P = 6.2e-24
 Identities = 56/96 (58%), Positives = 76/96 (79%)

Query:     4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
             DVDKAVE+A+AAF+RGS WR LDA  RG+L+++LA+L++++   LA+LET+D GKP+  +
Sbjct:    70 DVDKAVEAAQAAFQRGSPWRRLDALSRGQLLHQLADLVERDRAILATLETMDTGKPFLHA 129

Query:    64 IF-DL-GCASDTFRYFAGWCDKIEGSTIPSESKDNI 97
              F DL GC   TFRYFAGW DKI+G TIP++  DN+
Sbjct:   130 FFVDLEGCIK-TFRYFAGWADKIQGRTIPTD--DNV 162

GO:0001758 "retinal dehydrogenase activity" evidence=ISO

GO:0002072 "optic cup morphogenesis involved in camera-type eye development" evidence=IGI

GO:0002138 "retinoic acid biosynthetic process" evidence=ISO;IDA

GO:0004028 "3-chloroallyl aldehyde dehydrogenase activity" evidence=TAS

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=IDA

GO:0004030 "aldehyde dehydrogenase [NAD(P)+

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0021768 "nucleus accumbens development" evidence=IMP

GO:0031076 "embryonic camera-type eye development" evidence=IGI

GO:0042573 "retinoic acid metabolic process" evidence=ISO;IGI;IMP

GO:0042574 "retinal metabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=IGI;IMP

GO:0048048 "embryonic eye morphogenesis" evidence=IGI;IMP

GO:0048386 "positive regulation of retinoic acid receptor signaling pathway" evidence=ISA

GO:0055114 "oxidation-reduction process" evidence=ISO;IDA;TAS

GO:0060166 "olfactory pit development" evidence=IMP

GO:0060324 "face development" evidence=IGI

GO:0070324 "thyroid hormone binding" evidence=IPI

GO:0070403 "NAD+ binding" evidence=IDA

UNIPROTKB|I3LK50 ALDH1A3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 53/90 (58%), Positives = 71/90 (78%)

Query:     4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
             DVDKAVE+A+AAF+RGS WR LDA  RG+L+++LA+L++++   LA+LET+D GKP+  +
Sbjct:    70 DVDKAVEAAQAAFQRGSPWRRLDALSRGRLLHQLADLVERDRTILATLETMDTGKPFLHA 129

Query:    64 IF-DL-GCASDTFRYFAGWCDKIEGSTIPS 91
              F DL GC   T RYFAGW DKI+G TIP+
Sbjct:   130 FFIDLEGCIK-TLRYFAGWADKIQGKTIPT 158

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|H0YKF9 ALDH1A3 "Aldehyde dehydrogenase family 1 member A3" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 54/96 (56%), Positives = 74/96 (77%)

Query:     4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
             DVDKAVE+A+ AF+RGS WR LDA  RG+L+++LA+L++++   LA+LET+D GKP+  +
Sbjct:    42 DVDKAVEAAQVAFQRGSPWRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHA 101

Query:    64 IF-DL-GCASDTFRYFAGWCDKIEGSTIPSESKDNI 97
              F DL GC   T RYFAGW DKI+G TIP++  DN+
Sbjct:   102 FFIDLEGCIR-TLRYFAGWADKIQGKTIPTD--DNV 134

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|E2R543 ALDH1A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 274 (101.5 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 56/96 (58%), Positives = 74/96 (77%)

Query:     4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
             DVDKAVE+A AAF+RGS WR LDA GRG L+++LA+L++++   LA+LET+D GKP+  +
Sbjct:    70 DVDKAVEAAHAAFQRGSPWRRLDALGRGWLLHQLADLVERDRAILATLETMDTGKPFLHA 129

Query:    64 IF-DL-GCASDTFRYFAGWCDKIEGSTIPSESKDNI 97
              F DL GC   T RYFAGW DKI+G TIP++  DN+
Sbjct:   130 FFIDLEGCIK-TLRYFAGWADKIQGRTIPTD--DNV 162

GO:0070403 "NAD+ binding" evidence=IEA

GO:0070324 "thyroid hormone binding" evidence=IEA

GO:0060324 "face development" evidence=IEA

GO:0060166 "olfactory pit development" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042574 "retinal metabolic process" evidence=IEA

GO:0021768 "nucleus accumbens development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004030 "aldehyde dehydrogenase [NAD(P)+

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=IEA

GO:0002138 "retinoic acid biosynthetic process" evidence=IEA

GO:0002072 "optic cup morphogenesis involved in camera-type eye development" evidence=IEA

UNIPROTKB|F1MHR3 LOC534200 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 273 (101.2 bits), Expect = 3.1e-23, P = 3.1e-23
 Identities = 55/96 (57%), Positives = 74/96 (77%)

Query:     4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
             DVDKAVE+A+AAF+RGS WR LDA  RG+L+ +LA+L++++   LA+LET+D GKP+  +
Sbjct:    48 DVDKAVEAAQAAFQRGSPWRRLDAPSRGRLLQQLADLVERDRAVLATLETMDTGKPFLHA 107

Query:    64 IF-DL-GCASDTFRYFAGWCDKIEGSTIPSESKDNI 97
              F DL GC   T RYFAGW DKI+G TIP++  DN+
Sbjct:   108 FFIDLEGCIK-TLRYFAGWADKIQGRTIPTD--DNV 140

GO:0070403 "NAD+ binding" evidence=IEA

GO:0070324 "thyroid hormone binding" evidence=IEA

GO:0060324 "face development" evidence=IEA

GO:0060166 "olfactory pit development" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042574 "retinal metabolic process" evidence=IEA

GO:0021768 "nucleus accumbens development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004030 "aldehyde dehydrogenase [NAD(P)+

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=IEA

GO:0002138 "retinoic acid biosynthetic process" evidence=IEA

GO:0002072 "optic cup morphogenesis involved in camera-type eye development" evidence=IEA

UNIPROTKB|E1BT93 ALDH2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 6.4e-23, P = 6.4e-23
 Identities = 54/89 (60%), Positives = 67/89 (75%)

Query:     3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
             ADVDKAV++A+AAF+ GS WR +DAS RGKL+ +LA+LI+++  YLA+LETLDNGKPY  
Sbjct:    76 ADVDKAVKAARAAFQLGSPWRRMDASHRGKLLNRLADLIERDRAYLAALETLDNGKPYSI 135

Query:    63 S-IFDLGCASDTFRYFAGWCDKIEGSTIP 90
             S + DL       RYFAGW DK  G TIP
Sbjct:   136 SYLVDLDMVVKCLRYFAGWSDKFHGKTIP 164

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|P47895 ALDH1A3 "Aldehyde dehydrogenase family 1 member A3" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 7.9e-23, P = 7.9e-23
 Identities = 54/96 (56%), Positives = 74/96 (77%)

Query:     4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
             DVDKAVE+A+ AF+RGS WR LDA  RG+L+++LA+L++++   LA+LET+D GKP+  +
Sbjct:    70 DVDKAVEAAQVAFQRGSPWRRLDALSRGRLLHQLADLVERDRATLAALETMDTGKPFLHA 129

Query:    64 IF-DL-GCASDTFRYFAGWCDKIEGSTIPSESKDNI 97
              F DL GC   T RYFAGW DKI+G TIP++  DN+
Sbjct:   130 FFIDLEGCIR-TLRYFAGWADKIQGKTIPTD--DNV 162

GO:0002072 "optic cup morphogenesis involved in camera-type eye development" evidence=IEA

GO:0002138 "retinoic acid biosynthetic process" evidence=IEA

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=IEA

GO:0021768 "nucleus accumbens development" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0060166 "olfactory pit development" evidence=IEA

GO:0060324 "face development" evidence=IEA

GO:0070324 "thyroid hormone binding" evidence=IEA

GO:0070403 "NAD+ binding" evidence=IEA

GO:0042572 "retinol metabolic process" evidence=IEA

GO:0042573 "retinoic acid metabolic process" evidence=IDA

GO:0042574 "retinal metabolic process" evidence=IDA

GO:0004030 "aldehyde dehydrogenase [NAD(P)+

GO:0005737 "cytoplasm" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0048048 "embryonic eye morphogenesis" evidence=ISS

MGI|MGI:99600 Aldh2 "aldehyde dehydrogenase 2, mitochondrial" [Mus musculus (taxid:10090)]

 Score = 270 (100.1 bits), Expect = 8.3e-23, P = 8.3e-23
 Identities = 52/88 (59%), Positives = 67/88 (76%)

Query:     4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
             DVDKAV++A+AAF+ GS WR +DAS RG+L+Y+LA+LI+++  YLA+LETLDNGKPY  S
Sbjct:    77 DVDKAVKAARAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVIS 136

Query:    64 -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
              + DL       RY+AGW DK  G TIP
Sbjct:   137 YLVDLDMVLKCLRYYAGWADKYHGKTIP 164

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0070404 "NADH binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P47895	AL1A3_HUMAN	1, ., 2, ., 1, ., 5	0.5473	0.92	0.1796	yes	N/A
O34660	ALDH4_BACSU	1, ., 2, ., 1, ., 3	0.5111	0.88	0.1777	yes	N/A
Q9JHW9	AL1A3_MOUSE	1, ., 2, ., 1, ., 5	0.5684	0.92	0.1796	yes	N/A
Q8K4D8	AL1A3_RAT	1, ., 2, ., 1, ., 5	0.5789	0.92	0.1796	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	100
cd07141	481	cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retin	1e-43
cd07091	476	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH	4e-37
cd07114	457	cd07114, ALDH_DhaS, Uncharacterized Candidatus pel	3e-32
pfam00171	459	pfam00171, Aldedh, Aldehyde dehydrogenase family	3e-29
cd07115	453	cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens	3e-29
cd07144	484	cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisi	5e-29
cd07140	486	cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate	6e-27
cd07142	476	cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogen	7e-27
cd07143	481	cd07143, ALDH_AldA_AN0554, Aspergillus nidulans al	1e-26
cd07078	432	cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrog	2e-25
cd07109	454	cd07109, ALDH_AAS00426, Uncharacterized Saccharopo	8e-24
COG1012	472	COG1012, PutA, NAD-dependent aldehyde dehydrogenas	2e-23
PLN02466	538	PLN02466, PLN02466, aldehyde dehydrogenase family	9e-23
cd07119	482	cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-de	1e-22
cd07112	462	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+	2e-22
cd06534	367	cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehyd	7e-22
cd07103	451	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succina	6e-20
cd07559	480	cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophu	2e-19
cd07093	455	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogen	2e-19
cd07117	475	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylo	7e-19
cd07090	457	cd07090, ALDH_F9_TMBADH, NAD+-dependent 4-trimethy	8e-19
TIGR01804	467	TIGR01804, BADH, glycine betaine aldehyde dehydrog	1e-18
TIGR02299	488	TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate	2e-18
cd07113	477	cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dep	2e-18
cd07088	468	cd07088, ALDH_LactADH-AldA, Escherichia coli lacta	3e-18
PLN02766	501	PLN02766, PLN02766, coniferyl-aldehyde dehydrogena	9e-18
PRK13252	488	PRK13252, PRK13252, betaine aldehyde dehydrogenase	6e-17
cd07092	450	cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-d	9e-17
PRK13473	475	PRK13473, PRK13473, gamma-aminobutyraldehyde dehyd	1e-16
cd07106	446	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofac	2e-16
cd07118	454	cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbos	3e-16
cd07097	473	cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+	4e-16
cd07116	479	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD	7e-16
cd07110	456	cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehy	4e-15
PLN02467	503	PLN02467, PLN02467, betaine aldehyde dehydrogenase	5e-15
cd07108	457	cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-d	6e-15
PRK09847	494	PRK09847, PRK09847, gamma-glutamyl-gamma-aminobuty	1e-14
cd07145	456	cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcu	1e-14
cd07107	456	cd07107, ALDH_PhdK-like, Nocardioides 2-carboxyben	3e-14
cd07131	478	cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candi	7e-14
cd07111	480	cd07111, ALDH_F16, Aldehyde dehydrogenase family 1	1e-13
cd07086	478	cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha	8e-13
cd07085	478	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyd	8e-13
TIGR01780	448	TIGR01780, SSADH, succinate-semialdehyde dehydroge	9e-13
cd07150	451	cd07150, ALDH_VaniDH_like, Pseudomonas putida vani	6e-12
cd07124	512	cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-	4e-11
PLN02278	498	PLN02278, PLN02278, succinic semialdehyde dehydrog	2e-10
cd07100	429	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tubercul	4e-10
cd07105	432	cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogena	5e-10
cd07139	471	cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculo	5e-10
TIGR03374	472	TIGR03374, ABALDH, 1-pyrroline dehydrogenase	7e-10
cd07120	455	cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida al	1e-09
cd07094	453	cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NA	5e-09
cd07147	452	cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase f	2e-08
TIGR03216	481	TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semia	3e-08
PRK11241	482	PRK11241, gabD, succinate-semialdehyde dehydrogena	6e-08
cd07149	453	cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) wi	7e-08
cd07104	431	cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)	1e-07
PRK11904	1038	PRK11904, PRK11904, bifunctional proline dehydroge	1e-07
cd07130	474	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-amin	1e-07
cd07083	500	cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent	3e-07
cd07099	453	cd07099, ALDH_DDALDH, Methylomonas sp	4e-07
cd07082	473	cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-ph	6e-07
cd07125	518	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-car	6e-07
TIGR03240	484	TIGR03240, arg_catab_astD, succinylglutamic semial	8e-07
PRK03137	514	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehy	1e-06
cd07095	431	cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-sem	2e-06
PLN02419	604	PLN02419, PLN02419, methylmalonate-semialdehyde de	6e-06
TIGR01722	477	TIGR01722, MMSDH, methylmalonic acid semialdehyde	8e-06
PRK09457	487	PRK09457, astD, succinylglutamic semialdehyde dehy	9e-06
COG4230	769	COG4230, COG4230, Delta 1-pyrroline-5-carboxylate	1e-05
cd07098	465	cd07098, ALDH_F15-22, Aldehyde dehydrogenase famil	2e-05
cd07138	466	cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-ox	2e-05
TIGR01238	500	TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carb	3e-05
PLN02315	508	PLN02315, PLN02315, aldehyde dehydrogenase family	5e-05
cd07148	455	cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL031	7e-05
TIGR01237	511	TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carb	1e-04
cd07089	459	cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-	3e-04
cd07146	451	cd07146, ALDH_PhpJ, Streptomyces putative phosphon	5e-04
cd07151	465	cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxyb	0.001
PRK11905	1208	PRK11905, PRK11905, bifunctional proline dehydroge	0.001
cd07084	442	cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+	0.002
TIGR03250	472	TIGR03250, PhnAcAld_DH, putative phosphonoacetalde	0.002
PRK10090	409	PRK10090, PRK10090, aldehyde dehydrogenase A; Prov	0.003

>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like

 Score =  147 bits (372), Expect = 1e-43
 Identities = 56/93 (60%), Positives = 69/93 (74%), Gaps = 1/93 (1%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVDKAV++A+AAFK GS WR +DAS RG+L+ KLA+LI+++  YLASLETLDNGKP+  
Sbjct: 44  ADVDKAVKAARAAFKLGSPWRTMDASERGRLLNKLADLIERDRAYLASLETLDNGKPFSK 103

Query: 63  SIF-DLGCASDTFRYFAGWCDKIEGSTIPSESK 94
           S   DL  A    RY+AGW DKI G TIP +  
Sbjct: 104 SYLVDLPGAIKVLRYYAGWADKIHGKTIPMDGD 136

NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. Length = 481

>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins

 Score =  129 bits (327), Expect = 4e-37
 Identities = 47/93 (50%), Positives = 66/93 (70%), Gaps = 2/93 (2%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            DVD AV++A+AAF+ G  WR +D   RG+L+ KLA+LI+++ D LA+LE+LDNGKP E+
Sbjct: 41  EDVDAAVKAARAAFETGW-WRKMDPRERGRLLNKLADLIERDRDELAALESLDNGKPLEE 99

Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
           S   D+  +    RY+AGW DKI+G TIP +  
Sbjct: 100 SAKGDVALSIKCLRYYAGWADKIQGKTIPIDGN 132

ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. Also included in this subfamily is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial, homotetramers that oxidize acetaldehyde and glycolaldehyde, as well as, the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Also included is the AldA aldehyde dehydrogenase of Aspergillus nidulans (locus AN0554), the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) of Saccharomyces cerevisiae, and other similar sequences. Length = 476

>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like

 Score =  116 bits (292), Expect = 3e-32
 Identities = 44/94 (46%), Positives = 63/94 (67%), Gaps = 1/94 (1%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           +ADVD+AV +A+AAF  G  WR L  + RGKL+ +LA+LI+ N + LA LET DNGK   
Sbjct: 18  AADVDRAVAAARAAF-EGGAWRKLTPTERGKLLRRLADLIEANAEELAELETRDNGKLIR 76

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           ++   +   ++ +RY+AG  DKIEG+ IP +  D
Sbjct: 77  ETRAQVRYLAEWYRYYAGLADKIEGAVIPVDKGD 110

Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD. Length = 457

>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family

 Score =  107 bits (271), Expect = 3e-29
 Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 3/90 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            DVD AV +A+AAFK    W     S R  ++ K A+L+++  D LA LETL+ GKP  +
Sbjct: 29  EDVDAAVAAARAAFK---AWAKTPPSERAAILLKAADLLEERRDELAELETLETGKPLAE 85

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
           +  ++  A DT RY+AG   K+EG T+PS+
Sbjct: 86  ARGEVPRAIDTLRYYAGLARKLEGETLPSD 115

This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor. The family includes the following members: The prototypical members are the aldehyde dehydrogenases EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This family also includes omega crystallin, an eye lens protein from squid and octopus that has little aldehyde dehydrogenase activity. Length = 459

>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like

 Score =  107 bits (270), Expect = 3e-29
 Identities = 46/89 (51%), Positives = 61/89 (68%), Gaps = 4/89 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            DVD AV +A+AAF+    W  +D + RG+++++LAELI  N D LA LE+LD GKP   
Sbjct: 19  EDVDAAVAAARAAFEA---WSAMDPAERGRILWRLAELILANADELARLESLDTGKPIRA 75

Query: 63  S-IFDLGCASDTFRYFAGWCDKIEGSTIP 90
           +   D+  A+DTFRY+AGW DKIEG  IP
Sbjct: 76  ARRLDVPRAADTFRYYAGWADKIEGEVIP 104

4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD. Length = 453

>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like

 Score =  107 bits (269), Expect = 5e-29
 Identities = 44/93 (47%), Positives = 63/93 (67%), Gaps = 3/93 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE- 61
            DVDKAV++A+ AF+  S W  +    RG+L+ KLA+L++KN D LA++E LD+GKPY  
Sbjct: 45  EDVDKAVKAARKAFE--SWWSKVTGEERGELLDKLADLVEKNRDLLAAIEALDSGKPYHS 102

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
           +++ DL       RY+AGW DKI+G TIP+   
Sbjct: 103 NALGDLDEIIAVIRYYAGWADKIQGKTIPTSPN 135

NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD. Length = 484

>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L

 Score =  101 bits (254), Expect = 6e-27
 Identities = 43/89 (48%), Positives = 66/89 (74%), Gaps = 2/89 (2%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            DVD+AV +AK AF+ G  W  ++A  RG+L+Y+LA+L++++ + LA++E+LD+G  Y  
Sbjct: 43  EDVDRAVAAAKEAFENGE-WGKMNARDRGRLMYRLADLMEEHQEELATIESLDSGAVYTL 101

Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGSTIP 90
           ++   +G +  TFRYFAGWCDKI+G TIP
Sbjct: 102 ALKTHVGMSIQTFRYFAGWCDKIQGKTIP 130

10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids. Length = 486

>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like

 Score =  101 bits (254), Expect = 7e-27
 Identities = 40/92 (43%), Positives = 63/92 (68%), Gaps = 2/92 (2%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           + DVD+AV++A+ AF  G  W  +    R +++ + A+L++K+ D LA+LET DNGKPYE
Sbjct: 40  AEDVDRAVKAARKAFDEGP-WPRMTGYERSRILLRFADLLEKHADELAALETWDNGKPYE 98

Query: 62  DS-IFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
            +   ++  A+  FRY+AGW DKI G T+P++
Sbjct: 99  QARYAEVPLAARLFRYYAGWADKIHGMTLPAD 130

Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Length = 476

>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like

 Score =  101 bits (252), Expect = 1e-26
 Identities = 44/93 (47%), Positives = 62/93 (66%), Gaps = 2/93 (2%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD AVE A AAF+       +  S RG+ + KLA+L+++N+DYLAS+E LDNGK +  
Sbjct: 44  ADVDIAVEVAHAAFE-TDWGLKVSGSKRGRCLSKLADLMERNLDYLASIEALDNGKTFGT 102

Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
           +   D+  ++DTFRY+ GW DKI G  I ++ K
Sbjct: 103 AKRVDVQASADTFRYYGGWADKIHGQVIETDIK 135

NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD. Length = 481

>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family

 Score = 97.3 bits (243), Expect = 2e-25
 Identities = 37/90 (41%), Positives = 58/90 (64%), Gaps = 3/90 (3%)

Query: 6  DKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF 65
          D AV +A+AAFK    W  L  + R  ++ KLA+L+++  + LA+LETL+ GKP E+++ 
Sbjct: 1  DAAVAAARAAFKA---WAALPPAERAAILRKLADLLEERREELAALETLETGKPIEEALG 57

Query: 66 DLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
          ++  A+DTFRY+AG   ++ G  IPS    
Sbjct: 58 EVARAADTFRYYAGLARRLHGEVIPSPDPG 87

The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer to the cofactor and formation of a thioacylenzyme intermediate. Hydrolysis of the thioacylenzyme and release of the carboxylic acid product occurs, and in most cases, the reduced cofactor dissociates from the enzyme. The evolutionary phylogenetic tree of ALDHs appears to have an initial bifurcation between what has been characterized as the classical aldehyde dehydrogenases, the ALDH family (ALDH) and extended family members or aldehyde dehydrogenase-like (ALDH-like) proteins. The ALDH proteins are represented by enzymes which share a number of highly conserved residues necessary for catalysis and cofactor binding and they include such proteins as retinal dehydrogenase, 10-formyltetrahydrofolate dehydrogenase, non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase, delta(1)-pyrroline-5-carboxylate dehydrogenases, alpha-ketoglutaric semialdehyde dehydrogenase, alpha-aminoadipic semialdehyde dehydrogenase, coniferyl aldehyde dehydrogenase and succinate-semialdehyde dehydrogenase. Included in this larger group are all human, Arabidopsis, Tortula, fungal, protozoan, and Drosophila ALDHs identified in families ALDH1 through ALDH22 with the exception of families ALDH18, ALDH19, and ALDH20 which are present in the ALDH-like group. Length = 432

>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like

 Score = 93.1 bits (232), Expect = 8e-24
 Identities = 39/90 (43%), Positives = 58/90 (64%), Gaps = 2/90 (2%)

Query: 1   MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60
            +ADVD+AV++A+ AF+ G  W  L  + RG+L+ ++A LI ++ D LA LE+LD GKP 
Sbjct: 17  GAADVDRAVQAARRAFESG--WLRLSPAERGRLLLRIARLIREHADELARLESLDTGKPL 74

Query: 61  EDSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
             +  D+  A+  F Y+ G  DK+ G TIP
Sbjct: 75  TQARADVEAAARYFEYYGGAADKLHGETIP 104

Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD. Length = 454

>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy production and conversion]

 Score = 92.4 bits (230), Expect = 2e-23
 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 3/89 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            DVD AV +A+AAF+    W  L A  R  ++ ++A+L++   + LA+L TL+ GKP  +
Sbjct: 36  EDVDAAVAAARAAFEA---WSRLSAEERAAILRRIADLLEARAEELAALITLETGKPISE 92

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPS 91
           +  ++  A+D  RY+A    ++EG TIP+
Sbjct: 93  ARGEIARAADFIRYYAEEARRLEGETIPT 121

Length = 472

>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member

 Score = 90.3 bits (224), Expect = 9e-23
 Identities = 41/91 (45%), Positives = 61/91 (67%), Gaps = 2/91 (2%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DV++AV +A+ AF  G  W  + A  R +++ + A+L++K+ D LA+LET DNGKPYE S
Sbjct: 96  DVNRAVAAARKAFDEGP-WPKMTAYERSRILLRFADLLEKHNDELAALETWDNGKPYEQS 154

Query: 64  IF-DLGCASDTFRYFAGWCDKIEGSTIPSES 93
              +L   +  FRY+AGW DKI G T+P++ 
Sbjct: 155 AKAELPMFARLFRYYAGWADKIHGLTVPADG 185

Length = 538

>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like

 Score = 90.1 bits (224), Expect = 1e-22
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            D  +A+ +A+ AF  G  W +L A  R  L++++A+ I ++ + LA LETL+ GK   +
Sbjct: 35  EDAKRAIAAARRAFDSGE-WPHLPAQERAALLFRIADKIREDAEELARLETLNTGKTLRE 93

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPS 91
           S  D+   ++ FRY+AG   K  G     
Sbjct: 94  SEIDIDDVANCFRYYAGLATKETGEVYDV 122

Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde. Length = 482

>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like

 Score = 89.2 bits (222), Expect = 2e-22
 Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 2/93 (2%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           +ADVD+AV +A+ AF+ G VW  L  + R  ++ +LA+LI+ + D LA LETLD GKP  
Sbjct: 23  AADVDRAVAAARRAFESG-VWSRLSPAERKAVLLRLADLIEAHRDELALLETLDMGKPIS 81

Query: 62  DSI-FDLGCASDTFRYFAGWCDKIEGSTIPSES 93
           D++  D+  A++TFR++A   DK+ G   P+  
Sbjct: 82  DALAVDVPSAANTFRWYAEAIDKVYGEVAPTGP 114

NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD. Length = 462

>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase superfamily

 Score = 87.3 bits (217), Expect = 7e-22
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)

Query: 10 ESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGC 69
           +A+AAFK    W  L  + R  ++ K+A+L+++  + LA+LETL+ GKP E+++ ++  
Sbjct: 1  AAARAAFKA---WAALPPAERAAILRKIADLLEERREELAALETLETGKPIEEALGEVAR 57

Query: 70 ASDTFRYFAGWCDKIEGSTIPSESKD 95
          A DTFRY AG  DK+ G  +PS    
Sbjct: 58 AIDTFRYAAGLADKLGGPELPSPDPG 83

The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer to the cofactor and formation of a thioacylenzyme intermediate. Hydrolysis of the thioacylenzyme and release of the carboxylic acid product occurs, and in most cases, the reduced cofactor dissociates from the enzyme. The evolutionary phylogenetic tree of ALDHs appears to have an initial bifurcation between what has been characterized as the classical aldehyde dehydrogenases, the ALDH family (ALDH) and extended family members or aldehyde dehydrogenase-like (ALDH-L) proteins. The ALDH proteins are represented by enzymes which share a number of highly conserved residues necessary for catalysis and cofactor binding and they include such proteins as retinal dehydrogenase, 10-formyltetrahydrofolate dehydrogenase, non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase, delta(1)-pyrroline-5-carboxylate dehydrogenases, alpha-ketoglutaric semialdehyde dehydrogenase, alpha-aminoadipic semialdehyde dehydrogenase, coniferyl aldehyde dehydrogenase and succinate-semialdehyde dehydrogenase. Included in this larger group are all human, Arabidopsis, Tortula, fungal, protozoan, and Drosophila ALDHs identified in families ALDH1 through ALDH22 with the exception of families ALDH18, ALDH19, and ALDH20 which are present in the ALDH-like group. The ALDH-like group is represented by such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group. Length = 367

>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like

 Score = 82.1 bits (204), Expect = 6e-20
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           +AD D A+++A AAFK    WR   A  R  ++ + A+LI +  + LA L TL+ GKP  
Sbjct: 18  AADADAAIDAAAAAFK---TWRKTTARERAAILRRWADLIRERAEDLARLLTLEQGKPLA 74

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
           ++  ++  A+    +FA    +I G TIPS +   
Sbjct: 75  EARGEVDYAASFLEWFAEEARRIYGRTIPSPAPGK 109

Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species. Length = 451

>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-E 61
            DVD AV++A  AFK    W     + R  ++ K+A+ I++N++ LA  ETLDNGKP  E
Sbjct: 38  EDVDLAVDAAHEAFKT---WGKTSVAERANILNKIADRIEENLELLAVAETLDNGKPIRE 94

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGS 87
               D+  A D FRYFAG     EGS
Sbjct: 95  TLAADIPLAIDHFRYFAGVIRAQEGS 120

Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences. Length = 480

>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like

 Score = 80.7 bits (200), Expect = 2e-19
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 4/91 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A+VD AV +AK AF     W  +  + R ++++K+A+LI+   D LA LE+LD GKP   
Sbjct: 19  AEVDAAVAAAKEAFPG---WSRMSPAERARILHKVADLIEARADELALLESLDTGKPITL 75

Query: 63  -SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
               D+  A+  FR+FA +  +++G + P +
Sbjct: 76  ARTRDIPRAAANFRFFADYILQLDGESYPQD 106

In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone. Length = 455

>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like

 Score = 79.4 bits (196), Expect = 7e-19
 Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 4/86 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-E 61
           ADVD+AV++A+ AFK    WR    + R  ++ K+A++ID+N + LA +ETLDNGKP  E
Sbjct: 38  ADVDRAVKAAQEAFKT---WRKTTVAERANILNKIADIIDENKELLAMVETLDNGKPIRE 94

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGS 87
               D+  A+D FRYFAG     EGS
Sbjct: 95  TRAVDIPLAADHFRYFAGVIRAEEGS 120

Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD. Length = 475

>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1

 Score = 79.3 bits (196), Expect = 8e-19
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            DVD AV+SAKAA K    W       RG+++ K A+L+ +  D +A LET+DNGKP E+
Sbjct: 19  EDVDLAVKSAKAAQK---EWSATSGMERGRILRKAADLLRERNDEIARLETIDNGKPIEE 75

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIP 90
           +  D+  ++D   Y+AG    + G  +P
Sbjct: 76  ARVDIDSSADCLEYYAGLAPTLSGEHVP 103

NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis. Length = 457

>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase

 Score = 78.3 bits (193), Expect = 1e-18
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            DV++A+ +A+ A      W  +    RG+++ + A+LI +  + LA LETLD GK  ++
Sbjct: 35  EDVERAIAAARRAQGE---WAAMSPMERGRILRRAADLIRERNEELAKLETLDTGKTLQE 91

Query: 63  SIF-DLGCASDTFRYFAGWCDKIEGSTIPS 91
           +I  D+   +D F +FAG    + G  IP 
Sbjct: 92  TIVADMDSGADVFEFFAGLAPALNGEIIPL 121

Under osmotic stress, betaine aldehyde dehydrogenase oxidizes glycine betaine aldehyde into the osmoprotectant glycine betaine, via the second of two oxidation steps from exogenously supplied choline or betaine aldehyde. This choline-glycine betaine synthesis pathway can be found in gram-positive and gram-negative bacteria. In Escherichia coli, betaine aldehyde dehydrogenase (betB) is osmotically co-induced with choline dehydrogenase (betA) in the presence of choline. These dehydrogenases are located in a betaine gene cluster with the upstream choline transporter (betT) and transcriptional regulator (betI). Similar to E.coli, betaine synthesis in Staphylococcus xylosus is also influenced by osmotic stress and the presence of choline with genes localized in a functionally equivalent gene cluster. Organization of the betaine gene cluster in Sinorhizobium meliloti and Bacillus subtilis differs from that of E.coli by the absence of upstream choline transporter and transcriptional regulator homologues. Additionally, B.subtilis co-expresses a type II alcohol dehydrogenase with betaine aldehyde dehydrogenase instead of choline dehydrogenase as in E.coli, St.xylosus, and Si.meliloti. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171) [Cellular processes, Adaptations to atypical conditions]. Length = 467

>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase

 Score = 78.3 bits (193), Expect = 2e-18
 Identities = 37/95 (38%), Positives = 61/95 (64%), Gaps = 4/95 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD+A ++AK AFKR   W  L A+ R + ++K+A+LI+++ D +A LE LD G+P   
Sbjct: 38  ADVDRAAKAAKEAFKR---WAELKAAERKRYLHKIADLIEQHADEIAVLECLDCGQPLRQ 94

Query: 63  SIFDLGCASDTFRYFAGWC-DKIEGSTIPSESKDN 96
           +   +  A++ FR+FA  C + ++G T P ++  N
Sbjct: 95  TRQQVIRAAENFRFFADKCEEAMDGRTYPVDTHLN 129

This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring. Length = 488

>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like

 Score = 78.3 bits (193), Expect = 2e-18
 Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 4/91 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD AV SA  AF   S W     + RG+++ +LA+LI+++ + LA LETL +GK    
Sbjct: 37  ADVDAAVASAWRAFV--SAWAKTTPAERGRILLRLADLIEQHGEELAQLETLCSGKSIHL 94

Query: 63  S-IFDLGCASDTFRYFAGWCDKIEGSTI-PS 91
           S  F++G +++  RYFAGW  KI G T+ PS
Sbjct: 95  SRAFEVGQSANFLRYFAGWATKINGETLAPS 125

NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate. Length = 477

>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like

 Score = 77.7 bits (192), Expect = 3e-18
 Identities = 36/97 (37%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           + D D+AV++A+AA K    W  L A  R   + KLA+LI +N D LA L   + GK   
Sbjct: 34  AEDADRAVDAAEAAQKA---WERLPAIERAAYLRKLADLIRENADELAKLIVEEQGKTLS 90

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIPSE-SKDNI 97
            +  ++   +D   Y A W  +IEG  IPS+   +NI
Sbjct: 91  LARVEVEFTADYIDYMAEWARRIEGEIIPSDRPNENI 127

Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD. Length = 468

>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase

 Score = 76.0 bits (187), Expect = 9e-18
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 2/88 (2%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGK-PYE 61
            DVD AV++A+ AF  G  W  +    RG+++ K A+LI+++++ LA+L+T+D GK    
Sbjct: 58  EDVDLAVKAAREAFDHGP-WPRMSGFERGRIMMKFADLIEEHIEELAALDTIDAGKLFAL 116

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTI 89
               D+  A+   RY+AG  DKI G T+
Sbjct: 117 GKAVDIPAAAGLLRYYAGAADKIHGETL 144

Length = 501

>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional

 Score = 73.8 bits (182), Expect = 6e-17
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-E 61
           ADV+ AV SAK   K   +W  + A  R +++ +  +++ +  D LA+LETLD GKP  E
Sbjct: 44  ADVEAAVASAKQGQK---IWAAMTAMERSRILRRAVDILRERNDELAALETLDTGKPIQE 100

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
            S+ D+   +D   Y+AG    +EG  IP
Sbjct: 101 TSVVDIVTGADVLEYYAGLAPALEGEQIP 129

Length = 488

>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like

 Score = 73.5 bits (181), Expect = 9e-17
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 4/86 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD AV +A AAF     WR    + R K + KLA+ I++N + LA+LE+ + GKP   
Sbjct: 19  ADVDAAVAAAHAAFPS---WRRTTPAERSKALLKLADAIEENAEELAALESRNTGKPLHL 75

Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGS 87
               +L  A D FR+FAG    +EG 
Sbjct: 76  VRDDELPGAVDNFRFFAGAARTLEGP 101

NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency. Length = 450

>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase; Provisional

 Score = 72.6 bits (179), Expect = 1e-16
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A VD AV +A AAF     W       R + + KLA+ I++N D  A LE+L+ GKP   
Sbjct: 39  AQVDAAVAAADAAFPE---WSQTTPKERAEALLKLADAIEENADEFARLESLNCGKPLHL 95

Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGS 87
           ++  ++    D FR+FAG    +EG 
Sbjct: 96  ALNDEIPAIVDVFRFFAGAARCLEGK 121

Length = 475

>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like

 Score = 72.6 bits (179), Expect = 2e-16
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 3  ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
          A +D+AV +AKAAF     W       R   +  +A+ I+ N + LA L TL+ GKP  +
Sbjct: 19 AQLDQAVAAAKAAFPG---WSATPLEERRAALLAIADAIEANAEELARLLTLEQGKPLAE 75

Query: 63 SIFDLGCASDTFRYFAG 79
          + F++G A    RY A 
Sbjct: 76 AQFEVGGAVAWLRYTAS 92

Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD. Length = 446

>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone dehydrogenase-like

 Score = 72.0 bits (177), Expect = 3e-16
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 6/95 (6%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVD AV +A+ AF +G  W  +  + R  ++ K+A+LI    + LA +ETL++GKP   +
Sbjct: 20  DVDAAVAAARKAFDKGP-WPRMSGAERAAVLLKVADLIRARRERLALIETLESGKPISQA 78

Query: 64  IFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIG 98
             ++  A+D +RY A     + G     +S +N+G
Sbjct: 79  RGEIEGAADLWRYAASLARTLHG-----DSYNNLG 108

Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase. Length = 454

>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like

 Score = 71.5 bits (176), Expect = 4e-16
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            D D A+ +A AAF     WR      R  ++ K  + ++   + LA L T + GK   +
Sbjct: 37  EDADAAIAAAAAAFPA---WRRTSPEARADILDKAGDELEARKEELARLLTREEGKTLPE 93

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           +  ++  A   FRY+AG   ++ G T+PS    
Sbjct: 94  ARGEVTRAGQIFRYYAGEALRLSGETLPSTRPG 126

Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group. Length = 473

>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like

 Score = 70.9 bits (174), Expect = 7e-16
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-E 61
            D++ A+++A AA +    W     + R  ++ K+A+ ++ N++ LA  ET DNGKP  E
Sbjct: 38  EDIELALDAAHAAKEA---WGKTSVAERANILNKIADRMEANLEMLAVAETWDNGKPVRE 94

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGS 87
               D+  A D FRYFAG     EGS
Sbjct: 95  TLAADIPLAIDHFRYFAGCIRAQEGS 120

Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression. Length = 479

>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like

 Score = 68.5 bits (168), Expect = 4e-15
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 6/97 (6%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           + DVD AV +A+ AF R   W+    + R K +  +AE + +  + LA LE  DNGKP +
Sbjct: 18  AEDVDAAVRAARRAFPR---WKKTTGAERAKYLRAIAEGVRERREELAELEARDNGKPLD 74

Query: 62  DSIFDLGCASDTFRYFAGWCDKIE---GSTIPSESKD 95
           ++ +D+   +  F Y+A   ++++      +P  S+D
Sbjct: 75  EAAWDVDDVAGCFEYYADLAEQLDAKAERAVPLPSED 111

Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine. Length = 456

>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase

 Score = 68.2 bits (167), Expect = 5e-15
 Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 2   SADVDKAVESAKAAFKR--GSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP 59
           + DVD AVE+A+ AFKR  G  W     + R K +  +A  I +    LA LETLD GKP
Sbjct: 44  AEDVDAAVEAARKAFKRNKGKDWARTTGAVRAKYLRAIAAKITERKSELAKLETLDCGKP 103

Query: 60  YEDSIFDLGCASDTFRYFAGWCDKIEG 86
            +++ +D+   +  F Y+A   + ++ 
Sbjct: 104 LDEAAWDMDDVAGCFEYYADLAEALDA 130

Length = 503

>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like

 Score = 68.2 bits (167), Expect = 6e-15
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 4/90 (4%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           +ADVD+AV +AKAAF     W    A  RGKL+ ++A+ ++   + LA L  L+ G    
Sbjct: 18  AADVDRAVAAAKAAFPE---WAATPARERGKLLARIADALEARSEELARLLALETGNALR 74

Query: 62  -DSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
             +  +    +D FRYF G   +++G T+P
Sbjct: 75  TQARPEAAVLADLFRYFGGLAGELKGETLP 104

NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD. Length = 457

>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional

 Score = 67.6 bits (165), Expect = 1e-14
 Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 2/93 (2%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           S D+D+AV +A+  F+RG  W     + R  ++ KLA+L++ + + LA LETLD GKP  
Sbjct: 56  SVDIDRAVSAARGVFERG-DWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIR 114

Query: 62  DSIF-DLGCASDTFRYFAGWCDKIEGSTIPSES 93
            S+  D+  A+   R++A   DK+ G    + S
Sbjct: 115 HSLRDDIPGAARAIRWYAEAIDKVYGEVATTSS 147

Length = 494

>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           +V +A+E A+ A     V  NL A  R K++ K+AELI++  + LA L T++ GKP + S
Sbjct: 22  EVREAIEVAEKAK---DVMSNLPAYKRYKILMKVAELIERRKEELAKLLTIEVGKPIKQS 78

Query: 64  IFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
             ++      F+  A     + G TIP ++ + 
Sbjct: 79  RVEVERTIRLFKLAAEEAKVLRGETIPVDAYEY 111

NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD. Length = 456

>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like

 Score = 66.2 bits (162), Expect = 3e-14
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           +ADVD+AV +A+AAF     WR      R +++ +LA  + ++ + LA ++ LD G P  
Sbjct: 18  AADVDRAVAAARAAFPE---WRATTPLERARMLRELATRLREHAEELALIDALDCGNPVS 74

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIPS 91
             + D+  A+    YFAG   +++G TIP 
Sbjct: 75  AMLGDVMVAAALLDYFAGLVTELKGETIPV 104

Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD. Length = 456

>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like

 Score = 65.1 bits (159), Expect = 7e-14
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           +DVD AVE+A+ AF     WR + A  R + +++ AEL+ K  + LA L T + GKP  +
Sbjct: 37  SDVDAAVEAAREAFP---EWRKVPAPRRAEYLFRAAELLKKRKEELARLVTREMGKPLAE 93

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
              D+  A D  +Y AG   ++ G T+PSE  +
Sbjct: 94  GRGDVQEAIDMAQYAAGEGRRLFGETVPSELPN 126

Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD. Length = 478

>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
             DVD AV +A+ AF+    W  L    R + +Y++A  I K+    A LE+LDNGKP  
Sbjct: 58  EEDVDAAVAAARTAFES---WSALPGHVRARHLYRIARHIQKHQRLFAVLESLDNGKPIR 114

Query: 62  DSI-FDLGCASDTFRYFAGWCDKIE 85
           +S   D+   +  F + AGW   ++
Sbjct: 115 ESRDCDIPLVARHFYHHAGWAQLLD 139

Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence. Length = 480

>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins

 Score = 62.2 bits (152), Expect = 8e-13
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            DV+ AV +A+ AFK    WR + A  RG+++ ++ E + K  + L  L +L+ GK   +
Sbjct: 35  EDVEAAVAAAREAFK---EWRKVPAPRRGEIVRQIGEALRKKKEALGRLVSLEMGKILPE 91

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
            + ++    D   Y  G    + G TIPSE
Sbjct: 92  GLGEVQEMIDICDYAVGLSRMLYGLTIPSE 121

ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105). Length = 478

>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2

 Score = 62.1 bits (152), Expect = 8e-13
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           + +VD AV +AKAAF     W       R ++++K  +L+++N+D LA L TL++GK   
Sbjct: 37  AEEVDAAVAAAKAAFPA---WSATPVLKRQQVMFKFRQLLEENLDELARLITLEHGKTLA 93

Query: 62  DSIFDLG 68
           D+  D+ 
Sbjct: 94  DARGDVL 100

Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD. Length = 478

>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase

 Score = 62.1 bits (151), Expect = 9e-13
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            + + A+ +A  AFK    WR   A  R  L+ K   L+ +N D LA L TL+NGKP ++
Sbjct: 19  DETEAAIRAAYEAFKT---WRATTAKERSSLLRKWYNLMMENKDDLARLITLENGKPLKE 75

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
           +  ++  A+    +FA    ++ G TIPS   D 
Sbjct: 76  AKGEILYAASFLEWFAEEAKRVYGDTIPSPQSDK 109

Succinic semialdehyde dehydrogenase is one of three enzymes constituting 4-aminobutyrate (GABA) degradation in both prokaryotes and eukaryotes, catalyzing the (NAD(P)+)-dependent catabolism reaction of succinic semialdehyde to succinate for metabolism by the citric acid cycle. The EC number depends on the cofactor: 1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and 1.2.1.16 if both can be used. In Escherichia coli, succinic semialdehyde dehydrogenase is located in an unidirectionally transcribed gene cluster encoding enzymes for GABA degradation and is suggested to be cotranscribed with succinic semialdehyde transaminase from a common promoter upstream of SSADH. Similar gene arrangements can be found in characterized Ralstonia eutropha and the genome analysis of Bacillus subtilis. Prokaryotic succinic semialdehyde dehydrogenases (1.2.1.16) share high sequence homology to characterized succinic semialdehyde dehydrogenases from rat and human (1.2.1.24), exhibiting conservation of proposed cofactor binding residues, and putative active sites (G-237 & G-242, C-293 & G-259 respectively of rat SSADH). Eukaryotic SSADH enzymes exclusively utilize NAD+ as a cofactor, exhibiting little to no NADP+ activity. While a NADP+ preference has been detected in prokaryotes in addition to both NADP+- and NAD+-dependencies as in E.coli, Pseudomonas, and Klebsiella pneumoniae. The function of this alternative SSADH currently is unknown, but has been suggested to play a possible role in 4-hydroxyphenylacetic degradation. Just outside the scope of this model, are several sequences belonging to clades scoring between trusted and noise. These sequences may be actual SSADH enzymes, but lack sufficiently close characterized homologs to make a definitive assignment at this time. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070) [Central intermediary metabolism, Other]. Length = 448

>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin dehydrogenase-like

 Score = 59.7 bits (145), Expect = 6e-12
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            D ++A+ +A  AF     W     S R +++ K AE++++  D L  L   + G  Y  
Sbjct: 21  QDAERAIAAAYDAFPA---WAATTPSERERILLKAAEIMERRADDLIDLLIDEGGSTYGK 77

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNI 97
           + F+     +  R  AG C ++ G T+PS+S   +
Sbjct: 78  AWFETTFTPELLRAAAGECRRVRGETLPSDSPGTV 112

Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde. Length = 451

>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            + + AV++A+AAF     WR      R +L+ + A L+ +    LA+   L+ GK + +
Sbjct: 69  EEAEAAVQAARAAFPT---WRRTPPEERARLLLRAAALLRRRRFELAAWMVLEVGKNWAE 125

Query: 63  SIFDLGCASDTFRYFA 78
           +  D+  A D   Y+A
Sbjct: 126 ADADVAEAIDFLEYYA 141

Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. Length = 512

>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A+ + A+ SA  AF     W  L AS R K++ +  +LI  N + LA L TL+ GKP ++
Sbjct: 62  AETNDAIASAHDAFP---SWSKLTASERSKILRRWYDLIIANKEDLAQLMTLEQGKPLKE 118

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           +I ++   +    YFA    ++ G  IPS   D
Sbjct: 119 AIGEVAYGASFLEYFAEEAKRVYGDIIPSPFPD 151

Length = 498

>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like

 Score = 54.4 bits (132), Expect = 4e-10
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 5  VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI 64
          ++ A++ A AAF     WR    + R  L+ KLA+L+ +  D LA L TL+ GKP  ++ 
Sbjct: 1  IEAALDRAHAAFLA---WRKTSFAERAALLRKLADLLRERKDELARLITLEMGKPIAEAR 57

Query: 65 FDLGCASDTFRYFA 78
           ++   +   RY+A
Sbjct: 58 AEVEKCAWICRYYA 71

Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate. Length = 429

>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like

 Score = 54.1 bits (131), Expect = 5e-10
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 4  DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
          D D+AVE+A AAF     W     S R  ++ K A+L++   D        + G     +
Sbjct: 1  DADQAVEAAAAAFPA---WSKTPPSERRDILLKAADLLESRRDEFIEAMMEETGATAAWA 57

Query: 64 IFDLGCASDTFRYFAGWCDKIEGSTIPS 91
           F++  A+   R  A    +I G +IPS
Sbjct: 58 GFNVDLAAGMLREAASLITQIIGGSIPS 85

Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD. Length = 432

>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like

 Score = 54.1 bits (131), Expect = 5e-10
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD AV +A+ AF  G  W  L  + R  ++ +LA+ ++   D LA L T +NG P   
Sbjct: 36  ADVDAAVAAARRAFDNG-PWPRLSPAERAAVLRRLADALEARADELARLWTAENGMPISW 94

Query: 63  S-IFDLGCASDTFRYFAG 79
           S        +   RY+A 
Sbjct: 95  SRRAQGPGPAALLRYYAA 112

The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD. Length = 471

>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase

 Score = 53.9 bits (129), Expect = 7e-10
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
             VD AV +A AAF     W       R + + KLA++I++N    A LE+ + GKP   
Sbjct: 38  EQVDAAVRAADAAFAE---WGQTTPKARAECLLKLADVIEENAQVFAELESRNCGKPLHS 94

Query: 63  SIFD-LGCASDTFRYFAG 79
              D +    D FR+FAG
Sbjct: 95  VFNDEIPAIVDVFRFFAG 112

Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family. Length = 472

>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 3  ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
          A+ + A+ +A+ AF     W + D   R +++ +LA+  + N + LA L  L+NGK   +
Sbjct: 19 AEAEAAIAAARRAFDETD-WAH-DPRLRARVLLELADAFEANAERLARLLALENGKILGE 76

Query: 63 SIFDLGCASDTFRYFAG 79
          + F++  A    RY+AG
Sbjct: 77 ARFEISGAISELRYYAG 93

Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural. Length = 455

>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins

 Score = 51.3 bits (123), Expect = 5e-09
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           AD ++A+ +A+A  +     R L    R  ++ + A+L+ K  +  A +   + GKP +D
Sbjct: 21  ADAEEALATARAGAEN---RRALPPHERMAILERAADLLKKRAEEFAKIIACEGGKPIKD 77

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPS 91
           +  ++  A DT R  A   ++I G  IP 
Sbjct: 78  ARVEVDRAIDTLRLAAEEAERIRGEEIPL 106

ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences. Length = 453

>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
             D+++A+ +A  AF+     R L A  R  ++      +++  + LA    L+ GKP +
Sbjct: 20  PDDIEEAIAAAVKAFRP---MRALPAHRRAAILLHCVARLEERFEELAETIVLEAGKPIK 76

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
           D+  ++  A DTFR  A    +I G  +P
Sbjct: 77  DARGEVARAIDTFRIAAEEATRIYGEVLP 105

Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD. Length = 452

>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde dehydrogenase

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP-YE 61
           A+VD AV +A+AA K    W  +  + R  L+Y +A+ I++  D   + E  D GKP   
Sbjct: 36  AEVDAAVAAARAALKGP--WGKMTVAERADLLYAVADEIERRFDDFLAAEVADTGKPRSL 93

Query: 62  DSIFDLGCASDTFRYFA 78
            S  D+   +  FR FA
Sbjct: 94  ASHLDIPRGAANFRVFA 110

Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation [Energy metabolism, Other]. Length = 481

>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I; Provisional

 Score = 48.4 bits (115), Expect = 6e-08
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           + +   A+++A  A      WR L A  R  ++ +   L+ ++ D LA L TL+ GKP  
Sbjct: 47  ADETRAAIDAANRAL---PAWRALTAKERANILRRWFNLMMEHQDDLARLMTLEQGKPLA 103

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           ++  ++  A+    +FA    +I G TIP    D
Sbjct: 104 EAKGEISYAASFIEWFAEEGKRIYGDTIPGHQAD 137

Length = 482

>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
             DV+KA+ +AK   K     ++L A  R +++ + A+L+++  +  A    L+ GKP +
Sbjct: 20  EEDVEKAIAAAKEGAKEM---KSLPAYERAEILERAAQLLEERREEFARTIALEAGKPIK 76

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
           D+  ++  A +T R  A    ++ G TIP
Sbjct: 77  DARKEVDRAIETLRLSAEEAKRLAGETIP 105

Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD. Length = 453

>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 4  DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASL---ETLDNGKPY 60
          DVD+A  +A AA K    W       R  ++ K AE++++  D +A     E+   G   
Sbjct: 1  DVDRAYAAAAAAQKA---WAATPPQERAAILRKAAEILEERRDEIADWLIRES---GSTR 54

Query: 61 EDSIFDLGCASDTFRYFAGWCDKIEGSTIPSES 93
            + F++G A    R  AG   + EG  +PS+ 
Sbjct: 55 PKAAFEVGAAIAILREAAGLPRRPEGEILPSDV 87

ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences. Length = 431

>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           +  V++A+ +A+AAF     W       R  ++ + A+L++ N   L +L   + GK  +
Sbjct: 584 AEQVEQALAAARAAFPA---WSRTPVEERAAILERAADLLEANRAELIALCVREAGKTLQ 640

Query: 62  DSIFDLGCASDTFRYFA 78
           D+I ++  A D  RY+A
Sbjct: 641 DAIAEVREAVDFCRYYA 657

Length = 1038

>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 3/90 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            D +  +++A+ AFK    WR++ A  RG+++ ++ + + K  + L  L +L+ GK   +
Sbjct: 34  EDYESTIKAAQEAFK---EWRDVPAPKRGEIVRQIGDALRKKKEALGKLVSLEMGKILPE 90

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
            + ++    D   +  G   ++ G TIPSE
Sbjct: 91  GLGEVQEMIDICDFAVGLSRQLYGLTIPSE 120

Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer. Length = 474

>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A+ + A+E+A AAFK    W++     R +L+ K A+L+ +    L +  T + GK + +
Sbjct: 55  AEAEAALEAAWAAFKT---WKDWPQEDRARLLLKAADLLRRRRRELIATLTYEVGKNWVE 111

Query: 63  SIFDLGCASDTFRYFAGWCDKIEG 86
           +I D+  A D  RY+A    ++  
Sbjct: 112 AIDDVAEAIDFIRYYARAALRLRY 135

ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH. Length = 500

>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 3  ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
          A+V  AV  A+AA +    W  L   GR + + +    +  + D LA L   + GKP  D
Sbjct: 18 AEVAAAVARARAAQR---AWAALGVEGRAQRLLRWKRALADHADELAELLHAETGKPRAD 74

Query: 63 SIFDLGCASDTFRYFA 78
          +  ++  A +   + A
Sbjct: 75 AGLEVLLALEAIDWAA 90

4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid. Length = 453

>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 1   MSAD-VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP 59
           +SA  + +A E+A  A +    W  +    R   ++K A+L+ +N + +A+L   + GK 
Sbjct: 35  LSALEILEAAETAYDAGR--GWWPTMPLEERIDCLHKFADLLKENKEEVANLLMWEIGKT 92

Query: 60  YEDSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGNK 100
            +D++ ++    D  R       +++G ++P +       K
Sbjct: 93  LKDALKEVDRTIDYIRDTIEELKRLDGDSLPGDWFPGTKGK 133

NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants. Length = 473

>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           + DVD A+  A AAF   + W       R +++ K A+L++ N   L +L   + GK   
Sbjct: 68  AEDVDAALAIAAAAF---AGWSATPVEERAEILEKAADLLEANRGELIALAAAEAGKTLA 124

Query: 62  DSIFDLGCASDTFRYFA 78
           D+  ++  A D  RY+A
Sbjct: 125 DADAEVREAIDFCRYYA 141

The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Length = 518

>gnl|CDD|132284 TIGR03240, arg_catab_astD, succinylglutamic semialdehyde dehydrogenase

 Score = 45.1 bits (107), Expect = 8e-07
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 3  ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60
          A V+ AV +A+AAF     W  L    R  ++ + A L+++  + LA +   + GKP 
Sbjct: 35 AQVEAAVAAARAAFPA---WARLSLEERIAVVQRFAALLEERKEALARVIARETGKPL 89

Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism [Energy metabolism, Amino acids and amines]. Length = 484

>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
              +KA+++A  AF+    W+      R +++ + A +I +     ++    + GKP+ +
Sbjct: 73  ELAEKAMQAALEAFET---WKKWSPEDRARILLRAAAIIRRRKHEFSAWLVKEAGKPWAE 129

Query: 63  SIFDLGCASDTFRYFA 78
           +  D   A D   Y+A
Sbjct: 130 ADADTAEAIDFLEYYA 145

Length = 514

>gnl|CDD|143414 cd07095, ALDH_SGSD_AstD, N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 4  DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP 59
           VD AV +A+AAF     W  L    R  ++ + AEL+  N + LA L + + GKP
Sbjct: 1  QVDAAVAAARAAFPG---WAALSLEERAAILRRFAELLKANKEELARLISRETGKP 53

N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate. Length = 431

>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase [acylating]

 Score = 42.4 bits (99), Expect = 6e-06
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 8   AVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDL 67
           AV +AK AF    +WRN   + R +++ K  ELI KN+D LA   T + GK  +DS  D+
Sbjct: 156 AVSAAKQAF---PLWRNTPITTRQRVMLKFQELIRKNMDKLAMNITTEQGKTLKDSHGDI 212

Query: 68  GCASDTFRYFAGWCDKIEGSTIPSES 93
               +   +  G      G  +P+ S
Sbjct: 213 FRGLEVVEHACGMATLQMGEYLPNVS 238

Length = 604

>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase

 Score = 42.2 bits (99), Expect = 8e-06
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +VD AV SA+  F     W     + R  ++ +   L+ ++ D +A L T ++GK + D
Sbjct: 38  DEVDAAVASARETF---LTWGQTSLAQRTSVLLRYQALLKEHRDEIAELITAEHGKTHSD 94

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           ++ D+    +   +  G    ++G T    +  
Sbjct: 95  ALGDVARGLEVVEHACGVNSLLKGETSTQVATR 127

Involved in valine catabolism, methylmalonate-semialdehyde dehydrogenase catalyzes the irreversible NAD+- and CoA-dependent oxidative decarboxylation of methylmalonate semialdehyde to propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase has been characterized in both prokaryotes and eukaryotes, functioning as a mammalian tetramer and a bacterial homodimer. Although similar in monomeric molecular mass and enzymatic activity, the N-terminal sequence in P.aeruginosa does not correspond with the N-terminal sequence predicted for rat liver. Sequence homology to a variety of prokaryotic and eukaryotic aldehyde dehydrogenases places MMSDH in the aldehyde dehydrogenase (NAD+) superfamily (pfam00171), making MMSDH's CoA requirement unique among known ALDHs. Methylmalonate semialdehyde dehydrogenase is closely related to betaine aldehyde dehydrogenase, 2-hydroxymuconic semialdehyde dehydrogenase, and class 1 and 2 aldehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus [Energy metabolism, Amino acids and amines]. Length = 477

>gnl|CDD|181873 PRK09457, astD, succinylglutamic semialdehyde dehydrogenase; Reviewed

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 3  ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP 59
          A VD AV +A+AAF     W  L    R  ++ + A L+++N + LA +   + GKP
Sbjct: 37 AQVDAAVRAARAAFPA---WARLSFEERQAIVERFAALLEENKEELAEVIARETGKP 90

Length = 487

>gnl|CDD|226683 COG4230, COG4230, Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
            ADV++A+E+A AA     +W     + R  ++ + A+L++  +  L  L   + GK   
Sbjct: 149 EADVEQALEAAVAAA---PIWSATPPAERAAILERAADLMEAQMPQLMGLLVREAGKTLS 205

Query: 62  DSIFDLGCASDTFRYFAG 79
           ++I ++  A D  RY+AG
Sbjct: 206 NAIAEVREAVDFLRYYAG 223

Length = 769

>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and 22A1-like

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 3  ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           DVD+A+ +A+AA +    W     + R K++  L + I +N + +  +   D GK   D
Sbjct: 18 EDVDEAIAAARAAQRE---WAKTSFAERRKVLRSLLKYILENQEEICRVACRDTGKTMVD 74

Query: 63 SIF 65
          +  
Sbjct: 75 ASL 77

Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation. Length = 465

>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD+AV +A+ AF     W       R  L+ ++AE  +   D LA   TL+ G P   
Sbjct: 36  ADVDRAVAAARRAFPA---WSATSVEERAALLERIAEAYEARADELAQAITLEMGAPITL 92

Query: 63  SI-FDLGCASDTFRYFA 78
           +    +G      R  A
Sbjct: 93  ARAAQVGLGIGHLRAAA 109

The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD. Length = 466

>gnl|CDD|233325 TIGR01238, D1pyr5carbox3, delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain)

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A V  A++SA+ AF     W    A  R   + +LA+L++ ++  L +L   + GK   +
Sbjct: 74  AHVQAAIDSAQQAF---PTWNATPAKERAAKLDRLADLLELHMPELMALCVREAGKTIHN 130

Query: 63  SIFDLGCASDTFRYFAG 79
           +I ++  A D  RY+A 
Sbjct: 131 AIAEVREAVDFCRYYAK 147

This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase [Energy metabolism, Amino acids and amines]. Length = 500

>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 22/88 (25%), Positives = 45/88 (51%)

Query: 10  ESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGC 69
           E  +A  +   +W  + A  RG+++ ++ + +   +DYL  L +L+ GK   + I ++  
Sbjct: 60  EGLRACEEAAKIWMQVPAPKRGEIVRQIGDALRAKLDYLGRLVSLEMGKILAEGIGEVQE 119

Query: 70  ASDTFRYFAGWCDKIEGSTIPSESKDNI 97
             D   +  G   ++ GS IPSE  +++
Sbjct: 120 IIDMCDFAVGLSRQLNGSIIPSERPNHM 147

Length = 508

>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 1   MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60
             A +DKA+++A A F   + W  L A  R  ++ +LA+L+++  D LA L   + GKP 
Sbjct: 19  DWAAIDKALDTAHALFLDRNNW--LPAHERIAILERLADLMEERADELALLIAREGGKPL 76

Query: 61  EDSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
            D+  ++  A D     A    ++ G  IP
Sbjct: 77  VDAKVEVTRAIDGVELAADELGQLGGREIP 106

Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD. Length = 455

>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
             + A+++A  AF+    W+  D   R  +++K A ++ +     ++L   + GKP+ ++
Sbjct: 70  HAEHALQAAAKAFEA---WKKTDPEERAAILFKAAAIVRRRRHEFSALLVKEVGKPWNEA 126

Query: 64  IFDLGCASDTFRYFA 78
             ++  A D   Y+A
Sbjct: 127 DAEVAEAIDFMEYYA 141

This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs [Energy metabolism, Amino acids and amines]. Length = 511

>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 3  ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP--Y 60
          ADVD A+ +A+ AF  G  W   DA  R + + +L E ++   + L +L   + G P   
Sbjct: 19 ADVDAAIAAARRAFDTGD-WS-TDAEERARCLRQLHEALEARKEELRALLVAEVGAPVMT 76

Query: 61 EDSIFDLGCASDTFRYFAG 79
            ++   G      RYFA 
Sbjct: 77 ARAMQVDGPI-GHLRYFAD 94

The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD. Length = 459

>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 3   ADVDKAVESAKAAFKRGSVWR--NLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60
             V    E A       +      L    R  ++ K A L++   +  A L TL++G   
Sbjct: 13  GTVPAGTEEALREALALAASYRSTLTRYQRSAILNKAAALLEARREEFARLITLESGLCL 72

Query: 61  EDSIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
           +D+ +++G A+D  R+ A    + +G +   +
Sbjct: 73  KDTRYEVGRAADVLRFAAAEALRDDGESFSCD 104

Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD. Length = 451

>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 5/95 (5%)

Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVD+A  +A AA K    W       R +++ K A+++++  D +      ++G     +
Sbjct: 33  DVDEAYRAAAAAQKE---WAATLPQERAEILEKAAQILEERRDEIVEWLIRESGSTRIKA 89

Query: 64  IFDLGCASDTFRYFAGWCDKIEGSTIPS--ESKDN 96
             + G A    R  A +  ++EG  +PS    K+N
Sbjct: 90  NIEWGAAMAITREAATFPLRMEGRILPSDVPGKEN 124

NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD. Length = 465

>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            DV++A+ +A+AAF     W    A+ R  ++ + A+L++ ++  L +L   + GK   +
Sbjct: 590 EDVERALAAAQAAFPE---WSATPAAERAAILERAADLMEAHMPELFALAVREAGKTLAN 646

Query: 63  SIFDLGCASDTFRYFA 78
           +I ++  A D  RY+A
Sbjct: 647 AIAEVREAVDFLRYYA 662

Length = 1208

>gnl|CDD|143403 cd07084, ALDH_KGSADH-like, ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 14 AAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDT 73
          AA       R L    R   + ++ + +      +A+   L  GK       ++      
Sbjct: 7  AADISTKAARRLALPKRADFLARIIQRLAAKSYDIAAGAVLVTGKG-WMFAENICGDQVQ 65

Query: 74 FRYFAGWCDKIEGSTIPSESKDNIG 98
           R  A     I    IP E  +++G
Sbjct: 66 LRARA---FVIYSYRIPHEPGNHLG 87

ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway. Length = 442

>gnl|CDD|132294 TIGR03250, PhnAcAld_DH, putative phosphonoacetaldehyde dehydrogenase

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 9   VESAKAAFKRGSVWR-NLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDL 67
           V+  + AF   + +R  L    R  ++ + A L+    + ++ L TL++G   +DS++++
Sbjct: 38  VDDVRRAFAIAAAYRPTLTRYERSAILDRAAALLAARKEEISDLITLESGLSKKDSLYEV 97

Query: 68  GCASDTFRYFAGWCDKIEGST 88
           G  +D   + A    + +G  
Sbjct: 98  GRVADVLTFAAAEALRDDGQI 118

This family of genes are members of the pfam00171 NAD-dependent aldehyde dehydrogenase family. These genes are observed in Ralstonia eutropha JMP134, Sinorhizobium meliloti 1021, Burkholderia mallei ATCC 23344, Burkholderia thailandensis E264, Burkholderia cenocepacia AU 1054, Burkholderia pseudomallei K96243 and 1710b, Burkholderia xenovorans LB400, Burkholderia sp. 383 and Polaromonas sp. JS666 in close proximity to the PhnW gene (TIGR02326) encoding 2-aminoethyl phosphonate aminotransferase (which generates phosphonoacetaldehyde) and PhnA (TIGR02335) encoding phosphonoacetate hydrolase (not to be confused with the alkylphosphonate utilization operon protein PhnA modeled by TIGR00686). Additionally, transporters believed to be specific for 2-aminoethyl phosphonate are often present. PhnW is, in other organisms, coupled with PhnX (TIGR01422) for the degradation of phosphonoacetaldehyde (GenProp0238), but PhnX is apparently absent in each of the organisms containing this aldehyde reductase. PhnA, characterized in a strain of Pseudomonas fluorescens that has not het been genome sequenced, is only rarely found outside of the PhnW and aldehyde dehydrogenase context. For instance in Rhodopseudomonas and Bordetella bronchiseptica, where it is adjacent to transporters presumably specific for the import of phosphonoacetate. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme. Length = 472

>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 36 KLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEGSTIPSE-SK 94
          K+A  I +    +++L   + GK  + +  ++   +D   Y A W  + EG  I S+   
Sbjct: 3  KIAAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGEIIQSDRPG 62

Query: 95 DNI 97
          +NI
Sbjct: 63 ENI 65

Length = 409

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
KOG2451|consensus	503		99.76
PLN02419	604	methylmalonate-semialdehyde dehydrogenase [acylati	99.68
PLN02315	508	aldehyde dehydrogenase family 7 member	99.67
PLN02174	484	aldehyde dehydrogenase family 3 member H1	99.67
COG1012	472	PutA NAD-dependent aldehyde dehydrogenases [Energy	99.66
PRK11903	521	aldehyde dehydrogenase; Provisional	99.66
PRK11241	482	gabD succinate-semialdehyde dehydrogenase I; Provi	99.65
PRK09406	457	gabD1 succinic semialdehyde dehydrogenase; Reviewe	99.64
PRK13968	462	putative succinate semialdehyde dehydrogenase; Pro	99.63
PLN02467	503	betaine aldehyde dehydrogenase	99.63
cd07097	473	ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent	99.63
cd07135	436	ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde	99.63
TIGR01237	511	D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehy	99.62
PLN02278	498	succinic semialdehyde dehydrogenase	99.62
cd07120	455	ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde deh	99.61
cd07118	454	ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydr	99.61
cd07145	456	ALDH_LactADH_F420-Bios Methanocaldococcus jannasch	99.61
PTZ00381	493	aldehyde dehydrogenase family protein; Provisional	99.61
cd07128	513	ALDH_MaoC-N N-terminal domain of the monoamine oxi	99.61
PLN02203	484	aldehyde dehydrogenase	99.6
cd07124	512	ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxyl	99.6
TIGR01238	500	D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehy	99.6
cd07130	474	ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic se	99.6
cd07117	475	ALDH_StaphAldA1 Uncharacterized Staphylococcus aur	99.59
cd07150	451	ALDH_VaniDH_like Pseudomonas putida vanillin dehyd	99.59
cd07101	454	ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succi	99.59
PRK09847	494	gamma-glutamyl-gamma-aminobutyraldehyde dehydrogen	99.59
TIGR03374	472	ABALDH 1-pyrroline dehydrogenase. Members of this	99.59
PRK03137	514	1-pyrroline-5-carboxylate dehydrogenase; Provision	99.59
cd07151	465	ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyd	99.59
PF00171	462	Aldedh: Aldehyde dehydrogenase family; InterPro: I	99.59
cd07095	431	ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde	99.58
cd07083	500	ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-	99.58
PRK11904	1038	bifunctional proline dehydrogenase/pyrroline-5-car	99.58
PLN02466	538	aldehyde dehydrogenase family 2 member	99.58
cd07086	478	ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadip	99.58
cd07140	486	ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydroge	99.58
TIGR01236	533	D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehy	99.57
PLN02766	501	coniferyl-aldehyde dehydrogenase	99.57
KOG2450|consensus	501		99.57
cd07123	522	ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate	99.57
cd07152	443	ALDH_BenzADH NAD-dependent benzaldehyde dehydrogen	99.57
cd07559	480	ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dep	99.57
TIGR01722	477	MMSDH methylmalonic acid semialdehyde dehydrogenas	99.57
cd07116	479	ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependen	99.57
TIGR01780	448	SSADH succinate-semialdehyde dehydrogenase. SSADH	99.57
cd07107	456	ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde	99.57
cd07089	459	ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric	99.56
COG4230	769	Delta 1-pyrroline-5-carboxylate dehydrogenase [Ene	99.56
cd07085	478	ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrog	99.56
cd07142	476	ALDH_F2BC Arabidosis aldehyde dehydrogenase family	99.56
PRK09457	487	astD succinylglutamic semialdehyde dehydrogenase;	99.56
cd07090	457	ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobuty	99.56
PRK09407	524	gabD2 succinic semialdehyde dehydrogenase; Reviewe	99.56
cd07094	453	ALDH_F21_LactADH-like ALDH subfamily: NAD+-depende	99.56
PLN00412	496	NADP-dependent glyceraldehyde-3-phosphate dehydrog	99.56
cd07088	468	ALDH_LactADH-AldA Escherichia coli lactaldehyde de	99.56
PRK13252	488	betaine aldehyde dehydrogenase; Provisional	99.56
cd07148	455	ALDH_RL0313 Uncharacterized ALDH ( RL0313) with si	99.56
cd07147	452	ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1	99.56
cd07125	518	ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate d	99.56
cd07113	477	ALDH_PADH_NahF Escherichia coli NAD+-dependent phe	99.56
PRK11809	1318	putA trifunctional transcriptional regulator/proli	99.56
TIGR01804	467	BADH glycine betaine aldehyde dehydrogenase. Betai	99.56
cd07102	452	ALDH_EDX86601 Uncharacterized aldehyde dehydrogena	99.56
cd07110	456	ALDH_F10_BADH Arabidopsis betaine aldehyde dehydro	99.56
TIGR02278	663	PaaN-DH phenylacetic acid degradation protein paaN	99.56
TIGR03216	481	OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehy	99.55
cd07099	453	ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-di	99.55
cd07108	457	ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent a	99.55
cd07131	478	ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuen	99.55
cd07100	429	ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succi	99.54
cd07105	432	ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-l	99.54
cd07119	482	ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent be	99.54
TIGR02299	488	HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyd	99.54
cd07136	449	ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydr	99.54
TIGR03240	484	arg_catab_astD succinylglutamic semialdehyde dehyd	99.54
cd07082	473	ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylat	99.54
cd07109	454	ALDH_AAS00426 Uncharacterized Saccharopolyspora sp	99.53
cd07138	466	ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric ac	99.53
cd07139	471	ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehy	99.53
cd07143	481	ALDH_AldA_AN0554 Aspergillus nidulans aldehyde deh	99.53
PRK13473	475	gamma-aminobutyraldehyde dehydrogenase; Provisiona	99.53
cd07112	462	ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent	99.53
cd07126	489	ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate de	99.53
cd07103	451	ALDH_F5_SSADH_GabD Mitochondrial succinate-semiald	99.52
cd07149	453	ALDH_y4uC Uncharacterized ALDH (y4uC) with similar	99.52
cd07098	465	ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and	99.52
cd07106	446	ALDH_AldA-AAD23400 Streptomyces aureofaciens putat	99.51
cd07115	453	ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxy	99.51
cd07132	443	ALDH_F3AB Aldehyde dehydrogenase family 3 members	99.51
cd07104	431	ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependen	99.51
PRK11563	675	bifunctional aldehyde dehydrogenase/enoyl-CoA hydr	99.51
PRK11905	1208	bifunctional proline dehydrogenase/pyrroline-5-car	99.5
cd07114	457	ALDH_DhaS Uncharacterized Candidatus pelagibacter	99.5
cd07137	432	ALDH_F3FHI Plant aldehyde dehydrogenase family 3 m	99.49
cd07087	426	ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl	99.49
cd07092	450	ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent g	99.48
cd07111	480	ALDH_F16 Aldehyde dehydrogenase family 16A1-like.	99.48
cd07144	484	ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyd	99.47
cd07093	455	ALDH_F8_HMSADH Human aldehyde dehydrogenase family	99.47
cd07141	481	ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydro	99.47
cd07091	476	ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families	99.46
cd07129	454	ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydr	99.45
TIGR03250	472	PhnAcAld_DH putative phosphonoacetaldehyde dehydro	99.43
cd07084	442	ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent	99.43
cd07134	433	ALDH_AlkH-like Pseudomonas putida Aldehyde dehydro	99.43
cd07122	436	ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydr	99.42
cd07146	451	ALDH_PhpJ Streptomyces putative phosphonoformaldeh	99.41
cd07133	434	ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-l	99.39
cd07081	439	ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldeh	99.39
cd07127	549	ALDH_PAD-PaaZ Phenylacetic acid degradation protei	99.39
TIGR02288	551	PaaN_2 phenylacetic acid degradation protein paaN.	99.35
cd07121	429	ALDH_EutE Ethanolamine utilization protein EutE-li	99.31
KOG2452|consensus	881		99.3
PLN02418	718	delta-1-pyrroline-5-carboxylate synthase	99.3
PRK13805	862	bifunctional acetaldehyde-CoA/alcohol dehydrogenas	99.3
PRK00197	417	proA gamma-glutamyl phosphate reductase; Provision	99.28
cd07078	432	ALDH NAD(P)+ dependent aldehyde dehydrogenase fami	99.26
KOG2453|consensus	507		99.23
KOG2455|consensus	561		99.23
cd06534	367	ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase s	99.22
TIGR02518	488	EutH_ACDH acetaldehyde dehydrogenase (acetylating)	99.22
PRK15398	465	aldehyde dehydrogenase EutE; Provisional	99.21
TIGR00407	398	proA gamma-glutamyl phosphate reductase. The prosi	99.19
cd07079	406	ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate redu	99.07
cd07077	397	ALDH-like NAD(P)+-dependent aldehyde dehydrogenase	99.05
KOG2454|consensus	583		99.03
KOG2456|consensus	477		99.02
TIGR01092	715	P5CS delta l-pyrroline-5-carboxylate synthetase. T	98.78
PRK10090	409	aldehyde dehydrogenase A; Provisional	98.58
KOG4165|consensus	433		95.32
COG0014	417	ProA Gamma-glutamyl phosphate reductase [Amino aci	90.01
PF06945	51	DUF1289: Protein of unknown function (DUF1289); In	86.14
PF13376	63	OmdA: Bacteriocin-protection, YdeI or OmpD-Associa	84.54
cd01390	66	HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and II	83.54
PF09011	73	HMG_box_2: HMG-box domain; InterPro: IPR015101 Thi	80.49

>KOG2451|consensus

Probab=99.76  E-value=4.3e-18  Score=117.74  Aligned_cols=90  Identities=36%  Similarity=0.535  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhch
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWC   81 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~   81 (100)
                      .+|.+.||.+|.+||.   .|++++..+|..+|++|.++|.+|.++|+.+++.|.|||+.++.+||..+..+++||++.+
T Consensus        60 V~e~~kAI~aA~EaF~---s~~~~takeRs~lLrkwy~Li~en~ddLa~iiTlE~GKpL~eA~gEv~y~a~f~eWyAeEA  136 (503)
T KOG2451|consen   60 VEEAEKAIDAAYEAFK---SYRNLTAKERSALLRKWYELIMENKDDLATIITLENGKPLGEAKGEVAYSAAFFEWYAEEA  136 (503)
T ss_pred             HHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHhchHHHHHHHhhhcCCchhhccceeehhHHHHHHHHHHh
Confidence            5789999999999999   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccCCCCC
Q psy13780         82 DKIEGSTIPSESK   94 (100)
Q Consensus        82 ~~~~~~~~~~~~~   94 (100)
                      .+..++..++..+
T Consensus       137 ~RvyGdii~s~~~  149 (503)
T KOG2451|consen  137 RRVYGDIIPSLNP  149 (503)
T ss_pred             hhhhccccCCCCC
Confidence            9999987765443

>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]

Probab=99.68  E-value=5.7e-16  Score=113.75  Aligned_cols=84  Identities=32%  Similarity=0.413  Sum_probs=79.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.||++|++||+   .|+.+|..+|.++|.+++++|++|+++|+.+++.|+|||+.++..||..+++.++||+..
T Consensus       149 ~~~dv~~Av~aA~~A~~---~W~~~~~~eR~~iL~k~a~~L~~~~~ela~~~~~E~GKp~~ea~~EV~~~i~~~~~~a~~  225 (604)
T PLN02419        149 TNEEFKAAVSAAKQAFP---LWRNTPITTRQRVMLKFQELIRKNMDKLAMNITTEQGKTLKDSHGDIFRGLEVVEHACGM  225 (604)
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus       226 a~~~~g~  232 (604)
T PLN02419        226 ATLQMGE  232 (604)
T ss_pred             HHHhhCC
Confidence            8777654

>PLN02315 aldehyde dehydrogenase family 7 member

Probab=99.67  E-value=8e-16  Score=111.38  Aligned_cols=84  Identities=23%  Similarity=0.465  Sum_probs=78.8

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.||++|++||+   .|+++|..+|.++|.+++++|++|+++|+++++.|+|||+.++..|+..+++.++|++..
T Consensus        54 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~GK~~~~a~~ev~~~i~~~~~~~~~  130 (508)
T PLN02315         54 SLEDYEEGLRACEEAAK---IWMQVPAPKRGEIVRQIGDALRAKLDYLGRLVSLEMGKILAEGIGEVQEIIDMCDFAVGL  130 (508)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999988


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus       131 ~~~l~~~  137 (508)
T PLN02315        131 SRQLNGS  137 (508)
T ss_pred             HHHhcCc
Confidence            8776554

>PLN02174 aldehyde dehydrogenase family 3 member H1

Probab=99.67  E-value=1.2e-15  Score=109.84  Aligned_cols=83  Identities=16%  Similarity=0.087  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhc
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGW   80 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~   80 (100)
                      ..|++.++++|++||+   .|+.+|+.+|.++|.+++++|++|+++|+.+++.|+|||..++.. |+..+++.++|++++
T Consensus         9 ~~~v~~av~~a~~af~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~l~~e~GKp~~~a~~~Ev~~~~~~~~~~~~~   85 (484)
T PLN02174          9 AADASILVTELRRSFD---DGVTRGYEWRVTQLKKLMIICDNHEPEIVAALRDDLGKPELESSVYEVSLLRNSIKLALKQ   85 (484)
T ss_pred             HHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999   999999999999999999999999999999999999999999976 999999999999999


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.++
T Consensus        86 ~~~~~~~   92 (484)
T PLN02174         86 LKNWMAP   92 (484)
T ss_pred             HHHHhcc
Confidence            9888763

>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]

Probab=99.66  E-value=1.6e-15  Score=108.93  Aligned_cols=85  Identities=36%  Similarity=0.640  Sum_probs=80.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|+.+|.   .|+++|+.+|.++|.+++++|++|.++|+.+++.|+|||+.++..++..+++.++||+..
T Consensus        34 ~~~dv~~Av~aA~~a~~---~W~~~~~~eR~~iL~~~a~~l~~~~~ela~~~~~e~Gk~i~ea~~ei~~~~~~~~~~a~~  110 (472)
T COG1012          34 TAEDVDAAVAAARAAFE---AWSRLSAEERAAILRRIADLLEARAEELAALITLETGKPISEARGEIARAADFIRYYAEE  110 (472)
T ss_pred             CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.+..
T Consensus       111 ~~~~~~~~  118 (472)
T COG1012         111 ARRLEGET  118 (472)
T ss_pred             HHHhcCCc
Confidence            98877654

>PRK11903 aldehyde dehydrogenase; Provisional

Probab=99.66  E-value=1.5e-15  Score=110.20  Aligned_cols=82  Identities=21%  Similarity=0.270  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHHHh-cCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          2 SADVDKAVESAKAAF-KRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~-~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      .+||++||++|++|| +   .|+++|+.+|.++|.+++++|++++++|+.+++.|+|||+.++..||..+++.++||+..
T Consensus        39 ~~dv~~Av~aA~~A~~~---~W~~~~~~eR~~~L~~~a~~l~~~~~ela~~~~~e~Gkp~~~a~~ev~~~i~~l~~~a~~  115 (521)
T PRK11903         39 GLDLAAAFAFAREQGGA---ALRALTYAQRAALLAAIVKVLQANRDAYYDIATANSGTTRNDSAVDIDGGIFTLGYYAKL  115 (521)
T ss_pred             hHHHHHHHHHHHHhhhh---hhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999995 8   999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhcC
Q psy13780         81 CDKIEG   86 (100)
Q Consensus        81 ~~~~~~   86 (100)
                      +..+.+
T Consensus       116 a~~~~~  121 (521)
T PRK11903        116 GAALGD  121 (521)
T ss_pred             HHHcCC
Confidence            766543

>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional

Probab=99.65  E-value=2e-15  Score=108.78  Aligned_cols=84  Identities=27%  Similarity=0.456  Sum_probs=78.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.|+++|++||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||+.++..|+..+++.++|++..
T Consensus        46 ~~~~v~~av~~A~~a~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~  122 (482)
T PRK11241         46 GADETRAAIDAANRALP---AWRALTAKERANILRRWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEE  122 (482)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999988999999999999988


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.+..+.
T Consensus       123 ~~~~~g~  129 (482)
T PRK11241        123 GKRIYGD  129 (482)
T ss_pred             HHHhcCc
Confidence            8766543

>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed

Probab=99.64  E-value=2.3e-15  Score=107.78  Aligned_cols=84  Identities=25%  Similarity=0.399  Sum_probs=79.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+|++|++||+   .|+.+|..+|.++|.+++++|++++++|+++++.|+|||+.++..||..+++.++||+..
T Consensus        21 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~   97 (457)
T PRK09406         21 TDDEVDAAIARAHARFR---DYRTTTFAQRARWANAAADLLEAEADQVAALMTLEMGKTLASAKAEALKCAKGFRYYAEH   97 (457)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.+.
T Consensus        98 ~~~~~~~  104 (457)
T PRK09406         98 AEALLAD  104 (457)
T ss_pred             HHHHhCC
Confidence            8877643

>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional

Probab=99.63  E-value=3.1e-15  Score=107.30  Aligned_cols=83  Identities=17%  Similarity=0.332  Sum_probs=78.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|+++|++.|+++|+   .|+.+++.+|.++|.+++++|++|+++|+.+++.|+|||..++..|+..++..++||+..
T Consensus        27 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~  103 (462)
T PRK13968         27 GADDIENALQLAAAGFR---DWRETNIDYRAQKLRDIGKALRARSEEMAQMITREMGKPINQARAEVAKSANLCDWYAEH  103 (462)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhhcC
Q psy13780         81 CDKIEG   86 (100)
Q Consensus        81 ~~~~~~   86 (100)
                      +.++.+
T Consensus       104 ~~~~~~  109 (462)
T PRK13968        104 GPAMLK  109 (462)
T ss_pred             HHHhhC
Confidence            877654

>PLN02467 betaine aldehyde dehydrogenase

Probab=99.63  E-value=3.9e-15  Score=107.76  Aligned_cols=84  Identities=35%  Similarity=0.591  Sum_probs=79.1

Q ss_pred             ChHHHHHHHHHHHHHh-----cCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAF-----KRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFR   75 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~-----~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~   75 (100)
                      +.+|++.||++|++||     +   .|+++|..+|.++|.+++++|++++++|+.+++.|+|||..++..|+..++..++
T Consensus        43 ~~~dv~~av~~A~~a~~~~~~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~  119 (503)
T PLN02467         43 TAEDVDAAVEAARKAFKRNKGK---DWARTTGAVRAKYLRAIAAKITERKSELAKLETLDCGKPLDEAAWDMDDVAGCFE  119 (503)
T ss_pred             CHHHHHHHHHHHHHHhhhcccc---hhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999999     7   8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhchhhhcCc
Q psy13780         76 YFAGWCDKIEGS   87 (100)
Q Consensus        76 ~~a~~~~~~~~~   87 (100)
                      ||+..+.++.+.
T Consensus       120 ~~a~~~~~~~~~  131 (503)
T PLN02467        120 YYADLAEALDAK  131 (503)
T ss_pred             HHHHHHHHhcCc
Confidence            999988877554

>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like

Probab=99.63  E-value=5.4e-15  Score=106.23  Aligned_cols=84  Identities=29%  Similarity=0.486  Sum_probs=79.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|+++||+.|++||+   .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++..|+..++..++||+..
T Consensus        35 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~  111 (473)
T cd07097          35 SAEDADAAIAAAAAAFP---AWRRTSPEARADILDKAGDELEARKEELARLLTREEGKTLPEARGEVTRAGQIFRYYAGE  111 (473)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      ..++.++
T Consensus       112 ~~~~~g~  118 (473)
T cd07097         112 ALRLSGE  118 (473)
T ss_pred             HHHhcCc
Confidence            8777654

Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.

