Psyllid ID: psy13797

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34

DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEELQCSVFENGLRMSQTGEVYNATQITKDTKVRLVRANAVR

cccccccEEEcccccccccccccHHHHHHHHHcccccccccccEEEEcccccccccccccccHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccEEEEEEEEEEEEEEccccccccccccccccccccccccccEEEEEccccEEEEccccEEEEEccccccEEEEEcccccccHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEcccccc

cccccccEEEEccccHHHcccccHHHHHHHHHccccccccEEEEEEEEcccEEEccccccccHHHHHHHHHcccEEEEcccHHccHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccEEEEEEEEccEEEEEEccccccccccccccccccHHHccccEEEEEEccccEEEcccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHccHHHHHcccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccEccEEEEccccEEEEEEccccc

dhwekeplyiSRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDitlyedgqrqtmdvegralPQIVWDhyregcsirflnpqtyiKPLQQLNASLQELFGcfvgantyqtpptaqgfaphydDIEAFILQLEGKKKwkvylprmvdeylprysspnfsqeeigtpiltvtlepgdllylprgyihqastvtnehSLHVTISVYQKTAWIDLLEKAMPKALQAagatdlefrrglpigylryaglargkpvdiqADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQlmhdalppvlspeelqcsvfenglrmsqtgevynatqitkdTKVRLVRANAVR

dhwekeplyisrkqknyynnlitskkiddilRDNVIEFKKNiditlyedgqrqtmdVEGRALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAgatdlefrrGLPIGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEELQCSVFENGLRMSQTgevynatqitkdtkvrlvranavr

*******LYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEELQCSVFENGLRMSQTGEVYNATQITKDT*V*********

DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLRYAGLARG*******DRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEEL**********MSQTGEVYNATQITKDTKVRLVRANA**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		339	2.2.26 [Sep-21-2011]
Q16W06		635	Bifunctional lysine-speci	N/A	N/A	0.994	0.530	0.507	2e-99
B0WMG3		648	Bifunctional lysine-speci	N/A	N/A	0.988	0.516	0.504	1e-96
A3KP59		544	Bifunctional lysine-speci	yes	N/A	0.994	0.619	0.471	2e-94
Q5ZMM1		601	Bifunctional lysine-speci	yes	N/A	0.991	0.559	0.494	3e-94
B4M7P8		907	Bifunctional lysine-speci	N/A	N/A	0.991	0.370	0.467	3e-88
B4GUZ2		687	Bifunctional lysine-speci	N/A	N/A	0.985	0.486	0.455	9e-87
B3NU20		657	Bifunctional lysine-speci	N/A	N/A	0.994	0.512	0.457	1e-86
B4Q068		683	Bifunctional lysine-speci	N/A	N/A	0.994	0.493	0.454	3e-86
B5DUH6		946	Bifunctional lysine-speci	no	N/A	0.985	0.353	0.45	2e-85
C3XRY1		607	Bifunctional lysine-speci	yes	N/A	0.920	0.514	0.471	5e-85

>sp\|Q16W06\|NO66_AEDAE Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Aedes aegypti GN=AAEL009382 PE=3 SV=1	Back alignment and function desciption

 Score =  362 bits (930), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/339 (50%), Positives = 225/339 (66%), Gaps = 2/339 (0%)

Query: 1   DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGR 60
           ++WEK+PL I RK  +YY+NL++  KID++LR N IE+ KNID+T Y +GQR+T + +GR
Sbjct: 222 NYWEKKPLLIQRKNPSYYSNLLSRAKIDEMLRQNNIEYTKNIDVTSYREGQRETHNPDGR 281

Query: 61  ALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPH 120
            LP  +W  Y EGCSIR LNPQTY+  + ++N  LQE F C  GAN Y TPP +QGFAPH
Sbjct: 282 VLPPDMWSFYEEGCSIRMLNPQTYLPGVYEMNVKLQEFFHCMTGANFYLTPPNSQGFAPH 341

Query: 121 YDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLP 180
           YDDIEAF+LQ+EG+K WK+Y PR   E L R SSPNF+QEEIGTPIL V LEPGDLLY P
Sbjct: 342 YDDIEAFVLQVEGRKHWKLYSPREPAEMLARVSSPNFTQEEIGTPILEVVLEPGDLLYFP 401

Query: 181 RGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLR 240
           RG IHQASTV   HSLHVT+SVYQK  W DLLE   P AL  A  T  + RRG+P+   +
Sbjct: 402 RGIIHQASTVPGHHSLHVTMSVYQKNCWADLLELFFPHALAQAAETHFDLRRGIPLNLHQ 461

Query: 241 YAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEE 300
           + G+           R  +  ++K L+ K+     +D  VD++ K+  HDALPP++S  E
Sbjct: 462 HFGIVHSD--SETPARKQLISHIKSLVDKVFSEDAIDSAVDQLAKRFQHDALPPLISNTE 519

Query: 301 LQCSVFENGLRMSQTGEVYNATQITKDTKVRLVRANAVR 339
              +V+ +    +  G V      T+++ VRL+R N +R
Sbjct: 520 QSTTVYGSSFSHNPDGTVSLRVPFTENSTVRLLRCNVLR 558

Histone demethylase that specifically demethylates 'Lys-4' (H3K4me) and 'Lys-36' (H3K36me) of histone H3, thereby playing a central role in histone code.
Aedes aegypti (taxid: 7159)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2EC: 7

>sp\|B0WMG3\|NO66_CULQU Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Culex quinquefasciatus GN=CPIJ008401 PE=3 SV=1	Back alignment and function description

>sp\|A3KP59\|NO66_DANRE Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Danio rerio GN=no66 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZMM1\|NO66_CHICK Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Gallus gallus GN=NO66 PE=2 SV=1	Back alignment and function description

>sp\|B4M7P8\|NO66_DROVI Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Drosophila virilis GN=GJ17031 PE=3 SV=1	Back alignment and function description

>sp\|B4GUZ2\|NO66_DROPE Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Drosophila persimilis GN=GL12933 PE=3 SV=1	Back alignment and function description

>sp\|B3NU20\|NO66_DROER Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Drosophila erecta GN=GG18702 PE=3 SV=1	Back alignment and function description

>sp\|B4Q068\|NO66_DROYA Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Drosophila yakuba GN=GE16340 PE=3 SV=1	Back alignment and function description

>sp\|B5DUH6\|NO66_DROPS Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Drosophila pseudoobscura pseudoobscura GN=GA27866 PE=3 SV=1	Back alignment and function description

>sp\|C3XRY1\|NO66_BRAFL Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Branchiostoma floridae GN=BRAFLDRAFT_123918 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		339
328792924		489	PREDICTED: lysine-specific demethylase N	0.991	0.687	0.556	1e-110
340723554		492	PREDICTED: lysine-specific demethylase N	0.991	0.682	0.552	1e-110
380022474		489	PREDICTED: lysine-specific demethylase N	0.991	0.687	0.553	1e-109
307169522		447	JmjC domain-containing protein CG2982 [C	0.985	0.747	0.554	1e-109
350426682		492	PREDICTED: lysine-specific demethylase N	0.991	0.682	0.547	1e-109
383850995		615	PREDICTED: lysine-specific demethylase N	0.991	0.546	0.55	1e-108
322793511		494	hypothetical protein SINV_11691 [Solenop	0.985	0.676	0.511	1e-102
156540940		448	PREDICTED: lysine-specific demethylase N	0.994	0.752	0.510	2e-98
307209000		621	JmjC domain-containing protein CG2982 [H	0.991	0.541	0.507	3e-98
157123061		635	hypothetical protein AaeL_AAEL009382 [Ae	0.994	0.530	0.507	1e-97

>gi\|328792924\|ref\|XP_395039.4\| PREDICTED: lysine-specific demethylase NO66-like [Apis mellifera]	Back alignment and taxonomy information

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/338 (55%), Positives = 242/338 (71%), Gaps = 2/338 (0%)

Query: 2   HWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRA 61
           +WEK P++I R    YY  L+++  +D ILR++ I F KNIDIT YE+G R+T +  GRA
Sbjct: 69  NWEKTPVHIKRNFPKYYKLLMSTPMLDKILRESYILFTKNIDITSYENGVRETHNPIGRA 128