>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins

Probab=99.63  E-value=5.6e-15  Score=105.35  Aligned_cols=83  Identities=13%  Similarity=0.114  Sum_probs=78.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+||+.|+++|+.||+   .|+.+|..+|.++|.++++.|.+|+++|+++++.|+|||..++.. |+..+++.++||+.
T Consensus         3 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~e~~~~ev~~~~~~~~~~a~   79 (436)
T cd07135           3 PLDEIDSIHSRLRATFR---SGKTKDLEYRLWQLKQLYWAVKDNEEAIVEALKKDLGRPPFETLLTEVSGVKNDILHMLK   79 (436)
T ss_pred             CHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999975 99999999999999


Q ss_pred             chhhhcC
Q psy13780         80 WCDKIEG   86 (100)
Q Consensus        80 ~~~~~~~   86 (100)
                      .+.++.+
T Consensus        80 ~~~~~~~   86 (436)
T cd07135          80 NLKKWAK   86 (436)
T ss_pred             HHHHhhC
Confidence            8877643

Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.

>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative

Probab=99.62  E-value=6.1e-15  Score=106.87  Aligned_cols=84  Identities=23%  Similarity=0.391  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.||+.|+.||+   .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..++..++|++..
T Consensus        67 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~  143 (511)
T TIGR01237        67 SVEQAEHALQIAKKAFE---AWKKTPVRERAGILRKAAAIMERRRHELNALICLEVGKIIPEADAEVAEAIDFCEYYARE  143 (511)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.+.
T Consensus       144 ~~~~~~~  150 (511)
T TIGR01237       144 MERLAGQ  150 (511)
T ss_pred             HHHhcCc
Confidence            8877653

This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.

>PLN02278 succinic semialdehyde dehydrogenase

Probab=99.62  E-value=6.5e-15  Score=106.47  Aligned_cols=84  Identities=33%  Similarity=0.537  Sum_probs=79.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.||++|+.||+   .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++..||..++..+++++..
T Consensus        60 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~Ev~~~i~~~~~~~~~  136 (498)
T PLN02278         60 GRAETNDAIASAHDAFP---SWSKLTASERSKILRRWYDLIIANKEDLAQLMTLEQGKPLKEAIGEVAYGASFLEYFAEE  136 (498)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999   999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus       137 ~~~~~g~  143 (498)
T PLN02278        137 AKRVYGD  143 (498)
T ss_pred             HHHhcCc
Confidence            8776554

>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like

Probab=99.61  E-value=1.1e-14  Score=104.38  Aligned_cols=85  Identities=29%  Similarity=0.532  Sum_probs=77.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.||+.|++||+.+ .|+. ++.+|.++|.+++++|++|+++|+.+++.|+|||..++..||..+++.++||+..
T Consensus        17 ~~~~v~~av~~A~~a~~~~-~w~~-~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~Ev~~~i~~l~~~~~~   94 (455)
T cd07120          17 GVAEAEAAIAAARRAFDET-DWAH-DPRLRARVLLELADAFEANAERLARLLALENGKILGEARFEISGAISELRYYAGL   94 (455)
T ss_pred             CHHHHHHHHHHHHHhcCCC-ccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999810 2998 8999999999999999999999999999999999999989999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.+..+.
T Consensus        95 ~~~~~g~  101 (455)
T cd07120          95 ARTEAGR  101 (455)
T ss_pred             HHHhcCc
Confidence            8776554

Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.

>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like

Probab=99.61  E-value=1.4e-14  Score=103.74  Aligned_cols=85  Identities=34%  Similarity=0.594  Sum_probs=77.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.||+.|++||+.+ .|+++|.++|.++|.+++++|.+|+++|+.+++.|+|||+.++..|+..+++.++|++..
T Consensus        17 ~~~~v~~av~~A~~a~~~~-~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~i~~~~~~~~~   95 (454)
T cd07118          17 TVEDVDAAVAAARKAFDKG-PWPRMSGAERAAVLLKVADLIRARRERLALIETLESGKPISQARGEIEGAADLWRYAASL   95 (454)
T ss_pred             CHHHHHHHHHHHHHHcCCC-ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999711 399999999999999999999999999999999999999999988999999999999987


Q ss_pred             hhhhcC
Q psy13780         81 CDKIEG   86 (100)
Q Consensus        81 ~~~~~~   86 (100)
                      ...+.+
T Consensus        96 ~~~~~~  101 (454)
T cd07118          96 ARTLHG  101 (454)
T ss_pred             HHHhcC
Confidence            665544

Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.

>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like

Probab=99.61  E-value=9.2e-15  Score=104.56  Aligned_cols=84  Identities=32%  Similarity=0.407  Sum_probs=78.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|++||+   .|+.+|.++|.++|.+++++|.+|+++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus        19 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~   95 (456)
T cd07145          19 SREEVREAIEVAEKAKD---VMSNLPAYKRYKILMKVAELIERRKEELAKLLTIEVGKPIKQSRVEVERTIRLFKLAAEE   95 (456)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999   999999999999999999999999999999999999999999989999999999999988


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus        96 ~~~~~~~  102 (456)
T cd07145          96 AKVLRGE  102 (456)
T ss_pred             HHHhcCc
Confidence            7655443

NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.

>PTZ00381 aldehyde dehydrogenase family protein; Provisional

Probab=99.61  E-value=1.5e-14  Score=104.53  Aligned_cols=85  Identities=11%  Similarity=0.069  Sum_probs=79.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.+++.++++|.   .|+.+|..+|.++|.+++++|++|+++|+++++.|+|||..++.. |+..++..++++++
T Consensus         5 ~~~~i~~av~~a~~a~~---~~~~~~~~~R~~~L~~l~~~l~~~~~~i~~a~~~d~Gk~~~ea~~~Ev~~~~~~i~~~~~   81 (493)
T PTZ00381          5 NPEIIPPIVKKLKESFL---TGKTRPLEFRKQQLRNLLRMLEENKQEFSEAVHKDLGRHPFETKMTEVLLTVAEIEHLLK   81 (493)
T ss_pred             CHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999976 99999999999999


Q ss_pred             chhhhcCcc
Q psy13780         80 WCDKIEGST   88 (100)
Q Consensus        80 ~~~~~~~~~   88 (100)
                      ++.+|+...
T Consensus        82 ~~~~~~~~~   90 (493)
T PTZ00381         82 HLDEYLKPE   90 (493)
T ss_pred             HHHHHhCCc
Confidence            998886543

>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase

Probab=99.61  E-value=8.1e-15  Score=106.29  Aligned_cols=79  Identities=22%  Similarity=0.209  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHH-hcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhch
Q psy13780          3 ADVDKAVESAKAA-FKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWC   81 (100)
Q Consensus         3 ~~v~~ai~~a~~a-~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~   81 (100)
                      +|++.||++|+.| |+   .|+.+|+.+|+++|.+++++|++|+++|+.+ +.|+|||+.++..||..+++.++||+..+
T Consensus        36 ~dv~~Av~~A~~A~~~---~W~~~~~~~Ra~~L~~~a~~l~~~~~~la~l-~~e~Gkp~~ea~~Ev~~~~~~~~~~a~~a  111 (513)
T cd07128          36 LDFAAAVAYAREKGGP---ALRALTFHERAAMLKALAKYLMERKEDLYAL-SAATGATRRDSWIDIDGGIGTLFAYASLG  111 (513)
T ss_pred             HHHHHHHHHHHHhhhc---hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999997 78   9999999999999999999999999999996 89999999999899999999999999998


Q ss_pred             hhhc
Q psy13780         82 DKIE   85 (100)
Q Consensus        82 ~~~~   85 (100)
                      .++.
T Consensus       112 ~~~~  115 (513)
T cd07128         112 RREL  115 (513)
T ss_pred             Hhhc
Confidence            7765

The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.

>PLN02203 aldehyde dehydrogenase

Probab=99.60  E-value=9.6e-15  Score=105.28  Aligned_cols=83  Identities=13%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhc
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGW   80 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~   80 (100)
                      .+||+.|+++|+.||+   .|+.+|+.+|.++|++++++|++|+++|+++++.|+|||..++.. ||..++..++|+++.
T Consensus         5 ~~~v~~av~~a~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~~~~   81 (484)
T PLN02203          5 GETLEGSVAELRETYE---SGRTRSLEWRKSQLKGLLRLLKDNEEAIFKALHQDLGKHRVEAYRDEVGVLTKSANLALSN   81 (484)
T ss_pred             HHHHHHHHHHHHHHHH---hcCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999   999999999999999999999999999999999999999999964 999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.+.
T Consensus        82 ~~~~~~~   88 (484)
T PLN02203         82 LKKWMAP   88 (484)
T ss_pred             HHHHhcc
Confidence            8877543

>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA

Probab=99.60  E-value=1.3e-14  Score=105.22  Aligned_cols=84  Identities=27%  Similarity=0.436  Sum_probs=79.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|++||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus        67 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~ev~~~i~~~~~~~~~  143 (512)
T cd07124          67 TKEEAEAAVQAARAAFP---TWRRTPPEERARLLLRAAALLRRRRFELAAWMVLEVGKNWAEADADVAEAIDFLEYYARE  143 (512)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999   999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.+.
T Consensus       144 ~~~~~~~  150 (512)
T cd07124         144 MLRLRGF  150 (512)
T ss_pred             HHHhcCc
Confidence            8887544

Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.

>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain)

Probab=99.60  E-value=1.1e-14  Score=105.41  Aligned_cols=83  Identities=29%  Similarity=0.433  Sum_probs=78.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.|+++|++||+   .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus        72 ~~~dv~~av~~A~~a~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~i~~l~~~a~~  148 (500)
T TIGR01238        72 NLAHVQAAIDSAQQAFP---TWNATPAKERAAKLDRLADLLELHMPELMALCVREAGKTIHNAIAEVREAVDFCRYYAKQ  148 (500)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhhcC
Q psy13780         81 CDKIEG   86 (100)
Q Consensus        81 ~~~~~~   86 (100)
                      ...+.+
T Consensus       149 ~~~~~~  154 (500)
T TIGR01238       149 VRDVLG  154 (500)
T ss_pred             HHHhcC
Confidence            876654

This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.

>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B

Probab=99.60  E-value=1.5e-14  Score=103.98  Aligned_cols=84  Identities=23%  Similarity=0.456  Sum_probs=77.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|++||+   .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus        32 ~~~~v~~av~~a~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~  108 (474)
T cd07130          32 TPEDYESTIKAAQEAFK---EWRDVPAPKRGEIVRQIGDALRKKKEALGKLVSLEMGKILPEGLGEVQEMIDICDFAVGL  108 (474)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999987


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      ...+.+.
T Consensus       109 ~~~~~~~  115 (474)
T cd07130         109 SRQLYGL  115 (474)
T ss_pred             HHHhcCc
Confidence            6655443

Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.

>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like

Probab=99.59  E-value=1.4e-14  Score=104.18  Aligned_cols=83  Identities=47%  Similarity=0.775  Sum_probs=77.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||+.++.. |+..++..+++|+.
T Consensus        36 ~~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~i~~l~~~a~  112 (475)
T cd07117          36 TDADVDRAVKAAQEAFK---TWRKTTVAERANILNKIADIIDENKELLAMVETLDNGKPIRETRAVDIPLAADHFRYFAG  112 (475)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999986 99999999999998


Q ss_pred             chhhhcC
Q psy13780         80 WCDKIEG   86 (100)
Q Consensus        80 ~~~~~~~   86 (100)
                      .+....+
T Consensus       113 ~~~~~~~  119 (475)
T cd07117         113 VIRAEEG  119 (475)
T ss_pred             HHHHhcC
Confidence            8765544

Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.

>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like

Probab=99.59  E-value=1.9e-14  Score=102.73  Aligned_cols=84  Identities=26%  Similarity=0.508  Sum_probs=78.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.+|+.|++||+   .|+.+|..+|.++|.+++++|.+++++|+++++.|+|||+.++..|+..++..+++++..
T Consensus        19 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~   95 (451)
T cd07150          19 SRQDAERAIAAAYDAFP---AWAATTPSERERILLKAAEIMERRADDLIDLLIDEGGSTYGKAWFETTFTPELLRAAAGE   95 (451)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus        96 ~~~~~~~  102 (451)
T cd07150          96 CRRVRGE  102 (451)
T ss_pred             HHHhcCc
Confidence            8776544

Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.

>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like

Probab=99.59  E-value=1.9e-14  Score=102.96  Aligned_cols=84  Identities=23%  Similarity=0.342  Sum_probs=79.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|++||+   .|+.+|.++|.++|.+++++|.+++++|+++++.|+|||..++..|+..++..++|++..
T Consensus        16 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~   92 (454)
T cd07101          16 TPADVEAAFARARAAQR---AWAARPFAERAAVFLRFHDLVLERRDELLDLIQLETGKARRHAFEEVLDVAIVARYYARR   92 (454)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.++
T Consensus        93 ~~~~~~~   99 (454)
T cd07101          93 AERLLKP   99 (454)
T ss_pred             HHHHhCC
Confidence            8877654

Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).

>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional

Probab=99.59  E-value=2.3e-14  Score=103.50  Aligned_cols=87  Identities=38%  Similarity=0.619  Sum_probs=78.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.|+++|++||..+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++.. ||..+++.++|++.
T Consensus        55 ~~~dv~~av~aA~~a~~~~-~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~~~~l~~~a~  133 (494)
T PRK09847         55 KSVDIDRAVSAARGVFERG-DWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDIPGAARAIRWYAE  133 (494)
T ss_pred             CHHHHHHHHHHHHHhcCCC-ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999610 499999999999999999999999999999999999999998765 99999999999999


Q ss_pred             chhhhcCcc
Q psy13780         80 WCDKIEGST   88 (100)
Q Consensus        80 ~~~~~~~~~   88 (100)
                      .+.++.+..
T Consensus       134 ~~~~~~g~~  142 (494)
T PRK09847        134 AIDKVYGEV  142 (494)
T ss_pred             HHHHhcCcc
Confidence            988776543

>TIGR03374 ABALDH 1-pyrroline dehydrogenase

Probab=99.59  E-value=2.2e-14  Score=103.21  Aligned_cols=83  Identities=34%  Similarity=0.585  Sum_probs=76.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.|++.|++||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++.. |+..+++.++|++.
T Consensus        36 ~~~~v~~av~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~a~  112 (472)
T TIGR03374        36 SAEQVDAAVRAADAAFA---EWGQTTPKARAECLLKLADVIEENAQVFAELESRNCGKPLHSVFNDEIPAIVDVFRFFAG  112 (472)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999   999999999999999999999999999999999999999999875 99999999999998


Q ss_pred             chhhhcC
Q psy13780         80 WCDKIEG   86 (100)
Q Consensus        80 ~~~~~~~   86 (100)
                      .+..+.+
T Consensus       113 ~~~~~~~  119 (472)
T TIGR03374       113 AARCLSG  119 (472)
T ss_pred             HHHHhcC
Confidence            8765544

Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.

>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional

Probab=99.59  E-value=2.3e-14  Score=104.00  Aligned_cols=82  Identities=22%  Similarity=0.406  Sum_probs=78.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|+.||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||+.++..|+..+++.+++|+..
T Consensus        71 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~  147 (514)
T PRK03137         71 TKELAEKAMQAALEAFE---TWKKWSPEDRARILLRAAAIIRRRKHEFSAWLVKEAGKPWAEADADTAEAIDFLEYYARQ  147 (514)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhc
Q psy13780         81 CDKIE   85 (100)
Q Consensus        81 ~~~~~   85 (100)
                      +.++.
T Consensus       148 ~~~~~  152 (514)
T PRK03137        148 MLKLA  152 (514)
T ss_pred             HHHhc
Confidence            87764

>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like

Probab=99.59  E-value=2.5e-14  Score=102.67  Aligned_cols=84  Identities=24%  Similarity=0.304  Sum_probs=78.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|++||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus        30 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~Ev~~~~~~~~~~~~~  106 (465)
T cd07151          30 SKEDVDEAYRAAAAAQK---EWAATLPQERAEILEKAAQILEERRDEIVEWLIRESGSTRIKANIEWGAAMAITREAATF  106 (465)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            35789999999999999   999999999999999999999999999999999999999999988999999999999988


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      ...+.+.
T Consensus       107 ~~~~~~~  113 (465)
T cd07151         107 PLRMEGR  113 (465)
T ss_pred             HHHhcCc
Confidence            7665443

NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.

>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1

Probab=99.59  E-value=1.4e-14  Score=103.70  Aligned_cols=85  Identities=38%  Similarity=0.638  Sum_probs=80.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.++++|++||+   .|+.+|..+|.++|.+++++|.+|.++|+.+++.|+|||+.++..|+..+++.++|++..
T Consensus        27 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~  103 (462)
T PF00171_consen   27 TAEDVDRAVEAARAAFK---EWSKLPAAERARILERFADLLEERRDELAELIALETGKPIAEARGEVDRAIDFLRYYADA  103 (462)
T ss_dssp             SHHHHHHHHHHHHHHHH---HHTTSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhc
Confidence            46799999999999999   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.+..
T Consensus       104 ~~~~~~~~  111 (462)
T PF00171_consen  104 ARKLAGEV  111 (462)
T ss_dssp             HHHHTEEE
T ss_pred             ccceehhh
Confidence            98866543

2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....

>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like

Probab=99.58  E-value=1.6e-14  Score=102.80  Aligned_cols=81  Identities=27%  Similarity=0.408  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhh
Q psy13780          4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDK   83 (100)
Q Consensus         4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~   83 (100)
                      |++.+|+.|+.||+   .|+.+|..+|.++|.+++++|.+|.++|+.+++.|+|||..++..||..++..++|++..+..
T Consensus         1 ~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~ev~~~~~~~~~~~~~~~~   77 (431)
T cd07095           1 QVDAAVAAARAAFP---GWAALSLEERAAILRRFAELLKANKEELARLISRETGKPLWEAQTEVAAMAGKIDISIKAYHE   77 (431)
T ss_pred             CHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999   999999999999999999999999999999999999999999988999999999999988877


Q ss_pred             hcCc
Q psy13780         84 IEGS   87 (100)
Q Consensus        84 ~~~~   87 (100)
                      +.+.
T Consensus        78 ~~~~   81 (431)
T cd07095          78 RTGE   81 (431)
T ss_pred             hcCC
Confidence            7654

N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.

>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like

Probab=99.58  E-value=2e-14  Score=104.01  Aligned_cols=84  Identities=30%  Similarity=0.443  Sum_probs=79.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.+++.|++||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||+.++..|+..++..+++|+..
T Consensus        53 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~  129 (500)
T cd07083          53 DKAEAEAALEAAWAAFK---TWKDWPQEDRARLLLKAADLLRRRRRELIATLTYEVGKNWVEAIDDVAEAIDFIRYYARA  129 (500)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999   999999999999999999999999999999999999999999888999999999999999


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.+.
T Consensus       130 ~~~~~~~  136 (500)
T cd07083         130 ALRLRYP  136 (500)
T ss_pred             HHHhcCc
Confidence            8877654

ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.

>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed

Probab=99.58  E-value=2.2e-14  Score=110.59  Aligned_cols=83  Identities=28%  Similarity=0.470  Sum_probs=79.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.++|+.||+.|++||+   .|+.+|+.+|.++|.+++++|++++++|+.+++.|+|||+.++..||..++++|+||+..
T Consensus       583 ~~~~v~~Ai~aA~~A~~---~W~~~~~~~Ra~iL~kaAdll~~~~~eL~~l~~~E~GK~~~~a~~EV~eaid~lr~ya~~  659 (1038)
T PRK11904        583 DAEQVEQALAAARAAFP---AWSRTPVEERAAILERAADLLEANRAELIALCVREAGKTLQDAIAEVREAVDFCRYYAAQ  659 (1038)
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hhhhcC
Q psy13780         81 CDKIEG   86 (100)
Q Consensus        81 ~~~~~~   86 (100)
                      +.++.+
T Consensus       660 a~~~~~  665 (1038)
T PRK11904        660 ARRLFG  665 (1038)
T ss_pred             HHHhhC
Confidence            887754

>PLN02466 aldehyde dehydrogenase family 2 member

Probab=99.58  E-value=3.6e-14  Score=103.46  Aligned_cols=86  Identities=45%  Similarity=0.818  Sum_probs=77.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|+++||++|++||+.+ .|+.++..+|.++|.+++++|++|+++|+++++.|+|||+.++.. ||..+++.++||+.
T Consensus        93 ~~~dv~~Av~aA~~a~~~~-~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~GK~~~~a~~~Ev~~~~~~l~~~a~  171 (538)
T PLN02466         93 DAEDVNRAVAAARKAFDEG-PWPKMTAYERSRILLRFADLLEKHNDELAALETWDNGKPYEQSAKAELPMFARLFRYYAG  171 (538)
T ss_pred             CHHHHHHHHHHHHHHcCcC-ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999711 499999999999999999999999999999999999999999865 99999999999998


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      ...+..+.
T Consensus       172 ~~~~~~g~  179 (538)
T PLN02466        172 WADKIHGL  179 (538)
T ss_pred             HHHHhcCc
Confidence            87766544

>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins

Probab=99.58  E-value=3.3e-14  Score=102.36  Aligned_cols=84  Identities=29%  Similarity=0.474  Sum_probs=78.7

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.++++|++||+   .|+.+|.++|.++|.+++++|.+++++|+++++.|+|||+.++..|+..++..++|++..
T Consensus        33 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~  109 (478)
T cd07086          33 SPEDVEAAVAAAREAFK---EWRKVPAPRRGEIVRQIGEALRKKKEALGRLVSLEMGKILPEGLGEVQEMIDICDYAVGL  109 (478)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus       110 ~~~~~g~  116 (478)
T cd07086         110 SRMLYGL  116 (478)
T ss_pred             HHHhcCc
Confidence            8776554

ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).

>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L

Probab=99.58  E-value=3.2e-14  Score=102.66  Aligned_cols=86  Identities=47%  Similarity=0.928  Sum_probs=77.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.|++.|++||..+ .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||..++.. |+..+++.++||+.
T Consensus        41 ~~~~v~~av~~A~~A~~~~-~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~  119 (486)
T cd07140          41 TVEDVDRAVAAAKEAFENG-EWGKMNARDRGRLMYRLADLMEEHQEELATIESLDSGAVYTLALKTHVGMSIQTFRYFAG  119 (486)
T ss_pred             CHHHHHHHHHHHHHhcCCC-chhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999711 499999999999999999999999999999999999999999974 99999999999998


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+.++.+.
T Consensus       120 ~~~~~~g~  127 (486)
T cd07140         120 WCDKIQGK  127 (486)
T ss_pred             HHHHhcCc
Confidence            87766544

10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.

>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1

Probab=99.57  E-value=3.1e-14  Score=103.68  Aligned_cols=84  Identities=24%  Similarity=0.300  Sum_probs=77.7

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHcCCChHHHHhh-HHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELID-KNVDYLASLETLDNGKPYEDSIFD-LGCASDTFRYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~-~~~~~l~~~~~~e~Gk~~~~a~~e-v~~~~~~~~~~a   78 (100)
                      +.+||+.||++|+++|+   .|+.+|+.+|.++|.+++++|+ +++++|+.+++.|+|||+.++..+ +...++.++|++
T Consensus        67 ~~~~v~~av~~A~~a~~---~W~~~~~~~R~~~L~k~a~~l~~~~~~~la~~~~~e~GK~~~~a~~e~v~~~i~~~~~~a  143 (533)
T TIGR01236        67 TEEDAAKAVEAALDAKK---DWSALPFYDRAAIFLKAADLLSGPYREEILAATMLGQSKNVYQAEIDAVAELIDFFRFNV  143 (533)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHcCCcHHHHhHhHHHHHHHHHHHHH
Confidence            46799999999999999   9999999999999999999999 599999999999999999999885 999999999999


Q ss_pred             hchhhhcCc
Q psy13780         79 GWCDKIEGS   87 (100)
Q Consensus        79 ~~~~~~~~~   87 (100)
                      ..+.++.+.
T Consensus       144 ~~a~~~~~~  152 (533)
T TIGR01236       144 KYARELYEQ  152 (533)
T ss_pred             HHHHHhcCc
Confidence            988777554

This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.

>PLN02766 coniferyl-aldehyde dehydrogenase

Probab=99.57  E-value=4e-14  Score=102.49  Aligned_cols=86  Identities=38%  Similarity=0.688  Sum_probs=78.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.||+.|++||+.+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++.. |+..++..++|++.
T Consensus        56 ~~~~v~~av~~A~~A~~~~-~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~  134 (501)
T PLN02766         56 DKEDVDLAVKAAREAFDHG-PWPRMSGFERGRIMMKFADLIEEHIEELAALDTIDAGKLFALGKAVDIPAAAGLLRYYAG  134 (501)
T ss_pred             CHHHHHHHHHHHHHhcCCC-ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999711 499999999999999999999999999999999999999999875 99999999999999


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+.++.+.
T Consensus       135 ~~~~~~g~  142 (501)
T PLN02766        135 AADKIHGE  142 (501)
T ss_pred             HHHHhcCc
Confidence            88776654

>KOG2450|consensus

Probab=99.57  E-value=1.2e-14  Score=103.39  Aligned_cols=89  Identities=56%  Similarity=0.942  Sum_probs=81.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-hhHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI-FDLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~~~~~a~   79 (100)
                      +.+||+.|+++|++||+. +.|++++..+|..+|+++++++++++++|+.+.+.+.|||+.++. .+|..+++.++||+.
T Consensus        56 ~~~dVd~aV~aAr~Af~~-~~W~~~~~~~R~~~L~~~Adlie~~~~~lA~~E~~d~GKp~~~a~~~Dl~~~~~~~ry~ag  134 (501)
T KOG2450|consen   56 TEEDVDEAVKAARSAFKL-VDWAKRDAAERGRLLRKLADLIEQDADVLAALEVLDNGKPYPEALVSDLPPAIDCFRYYAG  134 (501)
T ss_pred             cHHHHHHHHHHHHHhcCc-CccccCCHHHHHHHHHHHHHHHHhhhHHHhhhcccccCCcchhhhhcCchhhhhHHHhhcc
Confidence            468999999999999983 259999999999999999999999999999999999999999999 599999999999999


Q ss_pred             chhhhcCcccC
Q psy13780         80 WCDKIEGSTIP   90 (100)
Q Consensus        80 ~~~~~~~~~~~   90 (100)
                      .+.+..+...+
T Consensus       135 ~ad~~~~~~~~  145 (501)
T KOG2450|consen  135 WADKIHGSTIP  145 (501)
T ss_pred             chhhcccccCC
Confidence            99888555444

>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17

Probab=99.57  E-value=3.8e-14  Score=102.99  Aligned_cols=84  Identities=23%  Similarity=0.261  Sum_probs=77.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDK-NVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~-~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a   78 (100)
                      +.+||+.||++|++||.   .|+.+|..+|.++|.+++++|.+ ++++|+.+++.|+|||+.++.. ++...++.++|++
T Consensus        67 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~~ela~~~~~e~Gk~~~~a~~~~v~~~~~~~~~~a  143 (522)
T cd07123          67 DAALVEKAIEAALEARK---EWARMPFEDRAAIFLKAADLLSGKYRYELNAATMLGQGKNVWQAEIDAACELIDFLRFNV  143 (522)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHhcCCCHHHHhHHHHHHHHHHHHHHH
Confidence            46799999999999999   99999999999999999999996 8999999999999999999876 8889999999999


Q ss_pred             hchhhhcCc
Q psy13780         79 GWCDKIEGS   87 (100)
Q Consensus        79 ~~~~~~~~~   87 (100)
                      ..+.++.+.
T Consensus       144 ~~~~~~~~~  152 (522)
T cd07123         144 KYAEELYAQ  152 (522)
T ss_pred             HHHHHhcCc
Confidence            988776544

Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.

>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like

Probab=99.57  E-value=3.5e-14  Score=101.30  Aligned_cols=83  Identities=25%  Similarity=0.386  Sum_probs=77.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.++++.++++|+.||+   .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||..++..|+..++..+++++..
T Consensus        11 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~i~~l~~~~~~   87 (443)
T cd07152          11 DAADVDRAAARAAAAQR---AWAATPPRERAAVLRRAADLLEEHADEIADWIVRESGSIRPKAGFEVGAAIGELHEAAGL   87 (443)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999987


Q ss_pred             hhhhcC
Q psy13780         81 CDKIEG   86 (100)
Q Consensus        81 ~~~~~~   86 (100)
                      .....+
T Consensus        88 ~~~~~~   93 (443)
T cd07152          88 PTQPQG   93 (443)
T ss_pred             HHHhCC
Confidence            655433

NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.

>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like

Probab=99.57  E-value=4e-14  Score=102.00  Aligned_cols=84  Identities=44%  Similarity=0.718  Sum_probs=77.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.||++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||+.++.. |+..+++.+++++.
T Consensus        36 ~~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~  112 (480)
T cd07559          36 TAEDVDLAVDAAHEAFK---TWGKTSVAERANILNKIADRIEENLELLAVAETLDNGKPIRETLAADIPLAIDHFRYFAG  112 (480)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999976 99999999999999


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+....+.
T Consensus       113 ~~~~~~~~  120 (480)
T cd07559         113 VIRAQEGS  120 (480)
T ss_pred             HHHHhcCc
Confidence            87665443

Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.

>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase

Probab=99.57  E-value=4.6e-14  Score=101.55  Aligned_cols=84  Identities=24%  Similarity=0.381  Sum_probs=78.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|+.||+   .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||+.++..|+..+++.++|++..
T Consensus        36 ~~~~v~~ai~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~i~~~~~~~~~  112 (477)
T TIGR01722        36 SVDEVDAAVASARETFL---TWGQTSLAQRTSVLLRYQALLKEHRDEIAELITAEHGKTHSDALGDVARGLEVVEHACGV  112 (477)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999987


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      ...+.++
T Consensus       113 ~~~~~g~  119 (477)
T TIGR01722       113 NSLLKGE  119 (477)
T ss_pred             HHHhcCc
Confidence            7666554

In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.

>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like

Probab=99.57  E-value=3.8e-14  Score=102.05  Aligned_cols=84  Identities=37%  Similarity=0.637  Sum_probs=77.8

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.||++|++||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++.. |+..+++.+++|+.
T Consensus        36 ~~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~  112 (479)
T cd07116          36 TAEDIELALDAAHAAKE---AWGKTSVAERANILNKIADRMEANLEMLAVAETWDNGKPVRETLAADIPLAIDHFRYFAG  112 (479)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999875 99999999999999


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+....+.
T Consensus       113 ~~~~~~~~  120 (479)
T cd07116         113 CIRAQEGS  120 (479)
T ss_pred             hHHHcCCe
Confidence            87665443

Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.

>TIGR01780 SSADH succinate-semialdehyde dehydrogenase

Probab=99.57  E-value=4.7e-14  Score=100.83  Aligned_cols=84  Identities=32%  Similarity=0.484  Sum_probs=78.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.++++.++++|++||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..++..++|++..
T Consensus        17 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~   93 (448)
T TIGR01780        17 GVEEAEAAIRAAYEAFK---TWKNTTAKERSSLLRKWYNLMMENKDDLARLITLENGKPLKEAKGEILYAASFLEWFAEE   93 (448)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999   999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      ..++.+.
T Consensus        94 ~~~~~~~  100 (448)
T TIGR01780        94 AKRVYGD  100 (448)
T ss_pred             HHHhcCc
Confidence            7766554

SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).

>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like

Probab=99.57  E-value=4e-14  Score=101.34  Aligned_cols=84  Identities=33%  Similarity=0.574  Sum_probs=78.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|+.||+   .|+.+|..+|.++|.+++++|.++.++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus        17 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~   93 (456)
T cd07107          17 SAADVDRAVAAARAAFP---EWRATTPLERARMLRELATRLREHAEELALIDALDCGNPVSAMLGDVMVAAALLDYFAGL   93 (456)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999988999999999999987


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      ...+.+.
T Consensus        94 ~~~~~~~  100 (456)
T cd07107          94 VTELKGE  100 (456)
T ss_pred             HHHhCCc
Confidence            7655544

Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.

>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins

Probab=99.56  E-value=4.4e-14  Score=101.26  Aligned_cols=85  Identities=26%  Similarity=0.345  Sum_probs=78.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccc-cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWR-NLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~-~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a   78 (100)
                      +.+|+++++++|++||.   .|+ .+|..+|.++|.+++++|++++++|+.+++.|+|||..++.. |+..+++.++|++
T Consensus        17 ~~~~v~~av~~A~~a~~---~w~w~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~i~~~~~~~   93 (459)
T cd07089          17 GAADVDAAIAAARRAFD---TGDWSTDAEERARCLRQLHEALEARKEELRALLVAEVGAPVMTARAMQVDGPIGHLRYFA   93 (459)
T ss_pred             CHHHHHHHHHHHHHHHH---hhhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999 999999999999999999999999999999999999987755 9999999999999


Q ss_pred             hchhhhcCcc
Q psy13780         79 GWCDKIEGST   88 (100)
Q Consensus        79 ~~~~~~~~~~   88 (100)
                      +.+.++.++.
T Consensus        94 ~~~~~~~~~~  103 (459)
T cd07089          94 DLADSFPWEF  103 (459)
T ss_pred             HHHHHhcCce
Confidence            9988876543

The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.

>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]

Probab=99.56  E-value=4.1e-14  Score=102.00  Aligned_cols=83  Identities=29%  Similarity=0.473  Sum_probs=78.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|+++|++.|..+++   .|+.+|+.+|+.+|.+++++|+.+..+|..++++|.||+...+..||..++++|+||+..
T Consensus       148 ~~~~v~~A~~~A~~a~p---~W~atp~~eRAaiL~raAdlme~~m~~L~~L~~REAGKtl~naIAEVREAVDFlrYYA~~  224 (769)
T COG4230         148 TEADVEQALEAAVAAAP---IWSATPPAERAAILERAADLMEAQMPQLMGLLVREAGKTLSNAIAEVREAVDFLRYYAGQ  224 (769)
T ss_pred             CHHHHHHHHHHHHhhCc---ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcC
Q psy13780         81 CDKIEG   86 (100)
Q Consensus        81 ~~~~~~   86 (100)
                      ++.-.+
T Consensus       225 ar~~~g  230 (769)
T COG4230         225 ARDTFG  230 (769)
T ss_pred             HhcccC
Confidence            875443

>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2

Probab=99.56  E-value=5.2e-14  Score=101.28  Aligned_cols=84  Identities=30%  Similarity=0.469  Sum_probs=77.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.++++|++||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..++..++|++..
T Consensus        36 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~  112 (478)
T cd07085          36 TAEEVDAAVAAAKAAFP---AWSATPVLKRQQVMFKFRQLLEENLDELARLITLEHGKTLADARGDVLRGLEVVEFACSI  112 (478)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999   999999999999999999999999999999999999999999988999999999999887


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      .....++
T Consensus       113 ~~~~~g~  119 (478)
T cd07085         113 PHLLKGE  119 (478)
T ss_pred             HHHhCCe
Confidence            6555443

Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.

>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like

Probab=99.56  E-value=6.4e-14  Score=100.81  Aligned_cols=86  Identities=44%  Similarity=0.864  Sum_probs=77.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.+|++|++||+.+ .|+++|..+|.++|.+++++|.+|+++|+++++.|+|||..++.. |+..+++.+++++.
T Consensus        39 ~~~~v~~av~~A~~a~~~~-~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~  117 (476)
T cd07142          39 DAEDVDRAVKAARKAFDEG-PWPRMTGYERSRILLRFADLLEKHADELAALETWDNGKPYEQARYAEVPLAARLFRYYAG  117 (476)
T ss_pred             CHHHHHHHHHHHHHhcCCC-chhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999710 399999999999999999999999999999999999999999875 99999999999998


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+....+.
T Consensus       118 ~~~~~~g~  125 (476)
T cd07142         118 WADKIHGM  125 (476)
T ss_pred             HHHHhcCc
Confidence            87665544

Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.

>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed

Probab=99.56  E-value=4e-14  Score=102.11  Aligned_cols=84  Identities=25%  Similarity=0.394  Sum_probs=78.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.++++|++||+   .|+++|..+|.++|.+++++|.+++++|+++++.|+|||..++..|+..+++.+++++..
T Consensus        35 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~  111 (487)
T PRK09457         35 TAAQVDAAVRAARAAFP---AWARLSFEERQAIVERFAALLEENKEELAEVIARETGKPLWEAATEVTAMINKIAISIQA  111 (487)
T ss_pred             CHHHHHHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999888


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.+.
T Consensus       112 ~~~~~~~  118 (487)
T PRK09457        112 YHERTGE  118 (487)
T ss_pred             HHHhcCc
Confidence            7666544

>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1

Probab=99.56  E-value=4.5e-14  Score=101.08  Aligned_cols=84  Identities=40%  Similarity=0.659  Sum_probs=78.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|+.||+   .|+.+|..+|.++|.++++.|.++.++|+++++.|+|||..++..|+..+++.++|++..
T Consensus        17 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~   93 (457)
T cd07090          17 GAEDVDLAVKSAKAAQK---EWSATSGMERGRILRKAADLLRERNDEIARLETIDNGKPIEEARVDIDSSADCLEYYAGL   93 (457)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999988


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus        94 ~~~~~~~  100 (457)
T cd07090          94 APTLSGE  100 (457)
T ss_pred             HHHhCCe
Confidence            7765443

NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.

>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed

Probab=99.56  E-value=4.6e-14  Score=102.61  Aligned_cols=84  Identities=25%  Similarity=0.373  Sum_probs=78.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+|+.|+.||+   .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..++..++|++..
T Consensus        52 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~  128 (524)
T PRK09407         52 TAADVEAAFARARAAQR---AWAATPVRERAAVLLRFHDLVLENREELLDLVQLETGKARRHAFEEVLDVALTARYYARR  128 (524)
T ss_pred             CHHHHHHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.++
T Consensus       129 ~~~~~~~  135 (524)
T PRK09407        129 APKLLAP  135 (524)
T ss_pred             HHHhhCC
Confidence            8777654

>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins

Probab=99.56  E-value=4.9e-14  Score=100.76  Aligned_cols=85  Identities=27%  Similarity=0.401  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|+.||+   .|+.+|..+|.++|.+++++|.++.++|+++++.|+|||..++..|+..++..+++++..
T Consensus        19 ~~~~v~~av~~a~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~   95 (453)
T cd07094          19 DRADAEEALATARAGAE---NRRALPPHERMAILERAADLLKKRAEEFAKIIACEGGKPIKDARVEVDRAIDTLRLAAEE   95 (453)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            36799999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.+..
T Consensus        96 ~~~~~~~~  103 (453)
T cd07094          96 AERIRGEE  103 (453)
T ss_pred             HHHhcCcc
Confidence            88776543

ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.

>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.56  E-value=4.2e-14  Score=102.25  Aligned_cols=82  Identities=28%  Similarity=0.327  Sum_probs=77.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|++||+   .|+.+|..+|.++|.++++.|++++++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus        51 ~~~dv~~av~~A~~A~~---~W~~~~~~~R~~iL~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~Ev~~~~~~l~~~a~~  127 (496)
T PLN00412         51 TQEEVNKAMESAKAAQK---AWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLISYTAEE  127 (496)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999988


Q ss_pred             hhhhc
Q psy13780         81 CDKIE   85 (100)
Q Consensus        81 ~~~~~   85 (100)
                      +.++.
T Consensus       128 ~~~~~  132 (496)
T PLN00412        128 GVRIL  132 (496)
T ss_pred             HHHHh
Confidence            76654

>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like

Probab=99.56  E-value=5.5e-14  Score=100.83  Aligned_cols=84  Identities=37%  Similarity=0.581  Sum_probs=78.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|+.||+   .|+.+|..+|.++|.++++.|.++.++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus        33 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~  109 (468)
T cd07088          33 TAEDADRAVDAAEAAQK---AWERLPAIERAAYLRKLADLIRENADELAKLIVEEQGKTLSLARVEVEFTADYIDYMAEW  109 (468)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999   999999999999999999999999999999999999999999988999999999999988


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.+..+.
T Consensus       110 a~~~~~~  116 (468)
T cd07088         110 ARRIEGE  116 (468)
T ss_pred             HHHhCCc
Confidence            7665544

Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.

>PRK13252 betaine aldehyde dehydrogenase; Provisional

Probab=99.56  E-value=4.6e-14  Score=101.80  Aligned_cols=84  Identities=36%  Similarity=0.647  Sum_probs=78.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.++++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++.. |+..+++.+++++.
T Consensus        42 ~~~dv~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~~~  118 (488)
T PRK13252         42 TPADVEAAVASAKQGQK---IWAAMTAMERSRILRRAVDILRERNDELAALETLDTGKPIQETSVVDIVTGADVLEYYAG  118 (488)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999976 99999999999999


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+....+.
T Consensus       119 ~~~~~~g~  126 (488)
T PRK13252        119 LAPALEGE  126 (488)
T ss_pred             HHHHhcCc
Confidence            88765543

>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1

Probab=99.56  E-value=9.2e-14  Score=99.52  Aligned_cols=84  Identities=30%  Similarity=0.332  Sum_probs=78.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCc-cccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSV-WRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~-w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~   79 (100)
                      +.+|++.+++.|++||+   . |+.+|..+|.++|.+++++|.++.++|+.+++.|+|||..++..|+...++.+++++.
T Consensus        19 ~~~~v~~av~~A~~a~~---~~~~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~i~~~~~~~~   95 (455)
T cd07148          19 DWAAIDKALDTAHALFL---DRNNWLPAHERIAILERLADLMEERADELALLIAREGGKPLVDAKVEVTRAIDGVELAAD   95 (455)
T ss_pred             CHHHHHHHHHHHHHHHh---hcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999998   7 4679999999999999999999999999999999999999998899999999999999


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+.++.+.
T Consensus        96 ~~~~~~~~  103 (455)
T cd07148          96 ELGQLGGR  103 (455)
T ss_pred             HHHHhcCc
Confidence            98887654

Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.

>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like

Probab=99.56  E-value=5.1e-14  Score=100.63  Aligned_cols=84  Identities=29%  Similarity=0.402  Sum_probs=78.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.++++|+.||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..++..+++++..
T Consensus        19 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~   95 (452)
T cd07147          19 GPDDIEEAIAAAVKAFR---PMRALPAHRRAAILLHCVARLEERFEELAETIVLEAGKPIKDARGEVARAIDTFRIAAEE   95 (452)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999   999999999999999999999999999999999999999999998999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.+.
T Consensus        96 ~~~~~~~  102 (452)
T cd07147          96 ATRIYGE  102 (452)
T ss_pred             HHHhCCc
Confidence            8766544

Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.

>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA

Probab=99.56  E-value=6.1e-14  Score=101.84  Aligned_cols=84  Identities=29%  Similarity=0.400  Sum_probs=79.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|++||+   .|+.++..+|.++|.++++.|.+++++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus        67 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~i~~l~~~~~~  143 (518)
T cd07125          67 DAEDVDAALAIAAAAFA---GWSATPVEERAEILEKAADLLEANRGELIALAAAEAGKTLADADAEVREAIDFCRYYAAQ  143 (518)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.+.
T Consensus       144 ~~~~~~~  150 (518)
T cd07125         144 ARELFSD  150 (518)
T ss_pred             HHHhcCC
Confidence            8876644

The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.

>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like

Probab=99.56  E-value=6.2e-14  Score=100.88  Aligned_cols=84  Identities=43%  Similarity=0.696  Sum_probs=77.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCc-cccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAFKRGSV-WRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~-w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a   78 (100)
                      +.+|++.++++|++||+   . |+++|..+|.++|.+++++|.+++++|+++++.|+|||..++.. |+..+++.+++++
T Consensus        35 ~~~~v~~av~~A~~A~~---~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a  111 (477)
T cd07113          35 TEADVDAAVASAWRAFV---SAWAKTTPAERGRILLRLADLIEQHGEELAQLETLCSGKSIHLSRAFEVGQSANFLRYFA  111 (477)
T ss_pred             CHHHHHHHHHHHHHHhH---hhhccCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999998   6 99999999999999999999999999999999999999999986 9999999999999


Q ss_pred             hchhhhcCc
Q psy13780         79 GWCDKIEGS   87 (100)
Q Consensus        79 ~~~~~~~~~   87 (100)
                      ..+..+.+.
T Consensus       112 ~~~~~~~~~  120 (477)
T cd07113         112 GWATKINGE  120 (477)
T ss_pred             HHHHHhcCc
Confidence            877665443

NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.

>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed

Probab=99.56  E-value=3.2e-14  Score=111.23  Aligned_cols=81  Identities=27%  Similarity=0.459  Sum_probs=77.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.||++|+.||+   .|+.+|+.+|+++|.+++++|++|+++|+.+++.|+|||+.++..||..++++|+||+..
T Consensus       680 ~~~dv~~Av~aA~~A~~---~W~~~p~~eRa~iL~r~Adlle~~~~eL~~l~~~EaGKt~~~A~~EV~eaidflryyA~~  756 (1318)
T PRK11809        680 TPAEVEQALESAVNAAP---IWFATPPAERAAILERAADLMEAQMQTLMGLLVREAGKTFSNAIAEVREAVDFLRYYAGQ  756 (1318)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhh
Q psy13780         81 CDKI   84 (100)
Q Consensus        81 ~~~~   84 (100)
                      +...
T Consensus       757 a~~~  760 (1318)
T PRK11809        757 VRDD  760 (1318)
T ss_pred             HHHh
Confidence            7653

>TIGR01804 BADH glycine betaine aldehyde dehydrogenase

Probab=99.56  E-value=6.5e-14  Score=100.51  Aligned_cols=84  Identities=37%  Similarity=0.659  Sum_probs=77.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHH-HhhHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS-IFDLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a-~~ev~~~~~~~~~~a~   79 (100)
                      +.+|++.+++.|++||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++ ..|+..+++.+++++.
T Consensus        33 ~~~~v~~av~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~l~~~a~  109 (467)
T TIGR01804        33 TREDVERAIAAARRAQG---EWASMTPEERGRILRRIAELIRERNEELAKLETLDTGKTLEETSVADMDDIADVFEFFAG  109 (467)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHH
Confidence            46799999999999999   9999999999999999999999999999999999999999999 4599999999999999


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+.+..+.
T Consensus       110 ~~~~~~~~  117 (467)
T TIGR01804       110 LADKDGGE  117 (467)
T ss_pred             HHHHhCCc
Confidence            88776544

Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).

>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp

Probab=99.56  E-value=6.9e-14  Score=99.93  Aligned_cols=84  Identities=24%  Similarity=0.312  Sum_probs=78.8

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+|+.|++||+   .|+.+|..+|.++|.+++++|.++.++|+.+++.|+|||..++..|+..++..+++++..
T Consensus        16 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~ev~~~~~~~~~~~~~   92 (452)
T cd07102          16 SLEAVRAALERARAAQK---GWRAVPLEERKAIVTRAVELLAANTDEIAEELTWQMGRPIAQAGGEIRGMLERARYMISI   92 (452)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.++
T Consensus        93 ~~~~~~~   99 (452)
T cd07102          93 AEEALAD   99 (452)
T ss_pred             HHHhcCC
Confidence            8876554

PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.

>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like

Probab=99.56  E-value=4.9e-14  Score=100.87  Aligned_cols=82  Identities=32%  Similarity=0.605  Sum_probs=77.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|++||+   .|+.+|+++|.++|.+++++|.+|+++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus        17 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~   93 (456)
T cd07110          17 TAEDVDAAVRAARRAFP---RWKKTTGAERAKYLRAIAEGVRERREELAELEARDNGKPLDEAAWDVDDVAGCFEYYADL   93 (456)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hhhhc
Q psy13780         81 CDKIE   85 (100)
Q Consensus        81 ~~~~~   85 (100)
                      +.++.
T Consensus        94 ~~~~~   98 (456)
T cd07110          94 AEQLD   98 (456)
T ss_pred             HHHhh
Confidence            87764

Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.

>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN

Probab=99.56  E-value=3.6e-14  Score=105.53  Aligned_cols=78  Identities=19%  Similarity=0.222  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHH-hcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhch
Q psy13780          3 ADVDKAVESAKAA-FKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWC   81 (100)
Q Consensus         3 ~~v~~ai~~a~~a-~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~   81 (100)
                      .||++||++|++| |+   .|+++|+.+|.++|.+++++|++|+++|+. ++.|+|||+.++..||..+++.++||+..+
T Consensus        36 ~dv~~Av~~A~~aa~~---~W~~~~~~eR~~~L~~~a~~l~~~~~ela~-~~~e~GK~~~~a~~ev~~~~~~~~~~a~~~  111 (663)
T TIGR02278        36 LDVAAAVAWAREVGGP---ALRALTFHERARMLKALAQYLSERKEALYA-LAATTGATRRDNWVDIDGGIGTLFTYSSLG  111 (663)
T ss_pred             HHHHHHHHHHHHhcch---hhhcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            4899999999996 99   999999999999999999999999999999 589999999999999999999999999988


Q ss_pred             hhh
Q psy13780         82 DKI   84 (100)
Q Consensus        82 ~~~   84 (100)
                      .++
T Consensus       112 ~~~  114 (663)
T TIGR02278       112 RRE  114 (663)
T ss_pred             hhh
Confidence            763

This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.

>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase

Probab=99.55  E-value=8.9e-14  Score=100.18  Aligned_cols=83  Identities=31%  Similarity=0.496  Sum_probs=77.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCc-cccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAFKRGSV-WRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~-w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a   78 (100)
                      +.+|++.++++|++||.   . |+.+|..+|.++|++++++|.+|.++|+.+++.|+|||..++.. |+..++..+++++
T Consensus        34 ~~~~v~~av~~A~~A~~---~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~  110 (481)
T TIGR03216        34 GAAEVDAAVAAARAALK---GPWGKMTVAERADLLYAVADEIERRFDDFLAAEVADTGKPRSLASHLDIPRGAANFRVFA  110 (481)
T ss_pred             CHHHHHHHHHHHHHHhH---hhHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHhHHHHHHHHHHHHHHH
Confidence            46799999999999999   8 99999999999999999999999999999999999999999875 9999999999999


Q ss_pred             hchhhhcC
Q psy13780         79 GWCDKIEG   86 (100)
Q Consensus        79 ~~~~~~~~   86 (100)
                      ..+..+.+
T Consensus       111 ~~~~~~~~  118 (481)
T TIGR03216       111 DVVKNAPT  118 (481)
T ss_pred             HHHHHhcC
Confidence            98866543

Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.

>cd07099 ALDH_DDALDH Methylomonas sp

Probab=99.55  E-value=9.3e-14  Score=99.29  Aligned_cols=84  Identities=25%  Similarity=0.375  Sum_probs=78.8

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.++++|++||+   .|+++|..+|.++|.+++++|.+++++|+++++.|+|||..++..|+..++..++|++..
T Consensus        16 ~~~~v~~av~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~ev~~~~~~l~~~~~~   92 (453)
T cd07099          16 DPAEVAAAVARARAAQR---AWAALGVEGRAQRLLRWKRALADHADELAELLHAETGKPRADAGLEVLLALEAIDWAARN   92 (453)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999   999999999999999999999999999999999999999998888999999999999999


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.+.
T Consensus        93 ~~~~~~~   99 (453)
T cd07099          93 APRVLAP   99 (453)
T ss_pred             HHHhcCC
Confidence            8777543

4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.

>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like

Probab=99.55  E-value=7.4e-14  Score=99.96  Aligned_cols=84  Identities=36%  Similarity=0.612  Sum_probs=76.8

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCh-HHHHhhHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-EDSIFDLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~-~~a~~ev~~~~~~~~~~a~   79 (100)
                      +.+|++.++++|+.||+   .|+.+|..+|.++|++++++|.+|+++|+++++.|+|||. .++..|+..+++.+++++.
T Consensus        17 ~~~~v~~av~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~a~~ev~~~~~~~~~~~~   93 (457)
T cd07108          17 RAADVDRAVAAAKAAFP---EWAATPARERGKLLARIADALEARSEELARLLALETGNALRTQARPEAAVLADLFRYFGG   93 (457)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   9999999999999999999999999999999999999997 6887899999999999998


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      ....+.+.
T Consensus        94 ~~~~~~~~  101 (457)
T cd07108          94 LAGELKGE  101 (457)
T ss_pred             HHHHhCCc
Confidence            77655443

NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.

>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like

Probab=99.55  E-value=9.7e-14  Score=99.82  Aligned_cols=84  Identities=37%  Similarity=0.535  Sum_probs=78.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|+.||+   .|+.+|..+|.++|.+++++|.+++++|+++++.|+|||..++..|+..++..+++++..
T Consensus        35 ~~~~v~~av~~a~~A~~---~w~~~~~~~R~~~l~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~ev~~~i~~~~~~~~~  111 (478)
T cd07131          35 TASDVDAAVEAAREAFP---EWRKVPAPRRAEYLFRAAELLKKRKEELARLVTREMGKPLAEGRGDVQEAIDMAQYAAGE  111 (478)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999   999999999999999999999999999999999999999999988999999999999988


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus       112 ~~~~~~~  118 (478)
T cd07131         112 GRRLFGE  118 (478)
T ss_pred             HHHhCCc
Confidence            7765543

Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.

>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like

Probab=99.54  E-value=5.2e-14  Score=100.13  Aligned_cols=79  Identities=32%  Similarity=0.488  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhhh
Q psy13780          5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKI   84 (100)
Q Consensus         5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~   84 (100)
                      |+.||+.|++||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.++|++..+.++
T Consensus         1 v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~~~~~   77 (429)
T cd07100           1 IEAALDRAHAAFL---AWRKTSFAERAALLRKLADLLRERKDELARLITLEMGKPIAEARAEVEKCAWICRYYAENAEAF   77 (429)
T ss_pred             CHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4789999999999   9999999999999999999999999999999999999999999889999999999999998887


Q ss_pred             cC
Q psy13780         85 EG   86 (100)
Q Consensus        85 ~~   86 (100)
                      .+
T Consensus        78 ~~   79 (429)
T cd07100          78 LA   79 (429)
T ss_pred             cC
Confidence            54

Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.

>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like

Probab=99.54  E-value=6.6e-14  Score=99.63  Aligned_cols=80  Identities=29%  Similarity=0.394  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhh
Q psy13780          4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDK   83 (100)
Q Consensus         4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~   83 (100)
                      |++.+|++|++||+   .|+.+|.++|.++|.+++++|.+|.++|+++++.|+|||..++..|+..+++.+++++..+..
T Consensus         1 ~v~~ai~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~ei~~~~~~l~~~~~~~~~   77 (432)
T cd07105           1 DADQAVEAAAAAFP---AWSKTPPSERRDILLKAADLLESRRDEFIEAMMEETGATAAWAGFNVDLAAGMLREAASLITQ   77 (432)
T ss_pred             CHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999   999999999999999999999999999999999999999888888999999999999998876


Q ss_pred             hcC
Q psy13780         84 IEG   86 (100)
Q Consensus        84 ~~~   86 (100)
                      +.+
T Consensus        78 ~~~   80 (432)
T cd07105          78 IIG   80 (432)
T ss_pred             hcC
Confidence            533

Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.

>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like

Probab=99.54  E-value=1.2e-13  Score=99.52  Aligned_cols=86  Identities=35%  Similarity=0.661  Sum_probs=78.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|++||+.+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus        33 ~~~~v~~av~~A~~a~~~~-~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~  111 (482)
T cd07119          33 TAEDAKRAIAAARRAFDSG-EWPHLPAQERAALLFRIADKIREDAEELARLETLNTGKTLRESEIDIDDVANCFRYYAGL  111 (482)
T ss_pred             CHHHHHHHHHHHHHHcCCC-chhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999611 599999999999999999999999999999999999999999998999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.+..+.
T Consensus       112 ~~~~~~~  118 (482)
T cd07119         112 ATKETGE  118 (482)
T ss_pred             HHHhcCc
Confidence            8765544

Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.

>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase

Probab=99.54  E-value=9.4e-14  Score=100.17  Aligned_cols=81  Identities=40%  Similarity=0.673  Sum_probs=76.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.++++|++||+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus        36 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~iL~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~  112 (488)
T TIGR02299        36 GAADVDRAAKAAKEAFK---RWAELKAAERKRYLHKIADLIEQHADEIAVLECLDCGQPLRQTRQQVIRAAENFRFFADK  112 (488)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHh
Confidence            45799999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhh
Q psy13780         81 CDKI   84 (100)
Q Consensus        81 ~~~~   84 (100)
                      +.++
T Consensus       113 ~~~~  116 (488)
T TIGR02299       113 CEEA  116 (488)
T ss_pred             HHHh
Confidence            8743

This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.

>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like

Probab=99.54  E-value=5.6e-14  Score=100.59  Aligned_cols=78  Identities=22%  Similarity=0.179  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchhhhc
Q psy13780          7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCDKIE   85 (100)
Q Consensus         7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~   85 (100)
                      +.|++|+.||+   .|+.+|+.+|.++|.+++++|++|+++|+++++.|+|||+.++.. ||..++..++|++..+..+.
T Consensus         2 ~~v~~a~~a~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~~~~~~~   78 (449)
T cd07136           2 SLVEKQRAFFK---TGATKDVEFRIEQLKKLKQAIKKYENEILEALKKDLGKSEFEAYMTEIGFVLSEINYAIKHLKKWM   78 (449)
T ss_pred             hHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57889999999   999999999999999999999999999999999999999999975 99999999999999887775


Q ss_pred             Cc
Q psy13780         86 GS   87 (100)
Q Consensus        86 ~~   87 (100)
                      +.
T Consensus        79 ~~   80 (449)
T cd07136          79 KP   80 (449)
T ss_pred             CC
Confidence            43

Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.

>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase

Probab=99.54  E-value=9e-14  Score=100.24  Aligned_cols=84  Identities=23%  Similarity=0.346  Sum_probs=77.7

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.++++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus        33 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~~~~  109 (484)
T TIGR03240        33 SAAQVEAAVAAARAAFP---AWARLSLEERIAVVQRFAALLEERKEALARVIARETGKPLWETRTEVASMIGKVAISIKA  109 (484)
T ss_pred             CHHHHHHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999998887


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus       110 ~~~~~g~  116 (484)
T TIGR03240       110 YHERTGE  116 (484)
T ss_pred             HHHhcCc
Confidence            7665443

Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.

>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11

Probab=99.54  E-value=1e-13  Score=99.62  Aligned_cols=85  Identities=21%  Similarity=0.277  Sum_probs=79.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccC-CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNL-DASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~-~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~   79 (100)
                      +.+||+.++++|++||+   .|+.+ |..+|.++|.+++++|.+++++|+++++.|+|||..++..|+..++..+++++.
T Consensus        36 ~~~~v~~av~~A~~A~~---~w~~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~  112 (473)
T cd07082          36 SALEILEAAETAYDAGR---GWWPTMPLEERIDCLHKFADLLKENKEEVANLLMWEIGKTLKDALKEVDRTIDYIRDTIE  112 (473)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999   99988 999999999999999999999999999999999999998899999999999999


Q ss_pred             chhhhcCcc
Q psy13780         80 WCDKIEGST   88 (100)
Q Consensus        80 ~~~~~~~~~   88 (100)
                      .+.++.+..
T Consensus       113 ~~~~~~g~~  121 (473)
T cd07082         113 ELKRLDGDS  121 (473)
T ss_pred             HHHHhcCCc
Confidence            887775543

NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.

>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like

Probab=99.53  E-value=1.2e-13  Score=98.80  Aligned_cols=85  Identities=41%  Similarity=0.669  Sum_probs=78.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccc-cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWR-NLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~-~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~   79 (100)
                      +.+|++.+++.|+.||+   .|. .+|.++|.++|.+++++|.+|+++|+.+++.|+|||..++..|+..++..++|++.
T Consensus        17 ~~~dv~~av~~a~~A~~---~~~~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~   93 (454)
T cd07109          17 GAADVDRAVQAARRAFE---SGWLRLSPAERGRLLLRIARLIREHADELARLESLDTGKPLTQARADVEAAARYFEYYGG   93 (454)
T ss_pred             CHHHHHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   876 99999999999999999999999999999999999999998899999999999999


Q ss_pred             chhhhcCcc
Q psy13780         80 WCDKIEGST   88 (100)
Q Consensus        80 ~~~~~~~~~   88 (100)
                      ...++.+..
T Consensus        94 ~~~~~~g~~  102 (454)
T cd07109          94 AADKLHGET  102 (454)
T ss_pred             HHHHhcCcc
Confidence            887766543

Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.

>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like

Probab=99.53  E-value=1e-13  Score=99.45  Aligned_cols=83  Identities=30%  Similarity=0.386  Sum_probs=77.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.+++.|++||+   .|+++|..+|.++|.+++++|.+|+++|+++++.|+|||..++.. |+...++.+++++.
T Consensus        34 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~~  110 (466)
T cd07138          34 TAADVDRAVAAARRAFP---AWSATSVEERAALLERIAEAYEARADELAQAITLEMGAPITLARAAQVGLGIGHLRAAAD  110 (466)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999998865 99999999999999


Q ss_pred             chhhhcC
Q psy13780         80 WCDKIEG   86 (100)
Q Consensus        80 ~~~~~~~   86 (100)
                      .+.++..
T Consensus       111 ~~~~~~~  117 (466)
T cd07138         111 ALKDFEF  117 (466)
T ss_pred             hhhhccc
Confidence            8876643

The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.

>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like

Probab=99.53  E-value=1.9e-13  Score=98.21  Aligned_cols=85  Identities=32%  Similarity=0.445  Sum_probs=76.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.|+++|++||+.+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++.. |+..+++.+++++.
T Consensus        34 ~~~~v~~av~~a~~a~~~~-~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~~~  112 (471)
T cd07139          34 TPADVDAAVAAARRAFDNG-PWPRLSPAERAAVLRRLADALEARADELARLWTAENGMPISWSRRAQGPGPAALLRYYAA  112 (471)
T ss_pred             CHHHHHHHHHHHHHHcCCC-chhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999811 299999999999999999999999999999999999999988765 99999999999999


Q ss_pred             chhhhcC
Q psy13780         80 WCDKIEG   86 (100)
Q Consensus        80 ~~~~~~~   86 (100)
                      .+.++.+
T Consensus       113 ~~~~~~~  119 (471)
T cd07139         113 LARDFPF  119 (471)
T ss_pred             HHHHhcC
Confidence            8877653

The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.

>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like

Probab=99.53  E-value=1.6e-13  Score=98.87  Aligned_cols=85  Identities=51%  Similarity=0.888  Sum_probs=76.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccc-cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWR-NLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~-~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a   78 (100)
                      +.+|++.||++|++||..  .|+ .+|..+|.++|.++++.|.+|+++|+.+++.|+|||..++.. |+..++..+++++
T Consensus        42 ~~~~v~~av~~a~~a~~~--~W~~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~a  119 (481)
T cd07143          42 TEADVDIAVEVAHAAFET--DWGLKVSGSKRGRCLSKLADLMERNLDYLASIEALDNGKTFGTAKRVDVQASADTFRYYG  119 (481)
T ss_pred             CHHHHHHHHHHHHHhhhh--hhcccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999971  399 999999999999999999999999999999999999976544 9999999999999


Q ss_pred             hchhhhcCc
Q psy13780         79 GWCDKIEGS   87 (100)
Q Consensus        79 ~~~~~~~~~   87 (100)
                      ..+....+.
T Consensus       120 ~~a~~~~g~  128 (481)
T cd07143         120 GWADKIHGQ  128 (481)
T ss_pred             HHHHHhcCc
Confidence            988765443

NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.

>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional

Probab=99.53  E-value=1.6e-13  Score=98.64  Aligned_cols=84  Identities=38%  Similarity=0.616  Sum_probs=77.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.+++.|+.+|+   .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++.. |+..+++.+++++.
T Consensus        37 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~  113 (475)
T PRK13473         37 SAAQVDAAVAAADAAFP---EWSQTTPKERAEALLKLADAIEENADEFARLESLNCGKPLHLALNDEIPAIVDVFRFFAG  113 (475)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999   999999999999999999999999999999999999999998865 99999999999998


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+..+.+.
T Consensus       114 ~~~~~~g~  121 (475)
T PRK13473        114 AARCLEGK  121 (475)
T ss_pred             HHHHhcCc
Confidence            77666543

>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like

Probab=99.53  E-value=1.6e-13  Score=98.38  Aligned_cols=86  Identities=45%  Similarity=0.731  Sum_probs=78.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.+|+.|+.||+.+ .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++.. |+..++..++|++.
T Consensus        22 ~~~~v~~av~~a~~A~~~~-~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~  100 (462)
T cd07112          22 DAADVDRAVAAARRAFESG-VWSRLSPAERKAVLLRLADLIEAHRDELALLETLDMGKPISDALAVDVPSAANTFRWYAE  100 (462)
T ss_pred             CHHHHHHHHHHHHHhcCCC-ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999710 499999999999999999999999999999999999999999876 99999999999999


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+.++.+.
T Consensus       101 ~~~~~~~~  108 (462)
T cd07112         101 AIDKVYGE  108 (462)
T ss_pred             HHHHhcCc
Confidence            98877654

NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.

>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12

Probab=99.53  E-value=1.3e-13  Score=99.50  Aligned_cols=84  Identities=18%  Similarity=0.180  Sum_probs=76.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCcc--ccCCHHHH----HHHHHHHHHHHHHh--HHHHHHHHHHHcCCChHHHHhhHHHHHH
Q psy13780          1 MSADVDKAVESAKAAFKRGSVW--RNLDASGR----GKLIYKLAELIDKN--VDYLASLETLDNGKPYEDSIFDLGCASD   72 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w--~~~~~~~R----~~~L~~~~~~l~~~--~~~l~~~~~~e~Gk~~~~a~~ev~~~~~   72 (100)
                      +.+||+.||++|++||+   .|  ..++..+|    .++|.++++.|.++  .++|+++++.|+|||+.++..||..+++
T Consensus        32 ~~~dv~~Av~aA~~A~~---~W~~~~~~~~~R~l~~~~il~~~a~~l~~~~~~~~la~~~~~e~GK~~~~a~~Ev~~~~~  108 (489)
T cd07126          32 DEDEINEFVDSLRQCPK---SGLHNPLKNPERYLLYGDVSHRVAHELRKPEVEDFFARLIQRVAPKSDAQALGEVVVTRK  108 (489)
T ss_pred             CHHHHHHHHHHHHHHHH---hccccCCCHHHHhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            46899999999999999   88  56789999    89999999999999  5999999999999999999889999999


Q ss_pred             HHHHHHhchhhhcCc
Q psy13780         73 TFRYFAGWCDKIEGS   87 (100)
Q Consensus        73 ~~~~~a~~~~~~~~~   87 (100)
                      .++||+....++.+.
T Consensus       109 ~~~~~a~~~~~~~g~  123 (489)
T cd07126         109 FLENFAGDQVRFLAR  123 (489)
T ss_pred             HHHHHHHHHHHhcCc
Confidence            999999887766543

Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.

>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like

Probab=99.52  E-value=1.9e-13  Score=97.61  Aligned_cols=84  Identities=35%  Similarity=0.550  Sum_probs=78.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|+.||+   .|+.+|..+|.++|.++++.|.++.++|+.+++.|+|||..++..|+..++..++|++..
T Consensus        17 ~~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~   93 (451)
T cd07103          17 GAADADAAIDAAAAAFK---TWRKTTARERAAILRRWADLIRERAEDLARLLTLEQGKPLAEARGEVDYAASFLEWFAEE   93 (451)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus        94 ~~~~~~~  100 (451)
T cd07103          94 ARRIYGR  100 (451)
T ss_pred             HHHhcCc
Confidence            7665543

Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.

>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1

Probab=99.52  E-value=1.7e-13  Score=97.86  Aligned_cols=84  Identities=27%  Similarity=0.406  Sum_probs=77.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.++++.+++.|++||.   .|+.+|..+|.++|.+++++|.++.++|+.+++.|+|||..++..|+..++..+++++..
T Consensus        19 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~   95 (453)
T cd07149          19 SEEDVEKAIAAAKEGAK---EMKSLPAYERAEILERAAQLLEERREEFARTIALEAGKPIKDARKEVDRAIETLRLSAEE   95 (453)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999   999999999999999999999999999999999999999999988999999999999988


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus        96 ~~~~~~~  102 (453)
T cd07149          96 AKRLAGE  102 (453)
T ss_pred             HHHhcCc
Confidence            7666443

Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.

>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like

Probab=99.52  E-value=2.7e-13  Score=97.30  Aligned_cols=82  Identities=23%  Similarity=0.359  Sum_probs=76.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.+++.|++||+   .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||+.++.. |+..+++.+++++.
T Consensus        16 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~e~~~~~~~~~~~~~   92 (465)
T cd07098          16 TPEDVDEAIAAARAAQR---EWAKTSFAERRKVLRSLLKYILENQEEICRVACRDTGKTMVDASLGEILVTCEKIRWTLK   92 (465)
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999865 99999999999998


Q ss_pred             chhhhc
Q psy13780         80 WCDKIE   85 (100)
Q Consensus        80 ~~~~~~   85 (100)
                      .+..+.
T Consensus        93 ~~~~~~   98 (465)
T cd07098          93 HGEKAL   98 (465)
T ss_pred             HHHHHh
Confidence            876643

Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.

>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like

Probab=99.51  E-value=1.5e-13  Score=98.09  Aligned_cols=78  Identities=36%  Similarity=0.528  Sum_probs=74.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|+.||+   .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||..++..|+..++..+++++..
T Consensus        17 ~~~~v~~av~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~~~~   93 (446)
T cd07106          17 SEAQLDQAVAAAKAAFP---GWSATPLEERRAALLAIADAIEANAEELARLLTLEQGKPLAEAQFEVGGAVAWLRYTASL   93 (446)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999887


Q ss_pred             h
Q psy13780         81 C   81 (100)
Q Consensus        81 ~   81 (100)
                      .
T Consensus        94 ~   94 (446)
T cd07106          94 D   94 (446)
T ss_pred             h
Confidence            5

Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.

>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like

Probab=99.51  E-value=2e-13  Score=97.70  Aligned_cols=84  Identities=52%  Similarity=0.895  Sum_probs=77.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.++++.+++.|+.||+   .|+.+|.++|.++|.+++++|.+|+++|+.+++.|+|||..++.. |+..+++.+++++.
T Consensus        17 ~~~~v~~av~~a~~A~~---~w~~~~~~~R~~~l~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~i~~l~~~~~   93 (453)
T cd07115          17 SAEDVDAAVAAARAAFE---AWSAMDPAERGRILWRLAELILANADELARLESLDTGKPIRAARRLDVPRAADTFRYYAG   93 (453)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999   999999999999999999999999999999999999999999975 99999999999998


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      ......+.
T Consensus        94 ~~~~~~g~  101 (453)
T cd07115          94 WADKIEGE  101 (453)
T ss_pred             HHHHhcCc
Confidence            77665443

4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.

>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins

Probab=99.51  E-value=2.5e-13  Score=97.05  Aligned_cols=77  Identities=17%  Similarity=0.177  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchhhhc
Q psy13780          7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCDKIE   85 (100)
Q Consensus         7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~   85 (100)
                      .|+++|++||+   .|+.+|+.+|.++|.++++.|++|+++|+++++.|+|||..++.. |+..+++.+++++..+.++.
T Consensus         2 ~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~~~~~~~   78 (443)
T cd07132           2 EAVRRAREAFS---SGKTRPLEFRIQQLEALLRMLEENEDEIVEALAKDLRKPKFEAVLSEILLVKNEIKYAISNLPEWM   78 (443)
T ss_pred             hHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            58899999999   999999999999999999999999999999999999999999975 99999999999999888775


Q ss_pred             C
Q psy13780         86 G   86 (100)
Q Consensus        86 ~   86 (100)
                      +
T Consensus        79 ~   79 (443)
T cd07132          79 K   79 (443)
T ss_pred             C
Confidence            4

NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.

>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins

Probab=99.51  E-value=1.9e-13  Score=97.10  Aligned_cols=80  Identities=30%  Similarity=0.444  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhh
Q psy13780          4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDK   83 (100)
Q Consensus         4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~   83 (100)
                      |++++|+.|+.||+   .|+.+|..+|.++|.+++++|.+++++|+++++.|+|||..++..|+..+++.+++++..+.+
T Consensus         1 ~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~ei~~~~~~l~~~~~~~~~   77 (431)
T cd07104           1 DVDRAYAAAAAAQK---AWAATPPQERAAILRKAAEILEERRDEIADWLIRESGSTRPKAAFEVGAAIAILREAAGLPRR   77 (431)
T ss_pred             CHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999   999999999999999999999999999999999999999999988999999999999988765


Q ss_pred             hcC
Q psy13780         84 IEG   86 (100)
Q Consensus        84 ~~~   86 (100)
                      ..+
T Consensus        78 ~~~   80 (431)
T cd07104          78 PEG   80 (431)
T ss_pred             hcC
Confidence            544

ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.

>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional

Probab=99.51  E-value=1.7e-13  Score=102.17  Aligned_cols=78  Identities=19%  Similarity=0.177  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHH-hcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhch
Q psy13780          3 ADVDKAVESAKAA-FKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWC   81 (100)
Q Consensus         3 ~~v~~ai~~a~~a-~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~   81 (100)
                      +|++.||++|+.| |+   .|+++|+.+|+++|.+++++|++|.++|+. ++.|+|||+.++..|+..++..++||+..+
T Consensus        40 ~dv~~Av~~A~~A~~~---~W~~~~~~eR~~~L~~~a~~l~~~~~ela~-l~~e~GK~~~~a~~ev~~~~~~~~~~a~~~  115 (675)
T PRK11563         40 LDFAAALAYAREVGGP---ALRALTFHERAAMLKALAKYLLERKEELYA-LSAQTGATRRDSWIDIEGGIGTLFTYASKG  115 (675)
T ss_pred             HHHHHHHHHHHHhhhh---hhhcCCHHHHHHHHHHHHHHHHHhHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999998 78   999999999999999999999999999998 589999999999999999999999999987


Q ss_pred             hhh
Q psy13780         82 DKI   84 (100)
Q Consensus        82 ~~~   84 (100)
                      .+.
T Consensus       116 ~~~  118 (675)
T PRK11563        116 RRE  118 (675)
T ss_pred             hhh
Confidence            654

>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed

Probab=99.50  E-value=2e-13  Score=106.55  Aligned_cols=83  Identities=27%  Similarity=0.475  Sum_probs=78.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.++|+.||+.|+.||+   .|+.+|..+|.++|.+++++|++++++|+.+++.|+|||+.++..||..++++++||+..
T Consensus       588 ~~~~v~~Av~aA~~A~~---~W~~~~~~~Ra~iL~raAdll~~~~~eL~~l~~~E~GKt~~ea~~Ev~eaid~lr~ya~~  664 (1208)
T PRK11905        588 SAEDVERALAAAQAAFP---EWSATPAAERAAILERAADLMEAHMPELFALAVREAGKTLANAIAEVREAVDFLRYYAAQ  664 (1208)
T ss_pred             CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhhcC
Q psy13780         81 CDKIEG   86 (100)
Q Consensus        81 ~~~~~~   86 (100)
                      +..+.+
T Consensus       665 a~~~~~  670 (1208)
T PRK11905        665 ARRLLN  670 (1208)
T ss_pred             HHHhcC
Confidence            877643

>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like

Probab=99.50  E-value=4.3e-13  Score=96.03  Aligned_cols=85  Identities=48%  Similarity=0.792  Sum_probs=76.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.+++.|+.||..+ .|+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.+++++..
T Consensus        17 ~~~~v~~av~~a~~a~~~~-~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~ev~~~~~~~~~~a~~   95 (457)
T cd07114          17 SAADVDRAVAAARAAFEGG-AWRKLTPTERGKLLRRLADLIEANAEELAELETRDNGKLIRETRAQVRYLAEWYRYYAGL   95 (457)
T ss_pred             CHHHHHHHHHHHHHHcCCC-chhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999610 499999999999999999999999999999999999999999988999999999999887


Q ss_pred             hhhhcC
Q psy13780         81 CDKIEG   86 (100)
Q Consensus        81 ~~~~~~   86 (100)
                      ...+.+
T Consensus        96 ~~~~~~  101 (457)
T cd07114          96 ADKIEG  101 (457)
T ss_pred             HHHhcC
Confidence            665543

Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.

>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins

Probab=99.49  E-value=2.7e-13  Score=96.66  Aligned_cols=78  Identities=21%  Similarity=0.207  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchhhh
Q psy13780          6 DKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCDKI   84 (100)
Q Consensus         6 ~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~   84 (100)
                      ..+++.|+.||.   .|+.+|..+|.++|++++++|++++++|+.+++.|+|||+.++.. |+..+++.++|++..+..+
T Consensus         2 ~~a~~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~~~~~~   78 (432)
T cd07137           2 PRLVRELRETFR---SGRTRSAEWRKSQLKGLLRLVDENEDDIFAALRQDLGKPSAESFRDEVSVLVSSCKLAIKELKKW   78 (432)
T ss_pred             hHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999   999999999999999999999999999999999999999999875 9999999999999988765


Q ss_pred             cC
Q psy13780         85 EG   86 (100)
Q Consensus        85 ~~   86 (100)
                      .+
T Consensus        79 ~~   80 (432)
T cd07137          79 MA   80 (432)
T ss_pred             hC
Confidence            54

Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.

>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins

Probab=99.49  E-value=3.2e-13  Score=96.05  Aligned_cols=77  Identities=14%  Similarity=0.141  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchhhhc
Q psy13780          7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCDKIE   85 (100)
Q Consensus         7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~   85 (100)
                      ++|++|+.||.   .|+.+|+.+|.++|.+++++|++++++|+++++.|+|||..++.. |+..++..+++++..+..+.
T Consensus         2 ~~v~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~~~~~Ev~~~~~~~~~~~~~~~~~~   78 (426)
T cd07087           2 ELVARLRETFL---TGKTRSLEWRKAQLKALKRMLTENEEEIAAALYADLGKPPAEAYLTEIAVVLGEIDHALKHLKKWM   78 (426)
T ss_pred             hHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            48999999999   999999999999999999999999999999999999999887765 99999999999998877664


Q ss_pred             C
Q psy13780         86 G   86 (100)
Q Consensus        86 ~   86 (100)
                      +
T Consensus        79 ~   79 (426)
T cd07087          79 K   79 (426)
T ss_pred             C
Confidence            3

ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.