Query: 62  LPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHY 121
           +P +VWD+Y  GCS+R LNPQTYI  L  LNA+LQE FGCF+GAN+Y TPP +QGFAPHY
Sbjct: 129 VPTVVWDYYMNGCSVRMLNPQTYIPKLHSLNATLQEFFGCFIGANSYLTPPNSQGFAPHY 188

Query: 122 DDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPR 181
           DDIEAFILQ+EGKK+W++Y PR  +EYLPRYSS NFSQ EIG PIL   +  GDLLY PR
Sbjct: 189 DDIEAFILQIEGKKRWRLYKPRNQNEYLPRYSSENFSQFEIGEPILDTIVNEGDLLYFPR 248

Query: 182 GYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLRY 241
           G IHQ  T+ N HSLH+T+SVYQK +W D LEK +P AL AA   + EFR+GLPI YLRY
Sbjct: 249 GTIHQGETIDNTHSLHITLSVYQKNSWGDFLEKLLPNALTAAIKENYEFRKGLPIDYLRY 308

Query: 242 AGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEEL 301
            G    +  +   D+   KE +K LL+KL++Y+D+D+  D M K  +HD LPPVLS  E 
Sbjct: 309 CGYVHSEIQNNSKDKF--KEKIKHLLSKLIDYIDIDEAADLMAKNHIHDFLPPVLSESER 366

Query: 302 QCSVFENGLRMSQTGEVYNATQITKDTKVRLVRANAVR 339
           +CSV ++G +M + G V N  +I  DT+ RL R++ +R
Sbjct: 367 ECSVTQDGEKMIENGIVNNRVEIEPDTRFRLARSHCIR 404

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|340723554\|ref\|XP_003400154.1\| PREDICTED: lysine-specific demethylase NO66-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|380022474\|ref\|XP_003695070.1\| PREDICTED: lysine-specific demethylase NO66-like [Apis florea]	Back alignment and taxonomy information

>gi\|307169522\|gb\|EFN62164.1\| JmjC domain-containing protein CG2982 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|350426682\|ref\|XP_003494511.1\| PREDICTED: lysine-specific demethylase NO66-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|383850995\|ref\|XP_003701049.1\| PREDICTED: lysine-specific demethylase NO66-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|322793511\|gb\|EFZ17039.1\| hypothetical protein SINV_11691 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|156540940\|ref\|XP_001599259.1\| PREDICTED: lysine-specific demethylase NO66-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|307209000\|gb\|EFN86200.1\| JmjC domain-containing protein CG2982 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|157123061\|ref\|XP_001653808.1\| hypothetical protein AaeL_AAEL009382 [Aedes aegypti] gi\|122105602\|sp\|Q16W06.1\|NO66_AEDAE RecName: Full=Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66; AltName: Full=Histone lysine demethylase NO66 gi\|108874534\|gb\|EAT38759.1\| AAEL009382-PA [Aedes aegypti]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		339
UNIPROTKB\|Q16W06		635	AAEL009382 "Bifunctional lysin	0.994	0.530	0.510	4.5e-91
UNIPROTKB\|B0WMG3		648	CPIJ008401 "Bifunctional lysin	0.988	0.516	0.504	1.2e-88
ZFIN\|ZDB-GENE-041008-221		544	zgc:162967 "zgc:162967" [Danio	0.994	0.619	0.471	3.3e-86
UNIPROTKB\|F1NJ46		601	C5H14orf169 "Uncharacterized p	0.991	0.559	0.497	5.4e-86
UNIPROTKB\|Q5ZMM1		601	NO66 "Bifunctional lysine-spec	0.991	0.559	0.494	1.1e-85
UNIPROTKB\|B4M7P8		907	GJ17031 "Bifunctional lysine-s	0.991	0.370	0.467	2.5e-81
UNIPROTKB\|B4GUZ2		687	GL12933 "Bifunctional lysine-s	0.985	0.486	0.455	2.9e-80
UNIPROTKB\|B3NU20		657	GG18702 "Bifunctional lysine-s	0.994	0.512	0.457	9.7e-80
UNIPROTKB\|B5DUH6		946	GA27866 "Bifunctional lysine-s	0.985	0.353	0.45	9.7e-80
UNIPROTKB\|B4Q068		683	GE16340 "Bifunctional lysine-s	0.991	0.491	0.459	1.6e-79

UNIPROTKB\|Q16W06 AAEL009382 "Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66" [Aedes aegypti (taxid:7159)]	Back alignment and assigned GO terms

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 173/339 (51%), Positives = 227/339 (66%)

Query:     1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGR 60
             ++WEK+PL I RK  +YY+NL++  KID++LR N IE+ KNID+T Y +GQR+T + +GR
Sbjct:   222 NYWEKKPLLIQRKNPSYYSNLLSRAKIDEMLRQNNIEYTKNIDVTSYREGQRETHNPDGR 281

Query:    61 ALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPH 120
              LP  +W  Y EGCSIR LNPQTY+  + ++N  LQE F C  GAN Y TPP +QGFAPH
Sbjct:   282 VLPPDMWSFYEEGCSIRMLNPQTYLPGVYEMNVKLQEFFHCMTGANFYLTPPNSQGFAPH 341

Query:   121 YDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLP 180
             YDDIEAF+LQ+EG+K WK+Y PR   E L R SSPNF+QEEIGTPIL V LEPGDLLY P
Sbjct:   342 YDDIEAFVLQVEGRKHWKLYSPREPAEMLARVSSPNFTQEEIGTPILEVVLEPGDLLYFP 401

Query:   181 RGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLR 240
             RG IHQASTV   HSLHVT+SVYQK  W DLLE   P AL  A  T  + RRG+P+   +
Sbjct:   402 RGIIHQASTVPGHHSLHVTMSVYQKNCWADLLELFFPHALAQAAETHFDLRRGIPLNLHQ 461

Query:   241 YAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEE 300
             + G+      +  A R  +  ++K L+ K+     +D  VD++ K+  HDALPP++S  E
Sbjct:   462 HFGIVHSDS-ETPA-RKQLISHIKSLVDKVFSEDAIDSAVDQLAKRFQHDALPPLISNTE 519

Query:   301 LQCSVFENGLRMSQTGEVYNATQITKDTKVRLVRANAVR 339
                +V+ +    +  G V      T+++ VRL+R N +R
Sbjct:   520 QSTTVYGSSFSHNPDGTVSLRVPFTENSTVRLLRCNVLR 558

GO:0005506 "iron ion binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=ISS

GO:0032453 "histone demethylase activity (H3-K4 specific)" evidence=ISS

GO:0034720 "histone H3-K4 demethylation" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0051864 "histone demethylase activity (H3-K36 specific)" evidence=ISS

GO:0070544 "histone H3-K36 demethylation" evidence=ISS

UNIPROTKB\|B0WMG3 CPIJ008401 "Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66" [Culex quinquefasciatus (taxid:7176)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041008-221 zgc:162967 "zgc:162967" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NJ46 C5H14orf169 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZMM1 NO66 "Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|B4M7P8 GJ17031 "Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66" [Drosophila virilis (taxid:7244)]	Back alignment and assigned GO terms

UNIPROTKB\|B4GUZ2 GL12933 "Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66" [Drosophila persimilis (taxid:7234)]	Back alignment and assigned GO terms

UNIPROTKB\|B3NU20 GG18702 "Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66" [Drosophila erecta (taxid:7220)]	Back alignment and assigned GO terms

UNIPROTKB\|B5DUH6 GA27866 "Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]	Back alignment and assigned GO terms

UNIPROTKB\|B4Q068 GE16340 "Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66" [Drosophila yakuba (taxid:7245)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54K96	NO66_DICDI	1, ., 1, 4, ., 1, 1, ., 2, 7	0.4556	0.9646	0.6361	yes	N/A
A3KP59	NO66_DANRE	1, ., 1, 4, ., 1, 1, ., 2, 7	0.4719	0.9941	0.6194	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	0.691
4th Layer	1.14.11.27	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		339
pfam08007		319	pfam08007, Cupin_4, Cupin superfamily protein	9e-55
COG2850		383	COG2850, COG2850, Uncharacterized conserved protei	6e-10
pfam13621		247	pfam13621, Cupin_8, Cupin-like domain	2e-06

>gnl\|CDD\|219693 pfam08007, Cupin_4, Cupin superfamily protein	Back alignment and domain information