>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like

Probab=99.48  E-value=7.2e-13  Score=94.68  Aligned_cols=83  Identities=43%  Similarity=0.647  Sum_probs=75.8

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.+++.|+.||+   .|+.+|..+|.++|.+++++|.+++++|+++++.|+|||..++.. |+..+++.+++++.
T Consensus        17 ~~~~v~~av~~a~~a~~---~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~~~~~ev~~~i~~~~~~~~   93 (450)
T cd07092          17 SAADVDAAVAAAHAAFP---SWRRTTPAERSKALLKLADAIEENAEELAALESRNTGKPLHLVRDDELPGAVDNFRFFAG   93 (450)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999   999999999999999999999999999999999999999987654 99999999999998


Q ss_pred             chhhhcC
Q psy13780         80 WCDKIEG   86 (100)
Q Consensus        80 ~~~~~~~   86 (100)
                      .+..+.+
T Consensus        94 ~~~~~~~  100 (450)
T cd07092          94 AARTLEG  100 (450)
T ss_pred             HHHHhcC
Confidence            7765543

NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.

>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like

Probab=99.48  E-value=5.8e-13  Score=96.05  Aligned_cols=81  Identities=37%  Similarity=0.620  Sum_probs=74.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.+++.|+++|+   .|+++|..+|.++|.+++++|.+++++|+.+++.|+|||+.++.. |+...+..+.+++.
T Consensus        57 ~~~~v~~ai~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~~~  133 (480)
T cd07111          57 EEEDVDAAVAAARTAFE---SWSALPGHVRARHLYRIARHIQKHQRLFAVLESLDNGKPIRESRDCDIPLVARHFYHHAG  133 (480)
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999   999999999999999999999999999999999999999999975 99999999998887


Q ss_pred             chhhh
Q psy13780         80 WCDKI   84 (100)
Q Consensus        80 ~~~~~   84 (100)
                      .....
T Consensus       134 ~~~~~  138 (480)
T cd07111         134 WAQLL  138 (480)
T ss_pred             HHHHh
Confidence            76544

Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.

>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like

Probab=99.47  E-value=7.6e-13  Score=95.42  Aligned_cols=84  Identities=48%  Similarity=0.849  Sum_probs=76.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCc-cccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHH-HhhHHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAFKRGSV-WRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS-IFDLGCASDTFRYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~-w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a-~~ev~~~~~~~~~~a   78 (100)
                      +.+|++.++++|++||+   . |+.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++ ..|+..++..+++++
T Consensus        43 ~~~~v~~ai~~A~~A~~---~~w~~~~~~~R~~iL~~~a~~l~~~~~~l~~~~~~e~Gk~~~~~~~~ev~~~~~~l~~~~  119 (484)
T cd07144          43 GEEDVDKAVKAARKAFE---SWWSKVTGEERGELLDKLADLVEKNRDLLAAIEALDSGKPYHSNALGDLDEIIAVIRYYA  119 (484)
T ss_pred             CHHHHHHHHHHHHHHHH---hhHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999998   6 889999999999999999999999999999999999999876 459999999999999


Q ss_pred             hchhhhcCc
Q psy13780         79 GWCDKIEGS   87 (100)
Q Consensus        79 ~~~~~~~~~   87 (100)
                      ..+.++.+.
T Consensus       120 ~~~~~~~g~  128 (484)
T cd07144         120 GWADKIQGK  128 (484)
T ss_pred             HHHHHhcCc
Confidence            988777554

NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.

>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like

Probab=99.47  E-value=7.4e-13  Score=94.72  Aligned_cols=82  Identities=38%  Similarity=0.619  Sum_probs=76.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++++++.|+.||.   .|+.+|.++|.++|.+++++|.+++++|+.+++.|+|||..++.. |+..++..+++++.
T Consensus        17 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~~~~~ev~~~i~~~~~~~~   93 (455)
T cd07093          17 GAAEVDAAVAAAKEAFP---GWSRMSPAERARILHKVADLIEARADELALLESLDTGKPITLARTRDIPRAAANFRFFAD   93 (455)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999988866 99999999999999


Q ss_pred             chhhhc
Q psy13780         80 WCDKIE   85 (100)
Q Consensus        80 ~~~~~~   85 (100)
                      .+.+..
T Consensus        94 ~~~~~~   99 (455)
T cd07093          94 YILQLD   99 (455)
T ss_pred             hHHHhC
Confidence            876643

In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.

>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like

Probab=99.47  E-value=9.8e-13  Score=94.82  Aligned_cols=87  Identities=61%  Similarity=0.989  Sum_probs=77.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.++++.+++.|++||+.++.|+.+|..+|.++|.+++++|.++.++|+.+++.|+|||..++.. |+..++..+++++.
T Consensus        42 ~~~~v~~av~~A~~A~~~~~~W~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~~~~l~~~a~  121 (481)
T cd07141          42 DKADVDKAVKAARAAFKLGSPWRTMDASERGRLLNKLADLIERDRAYLASLETLDNGKPFSKSYLVDLPGAIKVLRYYAG  121 (481)
T ss_pred             CHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999997211599999999999999999999999999999999999999977654 99999999999999


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+.++.+.
T Consensus       122 ~~~~~~g~  129 (481)
T cd07141         122 WADKIHGK  129 (481)
T ss_pred             HHHHhcCc
Confidence            88777654

NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.

>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins

Probab=99.46  E-value=1.3e-12  Score=93.99  Aligned_cols=84  Identities=50%  Similarity=0.836  Sum_probs=75.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCcc--ccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAFKRGSVW--RNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYF   77 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w--~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~   77 (100)
                      +.+|++.+++.|++||+   .|  +.+|..+|.++|.+++++|.+++++|+.+++.|+|||..++.. |+..++..++++
T Consensus        39 ~~~~v~~av~~A~~A~~---~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~~~~~ev~~~~~~~~~~  115 (476)
T cd07091          39 DEEDVDAAVKAARAAFE---TGWWRKMDPRERGRLLNKLADLIERDRDELAALESLDNGKPLEESAKGDVALSIKCLRYY  115 (476)
T ss_pred             CHHHHHHHHHHHHHhcc---cCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999   75  4999999999999999999999999999999999999976654 999999999999


Q ss_pred             HhchhhhcCc
Q psy13780         78 AGWCDKIEGS   87 (100)
Q Consensus        78 a~~~~~~~~~   87 (100)
                      +..+.+..+.
T Consensus       116 a~~~~~~~~~  125 (476)
T cd07091         116 AGWADKIQGK  125 (476)
T ss_pred             HHHHHHhcCc
Confidence            9887665544

ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co

>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase

Probab=99.45  E-value=6.3e-13  Score=95.28  Aligned_cols=76  Identities=28%  Similarity=0.381  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhh
Q psy13780          5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDK   83 (100)
Q Consensus         5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~   83 (100)
                      |++|++.|+.||+   .|+.+|..+|.++|.+++++|++++++|+.+++.|+|||..++..|+..++..+++++..+..
T Consensus         1 v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gkp~~~~~~ev~~~~~~l~~~a~~~~~   76 (454)
T cd07129           1 VDAAAAAAAAAFE---SYRALSPARRAAFLEAIADEIEALGDELVARAHAETGLPEARLQGELGRTTGQLRLFADLVRE   76 (454)
T ss_pred             ChHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4789999999999   999999999999999999999999999999999999999998888999999999999987754

Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.

>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase

Probab=99.43  E-value=2.5e-12  Score=92.57  Aligned_cols=81  Identities=23%  Similarity=0.338  Sum_probs=73.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|+++|++.|+++|+      .+++.+|.++|.+++++|.+++++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus        37 ~~~~v~~av~~A~~a~~------~~~~~~R~~~l~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~  110 (472)
T TIGR03250        37 SVDDVRRAFAIAAAYRP------TLTRYERSAILDRAAALLAARKEEISDLITLESGLSKKDSLYEVGRVADVLTFAAAE  110 (472)
T ss_pred             CHHHHHHHHHHHHHHHh------hCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999988775      579999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.+.
T Consensus       111 ~~~~~~~  117 (472)
T TIGR03250       111 ALRDDGQ  117 (472)
T ss_pred             HHHhcCc
Confidence            8766543

It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.

>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like

Probab=99.43  E-value=6.2e-13  Score=95.03  Aligned_cols=74  Identities=16%  Similarity=0.091  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhh
Q psy13780          6 DKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDK   83 (100)
Q Consensus         6 ~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~   83 (100)
                      +.||+.|+.||+   .|+++|+.+|.++|.+++++|++|+++|+.+++.|+|||. ++..|+..++..++||+..+..
T Consensus         2 ~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~-~~~~ev~~~i~~~~~~~~~~~~   75 (442)
T cd07084           2 ERALLAADISTK---AARRLALPKRADFLARIIQRLAAKSYDIAAGAVLVTGKGW-MFAENICGDQVQLRARAFVIYS   75 (442)
T ss_pred             hHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCch-hhhhhhcchHHHHHHHHHHHHh
Confidence            579999999999   9999999999999999999999999999999999999999 6666999999999999888754

ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.

>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like

Probab=99.43  E-value=1.7e-12  Score=92.63  Aligned_cols=76  Identities=13%  Similarity=0.029  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchhhhc
Q psy13780          7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCDKIE   85 (100)
Q Consensus         7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~~~   85 (100)
                      .++++|+.||+   .|+.+|..+|.++|.+++++|++++++|+++++.|+|||+.++.. |+..++..+++++..+..+.
T Consensus         2 ~~~~~a~~a~~---~W~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~~~~~~~~~   78 (433)
T cd07134           2 RVFAAQQAHAL---ALRASTAAERIAKLKRLKKAILARREEIIAALAADFRKPAAEVDLTEILPVLSEINHAIKHLKKWM   78 (433)
T ss_pred             hHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57889999999   999999999999999999999999999999999999999999974 99999999999998766543

Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.

>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like

Probab=99.42  E-value=8.7e-13  Score=94.18  Aligned_cols=72  Identities=18%  Similarity=0.208  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHH-HHHHHHh
Q psy13780          5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASD-TFRYFAG   79 (100)
Q Consensus         5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~-~~~~~a~   79 (100)
                      |+.|+++|+.||.   .|+++|..+|.++|.+++++|++++++|+.+++.|+|||+.++.. ++...+. .+++++.
T Consensus         1 ~~~av~~A~~A~~---~W~~~~~~eR~~~L~~~a~~l~~~~eela~~~~~E~Gk~~~ea~~~e~~~~~~~~~~~~~~   74 (436)
T cd07122           1 VDELVERARKAQR---EFATFSQEQVDKIVEAVAWAAADAAEELAKMAVEETGMGVVEDKVIKNHFASEYVYNDIKD   74 (436)
T ss_pred             ChHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999999999   999999999999999999999999999999999999999999886 7887777 7888886

Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.

>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like

Probab=99.41  E-value=2.9e-12  Score=91.76  Aligned_cols=81  Identities=23%  Similarity=0.344  Sum_probs=72.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.++++.|+++|++      .|+.+|..+|.++|.++++.|.+++++|+++++.|+|||..++..|+..+++.++|++..
T Consensus        19 ~~~~v~~av~~A~~------~~~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~   92 (451)
T cd07146          19 TEEALREALALAAS------YRSTLTRYQRSAILNKAAALLEARREEFARLITLESGLCLKDTRYEVGRAADVLRFAAAE   92 (451)
T ss_pred             CHHHHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999988764      477799999999999999999999999999999999999999988999999999999988


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.++
T Consensus        93 ~~~~~~~   99 (451)
T cd07146          93 ALRDDGE   99 (451)
T ss_pred             HHHhcCc
Confidence            7766443

Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.

>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like

Probab=99.39  E-value=6e-12  Score=89.81  Aligned_cols=78  Identities=19%  Similarity=0.141  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCC-hHHHHh-hHHHHHHHHHHHHhchhhh
Q psy13780          7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP-YEDSIF-DLGCASDTFRYFAGWCDKI   84 (100)
Q Consensus         7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~-~~~a~~-ev~~~~~~~~~~a~~~~~~   84 (100)
                      ..+++|+.||+   .|+.+|+.+|.++|++++++|++|+++|+++++.|+||+ ..++.. |+...+..++|++..+.++
T Consensus         2 ~~~~~a~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~~~e~Gk~~~~ea~~~ev~~~i~~~~~~~~~~~~~   78 (434)
T cd07133           2 ALLERQKAAFL---ANPPPSLEERRDRLDRLKALLLDNQDALAEAISADFGHRSRHETLLAEILPSIAGIKHARKHLKKW   78 (434)
T ss_pred             hHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788999999   999999999999999999999999999999999999985 567754 9999999999999988776


Q ss_pred             cCc
Q psy13780         85 EGS   87 (100)
Q Consensus        85 ~~~   87 (100)
                      .++
T Consensus        79 ~~~   81 (434)
T cd07133          79 MKP   81 (434)
T ss_pred             hCC
Confidence            543

Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.

>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins

Probab=99.39  E-value=2.1e-12  Score=92.29  Aligned_cols=65  Identities=18%  Similarity=0.048  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHH
Q psy13780          5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASD   72 (100)
Q Consensus         5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~   72 (100)
                      ++.|+++|++||+   .|+.+|+.+|.++|.+++++|++|+++|+.+++.|+|||+.++..++...+.
T Consensus         1 ~~~Ai~~A~~A~~---~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk~~~ea~~~~~~~~~   65 (439)
T cd07081           1 LDDAVAAAKVAQQ---GLSCKSQEMVDLIFRAAAEAAEDARIDLAKLAVSETGMGRVEDKVIKNHFAA   65 (439)
T ss_pred             CHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            4789999999999   9999999999999999999999999999999999999999998765544443

Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.

>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like

Probab=99.39  E-value=4.4e-12  Score=92.73  Aligned_cols=80  Identities=16%  Similarity=0.206  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-----hHHHHHHHHHHHH
Q psy13780          4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-----DLGCASDTFRYFA   78 (100)
Q Consensus         4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-----ev~~~~~~~~~~a   78 (100)
                      |++.+|++|++||+   .|+++|+.+|..+|.+++++|.+++++|+.+++.|+|||..++..     |+..++..++|++
T Consensus        85 dv~~ai~aA~~A~~---~W~~~~~~~R~~il~~~a~~l~~~~~ela~a~~~e~Gk~~~~a~qa~~~~evd~a~e~~~~a~  161 (549)
T cd07127          85 DPDALLAAARAAMP---GWRDAGARARAGVCLEILQRLNARSFEMAHAVMHTTGQAFMMAFQAGGPHAQDRGLEAVAYAW  161 (549)
T ss_pred             HHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHCCCHHHHHhcccHHHHHHHHHHHHHHH
Confidence            89999999999999   999999999999999999999999999999999999999987752     7999999999999


Q ss_pred             hchhhhcC
Q psy13780         79 GWCDKIEG   86 (100)
Q Consensus        79 ~~~~~~~~   86 (100)
                      .....+.+
T Consensus       162 ~~~~~~~~  169 (549)
T cd07127         162 REMSRIPP  169 (549)
T ss_pred             HHHHhccc
Confidence            88766543

Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.

>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN

Probab=99.35  E-value=7.9e-12  Score=91.42  Aligned_cols=81  Identities=16%  Similarity=0.216  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-----hHHHHHHHHHHHH
Q psy13780          4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-----DLGCASDTFRYFA   78 (100)
Q Consensus         4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-----ev~~~~~~~~~~a   78 (100)
                      +.+.+|++|++||+   .|+++|+.+|..+|.+++++|.+|+++|+.+++.|+|||..++..     ++...+..++|++
T Consensus        85 ~~~~av~aA~~A~~---~W~~~~~~~R~~vL~~~a~~l~~~~~elA~~~~~etGk~~~~a~e~gkp~~~~r~i~~~~~~~  161 (551)
T TIGR02288        85 DGDALLDAAHAALP---GWRDAGARARAGVCLEILQRLNARSFEIAHAVMHTTGQAFMMAFQAGGPHAQDRGLEAVAYAY  161 (551)
T ss_pred             CHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCCCHHHHHhccChHHHHHHHHHHHHHH
Confidence            35899999999999   999999999999999999999999999999999999999987742     6778899999999


Q ss_pred             hchhhhcCc
Q psy13780         79 GWCDKIEGS   87 (100)
Q Consensus        79 ~~~~~~~~~   87 (100)
                      ....++.+.
T Consensus       162 ~~~~~~~g~  170 (551)
T TIGR02288       162 REMSRIPET  170 (551)
T ss_pred             HHHHhccCc
Confidence            887666543

This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.

>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like

Probab=99.31  E-value=1.1e-11  Score=88.39  Aligned_cols=69  Identities=29%  Similarity=0.275  Sum_probs=61.2

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHh
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAG   79 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~   79 (100)
                      -+|++.|+++|++||+   .|+.+|..+|.++|.+++++|.+|.++|+++++.|+|||..++.      +..+++++.
T Consensus         3 ~~~v~~av~~A~~A~~---~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk~~~~~~------~~~~~~~~~   71 (429)
T cd07121           3 FATVDDAVAAAKAAQK---QYRKCTLADREKIIEAIREALLSNAEELAEMAVEETGMGRVEDK------IAKNHLAAE   71 (429)
T ss_pred             hhhHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHH
Confidence            3689999999999999   99999999999999999999999999999999999999997664      334555544

Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.

>KOG2452|consensus

Probab=99.30  E-value=1.4e-12  Score=93.08  Aligned_cols=90  Identities=50%  Similarity=0.939  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhc
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGW   80 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~   80 (100)
                      ..||+.|+.+|+.||..| .|.+++..+|.+.|.+++++|++|.++|+.+.+.+.|.-..-+.- .|..+++.++||+.+
T Consensus       458 v~dvd~av~aak~afe~g-~w~~~sar~rg~~~y~la~lme~h~eelat~e~ldagavytlalkthvgmsi~~~ryfagw  536 (881)
T KOG2452|consen  458 VTDVDKAVAAAKGAFENG-RWGKISARDRGRLMYRLADLMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAGW  536 (881)
T ss_pred             hhhHHHHHHHHhhhhhcC-cccccchhhhhhhhhhccchhhhccchhhhhhhccccceeeeeehhhcCceehHHHHhhhh
Confidence            468999999999999865 999999999999999999999999999999999999988777654 899999999999999


Q ss_pred             hhhhcCcccCCC
Q psy13780         81 CDKIEGSTIPSE   92 (100)
Q Consensus        81 ~~~~~~~~~~~~   92 (100)
                      .+++.+..+|.+
T Consensus       537 cdkiqg~tipi~  548 (881)
T KOG2452|consen  537 CDKIQGSTIPIN  548 (881)
T ss_pred             hhhccCceeccc
Confidence            999998877654

>PLN02418 delta-1-pyrroline-5-carboxylate synthase

Probab=99.30  E-value=2.2e-11  Score=91.45  Aligned_cols=81  Identities=14%  Similarity=0.265  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHcC--CChHHHH----hhHHHH
Q psy13780          3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLE------TLDNG--KPYEDSI----FDLGCA   70 (100)
Q Consensus         3 ~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~------~~e~G--k~~~~a~----~ev~~~   70 (100)
                      +.++.++++|++||+   .|+.+|+.+|.++|.++++.|.+|.++|++++      +.|+|  ||+.++.    .|+..+
T Consensus       294 ~~~~~~~~aA~~A~~---~W~~~~~~eR~~~L~~~a~~l~~~~~ela~~~~~d~~~~~E~G~~k~~~~~~~~~~~ev~~~  370 (718)
T PLN02418        294 VGAREMAVAARESSR---KLQALSSEERKKILLDVADALEANEELIKAENELDVAAAQEAGYEKSLVSRLTLKPGKIASL  370 (718)
T ss_pred             HHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHhCCchhHHHHHhccHHHHHHH
Confidence            358999999999999   99999999999999999999999999999996      77999  8887763    499999


Q ss_pred             HHHHHHHHhchhhhcCc
Q psy13780         71 SDTFRYFAGWCDKIEGS   87 (100)
Q Consensus        71 ~~~~~~~a~~~~~~~~~   87 (100)
                      +..++||+.. ....+.
T Consensus       371 ~~~~~~~a~~-~~~~g~  386 (718)
T PLN02418        371 AASIRQLADM-EDPIGR  386 (718)
T ss_pred             HHHHHHHhcC-ccccCc
Confidence            9999999998 334343

>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional

Probab=99.30  E-value=2.2e-11  Score=92.98  Aligned_cols=75  Identities=19%  Similarity=0.093  Sum_probs=65.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a   78 (100)
                      +.+||+.+|++|+.||+   .|+++|.++|.++|.+++++|.+++++|+++++.|+|||..++.. ++..++..+.++.
T Consensus        10 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~EtGk~~~e~~~~~~~~~~~~~~~~~   85 (862)
T PRK13805         10 NVAELDALVEKAKKAQE---EFATFTQEQVDKIVRAAALAALDARIPLAKMAVEETGRGVVEDKVIKNHFASEYIYNSY   85 (862)
T ss_pred             CHHHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHh
Confidence            46799999999999999   999999999999999999999999999999999999999988875 4544545554443

>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional

Probab=99.28  E-value=1.6e-11  Score=87.33  Aligned_cols=79  Identities=14%  Similarity=0.181  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCh----HHHH--------hhHHH
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY----EDSI--------FDLGC   69 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~----~~a~--------~ev~~   69 (100)
                      .+|++.++++|+.||+   .|+.+|..+|.++|++++++|++|+++|+++++.|+|++.    .++.        .|+..
T Consensus         3 ~~~v~~av~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~g~~~~~g~~~~~~~~~~~~~~ev~~   79 (417)
T PRK00197          3 MEYLEELGRRAKAASR---KLAQLSTAQKNRALLAIADALEANAAEILAANAKDLAAARANGLSAAMLDRLLLTEARIEG   79 (417)
T ss_pred             hhHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCCHHHHHH
Confidence            4789999999999999   9999999999999999999999999999999998887774    2432        47888


Q ss_pred             HHHHHHHHHhchhh
Q psy13780         70 ASDTFRYFAGWCDK   83 (100)
Q Consensus        70 ~~~~~~~~a~~~~~   83 (100)
                      ++..+++++.....
T Consensus        80 ~~~~~~~~a~~~~~   93 (417)
T PRK00197         80 IAEGLRQVAALPDP   93 (417)
T ss_pred             HHHHHHHHhhcCCC
Confidence            99999999876543

>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family

Probab=99.26  E-value=6.1e-11  Score=84.24  Aligned_cols=79  Identities=43%  Similarity=0.778  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhhhc
Q psy13780          6 DKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIE   85 (100)
Q Consensus         6 ~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~   85 (100)
                      +++++.|+.||.   .|+.+|..+|.++|.++++.|.++.++|+.+++.|+|+|...+..|+..++..+++++..+.++.
T Consensus         1 ~~av~~a~~a~~---~w~~~~~~~R~~~l~~~~~~l~~~~~~l~~~~~~etG~~~~~~~~ei~~~i~~l~~~~~~~~~~~   77 (432)
T cd07078           1 DAAVAAARAAFK---AWAALPPAERAAILRKLADLLEERREELAALETLETGKPIEEALGEVARAADTFRYYAGLARRLH   77 (432)
T ss_pred             CHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            368999999999   99999999999999999999999999999999999999998888899999999999998887765


Q ss_pred             Cc
Q psy13780         86 GS   87 (100)
Q Consensus        86 ~~   87 (100)
                      +.
T Consensus        78 ~~   79 (432)
T cd07078          78 GE   79 (432)
T ss_pred             Cc
Confidence            44

The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer

>KOG2453|consensus

Probab=99.23  E-value=3e-11  Score=83.13  Aligned_cols=94  Identities=24%  Similarity=0.463  Sum_probs=88.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|.+.++..+++|++   .|...|...|.++.+++.|.|+...+.|-.+++.||||...+...||...++.|+|....
T Consensus        53 sv~dye~~~k~a~ea~k---iw~~vpapkrgeivrqigdalr~klq~lg~lvslemgkilaegvgevqeyvdicdyavgl  129 (507)
T KOG2453|consen   53 SVQDYEIAIKEAKEAYK---IWCEVPAPKRGEIVRQIGDALRTKLQNLGKLVSLEMGKILAEGVGEVQEYVDICDYAVGL  129 (507)
T ss_pred             cHHHHHHHHHHHHHHHH---HHhcCCCCccchHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhcchhHHHHHHHHHHhhhh
Confidence            45789999999999999   999999999999999999999999999999999999999999989999999999999999


Q ss_pred             hhhhcCcccCCCCCCcc
Q psy13780         81 CDKIEGSTIPSESKDNI   97 (100)
Q Consensus        81 ~~~~~~~~~~~~~~~~~   97 (100)
                      .+.+.+...|+..++|.
T Consensus       130 sr~l~g~i~pserpgha  146 (507)
T KOG2453|consen  130 SRSLEGKIFPSERPGHA  146 (507)
T ss_pred             hhhhCCcccCCCCCchh
Confidence            99999998888877764

>KOG2455|consensus

Probab=99.23  E-value=1.6e-10  Score=81.67  Aligned_cols=87  Identities=25%  Similarity=0.308  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHcCCChHHHHhh-HHHHHHHHHHHHh
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELID-KNVDYLASLETLDNGKPYEDSIFD-LGCASDTFRYFAG   79 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~-~~~~~l~~~~~~e~Gk~~~~a~~e-v~~~~~~~~~~a~   79 (100)
                      ..+|+.||++|.+|++   .|..+|..+|.+++.+.+++|. +++-+|....+.-.||++.+|..+ +...++++|+++.
T Consensus        95 ~k~ie~AIkaAl~a~~---~W~~~PiadR~aI~lkAAdlistkyr~~l~aatMlgqgKt~~qAeiDa~~eLidf~R~na~  171 (561)
T KOG2455|consen   95 KKQIEKAIKAALSAQK---TWELVPIADRLAIFLKAADLISTKYRYDLLAATMLGQGKTAIQAEIDAAAELIDFFRFNAK  171 (561)
T ss_pred             HHHHHHHHHHHHhhcC---ccccCcHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhHH
Confidence            5789999999999999   9999999999999999999999 889999989999999999999885 8899999999999


Q ss_pred             chhhhcCcccCC
Q psy13780         80 WCDKIEGSTIPS   91 (100)
Q Consensus        80 ~~~~~~~~~~~~   91 (100)
                      ++.++...++..
T Consensus       172 ya~eL~~~qpi~  183 (561)
T KOG2455|consen  172 YASELYAQQPIS  183 (561)
T ss_pred             HHHHhhhcCCcc
Confidence            998887665444

>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily

Probab=99.22  E-value=1.2e-10  Score=81.27  Aligned_cols=73  Identities=44%  Similarity=0.762  Sum_probs=68.8

Q ss_pred             HHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhhhcC
Q psy13780         11 SAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEG   86 (100)
Q Consensus        11 ~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~   86 (100)
                      +|+.+|.   .|+.++..+|.++|.++++.|.++.++|+.+++.|+|||+.++..|+..+++.+++++..+..+.+
T Consensus         2 ~a~~a~~---~w~~~~~~~R~~~l~~l~~~l~~~~~~l~~~~~~e~Gk~~~~~~~ev~~~~~~l~~~~~~~~~~~~   74 (367)
T cd06534           2 AARAAFK---AWAALPPAERAAILRKIADLLEERREELAALETLETGKPIEEALGEVARAIDTFRYAAGLADKLGG   74 (367)
T ss_pred             hHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5788999   999999999999999999999999999999999999999999999999999999999998877654

The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri

>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating)

Probab=99.22  E-value=1.4e-10  Score=83.92  Aligned_cols=76  Identities=17%  Similarity=0.073  Sum_probs=64.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.++++|+.||+   .|+.+|.++|.++|.+++++|.+++++|++++..|+|||..+... +.......+.+++.
T Consensus         6 ~~~~v~~av~~A~~A~~---~w~~~s~~~R~~iL~~~a~~l~~~~~ela~~~~~E~Gk~~~~~~~~~~~~~~~~~~~~~~   82 (488)
T TIGR02518         6 SIQQVRNLIRSAKVAQK---KLANMTQEQIDKIVKAIVDAAYENAVKLAKMANEETGFGKWEDKVIKNVFAATIVYDSIK   82 (488)
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHh
Confidence            46789999999999999   999999999999999999999999999999999999999887654 23334455555544

>PRK15398 aldehyde dehydrogenase EutE; Provisional

Probab=99.21  E-value=9e-11  Score=84.53  Aligned_cols=61  Identities=25%  Similarity=0.268  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF   65 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~   65 (100)
                      .+||+.+++.|+.||.   .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++..
T Consensus        35 ~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~la~~l~~~~~ela~~~~~E~Gk~~~ea~~   95 (465)
T PRK15398         35 FASVDDAVAAAKVAQQ---RYQQKSLAMRQRIIDAIREALLPHAEELAELAVEETGMGRVEDKI   95 (465)
T ss_pred             HHHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHH
Confidence            4789999999999999   999999999999999999999999999999999999999988764

>TIGR00407 proA gamma-glutamyl phosphate reductase

Probab=99.19  E-value=5e-11  Score=84.41  Aligned_cols=70  Identities=16%  Similarity=0.148  Sum_probs=62.9

Q ss_pred             HHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHcCCCh------HHHHhhHHHHHHHHHHHHh
Q psy13780         12 AKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASL------ETLDNGKPY------EDSIFDLGCASDTFRYFAG   79 (100)
Q Consensus        12 a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~------~~~e~Gk~~------~~a~~ev~~~~~~~~~~a~   79 (100)
                      |++||+   .|+++|..+|.++|.+++++|++|+++|+.+      ++.|+|||.      .++..|+..++..+++++.
T Consensus         1 a~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~a~~~E~Gk~~~~~~~l~~a~~ev~~~~~~~~~~a~   77 (398)
T TIGR00407         1 AKQAAN---ILAQLSTAEKNDALSKIADGLEAQAPAILAANAKDIAVAKENGLADALLDRLLLTEGRLKGIADGVKDVIE   77 (398)
T ss_pred             ChhHHH---HHHhCCHHHHHHHHHHHHHHHHhChHHHHHHhHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            578899   9999999999999999999999999999999      999999994      2356689999999999998


Q ss_pred             chhhh
Q psy13780         80 WCDKI   84 (100)
Q Consensus        80 ~~~~~   84 (100)
                      .+..+
T Consensus        78 ~a~~~   82 (398)
T TIGR00407        78 LADPV   82 (398)
T ss_pred             CCCCC
Confidence            87654

The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif.

>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19

Probab=99.07  E-value=3.8e-10  Score=80.11  Aligned_cols=73  Identities=18%  Similarity=0.249  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChH----HHH--------hhHHHHHHHH
Q psy13780          7 KAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE----DSI--------FDLGCASDTF   74 (100)
Q Consensus         7 ~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~----~a~--------~ev~~~~~~~   74 (100)
                      ..+++|+.||.   .|+.+|..+|.++|.++++.|.+|+++|+.+++.|+||+..    ++.        .|+..+++.+
T Consensus         2 ~~~~~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~d~gk~~e~G~~~a~~~~l~~~~~ev~~~~~~~   78 (406)
T cd07079           2 ELAKRAKAASR---ALATLSTEQKNAALLAIADALEANRDEILEANAKDLAAAREAGLSEALLDRLLLTPERIEAMAEGL   78 (406)
T ss_pred             hHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHhchHHHHHHhhhhHHHHHHcCCCHHHHhHhcCCHHHHHHHHHHH
Confidence            46788999999   99999999999999999999999999999999777766643    332        4899999999


Q ss_pred             HHHHhchh
Q psy13780         75 RYFAGWCD   82 (100)
Q Consensus        75 ~~~a~~~~   82 (100)
                      ++++....
T Consensus        79 ~~~a~~~~   86 (406)
T cd07079          79 RQVAALPD   86 (406)
T ss_pred             HHHHhcCC
Confidence            99987643

Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).

>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family

Probab=99.05  E-value=4.1e-10  Score=79.59  Aligned_cols=71  Identities=24%  Similarity=0.123  Sum_probs=61.8

Q ss_pred             HHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-----------hhHHHHHHHHHHHHh
Q psy13780         11 SAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI-----------FDLGCASDTFRYFAG   79 (100)
Q Consensus        11 ~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~-----------~ev~~~~~~~~~~a~   79 (100)
                      +|+.||+   .|+.+|..+|.++|++++++|++|+++|+++++.|+|||+....           .|+...+..+++++.
T Consensus         2 ~A~~a~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~~~~~~~~~~~~~~~ev~~~~~~~~~~a~   78 (397)
T cd07077           2 SAKNAQR---TLAVNHDEQRDLIINAIANALYDTRQRLASEAVSERGAYIRSLIANWIAMMGCSESKLYKNIDTERGITA   78 (397)
T ss_pred             hHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            6889999   99999999999999999999999999999999999999965432           378889999999987


Q ss_pred             chhhh
Q psy13780         80 WCDKI   84 (100)
Q Consensus        80 ~~~~~   84 (100)
                      ...+.
T Consensus        79 ~~~~~   83 (397)
T cd07077          79 SVGHI   83 (397)
T ss_pred             hcCcc
Confidence            54443

The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.

>KOG2454|consensus

Probab=99.03  E-value=5e-10  Score=78.44  Aligned_cols=85  Identities=20%  Similarity=0.267  Sum_probs=79.7

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      ++.||++-|..|++|++   .|...+...|++.|+.+.++|.+|.|.+++..++|+||++.++.. |+..+..-+.|...
T Consensus        84 ~~tdide~v~la~kAQk---tW~~ssF~~Rr~fL~~L~~yIi~nQdliaevacrDtGKTmvDAs~GEIlvTlEKI~Wtl~  160 (583)
T KOG2454|consen   84 SPTDIDERVTLARKAQK---TWAQSSFKLRRQFLRILLKYIIENQDLIAEVACRDTGKTMVDASLGEILVTLEKITWTLS  160 (583)
T ss_pred             ChhhHHHHHHHHHHHHh---hhhhccHHHHHHHHHHHHHHHhhchhheeeeeecccCchhhhhhHhHHHHHHHHhhhhhh
Confidence            46799999999999999   999999999999999999999999999999999999999999876 99999999999999


Q ss_pred             chhhhcCcc
Q psy13780         80 WCDKIEGST   88 (100)
Q Consensus        80 ~~~~~~~~~   88 (100)
                      +..+|..+.
T Consensus       161 ~Ger~L~P~  169 (583)
T KOG2454|consen  161 EGERWLKPE  169 (583)
T ss_pred             cchhhcCCc
Confidence            998887654

>KOG2456|consensus

Probab=99.02  E-value=7e-09  Score=72.92  Aligned_cols=85  Identities=18%  Similarity=0.157  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchh
Q psy13780          4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCD   82 (100)
Q Consensus         4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~   82 (100)
                      .+...+..+|.+|.   ..+..|.+.|...|.++...+++|+++|.+++..|.+||..++.. |+......++|+.++++
T Consensus         3 ~~~~~v~~~R~~F~---sGrtr~~efR~~QL~~L~r~i~e~e~~i~~Al~~DL~k~~~es~~~Ev~~~~~~i~~~l~~L~   79 (477)
T KOG2456|consen    3 AISETVRRLRLAFS---SGRTRPLEFRKQQLEALYRMIQENEKEIIEALAADLHKPELESYLNEVGYVLNEIRYALENLP   79 (477)
T ss_pred             cHHHHHHHHHHHHh---cCCcCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhH
Confidence            35667899999999   778999999999999999999999999999999999999999987 99999999999999999


Q ss_pred             hhcCcccCC
Q psy13780         83 KIEGSTIPS   91 (100)
Q Consensus        83 ~~~~~~~~~   91 (100)
                      +|..+....
T Consensus        80 ~wv~~~~v~   88 (477)
T KOG2456|consen   80 EWVKPEPVK   88 (477)
T ss_pred             HhccccccC
Confidence            998765443

>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase

Probab=98.78  E-value=4.5e-08  Score=73.87  Aligned_cols=70  Identities=14%  Similarity=0.223  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh----------------hH
Q psy13780          4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF----------------DL   67 (100)
Q Consensus         4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~----------------ev   67 (100)
                      .+...+.+|++||+   .|+.+|.++|.++|.+++++|++|+++|+    .++||++.++..                |+
T Consensus       287 ~~~~~~~~A~~A~~---~w~~~~~~~R~~~L~~la~~l~~~~eei~----~e~gkdl~~a~~~~~~~~~~~el~~~~~ei  359 (715)
T TIGR01092       287 GERDMAVAARESSR---MLQALSSEQRKEILHDIADALEDNEDEIL----AENKKDVAAAQGAGYAASLVARLSMSPSKI  359 (715)
T ss_pred             HHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHhcCcchhHHHHHhCCHHHH
Confidence            47788999999999   99999999999999999999999999996    588888876654                36


Q ss_pred             HHHHHHHHHHHhc
Q psy13780         68 GCASDTFRYFAGW   80 (100)
Q Consensus        68 ~~~~~~~~~~a~~   80 (100)
                      ..++..++++++.
T Consensus       360 ~~~~~~l~~~a~~  372 (715)
T TIGR01092       360 SSLAISLRQLAAM  372 (715)
T ss_pred             HHHHHHHHHHhcC
Confidence            7788888888873

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.

>PRK10090 aldehyde dehydrogenase A; Provisional

Probab=98.58  E-value=2.6e-07  Score=65.80  Aligned_cols=54  Identities=22%  Similarity=0.394  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhchhhhcCc
Q psy13780         34 IYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWCDKIEGS   87 (100)
Q Consensus        34 L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~~~~~~~   87 (100)
                      |++++++|++|+++|+++++.|+|||..++..||..+++.++|++..+..+.+.
T Consensus         1 L~~~a~~l~~~~~el~~~~~~e~Gk~~~ea~~Ev~~~~~~~~~~a~~~~~~~~~   54 (409)
T PRK10090          1 LRKIAAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEWARRYEGE   54 (409)
T ss_pred             CHHHHHHHHHCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            578999999999999999999999999999889999999999999988766543

>KOG4165|consensus

Probab=95.32  E-value=0.045  Score=38.52  Aligned_cols=43  Identities=21%  Similarity=0.379  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780          5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLAS   50 (100)
Q Consensus         5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~   50 (100)
                      +++....||.+++   ....++.++|.++|..++++|..+..+|.+
T Consensus         2 ~e~~a~~aR~a~r---~LqaLs~e~R~~il~~iad~L~~~~~~I~~   44 (433)
T KOG4165|consen    2 VEEMAENAREAGR---ILQALSNEDRADILHHIADLLVDNEKEILA   44 (433)
T ss_pred             HHHHHHHHHHHhh---HHHhcChhhHHHHHHHHHHHHHhhHHHHHh
Confidence            4566778999998   889999999999999999999998877764

>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]

Probab=90.01  E-value=1.5  Score=31.80  Aligned_cols=49  Identities=12%  Similarity=0.224  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy13780          3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETL   54 (100)
Q Consensus         3 ~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~   54 (100)
                      .++......|+.|+.   ....++..+|-+.|.++++.|+.++++|.+.=..
T Consensus         3 ~~~~~~~~~Ak~A~~---~La~~st~~Kn~aL~a~A~~L~~~~~~IL~AN~~   51 (417)
T COG0014           3 SELEELGKRAKAASR---KLATLSTEEKNRALLAMADALEAARAEILAANAK   51 (417)
T ss_pred             hHHHHHHHHHHHHHH---HHhhcChhhHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            567778888999998   8899999999999999999999999988865433

>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins

Probab=86.14  E-value=0.9  Score=23.09  Aligned_cols=21  Identities=14%  Similarity=0.411  Sum_probs=18.4

Q ss_pred             ccccCCHHHHHHHHHHHHHHH
Q psy13780         21 VWRNLDASGRGKLIYKLAELI   41 (100)
Q Consensus        21 ~w~~~~~~~R~~~L~~~~~~l   41 (100)
                      .|..++.++|.++|.++...+
T Consensus        29 ~W~~~s~~er~~i~~~l~~R~   49 (51)
T PF06945_consen   29 DWKSMSDDERRAILARLRARR   49 (51)
T ss_pred             HHhhCCHHHHHHHHHHHHHHh
Confidence            699999999999999887654

The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.

>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated

Probab=84.54  E-value=1.3  Score=23.37  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHH
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAEL   40 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~   40 (100)
                      .+|+..++..--.|..   .|..+|...|..++..+...
T Consensus         7 P~dl~~aL~~~p~a~~---~f~~l~~~~rr~~i~wi~~A   42 (63)
T PF13376_consen    7 PEDLEAALEANPEAKE---FFESLTPSYRREYIRWINSA   42 (63)
T ss_pred             CHHHHHHHHCCHHHHH---HHHHCCHHHHHHHHHHHHHc
Confidence            4688888888888888   89999999999998877643

>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins

Probab=83.54  E-value=3.7  Score=21.15  Aligned_cols=28  Identities=14%  Similarity=0.230  Sum_probs=24.2

Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHhHHHH
Q psy13780         21 VWRNLDASGRGKLIYKLAELIDKNVDYL   48 (100)
Q Consensus        21 ~w~~~~~~~R~~~L~~~~~~l~~~~~~l   48 (100)
                      .|..+|.++|..+.........++..++
T Consensus        38 ~W~~ls~~eK~~y~~~a~~~~~~y~~e~   65 (66)
T cd01390          38 KWKELSEEEKKKYEEKAEKDKERYEKEM   65 (66)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            7999999999999999888887777654

These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.