 Score =  181 bits (461), Expect = 9e-55
 Identities = 84/326 (25%), Positives = 136/326 (41%), Gaps = 26/326 (7%)

Query: 1   DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEF---KKNIDITLYEDGQRQTMDV 57
           ++W+K+PL I R+    +    +   +  + ++  +E    K + D   +   +    + 
Sbjct: 7   EYWQKKPLLI-RRALPDFAGPFSPDDLAGLAQEEDVESRLIKGDRDKNQWRVSRGPFAER 65

Query: 58  EGRALPQIVWDHYREGCS------IRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTP 111
           + R LP   W    +G         + L P  ++ P  +++  +          N Y TP
Sbjct: 66  DFRKLPAADWTLLVQGVDLWLPEVAQLLQPFRFL-PDWRIDDIMISFSLVGS--NVYATP 122

Query: 112 PTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTL 171
             +QG  PHYDD + F+LQLEG+K+W+V         L  YS P     +   P+    L
Sbjct: 123 GGSQGVGPHYDDYDVFLLQLEGRKRWRVG--APCVPDLEFYSDPPLRILDDFEPVHDFVL 180

Query: 172 EPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFR 231
           EPGD+LYLPRG+IHQ   V  + SLH ++     T   +LL   +   L      D  +R
Sbjct: 181 EPGDMLYLPRGFIHQG--VALDDSLHYSVGFRAPT-AAELLSSFLDYLLDKLPGIDERYR 237

Query: 232 RGLPIGYLRYAGLARGK-PVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHD 290
             L       A  A G+   D      A    L    A L+E+           K  +  
Sbjct: 238 DPLL-----RAVQAPGEIDSDEIDRLAAQLSELLRDPALLLEFFGQFLTSPRREK-DIAP 291

Query: 291 ALPPVLSPEELQCSVFENGLRMSQTG 316
           +LPP    +EL+  + E+G  + +  
Sbjct: 292 SLPPF-REDELRDFLAEDGALLVRLS 316

This family contains many hypothetical proteins that belong to the cupin superfamily. Length = 319

>gnl\|CDD\|225406 COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|222269 pfam13621, Cupin_8, Cupin-like domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		339
KOG3706\|consensus		629		100.0
PF08007		319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	100.0
COG2850		383	Uncharacterized conserved protein [Function unknow	99.97
PF13621		251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	99.75
KOG2132\|consensus		355		99.29
KOG2131\|consensus		427		98.65
KOG2130\|consensus		407		98.61
PF02373		114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	98.02
KOG2508\|consensus		437		97.34
TIGR03037		159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	96.98
PRK13264		177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	96.72
COG1917		131	Uncharacterized conserved protein, contains double	96.63
PF07883		71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	96.54
COG0662		127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	96.47
PF00190		144	Cupin_1: Cupin; InterPro: IPR006045 This family re	96.24
COG4101		142	Predicted mannose-6-phosphate isomerase [Carbohydr	96.0
COG2140		209	Thermophilic glucose-6-phosphate isomerase and rel	95.63
KOG1633\|consensus		776		95.33
TIGR03404		367	bicupin_oxalic bicupin, oxalate decarboxylase fami	94.91
TIGR03404		367	bicupin_oxalic bicupin, oxalate decarboxylase fami	94.51
PF06052		151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	94.42
smart00835		146	Cupin_1 Cupin. This family represents the conserve	94.38
PF02311		136	AraC_binding: AraC-like ligand binding domain; Int	94.24
PRK15457		233	ethanolamine utilization protein EutQ; Provisional	93.67
PRK04190		191	glucose-6-phosphate isomerase; Provisional	93.6
PRK13290		125	ectC L-ectoine synthase; Reviewed	91.09
PF05523		131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	90.92
TIGR03214		260	ura-cupin putative allantoin catabolism protein. T	90.73
PRK09943		185	DNA-binding transcriptional repressor PuuR; Provis	89.42
PF06560		182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	88.37
PF01050		151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	88.18
PRK13502		282	transcriptional activator RhaR; Provisional	88.15
smart00558		57	JmjC A domain family that is part of the cupin met	87.99
PRK13500		312	transcriptional activator RhaR; Provisional	87.63
TIGR02272		335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	87.6
PRK10296		278	DNA-binding transcriptional regulator ChbR; Provis	87.05
TIGR01479		468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	86.83
TIGR03214		260	ura-cupin putative allantoin catabolism protein. T	86.54
PRK11171		266	hypothetical protein; Provisional	85.3
PRK15401		213	alpha-ketoglutarate-dependent dioxygenase AlkB; Pr	85.28
PF04970		125	LRAT: Lecithin retinol acyltransferase; InterPro:	85.09
PLN00212		493	glutelin; Provisional	84.57
KOG2132\|consensus		355		83.33
PF05899		74	Cupin_3: Protein of unknown function (DUF861); Int	82.9
PF03079		157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	82.87
PRK15460		478	cpsB mannose-1-phosphate guanyltransferase; Provis	82.58
PRK10371		302	DNA-binding transcriptional regulator MelR; Provis	82.56
PF02041		167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	82.55
TIGR00568		169	alkb DNA alkylation damage repair protein AlkB. Pr	81.69
TIGR02297		287	HpaA 4-hydroxyphenylacetate catabolism regulatory	81.26
COG3837		161	Uncharacterized conserved protein, contains double	80.1

>KOG3706\|consensus	Back alignment and domain information

Probab=100.00  E-value=4.5e-90  Score=674.11  Aligned_cols=332  Identities=43%  Similarity=0.788  Sum_probs=318.7

Q ss_pred             CCccccceeeccCCcCccCCCCCHHHHHHHHhhCCcccccccceEEeeCCcccccCCCccCChhhhhhhhccccceeecC
Q psy13797          1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRALPQIVWDHYREGCSIRFLN   80 (339)
Q Consensus         1 ~yWekkPl~i~~~~~~~~~~l~s~~dl~~lL~~~~l~~~~~i~v~~y~~g~~~~~~~~g~~~~~~~~~~~~~G~tl~l~~   80 (339)
                      +|||+++|+|+|.+|.||++|||.++|++||.++.++|++|+|+++|+||+|+++||+||+.|..+|.+|++||||+|.|
T Consensus       215 ~fwe~~allVqR~dptYfgslfsta~Ldell~r~hl~ygrnvnvarykNGkRetLN~~GRA~p~av~~f~q~~cSiqlln  294 (629)
T KOG3706|consen  215 EFWEQKALLVQRDDPTYFGSLFSTADLDELLSRGHLYYGRNVNVARYKNGKRETLNPDGRALPLAVWKFYQKGCSIQLLN  294 (629)
T ss_pred             HHHhccceEEeccCccHHhhhhhHhhHHHHHhhcceeecccccceeeecCcceecCCccccchHHHHHHHhcCceEEeeC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCchHHHHHHHHHHHhcCcccceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCC
Q psy13797         81 PQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQE  160 (339)
Q Consensus        81 ~~~~~~~l~~~~~~Le~~~g~~v~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~  160 (339)
                      ||+|...||++|..||++|||+||+|+|+||+|||||+||||++++||+|++|+|+||||.|..+...++..+++||+++
T Consensus       295 Pqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~ee  374 (629)
T KOG3706|consen  295 PQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEE  374 (629)
T ss_pred             chhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChh
Confidence            99999999999999999999999999999999999999999999999999999999999999887778999999999999


Q ss_pred             cCCCCcEEEEEcCCCeeeeCCCceeeeecCCCcceeeeeecccccccHHHHHHHHHHHHHHHHccCCHHHHhcCCcchhh
Q psy13797        161 EIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLR  240 (339)
Q Consensus       161 ~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~~~SlhlT~~~~~~~sw~dll~~~l~~~l~~~~~~d~~~R~~lp~~~~~  240 (339)
                      ++|+|.++++|+|||+||||||++|||.+.+..||+|+|+|+||+++|+|||+.++|.++..++.++.+||++||+++++
T Consensus       375 dlgePV~e~vle~GDllYfPRG~IHQA~t~~~vHSlHvTlStyqq~s~anlle~~ip~av~~a~d~~velRrGLP~~~fq  454 (629)
T KOG3706|consen  375 DLGEPVHEFVLEPGDLLYFPRGTIHQADTPALVHSLHVTLSTYQQNSWANLLEDTIPGAVFDAADEDVELRRGLPRGLFQ  454 (629)
T ss_pred             HhCCchHHhhcCCCcEEEecCcceeeccccchhceeEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhhHHhhCCChhHHH
Confidence            99999999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             ccCccCCCCCChHHHHHHHHHHHHHHHHHHhhccC--ChhhHHHHHHHhhhhcCCCCCCcchhccccccCCccccccCCc
Q psy13797        241 YAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVD--LDDGVDEMGKQLMHDALPPVLSPEELQCSVFENGLRMSQTGEV  318 (339)
Q Consensus       241 ~~g~~~~~~~~~~~~r~~~~~~l~~l~~~l~~~~~--~~~a~d~~~~~f~~~~lPp~~~~~e~~~~~~~~~~~~~~~~~~  318 (339)
                      ++|..+++...  .+|  |.++++.|++++....+  +|.++|+|||+|||++|||++++.|+.+||+|..   ..++++
T Consensus       455 ~lg~~~~d~~~--~~r--lvekvr~lvdr~~~~~e~~vd~~vdqmaKdFih~aLPP~lt~~e~~lSv~G~a---~e~ln~  527 (629)
T KOG3706|consen  455 LLGQVESDTVA--TRR--LVEKVRTLVDRLEGTKENLVDLLVDQMAKDFIHHALPPYLTGDEAELSVPGGA---LERLNS  527 (629)
T ss_pred             HhChhccCCcc--HHH--HHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHhcCCCcccCccceeeccccc---CCCccc
Confidence            99999998876  665  99999999999986665  8899999999999999999999999999999862   234778


Q ss_pred             ccceecCCCCcEEEEeCCccC
Q psy13797        319 YNATQITKDTKVRLVRANAVR  339 (339)
Q Consensus       319 ~~~~~~~~~t~~rl~r~~~~r  339 (339)
                      ++..++|..|.|||||.+++|
T Consensus       528 v~~~qft~~t~vrllr~~iqr  548 (629)
T KOG3706|consen  528 VVRLQFTDHTVVRLLRDQIQR  548 (629)
T ss_pred             eeeeeeccceEEEehhhhhHH
Confidence            888899999999999999987

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors	Back alignment and domain information

>COG2850 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A	Back alignment and domain information

>KOG2132\|consensus	Back alignment and domain information

>KOG2131\|consensus	Back alignment and domain information

>KOG2130\|consensus	Back alignment and domain information

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []	Back alignment and domain information

>KOG2508\|consensus	Back alignment and domain information

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	Back alignment and domain information

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional	Back alignment and domain information

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)	Back alignment and domain information

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)	Back alignment and domain information

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]	Back alignment and domain information

>KOG1633\|consensus	Back alignment and domain information

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family	Back alignment and domain information

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family	Back alignment and domain information

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1	Back alignment and domain information

>smart00835 Cupin_1 Cupin	Back alignment and domain information

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC	Back alignment and domain information

>PRK15457 ethanolamine utilization protein EutQ; Provisional	Back alignment and domain information

>PRK04190 glucose-6-phosphate isomerase; Provisional	Back alignment and domain information

>PRK13290 ectC L-ectoine synthase; Reviewed	Back alignment and domain information

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []	Back alignment and domain information

>TIGR03214 ura-cupin putative allantoin catabolism protein	Back alignment and domain information

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional	Back alignment and domain information

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5	Back alignment and domain information

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5	Back alignment and domain information

>PRK13502 transcriptional activator RhaR; Provisional	Back alignment and domain information

>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily	Back alignment and domain information

>PRK13500 transcriptional activator RhaR; Provisional	Back alignment and domain information

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase	Back alignment and domain information

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional	Back alignment and domain information

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	Back alignment and domain information

>TIGR03214 ura-cupin putative allantoin catabolism protein	Back alignment and domain information

>PRK11171 hypothetical protein; Provisional	Back alignment and domain information

>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional	Back alignment and domain information

>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes	Back alignment and domain information

>PLN00212 glutelin; Provisional	Back alignment and domain information

>KOG2132\|consensus	Back alignment and domain information

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown	Back alignment and domain information

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []	Back alignment and domain information

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional	Back alignment and domain information

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional	Back alignment and domain information

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)	Back alignment and domain information

>TIGR00568 alkb DNA alkylation damage repair protein AlkB	Back alignment and domain information

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA	Back alignment and domain information

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		339
4e4h_A		463	Crystal Structure Of Histone Demethylase No66 Lengt		1e-83
4diq_A		489	Crystal Structure Of Human No66 Length = 489		2e-83
2xdv_A		442	Crystal Structure Of The Catalytic Domain Of Flj143		4e-38
1vrb_A		342	Crystal Structure Of Putative Asparaginyl Hydroxyla		4e-04

>pdb|4E4H|A Chain A, Crystal Structure Of Histone Demethylase No66 Length = 463

Back alignment and structure

Iteration: 1

Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 147/337 (43%), Positives = 208/337 (61%), Gaps = 2/337 (0%) Query: 3 WEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRAL 62 WE+E + + R+ YY L ++ +D +LR+ ++F +++D Y +G+R+T++ GRAL Sbjct: 45 WEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRAL 104 Query: 63 PQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYD 122 P W Y+ GCS+R L PQ + + Q A LQE FG G+N Y TPP +QGFAPHYD Sbjct: 105 PAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYD 164 Query: 123 DIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLPRG 182 DIEAF+LQLEG+K W+VY PR E L SSPNFSQ+++G P+L LEPGDLLY PRG Sbjct: 165 DIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRG 224 Query: 183 YIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLRYA 242 +IHQA HSLH+T+S YQ+ W D LE +P A+QAA ++EFRRGLP ++ Y Sbjct: 225 FIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYM 284 Query: 243 GLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEELQ 302 G D + R A E ++ L+A+L + +D D+ K +HD+LPPVL+ E Sbjct: 285 GAQHSDSKDPR--RTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERA 342 Query: 303 CSVFENGLRMSQTGEVYNATQITKDTKVRLVRANAVR 339 SV+ +R V Q+T +T+V +++ R Sbjct: 343 LSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIAR 379

PyMOL of 4e4h

>pdb|4DIQ|A Chain A, Crystal Structure Of Human No66 Length = 489

Back alignment and structure

>pdb|2XDV|A Chain A, Crystal Structure Of The Catalytic Domain Of Flj14393 Length = 442

Back alignment and structure

>pdb|1VRB|A Chain A, Crystal Structure Of Putative Asparaginyl Hydroxylase (2636534) From Bacillus Subtilis At 2.60 A Resolution Length = 342

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		339
4diq_A		489	Lysine-specific demethylase NO66; structural genom	1e-94
2xdv_A		442	MYC-induced nuclear antigen; ribosome biogenesis,	4e-67
1vrb_A		342	Putative asparaginyl hydroxylase; 2636534, structu	1e-54
3uyj_A		248	Lysine-specific demethylase 8; jellyroll-like all	3e-11
3d8c_A		349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	7e-11
3al5_A		338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	3e-10
3k2o_A		336	Bifunctional arginine demethylase and lysyl-hydro	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
3kv9_A		397	JMJC domain-containing histone demethylation prote	8e-05
3k3o_A		371	PHF8, PHD finger protein 8; histone demethylase, c	2e-04
3pua_A		392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	3e-04

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} Length = 489	Back alignment and structure

 Score =  289 bits (739), Expect = 1e-94
 Identities = 147/339 (43%), Positives = 207/339 (61%), Gaps = 2/339 (0%)

Query: 1   DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGR 60
             WE+E + + R+   YY  L ++  +D +LR+  ++F +++D   Y +G+R+T++  GR
Sbjct: 62  RLWEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGR 121

Query: 61  ALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPH 120
           ALP   W  Y+ GCS+R L PQ +   + Q  A LQE FG   G+N Y TPP +QGFAPH
Sbjct: 122 ALPAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPH 181

Query: 121 YDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQEEIGTPILTVTLEPGDLLYLP 180
           YDDIEAF+LQLEG+K W+VY PR   E L   SSPNFSQ+++G P+L   LEPGDLLY P
Sbjct: 182 YDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFP 241

Query: 181 RGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLR 240
           RG+IHQA      HSLH+T+S YQ+  W D LE  +P A+QAA   ++EFRRGLP  ++ 
Sbjct: 242 RGFIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMD 301