>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins

Probab=80.49  E-value=6.1  Score=21.16  Aligned_cols=37  Identities=11%  Similarity=0.137  Sum_probs=27.5

Q ss_pred             HHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Q psy13780         11 SAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLAS   50 (100)
Q Consensus        11 ~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~   50 (100)
                      ....+-.   .|..||.++|..+-.+....=..+..++..
T Consensus        35 ~~k~~~~---~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~   71 (73)
T PF09011_consen   35 VMKEISE---RWKSLSEEEKEPYEERAKEDKERYEREMKE   71 (73)
T ss_dssp             HHHHHHH---HHHHS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444556   899999999999999888777776666643

It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
1cw3_A	494	Human Mitochondrial Aldehyde Dehydrogenase Complexe		6e-24
1ag8_A	499	Aldehyde Dehydrogenase From Bovine Mitochondria Len		6e-24
2onn_A	500	Arg475gln Mutant Of Human Mitochondrial Aldehyde De		6e-24
3n81_A	500	T244a Mutant Of Human Mitochondrial Aldehyde Dehydr		6e-24
3n80_A	500	Human Mitochondrial Aldehyde Dehydrogenase, Apo For		6e-24
1o05_A	500	Apo Form Of Human Mitochondrial Aldehyde Dehydrogen		7e-24
1nzw_A	500	Cys302ser Mutant Of Human Mitochondrial Aldehyde De		7e-24
4fr8_A	500	Crystal Structure Of Human Aldehyde Dehydrogenase-2		7e-24
1zum_A	500	Human Mitochondrial Aldehyde Dehydrogenase Asian Va		7e-24
3inl_A	500	Human Mitochondrial Aldehyde Dehydrogenase Asian Va		7e-24
1bi9_A	499	Retinal Dehydrogenase Type Two With Nad Bound Lengt		8e-22
1o9j_A	501	The X-Ray Crystal Structure Of Eta-Crystallin Lengt		1e-20
1bxs_A	501	Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad		3e-20
3rhm_A	517	Crystal Structure Of The E673q Mutant Of C-Terminal		8e-20
3rhj_A	517	Crystal Structure Of The E673a Mutant Of The C-Term		8e-20
2o2p_A	517	Crystal Structure Of The C-Terminal Domain Of Rat 1		8e-20
3rhr_A	517	Crystal Structure Of The C707a Mutant Of The C-Term		9e-20
3rhl_A	517	Crystal Structure Of The E673aC707A DOUBLE MUTANT O		9e-20
4gnz_A	517	Crystal Structure Of The C707s Mutant Of C-terminal		9e-20
3ed6_A	520	1.7 Angstrom Resolution Crystal Structure Of Betain		2e-10
4a0m_A	496	Crystal Structure Of Betaine Aldehyde Dehydrogenase		1e-09
2wme_A	490	Crystallographic Structure Of Betaine Aldehyde Dehy		2e-09
2wme_C	490	Crystallographic Structure Of Betaine Aldehyde Dehy		2e-09
2wox_A	489	Betaine Aldehyde Dehydrogenase From Pseudomonas Aer		2e-09
3zqa_A	490	Crystallographic Structure Of Betaine Aldehyde Dehy		2e-09
2xdr_A	489	Crystallographic Structure Of Betaine Aldehyde Dehy		2e-09
3r31_A	517	Crystal Structure Of Betaine Aldehyde Dehydrogenase		4e-08
1a4s_A	503	Betaine Aldehyde Dehydrogenase From Cod Liver Lengt		1e-07
3iwk_A	503	Crystal Structure Of Aminoaldehyde Dehydrogenase 1		3e-07
2d4e_A	515	Crystal Structure Of The Hpcc From Thermus Thermoph		4e-07
3iwj_A	503	Crystal Structure Of Aminoaldehyde Dehydrogenase 2		5e-06
4i9b_A	517	Structure Of Aminoaldehyde Dehydrogenase 1 From Sol		1e-05
4i8q_A	514	Structure Of The Aminoaldehyde Dehydrogenase 1 E260		1e-05
1t90_A	486	Crystal Structure Of Methylmalonate Semialdehyde De		2e-05
3u4j_A	528	Crystal Structure Of Nad-Dependent Aldehyde Dehydro		2e-05
3jz4_C	481	Crystal Structure Of E. Coli Nadp Dependent Enzyme		2e-05
3jz4_A	481	Crystal Structure Of E. Coli Nadp Dependent Enzyme		2e-05
2jg7_A	510	Crystal Structure Of Seabream Antiquitin And Elucid		2e-05
4dal_A	498	Crystal Structure Of Putative Aldehyde Dehydrogenas		5e-05
2j6l_A	500	Structure Of Aminoadipate-Semialdehyde Dehydrogenas		8e-05
4i8p_A	520	Crystal Structure Of Aminoaldehyde Dehydrogenase 1a		1e-04
1uxn_A	501	Structural Basis For Allosteric Regulation And Subs		3e-04
1uxv_A	501	Structural Basis For Allosteric Regulation And Subs		3e-04
1ky8_A	501	Crystal Structure Of The Non-Phosphorylating Glycer		3e-04
3qan_A	538	Crystal Structure Of 1-Pyrroline-5-Carboxylate Dehy		4e-04

>pdb|1CW3|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With Nad+ And Mn2+ Length = 494

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  S
Sbjct: 52  DVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVIS 111
Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL       RY+AGW DK  G TIP
Sbjct: 112 YLVDLDMVLKCLRYYAGWADKYHGKTIP 139

>pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria Length = 499

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD+AV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  
Sbjct: 56  ADVDRAVKAARAAFQLGSPWRRMDASERGRLLNRLADLIERDRTYLAALETLDNGKPYII 115
Query: 63  S-IFDLGCASDTFRYFAGWCDKIEGSTIP 90
           S + DL       RY+AGW DK  G TIP
Sbjct: 116 SYLVDLDMVLKCLRYYAGWADKYHGKTIP 144

>pdb|2ONN|A Chain A, Arg475gln Mutant Of Human Mitochondrial Aldehyde Dehydrogenase, Apo Form Length = 500

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  S
Sbjct: 58  DVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVIS 117
Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL       RY+AGW DK  G TIP
Sbjct: 118 YLVDLDMVLKCLRYYAGWADKYHGKTIP 145

>pdb|3N81|A Chain A, T244a Mutant Of Human Mitochondrial Aldehyde Dehydrogenase, Apo Form Length = 500

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  S
Sbjct: 58  DVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVIS 117
Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL       RY+AGW DK  G TIP
Sbjct: 118 YLVDLDMVLKCLRYYAGWADKYHGKTIP 145

>pdb|3N80|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form Length = 500

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  S
Sbjct: 58  DVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVIS 117
Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL       RY+AGW DK  G TIP
Sbjct: 118 YLVDLDMVLKCLRYYAGWADKYHGKTIP 145

>pdb|1O05|A Chain A, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase Length = 500

Iteration: 1
 Score =  105 bits (262), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  S
Sbjct: 58  DVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVIS 117
Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL       RY+AGW DK  G TIP
Sbjct: 118 YLVDLDMVLKCLRYYAGWADKYHGKTIP 145

>pdb|1NZW|A Chain A, Cys302ser Mutant Of Human Mitochondrial Aldehyde Dehydrogenase Complexed With Nadh And Mg2+ Length = 500

Iteration: 1
 Score =  105 bits (262), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  S
Sbjct: 58  DVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVIS 117
Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL       RY+AGW DK  G TIP
Sbjct: 118 YLVDLDMVLKCLRYYAGWADKYHGKTIP 145

>pdb|4FR8|A Chain A, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In Complex With Nitroglycerin Length = 500

Iteration: 1
 Score =  105 bits (262), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  S
Sbjct: 58  DVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVIS 117
Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL       RY+AGW DK  G TIP
Sbjct: 118 YLVDLDMVLKCLRYYAGWADKYHGKTIP 145

>pdb|1ZUM|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant, Aldh22, Apo Form Length = 500

Iteration: 1
 Score =  105 bits (262), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  S
Sbjct: 58  DVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVIS 117
Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL       RY+AGW DK  G TIP
Sbjct: 118 YLVDLDMVLKCLRYYAGWADKYHGKTIP 145

>pdb|3INL|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant, Aldh22, Complexed With Agonist Alda-1 Length = 500

Iteration: 1
 Score =  105 bits (261), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  S
Sbjct: 58  DVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVIS 117
Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL       RY+AGW DK  G TIP
Sbjct: 118 YLVDLDMVLKCLRYYAGWADKYHGKTIP 145

>pdb|1BI9|A Chain A, Retinal Dehydrogenase Type Two With Nad Bound Length = 499

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/88 (51%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           D+DKAV++A+ AF  GSVWR +DAS RG+L+ KLA+L++++   LA++E+L+ GKP+  +
Sbjct: 57  DIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQA 116
Query: 64  IF-DLGCASDTFRYFAGWCDKIEGSTIP 90
            + DL     T RY+AGW DKI G TIP
Sbjct: 117 FYIDLQGVIKTLRYYAGWADKIHGMTIP 144

>pdb|1O9J|A Chain A, The X-Ray Crystal Structure Of Eta-Crystallin Length = 501

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/92 (50%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+ AF+ GS WR +DAS RG+LIYKLA+LI+++   LA+LE+++ GK +  +
Sbjct: 59  DVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKVFASA 118
Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
            + DL       RY AGW DKI+G TIP + +
Sbjct: 119 YLMDLDYCIKALRYCAGWADKIQGRTIPVDGE 150

>pdb|1BXS|A Chain A, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound Length = 501

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVDKAV++A+ AF+ GS WR +DAS RG+L+ KLA+LI+++   LA++E ++ GK + ++
Sbjct: 59  DVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNA 118
Query: 64  -IFDLGCASDTFRYFAGWCDKIEGSTIP 90
            + DLG    T RY AGW DKI+G TIP
Sbjct: 119 YLMDLGGCIKTLRYCAGWADKIQGRTIP 146

>pdb|3RHM|A Chain A, Crystal Structure Of The E673q Mutant Of C-Terminal Domain Of 10'formyltetrahydrofolate Dehydrogenase Length = 517

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           +DVDKAV +AK AF+ G +W  ++A  RG+L+Y+LA++++++ + LA++E LD G  Y  
Sbjct: 74  SDVDKAVAAAKEAFENG-LWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTL 132
Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGSTIP 90
           ++   +G +  TFRYFAGWCDKI+G+TIP
Sbjct: 133 ALKTHVGMSIQTFRYFAGWCDKIQGATIP 161

>pdb|3RHJ|A Chain A, Crystal Structure Of The E673a Mutant Of The C-Terminal Domain Of Rat 10'formyltetrahydrofolate Dehydrogenase In Complex With Co-Purified Nadp Length = 517

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           +DVDKAV +AK AF+ G +W  ++A  RG+L+Y+LA++++++ + LA++E LD G  Y  
Sbjct: 74  SDVDKAVAAAKEAFENG-LWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTL 132
Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGSTIP 90
           ++   +G +  TFRYFAGWCDKI+G+TIP
Sbjct: 133 ALKTHVGMSIQTFRYFAGWCDKIQGATIP 161

>pdb|2O2P|A Chain A, Crystal Structure Of The C-Terminal Domain Of Rat 10'formyltetrahydrofolate Dehydrogenase Length = 517

Iteration: 1
 Score = 91.7 bits (226), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           +DVDKAV +AK AF+ G +W  ++A  RG+L+Y+LA++++++ + LA++E LD G  Y  
Sbjct: 74  SDVDKAVAAAKEAFENG-LWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTL 132
Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGSTIP 90
           ++   +G +  TFRYFAGWCDKI+G+TIP
Sbjct: 133 ALKTHVGMSIQTFRYFAGWCDKIQGATIP 161

>pdb|3RHR|A Chain A, Crystal Structure Of The C707a Mutant Of The C-Terminal Domain Of 10'formyltetrahydrofolate Dehydrogenase In Complex With Nadph Length = 517

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           +DVDKAV +AK AF+ G +W  ++A  RG+L+Y+LA++++++ + LA++E LD G  Y  
Sbjct: 74  SDVDKAVAAAKEAFENG-LWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTL 132
Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGSTIP 90
           ++   +G +  TFRYFAGWCDKI+G+TIP
Sbjct: 133 ALKTHVGMSIQTFRYFAGWCDKIQGATIP 161

>pdb|3RHL|A Chain A, Crystal Structure Of The E673aC707A DOUBLE MUTANT OF THE C-Terminal Domain Of Rat 10'formyltetrahydrofolate Dehydrogenase In Complex With Co-Purified Nadp Length = 517

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           +DVDKAV +AK AF+ G +W  ++A  RG+L+Y+LA++++++ + LA++E LD G  Y  
Sbjct: 74  SDVDKAVAAAKEAFENG-LWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTL 132
Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGSTIP 90
           ++   +G +  TFRYFAGWCDKI+G+TIP
Sbjct: 133 ALKTHVGMSIQTFRYFAGWCDKIQGATIP 161

>pdb|4GNZ|A Chain A, Crystal Structure Of The C707s Mutant Of C-terminal Domain Of 10'formyltetrahydrofolate Dehydrogenase In Complex With Nadp Length = 517

Iteration: 1
 Score = 91.7 bits (226), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 67/89 (75%), Gaps = 2/89 (2%)
Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           +DVDKAV +AK AF+ G +W  ++A  RG+L+Y+LA++++++ + LA++E LD G  Y  
Sbjct: 74  SDVDKAVAAAKEAFENG-LWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTL 132
Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGSTIP 90
           ++   +G +  TFRYFAGWCDKI+G+TIP
Sbjct: 133 ALKTHVGMSIQTFRYFAGWCDKIQGATIP 161

>pdb|3ED6|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Betaine Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus Length = 520

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           D ++A+ +A+ AF+ G  W    A  RGK +  +A+ I ++ + LA LETLD GK  E+S
Sbjct: 71  DAERAILAARRAFESGE-WSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEES 129
Query: 64  IFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
             D+    + F YFAG  DK  G  I S   D
Sbjct: 130 YADMDDIHNVFMYFAGLADKDGGEMIDSPIPD 161

>pdb|4A0M|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From Spinach In Complex With Nad Length = 496

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DV+ AV +A+ AF+R + W     + R   +  +A  I +  D+   LET+D+GKP++++
Sbjct: 46  DVEVAVVAARRAFRRNN-WSATSGAHRATYLRAIAAKITEKKDHFVKLETIDSGKPFDEA 104
Query: 64  IFDLGCASDTFRYFAGWCDKIEGS-----TIPSE 92
           + D+   +  F YFAG  + ++G      T+P E
Sbjct: 105 VLDIDDVASCFEYFAGQAEALDGKQKAPVTLPME 138

>pdb|2WME|A Chain A, Crystallographic Structure Of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa Length = 490

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-ED 62
           DV++AV+SA    K   VW  + A  R +++ +  +++ +  D LA+LETLD GKP  E 
Sbjct: 45  DVERAVQSAVEGQK---VWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAET 101
Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIP 90
              D+   +D   Y+AG    IEG  IP
Sbjct: 102 RSVDIVTGADVLEYYAGLVPAIEGEQIP 129

>pdb|2WME|C Chain C, Crystallographic Structure Of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa Length = 490

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-ED 62
           DV++AV+SA    K   VW  + A  R +++ +  +++ +  D LA+LETLD GKP  E 
Sbjct: 45  DVERAVQSAVEGQK---VWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAET 101
Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIP 90
              D+   +D   Y+AG    IEG  IP
Sbjct: 102 RSVDIVTGADVLEYYAGLVPAIEGEQIP 129

>pdb|2WOX|A Chain A, Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa With Nad(P)h-Catalytic Thiol Adduct. Length = 489

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-ED 62
           DV++AV+SA    K   VW  + A  R +++ +  +++ +  D LA+LETLD GKP  E 
Sbjct: 44  DVERAVQSAVEGQK---VWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAET 100
Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIP 90
              D+   +D   Y+AG    IEG  IP
Sbjct: 101 RSVDIVTGADVLEYYAGLVPAIEGEQIP 128

>pdb|3ZQA|A Chain A, Crystallographic Structure Of Betaine Aldehyde Dehydrogenase Mutant C286a From Pseudomonas Aeruginosa In Complex With Nadph Length = 490

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-ED 62
           DV++AV+SA    K   VW  + A  R +++ +  +++ +  D LA+LETLD GKP  E 
Sbjct: 45  DVERAVQSAVEGQK---VWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAET 101
Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIP 90
              D+   +D   Y+AG    IEG  IP
Sbjct: 102 RSVDIVTGADVLEYYAGLVPAIEGEQIP 129

>pdb|2XDR|A Chain A, Crystallographic Structure Of Betaine Aldehyde Dehydrogenase Mutant E252a From Pseudomonas Aeruginosa Length = 489

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-ED 62
           DV++AV+SA    K   VW  + A  R +++ +  +++ +  D LA+LETLD GKP  E 
Sbjct: 44  DVERAVQSAVEGQK---VWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAET 100
Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIP 90
              D+   +D   Y+AG    IEG  IP
Sbjct: 101 RSVDIVTGADVLEYYAGLVPAIEGEQIP 128

>pdb|3R31|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From Agrobacterium Tumefaciens Length = 517

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A V++A+ SAK A K    W  +    RG+++ + A+++ +  D L++LETLD GKP ++
Sbjct: 52  AIVERAIASAKRAQKE---WAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQE 108
Query: 63  SIF-DLGCASDTFRYFAGWC-DKIEGSTIP 90
           +I  D    +D F +F G     + G  IP
Sbjct: 109 TIVADPTSGADAFEFFGGIAPSALNGDYIP 138

>pdb|1A4S|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver Length = 503

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           + +VD+AV+SA+AA+ +   W  +    R +++ + A +I +  D +A LE ++NGK   
Sbjct: 57  AEEVDQAVQSAQAAYLK---WSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTIT 113
Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTI 89
           ++ +D+  A     Y+AG    + G  I
Sbjct: 114 EAEYDIDAAWQCIEYYAGLAPTLSGQHI 141

>pdb|3IWK|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From Pisum Sativum (Psamadh1) Length = 503

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 4   DVDKAVESAKAAFKR--GSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           DVD AV++AK A  R  G  W     S R + +  +A  I +  D L  LE++D GKP E
Sbjct: 46  DVDLAVDAAKRAISRKNGRDWSAASGSLRARYLRAIAAKIKEKKDELGKLESIDCGKPLE 105
Query: 62  DSIFDLGCASDTFRYFAGWCDKIE 85
           +++ DL      F Y+AG  ++++
Sbjct: 106 EALADLDDVVACFEYYAGLAEELD 129

>pdb|2D4E|A Chain A, Crystal Structure Of The Hpcc From Thermus Thermophilus Hb8 Length = 515

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           +VD+A ++A  AF+R   W    A  R + + ++AELI+K+ D LA +E LD G+     
Sbjct: 65  EVDRAAKAAHEAFQR---WSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQVLRIV 121
Query: 64  IFDLGCASDTFRYFAGWCDK-IEGSTIP 90
              +  A++ F ++A + +  +E  T P
Sbjct: 122 RAQVARAAENFAFYAEYAEHAMEDRTFP 149

>pdb|3IWJ|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 2 From Pisum Sativum (Psamadh2) Length = 503

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 4   DVDKAVESAKAAFKR--GSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           DVD AV +AK A  R  G+ W     + R + +  +A  + +    LA LE++D GKP +
Sbjct: 46  DVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLD 105
Query: 62  DSIFDLGCASDTFRYFAGWCDKIEG 86
           ++ +D+   +  F Y+A   +K++ 
Sbjct: 106 EAAWDIDDVAGCFEYYADLAEKLDA 130

>pdb|4I9B|A Chain A, Structure Of Aminoaldehyde Dehydrogenase 1 From Solanum Lycopersium (slamadh1) With A Thiohemiacetal Intermediate Length = 517

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVD AVE+A+ A  R   W +   + R K +  +A  + +    LA+LE+LD+GK   +S
Sbjct: 62  DVDIAVEAARKAIARDD-WGSTTGAQRAKYLRAIAAKVLEKKSVLATLESLDSGKTLYES 120
Query: 64  IFDLGCASDTFRYFAGWCDKIE 85
             D+   +  F Y+AG  + ++
Sbjct: 121 AADMDDVAGCFEYYAGLAEALD 142

>pdb|4I8Q|A Chain A, Structure Of The Aminoaldehyde Dehydrogenase 1 E260a Mutant From Solanum Lycopersicum (slamadh1-e260a) Length = 514

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           DVD AVE+A+ A  R   W +   + R K +  +A  + +    LA+LE+LD+GK   +S
Sbjct: 62  DVDIAVEAARKAIARDD-WGSTTGAQRAKYLRAIAAKVLEKKSVLATLESLDSGKTLYES 120
Query: 64  IFDLGCASDTFRYFAGWCDKIE 85
             D+   +  F Y+AG  + ++
Sbjct: 121 AADMDDVAGCFEYYAGLAEALD 142

>pdb|1T90|A Chain A, Crystal Structure Of Methylmalonate Semialdehyde Dehydrogenase From Bacillus Subtilis Length = 486

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 4   DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
           D+D A ++A  AFK    W  +    R ++++   +L+ ++ + LA L T++NGK  +++
Sbjct: 44  DIDYAAQTAAEAFK---TWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEA 100
Query: 64  IFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           + ++G   +   + AG    + G ++ S + D
Sbjct: 101 LGEVGRGIENVEFAAGAPSLMMGDSLASIATD 132

>pdb|3U4J|A Chain A, Crystal Structure Of Nad-Dependent Aldehyde Dehydrogenase From Sinorhizobium Meliloti Length = 528

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 22  WRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWC 81
           W     + R +L +K+A+LI    + LA +E+L+ GKP   +  ++G  +D + Y AG  
Sbjct: 79  WPRXSGAERSRLXFKVADLILARQEELALIESLEVGKPIAQARGEIGFCADLWSYAAGQA 138
Query: 82  DKIEGSTIPSESKDNIG 98
             +EG T  +   D +G
Sbjct: 139 RALEGQTHNNIGDDRLG 155

>pdb|3JZ4|C Chain C, Crystal Structure Of E. Coli Nadp Dependent Enzyme Length = 481

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 1   MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60
           M AD  +A  +  AA +    WR L A  R  ++     L+ ++ D LA L TL+ GKP 
Sbjct: 44  MGADETRA--AIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPL 101
Query: 61  EDSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
            ++  ++  A+    +FA    +I G TIP    D
Sbjct: 102 AEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQAD 136

>pdb|3JZ4|A Chain A, Crystal Structure Of E. Coli Nadp Dependent Enzyme Length = 481

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 1   MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60
           M AD  +A  +  AA +    WR L A  R  ++     L+ ++ D LA L TL+ GKP 
Sbjct: 44  MGADETRA--AIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPL 101
Query: 61  EDSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
            ++  ++  A+    +FA    +I G TIP    D
Sbjct: 102 AEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQAD 136

>pdb|2JG7|A Chain A, Crystal Structure Of Seabream Antiquitin And Elucidation Of Its Substrate Specificity Length = 510

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A+ ++ V+  + A+K   +W ++ A  RG+++ ++ + + K +  L SL +L+ GK Y +
Sbjct: 57  AEYEETVQKTREAWK---MWADIPAPKRGEIVRQIGDALRKKIKVLGSLVSLEMGKIYVE 113
Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
            + ++    D   Y  G    I G  +PSE
Sbjct: 114 GVGEVQEYVDVCDYAVGLSRMIGGPVLPSE 143

>pdb|4DAL|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 498

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A +D AV++A+ AF     W     + R   + K+A+ I+K  D  A+LE L+ GKP   
Sbjct: 62  AQIDAAVDAAERAFVG---WSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPINA 118
Query: 63  SIFD-LGCASDTFRYFAG 79
              D L    D +R+FAG
Sbjct: 119 VKNDELPAIIDCWRFFAG 136

>pdb|2J6L|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase Length = 500

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           AD ++ V+ A+ A+K   +W ++ A  RG+++ ++ + + + +  L SL +L+ GK   +
Sbjct: 59  ADYEETVKKAREAWK---IWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILVE 115
Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
            + ++    D   Y  G    I G  +PSE
Sbjct: 116 GVGEVQEYVDICDYAVGLSRMIGGPILPSE 145

>pdb|4I8P|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1a From Zea Mays (zmamadh1a) Length = 520

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 18  RGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYF 77
           RG  W     + R K +  +A  + +    LA LE LD GKPY+++ +D+   +  F YF
Sbjct: 79  RGRDWARAPGAVRAKYLRAIAAKVIERKPELAKLEALDCGKPYDEAAWDMDDVAGCFEYF 138
Query: 78  AGWCDKIE 85
           A   + ++
Sbjct: 139 ADQAEALD 146

>pdb|1UXN|A Chain A, Structural Basis For Allosteric Regulation And Substrate Specificity Of The Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax Length = 501

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 16  FKRGSVW--RNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDT 73
           FKRG  W  R++  + R  ++ K A++I++N+D  A +  ++ GKP   ++ ++  A D 
Sbjct: 64  FKRGR-WSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDR 122
Query: 74  FRYFAGWCDKIEGSTIPSE 92
            R       KI G  IP +
Sbjct: 123 LRLAELDLKKIGGDYIPGD 141

>pdb|1UXV|A Chain A, Structural Basis For Allosteric Regulation And Substrate Specificity Of The Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From Thermoproteus Tenax Length = 501

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 16  FKRGSVW--RNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDT 73
           FKRG  W  R++  + R  ++ K A++I++N+D  A +  ++ GKP   ++ ++  A D 
Sbjct: 64  FKRGR-WSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDR 122
Query: 74  FRYFAGWCDKIEGSTIPSE 92
            R       KI G  IP +
Sbjct: 123 LRLAELDLKKIGGDYIPGD 141

>pdb|1KY8|A Chain A, Crystal Structure Of The Non-Phosphorylating Glyceraldehyde-3- Phosphate Dehydrogenase Length = 501

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 16  FKRGSVW--RNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDT 73
           FKRG  W  R++  + R  ++ K A++I++N+D  A +  ++ GKP   ++ ++  A D 
Sbjct: 64  FKRGR-WSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDR 122
Query: 74  FRYFAGWCDKIEGSTIPSE 92
            R       KI G  IP +
Sbjct: 123 LRLAELDLKKIGGDYIPGD 141

>pdb|3QAN|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Dehydrogenase From Bacillus Halodurans Length = 538

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 6   DKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF 65
           +KA++SA  AF+    WRN++   R  ++ K A +I +     ++    + GKP++++  
Sbjct: 77  EKAIQSADEAFQ---TWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPWKEADA 133
Query: 66  DLGCASDTFRYFA 78
           D   A D   Y+A
Sbjct: 134 DTAEAIDFLEYYA 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
1bxs_A	501	Aldehyde dehydrogenase; retinal, class 1, tetramer	4e-45
1o04_A	500	Aldehyde dehydrogenase, mitochondrial precursor; A	5e-45
3u4j_A	528	NAD-dependent aldehyde dehydrogenase; PSI-biology,	3e-43
3ed6_A	520	Betaine aldehyde dehydrogenase; structural genomic	5e-43
2o2p_A	517	Formyltetrahydrofolate dehydrogenase; aldehyde deh	8e-43
1a4s_A	503	ALDH, betaine aldehyde dehydrogenase; oxidoreducta	6e-42
3iwj_A	503	Putative aminoaldehyde dehydrogenase; rossmann fol	4e-41
2ve5_A	490	BADH, betaine aldehyde dehydrogenase; aldehyde oxi	1e-40
1wnd_A	495	Putative betaine aldehyde dehydrogenase; NADH, flu	2e-39
3r31_A	517	BADH, betaine aldehyde dehydrogenase; structural g	3e-39
4f3x_A	498	Putative aldehyde dehydrogenase; structural genomi	4e-39
2d4e_A	515	5-carboxymethyl-2-hydroxymuconate semialdehyde deh	5e-39
1uzb_A	516	1-pyrroline-5-carboxylate dehydrogenase; oxidoredu	2e-34
3qan_A	538	1-pyrroline-5-carboxylate dehydrogenase 1; proline	5e-34
3r64_A	508	NAD dependent benzaldehyde dehydrogenase; structur	1e-30
3b4w_A	495	Aldehyde dehydrogenase; RV0223C-NAD complex, struc	8e-30
3i44_A	497	Aldehyde dehydrogenase; oxidoreductase, structural	1e-27
2y53_A	534	Aldehyde dehydrogenase (BOX pathway); oxidoreducta	4e-27
3pqa_A	486	Lactaldehyde dehydrogenase; structural genomics, p	1e-26
1uxt_A	501	Glyceraldehyde-3-phosphate dehydrogenase (NADP+);	2e-26
3prl_A	505	NADP-dependent glyceraldehyde-3-phosphate dehydro;	2e-25
3ty7_A	478	Putative aldehyde dehydrogenase SAV2122; structura	4e-25
3ju8_A	490	Succinylglutamic semialdehyde dehydrogenase; alpha	2e-24
1ez0_A	510	ALDH, aldehyde dehydrogenase; nucleotide binding d	5e-24
4f9i_A	1026	Proline dehydrogenase/delta-1-pyrroline-5-carboxy	2e-21
2j6l_A	500	Aldehyde dehydrogenase family 7 member A1; NAD, re	1e-20
2imp_A	479	Lactaldehyde dehydrogenase; protein-lactate-NADH t	3e-20
1euh_A	475	NADP dependent non phosphorylating glyceraldehyde-	3e-19
3my7_A	452	Alcohol dehydrogenase/acetaldehyde dehydrogenase;	1e-17
3haz_A	1001	Proline dehydrogenase; proline utilization A, PUTA	2e-16
4dng_A	485	Uncharacterized aldehyde dehydrogenase ALDY; struc	2e-16
3k2w_A	497	Betaine-aldehyde dehydrogenase; structural genomic	2e-16
3v4c_A	528	Aldehyde dehydrogenase (NADP+); structural genomic	8e-16
2w8n_A	487	Succinate-semialdehyde dehydrogenase, mitochondria	3e-15
3rh9_A	506	Succinate-semialdehyde dehydrogenase (NAD(P)(+));	3e-15
3ifg_A	484	Succinate-semialdehyde dehydrogenase (NADP+); niai	4e-15
3jz4_A	481	Succinate-semialdehyde dehydrogenase [NADP+]; tetr	4e-15
3ek1_A	504	Aldehyde dehydrogenase; ssgcid, oxidoreductase, st	5e-15
3k9d_A	464	LMO1179 protein, aldehyde dehydrogenase; structura	3e-14
3etf_A	462	Putative succinate-semialdehyde dehydrogenase; cen	1e-12
3ros_A	484	NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-	2e-12
1t90_A	486	MMSDH, probable methylmalonate-semialdehyde dehydr	3e-12
4e4g_A	521	Methylmalonate-semialdehyde dehydrogenase; structu	3e-12
4e3x_A	563	Delta-1-pyrroline-5-carboxylate dehydrogenase, mit	1e-08

>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A* Length = 501

 Score =  150 bits (381), Expect = 4e-45
 Identities = 45/93 (48%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            DVDKAV++A+ AF+ GS WR +DAS RG+L+ KLA+LI+++   LA++E ++ GK + +
Sbjct: 58  EDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSN 117

Query: 63  S-IFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
           + + DLG    T RY AGW DKI+G TIP +  
Sbjct: 118 AYLMDLGGCIKTLRYCAGWADKIQGRTIPMDGN 150

>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ... Length = 500

 Score =  150 bits (381), Expect = 5e-45
 Identities = 51/93 (54%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  
Sbjct: 57  EDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVI 116

Query: 63  S-IFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
           S + DL       RY+AGW DK  G TIP +  
Sbjct: 117 SYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGD 149

>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti} Length = 528

 Score =  146 bits (370), Expect = 3e-43
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            DV KAV +A+ AF  G  W  +  + R +L++K+A+LI    + LA +E+L+ GKP   
Sbjct: 61  DDVRKAVAAARKAFDAGP-WPRMSGAERSRLMFKVADLILARQEELALIESLEVGKPIAQ 119

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           +  ++G  +D + Y AG    +EG T  +   D
Sbjct: 120 ARGEIGFCADLWSYAAGQARALEGQTHNNIGDD 152

>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A* Length = 520

 Score =  145 bits (368), Expect = 5e-43
 Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            D ++A+ +A+ AF+ G  W    A  RGK +  +A+ I ++ + LA LETLD GK  E+
Sbjct: 70  EDAERAILAARRAFESGE-WSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEE 128

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           S  D+    + F YFAG  DK  G  I S   D
Sbjct: 129 SYADMDDIHNVFMYFAGLADKDGGEMIDSPIPD 161

>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A* Length = 517

 Score =  144 bits (366), Expect = 8e-43
 Identities = 43/89 (48%), Positives = 65/89 (73%), Gaps = 2/89 (2%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           +DVDKAV +AK AF+ G  W  ++A  RG+L+Y+LA++++++ + LA++E LD G  Y  
Sbjct: 74  SDVDKAVAAAKEAFENGL-WGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTL 132

Query: 63  S-IFDLGCASDTFRYFAGWCDKIEGSTIP 90
           +    +G +  TFRYFAGWCDKI+G+TIP
Sbjct: 133 ALKTHVGMSIQTFRYFAGWCDKIQGATIP 161

>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A* Length = 503

 Score =  142 bits (360), Expect = 6e-42
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +VD+AV+SA+AA+     W  +    R +++ + A +I +  D +A LE ++NGK   +
Sbjct: 58  EEVDQAVQSAQAAYL---KWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITE 114

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIP 90
           + +D+  A     Y+AG    + G  I 
Sbjct: 115 AEYDIDAAWQCIEYYAGLAPTLSGQHIQ 142

>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A* Length = 503

 Score =  139 bits (354), Expect = 4e-41
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 3   ADVDKAVESAKAAFKR--GSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY 60
            DVD AV +AK A  R  G+ W     + R + +  +A  + +    LA LE++D GKP 
Sbjct: 45  EDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPL 104

Query: 61  EDSIFDLGCASDTFRYFAGWCDKIEGSTIP 90
           +++ +D+   +  F Y+A   +K++     
Sbjct: 105 DEAAWDIDDVAGCFEYYADLAEKLDARQKA 134

>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A Length = 495

 Score =  135 bits (342), Expect = 2e-39
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
             VD AV +A AAF     W       R + + KLA++I++N    A LE+ + GKP   
Sbjct: 60  EQVDAAVRAADAAFA---EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHS 116

Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           +   ++    D FR+FAG    + G       + 
Sbjct: 117 AFNDEIPAIVDVFRFFAGAARCLNGLAAGEYLEG 150

>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens} Length = 517

 Score =  135 bits (342), Expect = 3e-39
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 5/94 (5%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A V++A+ SAK A K    W  +    RG+++ + A+++ +  D L++LETLD GKP ++
Sbjct: 52  AIVERAIASAKRAQK---EWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQE 108

Query: 63  S-IFDLGCASDTFRYFAGWC-DKIEGSTIPSESK 94
           + + D    +D F +F G     + G  IP    
Sbjct: 109 TIVADPTSGADAFEFFGGIAPSALNGDYIPLGGD 142

>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A* Length = 498

 Score =  134 bits (340), Expect = 4e-39
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A +D AV++A+ AF     W     + R   + K+A+ I+K  D  A+LE L+ GKP   
Sbjct: 62  AQIDAAVDAAERAFVG---WSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPINA 118

Query: 63  SI-FDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
               +L    D +R+FAG    +           
Sbjct: 119 VKNDELPAIIDCWRFFAGAVRNLHAPAAGEYLPG 152

>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus} Length = 515

 Score =  134 bits (340), Expect = 5e-39
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +VD+A ++A  AF+R   W    A  R + + ++AELI+K+ D LA +E LD G+    
Sbjct: 64  REVDRAAKAAHEAFQR---WSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQVLRI 120

Query: 63  SIFDLGCASDTFRYFAGWCDK-IEGSTIP 90
               +  A++ F ++A + +  +E  T P
Sbjct: 121 VRAQVARAAENFAFYAEYAEHAMEDRTFP 149

>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A* Length = 516

 Score =  122 bits (308), Expect = 2e-34
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A+ + A+E+A  AFK    W++     R +L+ K A L+ +    L +    + GK + +
Sbjct: 74  AEAEAALEAAWKAFKT---WKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVE 130

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGN 99
           +  D+  A D   Y+A    +     +         N
Sbjct: 131 ASADVAEAIDFIEYYARAALRYRYPAVEVVPYPGEDN 167

>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A Length = 538

 Score =  121 bits (305), Expect = 5e-34
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
              +KA++SA  AF+    WRN++   R  ++ K A +I +     ++    + GKP+++
Sbjct: 74  DLAEKAIQSADEAFQT---WRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPWKE 130

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           +  D   A D   Y+A    ++           
Sbjct: 131 ADADTAEAIDFLEYYARQMIELNRGKEILSRPG 163

>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum} Length = 508

 Score =  111 bits (281), Expect = 1e-30
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD A E+AK A      W    A+ R  +IY+ AEL++++ + +      ++G     
Sbjct: 50  ADVDAAYEAAKKAQA---EWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTRSK 106

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           +  ++  A +  +  A +  ++ G   PS +  
Sbjct: 107 ANLEITLAGNITKESASFPGRVHGRISPSNTPG 139

>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis} Length = 495

 Score =  109 bits (275), Expect = 8e-30
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVD AV +A+AAF  G  W +     R  +I    +++ +  D    L   + G+P   
Sbjct: 46  ADVDAAVAAARAAFDNGP-WPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPPTI 104

Query: 63  S-IFDLGCASDTFRYFAGWCDKIEGSTIP 90
                   +     YFAG  DK+  +   
Sbjct: 105 IETMHWMGSMGAMNYFAGAADKVTWTETR 133

>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae} Length = 497

 Score =  103 bits (259), Expect = 1e-27
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            D DKA+ +AK AF+    W+      R   + K+ E+ +K    +A   +++ G P + 
Sbjct: 63  RDADKAINAAKKAFQT---WKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPIDM 119

Query: 63  S-IFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
           +        S   R F     +        E  + 
Sbjct: 120 ALNAQTATGSSHIRNFIKAYKEFSFQEALIEGNEQ 154

>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A* Length = 534

 Score =  101 bits (255), Expect = 4e-27
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 3/90 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
                   + +         R L  + R   +  + +L+        ++ T ++G    D
Sbjct: 44  DLARAFSFAREDGGA---ALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTRND 100

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
           S  D+     T  Y+A     +       +
Sbjct: 101 SAVDIDGGIFTLSYYAKLGASLGEVHALRD 130

>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A* Length = 486

 Score =  100 bits (252), Expect = 1e-26
 Identities = 20/92 (21%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +  +A+++A+   +   V +NL  + R  ++  +A+ I +  + LA +  +D GKP + 
Sbjct: 34  EEAKEAIDTAEKYKE---VMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPIKQ 90

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESK 94
           +  ++  +  TF+  A +  +     IPS+ +
Sbjct: 91  ARVEVERSIGTFKLAAFYVKEHRDEVIPSDDR 122

>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A* Length = 501

 Score =   99 bits (250), Expect = 2e-26
 Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +V++ ++      +     R++  + R  ++ K A++I++N+D  A +  ++ GKP   
Sbjct: 54  EEVERTLDVLFKRGR--WSARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSA 111

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGNK 100
           ++ ++  A D  R       KI G  IP +   +    
Sbjct: 112 AVGEVKAAVDRLRLAELDLKKIGGDYIPGDWTYDTLET 149

>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A* Length = 505

 Score = 97.6 bits (244), Expect = 2e-25
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +V+ A++ AK A K   +W+      R  L+Y  A+L+++  + +  L   +  KP + 
Sbjct: 49  EEVNDAIQGAKDAQK---IWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKKS 105

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSES 93
           +I ++   +D  R+ A    ++ G T+  + 
Sbjct: 106 AIGEVSRTADIIRHTADEALRLNGETLKGDQ 136

>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus} Length = 478

 Score = 96.4 bits (241), Expect = 4e-25
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           ADVDKAVE+A   +     +R+     R  L+ K+ +  +   D +    T + G P   
Sbjct: 45  ADVDKAVEAADDVYLE---FRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPLSL 101

Query: 63  S-IFDLGCASDTFRYFAGWCDKIEGSTIPSES 93
           S         + F       D  E      + 
Sbjct: 102 SERVHYQMGLNHFVAARDALDNYEFEERRGDD 133

>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa} Length = 490

 Score = 94.2 bits (235), Expect = 2e-24
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
             VD AV +A+ AF     W       R +L+ + A  +    D LA +   + GKP  +
Sbjct: 42  TQVDAAVCAAREAFPA---WARRPLEQRIELLERFAATLKSRADELARVIGEETGKPLWE 98

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPS 91
           S  ++    +          +  G     
Sbjct: 99  SATEVTSMVNKVAISVQAFRERTGEKSGP 127

>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A* Length = 510

 Score = 93.5 bits (233), Expect = 5e-24
 Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +V++A  +A    +    +R L+ S R  L+  +A  ++   D + +   L+   P   
Sbjct: 30  VEVNQAATAAAKVAR---DFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEVR 86

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
              ++   ++  R FA   +         ++ +
Sbjct: 87  LTGEIARTANQLRLFADVVNSGSYHQAILDTPN 119

>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens} Length = 1026

 Score = 85.8 bits (213), Expect = 2e-21
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +V  A+ +AKAAF     WR+ D   R + + K A+   K +  L++ + L+ GK ++ 
Sbjct: 568 TEVGDAIAAAKAAFPA---WRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQWDQ 624