Query: 241 YAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEE 300
           Y G       D    R A  E ++ L+A+L  +  +D   D+  K  +HD+LPPVL+  E
Sbjct: 302 YMGAQHSDSKD--PRRTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRE 359

Query: 301 LQCSVFENGLRMSQTGEVYNATQITKDTKVRLVRANAVR 339
              SV+   +R      V    Q+T +T+V +++    R
Sbjct: 360 RALSVYGLPIRWEAGEPVNVGAQLTTETEVHMLQDGIAR 398

PyMOL of 4diq

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens} Length = 442	Back alignment and structure

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Length = 342	Back alignment and structure

>3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold, nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB: 4aap_A* Length = 248	Back alignment and structure

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Length = 349	Back alignment and structure

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Length = 338	Back alignment and structure

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397	Back alignment and structure

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371	Back alignment and structure

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		339
4diq_A		489	Lysine-specific demethylase NO66; structural genom	100.0
2xdv_A		442	MYC-induced nuclear antigen; ribosome biogenesis,	100.0
1vrb_A		342	Putative asparaginyl hydroxylase; 2636534, structu	100.0
4gjz_A		235	Lysine-specific demethylase 8; JMJC, beta barrel,	99.87
3al5_A		338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	99.79
3d8c_A		349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	99.72
3k2o_A		336	Bifunctional arginine demethylase and lysyl-hydro	99.55
2yu1_A		451	JMJC domain-containing histone demethylation PROT;	99.3
3kv5_D		488	JMJC domain-containing histone demethylation prote	99.29
3k3o_A		371	PHF8, PHD finger protein 8; histone demethylase, c	99.27
3kv9_A		397	JMJC domain-containing histone demethylation prote	99.25
3kv4_A		447	PHD finger protein 8; epigenetics, histone CODE, c	99.21
3pua_A		392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	99.15
3pur_A		528	Lysine-specific demethylase 7 homolog; oxidoreduct	98.95
4e2g_A		126	Cupin 2 conserved barrel domain protein; MCSG, PSI	96.46
3l2h_A		162	Putative sugar phosphate isomerase; AFE_0303, stru	96.4
1yfu_A		174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	96.31
4i4a_A		128	Similar to unknown protein; structural genomics, P	96.29
3lwc_A		119	Uncharacterized protein; structural genomics, unkn	96.16
2ozj_A		114	Cupin 2, conserved barrel; cupin superfamily prote	96.15
3fjs_A		114	Uncharacterized protein with RMLC-like cupin fold;	96.13
1yhf_A		115	Hypothetical protein SPY1581; structural genomics,	96.11
2ypd_A		392	Probable JMJC domain-containing histone demethyla	96.01
1v70_A		105	Probable antibiotics synthesis protein; structural	95.98
3ibm_A		167	Cupin 2, conserved barrel domain protein; cupin 2	95.76
3h8u_A		125	Uncharacterized conserved protein with double-STR	95.76
3fz3_A		531	Prunin; TREE NUT allergen, allergy, amandin, almon	95.72
2o8q_A		134	Hypothetical protein; cpuin-like fold, structural	95.72
1zvf_A		176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	95.67
1dgw_A		178	Canavalin; duplicated swiss-roll beta barrels, loo	95.67
3rns_A		227	Cupin 2 conserved barrel domain protein; structura	95.47
3d82_A		102	Cupin 2, conserved barrel domain protein; structur	95.47
1fxz_A		476	Glycinin G1; proglycinin, legumin, SEED storage pr	95.46
2b8m_A		117	Hypothetical protein MJ0764; structural genomics,	95.46
2gu9_A		113	Tetracenomycin polyketide synthesis protein; X-RAY	95.45
3i7d_A		163	Sugar phosphate isomerase; YP_168127.1, structural	95.31
2xxz_A		332	Lysine-specific demethylase 6B; oxidoreductase, hi	95.27
2oa2_A		148	BH2720 protein; 10175341, structural genomics, joi	95.24
2vqa_A		361	SLL1358 protein, MNCA; periplasmic binding protein	95.23
3kgz_A		156	Cupin 2 conserved barrel domain protein; metallopr	95.22
3c3v_A		510	Arachin ARAH3 isoform; peanut allergen, allergy, g	95.22
2fqp_A		97	Hypothetical protein BP2299; double-stranded beta-	95.19
1x82_A		190	Glucose-6-phosphate isomerase; cupin superfamily,	95.14
2pfw_A		116	Cupin 2, conserved barrel domain protein; cupin do	95.13
3ht1_A		145	REMF protein; cupin fold, Zn-binding, antibiotic b	95.06
2d5f_A		493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	95.01
3s57_A		204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	94.96
1lr5_A		163	Auxin binding protein 1; beta jellyroll, double st	94.89
1fi2_A		201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	94.89
1vr3_A		191	Acireductone dioxygenase; 13543033, structural gen	94.89
1y9q_A		192	Transcriptional regulator, HTH_3 family; transcrip	94.83
3jzv_A		166	Uncharacterized protein RRU_A2000; structural geno	94.71
2qnk_A		286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	94.67
3cew_A		125	Uncharacterized cupin protein; all beta-protein, j	94.63
3ksc_A		496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	94.62
4ask_A		510	Lysine-specific demethylase 6B; oxidoreductase, KD	94.61
2f4p_A		147	Hypothetical protein TM1010; double-stranded beta-	94.6
3avr_A		531	Lysine-specific demethylase 6A; cupin superfamily,	94.57
2i45_A		107	Hypothetical protein; neisseria meningitidis cupin	94.53
2vqa_A		361	SLL1358 protein, MNCA; periplasmic binding protein	94.42
2vpv_A		166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	94.32
2bnm_A		198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	94.29
2e9q_A		459	11S globulin subunit beta; cucubitin, pumpkin SEED	94.23
1vj2_A		126	Novel manganese-containing cupin TM1459; structura	94.21
2opk_A		112	Hypothetical protein; putative mannose-6-phosphate	94.1
3bcw_A		123	Uncharacterized protein; structural genomics, join	94.03
3kgl_A		466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	94.02
2xlg_A		239	SLL1785 protein, CUCA; metal binding protein, cupi	93.88
4b29_A		217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	93.79
3bu7_A		394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	93.78
2q30_A		110	Uncharacterized protein; double-stranded beta-heli	93.74
1o4t_A		133	Putative oxalate decarboxylase; double-stranded be	93.66
2ea7_A		434	7S globulin-1; beta barrel, cupin superfamily, pla	93.55
3qac_A		465	11S globulin SEED storage protein; 11S SEED storag	93.5
1y3t_A		337	Hypothetical protein YXAG; BI cupin, dioxygenase,	93.45
1j58_A		385	YVRK protein; cupin, decarboxyklase, oxalate, mang	93.45
1uij_A		416	Beta subunit of beta conglycinin; double-stranded	93.42
3i3q_A		211	Alpha-ketoglutarate-dependent dioxygenase ALKB; be	93.42
3h7j_A		243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	93.24
1y3t_A		337	Hypothetical protein YXAG; BI cupin, dioxygenase,	93.23
1j58_A		385	YVRK protein; cupin, decarboxyklase, oxalate, mang	93.21
2d40_A		354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	93.21
1juh_A		350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	93.0
3h7j_A		243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	92.96
2y0o_A		175	Probable D-lyxose ketol-isomerase; carbohydrate me	92.89
1juh_A		350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	92.84
3rns_A		227	Cupin 2 conserved barrel domain protein; structura	92.83
4axo_A		151	EUTQ, ethanolamine utilization protein; structural	92.79
3lag_A		98	Uncharacterized protein RPA4178; functionally unkn	92.7
2d40_A		354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	92.44
1zrr_A		179	E-2/E-2' protein; nickel, cupin, beta helix, methi	92.43
1o5u_A		101	Novel thermotoga maritima enzyme TM1112; cupin, st	92.38
3d0j_A		140	Uncharacterized protein CA_C3497; beta-barrel, str	92.2
2pyt_A		133	Ethanolamine utilization protein EUTQ; structural	92.06
3nw4_A		368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	92.03
3dxt_A		354	JMJC domain-containing histone demethylation PROT;	91.98
2gm6_A		208	Cysteine dioxygenase type I; structural genomics,	91.65
4h7l_A		157	Uncharacterized protein; structural genomics, PSI-	91.51
3eqe_A		171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	91.29
2phl_A		397	Phaseolin; plant SEED storage protein(vicilin); HE	91.1
2pa7_A		141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	91.07
2cav_A		445	Protein (canavalin); vicilin, 7S SEED protein, dom	90.69
2qnk_A		286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	90.45
3st7_A		369	Capsular polysaccharide synthesis enzyme CAP5F; ro	90.1
1sfn_A		246	Conserved hypothetical protein; structural genomic	89.7
1rc6_A		261	Hypothetical protein YLBA; structural genomics, NY	89.35
1uij_A		416	Beta subunit of beta conglycinin; double-stranded	89.17
2iuw_A		238	Alkylated repair protein ALKB homolog 3; oxidoredu	89.11
2ozi_A		98	Hypothetical protein RPA4178; APC6210, putative pr	88.78
1rc6_A		261	Hypothetical protein YLBA; structural genomics, NY	88.76
3bu7_A		394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	88.73
1sq4_A		278	GLXB, glyoxylate-induced protein; structural genom	88.69
1sef_A		274	Conserved hypothetical protein; structural genomic	88.3
2cav_A		445	Protein (canavalin); vicilin, 7S SEED protein, dom	87.96
2ea7_A		434	7S globulin-1; beta barrel, cupin superfamily, pla	87.96
1sef_A		274	Conserved hypothetical protein; structural genomic	87.93
3opt_A		373	DNA damage-responsive transcriptional repressor R;	87.78
3es1_A		172	Cupin 2, conserved barrel domain protein; YP_00116	87.53
2lkt_A		125	Retinoic acid receptor responder protein 3; TIG3,	87.49
3eln_A		200	Cysteine dioxygenase type 1; peroxysulfenate, non-	87.23
2e9q_A		459	11S globulin subunit beta; cucubitin, pumpkin SEED	86.97
1sfn_A		246	Conserved hypothetical protein; structural genomic	86.77
3ejk_A		174	DTDP sugar isomerase; YP_390184.1, structural geno	86.37
1fxz_A		476	Glycinin G1; proglycinin, legumin, SEED storage pr	86.29
3s7i_A		418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	85.65
3nw4_A		368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	85.55
3uss_A		211	Putative uncharacterized protein; cupin, three his	84.22
2d5f_A		493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	84.16
2arc_A		164	ARAC, arabinose operon regulatory protein; transcr	83.57
1zx5_A		300	Mannosephosphate isomerase, putative; STRU genomic	82.76
1sq4_A		278	GLXB, glyoxylate-induced protein; structural genom	82.61
3qac_A		465	11S globulin SEED storage protein; 11S SEED storag	82.46
3es4_A		116	Uncharacterized protein DUF861 with A RMLC-like C;	82.05
2phl_A		397	Phaseolin; plant SEED storage protein(vicilin); HE	82.05
1qwr_A		319	Mannose-6-phosphate isomerase; structural genomics	81.61
3bb6_A		127	Uncharacterized protein YEAR; structural genomics,	81.55
3s7i_A		418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	81.1
3ebr_A		159	Uncharacterized RMLC-like cupin; structural genomi	80.41

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=8.4e-85  Score=655.02  Aligned_cols=336  Identities=44%  Similarity=0.826  Sum_probs=320.8

Q ss_pred             CCccccceeeccCCcCccCCCCCHHHHHHHHhhCCcccccccceEEeeCCcccccCCCccCChhhhhhhhccccceeecC
Q psy13797          1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGRALPQIVWDHYREGCSIRFLN   80 (339)
Q Consensus         1 ~yWekkPl~i~~~~~~~~~~l~s~~dl~~lL~~~~l~~~~~i~v~~y~~g~~~~~~~~g~~~~~~~~~~~~~G~tl~l~~   80 (339)
                      +|||||||+|||+.|+||.+|||+++|++|+++++++++.++++++|++|+++++|+.|+++++++|++|.+|||++|++
T Consensus        62 ~yWqKkPLlIr~~~p~~f~~L~S~~~l~~Ll~~~~v~~g~~v~~~~y~~g~~~~~n~~g~~~p~~vw~ll~~G~Tl~L~~  141 (489)
T 4diq_A           62 RLWEREAVLVRRQDHTYYQGLFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLLC  141 (489)
T ss_dssp             HTTTTCCEEECCSCTTTTTTSCCHHHHHHHHHHSCCBBTTTEEEEEEETTEEEECCCSSBCCHHHHHHHHHTTCEEEESC
T ss_pred             HHHhhCcEEEecCCcccccCCCCHHHHHHHHHhcCcccCcccceEEEeCCeeEeeCCCCccCHHHHHHHHhCCCeEEECC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCchHHHHHHHHHHHhcCcccceEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCCCCCCCCC
Q psy13797         81 PQTYIKPLQQLNASLQELFGCFVGANTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYSSPNFSQE  160 (339)
Q Consensus        81 ~~~~~~~l~~~~~~Le~~~g~~v~~n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~~~~~~~~  160 (339)
                      +++|+|.+|++++.||++|||+|++|+|+||+|++||++|||++|||++|++|+|+|+||+|......+|+.++.+|.+.
T Consensus       142 ~~~f~p~l~~l~~~Le~~fg~~v~~N~Y~tp~Gs~g~~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~  221 (489)
T 4diq_A          142 PQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQD  221 (489)
T ss_dssp             GGGTCHHHHHHHHHHHHHHTSCEEEEEEEECSSBCCSCCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGG
T ss_pred             hhhcChHHHHHHHHHHHHhCCcccceEEecCCCcccccCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999876556888888999888


Q ss_pred             cCCCCcEEEEEcCCCeeeeCCCceeeeecCCCcceeeeeecccccccHHHHHHHHHHHHHHHHccCCHHHHhcCCcchhh
Q psy13797        161 EIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAAGATDLEFRRGLPIGYLR  240 (339)
Q Consensus       161 ~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~~~SlhlT~~~~~~~sw~dll~~~l~~~l~~~~~~d~~~R~~lp~~~~~  240 (339)
                      +.+++.++++|+|||+||||+||||++++.++++|+|+|||+++.++|+|+++++++.+++.++++|++||++||++|++
T Consensus       222 ~~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~~~tw~dll~~ll~~al~~a~~~d~~~R~~LP~~~~~  301 (489)
T 4diq_A          222 DLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMD  301 (489)
T ss_dssp             GCCCCSEEEEECTTCEEEECTTCEEEEEBCSSCCEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHHCGGGGSBCCTTGGG
T ss_pred             cccCcceEEEECCCCEEEECCCCceEEEecCCCceEEEeecccCcccHHHHHHHHHHHHHHHHHhcCHHhhccCChhHHh
Confidence            88899999999999999999999999999978999999999998899999999999999999999999999999999999


Q ss_pred             ccCccCCCCCChHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHhhhhcCCCCCCcchhccccccCCccccccCCccc
Q psy13797        241 YAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDGVDEMGKQLMHDALPPVLSPEELQCSVFENGLRMSQTGEVYN  320 (339)
Q Consensus       241 ~~g~~~~~~~~~~~~r~~~~~~l~~l~~~l~~~~~~~~a~d~~~~~f~~~~lPp~~~~~e~~~~~~~~~~~~~~~~~~~~  320 (339)
                      +||+.++|..+  ++|+.|.+++++|+++|.++.++|+|+|+|+++|++++|||+++++|+.+||+|.+.+|.. |++++
T Consensus       302 ~~g~~~~d~~~--~~r~~~~~~~~~l~~~l~~~~~~d~a~d~~~k~f~~~~lPP~l~~~e~~~~v~g~~~~~~~-~~~~~  378 (489)
T 4diq_A          302 YMGAQHSDSKD--PRRTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVYGLPIRWEA-GEPVN  378 (489)
T ss_dssp             TCSGGGTTCCC--HHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHSCCCCCCHHHHHTSGGGCCCCEET-TEEC-
T ss_pred             hcCccccCccc--HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhcCCCCCCchhhhccccCCcccccC-Ccccc
Confidence            99999999877  8999999999999999999999999999999999999999999999999999999998886 55654