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
           +  D+  A D   Y+A    ++        +  
Sbjct: 625 AYADVTEAIDFLEYYAREMIRLGQPQRVGHAPG 657

>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A* Length = 500

 Score = 83.8 bits (208), Expect = 1e-20
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           AD ++ V+ A+ A+K    W ++ A  RG+++ ++ + + + +  L SL +L+ GK   +
Sbjct: 59  ADYEETVKKAREAWKI---WADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILVE 115

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKD 95
            + ++    D   Y  G    I G  +PSE   
Sbjct: 116 GVGEVQEYVDICDYAVGLSRMIGGPILPSERSG 148

>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A* Length = 479

 Score = 82.6 bits (205), Expect = 3e-20
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
           + D  KA+++A+ A      W  L A  R   + K++  I +    +++L   + GK  +
Sbjct: 43  AEDARKAIDAAERAQPE---WEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQ 99

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
            +  ++   +D   Y A W  + EG  I S+    
Sbjct: 100 LAEVEVAFTADYIDYMAEWARRYEGEIIQSDRPGE 134

>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A* Length = 475

 Score = 79.5 bits (197), Expect = 3e-19
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +VD    SAK A      WR L    R   ++K+A+++ ++ + + ++ + +  K Y+ 
Sbjct: 40  EEVDYVYASAKKAQPA---WRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKS 96

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSES 93
           ++ ++   ++   Y A    ++EG  +   S
Sbjct: 97  AVSEVVRTAEIINYAAEEGLRMEGEVLEGGS 127

>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus} Length = 452

 Score = 75.4 bits (186), Expect = 1e-17
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 3  ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP-YE 61
          A++D  +   K A +    +         K+    +   ++    LA     ++G    E
Sbjct: 7  AELDAMIARVKKAQE---EFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGIVE 63

Query: 62 DSIFDLGCASDTFRYFAGWCDKIEG 86
          D +     AS+ F Y     ++  G
Sbjct: 64 DKVIKNHFASE-FIYNKYKDEQTCG 87

>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110} Length = 1001

 Score = 72.1 bits (177), Expect = 2e-16
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
                AV +A+A F     W    A  R   + + A L++    +  +L   + GK  +D
Sbjct: 550 DQAHAAVAAARAGFAG---WSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDD 606

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGNK 100
           ++ +L  A+D  RY+A    K+ GS           N 
Sbjct: 607 ALSELREAADFCRYYAAQGRKLFGSETAMPGPTGESNA 644

>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis} Length = 485

 Score = 71.8 bits (177), Expect = 2e-16
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
             ++ A + A+ A K    W       R  ++ K    + +N D +  +   + G     
Sbjct: 44  KQLEDAFDIAQKAQKE---WAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIK 100

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGS-TIPSESKDN 96
           S  +L            +  ++ G   +PS+ +  
Sbjct: 101 STIELEQTIAILDEAMTYTGELGGVKEVPSDIEGK 135

>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C} Length = 497

 Score = 71.8 bits (177), Expect = 2e-16
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           AD + A+E A+AA K    W  L A  R  ++   A  I +N   LA +   + GK    
Sbjct: 50  ADAENALEVAQAAQKA---WAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLLSV 106

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
           +  ++   +    Y       IEG  +PS+++D 
Sbjct: 107 AEMEVDVTATFIDYGCDNALTIEGDILPSDNQDE 140

>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti} Length = 528

 Score = 70.1 bits (172), Expect = 8e-16
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
             V++A E+A+ AF     +       R   +  +A+ I+   + +  + + + G P   
Sbjct: 63  ELVNRACEAAEEAFW---TYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPEAR 119

Query: 63  SIFDLGCASDTFRYFAG------WCDKIEGSTIPS 91
              + G  +   R FA       + D+   + +P 
Sbjct: 120 LNGERGRTTGQLRLFADHIEKGDYLDRRVDAAMPE 154

>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A* Length = 487

 Score = 68.7 bits (169), Expect = 3e-15
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +   AV +A  AF R   WR + A  R  L+ K   L+ +N D LA + T ++GKP ++
Sbjct: 48  REARAAVRAAYEAFCR---WREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKE 104

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
           +  ++  ++    +F+    ++ G  I + +KD 
Sbjct: 105 AHGEILYSAFFLEWFSEEARRVYGDIIHTPAKDR 138

>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei} Length = 506

 Score = 68.4 bits (168), Expect = 3e-15
 Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
             DV  AVE+ ++A +            R K +  + + + +N + +  +  +++GKP++
Sbjct: 48  EEDVVAAVEAGQSALRL---TNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPWK 104

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
           ++  ++  A+  F Y A     ++  TIP + KD 
Sbjct: 105 EAQGEVDYAAGFFDYCAKHISALDSHTIPEKPKDC 139

>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q Length = 484

 Score = 67.9 bits (167), Expect = 4e-15
 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A+  +A+E+A+AA+     WR   A  R  ++ +  +L+  N D LA + T + GKP  +
Sbjct: 50  AETARAIEAAQAAWAG---WRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPLAE 106

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
           +  ++  A+    +FA    ++ G T+P+   + 
Sbjct: 107 AKGEIAYAASFIEWFAEEGKRVAGDTLPTPDANK 140

>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli} Length = 481

 Score = 67.9 bits (167), Expect = 4e-15
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +   A+++A  A      WR L A  R  ++     L+ ++ D LA L TL+ GKP  +
Sbjct: 47  DETRAAIDAANRALPA---WRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAE 103

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
           +  ++  A+    +FA    +I G TIP    D 
Sbjct: 104 AKGEISYAASFIEWFAEEGKRIYGDTIPGHQADK 137

>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308} Length = 504

 Score = 67.6 bits (166), Expect = 5e-15
 Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
            A + +A++++  A      W    A  R  ++ K  +LI  N D +A + T + GKP  
Sbjct: 69  VATIKEAIDASAKALSG---WAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPLA 125

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
           ++  ++  A+    +FA    ++ G TIP+     
Sbjct: 126 EARGEVLYAASFIEWFAEEAKRVYGDTIPAPQNGQ 160

>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes} Length = 464

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKP-YE 61
            +V   +ESA  A K       +       ++  +A+      + LA +   + G   ++
Sbjct: 12  QEVRNLIESANKAQK---ELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGIWQ 68

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIPSESKDN 96
           D +     AS    +   +   ++   +  E  + 
Sbjct: 69  DKVIKNVFASK---HVYNYIKDMKTIGMLKEDNEK 100

>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A Length = 462

 Score = 61.0 bits (149), Expect = 1e-12
 Identities = 12/76 (15%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +++ A+  A + FK+   W+    + R + +  + + +  + + +A   T + GKP + 
Sbjct: 29  QEIEHALSLAASGFKK---WKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQ 85

Query: 63  SIFDLGCASDTFRYFA 78
           +  ++  ++    ++A
Sbjct: 86  ARAEVTKSAALCDWYA 101

>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus} Length = 484

 Score = 60.6 bits (148), Expect = 2e-12
 Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 3  ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +D+A+  A A +K+   WR+ + + R ++++ +A  + ++ D LA + TL+ GK   +
Sbjct: 26 KQIDEAINLAHALYKK---WRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLSE 82

Query: 63 SIFDLGCASDTFRYFA 78
          S  ++        Y+A
Sbjct: 83 SKEEVELCVSICNYYA 98

>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis} Length = 486

 Score = 59.9 bits (146), Expect = 3e-12
 Identities = 17/66 (25%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
             D+D A ++A  AFK    W  +    R ++++   +L+ ++ + LA L T++NGK  +
Sbjct: 42  KEDIDYAAQTAAEAFKT---WSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTK 98

Query: 62  DSIFDL 67
           +++ ++
Sbjct: 99  EALGEV 104

>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti} Length = 521

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
            AD+  AVESAKAA  +   W   +   R ++  K  +L++ N++ LA + + ++GK  +
Sbjct: 63  DADLAAAVESAKAAQPK---WAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTID 119

Query: 62  DSIFDL 67
           D+  D+
Sbjct: 120 DAKGDI 125

>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A Length = 563

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELI-DKNVDYLASLETLDNGKPYE 61
           A +++A+++A AA K    W     + R ++  K A+++       + +   +  GK   
Sbjct: 100 ALLNRAIDAALAARKE---WDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTVI 156

Query: 62  DSIFDLGC-ASDTFRYFAGWCDKIEG 86
            +  D      D FR+ A +  ++EG
Sbjct: 157 QAEIDAAAELIDFFRFNAKFAVELEG 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
2wme_A	490	BADH, betaine aldehyde dehydrogenase; aldehyde oxi	99.71
3rh9_A	506	Succinate-semialdehyde dehydrogenase (NAD(P)(+));	99.67
3ifg_A	484	Succinate-semialdehyde dehydrogenase (NADP+); niai	99.67
3ed6_A	520	Betaine aldehyde dehydrogenase; structural genomic	99.66
3ros_A	484	NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-	99.66
3pqa_A	486	Lactaldehyde dehydrogenase; structural genomics, p	99.66
2imp_A	479	Lactaldehyde dehydrogenase; protein-lactate-NADH t	99.66
3ek1_A	504	Aldehyde dehydrogenase; ssgcid, oxidoreductase, st	99.65
1uzb_A	516	1-pyrroline-5-carboxylate dehydrogenase; oxidoredu	99.65
4f3x_A	498	Putative aldehyde dehydrogenase; structural genomi	99.65
1a4s_A	503	ALDH, betaine aldehyde dehydrogenase; oxidoreducta	99.65
3prl_A	505	NADP-dependent glyceraldehyde-3-phosphate dehydro;	99.65
3k2w_A	497	Betaine-aldehyde dehydrogenase; structural genomic	99.65
2w8n_A	487	Succinate-semialdehyde dehydrogenase, mitochondria	99.64
2d4e_A	515	5-carboxymethyl-2-hydroxymuconate semialdehyde deh	99.64
3u4j_A	528	NAD-dependent aldehyde dehydrogenase; PSI-biology,	99.64
2o2p_A	517	Formyltetrahydrofolate dehydrogenase; aldehyde deh	99.64
2j6l_A	500	Aldehyde dehydrogenase family 7 member A1; NAD, re	99.64
3qan_A	538	1-pyrroline-5-carboxylate dehydrogenase 1; proline	99.64
1wnd_A	495	Putative betaine aldehyde dehydrogenase; NADH, flu	99.63
1euh_A	475	NADP dependent non phosphorylating glyceraldehyde-	99.63
3lns_A	457	Benzaldehyde dehydrogenase; oxidoreductase, NADP+,	99.62
3jz4_A	481	Succinate-semialdehyde dehydrogenase [NADP+]; tetr	99.62
1ez0_A	510	ALDH, aldehyde dehydrogenase; nucleotide binding d	99.62
3etf_A	462	Putative succinate-semialdehyde dehydrogenase; cen	99.62
4dng_A	485	Uncharacterized aldehyde dehydrogenase ALDY; struc	99.61
4e3x_A	563	Delta-1-pyrroline-5-carboxylate dehydrogenase, mit	99.61
3b4w_A	495	Aldehyde dehydrogenase; RV0223C-NAD complex, struc	99.61
3v4c_A	528	Aldehyde dehydrogenase (NADP+); structural genomic	99.61
4f9i_A	1026	Proline dehydrogenase/delta-1-pyrroline-5-carboxy	99.61
4e4g_A	521	Methylmalonate-semialdehyde dehydrogenase; structu	99.61
3ju8_A	490	Succinylglutamic semialdehyde dehydrogenase; alpha	99.61
3sza_A	469	Aldehyde dehydrogenase, dimeric NADP-preferring; A	99.6
3i44_A	497	Aldehyde dehydrogenase; oxidoreductase, structural	99.6
1t90_A	486	MMSDH, probable methylmalonate-semialdehyde dehydr	99.6
3iwj_A	503	Putative aminoaldehyde dehydrogenase; rossmann fol	99.6
1bxs_A	501	Aldehyde dehydrogenase; retinal, class 1, tetramer	99.59
2ve5_A	490	BADH, betaine aldehyde dehydrogenase; aldehyde oxi	99.59
3r64_A	508	NAD dependent benzaldehyde dehydrogenase; structur	99.59
3ty7_A	478	Putative aldehyde dehydrogenase SAV2122; structura	99.58
4h7n_A	474	Aldehyde dehydrogenase; structural genomics, PSI-b	99.58
3r31_A	517	BADH, betaine aldehyde dehydrogenase; structural g	99.58
1o04_A	500	Aldehyde dehydrogenase, mitochondrial precursor; A	99.58
1uxt_A	501	Glyceraldehyde-3-phosphate dehydrogenase (NADP+);	99.57
3haz_A	1001	Proline dehydrogenase; proline utilization A, PUTA	99.56
2y53_A	534	Aldehyde dehydrogenase (BOX pathway); oxidoreducta	99.54
2h5g_A	463	Delta 1-pyrroline-5-carboxylate synthetase; dehydr	99.5
1o20_A	427	Gamma-glutamyl phosphate reductase; TM0293, struct	99.4
3my7_A	452	Alcohol dehydrogenase/acetaldehyde dehydrogenase;	99.39
1vlu_A	468	Gamma-glutamyl phosphate reductase; YOR323C, struc	99.36
4ghk_A	444	Gamma-glutamyl phosphate reductase; structural gen	99.33
3k9d_A	464	LMO1179 protein, aldehyde dehydrogenase; structura	99.32
1use_A	45	VAsp, vasodilator-stimulated phosphoprotein; signa	81.87

>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*

Probab=99.71  E-value=4.7e-17  Score=116.31  Aligned_cols=86  Identities=36%  Similarity=0.619  Sum_probs=80.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+||+.||++|++||+   .|+++|+.+|.++|.+++++|++|+++|+++++.|+|||+.++.. ++..+++.++||+.
T Consensus        42 ~~~dv~~Av~aA~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~~v~~~~~~~~~~a~  118 (490)
T 2wme_A           42 SREDVERAVQSAVEGQK---VWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAG  118 (490)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHTTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999   999999999999999999999999999999999999999999987 79999999999999


Q ss_pred             chhhhcCccc
Q psy13780         80 WCDKIEGSTI   89 (100)
Q Consensus        80 ~~~~~~~~~~   89 (100)
                      .+.++.+...
T Consensus       119 ~~~~~~~~~~  128 (490)
T 2wme_A          119 LVPAIEGEQI  128 (490)
T ss_dssp             HGGGCCEEEE
T ss_pred             ccccccCccc
Confidence            9887766543

>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}

Probab=99.67  E-value=9.8e-16  Score=109.86  Aligned_cols=87  Identities=22%  Similarity=0.379  Sum_probs=81.8

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|++|+++|+++++.|+|||..++..|+..+++.++|++..
T Consensus        47 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~  123 (506)
T 3rh9_A           47 PEEDVVAAVEAGQSALR---LTNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPWKEAQGEVDYAAGFFDYCAKH  123 (506)
T ss_dssp             CHHHHHHHHHHHHHHCC---SSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCcccC
Q psy13780         81 CDKIEGSTIP   90 (100)
Q Consensus        81 ~~~~~~~~~~   90 (100)
                      +.++.+...+
T Consensus       124 ~~~~~~~~~~  133 (506)
T 3rh9_A          124 ISALDSHTIP  133 (506)
T ss_dssp             GGGGCCEECS
T ss_pred             HHHhcCcccc
Confidence            9988765443

>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q

Probab=99.67  E-value=5.3e-16  Score=110.71  Aligned_cols=85  Identities=28%  Similarity=0.443  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|+.+|.++|.+++++|++|.++|+.+++.|+|||+.++..|+..+++.++||+..
T Consensus        48 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~  124 (484)
T 3ifg_A           48 GAAETARAIEAAQAAWA---GWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPLAEAKGEIAYAASFIEWFAEE  124 (484)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.+..
T Consensus       125 ~~~~~g~~  132 (484)
T 3ifg_A          125 GKRVAGDT  132 (484)
T ss_dssp             HTTCCEEE
T ss_pred             HHhhcCcc
Confidence            87765543

>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*

Probab=99.66  E-value=6.8e-16  Score=110.99  Aligned_cols=86  Identities=38%  Similarity=0.587  Sum_probs=80.7

Q ss_pred             ChHHHHHHHHHHHHHh--cCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAF--KRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~--~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a   78 (100)
                      +.+|++.|+++|++||  +   .|+.+|..+|.++|.+++++|+++.++|+++++.|+|||+.++..|+..+++.++||+
T Consensus        68 ~~~dv~~Av~aA~~A~~~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a  144 (520)
T 3ed6_A           68 TKEDAERAILAARRAFESG---EWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKTLEESYADMDDIHNVFMYFA  144 (520)
T ss_dssp             CHHHHHHHHHHHHHHHHHT---TTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccc---ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999  8   9999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhhhcCccc
Q psy13780         79 GWCDKIEGSTI   89 (100)
Q Consensus        79 ~~~~~~~~~~~   89 (100)
                      ..+.++.+...
T Consensus       145 ~~~~~~~g~~~  155 (520)
T 3ed6_A          145 GLADKDGGEMI  155 (520)
T ss_dssp             HHTTSCCEEEE
T ss_pred             HHHHHhcCeec
Confidence            99888766543

>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}

Probab=99.66  E-value=7.2e-16  Score=110.07  Aligned_cols=86  Identities=24%  Similarity=0.402  Sum_probs=81.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|.+|.++|+++++.|+|||..++..|+..++..++|++..
T Consensus        24 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~  100 (484)
T 3ros_A           24 TSKQIDEAINLAHALYK---KWRHEEPASRAEILHDIANALKEHEDELAKMMTLEMGKLLSESKEEVELCVSICNYYADH  100 (484)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCccc
Q psy13780         81 CDKIEGSTI   89 (100)
Q Consensus        81 ~~~~~~~~~   89 (100)
                      +.++.++..
T Consensus       101 ~~~~~~~~~  109 (484)
T 3ros_A          101 GPEMLKPTK  109 (484)
T ss_dssp             HHHHTSCEE
T ss_pred             HHHhcCCee
Confidence            988877643

>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*

Probab=99.66  E-value=6.5e-16  Score=110.31  Aligned_cols=87  Identities=22%  Similarity=0.371  Sum_probs=81.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||.   .|+.+|..+|.++|.+++++|++|.++|+++++.|+|||..++..|+..++..++|++..
T Consensus        32 ~~~~v~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~~~~~a~~  108 (486)
T 3pqa_A           32 SREEAKEAIDTAEKYKE---VMKNLPITKRYNILMNIAKQIKEKKEELAKILAIDAGKPIKQARVEVERSIGTFKLAAFY  108 (486)
T ss_dssp             CHHHHHHHHHHHHHTHH---HHHTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999989999999999999999


Q ss_pred             hhhhcCcccC
Q psy13780         81 CDKIEGSTIP   90 (100)
Q Consensus        81 ~~~~~~~~~~   90 (100)
                      +.++.++..+
T Consensus       109 ~~~~~~~~~~  118 (486)
T 3pqa_A          109 VKEHRDEVIP  118 (486)
T ss_dssp             HHHCCEEEEC
T ss_pred             HHHhcCceec
Confidence            9888665433

>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*

Probab=99.66  E-value=9.1e-16  Score=109.34  Aligned_cols=86  Identities=24%  Similarity=0.409  Sum_probs=80.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.++++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++..|+..+++.++|++..
T Consensus        42 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~  118 (479)
T 2imp_A           42 QAEDARKAIDAAERAQP---EWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLAEVEVAFTADYIDYMAEW  118 (479)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hhhhcCccc
Q psy13780         81 CDKIEGSTI   89 (100)
Q Consensus        81 ~~~~~~~~~   89 (100)
                      +.++.++..
T Consensus       119 ~~~~~~~~~  127 (479)
T 2imp_A          119 ARRYEGEII  127 (479)
T ss_dssp             TTTCCCEEE
T ss_pred             HHHhhCCcc
Confidence            888776643

>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}

Probab=99.65  E-value=7.5e-16  Score=110.41  Aligned_cols=85  Identities=25%  Similarity=0.374  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.||++|++||+   .|+.+|+.+|.++|.+++++|++|.++|+.+++.|+|||+.++..|+..+++.++||+..
T Consensus        68 ~~~dv~~Av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~  144 (504)
T 3ek1_A           68 SVATIKEAIDASAKALS---GWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPLAEARGEVLYAASFIEWFAEE  144 (504)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.+..
T Consensus       145 ~~~~~g~~  152 (504)
T 3ek1_A          145 AKRVYGDT  152 (504)
T ss_dssp             HTTCCEEE
T ss_pred             HHHhcCcc
Confidence            87765543

>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*

Probab=99.65  E-value=1.2e-15  Score=109.61  Aligned_cols=85  Identities=25%  Similarity=0.365  Sum_probs=80.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++..|+..+++.++||+..
T Consensus        72 ~~~~v~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~  148 (516)
T 1uzb_A           72 GKAEAEAALEAAWKAFK---TWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASADVAEAIDFIEYYARA  148 (516)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999989999999999999999


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.++.
T Consensus       149 ~~~~~~~~  156 (516)
T 1uzb_A          149 ALRYRYPA  156 (516)
T ss_dssp             HGGGCSSC
T ss_pred             HHHhcCCc
Confidence            98887654

>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*

Probab=99.65  E-value=6.2e-16  Score=110.69  Aligned_cols=84  Identities=32%  Similarity=0.537  Sum_probs=79.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHH-HhhHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS-IFDLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a-~~ev~~~~~~~~~~a~   79 (100)
                      +.+|++.||++|++||+   .|+.+|+.+|.++|.+++++|++|.++|+.+++.|+|||..++ ..|+..+++.++||+.
T Consensus        60 ~~~dv~~Av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~l~~~a~  136 (498)
T 4f3x_A           60 SHAQIDAAVDAAERAFV---GWSQTTPAERSNALLKIADAIEKEADEFAALEALNCGKPINAVKNDELPAIIDCWRFFAG  136 (498)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHH
Confidence            46899999999999999   9999999999999999999999999999999999999999999 7799999999999999


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+.++.+.
T Consensus       137 ~~~~~~~~  144 (498)
T 4f3x_A          137 AVRNLHAP  144 (498)
T ss_dssp             HTTCCEEE
T ss_pred             HHHHhcCc
Confidence            98876554

>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*

Probab=99.65  E-value=8.7e-16  Score=110.05  Aligned_cols=85  Identities=29%  Similarity=0.572  Sum_probs=80.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++..|+..+++.++||+..
T Consensus        56 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~  132 (503)
T 1a4s_A           56 GAEEVDQAVQSAQAAYL---KWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITEAEYDIDAAWQCIEYYAGL  132 (503)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.+..
T Consensus       133 ~~~~~g~~  140 (503)
T 1a4s_A          133 APTLSGQH  140 (503)
T ss_dssp             GGGCCEEE
T ss_pred             HHHhcCCc
Confidence            98876543

>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*

Probab=99.65  E-value=7.8e-16  Score=110.35  Aligned_cols=85  Identities=25%  Similarity=0.400  Sum_probs=80.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|++|.++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus        47 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~~~~~a~~  123 (505)
T 3prl_A           47 SQEEVNDAIQGAKDAQK---IWKIRPIHERVDLLYAWADLLEERKEIIGELIMHEVAKPKKSAIGEVSRTADIIRHTADE  123 (505)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.+..
T Consensus       124 ~~~~~g~~  131 (505)
T 3prl_A          124 ALRLNGET  131 (505)
T ss_dssp             HHTCCEEE
T ss_pred             HHHhcCcc
Confidence            88876643

>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}

Probab=99.65  E-value=1.1e-15  Score=109.47  Aligned_cols=86  Identities=27%  Similarity=0.372  Sum_probs=81.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|++|.++|+++++.|+|||+.++..|+..++..++|++..
T Consensus        48 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~  124 (497)
T 3k2w_A           48 CKADAENALEVAQAAQK---AWAKLTARTRQNMLRTFANKIRENKHILAPMLVAEQGKLLSVAEMEVDVTATFIDYGCDN  124 (497)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCccc
Q psy13780         81 CDKIEGSTI   89 (100)
Q Consensus        81 ~~~~~~~~~   89 (100)
                      +.++.++..
T Consensus       125 ~~~~~~~~~  133 (497)
T 3k2w_A          125 ALTIEGDIL  133 (497)
T ss_dssp             TTTCCEEEE
T ss_pred             HHHhcCccc
Confidence            988876543

>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*

Probab=99.64  E-value=1.9e-15  Score=107.91  Aligned_cols=85  Identities=26%  Similarity=0.371  Sum_probs=79.7

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||..++..|+..+++.++|++..
T Consensus        46 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~  122 (487)
T 2w8n_A           46 GVREARAAVRAAYEAFC---RWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEE  122 (487)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999   999999999999999999999999999999999999999999988999999999999998


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.+..
T Consensus       123 ~~~~~g~~  130 (487)
T 2w8n_A          123 ARRVYGDI  130 (487)
T ss_dssp             GGGCCCEE
T ss_pred             HHHhcCcc
Confidence            87766554

>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}

Probab=99.64  E-value=1.7e-15  Score=108.75  Aligned_cols=85  Identities=28%  Similarity=0.498  Sum_probs=80.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++..|+..+++.++||+..
T Consensus        62 ~~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a~~  138 (515)
T 2d4e_A           62 GEREVDRAAKAAHEAFQ---RWSRTKAKERKRYLLRIAELIEKHADELAVMECLDAGQVLRIVRAQVARAAENFAFYAEY  138 (515)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.+..
T Consensus       139 ~~~~~g~~  146 (515)
T 2d4e_A          139 AEHAMEDR  146 (515)
T ss_dssp             GGGTTCEE
T ss_pred             HHHhcCcc
Confidence            98877654

>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}

Probab=99.64  E-value=1.9e-15  Score=108.82  Aligned_cols=87  Identities=34%  Similarity=0.575  Sum_probs=80.9

Q ss_pred             ChHHHHHHHHHHHHHh--cCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAF--KRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~--~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a   78 (100)
                      +.+|++.|+++|++||  .   .|+.++..+|.++|.+++++|++++++|+++++.|+|||..++..|+..+++.++|++
T Consensus        59 ~~~dv~~av~aA~~A~~~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~l~~~a  135 (528)
T 3u4j_A           59 SADDVRKAVAAARKAFDAG---PWPRMSGAERSRLMFKVADLILARQEELALIESLEVGKPIAQARGEIGFCADLWSYAA  135 (528)
T ss_dssp             CHHHHHHHHHHHHHHHHTS---SGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccc---ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999  8   8999999999999999999999999999999999999999999779999999999999


Q ss_pred             hchhhhcCcccC
Q psy13780         79 GWCDKIEGSTIP   90 (100)
Q Consensus        79 ~~~~~~~~~~~~   90 (100)
                      ..+.++.+...+
T Consensus       136 ~~~~~~~~~~~~  147 (528)
T 3u4j_A          136 GQARALEGQTHN  147 (528)
T ss_dssp             HHHTTCCEEEEC
T ss_pred             HHHHHhcCeeec
Confidence            999887665433

>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*

Probab=99.64  E-value=1.7e-15  Score=108.90  Aligned_cols=88  Identities=48%  Similarity=0.944  Sum_probs=80.3

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-hhHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI-FDLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~~~~~a~   79 (100)
                      +.+|++.||++|++||+.| .|+.+|+.+|.++|.+++++|.+|.++|+.+++.|+|||+.++. .|+..+++.++||+.
T Consensus        72 ~~~dv~~av~aA~~A~~~g-~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~  150 (517)
T 2o2p_A           72 QVSDVDKAVAAAKEAFENG-LWGKINARDRGRLLYRLADVMEQHQEELATIEALDAGAVYTLALKTHVGMSIQTFRYFAG  150 (517)
T ss_dssp             CHHHHHHHHHHHHHHHHTS-GGGTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccC-ccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999722 59999999999999999999999999999999999999999998 699999999999999


Q ss_pred             chhhhcCccc
Q psy13780         80 WCDKIEGSTI   89 (100)
Q Consensus        80 ~~~~~~~~~~   89 (100)
                      .+.++.+...
T Consensus       151 ~~~~~~g~~~  160 (517)
T 2o2p_A          151 WCDKIQGATI  160 (517)
T ss_dssp             HGGGCCEEEE
T ss_pred             HHHHhcCccc
Confidence            9988766543

>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*

Probab=99.64  E-value=2.5e-15  Score=107.63  Aligned_cols=85  Identities=25%  Similarity=0.475  Sum_probs=79.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||.   .|+.+|..+|.++|.+++++|.+|+++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus        57 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~  133 (500)
T 2j6l_A           57 SVADYEETVKKAREAWK---IWADIPAPKRGEIVRQIGDALREKIQVLGSLVSLEMGKILVEGVGEVQEYVDICDYAVGL  133 (500)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999977999999999999998


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.+..
T Consensus       134 ~~~~~g~~  141 (500)
T 2j6l_A          134 SRMIGGPI  141 (500)
T ss_dssp             TTTCCCBE
T ss_pred             HHHhcCcc
Confidence            87765543

>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A

Probab=99.64  E-value=2.6e-15  Score=108.31  Aligned_cols=85  Identities=26%  Similarity=0.445  Sum_probs=78.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|+.+|.++|.+++++|++++++|+++++.|+|||+.++..|+..+++.++||+..
T Consensus        72 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~~~a~~  148 (538)
T 3qan_A           72 NQDLAEKAIQSADEAFQ---TWRNVNPEERANILVKAAAIIRRRKHEFSAWLVHEAGKPWKEADADTAEAIDFLEYYARQ  148 (538)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999998


Q ss_pred             h-hhhcCcc
Q psy13780         81 C-DKIEGST   88 (100)
Q Consensus        81 ~-~~~~~~~   88 (100)
                      + ....+..
T Consensus       149 ~~~~~~~~~  157 (538)
T 3qan_A          149 MIELNRGKE  157 (538)
T ss_dssp             HHHHHTCBC
T ss_pred             HHHhcCCee
Confidence            4 4444443

>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A

Probab=99.63  E-value=1.4e-15  Score=108.79  Aligned_cols=85  Identities=33%  Similarity=0.548  Sum_probs=79.8

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||..++.. |+..+++.++|++.
T Consensus        58 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~  134 (495)
T 1wnd_A           58 SAEQVDAAVRAADAAFA---EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAG  134 (495)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999   999999999999999999999999999999999999999999988 99999999999999


Q ss_pred             chhhhcCcc
Q psy13780         80 WCDKIEGST   88 (100)
Q Consensus        80 ~~~~~~~~~   88 (100)
                      .+.++.+..
T Consensus       135 ~~~~~~g~~  143 (495)
T 1wnd_A          135 AARCLNGLA  143 (495)
T ss_dssp             HTTCCEEEC
T ss_pred             HHHHhcCcc
Confidence            988776543

>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*

Probab=99.63  E-value=1.5e-15  Score=108.19  Aligned_cols=85  Identities=21%  Similarity=0.348  Sum_probs=79.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.++++|++||+   .|+.+|..+|.++|.+++++|.+|.++|+++++.|+|||+.++..|+..+++.++|++..
T Consensus        38 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~  114 (475)
T 1euh_A           38 STEEVDYVYASAKKAQP---AWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSAVSEVVRTAEIINYAAEE  114 (475)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999   999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.++.
T Consensus       115 ~~~~~~~~  122 (475)
T 1euh_A          115 GLRMEGEV  122 (475)
T ss_dssp             HTTCCEEE
T ss_pred             HHHhcCCc
Confidence            88776553

>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*

Probab=99.62  E-value=4.1e-15  Score=105.47  Aligned_cols=84  Identities=21%  Similarity=0.231  Sum_probs=79.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.++++|++||.   .|+.+|..+|.++|.+++++|+++.++|+++++.|+|||..++.. |+..++..++|++.
T Consensus        26 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~  102 (457)
T 3lns_A           26 SPAKIDSLFSAQKAYFA---TRATADVGFRKQSLERLKEAVINNKEALYSALAEDLGKPKDVVDLAEIGAVLHEIDFALA  102 (457)
T ss_dssp             CHHHHHHHHHHHHHHHH---TTTTCSHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999985 99999999999999


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+.++.+.
T Consensus       103 ~~~~~~~~  110 (457)
T 3lns_A          103 HLDEWVAP  110 (457)
T ss_dssp             HHHHHTSC
T ss_pred             HHHHhhcc
Confidence            98887653

>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}

Probab=99.62  E-value=3.5e-15  Score=106.40  Aligned_cols=85  Identities=28%  Similarity=0.450  Sum_probs=79.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|.++.++|+.+++.|+|||..++..|+..+++.++|++..
T Consensus        45 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~  121 (481)
T 3jz4_A           45 GADETRAAIDAANRALP---AWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEE  121 (481)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.+..+..
T Consensus       122 ~~~~~~~~  129 (481)
T 3jz4_A          122 GKRIYGDT  129 (481)
T ss_dssp             GGGCCEEE
T ss_pred             HHHhcCcc
Confidence            77655443

>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*

Probab=99.62  E-value=4.3e-15  Score=106.60  Aligned_cols=84  Identities=18%  Similarity=0.285  Sum_probs=78.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||..++..|+..++..++||+..
T Consensus        28 ~~~~v~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~Ev~~~~~~~~~~a~~  104 (510)
T 1ez0_A           28 TEVEVNQAATAAAKVAR---DFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEVRLTGEIARTANQLRLFADV  104 (510)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999998888999999999999999


Q ss_pred             hhh--hcCc
Q psy13780         81 CDK--IEGS   87 (100)
Q Consensus        81 ~~~--~~~~   87 (100)
                      +.+  +.++
T Consensus       105 ~~~~~~~~~  113 (510)
T 1ez0_A          105 VNSGSYHQA  113 (510)
T ss_dssp             HHHTGGGCE
T ss_pred             HHhCccccc
Confidence            876  5543

>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A

Probab=99.62  E-value=4.2e-15  Score=105.46  Aligned_cols=85  Identities=14%  Similarity=0.296  Sum_probs=80.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.++++|++||.   .|+.+|..+|.++|.+++++|++|.++|+++++.|+|||..++..|+..++..++|++..
T Consensus        27 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~  103 (462)
T 3etf_A           27 NAQEIEHALSLAASGFK---KWKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQARAEVTKSAALCDWYAEH  103 (462)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.++.
T Consensus       104 ~~~~~~~~  111 (462)
T 3etf_A          104 GPAMLNPE  111 (462)
T ss_dssp             HHHHTSCE
T ss_pred             HHHhcCCc
Confidence            88776543

>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}

Probab=99.61  E-value=5.5e-15  Score=105.45  Aligned_cols=85  Identities=15%  Similarity=0.229  Sum_probs=79.7

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|++|.++|+.+++.|+|||+.++..|+..++..++|++..
T Consensus        42 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~  118 (485)
T 4dng_A           42 TGKQLEDAFDIAQKAQK---EWAKSTTEDRKAVLQKARGYLHENRDDIIMMIARETGGTIIKSTIELEQTIAILDEAMTY  118 (485)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +..+.+..
T Consensus       119 ~~~~~~~~  126 (485)
T 4dng_A          119 TGELGGVK  126 (485)
T ss_dssp             GGGCSCEE
T ss_pred             HHHhCCee
Confidence            87765543

>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A

Probab=99.61  E-value=3.6e-15  Score=108.08  Aligned_cols=85  Identities=22%  Similarity=0.307  Sum_probs=79.8

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHcCCChHHHHhh-HHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKN-VDYLASLETLDNGKPYEDSIFD-LGCASDTFRYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~-~~~l~~~~~~e~Gk~~~~a~~e-v~~~~~~~~~~a   78 (100)
                      +.+||+.||++|++||+   .|+.+|..+|.++|.+++++|.++ +++|+.+++.|+|||+.++..+ +..+++.++|++
T Consensus        98 ~~~dv~~Av~aA~~A~~---~W~~~~~~~R~~iL~~~a~~l~~~~~~el~~~~~~e~Gk~~~ea~~e~v~~~~~~~~~~a  174 (563)
T 4e3x_A           98 DKALLNRAIDAALAARK---EWDLKPMADRAQVFLKAADMLSGPRRAEVLAKTMVGQGKTVIQAEIDAAAELIDFFRFNA  174 (563)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcCCCHHHHhHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999 9999999999999999999886 999999999999


Q ss_pred             hchhhhcCcc
Q psy13780         79 GWCDKIEGST   88 (100)
Q Consensus        79 ~~~~~~~~~~   88 (100)
                      ..+.++.+..
T Consensus       175 ~~~~~~~~~~  184 (563)
T 4e3x_A          175 KFAVELEGEQ  184 (563)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHhhCCC
Confidence            9998887643

>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}

Probab=99.61  E-value=4.7e-15  Score=106.08  Aligned_cols=87  Identities=28%  Similarity=0.429  Sum_probs=79.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-hhHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI-FDLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~~~~~a~   79 (100)
                      +.+|++.|+++|++||+.| .|+.+|+.+|.++|.+++++|.+|+++|+++++.|+|||+.++. .|+..+++.++||+.
T Consensus        44 ~~~~v~~av~~A~~A~~~g-~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~Ev~~~~~~~~~~a~  122 (495)
T 3b4w_A           44 AAADVDAAVAAARAAFDNG-PWPSTPPHERAAVIAAAVKMLAERKDLFTKLLAAETGQPPTIIETMHWMGSMGAMNYFAG  122 (495)
T ss_dssp             CHHHHHHHHHHHHHHHHHS-STTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTTTHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcccC-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999721 59999999999999999999999999999999999999999998 799999999999999


Q ss_pred             chhhhcCcc
Q psy13780         80 WCDKIEGST   88 (100)
Q Consensus        80 ~~~~~~~~~   88 (100)
                      .+.++.+..
T Consensus       123 ~~~~~~g~~  131 (495)
T 3b4w_A          123 AADKVTWTE  131 (495)
T ss_dssp             CGGGSCSEE
T ss_pred             HHHHhcCCc
Confidence            998887653

>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}

Probab=99.61  E-value=6.2e-15  Score=106.12  Aligned_cols=80  Identities=20%  Similarity=0.305  Sum_probs=77.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||.   .|+.+|..+|.++|.+++++|++|+++|+.+++.|+|||+.++..|+..+++.++||+..
T Consensus        61 ~~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~l~~~a~~  137 (528)
T 3v4c_A           61 TVELVNRACEAAEEAFW---TYGYSSRKERAAFLRAIADEIEARAEAITEIGSQETGLPEARLNGERGRTTGQLRLFADH  137 (528)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999988999999999999999


Q ss_pred             hhh
Q psy13780         81 CDK   83 (100)
Q Consensus        81 ~~~   83 (100)
                      +.+
T Consensus       138 ~~~  140 (528)
T 3v4c_A          138 IEK  140 (528)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            877

>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}

Probab=99.61  E-value=6e-15  Score=112.57  Aligned_cols=85  Identities=27%  Similarity=0.422  Sum_probs=80.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.||++|++||+   .|+.+|+.+|.++|.+++++|.+++++|+.+++.|+|||+.++..|+..+++.++||+..
T Consensus       566 ~~~dv~~Av~aA~~A~~---~W~~~~~~eRa~iL~~~Adll~~~~~eLa~~~~~E~GK~~~ea~~Ev~~aid~lr~~a~~  642 (1026)
T 4f9i_A          566 GTTEVGDAIAAAKAAFP---AWRDTDPRTRAEYLLKAAQAARKRLFELSAWQVLEIGKQWDQAYADVTEAIDFLEYYARE  642 (1026)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---hcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.+..
T Consensus       643 ~~~~~~~~  650 (1026)
T 4f9i_A          643 MIRLGQPQ  650 (1026)
T ss_dssp             HHHHTSCE
T ss_pred             HHHhcCCc
Confidence            98876543

>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}

Probab=99.61  E-value=4.5e-15  Score=106.78  Aligned_cols=83  Identities=27%  Similarity=0.391  Sum_probs=77.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|++|+++|+++++.|+|||..++..|+..+++.++||+..
T Consensus        62 ~~~dv~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~~~a~~  138 (521)
T 4e4g_A           62 SDADLAAAVESAKAAQP---KWAATNPQRRARVFMKFVQLLNDNMNELAEMLSREHGKTIDDAKGDIVRGLEVCEFVIGI  138 (521)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHTH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhhhcC
Q psy13780         81 CDKIEG   86 (100)
Q Consensus        81 ~~~~~~   86 (100)
                      ...+.+
T Consensus       139 ~~~~~~  144 (521)
T 4e4g_A          139 PHLQKS  144 (521)
T ss_dssp             HHHTCE
T ss_pred             HHHhcC
Confidence            655543

>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}

Probab=99.61  E-value=4.9e-15  Score=105.85  Aligned_cols=85  Identities=22%  Similarity=0.280  Sum_probs=79.7

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.++++|++||.   .|+.+|..+|.++|.+++++|++|+++|+++++.|+|||..++..|+..+++.++|++..
T Consensus        40 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~~~~  116 (490)
T 3ju8_A           40 DATQVDAAVCAAREAFP---AWARRPLEQRIELLERFAATLKSRADELARVIGEETGKPLWESATEVTSMVNKVAISVQA  116 (490)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999   999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +..+.+..
T Consensus       117 ~~~~~~~~  124 (490)
T 3ju8_A          117 FRERTGEK  124 (490)
T ss_dssp             HHHHSCCE
T ss_pred             HHHhcCCc
Confidence            87776543

>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*

Probab=99.60  E-value=7.1e-15  Score=104.58  Aligned_cols=84  Identities=18%  Similarity=0.152  Sum_probs=76.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|++|.++|+++++.|+|||..++.. |+..++..+++++.
T Consensus        16 s~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~~~   92 (469)
T 3sza_A           16 HMSKISEAVKRARAAFS---SGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWNAYYEEVVYVLEEIEYMIQ   92 (469)
T ss_dssp             --CHHHHHHHHHHHHHH---TTTTCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999   999999999999999999999999999999999999999999985 99999999999998


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+..|..+
T Consensus        93 ~~~~~~~~  100 (469)
T 3sza_A           93 KLPEWAAD  100 (469)
T ss_dssp             HHHHHHSC
T ss_pred             HHHhhhcc
Confidence            88777543

>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}

Probab=99.60  E-value=6.4e-15  Score=105.47  Aligned_cols=83  Identities=23%  Similarity=0.374  Sum_probs=77.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-hhHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI-FDLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~~~~~a~   79 (100)
                      +.+|++.|+++|++||+   .|+.+|+.+|.++|.+++++|++|.++|+++++.|+|||+.++. .|+..+++.+++++.
T Consensus        61 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~ev~~~~~~~~~~a~  137 (497)
T 3i44_A           61 STRDADKAINAAKKAFQ---TWKTTSPHERLGFVEKILEIYEKRSSDMAKTISMEMGAPIDMALNAQTATGSSHIRNFIK  137 (497)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   99999999999999999999999999999999999999999999 699999999999999


Q ss_pred             chhhhcC
Q psy13780         80 WCDKIEG   86 (100)
Q Consensus        80 ~~~~~~~   86 (100)
                      .+..+..
T Consensus       138 ~~~~~~~  144 (497)
T 3i44_A          138 AYKEFSF  144 (497)
T ss_dssp             HHHHCCS
T ss_pred             Hhhcccc
Confidence            8776543

>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}

Probab=99.60  E-value=4.3e-15  Score=106.08  Aligned_cols=83  Identities=25%  Similarity=0.515  Sum_probs=76.8

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++..|+..+++.++|++..
T Consensus        41 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~  117 (486)
T 1t90_A           41 TKEDIDYAAQTAAEAFK---TWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGA  117 (486)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTH
T ss_pred             CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999   999999999999999999999999999999999999999999988999999999999876


Q ss_pred             hhhhcC
Q psy13780         81 CDKIEG   86 (100)
Q Consensus        81 ~~~~~~   86 (100)
                      ...+.+
T Consensus       118 ~~~~~g  123 (486)
T 1t90_A          118 PSLMMG  123 (486)
T ss_dssp             HHHHCE
T ss_pred             HHHhcC
Confidence            555444

>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*

Probab=99.60  E-value=6e-15  Score=105.70  Aligned_cols=87  Identities=29%  Similarity=0.546  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHHHHHhcCC--CccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHH
Q psy13780          1 MSADVDKAVESAKAAFKRG--SVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~--~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a   78 (100)
                      +.+||+.|+++|++||..+  +.|+.+|..+|.++|.+++++|++|+++|+++++.|+|||+.++..|+..++..++|++
T Consensus        43 ~~~~v~~av~~A~~A~~~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a  122 (503)
T 3iwj_A           43 TKEDVDVAVAAAKTALTRNKGADWATASGAVRARYLRAIAAKVTEKKPELAKLESIDCGKPLDEAAWDIDDVAGCFEYYA  122 (503)
T ss_dssp             CHHHHHHHHHHHHHHHHGGGGTTTTSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhcCCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999732  16999999999999999999999999999999999999999999889999999999999


Q ss_pred             hchhhhcCc
Q psy13780         79 GWCDKIEGS   87 (100)
Q Consensus        79 ~~~~~~~~~   87 (100)
                      ..+.++.+.
T Consensus       123 ~~~~~~~~~  131 (503)
T 3iwj_A          123 DLAEKLDAR  131 (503)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhcCC
Confidence            998877543

>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*

Probab=99.59  E-value=1.1e-14  Score=104.25  Aligned_cols=88  Identities=49%  Similarity=0.855  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHH-hhHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI-FDLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~-~ev~~~~~~~~~~a~   79 (100)
                      +.+|++.|+++|++||+.||.|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||+.++. .|+..+++.++||+.
T Consensus        56 ~~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~e~~~~ev~~~~~~~~~~a~  135 (501)
T 1bxs_A           56 DKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAG  135 (501)
T ss_dssp             CHHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhcccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999721149999999999999999999999999999999999999999875 499999999999999


Q ss_pred             chhhhcCcc
Q psy13780         80 WCDKIEGST   88 (100)
Q Consensus        80 ~~~~~~~~~   88 (100)
                      .+.++.++.
T Consensus       136 ~~~~~~g~~  144 (501)
T 1bxs_A          136 WADKIQGRT  144 (501)
T ss_dssp             HGGGCCEEE
T ss_pred             HHHHhhCCe
Confidence            998887654

>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}

Probab=99.59  E-value=7.5e-15  Score=105.31  Aligned_cols=83  Identities=25%  Similarity=0.387  Sum_probs=78.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.++..+|.++|.+++++|++|.++|+++++.|+|||..++..|+..++..++|++..
T Consensus        48 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~Ev~~~~~~~~~~a~~  124 (508)
T 3r64_A           48 SIADVDAAYEAAKKAQA---EWAATPAAERSAIIYRAAELLEEHREEIVEWLIKESGSTRSKANLEITLAGNITKESASF  124 (508)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhcC
Q psy13780         81 CDKIEG   86 (100)
Q Consensus        81 ~~~~~~   86 (100)
                      +..+.+
T Consensus       125 ~~~~~~  130 (508)
T 3r64_A          125 PGRVHG  130 (508)
T ss_dssp             TTTCCE
T ss_pred             hhhhcC
Confidence            876554

>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}

Probab=99.58  E-value=1.3e-14  Score=103.35  Aligned_cols=84  Identities=25%  Similarity=0.233  Sum_probs=78.7

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHH-HhhHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS-IFDLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a-~~ev~~~~~~~~~~a~   79 (100)
                      +.+|++.++++|++||+   .|+.+|+.+|.++|.++++.|++|.++|+++++.|+|||..++ ..|+..++..++|++.
T Consensus        43 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~  119 (478)
T 3ty7_A           43 NKADVDKAVEAADDVYL---EFRHTSVKERQALLDKIVKEYENRKDDIVQAITDELGAPLSLSERVHYQMGLNHFVAARD  119 (478)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHH
Confidence            46899999999999999   9999999999999999999999999999999999999999999 5699999999999999


Q ss_pred             chhhhcCc
Q psy13780         80 WCDKIEGS   87 (100)
Q Consensus        80 ~~~~~~~~   87 (100)
                      .+.++.+.
T Consensus       120 ~~~~~~~~  127 (478)
T 3ty7_A          120 ALDNYEFE  127 (478)
T ss_dssp             HHHHCCSE
T ss_pred             HHHHhhcc
Confidence            98876553

>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}

Probab=99.58  E-value=8.1e-15  Score=104.36  Aligned_cols=83  Identities=13%  Similarity=0.211  Sum_probs=75.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|+++||++|++||+   .|+.+|+.+|.++|.+++++|.+|+++|+++++.|+|||.. +..|+...+..+++|+..
T Consensus        26 ~~~~v~~av~~A~~A~~---~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~-~~~ev~~~~~~~~~~~~~  101 (474)
T 4h7n_A           26 PPRLLAQQCNRARRAQS---RWQELGVEGRITTLQQWKQAILSRREQLTEALVNDTGRLSI-TVLEIDSFLASIDRWCGL  101 (474)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHSCSHH-HHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHhh
Confidence            46899999999999999   99999999999999999999999999999999999999854 456999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++...
T Consensus       102 ~~~~~~~  108 (474)
T 4h7n_A          102 APELLQT  108 (474)
T ss_dssp             HHHHHCC
T ss_pred             hhhcccc
Confidence            8776543

>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}

Probab=99.58  E-value=8.3e-15  Score=105.30  Aligned_cols=78  Identities=29%  Similarity=0.469  Sum_probs=75.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+   .|+.+|..+|.++|.+++++|+++.++|+++++.|+|||..++  |+..+++.++|++..
T Consensus        50 ~~~dv~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea--ev~~~~~~~~~~a~~  124 (517)
T 3r31_A           50 TPAIVERAIASAKRAQK---EWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQET--IVADPTSGADAFEFF  124 (517)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHH--HHHSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHH
Confidence            46899999999999999   9999999999999999999999999999999999999999998  999999999999999


Q ss_pred             hhh
Q psy13780         81 CDK   83 (100)
Q Consensus        81 ~~~   83 (100)
                      +..
T Consensus       125 ~~~  127 (517)
T 3r31_A          125 GGI  127 (517)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            877

>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...

Probab=99.58  E-value=1.4e-14  Score=103.72  Aligned_cols=88  Identities=56%  Similarity=0.931  Sum_probs=79.2

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+|++.|+++|++||+.||.|+.+|+.+|.++|.+++++|.+|+++|+++++.|+|||+.++.. |+..+++.++||+.
T Consensus        55 ~~~~v~~av~~A~~A~~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~~ev~~~~~~~~~~a~  134 (500)
T 1o04_A           55 DKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAG  134 (500)
T ss_dssp             CHHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999997111599999999999999999999999999999999999999998754 99999999999999


Q ss_pred             chhhhcCcc
Q psy13780         80 WCDKIEGST   88 (100)
Q Consensus        80 ~~~~~~~~~   88 (100)
                      .+.++.++.
T Consensus       135 ~~~~~~g~~  143 (500)
T 1o04_A          135 WADKYHGKT  143 (500)
T ss_dssp             HTTTCCEEE
T ss_pred             HHHHhhCcc
Confidence            998887654

>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*

Probab=99.57  E-value=1.4e-14  Score=103.74  Aligned_cols=86  Identities=21%  Similarity=0.307  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+|++.|+++|++||+.  .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||..++..|+..+++.++||+..
T Consensus        52 ~~~~v~~av~~A~~A~~~--~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~Ev~~~~~~l~~~a~~  129 (501)
T 1uxt_A           52 SREEVERTLDVLFKRGRW--SARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDRLRLAELD  129 (501)
T ss_dssp             CHHHHHHHHHHHHHTHHH--HHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTGGGG
T ss_pred             CHHHHHHHHHHHHHHhhh--hhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999961  499999999999999999999999999999999999999999989999999999999999


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      +.++.+..
T Consensus       130 ~~~~~g~~  137 (501)
T 1uxt_A          130 LKKIGGDY  137 (501)
T ss_dssp             GGGTCCEE
T ss_pred             HHHhcCcc
Confidence            98876654

>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}

Probab=99.56  E-value=2.6e-14  Score=108.93  Aligned_cols=84  Identities=27%  Similarity=0.396  Sum_probs=79.7

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.||++|++||.   .|+.+|+.+|.++|.+++++|++|+++|+.+++.|+|||+.++..||..+++.++||+..
T Consensus       548 ~~~dv~~Av~aA~~A~~---~W~~~~~~eR~~iL~~~ad~l~~~~~eLa~~~~~E~GK~~~ea~~Ev~~ai~~lr~~a~~  624 (1001)
T 3haz_A          548 TPDQAHAAVAAARAGFA---GWSRTPAGIRAAALEQAAHLLESRSAHFIALLQREGGKTLDDALSELREAADFCRYYAAQ  624 (1001)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999989999999999999999


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus       625 a~~~~g~  631 (1001)
T 3haz_A          625 GRKLFGS  631 (1001)
T ss_dssp             HHHHHSS
T ss_pred             HHhhcCc
Confidence            8877653

>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*

Probab=99.54  E-value=2.2e-14  Score=103.39  Aligned_cols=80  Identities=19%  Similarity=0.249  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHH-hcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhch
Q psy13780          3 ADVDKAVESAKAA-FKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGWC   81 (100)
Q Consensus         3 ~~v~~ai~~a~~a-~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~~   81 (100)
                      +|++.||++|++| |+   .|+.+|..+|.++|.+++++|++|+++|+++++.|+|||+.++..|+..++..++||+..+
T Consensus        43 ~dv~~Av~aA~~A~~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ea~~ev~~~~~~~~~~a~~~  119 (534)
T 2y53_A           43 LDLARAFSFAREDGGA---ALRALTYAQRAARLADIVKLLQAKRGDYYAIATANSGTTRNDSAVDIDGGIFTLSYYAKLG  119 (534)
T ss_dssp             CCHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh---hhhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999 59   9999999999999999999999999999999999999999999889999999999999987


Q ss_pred             hhhc
Q psy13780         82 DKIE   85 (100)
Q Consensus        82 ~~~~   85 (100)
                      .++.
T Consensus       120 ~~~~  123 (534)
T 2y53_A          120 ASLG  123 (534)
T ss_dssp             HTTC
T ss_pred             Hhcc
Confidence            6653

>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}

Probab=99.50  E-value=2.7e-14  Score=101.45  Aligned_cols=84  Identities=20%  Similarity=0.221  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc-------CCChH----HHHhhHHHH
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDN-------GKPYE----DSIFDLGCA   70 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~-------Gk~~~----~a~~ev~~~   70 (100)
                      .+|++.|+++|++||+   .|+.+|..+|.++|.+++++|.+++++|+++++.|+       |||+.    ++..||..+
T Consensus        28 ~~~v~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~g~~~~~~Gk~~~~rl~~a~~ev~~~  104 (463)
T 2h5g_A           28 GPTVEQQGEMARSGGR---MLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRLAAPLLKRLSLSTSKLNSL  104 (463)
T ss_dssp             -CCHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTSCHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccccCCCchhhhhhhhHHHHHHH
Confidence            4579999999999999   999999999999999999999999999999999999       79997    466799999


Q ss_pred             HHHHHHHHhchhhhcCcc
Q psy13780         71 SDTFRYFAGWCDKIEGST   88 (100)
Q Consensus        71 ~~~~~~~a~~~~~~~~~~   88 (100)
                      ++.++|++..+.++.++.
T Consensus       105 ~~~~~~~a~~~~~~~g~~  122 (463)
T 2h5g_A          105 AIGLRQIAASSQDSVGRV  122 (463)
T ss_dssp             HHHHHHHHHHCTTSTTCE
T ss_pred             HHHHHHHHHhhHhhcCcc
Confidence            999999998887776654

>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1

Probab=99.40  E-value=5.8e-13  Score=93.79  Aligned_cols=79  Identities=19%  Similarity=0.243  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCh----HHHH--------hhHHH
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY----EDSI--------FDLGC   69 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~----~~a~--------~ev~~   69 (100)
                      .++++.+|++|++||+   .|+.+|+.+|.++|.+++++|.+|+++|+++++.|+|||.    .++.        .|+..
T Consensus        13 ~~~~~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~   89 (427)
T 1o20_A           13 MDELLEKAKKVREAWD---VLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDE   89 (427)
T ss_dssp             -CHHHHHHHHHHHHHH---HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccHHHHHHHhcCHHHHHH
Confidence            3689999999999999   9999999999999999999999999999999999999986    4553        48999


Q ss_pred             HHHHHHHHHhchhh
Q psy13780         70 ASDTFRYFAGWCDK   83 (100)
Q Consensus        70 ~~~~~~~~a~~~~~   83 (100)
                      +++.+++|+.....
T Consensus        90 ~~~~l~~~a~~~~~  103 (427)
T 1o20_A           90 MIKACETVIGLKDP  103 (427)
T ss_dssp             HHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHhcccc
Confidence            99999999987654

>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}

Probab=99.39  E-value=2.2e-12  Score=91.38  Aligned_cols=75  Identities=13%  Similarity=0.089  Sum_probs=67.8

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHH-HHHH
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTF-RYFA   78 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~-~~~a   78 (100)
                      +.+|++.++++|++||+   .|+.+|.++|.++|.+++++|.+|+++|+++++.|+|||..++.. ++..+...+ ++++
T Consensus         5 ~~~~v~~av~~A~~A~~---~w~~~~~~~R~~il~~~a~~l~~~~~~la~~~~~e~Gk~~~e~~~~~~~~a~~~~~~~~~   81 (452)
T 3my7_A            5 NMAELDAMIARVKKAQE---EFATYSQEQVDKIFRAASLAANQARIPLAQQAVEESGMGIVEDKVIKNHFASEFIYNKYK   81 (452)
T ss_dssp             SHHHHHHHHHHHHHHHH---HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            46899999999999999   999999999999999999999999999999999999999999886 777777766 4444

>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1

Probab=99.36  E-value=3.9e-13  Score=95.65  Aligned_cols=79  Identities=16%  Similarity=0.316  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCh----HHHH-hhHHH-HHHHHHHH
Q psy13780          4 DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY----EDSI-FDLGC-ASDTFRYF   77 (100)
Q Consensus         4 ~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~----~~a~-~ev~~-~~~~~~~~   77 (100)
                      .++.|+++|++||+   .|+.+|..+|.++|.+++++|.+|+++|+++++.|+|||.    .++. .|+.. ++..++++
T Consensus        15 ~~~~av~aA~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~   91 (468)
T 1vlu_A           15 SSQQIAKNARKAGN---ILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVM   91 (468)
T ss_dssp             HHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHH
T ss_pred             hHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccchHHHHHHhhhhHHHHHHH
Confidence            57899999999999   9999999999999999999999999999999999999998    8875 58888 88999999


Q ss_pred             Hhchhhhc
Q psy13780         78 AGWCDKIE   85 (100)
Q Consensus        78 a~~~~~~~   85 (100)
                      +..++++.
T Consensus        92 a~~~~~~~   99 (468)
T 1vlu_A           92 LQGIKDVA   99 (468)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99887775

>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}

Probab=99.33  E-value=3.7e-12  Score=90.08  Aligned_cols=78  Identities=13%  Similarity=0.144  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChH----HHH--------hhHHH
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE----DSI--------FDLGC   69 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~----~a~--------~ev~~   69 (100)
                      .+|++.|+++|++||+   .|+.+|+.+|.++|.+++++|.+|.++|+++++.|+||+..    ++.        .++..
T Consensus        25 ~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~  101 (444)
T 4ghk_A           25 DQYMTDVGRRARRASR---SIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKT  101 (444)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhccchHHHHHHhhccHHHHHH
Confidence            4689999999999999   99999999999999999999999999999999999999853    444        26888


Q ss_pred             HHHHHHHHHhchh
Q psy13780         70 ASDTFRYFAGWCD   82 (100)
Q Consensus        70 ~~~~~~~~a~~~~   82 (100)
                      ++..+++++....
T Consensus       102 ~~~~l~~~a~~~~  114 (444)
T 4ghk_A          102 MVEGLRQVATLPD  114 (444)
T ss_dssp             HHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999987654

>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}

Probab=99.32  E-value=9.4e-12  Score=88.41  Aligned_cols=75  Identities=16%  Similarity=0.085  Sum_probs=65.2

Q ss_pred             hHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          2 SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         2 ~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      .+|++.++++|++||+   .|+.+|.++|.++|.+++++|.++.++|+++++.|+|||..++.. +.......+..++.
T Consensus        11 ~~~v~~av~~A~~A~~---~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~e~~~~~~~~~~~~~~~~~~   86 (464)
T 3k9d_A           11 IQEVRNLIESANKAQK---ELAAMSQQQIDTIVKAIADAGYGAREKLAKMAHEETGFGIWQDKVIKNVFASKHVYNYIK   86 (464)
T ss_dssp             HHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhh
Confidence            5789999999999999   999999999999999999999999999999999999999988765 44455555544443

>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A

Probab=81.87  E-value=2.1  Score=20.54  Aligned_cols=30  Identities=10%  Similarity=0.059  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q psy13780         29 GRGKLIYKLAELIDKNVDYLASLETLDNGK   58 (100)
Q Consensus        29 ~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk   58 (100)
                      -..++|.-+...|.+-+++|++++..|..+
T Consensus        12 ~KqEIL~E~RkElqK~K~EIIeAi~~El~~   41 (45)
T 1use_A           12 VKQELLEEVKKELQKVKEEIIEAFVQELRK   41 (45)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356889999999999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	100
d1ez0a_	504	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	9e-24
d1o04a_	494	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	1e-21
d1bxsa_	494	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	2e-20
d1ad3a_	446	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	2e-19
d1euha_	474	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	9e-17
d1wnda_	474	c.82.1.1 (A:) Putative betaine aldehyde dehydrogen	3e-16
d1ky8a_	499	c.82.1.1 (A:) Non-phosphorylating glyceraldehyde-3	5e-16
d1o20a_	414	c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {	3e-14
d1a4sa_	503	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	8e-14
d1uzba_	516	c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogen	5e-12

>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Vibrio harveyi [TaxId: 669]} Length = 504

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Vibrio harveyi [TaxId: 669]

 Score = 91.3 bits (225), Expect = 9e-24
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +V++A  +A    +    +R L+ S R  L+  +A  ++   D + +   L+   P   
Sbjct: 26  VEVNQAATAAAKVAR---DFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEVR 82

Query: 63  SIFDLGCASDTFRYFAGWCDKIEGSTIP 90
              ++   ++  R FA   +        
Sbjct: 83  LTGEIARTANQLRLFADVVNSGSYHQAI 110

>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 494

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 1e-21
 Identities = 50/91 (54%), Positives = 66/91 (72%), Gaps = 1/91 (1%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-E 61
            DVDKAV++A+AAF+ GS WR +DAS RG+L+ +LA+LI+++  YLA+LETLDNGKPY  
Sbjct: 51  EDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVI 110

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
             + DL       RY+AGW DK  G TIP +
Sbjct: 111 SYLVDLDMVLKCLRYYAGWADKYHGKTIPID 141

>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Sheep (Ovis aries) [TaxId: 9940]} Length = 494

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 81.6 bits (201), Expect = 2e-20
 Identities = 45/91 (49%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPY-E 61
            DVDKAV++A+ AF+ GS WR +DAS RG+L+ KLA+LI+++   LA++E ++ GK +  
Sbjct: 51  EDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSN 110

Query: 62  DSIFDLGCASDTFRYFAGWCDKIEGSTIPSE 92
             + DLG    T RY AGW DKI+G TIP +
Sbjct: 111 AYLMDLGGCIKTLRYCAGWADKIQGRTIPMD 141

>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 446

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.2 bits (194), Expect = 2e-19
 Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 5   VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSI 64
           +   V+ A+ AF      +      R + +  L  +I++N+  ++     D GK    S 
Sbjct: 2   ISDTVKRAREAFNS---GKTRSLQFRIQQLEALQRMINENLKSISGALASDLGKNEWTSY 58

Query: 65  F-DLGCASDTFRYFAGWCDKIEGSTIPSESKDNIGNK 100
           + ++    +                  ++++    + 
Sbjct: 59  YEEVAHVLEELDTTIKELPDWAEDEPVAKTRQTQQDD 95

>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Streptococcus mutans [TaxId: 1309]} Length = 474

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Streptococcus mutans [TaxId: 1309]

 Score = 71.5 bits (174), Expect = 9e-17
 Identities = 16/82 (19%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +VD    SAK A      WR L    R   ++K+A+++ ++ + + ++ + +  K Y+ 
Sbjct: 39  EEVDYVYASAKKAQP---AWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKS 95

Query: 63  SIFDLGCASDTFRYFAGWCDKI 84
           ++ ++   ++   Y A    ++
Sbjct: 96  AVSEVVRTAEIINYAAEEGLRM 117

>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW {Escherichia coli [TaxId: 562]} Length = 474

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Putative betaine aldehyde dehydrogenase YdcW
species: Escherichia coli [TaxId: 562]

 Score = 70.2 bits (171), Expect = 3e-16
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
             VD AV +A AAF     W       R + + KLA++I++N    A LE+ + GKP   
Sbjct: 39  EQVDAAVRAADAAFAE---WGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHS 95

Query: 63  SIFDLGCASDTFRYFAGWC 81
           +  D   A      F    
Sbjct: 96  AFNDEIPAIVDVFRFFAGA 114

>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon Thermoproteus tenax [TaxId: 2271]} Length = 499

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN
species: Archaeon Thermoproteus tenax [TaxId: 2271]

 Score = 69.2 bits (168), Expect = 5e-16
 Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 2   SADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYE 61
             +V++ ++      +     R++  + R  ++ K A++I++N+D  A +  ++ GKP  
Sbjct: 51  REEVERTLDVLFKRGRWS--ARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKS 108

Query: 62  DSIFDLGCASDTFRYFAGWCDKIE 85
            ++ ++  A D  R       KI 
Sbjct: 109 AAVGEVKAAVDRLRLAELDLKKIG 132

>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]} Length = 414

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Gamma-glutamyl phosphate reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 64.3 bits (155), Expect = 3e-14
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 4  DVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDS 63
          ++ +  +  + A+    V RN     + K I K+AE +D+    +     +D  K  E  
Sbjct: 2  ELLEKAKKVREAWD---VLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERG 58

Query: 64 IFD-----LGCASDTFRYFAGWCDKI 84
          + +     L             C+ +
Sbjct: 59 VKESLVDRLALNDKRIDEMIKACETV 84

>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Baltic cod (Gadus callarias) [TaxId: 8053]} Length = 503

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Baltic cod (Gadus callarias) [TaxId: 8053]

 Score = 63.2 bits (153), Expect = 8e-14
 Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
            +VD+AV+SA+AA+ +   W  +    R +++ + A +I +  D +A LE ++NGK   +
Sbjct: 58  EEVDQAVQSAQAAYLK---WSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITE 114

Query: 63  SIFDLGCASDTFRYFAGWCD 82
           + +D+  A     Y+AG   
Sbjct: 115 AEYDIDAAWQCIEYYAGLAP 134

>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 516

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: 1-pyrroline-5-carboxylate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 58.0 bits (139), Expect = 5e-12
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 3   ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYED 62
           A+ + A+E+A  AFK    W++     R +L+ K A L+ +    L +    + GK + +
Sbjct: 74  AEAEAALEAAWKAFKT---WKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVE 130

Query: 63  SIFDLGCASDTFRYFAGWCDKIE 85
           +  D+  A D   Y+A    +  
Sbjct: 131 ASADVAEAIDFIEYYARAALRYR 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1ez0a_	504	Aldehyde reductase (dehydrogenase), ALDH {Vibrio h	99.71
d1a4sa_	503	Aldehyde reductase (dehydrogenase), ALDH {Baltic c	99.68
d1uzba_	516	1-pyrroline-5-carboxylate dehydrogenase {Thermus t	99.66
d1o04a_	494	Aldehyde reductase (dehydrogenase), ALDH {Human (H	99.64
d1ky8a_	499	Non-phosphorylating glyceraldehyde-3-phosphate deh	99.63
d1bxsa_	494	Aldehyde reductase (dehydrogenase), ALDH {Sheep (O	99.63
d1ad3a_	446	Aldehyde reductase (dehydrogenase), ALDH {Rat (Rat	99.61
d1wnda_	474	Putative betaine aldehyde dehydrogenase YdcW {Esch	99.56
d1euha_	474	Aldehyde reductase (dehydrogenase), ALDH {Streptoc	99.54
d1o20a_	414	Gamma-glutamyl phosphate reductase {Thermotoga mar	99.47
d1vlua_	436	Gamma-glutamyl phosphate reductase {Baker's yeast	97.91
d1v63a_	101	Nucleolar transcription factor 1 (Upstream binding	85.95

>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Vibrio harveyi [TaxId: 669]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Vibrio harveyi [TaxId: 669]

Probab=99.71  E-value=3.2e-17  Score=115.72  Aligned_cols=82  Identities=18%  Similarity=0.276  Sum_probs=77.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||++||++|+.||+   .|+++|+.+|.++|.+++++|++|+++|+.+++.|+|||..++..|+..+++.++||++.
T Consensus        24 ~~~dv~~Av~aA~~A~~---~W~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~e~Gkp~~~a~~Ev~~~~~~~~~~a~~  100 (504)
T d1ez0a_          24 TEVEVNQAATAAAKVAR---DFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEVRLTGEIARTANQLRLFADV  100 (504)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhc
Q psy13780         81 CDKIE   85 (100)
Q Consensus        81 ~~~~~   85 (100)
                      +.+..
T Consensus       101 ~~~~~  105 (504)
T d1ez0a_         101 VNSGS  105 (504)
T ss_dssp             HHHTG
T ss_pred             Hhhhc
Confidence            76654

>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Baltic cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Baltic cod (Gadus callarias) [TaxId: 8053]

Probab=99.68  E-value=1.2e-16  Score=112.77  Aligned_cols=85  Identities=29%  Similarity=0.572  Sum_probs=79.9

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||++||++|++||+   .|+++|..+|.++|.+++++|++|+++|+++++.|+|||+.++..|+..++..++|++..
T Consensus        56 ~~~dV~~AV~aA~~A~~---~W~~~s~~eR~~iL~~~a~~L~~~~eela~~~~~etGkp~~ea~~ev~~~~~~l~~~a~~  132 (503)
T d1a4sa_          56 GAEEVDQAVQSAQAAYL---KWSKMAGIERSRVMLEAARIIRERRDNIAKLEVINNGKTITEAEYDIDAAWQCIEYYAGL  132 (503)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcchhhhhhhhhhhhcccccccc
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhcCcc
Q psy13780         81 CDKIEGST   88 (100)
Q Consensus        81 ~~~~~~~~   88 (100)
                      ..+..+..
T Consensus       133 ~~~~~~~~  140 (503)
T d1a4sa_         133 APTLSGQH  140 (503)
T ss_dssp             GGGCCEEE
T ss_pred             cccccccc
Confidence            87765543

>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: 1-pyrroline-5-carboxylate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=6.3e-16  Score=109.24  Aligned_cols=84  Identities=25%  Similarity=0.367  Sum_probs=79.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.||++|++||+   .|+++|..+|.++|.+++++|++|+++|+.+++.|+|||+.++..|+..++..+++++..
T Consensus        72 ~~~dv~~Av~aA~~A~~---~W~~~s~~~R~~iL~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~  148 (516)
T d1uzba_          72 GKAEAEAALEAAWKAFK---TWKDWPQEDRSRLLLKAAALMRRRKRELEATLVYEVGKNWVEASADVAEAIDFIEYYARA  148 (516)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccchhHHHHHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +..+.+.
T Consensus       149 ~~~~~~~  155 (516)
T d1uzba_         149 ALRYRYP  155 (516)
T ss_dssp             HGGGCSS
T ss_pred             HHhhhhc
Confidence            8776554

>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.64  E-value=8.5e-16  Score=108.08  Aligned_cols=90  Identities=57%  Similarity=0.953  Sum_probs=80.4

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+||+.||++|++||..+..|+++++.+|.++|+++++.|++|+++|+.+++.|+|||..++.. ++..++..++|++.
T Consensus        49 ~~~dv~~Av~aA~~Af~~~~~W~~~~~~eRa~iL~~~a~~l~~~~eela~~~~~E~GK~~~ea~~~ev~~~~~~~~~~a~  128 (494)
T d1o04a_          49 DKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAG  128 (494)
T ss_dssp             CHHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccchhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCcchhhhhhhHHHHHHHHHHHHHH
Confidence            46899999999999996222599999999999999999999999999999999999999999865 99999999999999


Q ss_pred             chhhhcCcccC
Q psy13780         80 WCDKIEGSTIP   90 (100)
Q Consensus        80 ~~~~~~~~~~~   90 (100)
                      .+.++.+...+
T Consensus       129 ~~~~~~~~~~~  139 (494)
T d1o04a_         129 WADKYHGKTIP  139 (494)
T ss_dssp             HTTTCCEEEEC
T ss_pred             HHHHhcCceec
Confidence            98887665444

>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=99.63  E-value=6.2e-16  Score=108.82  Aligned_cols=85  Identities=21%  Similarity=0.318  Sum_probs=78.5

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.||++|++++++  .|+.+|..+|+++|.+++++|.+|+++|+++++.|+|||..++..||..++..++|++..
T Consensus        50 ~~~dv~~Av~~A~~a~~~--~w~~~~~~~R~~iL~~~a~~l~~~~~~la~~~~~etGk~~~~a~~Ev~~~i~~~~~~a~~  127 (499)
T d1ky8a_          50 SREEVERTLDVLFKRGRW--SARDMPGTERLAVLRKAADIIERNLDVFAEVLVMNAGKPKSAAVGEVKAAVDRLRLAELD  127 (499)
T ss_dssp             CHHHHHHHHHHHHHTHHH--HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHGGGGG
T ss_pred             CHHHHHHHHHHHHHhchh--hhhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHhhhhhcccccccchhhh
Confidence            468999999999888873  699999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCc
Q psy13780         81 CDKIEGS   87 (100)
Q Consensus        81 ~~~~~~~   87 (100)
                      +.++.+.
T Consensus       128 ~~~~~~~  134 (499)
T d1ky8a_         128 LKKIGGD  134 (499)
T ss_dssp             GTTTCCE
T ss_pred             hhhhhhc
Confidence            8876554

>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Sheep (Ovis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=99.63  E-value=1.4e-15  Score=106.86  Aligned_cols=90  Identities=50%  Similarity=0.880  Sum_probs=80.1

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+||+.||++|++||..+..|+.+|+++|.++|.+++++|++|+++|+.+++.|+|||..++.. ++...++.+++++.
T Consensus        49 ~~~dvd~Av~aA~~Af~a~~~W~~~s~~eR~~iL~kia~~L~~~~eela~l~~~E~Gk~~~e~~~~ev~~~~~~~~~~a~  128 (494)
T d1bxsa_          49 DKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLIERDRLLLATMEAMNGGKLFSNAYLMDLGGCIKTLRYCAG  128 (494)
T ss_dssp             CHHHHHHHHHHHHHHTSTTSHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccchhhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCCchhhhhhhhhhhhhHHHHHHhh
Confidence            46899999999999996322699999999999999999999999999999999999999998764 89999999999999


Q ss_pred             chhhhcCcccC
Q psy13780         80 WCDKIEGSTIP   90 (100)
Q Consensus        80 ~~~~~~~~~~~   90 (100)
                      ...++.+...+
T Consensus       129 ~~~~~~~~~~~  139 (494)
T d1bxsa_         129 WADKIQGRTIP  139 (494)
T ss_dssp             HGGGCCEEEEC
T ss_pred             hhhhhcceeec
Confidence            98887665444

>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=3.7e-15  Score=103.67  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHhchhh
Q psy13780          5 VDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAGWCDK   83 (100)
Q Consensus         5 v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~~~~~   83 (100)
                      |++||++|++||+   .|+.+|.++|.++|++++++|++|+++|+++++.|+|||..++.. |+..++..+++++..+..
T Consensus         2 v~~av~~Ar~Af~---~w~~~s~~~R~~iL~~~a~~l~~~~~~l~~~~~~e~GK~~~ea~~~ev~~~i~~~~~~~~~~~~   78 (446)
T d1ad3a_           2 ISDTVKRAREAFN---SGKTRSLQFRIQQLEALQRMINENLKSISGALASDLGKNEWTSYYEEVAHVLEELDTTIKELPD   78 (446)
T ss_dssp             HHHHHHHHHHHHH---TTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999   999999999999999999999999999999999999999999975 999999999999988877


Q ss_pred             hcCc
Q psy13780         84 IEGS   87 (100)
Q Consensus        84 ~~~~   87 (100)
                      +..+
T Consensus        79 ~~~~   82 (446)
T d1ad3a_          79 WAED   82 (446)
T ss_dssp             HHSC
T ss_pred             hhcc
Confidence            6544

>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Putative betaine aldehyde dehydrogenase YdcW
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=5.7e-15  Score=103.29  Aligned_cols=80  Identities=34%  Similarity=0.546  Sum_probs=71.0

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHh-hHHHHHHHHHHHHh
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIF-DLGCASDTFRYFAG   79 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~-ev~~~~~~~~~~a~   79 (100)
                      +.+||+.||++|++||+   .|+++|+.+|.++|.+++++|++++++|+++++.|+|||+.++.. ++..+...+++++.
T Consensus        37 ~~~dv~~Av~aA~~A~~---~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~~~~e~Gk~~~~a~~~~~~~~~~~~~~~~~  113 (474)
T d1wnda_          37 SAEQVDAAVRAADAAFA---EWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAG  113 (474)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCChhHhhhccccccccccccccc
Confidence            46899999999999999   999999999999999999999999999999999999999999976 66666676666666


Q ss_pred             chhh
Q psy13780         80 WCDK   83 (100)
Q Consensus        80 ~~~~   83 (100)
                      ....
T Consensus       114 ~~~~  117 (474)
T d1wnda_         114 AARC  117 (474)
T ss_dssp             HTTC
T ss_pred             cccc
Confidence            5443

>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Streptococcus mutans [TaxId: 1309]

Probab=99.54  E-value=1.9e-14  Score=100.34  Aligned_cols=81  Identities=20%  Similarity=0.323  Sum_probs=75.6

Q ss_pred             ChHHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhhHHHHHHHHHHHHhc
Q psy13780          1 MSADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFDLGCASDTFRYFAGW   80 (100)
Q Consensus         1 ~~~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~ev~~~~~~~~~~a~~   80 (100)
                      +.+||+.||++|++||+   .|+++|.++|.++|.+++++|.+|+++|+.+++.|+|||..++..|+...+..++++...
T Consensus        37 ~~~dv~~Ai~~A~~A~~---~W~~~s~~~R~~iL~~~a~~L~~~~~~la~~~~~e~Gk~~~~a~~e~~~~~~~~~~~~~~  113 (474)
T d1euha_          37 STEEVDYVYASAKKAQP---AWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSAVSEVVRTAEIINYAAEE  113 (474)
T ss_dssp             CHHHHHHHHHHHHHHHH---HHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhH---HHhhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhccccchhHHHHHHHHHH
Confidence            46899999999999999   999999999999999999999999999999999999999999999999999999998887


Q ss_pred             hhhh
Q psy13780         81 CDKI   84 (100)
Q Consensus        81 ~~~~   84 (100)
                      ....
T Consensus       114 ~~~~  117 (474)
T d1euha_         114 GLRM  117 (474)
T ss_dssp             HTTC
T ss_pred             Hhhh
Confidence            6443

>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Gamma-glutamyl phosphate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=2.4e-14  Score=98.47  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCChHHHHhh------------HHHH
Q psy13780          3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLETLDNGKPYEDSIFD------------LGCA   70 (100)
Q Consensus         3 ~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~~~e~Gk~~~~a~~e------------v~~~   70 (100)
                      +|+.++++.|++||+   .|+++|+.+|.++|++++++|++|+++|+++++.|+||+..++..|            +...
T Consensus         1 ee~~~a~~~A~~Af~---~w~~~s~~eR~~iL~k~a~~l~~~~~eia~~~~~e~gk~~~~~~~e~~~~rl~~~~~~i~~~   77 (414)
T d1o20a_           1 DELLEKAKKVREAWD---VLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEM   77 (414)
T ss_dssp             CHHHHHHHHHHHHHH---HHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHhccccHHHHHHHhccHHHHHHH
Confidence            578999999999999   9999999999999999999999999999999999999998876544            5567


Q ss_pred             HHHHHHHHhchhhh
Q psy13780         71 SDTFRYFAGWCDKI   84 (100)
Q Consensus        71 ~~~~~~~a~~~~~~   84 (100)
                      ++.+++++......
T Consensus        78 ~~~~~~~~~~~~~~   91 (414)
T d1o20a_          78 IKACETVIGLKDPV   91 (414)
T ss_dssp             HHHHHHHHHSCCCT
T ss_pred             HHHHHHHHHhhhhc
Confidence            78888888765443

>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Gamma-glutamyl phosphate reductase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=1.3e-05  Score=54.98  Aligned_cols=54  Identities=15%  Similarity=0.369  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHcCCC
Q psy13780          3 ADVDKAVESAKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASL------ETLDNGKP   59 (100)
Q Consensus         3 ~~v~~ai~~a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~------~~~e~Gk~   59 (100)
                      ..++++++.|+.||+   .|+.+|.++|.++|.++++.|++|+++|.+.      ...+.|.+
T Consensus         3 ~~~e~~~~~Ak~A~~---~l~~~s~~~R~~iL~~~a~~L~~~~~eI~~aN~~Dl~~a~~~g~~   62 (436)
T d1vlua_           3 SSSQQIAKNARKAGN---ILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLA   62 (436)
T ss_dssp             CHHHHHHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHcCCc
Confidence            467889999999999   9999999999999999999999999999873      34556655

>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HMG-box
superfamily: HMG-box
family: HMG-box
domain: Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.95  E-value=0.95  Score=23.76  Aligned_cols=38  Identities=11%  Similarity=-0.023  Sum_probs=32.3

Q ss_pred             HHHHhcCCCccccCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy13780         12 AKAAFKRGSVWRNLDASGRGKLIYKLAELIDKNVDYLASLE   52 (100)
Q Consensus        12 a~~a~~~~~~w~~~~~~~R~~~L~~~~~~l~~~~~~l~~~~   52 (100)
                      ++..-.   .|..+|.++|..+..........+..++....
T Consensus        38 ~k~~g~---~Wk~ls~~eK~~Y~~~a~~~~~~y~~e~~~y~   75 (101)
T d1v63a_          38 MVEIGS---RWQRISQSQKEHYKKLAEEQQRQYKVHLDLWV   75 (101)
T ss_dssp             HHHHHH---HHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH---HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455   79999999999999999999999999988754