Q ss_pred             c-eecCCCCcEEEEeCCccC
Q psy13797        321 A-TQITKDTKVRLVRANAVR  339 (339)
Q Consensus       321 ~-~~~~~~t~~rl~r~~~~r  339 (339)
                      . .+|+.+|+|||+|++|+|
T Consensus       379 ~~~~~~~~t~vrl~r~~~~r  398 (489)
T 4diq_A          379 VGAQLTTETEVHMLQDGIAR  398 (489)
T ss_dssp             -CCCCCTTCEEEESCTTSEE
T ss_pred             ccccCCCCceEEEecCCceE
Confidence            4 499999999999999987

PyMOL of 4diq

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}	Back alignment and structure

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11	Back alignment and structure

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*	Back alignment and structure

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*	Back alignment and structure

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...	Back alignment and structure

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*	Back alignment and structure

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A	Back alignment and structure

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*	Back alignment and structure

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*	Back alignment and structure

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*	Back alignment and structure

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}	Back alignment and structure

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*	Back alignment and structure

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*	Back alignment and structure

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}	Back alignment and structure

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}	Back alignment and structure

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*	Back alignment and structure

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}	Back alignment and structure

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}	Back alignment and structure

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}	Back alignment and structure

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}	Back alignment and structure

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9	Back alignment and structure

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}	Back alignment and structure

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A	Back alignment and structure

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}	Back alignment and structure

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}	Back alignment and structure

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A	Back alignment and structure

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}	Back alignment and structure

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20	Back alignment and structure

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A	Back alignment and structure

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}	Back alignment and structure

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}	Back alignment and structure

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A	Back alignment and structure

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18	Back alignment and structure

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A	Back alignment and structure

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}	Back alignment and structure

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}	Back alignment and structure

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}	Back alignment and structure

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}	Back alignment and structure

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}	Back alignment and structure

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}	Back alignment and structure

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}	Back alignment and structure

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*	Back alignment and structure

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}	Back alignment and structure

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A	Back alignment and structure

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*	Back alignment and structure

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*	Back alignment and structure

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A	Back alignment and structure

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6	Back alignment and structure

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15	Back alignment and structure

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}	Back alignment and structure

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A	Back alignment and structure

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}	Back alignment and structure

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}	Back alignment and structure

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*	Back alignment and structure

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9	Back alignment and structure

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*	Back alignment and structure

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}	Back alignment and structure

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}	Back alignment and structure

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}	Back alignment and structure

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A	Back alignment and structure

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A	Back alignment and structure

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10	Back alignment and structure

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}	Back alignment and structure

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}	Back alignment and structure

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}	Back alignment and structure

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A	Back alignment and structure

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}	Back alignment and structure

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23	Back alignment and structure

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}	Back alignment and structure

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9	Back alignment and structure

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A	Back alignment and structure

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}	Back alignment and structure

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*	Back alignment and structure

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A	Back alignment and structure

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*	Back alignment and structure

>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...	Back alignment and structure

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*	Back alignment and structure

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*	Back alignment and structure

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A	Back alignment and structure

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23	Back alignment and structure

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*	Back alignment and structure

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*	Back alignment and structure

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}	Back alignment and structure

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*	Back alignment and structure

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}	Back alignment and structure

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}	Back alignment and structure

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}	Back alignment and structure

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23	Back alignment and structure

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A	Back alignment and structure

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A	Back alignment and structure

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}	Back alignment and structure

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24	Back alignment and structure

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A	Back alignment and structure

>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*	Back alignment and structure

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19	Back alignment and structure

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}	Back alignment and structure

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}	Back alignment and structure

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*	Back alignment and structure

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*	Back alignment and structure

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B	Back alignment and structure

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A	Back alignment and structure

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A	Back alignment and structure

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11	Back alignment and structure

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11	Back alignment and structure

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*	Back alignment and structure

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10	Back alignment and structure

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11	Back alignment and structure

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23	Back alignment and structure

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11	Back alignment and structure

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11	Back alignment and structure

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B	Back alignment and structure

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A	Back alignment and structure

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11	Back alignment and structure

>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*	Back alignment and structure

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}	Back alignment and structure

>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}	Back alignment and structure

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A	Back alignment and structure

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A	Back alignment and structure

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11	Back alignment and structure

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}	Back alignment and structure

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A	Back alignment and structure

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A	Back alignment and structure

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A	Back alignment and structure

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19	Back alignment and structure

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A	Back alignment and structure

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A	Back alignment and structure

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3	Back alignment and structure

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11	Back alignment and structure

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}	Back alignment and structure

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}	Back alignment and structure

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*	Back alignment and structure

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3	Back alignment and structure

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13	Back alignment and structure

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A	Back alignment and structure

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		339
d1vrba1		319	b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla	1e-34
d1h2ka_		335	b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibit	6e-11

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

 Score =  126 bits (318), Expect = 1e-34
 Identities = 53/296 (17%), Positives = 107/296 (36%), Gaps = 36/296 (12%)

Query: 1   DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQRQTMDVEGR 60
           ++W  +PL   R +   + ++   +K+  +     I     + +      + + +     
Sbjct: 17  EYWPVKPLVA-RGEVERFTSIPGFEKVRTLENVLAIYNNPVMVVGDAVIEESEGITDRFL 75

Query: 61  ALPQIVWDHYREGCSIRFLNPQTYIKPLQQLNASLQELFGCFVGANT---YQTPPTAQGF 117
             P    + Y +G ++ F     +I  +++    L+       G ++           GF
Sbjct: 76  VSPAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAGTSSKAIVYAAKNGGGF 135

Query: 118 APHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRY--SSPNFSQEEI------------G 163
             H+D     I Q++G+K WK+     V   +  Y  S   +  +++             
Sbjct: 136 KAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDL 195

Query: 164 TPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKALQAA 223
                V L PG +LYLPRG  H   +     +L++T   + + AW+DL+  A+ K L + 
Sbjct: 196 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNIT---FGQPAWLDLMLAALRKKLIS- 251

Query: 224 GATDLEFRRGLPIGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVEYVDLDDG 279
              D  FR         +            + +  +   L+ L+  L E  +    
Sbjct: 252 ---DNRFRELAVNHQSLHE-----------SSKSELNGYLESLIQTLSENAETLTP 293

PyMOL of d1vrba1

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Length = 335	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		339
d1vrba1		319	Putative asparaginyl hydroxylase YxbC {Bacillus su	100.0
d1h2ka_		335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	99.74
d2b8ma1		108	Hypothetical protein MJ0764 {Archaeon Methanococcu	97.31
d1lr5a_		160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	97.15
d1v70a_		105	Hypothetical protein TTHA0104 {Thermus thermophilu	96.77
d1uija1		170	Seed storage 7S protein {Soybean (Glycine max), be	96.53
d1juha_		348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	96.51
d2f4pa1		134	Hypothetical protein TM1010 {Thermotoga maritima [	96.47
d1yhfa1		112	Hypothetical protein SPy1581 {Streptococcus pyogen	96.4
d1j58a_		372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	96.26
d1fxza2		174	Seed storage 7S protein {Soybean (Glycine max), pr	96.24
d1j58a_		372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	96.21
d2phla2		162	Seed storage 7S protein {French bean (Phaseolus vu	96.16
d1vj2a_		114	Hypothetical protein TM1459 {Thermotoga maritima [	96.04
d1od5a2		173	Seed storage 7S protein {Soybean (Glycine max), gl	95.94
g1dgw.1		168	Seed storage 7S protein {Jack bean (Canavalia ensi	95.92
d1o4ta_		115	Hypothetical protein TM1287 {Thermotoga maritima [	95.88
d2et1a1		201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	95.71
d1uika1		203	Seed storage 7S protein {Soybean (Glycine max), be	95.65
d1y9qa2		99	Probable transcriptional regulator VC1968, C-termi	95.54
d1dgwa_		178	Seed storage 7S protein {Jack bean (Canavalia ensi	95.51
d1uika2		185	Seed storage 7S protein {Soybean (Glycine max), be	95.37
d1zvfa1		175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	94.96
d2d40a1		308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	94.93
d2pyta1		128	Ethanolamine utilization protein EutQ {Salmonella	94.83
d2phda1		351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	94.82
d1yfua1		174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	94.54
d1x82a_		190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	94.16
d1y3ta1		330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	94.06
d2iuwa1		210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	93.96
d1juha_		348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	93.91
d1y3ta1		330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	93.91
d2d40a1		308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	93.36
d1sefa_		250	Hypothetical protein EF2996 {Enterococcus faecalis	93.33
d2phla1		200	Seed storage 7S protein {French bean (Phaseolus vu	93.29
d2bnma2		122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	93.26
d1sefa_		250	Hypothetical protein EF2996 {Enterococcus faecalis	93.0
d1sq4a_		273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	92.92
d1rc6a_		253	Hypothetical protein YlbA {Escherichia coli [TaxId	92.09
d3bu7a1		355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	92.0
d1rc6a_		253	Hypothetical protein YlbA {Escherichia coli [TaxId	91.93
d3bu7a1		355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	91.9
d3bb6a1		109	Uncharacterized protein YeaR {Escherichia coli [Ta	89.78
d2pa7a1		135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	89.47
d1nxma_		194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	88.93
d1sq4a_		273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	88.87
d1zrra1		179	Acireductone dioxygenase {Klebsiella pneumoniae [T	88.52
d1sfna_		245	Hypothetical protein DR1152 {Deinococcus radiodura	88.32
d2phda1		351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	88.26
d1sfna_		245	Hypothetical protein DR1152 {Deinococcus radiodura	88.17
d2fdia1		200	Alkylated DNA repair protein AlkB {Escherichia col	88.13
d3dl3a1		96	Tellurite resistance protein B, TehB {Vibrio fisch	87.71
d1fxza1		239	Seed storage 7S protein {Soybean (Glycine max), pr	85.77
d1zx5a1		299	Putative mannosephosphate isomerase AF0035 {Archae	85.26
d1vr3a1		179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	84.85
d1pmia_		440	Phosphomannose isomerase {Yeast (Candida albicans)	83.53
d2fcta1		308	Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom	83.44
d2gm6a1		192	Cysteine dioxygenase type I {Ralstonia eutropha [T	83.3
d1qwra_		315	Mannose-6-phosphate isomerase ManA {Bacillus subti	82.32
d2ixha1		184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	82.26
d1o5ua_		88	Hypothetical protein TM1112 {Thermotoga maritima [	81.6

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=6.3e-38  Score=293.75  Aligned_cols=250  Identities=21%  Similarity=0.336  Sum_probs=177.4

Q ss_pred             CCccccceeeccCCcCccCCCCCHHHHHHHHhhCCcccccccceEEeeCCc---ccccCCCccCChhhhhhhhcccccee
Q psy13797          1 DHWEKEPLYISRKQKNYYNNLITSKKIDDILRDNVIEFKKNIDITLYEDGQ---RQTMDVEGRALPQIVWDHYREGCSIR   77 (339)
Q Consensus         1 ~yWekkPl~i~~~~~~~~~~l~s~~dl~~lL~~~~l~~~~~i~v~~y~~g~---~~~~~~~g~~~~~~~~~~~~~G~tl~   77 (339)
                      +||+|||++|+++.++ +..+++|++++.+...........  +. ..++.   +......+......+.+++.+|+|+.
T Consensus        17 ~y~~kkPvvir~~~~~-~~a~~~w~~~~~l~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (319)
T d1vrba1          17 EYWPVKPLVARGEVER-FTSIPGFEKVRTLENVLAIYNNPV--MV-VGDAVIEESEGITDRFLVSPAEALEWYEKGAALE   92 (319)
T ss_dssp             HTTTTSCEEECCCGGG-GGGSTTCGGGSSHHHHHHHCCSCE--EE-C-------------CEEECHHHHHHHHHTTCCEE
T ss_pred             HcCCCCCEEEcCCccc-CccccCCccHHHHHHccCccccce--EE-ccCCceeccCCcccccccchHHHHHHHhcCCEEE
Confidence            5999999999997665 467888887666554433332211  11 11111   11111223445677889999999999


Q ss_pred             ecCCcCCCchHHHHHHHHHHHhcCcccc----eEEeCCCCCCCCCCcccCCCcEEEEEEeEEEEEEeCCCCCCCCCCCCC
Q psy13797         78 FLNPQTYIKPLQQLNASLQELFGCFVGA----NTYQTPPTAQGFAPHYDDIEAFILQLEGKKKWKVYLPRMVDEYLPRYS  153 (339)
Q Consensus        78 l~~~~~~~~~l~~~~~~Le~~~g~~v~~----n~Y~tp~gs~gf~~H~D~~dvfvlQl~G~K~W~l~~p~~~~~~lp~~~  153 (339)
                      +++++.+.+.++.++..++..++++.+.    ++|++++|+ |+++|||.+|||++|+.|+|+|+||+|......++...
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~H~D~~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~  171 (319)
T d1vrba1          93 FDFTDLFIPQVRRWIEKLKAELRLPAGTSSKAIVYAAKNGG-GFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYD  171 (319)
T ss_dssp             ECCGGGTCTHHHHHHHHHHHHTTCCTTCCEEEEEEEECSSC-CCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEE
T ss_pred             EechhhcChHHHHHHhhhHHhhcCcccccceeEEEecCCCC-CCccccCCCceeEEeecceEEEEEeCCccccccccCcc
Confidence            9999999999999999999999987764    466666554 78999999999999999999999999987554444311


Q ss_pred             --CC----------CCC--CCcCCCCcEEEEEcCCCeeeeCCCceeeeecCCCcceeeeeecccccccHHHHHHHHHHHH
Q psy13797        154 --SP----------NFS--QEEIGTPILTVTLEPGDLLYLPRGYIHQASTVTNEHSLHVTISVYQKTAWIDLLEKAMPKA  219 (339)
Q Consensus       154 --~~----------~~~--~~~~~~~~~e~~L~pGDvLYiPrG~~H~a~s~~~~~SlhlT~~~~~~~sw~dll~~~l~~~  219 (339)
                        ..          +..  +.....+.++++|+|||+||||+||||+|++.++  |+|+|+++. .++|.|++...    
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGDvLYiP~gw~H~v~s~~~--sis~sv~f~-~~~~~d~~~~~----  244 (319)
T d1vrba1         172 LSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQA--TLALNITFG-QPAWLDLMLAA----  244 (319)
T ss_dssp             CC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCEEEECTTCEEEEECSSC--EEEEEEEEC-CCBHHHHHHHH----
T ss_pred             cccCccccccccccchhhchhhhcCccEEEEECCCCEEEeCCCceEEeEecCC--eEEEEEEec-CCCHHHHHHHH----
Confidence              00          111  1112457899999999999999999999999864  455555543 68999998765    


Q ss_pred             HHHHccCCHHHHhcCCcchhhccCccCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q psy13797        220 LQAAGATDLEFRRGLPIGYLRYAGLARGKPVDIQADRLAMKENLKDLLAKLVEY  273 (339)
Q Consensus       220 l~~~~~~d~~~R~~lp~~~~~~~g~~~~~~~~~~~~r~~~~~~l~~l~~~l~~~  273 (339)
                      +...+.++..+|+.+|....         ..  ...+..+.+.++++++.|.+.
T Consensus       245 ~~~~~~~~~~~r~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~l~~~  287 (319)
T d1vrba1         245 LRKKLISDNRFRELAVNHQS---------LH--ESSKSELNGYLESLIQTLSEN  287 (319)
T ss_dssp             HHHHHTTSGGGGSBCCCTTS---------SC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHhhhcccccccc---------Cc--ccChHHHHHHHHHHHHHHHHH
Confidence            44556789999998875321         01  256778888899998888653

PyMOL of d1vrba1

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}	Back information, alignment and structure

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}	Back information, alignment and structure

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}	Back information, alignment and structure

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}	Back information, alignment and structure

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}	Back information, alignment and structure

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	Back information, alignment and structure

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}	Back information, alignment and structure

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}	Back information, alignment and structure

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}	Back information, alignment and structure

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}	Back information, alignment and structure

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}	Back information, alignment and structure

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}	Back information, alignment and structure

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}	Back information, alignment and structure

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}	Back information, alignment and structure

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}	Back information, alignment and structure

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}	Back information, alignment and structure

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}	Back information, alignment and structure

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}	Back information, alignment and structure

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}	Back information, alignment and structure

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}	Back information, alignment and structure

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}	Back information, alignment and structure

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}	Back information, alignment and structure

>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]}	Back information, alignment and structure

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}	Back information, alignment and structure

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure