Psyllid ID: psy13826

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVKE
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEccccccHHHHHHHHHccccccccccccEEEEEEEEEEEcccccEEEEEEEHHcccccccccccEEEEEEEEccccccHHHHHHHHHHcccccccccEEEEEEEEEEEEEccEEEEEEEEEcccccccHHHHHHHHcccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHEEEEEEEccccccHHHHHHHHHHcccccccccccccEEEccccccccccccccHHHHHHHHcccccccccEEEEEEEEccccccHHHHHHHHHcccccccccccccEEEEEEEEEccccEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
mktmsssgqysySYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRlvstsqpitRKNLLWALVSKmsssgqysySYIFKYIIIGDMGVGKSCLLHQfteqkfmpdcphtigveFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVKE
Flexible Loop (DISEMBL)
mktmsssgqySYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVKE
Low Complexity Region (SEG)
MKTMSSSGQysysyifkyiiiGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVskmsssgqysysyifkyiiiGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVKE
Disordered region (IsUnstruct)
*********YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV*****
Disordered Region (DISOPRED)
*************YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV**
Disordered Region (DISEMBL)
********QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVKE
Disordered Region (DISPRO)
********QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q5R8Z8	215	Ras-related protein Rab-1	yes	N/A	0.543	0.437	0.861	1e-44
Q91V41	215	Ras-related protein Rab-1	yes	N/A	0.543	0.437	0.861	1e-44
P61106	215	Ras-related protein Rab-1	yes	N/A	0.543	0.437	0.861	1e-44
Q5ZKU5	215	Ras-related protein Rab-1	yes	N/A	0.543	0.437	0.861	1e-44
P61107	215	Ras-related protein Rab-1	yes	N/A	0.520	0.418	0.9	2e-44
Q52NJ6	215	Ras-related protein Rab-1	yes	N/A	0.520	0.418	0.9	2e-44
P36410	206	Ras-related protein Rab-1	yes	N/A	0.520	0.436	0.822	1e-41
P56371	218	Ras-related protein Rab-4	no	N/A	0.508	0.403	0.681	7e-33
P20338	218	Ras-related protein Rab-4	no	N/A	0.508	0.403	0.681	7e-33
P05714	218	Ras-related protein Rab-4	no	N/A	0.508	0.403	0.681	7e-33

>sp|Q5R8Z8|RAB14_PONAB Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3

 Score =  179 bits (453), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/94 (86%), Positives = 88/94 (93%)

Query: 77  SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 136
           ++  Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 61

Query: 137 LQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           LQIWDTAGQERFRAVTRSYYRGAAGALMV D++ 
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 95

Involved in membrane trafficking between the Golgi complex and endosomes during early embryonic development. Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. May act by modulating the kinesin KIF16B-cargo association to endosomes.
Pongo abelii (taxid: 9601)

>sp|Q91V41|RAB14_MOUSE Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3

 Score =  179 bits (453), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/94 (86%), Positives = 88/94 (93%)

Query: 77  SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 136
           ++  Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 61

Query: 137 LQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           LQIWDTAGQERFRAVTRSYYRGAAGALMV D++ 
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 95

Involved in membrane trafficking between the Golgi complex and endosomes during early embryonic development. Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. May act by modulating the kinesin KIF16B-cargo association to endosomes.

Mus musculus (taxid: 10090)

>sp|P61106|RAB14_HUMAN Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4

 Score =  179 bits (453), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/94 (86%), Positives = 88/94 (93%)

Query: 77  SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 136
           ++  Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 61

Query: 137 LQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           LQIWDTAGQERFRAVTRSYYRGAAGALMV D++ 
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 95

Involved in membrane trafficking between the Golgi complex and endosomes during early embryonic development. Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. May act by modulating the kinesin KIF16B-cargo association to endosomes.

Homo sapiens (taxid: 9606)

>sp|Q5ZKU5|RAB14_CHICK Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3

 Score =  179 bits (453), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/94 (86%), Positives = 88/94 (93%)

Query: 77  SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 136
           ++  Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 61

Query: 137 LQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           LQIWDTAGQERFRAVTRSYYRGAAGALMV D++ 
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 95

Involved in membrane trafficking between the Golgi complex and endosomes during early embryonic development. Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development.

Gallus gallus (taxid: 9031)

>sp|P61107|RAB14_RAT Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=1 SV=3

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 86/90 (95%)

Query: 81  YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW 140
           Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIW
Sbjct: 6   YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 65

Query: 141 DTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           DTAGQERFRAVTRSYYRGAAGALMV D++ 
Sbjct: 66  DTAGQERFRAVTRSYYRGAAGALMVYDITR 95

Involved in membrane trafficking between the Golgi complex and endosomes during early embryonic development. Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. May act by modulating the kinesin KIF16B-cargo association to endosomes.

Rattus norvegicus (taxid: 10116)

>sp|Q52NJ6|RAB14_PIG Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/90 (90%), Positives = 86/90 (95%)

Query: 81  YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW 140
           Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIW
Sbjct: 6   YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 65

Query: 141 DTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           DTAGQERFRAVTRSYYRGAAGALMV D++ 
Sbjct: 66  DTAGQERFRAVTRSYYRGAAGALMVYDITR 95

Involved in membrane trafficking between the Golgi complex and endosomes during early embryonic development. Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. May act by modulating the kinesin KIF16B-cargo association to endosomes.

Sus scrofa (taxid: 9823)

>sp|P36410|RAB14_DICDI Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2

 Score =  168 bits (426), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/90 (82%), Positives = 83/90 (92%)

Query: 81  YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW 140
           + Y YIFKYIIIGDMGVGKSCLLHQFTE KF+PD PHTIGVEFGTRI++V+ +KIKLQIW
Sbjct: 3   FPYEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIW 62

Query: 141 DTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           DTAGQERFRAVTRSYYRGAAGAL+V D++ 
Sbjct: 63  DTAGQERFRAVTRSYYRGAAGALLVYDITR 92

Regulates the fusion of phagosomes and lysosomes.

Dictyostelium discoideum (taxid: 44689)

>sp|P56371|RAB4A_MOUSE Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=2

 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 76/88 (86%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           +Y ++FK+++IG+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWD
Sbjct: 9   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 68

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQERFR+VTRSYYRGAAGAL+V D++
Sbjct: 69  TAGQERFRSVTRSYYRGAAGALLVYDIT 96

Protein transport. Probably involved in vesicular traffic.

Mus musculus (taxid: 10090)

>sp|P20338|RAB4A_HUMAN Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=3

 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 76/88 (86%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           +Y ++FK+++IG+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWD
Sbjct: 9   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 68

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQERFR+VTRSYYRGAAGAL+V D++
Sbjct: 69  TAGQERFRSVTRSYYRGAAGALLVYDIT 96

Protein transport. Probably involved in vesicular traffic.

Homo sapiens (taxid: 9606)

>sp|P05714|RAB4A_RAT Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=3

 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 76/88 (86%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           +Y ++FK+++IG+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWD
Sbjct: 9   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 68

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQERFR+VTRSYYRGAAGAL+V D++
Sbjct: 69  TAGQERFRSVTRSYYRGAAGALLVYDIT 96

Protein transport. Probably involved in vesicular traffic.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
47205479	702	unnamed protein product [Tetraodon nigro	0.658	0.162	0.75	2e-46
324505695	213	Ras-related protein Rab-14 [Ascaris suum	0.554	0.450	0.885	4e-45
312085696	213	RAB14 protein [Loa loa] gi|307760054|gb|	0.549	0.446	0.894	6e-45
170581209	213	Ras-related protein Rab-14 [Brugia malay	0.549	0.446	0.894	6e-45
391339468	214	PREDICTED: ras-related protein Rab-14-li	0.554	0.448	0.885	9e-45
301299077	217	Rab14 [Aiptasia pulchella]	0.554	0.442	0.864	1e-44
156390648	217	predicted protein [Nematostella vectensi	0.554	0.442	0.864	1e-44
339238789	180	GTP-binding protein yptV4 [Trichinella s	0.537	0.516	0.892	1e-44
357612414	213	Rab-protein 14 [Danaus plexippus]	0.543	0.441	0.893	2e-44
320168221	212	RAB14 protein [Capsaspora owczarzaki ATC	0.520	0.424	0.911	2e-44

>gi|47205479|emb|CAG13667.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/116 (75%), Positives = 101/116 (87%), Gaps = 2/116 (1%)

Query: 56  VSTSQPITRKNL--LWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP 113
           +S S P TR++L     +V  + ++  Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM 
Sbjct: 397 MSLSSPHTRRSLGSRGPVVRAIMTAAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMA 456

Query: 114 DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           DCPHTIGVEFGTRI+EVHG+K+KLQIWDTAGQERFRAVTRSYYRGAAGALMV D++
Sbjct: 457 DCPHTIGVEFGTRIMEVHGQKVKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT 512

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|324505695|gb|ADY42443.1| Ras-related protein Rab-14 [Ascaris suum]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 85/96 (88%), Positives = 91/96 (94%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
           MSS+G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+K
Sbjct: 1   MSSTGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 60

Query: 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           IKLQIWDTAGQERFRAVTRSYYRGAAGALMV D++ 
Sbjct: 61  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 96

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|312085696|ref|XP_003144782.1| RAB14 protein [Loa loa] gi|307760054|gb|EFO19288.1| Ras-like protein Rab-14 [Loa loa]

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/95 (89%), Positives = 91/95 (95%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
           MSS+G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+K
Sbjct: 1   MSSNGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 60

Query: 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           IKLQIWDTAGQERFRAVTRSYYRGAAGALMV D++
Sbjct: 61  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT 95

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|170581209|ref|XP_001895584.1| Ras-related protein Rab-14 [Brugia malayi] gi|158597400|gb|EDP35557.1| Ras-related protein Rab-14, putative [Brugia malayi]

 Score =  185 bits (470), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 85/95 (89%), Positives = 91/95 (95%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
           MSS+G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+K
Sbjct: 1   MSSNGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 60

Query: 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           IKLQIWDTAGQERFRAVTRSYYRGAAGALMV D++
Sbjct: 61  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT 95

Source: Brugia malayi

Species: Brugia malayi

Genus: Brugia

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|391339468|ref|XP_003744071.1| PREDICTED: ras-related protein Rab-14-like [Metaseiulus occidentalis]

 Score =  184 bits (468), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 85/96 (88%), Positives = 90/96 (93%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
           M+ SG Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+K
Sbjct: 1   MTESGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMSDCPHTIGVEFGTRIIEVAGQK 60

Query: 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           IKLQIWDTAGQERFRAVTRSYYRGAAGALMV DV+ 
Sbjct: 61  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDVTR 96

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301299077|gb|ADK66883.1| Rab14 [Aiptasia pulchella]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/96 (86%), Positives = 91/96 (94%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
           M+++G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+K
Sbjct: 1   MAATGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVAGQK 60

Query: 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           IKLQIWDTAGQERFRAVTRSYYRGAAGALMV D++ 
Sbjct: 61  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 96

Source: Aiptasia pulchella

Species: Aiptasia pulchella

Genus: Aiptasia

Family: Aiptasiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|156390648|ref|XP_001635382.1| predicted protein [Nematostella vectensis] gi|156222475|gb|EDO43319.1| predicted protein [Nematostella vectensis]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/96 (86%), Positives = 91/96 (94%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
           M+++G Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+K
Sbjct: 1   MAATGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 60

Query: 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           IKLQIWDTAGQERFRAVTRSYYRGAAGALMV D++ 
Sbjct: 61  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 96

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|339238789|ref|XP_003380949.1| GTP-binding protein yptV4 [Trichinella spiralis] gi|316976091|gb|EFV59434.1| GTP-binding protein yptV4 [Trichinella spiralis]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/93 (89%), Positives = 91/93 (97%)

Query: 77  SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 136
           ++GQY+YS+IFKYIIIGDMGVGKSCLLHQFTE+KFMPDCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   AAGQYNYSFIFKYIIIGDMGVGKSCLLHQFTEKKFMPDCPHTIGVEFGTRIIEVSGQKIK 61

Query: 137 LQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           LQIWDTAGQERFRAVTRSYYRGAAGALMV D++
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT 94

Source: Trichinella spiralis

Species: Trichinella spiralis

Genus: Trichinella

Family: Trichinellidae

Order: Trichocephalida

Class: Enoplea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|357612414|gb|EHJ67983.1| Rab-protein 14 [Danaus plexippus]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/94 (89%), Positives = 89/94 (94%)

Query: 77  SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 136
           SSG Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIK
Sbjct: 2   SSGPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVAGQKIK 61

Query: 137 LQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           LQIWDTAGQERFRAVTRSYYRGAAGALMV D++ 
Sbjct: 62  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 95

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320168221|gb|EFW45120.1| RAB14 protein [Capsaspora owczarzaki ATCC 30864]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/90 (91%), Positives = 88/90 (97%)

Query: 81  YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW 140
           Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KF+PDCPHTIGVEFGTRIIEV+G+KIKLQIW
Sbjct: 4   YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFLPDCPHTIGVEFGTRIIEVNGQKIKLQIW 63

Query: 141 DTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           DTAGQERFRAVTRSYYRGAAGALMV DV+ 
Sbjct: 64  DTAGQERFRAVTRSYYRGAAGALMVYDVTR 93

Source: Capsaspora owczarzaki ATCC 30864

Species: Capsaspora owczarzaki

Genus: Capsaspora

Class: Ichthyosporea

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
UNIPROTKB|Q5ZKU5	215	RAB14 "Ras-related protein Rab	0.445	0.358	0.909	1.1e-34
UNIPROTKB|Q3ZBG1	215	RAB14 "Uncharacterized protein	0.445	0.358	0.909	1.1e-34
UNIPROTKB|E2R0K4	215	RAB14 "Uncharacterized protein	0.445	0.358	0.909	1.1e-34
UNIPROTKB|P61106	215	RAB14 "Ras-related protein Rab	0.445	0.358	0.909	1.1e-34
UNIPROTKB|F2Z5N8	215	RAB14 "Ras-related protein Rab	0.445	0.358	0.909	1.1e-34
UNIPROTKB|Q52NJ6	215	RAB14 "Ras-related protein Rab	0.445	0.358	0.909	1.1e-34
UNIPROTKB|Q5R8Z8	215	RAB14 "Ras-related protein Rab	0.445	0.358	0.909	1.1e-34
MGI|MGI:1915615	215	Rab14 "RAB14, member RAS oncog	0.445	0.358	0.909	1.1e-34
RGD|620881	215	Rab14 "RAB14, member RAS oncog	0.445	0.358	0.909	1.1e-34
WB|WBGene00004276	210	rab-14 [Caenorhabditis elegans	0.445	0.366	0.909	1.1e-34

UNIPROTKB|Q5ZKU5 RAB14 "Ras-related protein Rab-14" [Gallus gallus (taxid:9031)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/77 (90%), Positives = 74/77 (96%)

Query:    93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:   153 RSYYRGAAGALMVIDVS 169
             RSYYRGAAGALMV D++
Sbjct:    78 RSYYRGAAGALMVYDIT 94

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0032456 "endocytic recycling" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0009790 "embryo development" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

GO:0006895 "Golgi to endosome transport" evidence=ISS

UNIPROTKB|Q3ZBG1 RAB14 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/77 (90%), Positives = 74/77 (96%)

Query:    93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:   153 RSYYRGAAGALMVIDVS 169
             RSYYRGAAGALMV D++
Sbjct:    78 RSYYRGAAGALMVYDIT 94

GO:0055037 "recycling endosome" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0032456 "endocytic recycling" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E2R0K4 RAB14 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/77 (90%), Positives = 74/77 (96%)

Query:    93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:   153 RSYYRGAAGALMVIDVS 169
             RSYYRGAAGALMV D++
Sbjct:    78 RSYYRGAAGALMVYDIT 94

GO:0055037 "recycling endosome" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0032456 "endocytic recycling" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61106 RAB14 "Ras-related protein Rab-14" [Homo sapiens (taxid:9606)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/77 (90%), Positives = 74/77 (96%)

Query:    93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:   153 RSYYRGAAGALMVIDVS 169
             RSYYRGAAGALMV D++
Sbjct:    78 RSYYRGAAGALMVYDIT 94

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005795 "Golgi stack" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005769 "early endosome" evidence=ISS

GO:0005770 "late endosome" evidence=ISS

GO:0005764 "lysosome" evidence=ISS

GO:0042175 "nuclear outer membrane-endoplasmic reticulum membrane network" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005791 "rough endoplasmic reticulum" evidence=ISS

GO:0030140 "trans-Golgi network transport vesicle" evidence=ISS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0046907 "intracellular transport" evidence=NAS

GO:0006895 "Golgi to endosome transport" evidence=ISS;TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=NAS

GO:0003924 "GTPase activity" evidence=IDA;NAS

GO:0019003 "GDP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0032456 "endocytic recycling" evidence=IDA

GO:0055037 "recycling endosome" evidence=IDA

GO:0032880 "regulation of protein localization" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA;NAS

UNIPROTKB|F2Z5N8 RAB14 "Ras-related protein Rab-14" [Sus scrofa (taxid:9823)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/77 (90%), Positives = 74/77 (96%)

Query:    93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:   153 RSYYRGAAGALMVIDVS 169
             RSYYRGAAGALMV D++
Sbjct:    78 RSYYRGAAGALMVYDIT 94

GO:0055037 "recycling endosome" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0032456 "endocytic recycling" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q52NJ6 RAB14 "Ras-related protein Rab-14" [Sus scrofa (taxid:9823)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/77 (90%), Positives = 74/77 (96%)

Query:    93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:   153 RSYYRGAAGALMVIDVS 169
             RSYYRGAAGALMV D++
Sbjct:    78 RSYYRGAAGALMVYDIT 94

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0032456 "endocytic recycling" evidence=ISS

GO:0006895 "Golgi to endosome transport" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0031901 "early endosome membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q5R8Z8 RAB14 "Ras-related protein Rab-14" [Pongo abelii (taxid:9601)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/77 (90%), Positives = 74/77 (96%)

Query:    93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:   153 RSYYRGAAGALMVIDVS 169
             RSYYRGAAGALMV D++
Sbjct:    78 RSYYRGAAGALMVYDIT 94

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0006895 "Golgi to endosome transport" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0032456 "endocytic recycling" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=ISS

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0055037 "recycling endosome" evidence=ISS

MGI|MGI:1915615 Rab14 "RAB14, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/77 (90%), Positives = 74/77 (96%)

Query:    93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:   153 RSYYRGAAGALMVIDVS 169
             RSYYRGAAGALMV D++
Sbjct:    78 RSYYRGAAGALMVYDIT 94

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=ISO

GO:0003924 "GTPase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO

GO:0005764 "lysosome" evidence=ISO

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0005770 "late endosome" evidence=ISO

GO:0005791 "rough endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005795 "Golgi stack" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IMP

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007589 "body fluid secretion" evidence=ISO

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0019003 "GDP binding" evidence=ISO

GO:0030133 "transport vesicle" evidence=ISO

GO:0030140 "trans-Golgi network transport vesicle" evidence=ISO

GO:0032456 "endocytic recycling" evidence=ISO

GO:0032880 "regulation of protein localization" evidence=ISO

GO:0042175 "nuclear outer membrane-endoplasmic reticulum membrane network" evidence=ISO

GO:0045176 "apical protein localization" evidence=ISO

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0055037 "recycling endosome" evidence=ISO

GO:0097208 "alveolar lamellar body" evidence=ISO

RGD|620881 Rab14 "RAB14, member RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/77 (90%), Positives = 74/77 (96%)

Query:    93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:   153 RSYYRGAAGALMVIDVS 169
             RSYYRGAAGALMV D++
Sbjct:    78 RSYYRGAAGALMVYDIT 94

GO:0000139 "Golgi membrane" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=ISO;ISS;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA;ISO;ISS

GO:0005622 "intracellular" evidence=ISO

GO:0005764 "lysosome" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO;ISS;NAS

GO:0006895 "Golgi to endosome transport" evidence=IEA;ISO;ISS;TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA;NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0007589 "body fluid secretion" evidence=IMP

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IEA;ISO;ISS

GO:0009790 "embryo development" evidence=IEA;ISO;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0019003 "GDP binding" evidence=IEA;ISO;ISS

GO:0030133 "transport vesicle" evidence=IDA

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0032456 "endocytic recycling" evidence=IEA;ISO;ISS

GO:0032880 "regulation of protein localization" evidence=IEA;ISO;IDA;IMP

GO:0042175 "nuclear outer membrane-endoplasmic reticulum membrane network" evidence=IDA

GO:0045176 "apical protein localization" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=ISO;ISS

GO:0046907 "intracellular transport" evidence=NAS

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0055037 "recycling endosome" evidence=IEA;ISO;ISS

GO:0097208 "alveolar lamellar body" evidence=IDA

WB|WBGene00004276 rab-14 [Caenorhabditis elegans (taxid:6239)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 70/77 (90%), Positives = 74/77 (96%)

Query:    93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
             GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct:    18 GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 77

Query:   153 RSYYRGAAGALMVIDVS 169
             RSYYRGAAGALMV D++
Sbjct:    78 RSYYRGAAGALMVYDIT 94

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005769 "early endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0090390 "phagosome acidification involved in apoptotic cell clearance" evidence=IGI;IMP

GO:0090387 "phagolysosome assembly involved in apoptotic cell clearance" evidence=IGI;IMP

GO:0045335 "phagocytic vesicle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q91V41	RAB14_MOUSE	No assigned EC number	0.8617	0.5433	0.4372	yes	N/A
P61106	RAB14_HUMAN	No assigned EC number	0.8617	0.5433	0.4372	yes	N/A
P61107	RAB14_RAT	No assigned EC number	0.9	0.5202	0.4186	yes	N/A
Q5R8Z8	RAB14_PONAB	No assigned EC number	0.8617	0.5433	0.4372	yes	N/A
Q5ZKU5	RAB14_CHICK	No assigned EC number	0.8617	0.5433	0.4372	yes	N/A
P36410	RAB14_DICDI	No assigned EC number	0.8222	0.5202	0.4368	yes	N/A
Q38922	RAB1B_ARATH	No assigned EC number	0.6966	0.5144	0.4218	yes	N/A
P17609	YPT2_SCHPO	No assigned EC number	0.5824	0.5260	0.455	yes	N/A
P51996	YPT32_YEAST	No assigned EC number	0.6292	0.5144	0.4009	yes	N/A
Q52NJ6	RAB14_PIG	No assigned EC number	0.9	0.5202	0.4186	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	8e-64
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	4e-52
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-50
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-48
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	6e-47
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	8e-44
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-43
pfam00071	162	pfam00071, Ras, Ras family	3e-43
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-38
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	8e-36
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-35
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-35
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	5e-35
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-33
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	3e-33
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-33
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-30
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-29
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-29
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-28
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-27
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-27
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	6e-27
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-26
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	3e-26
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	7e-26
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	8e-24
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-23
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-22
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-22
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	6e-22
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-21
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-21
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	9e-18
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-17
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	8e-17
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	6e-15
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-14
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-14
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-14
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-14
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-13
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	8e-13
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	8e-13
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	5e-12
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	6e-12
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-11
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-11
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	3e-11
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-10
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-10
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-10
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-10
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-10
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-09
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-09
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-09
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-09
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-09
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	5e-09
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	6e-09
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	6e-09
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	8e-09
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-08
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-08
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	4e-08
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	5e-08
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-08
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	8e-08
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	8e-08
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-07
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-07
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-07
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-07
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-07
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	3e-07
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	3e-07
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	4e-07
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	4e-07
pfam00071	162	pfam00071, Ras, Ras family	5e-07
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	6e-07
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	9e-07
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	9e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	1e-06
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	1e-06
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	1e-06
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	3e-06
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	4e-06
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	5e-06
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	6e-06
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	6e-06
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	7e-06
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	8e-06
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	9e-06
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-05
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	1e-05
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	1e-05
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-05
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-05
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-05
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-05
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-05
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-05
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	4e-05
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	8e-05
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-04
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	2e-04
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-04
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-04
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	4e-04
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	5e-04
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	5e-04
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-04
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	7e-04
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	8e-04
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	0.001
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	0.001
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	0.002
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	0.002
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	0.002
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	0.003
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	0.003
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	0.004

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  193 bits (491), Expect = 8e-64
 Identities = 78/85 (91%), Positives = 83/85 (97%)

Query: 85  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 144
           YIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV+G+KIKLQIWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 145 QERFRAVTRSYYRGAAGALMVIDVS 169
           QERFRAVTRSYYRGAAGALMV D++
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDIT 85

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  163 bits (415), Expect = 4e-52
 Identities = 53/84 (63%), Positives = 67/84 (79%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           FK I+IGD GVGKS LL +FT+ KF      TIGV+F T+ IEV G+++KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
           RFR++T SYYRGA GAL+V D+++
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITN 84

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  158 bits (402), Expect = 3e-50
 Identities = 61/87 (70%), Positives = 75/87 (86%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
           Y+Y+FKYIIIGD GVGKSCLL QFT+++F P    TIGVEFG R+I + G++IKLQIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
           AGQE FR++TRSYYRGAAGAL+V D++
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDIT 87

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  154 bits (390), Expect = 2e-48
 Identities = 59/83 (71%), Positives = 70/83 (84%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           FK++IIG  G GKSCLLHQF E KF  D  HTIGVEFG+R++ V G+ +KLQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           RFR+VTRSYYRGAAGAL+V D++
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDIT 83

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  149 bits (380), Expect = 6e-47
 Identities = 50/83 (60%), Positives = 66/83 (79%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           FK ++IGD GVGK+ LL +F + KF  +   TIGV+F ++ IEV G+K+KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           RFR++T SYYRGA GA++V DV+
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVT 83

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  143 bits (363), Expect = 8e-44
 Identities = 61/88 (69%), Positives = 74/88 (84%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           SY+Y+FKYIIIGD GVGKSCLL QFT+++F P    TIGVEFG R+I +  + IKLQIWD
Sbjct: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQE FR++TRSYYRGAAGAL+V D++
Sbjct: 62  TAGQESFRSITRSYYRGAAGALLVYDIT 89

Length = 210

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  141 bits (359), Expect = 1e-43
 Identities = 52/85 (61%), Positives = 66/85 (77%)

Query: 85  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 144
           Y+FK ++IGD GVGKS LL +FT  +F  D   TIGVEF TR I++ G+ IK QIWDTAG
Sbjct: 2   YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAG 61

Query: 145 QERFRAVTRSYYRGAAGALMVIDVS 169
           QER+RA+T +YYRGA GAL+V D++
Sbjct: 62  QERYRAITSAYYRGAVGALLVYDIT 86

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  140 bits (356), Expect = 3e-43
 Identities = 48/82 (58%), Positives = 62/82 (75%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD GVGKS LL +FT+ KF  +   TIGV+F T+ IEV G+ +KLQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
           FRA+   YYRGA G L+V D++
Sbjct: 61  FRALRPLYYRGAQGFLLVYDIT 82

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  128 bits (324), Expect = 2e-38
 Identities = 52/85 (61%), Positives = 66/85 (77%)

Query: 85  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 144
           Y+FK ++IGD GVGKSCLL +F+E  F P    TIG++F  R IE+ G+KIKLQIWDTAG
Sbjct: 2   YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAG 61

Query: 145 QERFRAVTRSYYRGAAGALMVIDVS 169
           QERFR +T SYYRGA G ++V D++
Sbjct: 62  QERFRTITTSYYRGAMGIILVYDIT 86

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  123 bits (310), Expect = 8e-36
 Identities = 51/95 (53%), Positives = 70/95 (73%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
           M+    + Y Y+FK ++IGD GVGKS +L +FT  +F  +   TIGVEF TR ++V G+ 
Sbjct: 1   MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60

Query: 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           +K QIWDTAGQER+RA+T +YYRGA GAL+V D++
Sbjct: 61  VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 95

Length = 216

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  120 bits (304), Expect = 2e-35
 Identities = 49/85 (57%), Positives = 63/85 (74%)

Query: 85  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 144
           Y+FK ++IGD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ +KLQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 145 QERFRAVTRSYYRGAAGALMVIDVS 169
           QERFR +T SYYRGA G ++V DV+
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVT 85

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  120 bits (304), Expect = 2e-35
 Identities = 47/83 (56%), Positives = 60/83 (72%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K ++IGD GVGKS LL +FT+  F  D   TIGV+F  + + V G+K+KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           RFR +T SYYRGA G ++V DV+
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVT 83

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  121 bits (305), Expect = 5e-35
 Identities = 50/96 (52%), Positives = 68/96 (70%), Gaps = 7/96 (7%)

Query: 85  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTA 143
           Y F+ I+IGD  VGKS LL +FTE +F      T+GV+F +R+IE+  G +IKLQ+WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 144 GQERFRAVTRSYYRGAAGALMVIDVS------HVKE 173
           GQERFR++TRSYYR + G L+V D++      HV +
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHD 96

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  115 bits (290), Expect = 2e-33
 Identities = 46/87 (52%), Positives = 66/87 (75%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
           Y ++FK ++IG+ GVGK+CL+ +FT+  F P    TIGV+F  + +E+ GEKIKLQIWDT
Sbjct: 4   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDT 63

Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
           AGQERFR++T+SYYR A   ++  D++
Sbjct: 64  AGQERFRSITQSYYRSANALILTYDIT 90

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  115 bits (290), Expect = 3e-33
 Identities = 42/85 (49%), Positives = 63/85 (74%)

Query: 85  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 144
           ++FK I+IGD  VGK+C++ +F    F     +TIGV+F  + +E+ G+++KLQIWDTAG
Sbjct: 2   FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAG 61

Query: 145 QERFRAVTRSYYRGAAGALMVIDVS 169
           QERFR +T+SYYR A GA++  D++
Sbjct: 62  QERFRTITQSYYRSANGAIIAYDIT 86

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  115 bits (290), Expect = 6e-33
 Identities = 48/87 (55%), Positives = 64/87 (73%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
           Y ++FK +IIGD GVGKS LL +F +  F      TIGV+F  R +E++GE++KLQIWDT
Sbjct: 3   YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDT 62

Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
           AGQERFR +T +YYRG  G ++V DV+
Sbjct: 63  AGQERFRTITSTYYRGTHGVIVVYDVT 89

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  108 bits (273), Expect = 3e-30
 Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 1/84 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQ 145
           FK ++IGD+GVGK+ ++ ++    F      TIGV+F  ++IE      ++LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 146 ERFRAVTRSYYRGAAGALMVIDVS 169
           ERF  +TR YY+GA GA++V DV+
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVT 84

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  106 bits (266), Expect = 1e-29
 Identities = 35/83 (42%), Positives = 56/83 (67%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           FK +++GD  VGKS ++ +F + +F  +   TIG  F T+ + +    +K +IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           R+R++   YYRGAA A++V D++
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDIT 84

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  105 bits (263), Expect = 3e-29
 Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 1/85 (1%)

Query: 86  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
           IFK I+IGD  VGK+CL ++F   +F      TIGV+F  R +E+ GE+IK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ 61

Query: 146 ERFR-AVTRSYYRGAAGALMVIDVS 169
           ERFR ++ + YYR     + V DV+
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDVT 86

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  103 bits (259), Expect = 1e-28
 Identities = 39/86 (45%), Positives = 58/86 (67%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K II+GD GVGK+ L++Q+  +KF      TIG +F T+ + V    + LQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVSHVK 172
           RF+++  ++YRGA   ++V DV++ K
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPK 86

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  101 bits (252), Expect = 1e-27
 Identities = 43/83 (51%), Positives = 61/83 (73%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           F+ ++IGD GVGK+CLL +FT+ +F      TIGV+F  + IEV G K+++QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           R++ +T+ YYR A G  +V D+S
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDIS 83

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  101 bits (254), Expect = 2e-27
 Identities = 38/88 (43%), Positives = 54/88 (61%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
            +   FK +++GD GVGK+ LL++    +F    P TIG     + IE +   IKLQ+WD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQE +R++   YYRGA G L+V D +
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDST 88

Length = 219

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  100 bits (250), Expect = 6e-27
 Identities = 41/80 (51%), Positives = 59/80 (73%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
           IIIG  GVGK+ L+ +FT+  F   C  T+GV+F  + +E+ G+KI+LQIWDTAGQERF 
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 150 AVTRSYYRGAAGALMVIDVS 169
           ++T +YYR A G ++V D++
Sbjct: 64  SITSAYYRSAKGIILVYDIT 83

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 99.7 bits (248), Expect = 1e-26
 Identities = 51/95 (53%), Positives = 64/95 (67%), Gaps = 2/95 (2%)

Query: 76  SSSGQYS-YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
           SSSGQ S Y   FK ++IGD GVGKS LL  F     + D   TIGV+F  + + V G++
Sbjct: 3   SSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKR 61

Query: 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           +KL IWDTAGQERFR +T SYYR A G ++V DV+
Sbjct: 62  LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVT 96

Length = 211

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 97.6 bits (243), Expect = 3e-26
 Identities = 41/85 (48%), Positives = 56/85 (65%)

Query: 84  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
           S + K I++GD GVGKS L++++   KF     HTIGVEF  + +EV G  + LQIWDTA
Sbjct: 3   SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62

Query: 144 GQERFRAVTRSYYRGAAGALMVIDV 168
           GQERFR++   +YRG+   L+   V
Sbjct: 63  GQERFRSLRTPFYRGSDCCLLTFSV 87

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 97.2 bits (242), Expect = 7e-26
 Identities = 42/84 (50%), Positives = 61/84 (72%), Gaps = 1/84 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
           FK +++GD GVGK+CLL +F +  F+      T+G++F  +++ V G K+KLQIWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 146 ERFRAVTRSYYRGAAGALMVIDVS 169
           ERFR+VT +YYR A   L++ DV+
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVT 84

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 91.8 bits (228), Expect = 8e-24
 Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 10/97 (10%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEF----------GTRIIEVHG 132
           Y Y+ K + +GD GVGK+  L+++T+ KF P    T+G++F          G        
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
            ++ LQ+WDTAGQERFR++T +++R A G L++ D++
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLT 97

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 90.0 bits (223), Expect = 3e-23
 Identities = 35/85 (41%), Positives = 59/85 (69%)

Query: 86  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
           +FK +IIG+  VGK+  L ++ +  F      T+G++F  + +  + ++IKLQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 146 ERFRAVTRSYYRGAAGALMVIDVSH 170
           ER+R +T +YYRGA G +++ D+++
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITN 85

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 87.7 bits (218), Expect = 2e-22
 Identities = 31/83 (37%), Positives = 54/83 (65%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K + +GD  VGK+ ++ +F    F      TIG++F ++ + V  + ++LQ+WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           RFR++  SY R ++ A++V D++
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDIT 83

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 87.0 bits (216), Expect = 3e-22
 Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 86  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAG 144
             K +I+GD  VGKS LL++    K             + T +IE  G+  K  + DTAG
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG 60

Query: 145 QERFRAVTRSYYRGAAGALMVID-VSHVK 172
           QE + A+ R YYR    +L V D V  V 
Sbjct: 61  QEDYDAIRRLYYRAVESSLRVFDIVILVL 89

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 86.3 bits (214), Expect = 6e-22
 Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH--GEKIKLQIWDTAGQ 145
           K I++G+  VGKS ++ +F +  F  D   TIGV+F  + I +    E ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 146 ERFRAVTRSYYRGAAGALMV 165
           E F A+T++YYRGA   ++V
Sbjct: 62  EEFDAITKAYYRGAQACILV 81

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 85.4 bits (212), Expect = 2e-21
 Identities = 33/82 (40%), Positives = 51/82 (62%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           FK +++G+  VGK+ L+ ++ E KF      T    F  + + + G++I L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
           R+ A+   YYR A GA++V D+
Sbjct: 61  RYHALGPIYYRDADGAILVYDI 82

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 84.5 bits (209), Expect = 3e-21
 Identities = 38/84 (45%), Positives = 56/84 (66%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K I++GD+ VGK+CL+++F +  F  +   TIGV+F     EV G    LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 148 FRAVTRSYYRGAAGALMVIDVSHV 171
           F+ +  +YYRGA   ++V D++ V
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDV 85

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 75.5 bits (186), Expect = 9e-18
 Identities = 25/82 (30%), Positives = 50/82 (60%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K I +G+ GVGKSC++ ++ E +F+     TIG+++G + + V  +++++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
           +  V   +Y+   G L+V DV+
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVT 83

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 75.0 bits (184), Expect = 2e-17
 Identities = 32/89 (35%), Positives = 56/89 (62%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           +Y Y+ K++++GD  VGK  +L    +        + +G+++ T  I + G ++KLQ+WD
Sbjct: 2   AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWD 61

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           T+GQ RF  + RSY RGA G ++V D+++
Sbjct: 62  TSGQGRFCTIFRSYSRGAQGIILVYDITN 90

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 73.7 bits (181), Expect = 8e-17
 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           K +++G   VGK+ L+ ++   +F+     +TIG  F  + + V    + L IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           R+ A++R YYRGA  A++  D++
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLT 84

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 67.9 bits (167), Expect = 6e-15
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++G  GVGKS L  +F   +F+ +   TI  +   + I V GE   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 148 FRAVTRSYYRGAAGALMVIDV 168
           F A+   Y R   G ++V  +
Sbjct: 60  FSAMRDQYIRNGDGFILVYSI 80

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 66.8 bits (163), Expect = 2e-14
 Identities = 25/27 (92%), Positives = 27/27 (100%)

Query: 14 YIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          YIFKYIIIGDMGVGKSCLLHQFTE+K+
Sbjct: 1  YIFKYIIIGDMGVGKSCLLHQFTEKKF 27

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 66.8 bits (163), Expect = 2e-14
 Identities = 30/82 (36%), Positives = 44/82 (53%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K I++GD  VGKS L+ +F    + P    T  +       +  G+ I +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
           F+ +  SYY  A   ++V DV+
Sbjct: 62  FQTMHASYYHKAHACILVFDVT 83

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 68.0 bits (166), Expect = 2e-14
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 5/85 (5%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GDM VGK+ LLH++ E++F  D   T+G  F  +          + IWDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAFYLK----QWGPYNISIWDTAGREQ 56

Query: 148 FRAVTRSYYRGAAGALMVIDVSHVK 172
           F  +   Y RGAA  ++  DVS+V+
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQ 81

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 91  IIGDMGVGKSCLLHQFTEQKFM---PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           ++G  GVGKS LL+     +          T   +      E+   K+KL + DT G + 
Sbjct: 2   VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYV--KELDKGKVKLVLVDTPGLDE 59

Query: 148 F-----RAVTRSYYRGAAGALMVIDVS 169
           F       + R   RGA   L+V+D +
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDST 86

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  QF +  F+ D   TI   + T+  E+ G+  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWARLDILDTAGQE 61

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
            F A+   Y R   G L+V  V+
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVT 84

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 62.7 bits (153), Expect = 8e-13
 Identities = 27/83 (32%), Positives = 44/83 (53%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           FK +++GD G GK+  + +    +F      T+GVE        +  KI+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           +F  +   YY     A+++ DV+
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVT 83

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 63.6 bits (155), Expect = 8e-13
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 87  FKYIIIGDMGVGKSCLL--H---QFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           FK I++GD GVGK+  +  H   +F E+K++P    T+GVE        +   I   +WD
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEF-EKKYIP----TLGVEVHPLKFYTNCGPICFNVWD 64

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQE+F  +   YY     A+++ DV+
Sbjct: 65  TAGQEKFGGLRDGYYIKGQCAIIMFDVT 92

Length = 215

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  QF +  F+ D   TI  +   + IE+ GE   L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
            F A+   Y R   G L+V  +
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSI 81

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  QF +  F+ +   TI  +   + IE+ GE   L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 147 RFRAVTRSYYRGAAGALMV 165
            F A+   Y R   G L+V
Sbjct: 62  EFSAMRDQYMRTGEGFLLV 80

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 21/29 (72%), Positives = 27/29 (93%)

Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          Y+Y+FKYIIIGD GVGKSCLL QFT++++
Sbjct: 1  YAYLFKYIIIGDTGVGKSCLLLQFTDKRF 29

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K I++G  GVGKS L  QF   +F+ D   T    +  +++ + GE+++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQLNILDTAGQE 59

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
            + A+  +Y+R   G L+V  +
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSI 81

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 23/53 (43%), Positives = 40/53 (75%)

Query: 118 TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           TIG++F ++ + +    ++LQ+WDTAGQERFR++  SY R +A A++V D+++
Sbjct: 12  TIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Length = 176

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD  VGK+CLL  +T  KF  +   T+  +  +  + V G+++ L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 148 F 148
           +
Sbjct: 61  Y 61

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 22/30 (73%), Positives = 28/30 (93%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          SY+Y+FKYIIIGD GVGKSCLL QFT++++
Sbjct: 2  SYAYLFKYIIIGDTGVGKSCLLLQFTDKRF 31

Length = 210

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 27/82 (32%), Positives = 40/82 (48%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K ++IGD G GKS LL Q    +F P+     G       +EV G+   L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
            +     + + A   L+V D++
Sbjct: 61  LKFEHIIFMKWADAILLVYDLT 82

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 9/100 (9%)

Query: 75  MSSSGQYSYSY-IFKYIIIGDMGVGKSCLLHQFT----EQKFMPDCPHTIGVEFGTRIIE 129
           M+   Q +  Y  FK +I+GD G GK+  + +      E+K+ P    TIGVE       
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----TIGVEVHPLDFF 56

Query: 130 VHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
            +  KI+   WDTAGQE+F  +   YY     A+++ DV+
Sbjct: 57  TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96

Length = 219

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 55.6 bits (134), Expect = 6e-10
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQ 145
            K +++GD   GK+ L+ +F ++ F      TIG++F +R I + G   + LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 146 ERFRAVTRSYYRGAAGALMVIDVSHVK 172
           +    +   Y  GA    +V D+++ +
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQ 87

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 61

Query: 148 FRAVTRSYYRGA 159
           +  +    YRGA
Sbjct: 62  YNRLRPLSYRGA 73

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVSHVK 172
            + A+   Y R   G L V  ++  K
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRK 86

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +++GD  VGK+CLL  +T   F  D   T+   +    +EV G+ ++L +WDTAGQE
Sbjct: 2   VVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSA-DVEVDGKPVELGLWDTAGQE 57

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 53.3 bits (129), Expect = 2e-09
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
           +++G  G GK+ +L++    + +   P TIG      +  V  + +K  +WD  GQ++ R
Sbjct: 3   LMLGLDGAGKTTILYKLKLGEVVTTIP-TIG----FNVETVEYKNVKFTVWDVGGQDKIR 57

Query: 150 AVTRSYYRGAAGALMVIDVSH 170
            + + YY    G + V+D S 
Sbjct: 58  PLWKHYYENTDGLIFVVDSSD 78

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K  ++G   VGKS L  QF E  F+     TI   F ++II   G++  L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 148 FRAVTRSYYRGAAGALMVIDVSHVK 172
           +  + + Y  G  G ++V  V+  K
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRK 86

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 52.5 bits (126), Expect = 5e-09
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  QF +  F+     TI   +  ++ E+ G +  L+I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQV-EIDGRQCDLEILDTAGTE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           +F A+   Y +   G L+V  V+
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVT 83

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 52.7 bits (126), Expect = 6e-09
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 92  IGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 151
           +GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQE+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 152 TRSYYRGAAGALMVIDVS 169
              YY     A+++ DV+
Sbjct: 61  RDGYYIQGQCAIIMFDVT 78

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGT-RIIEVHGEKIKLQIWDTAGQE 146
           K +++G  GVGK+ L  Q   +KF  D   T G+     +I     +KI+L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 147 RFRA 150
            + A
Sbjct: 63  IYHA 66

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 51.8 bits (124), Expect = 8e-09
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 86  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
            +K +++G  GVGKS +  QF    F      TI   + T+   +  E   L I DTAGQ
Sbjct: 2   EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQAR-IDNEPALLDILDTAGQ 60

Query: 146 ERFRAVTRSYYRGAAGALMVIDVS 169
             F A+   Y R   G ++   V+
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVT 84

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 16/25 (64%), Positives = 20/25 (80%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          FK I+IGD GVGKS LL +FT+ K+
Sbjct: 1  FKIILIGDSGVGKSSLLSRFTDGKF 25

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQ 145
            K +++GD G GK+CLL  + +  F  +   T+  E     ++V +G+ I+L +WDTAGQ
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDTAGQ 62

Query: 146 ERF 148
           E +
Sbjct: 63  EDY 65

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  QF    F+     TI  +F  + IEV      L+I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 147 RFRAVTRSYYRGAAGALMV 165
           +F ++   Y +   G ++V
Sbjct: 61  QFASMRDLYIKNGQGFIVV 79

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYF 41
          FK++IIG  G GKSCLLHQF E K+ 
Sbjct: 1  FKFLIIGSAGTGKSCLLHQFIENKFK 26

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  QF +  F+     TI  +   + IEV  ++  L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           +F A+   Y +   G  +V  ++
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSIT 83

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 49.2 bits (117), Expect = 8e-08
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD  VGK+CLL  +T   F  +   T+   +  +   V G  + L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQEE 63

Query: 148 F-RAVTRSY 155
           + R  T SY
Sbjct: 64  YDRLRTLSY 72

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 49.1 bits (117), Expect = 8e-08
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD   GK+ LL+ FT   F      T+  E     I V G  ++L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 148 F 148
           F
Sbjct: 61  F 61

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          FK ++IGD GVGK+ LL +F + K+
Sbjct: 1  FKIVLIGDSGVGKTSLLLRFVDNKF 25

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  QF +  F+ +   TI   +  +   +  E   L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQE 64

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
            + A+   Y R   G L V  ++
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSIT 87

Length = 189

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +I+GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 61

Query: 148 F-RAVTRSY 155
           + R    SY
Sbjct: 62  YDRLRPLSY 70

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K  ++GD  +GK+ L+ ++ E +F  +   T+GV F  + I + G +I   IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 148 FR 149
           F 
Sbjct: 62  FI 63

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE- 146
           K +++GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 61

Query: 147 --RFR 149
             R R
Sbjct: 62  YDRLR 66

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
           +++G    GKS LL++    + +   P T+G  F   ++++    + L +WD  GQE+ R
Sbjct: 3   LLLGLDSAGKSTLLYKLKHAELVTTIP-TVG--FNVEMLQLEK-HLSLTVWDVGGQEKMR 58

Query: 150 AVTRSYYRGAAGALMVIDVS 169
            V + Y     G + V+D S
Sbjct: 59  TVWKCYLENTDGLVYVVDSS 78

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           + + +G  G GK+ +L +  + +FM   P TIG    T    V  + +K  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIP-TIGFNVET----VEYKNLKFTIWDVGGKHK 55

Query: 148 FRAVTRSYYRGAAGALMVIDVSH 170
            R + + YY      + VID SH
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSH 78

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 47.5 bits (113), Expect = 4e-07
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +I+GD   GK+ LL+ FT  +F  +   T+   + T    V G+ ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDC-RVDGKPVQLALWDTAGQEE 61

Query: 148 F 148
           +
Sbjct: 62  Y 62

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIG--VEFGTRIIEVHGEKIKLQIWDTAG 144
           +K II+G    GK+ +L+QF   + +   P TIG  VE      E+  + I+  +WD  G
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHTSP-TIGSNVE------EIVYKNIRFLMWDIGG 68

Query: 145 QERFRAVTRSYYRGAAGALMVID 167
           QE  R+   +YY      ++VID
Sbjct: 69  QESLRSSWNTYYTNTDAVILVID 91

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 46.7 bits (112), Expect = 5e-07
 Identities = 13/24 (54%), Positives = 19/24 (79%)

Query: 17 KYIIIGDMGVGKSCLLHQFTEQKY 40
          K +++GD GVGKS LL +FT+ K+
Sbjct: 1  KLVLVGDGGVGKSSLLIRFTQNKF 24

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 91  IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA 150
           ++G    GK+ L++     +F  D   T+G  F  R +      IK  +WD  GQ RFR+
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 151 VTRSYYRGAAGALMVIDVS 169
           +   Y RG    + V+D +
Sbjct: 60  MWERYCRGVNAIVYVVDAA 78

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 46.5 bits (110), Expect = 9e-07
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           + +++G    GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVTTIP-TIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 148 FRAVTRSYYRGAAGALMVID 167
            R + R YY    G + V+D
Sbjct: 70  IRPLWRHYYTNTQGLIFVVD 89

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIG--VEFGTRIIEVHGEKIKLQIWDTAG 144
            + +I+G    GK+ +L++    + +   P TIG  VE       V  + +K  +WD  G
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVTTIP-TIGFNVE------TVTYKNVKFTVWDVGG 67

Query: 145 QERFRAVTRSYYRGAAGALMVIDVSH 170
           QE  R + R+Y+      + V+D + 
Sbjct: 68  QESLRPLWRNYFPNTDAVIFVVDSAD 93

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV---HGEKIKLQIWDTAGQE 146
           +++G    GK+ +L++    +F+   P T G  F T  I+V   + + +    WD  GQE
Sbjct: 7   VMLGLDSAGKTTVLYRLKFNEFVNTVP-TKG--FNTEKIKVSLGNAKGVTFHFWDVGGQE 63

Query: 147 RFRAVTRSYYRGAAGALMVID 167
           + R + +SY R   G + V+D
Sbjct: 64  KLRPLWKSYTRCTDGIVFVVD 84

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 15/92 (16%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFM------------PDCPHTIGVEFGTRIIEVHGEKI 135
           K ++IG +G GK+  +   +++  +               P T+ ++FG+  +    E  
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDT 68

Query: 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167
            + ++ T GQERF+ +     RGA GA++++D
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVD 100

Length = 187

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  QF +  F+     TI   +  + +EV G++  L+I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           +F A+   Y +   G ++V  ++
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSIT 83

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD  VGK+ L+  +T   +  +   T    F   +  V G+ ++LQ+ DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVV-LVDGKPVRLQLCDTAGQDE 60

Query: 148 F 148
           F
Sbjct: 61  F 61

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD   GK+ LL  F +  F  +   T+  E  T   EV  ++I+L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
           +  V    Y  +   L+  D+S
Sbjct: 62  YDNVRPLSYPDSDAVLICFDIS 83

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD   GK+ LLH F +  F  +   T+  E  T   E+  ++I+L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
           +  V    Y  +   L+  D+S
Sbjct: 66  YDNVRPLSYPDSDAVLICFDIS 87

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           K II+GD GVGK+ L++Q+  +K+
Sbjct: 1  LKVIILGDSGVGKTSLMNQYVNKKF 25

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD GVGK+ L  Q     F+     TI   +  +++ V G+   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
           + A+   + R   G ++V  ++
Sbjct: 60  YTALRDQWIREGEGFILVYSIT 81

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 43.7 bits (103), Expect = 7e-06
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQED 61

Query: 148 F 148
           +
Sbjct: 62  Y 62

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
           ++ +++GD GVGKS L + FT   +  D  +   G +   R + V GE+  L ++D   Q
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYE-DSAYEASGDDTYERTVSVDGEEATLVVYDHWEQ 59

Query: 146 ERFRAVTRSYYRGAAGALMVIDV 168
           E    +  S  +     ++V  V
Sbjct: 60  EDGMWLEDSCMQVGDAYVIVYSV 82

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 14 YIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          Y F+ I+IGD  VGKS LL +FTE ++
Sbjct: 1  YQFRLIVIGDSTVGKSSLLKRFTEGRF 27

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF 41
          Y+FK ++IGD GVGKSCLL +F +  Y 
Sbjct: 1  YLFKLLLIGDSGVGKSCLLLRFADDTYT 28

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE------KIKLQIWD 141
           K +++GD GVGKS L+H   + + + +   T+G     R    +GE         +++WD
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHT-YGEGTPEEKTFYVELWD 60

Query: 142 TAGQ----ERFRAVTRSYYRGAAGALMVIDVSHVK 172
             G     E  ++    +Y    G + V D+++ K
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKK 95

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 15/97 (15%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG------EKIK------- 136
           +++GD GVGKS L+H   +   +   P TIG   G + I  +G        IK       
Sbjct: 25  LVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHIT-YGSPGSSSNSIKGDSERDF 83

Query: 137 -LQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172
            +++WD +G ER++     +Y    G + V D+S  +
Sbjct: 84  FVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR 120

Length = 334

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 16/27 (59%), Positives = 22/27 (81%)

Query: 14 YIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          Y+FK ++IGD GVGKSCLL +F+E  +
Sbjct: 2  YLFKLLLIGDSGVGKSCLLLRFSEDSF 28

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 4  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFL 42
          M+    + Y Y+FK ++IGD GVGKS +L +FT  ++ L
Sbjct: 1  MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCL 39

Length = 216

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 98  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 157
           GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R YY 
Sbjct: 21  GKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYT 75

Query: 158 GAAGALMVIDVS 169
           G  G + V+D +
Sbjct: 76  GTQGLIFVVDSA 87

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K  ++G  GVGKS L  +F  ++F+ +    +   + +R + + GE++ L+I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 148 FRAV--TRSYYRGAAGALMVIDVS 169
                      R A G ++V  ++
Sbjct: 60  NEDPESLERSLRWADGFVLVYSIT 83

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 16/29 (55%), Positives = 22/29 (75%)

Query: 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFL 42
          Y+FK ++IGD GVGKS LL +FT  ++ L
Sbjct: 2  YLFKIVLIGDSGVGKSNLLSRFTRNEFNL 30

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 12/29 (41%), Positives = 21/29 (72%)

Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          Y Y+ K + +GD GVGK+  L+++T+ K+
Sbjct: 1  YDYLIKLLALGDSGVGKTTFLYRYTDNKF 29

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCP--------HTIGVEFGTRIIEVHGEKIKLQIWD 141
           +I+G    GK+  L Q T+ KF  +           T+G+  GT  IEV   K +L  WD
Sbjct: 3   LILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGT--IEV--GKARLMFWD 57

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
             GQE  R++   YY  + G + VID +
Sbjct: 58  LGGQEELRSLWDKYYAESHGVIYVIDST 85

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD   GK+ LLH F +  +      T+  E  T   E+   +I+L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
           +  V    Y  +   L+  D+S
Sbjct: 62  YDNVRPLAYPDSDAVLICFDIS 83

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 13/26 (50%), Positives = 22/26 (84%)

Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTE 37
          Y ++FK ++IG+ GVGK+CL+ +FT+
Sbjct: 4  YDFLFKIVLIGNAGVGKTCLVRRFTQ 29

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 13/21 (61%), Positives = 17/21 (80%)

Query: 15 IFKYIIIGDMGVGKSCLLHQF 35
          IFK I+IGD  VGK+CL ++F
Sbjct: 2  IFKIIVIGDSNVGKTCLTYRF 22

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
           +++G    GK+ +L++    + +   P TIG    T    V  + +K  +WD  GQ++ R
Sbjct: 21  LMVGLDAAGKTTILYKLKLGEVVTTIP-TIGFNVET----VEYKNLKFTMWDVGGQDKLR 75

Query: 150 AVTRSYYRGAAGALMVID 167
            + R YY+   G + V+D
Sbjct: 76  PLWRHYYQNTNGLIFVVD 93

Length = 182

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           + + +G  GVGK+ L+ +F    F P    T+  E  ++  EV G K+ + I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 148 FRAVTR-SYYRGAAGALMVIDVS 169
           F A+ + S   G A AL V  V 
Sbjct: 60  FPAMRKLSIQNGDAFAL-VYSVD 81

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEV--HGEKIKLQIWDTA 143
           +  ++GD  VGKS L+  F      F  +   T G +   + + V    + ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 144 GQERFRAVTRSYYRGAAGALMVIDVS 169
           GQE F  +  + +   A   +V DV+
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVT 87

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K +++GD  VGK+CLL  +    F  +   T+   +    + V G++  L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVS-VTVGGKQYLLGLYDTAGQE 59

Query: 147 RF 148
            +
Sbjct: 60  DY 61

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 11/22 (50%), Positives = 18/22 (81%)

Query: 14 YIFKYIIIGDMGVGKSCLLHQF 35
          ++FK I+IGD  VGK+C++ +F
Sbjct: 2  FLFKIILIGDSNVGKTCVVQRF 23

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           + +++G    GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDK 73

Query: 148 FRAVTRSYYRGAAGALMVID 167
            R + R Y++   G + V+D
Sbjct: 74  IRPLWRHYFQNTQGLIFVVD 93

Length = 181

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          Y ++FK +IIGD GVGKS LL +F +  +
Sbjct: 3  YDHLFKLLIIGDSGVGKSSLLLRFADNTF 31

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
           +I+G  G GK+ +L++    + +   P TIG    T    V  + +K Q+WD  GQ   R
Sbjct: 3   LILGLDGAGKTTILYRLQVGEVVTTIP-TIGFNVET----VTYKNLKFQVWDLGGQTSIR 57

Query: 150 AVTRSYYRGAAGALMVIDVS 169
              R YY      + V+D +
Sbjct: 58  PYWRCYYSNTDAIIYVVDST 77

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQ 38
          FK ++IGD+GVGK+ ++ ++   
Sbjct: 1  FKVLVIGDLGVGKTSIIKRYVHG 23

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 67  LLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR 126
           LL  L     SS Q       + +++G    GK+ +L Q   +      P       G  
Sbjct: 1   LLSILRKLKPSSRQEV-----RILLLGLDNAGKTTILKQLASEDISHITPTQ-----GFN 50

Query: 127 IIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           I  V  +  KL +WD  GQ + R   R+Y+      + VID +
Sbjct: 51  IKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSA 93

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
           +++G    GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ++ R
Sbjct: 4   LMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQDKIR 58

Query: 150 AVTRSYYRGAAGALMVID 167
            + R Y++   G + V+D
Sbjct: 59  PLWRHYFQNTQGLIFVVD 76

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           K ++IGD GVGKS LL +FT+  +
Sbjct: 1  LKILLIGDSGVGKSSLLLRFTDDTF 25

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
           +   FK +++GD GVGK+ LL++    ++  G   T
Sbjct: 1  LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPT 37

Length = 219

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           ++ ++ G  GVGKS L+ +F +  F      TI   +  ++I        LQI DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKSICTLQITDTTGSH 60

Query: 147 RFRAVTR-SYYRGAA 160
           +F A+ R S  +G A
Sbjct: 61  QFPAMQRLSISKGHA 75

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 20/32 (62%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 5  SSSGQYS-YSYIFKYIIIGDMGVGKSCLLHQF 35
          SSSGQ S Y   FK ++IGD GVGKS LL  F
Sbjct: 3  SSSGQSSGYDLSFKILLIGDSGVGKSSLLVSF 34

Length = 211

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHT---IGVEFGTRIIEVHGEKIKLQIWDTA 143
           K +++GD+  GK+ +L     Q    DC P T      E  T  +E   ++++L +WDT+
Sbjct: 15  KLVLVGDVQCGKTAML-----QVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTS 69

Query: 144 GQERFRAVTRSYYRGAAGALMVIDVS 169
           G   +  V    Y  +   L+  D+S
Sbjct: 70  GSPYYDNVRPLCYSDSDAVLLCFDIS 95

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLG 43
          FK +++GD GVGK+CLL +F +  +  G
Sbjct: 1  FKVMLVGDSGVGKTCLLVRFKDGAFLAG 28

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG0084|consensus	205		99.97
KOG0094|consensus	221		99.95
KOG0080|consensus	209		99.95
KOG0092|consensus	200		99.95
KOG0078|consensus	207		99.94
KOG0098|consensus	216		99.93
KOG0086|consensus	214		99.93
KOG0095|consensus	213		99.93
KOG0079|consensus	198		99.93
KOG0087|consensus	222		99.93
KOG0394|consensus	210		99.92
KOG0093|consensus	193		99.92
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.91
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.9
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.9
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.9
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.9
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.9
KOG0091|consensus	213		99.9
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.9
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.89
KOG0088|consensus	218		99.89
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.89
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.89
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.89
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.89
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.88
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.88
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.88
KOG0097|consensus	215		99.88
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.87
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.87
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.87
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.87
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.87
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.87
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.87
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.87
PLN03110	216	Rab GTPase; Provisional	99.86
PLN00023	334	GTP-binding protein; Provisional	99.86
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.86
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.86
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.86
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.86
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.86
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.86
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.86
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.86
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.86
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.86
PTZ00369	189	Ras-like protein; Provisional	99.86
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.86
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.85
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.85
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.85
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.85
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.85
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.85
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.85
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.85
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.85
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.85
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.85
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.84
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.84
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.84
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.84
PLN03108	210	Rab family protein; Provisional	99.84
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.84
PLN03118	211	Rab family protein; Provisional	99.83
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.83
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.83
KOG0393|consensus	198		99.83
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.83
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.83
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.83
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.83
KOG0081|consensus	219		99.83
PRK03003	472	GTP-binding protein Der; Reviewed	99.82
KOG0083|consensus	192		99.82
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.82
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.82
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.82
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.82
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.82
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.81
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.81
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.81
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.81
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.81
PLN00223	181	ADP-ribosylation factor; Provisional	99.8
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.8
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.8
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.8
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.8
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.8
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.8
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.8
PTZ00133	182	ADP-ribosylation factor; Provisional	99.79
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.79
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.79
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.78
COG1100	219	GTPase SAR1 and related small G proteins [General	99.78
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.78
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.78
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.78
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.78
KOG0395|consensus	196		99.77
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.77
COG1160	444	Predicted GTPases [General function prediction onl	99.76
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.76
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.76
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.76
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.75
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.75
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.75
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.75
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.75
KOG4252|consensus	246		99.74
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.74
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.73
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.73
PRK00093	435	GTP-binding protein Der; Reviewed	99.72
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.72
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.72
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.71
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.7
KOG0073|consensus	185		99.7
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.69
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.69
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.68
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.68
KOG0070|consensus	181		99.68
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.66
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.66
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.65
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.64
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.64
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.61
KOG1673|consensus	205		99.61
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.6
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.58
KOG0075|consensus	186		99.58
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.58
KOG0096|consensus	216		99.58
KOG0071|consensus	180		99.55
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.51
KOG0074|consensus	185		99.49
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.49
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.49
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.49
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.48
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.48
PRK04213	201	GTP-binding protein; Provisional	99.47
PRK03003	472	GTP-binding protein Der; Reviewed	99.47
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.46
PTZ00099	176	rab6; Provisional	99.45
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.44
cd00881	189	GTP_translation_factor GTP translation factor fami	99.44
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.43
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.43
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.42
PRK15494	339	era GTPase Era; Provisional	99.41
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.41
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.4
KOG3883|consensus	198		99.4
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.4
PRK00093	435	GTP-binding protein Der; Reviewed	99.38
KOG4423|consensus	229		99.38
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.37
KOG0084|consensus	205		99.37
PRK10218	607	GTP-binding protein; Provisional	99.34
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.34
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.33
CHL00189	742	infB translation initiation factor 2; Provisional	99.32
KOG0076|consensus	197		99.32
PRK11058	426	GTPase HflX; Provisional	99.31
PRK05306	787	infB translation initiation factor IF-2; Validated	99.31
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.31
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.31
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.31
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.31
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.31
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.31
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.3
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.3
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.28
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.27
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.25
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.25
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.24
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.23
KOG0080|consensus	209		99.23
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.22
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.22
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.21
PRK05433	600	GTP-binding protein LepA; Provisional	99.2
PRK04004	586	translation initiation factor IF-2; Validated	99.2
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.2
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.19
PRK12299	335	obgE GTPase CgtA; Reviewed	99.19
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.19
KOG0072|consensus	182		99.18
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.18
PRK00089	292	era GTPase Era; Reviewed	99.17
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.17
PRK12317	425	elongation factor 1-alpha; Reviewed	99.16
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.15
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.15
KOG0095|consensus	213		99.14
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.14
KOG0094|consensus	221		99.13
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.12
COG2229	187	Predicted GTPase [General function prediction only	99.11
KOG0092|consensus	200		99.11
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.1
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.1
COG0486	454	ThdF Predicted GTPase [General function prediction	99.1
PRK13351	687	elongation factor G; Reviewed	99.09
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.09
KOG0078|consensus	207		99.09
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.09
PRK09602	396	translation-associated GTPase; Reviewed	99.09
PRK12297	424	obgE GTPase CgtA; Reviewed	99.07
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.06
KOG0087|consensus	222		99.06
PRK12296	500	obgE GTPase CgtA; Reviewed	99.05
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.05
KOG1423|consensus	379		99.0
KOG1707|consensus	625		99.0
COG3596	296	Predicted GTPase [General function prediction only	99.0
COG0218	200	Predicted GTPase [General function prediction only	98.99
COG1159	298	Era GTPase [General function prediction only]	98.99
PRK12735	396	elongation factor Tu; Reviewed	98.98
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.98
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.98
KOG0394|consensus	210		98.97
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.97
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.96
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.96
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.95
COG1160	444	Predicted GTPases [General function prediction onl	98.95
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.94
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.91
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.91
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.91
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.91
PLN03126	478	Elongation factor Tu; Provisional	98.9
PRK12736	394	elongation factor Tu; Reviewed	98.9
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.88
KOG0077|consensus	193		98.88
PRK12298	390	obgE GTPase CgtA; Reviewed	98.88
KOG0098|consensus	216		98.87
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.86
CHL00071	409	tufA elongation factor Tu	98.86
KOG1191|consensus	531		98.85
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.84
KOG0079|consensus	198		98.84
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.83
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.81
KOG0086|consensus	214		98.8
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.8
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	98.79
KOG0088|consensus	218		98.78
PRK00049	396	elongation factor Tu; Reviewed	98.77
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.77
PTZ00258	390	GTP-binding protein; Provisional	98.76
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.76
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.76
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.75
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.74
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.74
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	98.74
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.73
PRK12739	691	elongation factor G; Reviewed	98.72
PRK09601	364	GTP-binding protein YchF; Reviewed	98.72
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	98.71
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	98.71
COG1163	365	DRG Predicted GTPase [General function prediction	98.7
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.69
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	98.68
KOG1707|consensus	625		98.68
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.67
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	98.66
KOG0081|consensus	219		98.64
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.64
PLN03110	216	Rab GTPase; Provisional	98.64
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	98.63
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.62
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.62
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.61
PLN00043	447	elongation factor 1-alpha; Provisional	98.6
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.6
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.6
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	98.6
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.6
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.6
PLN03127	447	Elongation factor Tu; Provisional	98.6
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.6
PTZ00141	446	elongation factor 1- alpha; Provisional	98.59
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.59
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.58
COG1084	346	Predicted GTPase [General function prediction only	98.58
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.58
KOG0091|consensus	213		98.57
PRK00007	693	elongation factor G; Reviewed	98.56
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.56
KOG0097|consensus	215		98.56
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.55
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	98.55
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.55
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	98.55
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.54
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.54
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.52
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	98.52
KOG0093|consensus	193		98.52
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.51
KOG3886|consensus	295		98.51
KOG4252|consensus	246		98.51
PRK12740	668	elongation factor G; Reviewed	98.5
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	98.5
PTZ00369	189	Ras-like protein; Provisional	98.5
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.49
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.49
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.48
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.47
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.47
PLN00023	334	GTP-binding protein; Provisional	98.47
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.47
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.47
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	98.47
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.47
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.46
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	98.46
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.46
PLN03108	210	Rab family protein; Provisional	98.46
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.45
KOG0090|consensus	238		98.45
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.44
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.44
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.44
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.44
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.44
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.44
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.43
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.43
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.42
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.42
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	98.41
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	98.41
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.4
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.39
COG1100	219	GTPase SAR1 and related small G proteins [General	98.39
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.39
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.38
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	98.38
KOG0395|consensus	196		98.36
PTZ00416	836	elongation factor 2; Provisional	98.36
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.35
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.35
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.35
COG1161	322	Predicted GTPases [General function prediction onl	98.34
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.34
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.33
PRK07560	731	elongation factor EF-2; Reviewed	98.32
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.31
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.3
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	98.28
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.27
KOG0393|consensus	198		98.27
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.27
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.27
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	98.26
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	98.26
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.25
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.24
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.23
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.23
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	98.22
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.21
PTZ00133	182	ADP-ribosylation factor; Provisional	98.21
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	98.21
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.2
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.2
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.19
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.18
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.18
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	98.17
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.16
PLN00223	181	ADP-ribosylation factor; Provisional	98.16
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.15
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.15
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.14
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	98.14
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.13
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.13
PLN03118	211	Rab family protein; Provisional	98.12
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.12
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.12
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	98.12
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.12
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.11
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.11
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.08
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.07
PRK13796	365	GTPase YqeH; Provisional	98.07
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.07
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	98.07
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	98.06
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.05
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.05
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.03
PRK12288	347	GTPase RsgA; Reviewed	98.02
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.01
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.01
PRK12289	352	GTPase RsgA; Reviewed	98.0
KOG1547|consensus	336		97.99
KOG0705|consensus	749		97.99
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.99
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	97.98
COG2262	411	HflX GTPases [General function prediction only]	97.97
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.96
KOG2655|consensus	366		97.95
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	97.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.95
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.95
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.94
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	97.92
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	97.91
PRK14845	1049	translation initiation factor IF-2; Provisional	97.9
KOG0468|consensus	971		97.9
PRK04213	201	GTP-binding protein; Provisional	97.89
smart00178	184	SAR Sar1p-like members of the Ras-family of small	97.88
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	97.88
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.88
KOG1486|consensus	364		97.87
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	97.85
KOG3905|consensus	473		97.83
KOG1673|consensus	205		97.83
KOG0462|consensus	650		97.82
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.8
KOG1489|consensus	366		97.78
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	97.77
KOG1491|consensus	391		97.77
KOG1424|consensus	562		97.77
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.76
COG1162	301	Predicted GTPases [General function prediction onl	97.75
KOG1145|consensus	683		97.75
KOG3887|consensus	347		97.74
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.73
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.72
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.7
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	97.69
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.67
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.67
PRK00098	298	GTPase RsgA; Reviewed	97.66
KOG0082|consensus	354		97.64
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	97.62
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	97.61
PRK15494	339	era GTPase Era; Provisional	97.61
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.59
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	97.59
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.58
KOG0458|consensus	603		97.57
cd04105	203	SR_beta Signal recognition particle receptor, beta	97.55
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	97.53
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.53
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	97.52
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.51
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	97.5
PRK13768	253	GTPase; Provisional	97.42
COG0536	369	Obg Predicted GTPase [General function prediction	97.41
KOG0083|consensus	192		97.41
KOG4423|consensus	229		97.41
KOG3859|consensus	406		97.37
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	97.36
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.35
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.35
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	97.31
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.3
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	97.24
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	97.23
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	97.22
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.21
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	97.21
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	97.2
KOG1144|consensus	1064		97.2
KOG0096|consensus	216		97.17
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.16
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	97.16
KOG0410|consensus	410		97.16
PRK08118	167	topology modulation protein; Reviewed	97.15
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.13
KOG1954|consensus	532		97.09
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.09
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.07
PRK09866	741	hypothetical protein; Provisional	97.07
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	97.06
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.04

>KOG0084|consensus

Probab=99.97  E-value=1.1e-30  Score=182.90  Aligned_cols=94  Identities=53%  Similarity=0.981  Sum_probs=90.8

Q ss_pred             CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q psy13826         80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA  159 (173)
Q Consensus        80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~  159 (173)
                      .+.+++.|||+++|++|||||+|+.||+++.|.+.|..|+|+++..+.+.++++.++|+||||+|||+|+.+...|||+|
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeCCCCCC
Q psy13826        160 AGALMVIDVSHVKE  173 (173)
Q Consensus       160 ~~~ilv~d~t~~~S  173 (173)
                      |++|+|||+|+++|
T Consensus        83 hGii~vyDiT~~~S   96 (205)
T KOG0084|consen   83 HGIIFVYDITKQES   96 (205)
T ss_pred             CeEEEEEEcccHHH
Confidence            99999999999876

>KOG0094|consensus

Probab=99.95  E-value=1.1e-27  Score=167.57  Aligned_cols=89  Identities=36%  Similarity=0.684  Sum_probs=86.5

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+|++++|+.+||||||++||+.+.|...|.+|+|+++....+.+.++.+.|++|||+|||+|+.+.+.|+|++.++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||++|+.|
T Consensus       101 VyDit~~~S  109 (221)
T KOG0094|consen  101 VYDITDRNS  109 (221)
T ss_pred             EEeccccch
Confidence            999999876

>KOG0080|consensus

Probab=99.95  E-value=3.4e-27  Score=160.33  Aligned_cols=93  Identities=49%  Similarity=0.888  Sum_probs=89.1

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ..+...+||+++|++|||||||+.+|..+.|.+..+.|+|+++..+.+.++++++++.||||+|||+|+.+.+.||+.|.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            55677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCC
Q psy13826        161 GALMVIDVSHVKE  173 (173)
Q Consensus       161 ~~ilv~d~t~~~S  173 (173)
                      ++|+|||+|.+++
T Consensus        86 GiIlVYDVT~Rdt   98 (209)
T KOG0080|consen   86 GIILVYDVTSRDT   98 (209)
T ss_pred             eeEEEEEccchhh
Confidence            9999999999874

>KOG0092|consensus

Probab=99.95  E-value=1.8e-27  Score=166.20  Aligned_cols=89  Identities=42%  Similarity=0.770  Sum_probs=86.3

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+|++++|+.+||||||+.||..+.|.+...||+|..+.++.+.+++..++++||||+|||+|+.+.+.|||+|+++|+
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+||.+|
T Consensus        84 vYDit~~~S   92 (200)
T KOG0092|consen   84 VYDITDEES   92 (200)
T ss_pred             EEecccHHH
Confidence            999999876

>KOG0078|consensus

Probab=99.94  E-value=3.3e-26  Score=162.39  Aligned_cols=93  Identities=54%  Similarity=1.009  Sum_probs=90.1

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ..++..+|++++|+++||||+++.+|..+.|...+..|+|+++..+.+.++++.+.+++|||+||++|+.+...||+.|+
T Consensus         7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~   86 (207)
T KOG0078|consen    7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM   86 (207)
T ss_pred             CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCC
Q psy13826        161 GALMVIDVSHVKE  173 (173)
Q Consensus       161 ~~ilv~d~t~~~S  173 (173)
                      ++++|||+||..|
T Consensus        87 gi~LvyDitne~S   99 (207)
T KOG0078|consen   87 GILLVYDITNEKS   99 (207)
T ss_pred             eeEEEEEccchHH
Confidence            9999999999875

>KOG0098|consensus

Probab=99.93  E-value=4.1e-26  Score=158.57  Aligned_cols=91  Identities=66%  Similarity=1.175  Sum_probs=88.1

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      +...+|++++|+.|||||+|+.||+++.|...+..|+|+++..+.+.++++.++|+||||+|||.|+.++..||+.|.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      |||||+++++|
T Consensus        83 lLVydit~r~s   93 (216)
T KOG0098|consen   83 LLVYDITRRES   93 (216)
T ss_pred             EEEEEccchhh
Confidence            99999999876

>KOG0086|consensus

Probab=99.93  E-value=3.4e-26  Score=154.41  Aligned_cols=94  Identities=65%  Similarity=1.155  Sum_probs=90.9

Q ss_pred             CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q psy13826         80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA  159 (173)
Q Consensus        80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~  159 (173)
                      .+.+++.+|++++|+.|.|||+|+++|+.++|.++.+.|+|+++..+.+.+.++.++|+||||+|||+|+...+.||+.|
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeCCCCCC
Q psy13826        160 AGALMVIDVSHVKE  173 (173)
Q Consensus       160 ~~~ilv~d~t~~~S  173 (173)
                      -+.++|||+|+++|
T Consensus        83 AGAlLVYD~Tsrds   96 (214)
T KOG0086|consen   83 AGALLVYDITSRDS   96 (214)
T ss_pred             cceEEEEeccchhh
Confidence            99999999999986

>KOG0095|consensus

Probab=99.93  E-value=1.6e-25  Score=150.66  Aligned_cols=93  Identities=52%  Similarity=0.944  Sum_probs=88.8

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      +.+...|||+++|..|||||+|+++|..+-|+.....|+|+++..+++++++.+++|+||||+||++|+.+...||+.|+
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCC
Q psy13826        161 GALMVIDVSHVKE  173 (173)
Q Consensus       161 ~~ilv~d~t~~~S  173 (173)
                      ++|++||++-..|
T Consensus        82 alilvydiscqps   94 (213)
T KOG0095|consen   82 ALILVYDISCQPS   94 (213)
T ss_pred             eEEEEEecccCcc
Confidence            9999999987654

>KOG0079|consensus

Probab=99.93  E-value=2.3e-26  Score=154.30  Aligned_cols=92  Identities=50%  Similarity=0.942  Sum_probs=88.6

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      .++..+|.+++|++|||||+|+.+|..+.|...|..|+|.++..+++.+++..++|+|||++|+|+|+.+...||+..++
T Consensus         4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg   83 (198)
T KOG0079|consen    4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG   83 (198)
T ss_pred             cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCC
Q psy13826        162 ALMVIDVSHVKE  173 (173)
Q Consensus       162 ~ilv~d~t~~~S  173 (173)
                      +++|||+||.||
T Consensus        84 v~vVYDVTn~ES   95 (198)
T KOG0079|consen   84 VIVVYDVTNGES   95 (198)
T ss_pred             EEEEEECcchhh
Confidence            999999999886

>KOG0087|consensus

Probab=99.93  E-value=7.8e-26  Score=160.12  Aligned_cols=95  Identities=53%  Similarity=0.927  Sum_probs=90.6

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG  158 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~  158 (173)
                      ....+++.||++++|+++||||-|+.||..++|..+..+|+|+++.+..+.++++.++.+||||+|||+|+.+...||+.
T Consensus         7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg   86 (222)
T KOG0087|consen    7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG   86 (222)
T ss_pred             CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCCCC
Q psy13826        159 AAGALMVIDVSHVKE  173 (173)
Q Consensus       159 ~~~~ilv~d~t~~~S  173 (173)
                      |.++++|||+|.+.+
T Consensus        87 AvGAllVYDITr~~T  101 (222)
T KOG0087|consen   87 AVGALLVYDITRRQT  101 (222)
T ss_pred             cceeEEEEechhHHH
Confidence            999999999998753

>KOG0394|consensus

Probab=99.92  E-value=1.2e-25  Score=156.00  Aligned_cols=91  Identities=43%  Similarity=0.767  Sum_probs=87.6

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||+++|.++.|...|..|+|.++.++.+.++++.+.++||||+|||+|..+.-.+||+||+.
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      ++|||+++++|
T Consensus        86 vlvydv~~~~S   96 (210)
T KOG0394|consen   86 VLVYDVNNPKS   96 (210)
T ss_pred             EEEeecCChhh
Confidence            99999999876

>KOG0093|consensus

Probab=99.92  E-value=1e-24  Score=146.26  Aligned_cols=95  Identities=38%  Similarity=0.805  Sum_probs=90.0

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG  158 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~  158 (173)
                      ..+.++..+|++++|++.||||||+.+++++.|...+..|.|+++..+++.-..++++++||||+|+|+|+.+...|||+
T Consensus        14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRg   93 (193)
T KOG0093|consen   14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRG   93 (193)
T ss_pred             ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhc
Confidence            34567888999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCCCC
Q psy13826        159 AAGALMVIDVSHVKE  173 (173)
Q Consensus       159 ~~~~ilv~d~t~~~S  173 (173)
                      |+++|||||+||.+|
T Consensus        94 amgfiLmyDitNeeS  108 (193)
T KOG0093|consen   94 AMGFILMYDITNEES  108 (193)
T ss_pred             cceEEEEEecCCHHH
Confidence            999999999999886

>cd04120 Rab12 Rab12 subfamily

Probab=99.91  E-value=9.1e-24  Score=153.63  Aligned_cols=87  Identities=46%  Similarity=0.924  Sum_probs=82.4

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +.|+++|+.|||||||+++|+.+.|..++.+|++.++....+.++++.+.+++|||+|+++|..+++.|++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999999999999999988888889999999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |++|++|
T Consensus        81 Dvtd~~S   87 (202)
T cd04120          81 DITKKET   87 (202)
T ss_pred             ECcCHHH
Confidence            9999875

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.90  E-value=1.5e-23  Score=150.31  Aligned_cols=89  Identities=27%  Similarity=0.508  Sum_probs=82.5

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|+++||||||+++|+.+.|..++.||++..+ ...+.+++..+.++||||+|+++|..+++.+++++|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4568999999999999999999999999999999999776 456788999999999999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        82 lvyDit~~~S   91 (182)
T cd04172          82 ICFDISRPET   91 (182)
T ss_pred             EEEECCCHHH
Confidence            9999999875

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04131 Rnd Rnd subfamily

Probab=99.90  E-value=2.6e-23  Score=148.57  Aligned_cols=86  Identities=26%  Similarity=0.519  Sum_probs=80.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++|+++.|+.++.||++..+ ...+.+++..+.+++|||+|+++|..+++.++++++++|+||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            7999999999999999999999999999999998776 456788999999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 dit~~~S   87 (178)
T cd04131          81 DISRPET   87 (178)
T ss_pred             ECCChhh
Confidence            9999876

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04121 Rab40 Rab40 subfamily

Probab=99.90  E-value=2.4e-23  Score=150.00  Aligned_cols=91  Identities=35%  Similarity=0.723  Sum_probs=84.9

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ++..+||+++|+.|||||||+.+|.++.|..++.++++.++....+.+++..+.+++||++|+++|..+++.+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999999988989999988888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      |+|||+++++|
T Consensus        83 llVfD~t~~~S   93 (189)
T cd04121          83 ILVYDITNRWS   93 (189)
T ss_pred             EEEEECcCHHH
Confidence            99999999865

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04133 Rop_like Rop subfamily

Probab=99.90  E-value=2.5e-23  Score=148.35  Aligned_cols=86  Identities=33%  Similarity=0.575  Sum_probs=80.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +|++++|+++||||||+.+|+.+.|..++.||++..+ ...+.+++..+.++||||+|+++|..+++.++++++++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6999999999999999999999999999999999876 455678999999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~S   87 (176)
T cd04133          81 SLISRAS   87 (176)
T ss_pred             EcCCHHH
Confidence            9999876

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01875 RhoG RhoG subfamily

Probab=99.90  E-value=2.7e-23  Score=150.11  Aligned_cols=87  Identities=26%  Similarity=0.500  Sum_probs=80.5

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|+++||||||+.+|..+.|..++.||++..+. ..+.++++.+.++||||+|+++|+.+++.+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            489999999999999999999999999999999997764 4567899999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||++|++|
T Consensus        82 ydit~~~S   89 (191)
T cd01875          82 FSIASPSS   89 (191)
T ss_pred             EECCCHHH
Confidence            99999865

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0091|consensus

Probab=99.90  E-value=2.7e-24  Score=146.64  Aligned_cols=92  Identities=52%  Similarity=0.901  Sum_probs=86.5

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      -+.+.++++++||+.||||||+++|..+.|.+-.+||+|+++..+.+++ .+.+++|++|||+|||+|+.+...||+++-
T Consensus         4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv   83 (213)
T KOG0091|consen    4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV   83 (213)
T ss_pred             ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence            3567899999999999999999999999999999999999998877776 678999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCC
Q psy13826        161 GALMVIDVSHVKE  173 (173)
Q Consensus       161 ~~ilv~d~t~~~S  173 (173)
                      ++++|||+||++|
T Consensus        84 gvllvyditnr~s   96 (213)
T KOG0091|consen   84 GVLLVYDITNRES   96 (213)
T ss_pred             ceEEEEeccchhh
Confidence            9999999999986

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.90  E-value=4.9e-23  Score=152.44  Aligned_cols=89  Identities=20%  Similarity=0.438  Sum_probs=82.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++|+++.|..++.||++.++. ..+.+++..+.++||||+|+++|..+++.+|++|+++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            45789999999999999999999999999999999998774 46788999999999999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        90 lVyDit~~~S   99 (232)
T cd04174          90 LCFDISRPET   99 (232)
T ss_pred             EEEECCChHH
Confidence            9999999875

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04128 Spg1 Spg1p

Probab=99.89  E-value=5e-23  Score=147.63  Aligned_cols=87  Identities=29%  Similarity=0.555  Sum_probs=82.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +|++++|++|||||||+++|+++.|..++.||++.++....+.+++..+.+++||++|+++|..+++.+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999999999999999888788889999999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 D~t~~~s   87 (182)
T cd04128          81 DLTRKST   87 (182)
T ss_pred             ECcCHHH
Confidence            9999864

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0088|consensus

Probab=99.89  E-value=3.2e-24  Score=145.61  Aligned_cols=93  Identities=38%  Similarity=0.667  Sum_probs=88.1

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ......||++++|...||||||+-||+.+.|...+-.|+..++..+.+.+.+.+..|.||||+||++|+.+.|.||++++
T Consensus         8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSn   87 (218)
T KOG0088|consen    8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSN   87 (218)
T ss_pred             cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCC
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCC
Q psy13826        161 GALMVIDVSHVKE  173 (173)
Q Consensus       161 ~~ilv~d~t~~~S  173 (173)
                      ++++|||+||++|
T Consensus        88 GalLVyDITDrdS  100 (218)
T KOG0088|consen   88 GALLVYDITDRDS  100 (218)
T ss_pred             ceEEEEeccchHH
Confidence            9999999999986

>cd04122 Rab14 Rab14 subfamily

Probab=99.89  E-value=1.2e-22  Score=143.26  Aligned_cols=88  Identities=88%  Similarity=1.412  Sum_probs=82.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++|++++|...+.+|++.++....+.+++..+.+.+||++|++++..+++.++++++++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        82 ~d~~~~~s   89 (166)
T cd04122          82 YDITRRST   89 (166)
T ss_pred             EECCCHHH
Confidence            99999764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.89  E-value=1.2e-22  Score=147.52  Aligned_cols=87  Identities=23%  Similarity=0.522  Sum_probs=80.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-----CeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-----GEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      +||+++|+++||||||+++|+++.|..++.+|++.++..+.+.++     ++.+.++|||++|+++|..+++.+|+++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999999999999988877766664     578999999999999999999999999999


Q ss_pred             EEEEEeCCCCCC
Q psy13826        162 ALMVIDVSHVKE  173 (173)
Q Consensus       162 ~ilv~d~t~~~S  173 (173)
                      +|+|||++|++|
T Consensus        81 iIlVyDvtn~~S   92 (202)
T cd04102          81 IILVHDLTNRKS   92 (202)
T ss_pred             EEEEEECcChHH
Confidence            999999999875

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.89  E-value=1.6e-22  Score=144.14  Aligned_cols=86  Identities=29%  Similarity=0.479  Sum_probs=79.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++|.++.|..++.||++..+. ..+.+++..+.++|||++|+++|..+++.+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999999999999998774 45677888999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (175)
T cd01874          81 SVVSPSS   87 (175)
T ss_pred             ECCCHHH
Confidence            9999864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.89  E-value=9.8e-23  Score=150.03  Aligned_cols=86  Identities=24%  Similarity=0.494  Sum_probs=80.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++|..+.|+.+|.||++.++. ..+.+++..+.|.||||+|++.|..+++.+|+++|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999999999999998774 56788999999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 dis~~~S   87 (222)
T cd04173          81 DISRPET   87 (222)
T ss_pred             ECCCHHH
Confidence            9999864

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.88  E-value=2.1e-22  Score=146.47  Aligned_cols=87  Identities=44%  Similarity=0.854  Sum_probs=81.4

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      +||+++|++|||||||+++|+++.+...+.||++.++....+.++ +..+.+.+||++|+++|..+++.++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999999999999988877777887 8899999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        81 ~D~t~~~s   88 (201)
T cd04107          81 FDVTRPST   88 (201)
T ss_pred             EECCCHHH
Confidence            99999864

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.88  E-value=3.6e-22  Score=141.70  Aligned_cols=86  Identities=43%  Similarity=0.864  Sum_probs=81.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      ||+++|++|||||||+++|+++.|..+|.||++.++....+.+++..+.+++||++|+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            89999999999999999999999999999999998887788888989999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13826        168 VSHVKE  173 (173)
Q Consensus       168 ~t~~~S  173 (173)
                      +++++|
T Consensus        82 ~~~~~s   87 (170)
T cd04108          82 LTDVAS   87 (170)
T ss_pred             CcCHHH
Confidence            998653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.88  E-value=5e-22  Score=146.36  Aligned_cols=91  Identities=32%  Similarity=0.490  Sum_probs=84.4

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||+++|+.+.|...+.+|++.++....+..++..+.+.+||++|+++|..+++.+++.++++
T Consensus        10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   89 (219)
T PLN03071         10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (219)
T ss_pred             CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence            36779999999999999999999999999999999999988877777788889999999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      |+|||+++++|
T Consensus        90 ilvfD~~~~~s  100 (219)
T PLN03071         90 IIMFDVTARLT  100 (219)
T ss_pred             EEEEeCCCHHH
Confidence            99999999864

>KOG0097|consensus

Probab=99.88  E-value=2e-22  Score=134.74  Aligned_cols=93  Identities=87%  Similarity=1.426  Sum_probs=88.2

Q ss_pred             CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q psy13826         80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA  159 (173)
Q Consensus        80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~  159 (173)
                      ...+.+.||.+++|+.|||||+|+++|....|..+-+.|+|+++.++.+++.++.++++||||+||++|+...+.||+.+
T Consensus         5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga   84 (215)
T KOG0097|consen    5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   84 (215)
T ss_pred             ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeCCCCC
Q psy13826        160 AGALMVIDVSHVK  172 (173)
Q Consensus       160 ~~~ilv~d~t~~~  172 (173)
                      .+.++|||+|.+.
T Consensus        85 agalmvyditrrs   97 (215)
T KOG0097|consen   85 AGALMVYDITRRS   97 (215)
T ss_pred             cceeEEEEehhhh
Confidence            9999999998764

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.87  E-value=6.5e-22  Score=139.09  Aligned_cols=87  Identities=29%  Similarity=0.716  Sum_probs=81.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++++++++...+.||++.++....+.+++..+.+++|||+|++.+..+++.+++.++++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999999999999999988888888999999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 D~~~~~s   87 (168)
T cd04119          81 DVTDRQS   87 (168)
T ss_pred             ECCCHHH
Confidence            9998753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.87  E-value=6.5e-22  Score=139.74  Aligned_cols=89  Identities=58%  Similarity=1.066  Sum_probs=82.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||++++.++.|...+.||.+.++....+..++..+.+++||++|++++..++..+++++|++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999999999999999999999988877788888888999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        82 v~d~~~~~s   90 (167)
T cd01867          82 VYDITDEKS   90 (167)
T ss_pred             EEECcCHHH
Confidence            999998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04117 Rab15 Rab15 subfamily

Probab=99.87  E-value=1e-21  Score=138.11  Aligned_cols=87  Identities=49%  Similarity=0.957  Sum_probs=81.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++|.+++|...+.||++.++....+.+++..+.+++||++|++++..+++.+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999999999999998887778888888999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (161)
T cd04117          81 DISSERS   87 (161)
T ss_pred             ECCCHHH
Confidence            9999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.87  E-value=9.7e-22  Score=139.99  Aligned_cols=86  Identities=28%  Similarity=0.507  Sum_probs=78.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+.+|+.+.|..++.||++..+ ...+.+++..+.+.||||+|++.|..+++.+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            6999999999999999999999999999999987655 445678889999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (174)
T cd01871          81 SLVSPAS   87 (174)
T ss_pred             ECCCHHH
Confidence            9999875

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.87  E-value=1.1e-21  Score=139.34  Aligned_cols=87  Identities=30%  Similarity=0.460  Sum_probs=80.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++|.+++|...+.||++..+ ...+.+++..+.+.+||++|+++|..+++.+++.+|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            37999999999999999999999999999999998666 44567889999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        81 ~d~~~~~S   88 (172)
T cd04141          81 YSVTDRHS   88 (172)
T ss_pred             EECCchhH
Confidence            99999875

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04136 Rap_like Rap-like subfamily

Probab=99.87  E-value=1e-21  Score=137.69  Aligned_cols=86  Identities=34%  Similarity=0.579  Sum_probs=78.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++++.+.|...+.||++..+ ...+.+++..+.+++||++|+++|..+++.++++++++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999999988999987443 556778888999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (163)
T cd04136          81 SITSQSS   87 (163)
T ss_pred             ECCCHHH
Confidence            9998753

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04110 Rab35 Rab35 subfamily

Probab=99.87  E-value=1.5e-21  Score=141.88  Aligned_cols=90  Identities=52%  Similarity=0.938  Sum_probs=83.1

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      +..+||+++|++|||||||+++|++++|...+.+|++.++....+.+++..+.+.+||++|++.+..++..+++++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            45799999999999999999999999998889999998887777788888899999999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        84 lv~D~~~~~s   93 (199)
T cd04110          84 VVYDVTNGES   93 (199)
T ss_pred             EEEECCCHHH
Confidence            9999999864

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.87  E-value=1.6e-21  Score=137.36  Aligned_cols=88  Identities=56%  Similarity=0.998  Sum_probs=81.9

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++++++.+...+.+|.+.++....+.+++..+.+++||++|++++..++..+++.+|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999999888899999888878888888899999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        82 ~d~~~~~s   89 (166)
T cd01869          82 YDVTDQES   89 (166)
T ss_pred             EECcCHHH
Confidence            99999764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PLN03110 Rab GTPase; Provisional

Probab=99.86  E-value=2.7e-21  Score=142.15  Aligned_cols=92  Identities=54%  Similarity=0.991  Sum_probs=85.4

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      ..+..+||+++|++|||||||+++|.++.+..++.+|++.++....+.+++..+.++|||++|++++..++..+++.+++
T Consensus         8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~   87 (216)
T PLN03110          8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG   87 (216)
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence            35577999999999999999999999999988899999999888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCC
Q psy13826        162 ALMVIDVSHVKE  173 (173)
Q Consensus       162 ~ilv~d~t~~~S  173 (173)
                      +|+|||+++++|
T Consensus        88 ~ilv~d~~~~~s   99 (216)
T PLN03110         88 ALLVYDITKRQT   99 (216)
T ss_pred             EEEEEECCChHH
Confidence            999999998764

>PLN00023 GTP-binding protein; Provisional

Probab=99.86  E-value=1.5e-21  Score=149.16  Aligned_cols=93  Identities=27%  Similarity=0.529  Sum_probs=83.0

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-------------CeEEEEEEEeCCCccc
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-------------GEKIKLQIWDTAGQER  147 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~D~~g~~~  147 (173)
                      ......+||+++|+.|||||||+++|+++.|...+.+|+|.++....+.++             ++.+.++|||++|+++
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            334567999999999999999999999999999999999998877766664             3578999999999999


Q ss_pred             cccchhhhhcCCCEEEEEEeCCCCCC
Q psy13826        148 FRAVTRSYYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       148 ~~~~~~~~~~~~~~~ilv~d~t~~~S  173 (173)
                      |..+++.||++++++|+|||+++++|
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~S  121 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRT  121 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHH
Confidence            99999999999999999999999764

>cd04176 Rap2 Rap2 subgroup

Probab=99.86  E-value=1.5e-21  Score=137.09  Aligned_cols=87  Identities=32%  Similarity=0.503  Sum_probs=78.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++++.+++...+.+|.+. +....+.+++..+.++|||++|+++|..+++.+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-eEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            379999999999999999999999999888888863 4456777888899999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        80 ~d~~~~~s   87 (163)
T cd04176          80 YSLVNQQT   87 (163)
T ss_pred             EECCCHHH
Confidence            99999764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04116 Rab9 Rab9 subfamily

Probab=99.86  E-value=2.4e-21  Score=137.00  Aligned_cols=90  Identities=46%  Similarity=0.788  Sum_probs=83.2

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.++|||++|++++..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            35699999999999999999999999999888899998887777888999999999999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        83 ~v~d~~~~~s   92 (170)
T cd04116          83 LTFAVDDSQS   92 (170)
T ss_pred             EEEECCCHHH
Confidence            9999998764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01865 Rab3 Rab3 subfamily

Probab=99.86  E-value=1.8e-21  Score=137.18  Aligned_cols=87  Identities=39%  Similarity=0.832  Sum_probs=80.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||++++.+++|...+.||.+.++....+..++..+.+++||++|++++..++..++++++++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999999899999998887777777888899999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        82 d~~~~~s   88 (165)
T cd01865          82 DITNEES   88 (165)
T ss_pred             ECCCHHH
Confidence            9998754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04127 Rab27A Rab27a subfamily

Probab=99.86  E-value=1.6e-21  Score=139.07  Aligned_cols=90  Identities=41%  Similarity=0.878  Sum_probs=80.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC----------CeEEEEEEEeCCCccccccchh
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH----------GEKIKLQIWDTAGQERFRAVTR  153 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~l~i~D~~g~~~~~~~~~  153 (173)
                      ++.+||+++|++|||||||++++.++.+...+.+|++.++....+.+.          +..+.+++||++|+++|..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            356999999999999999999999999999999999988876666554          4578999999999999999999


Q ss_pred             hhhcCCCEEEEEEeCCCCCC
Q psy13826        154 SYYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       154 ~~~~~~~~~ilv~d~t~~~S  173 (173)
                      .+++++|++|+|||+++++|
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s  101 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQS  101 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHH
Confidence            99999999999999998764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04109 Rab28 Rab28 subfamily

Probab=99.86  E-value=1.5e-21  Score=143.37  Aligned_cols=87  Identities=31%  Similarity=0.591  Sum_probs=80.4

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      +||+++|++|||||||+++|+++.|...+.||++.++....+.+++ ..+.++|||++|++.+..+++.+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999999999999988777777754 579999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        81 ~D~t~~~s   88 (215)
T cd04109          81 YDVTNSQS   88 (215)
T ss_pred             EECCCHHH
Confidence            99999864

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04124 RabL2 RabL2 subfamily

Probab=99.86  E-value=2.6e-21  Score=135.95  Aligned_cols=86  Identities=35%  Similarity=0.601  Sum_probs=79.4

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||++++++++|...+.++.+.++....+.+++..+.+++|||+|+++|..+++.+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999998888888887776667778889999999999999999999999999999999999


Q ss_pred             eCCCCC
Q psy13826        167 DVSHVK  172 (173)
Q Consensus       167 d~t~~~  172 (173)
                      |+++++
T Consensus        81 d~~~~~   86 (161)
T cd04124          81 DVTRKI   86 (161)
T ss_pred             ECCCHH
Confidence            999875

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01892 Miro2 Miro2 subfamily

Probab=99.86  E-value=2.4e-21  Score=137.34  Aligned_cols=90  Identities=24%  Similarity=0.335  Sum_probs=82.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ...+||+++|++|||||||+++|+++.|. .++.||++.++....+.+++..+.+.+||++|++.+..+++.+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35799999999999999999999999998 88999999888777788888889999999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      |+|||+++++|
T Consensus        82 llv~d~~~~~s   92 (169)
T cd01892          82 CLVYDSSDPKS   92 (169)
T ss_pred             EEEEeCCCHHH
Confidence            99999998753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.86  E-value=3.4e-21  Score=136.12  Aligned_cols=87  Identities=32%  Similarity=0.616  Sum_probs=80.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++++.+.+...+.+|++.++....+..++..+.+.+|||+|++++..+++.+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999999998889999998887777777888999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (166)
T cd00877          81 DVTSRVT   87 (166)
T ss_pred             ECCCHHH
Confidence            9998764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.86  E-value=1.5e-21  Score=136.86  Aligned_cols=86  Identities=33%  Similarity=0.711  Sum_probs=82.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      ||+++|+++||||||+++|.++.|...+.+|.+.+.....+.+++..+.+++||++|+++|..+++.+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999988888899999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13826        168 VSHVKE  173 (173)
Q Consensus       168 ~t~~~S  173 (173)
                      ++|++|
T Consensus        81 ~~~~~S   86 (162)
T PF00071_consen   81 VTDEES   86 (162)
T ss_dssp             TTBHHH
T ss_pred             cccccc
Confidence            999764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01866 Rab2 Rab2 subfamily

Probab=99.86  E-value=3.1e-21  Score=136.42  Aligned_cols=90  Identities=67%  Similarity=1.165  Sum_probs=83.4

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      +..+||+++|++|||||||+++++++++...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++|
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999999998888999999888888888998999999999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        82 ~v~d~~~~~s   91 (168)
T cd01866          82 LVYDITRRET   91 (168)
T ss_pred             EEEECCCHHH
Confidence            9999998754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PTZ00369 Ras-like protein; Provisional

Probab=99.86  E-value=2.3e-21  Score=139.73  Aligned_cols=88  Identities=32%  Similarity=0.508  Sum_probs=80.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++|+++.|...+.||++..+ ...+.+++..+.+++|||+|+++|..+++.+++.++++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            358999999999999999999999999989999998776 4567788999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        83 v~D~s~~~s   91 (189)
T PTZ00369         83 VYSITSRSS   91 (189)
T ss_pred             EEECCCHHH
Confidence            999999754

>cd04111 Rab39 Rab39 subfamily

Probab=99.86  E-value=3.3e-21  Score=141.26  Aligned_cols=88  Identities=53%  Similarity=0.941  Sum_probs=80.8

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      .+||+++|++|||||||+++|+++.+...+.+|++.++....+.+ ++..+.+++||++|++++..++..+++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999999888999998887777776 4678999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||++|++|
T Consensus        82 v~D~~~~~S   90 (211)
T cd04111          82 VFDITNRES   90 (211)
T ss_pred             EEECCCHHH
Confidence            999999764

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=99.85  E-value=3.4e-21  Score=135.50  Aligned_cols=87  Identities=32%  Similarity=0.562  Sum_probs=79.2

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++++.+.+...+.||++..+ ...+.+++..+.+++|||+|+++|..+++.+++.+|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            37999999999999999999999999888999998766 45677888899999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        80 ~d~~~~~s   87 (164)
T cd04175          80 YSITAQST   87 (164)
T ss_pred             EECCCHHH
Confidence            99998753

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01864 Rab19 Rab19 subfamily

Probab=99.85  E-value=5.1e-21  Score=134.77  Aligned_cols=89  Identities=47%  Similarity=0.940  Sum_probs=82.2

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999999998888999888877788888888999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        82 v~d~~~~~s   90 (165)
T cd01864          82 AYDITRRSS   90 (165)
T ss_pred             EEECcCHHH
Confidence            999999754

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.85  E-value=5.1e-21  Score=134.11  Aligned_cols=87  Identities=39%  Similarity=0.752  Sum_probs=80.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH--GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      +||+++|+++||||||+++++++.+...+.+|++.++....+.+.  +..+.+++||++|+++|..+++.+++.++++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999999999999988876677776  778999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        81 v~d~~~~~s   89 (162)
T cd04106          81 VFSTTDRES   89 (162)
T ss_pred             EEECCCHHH
Confidence            999998764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.85  E-value=7.1e-21  Score=134.82  Aligned_cols=88  Identities=48%  Similarity=0.894  Sum_probs=81.3

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCCEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AVTRSYYRGAAGALM  164 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~~il  164 (173)
                      .+||+++|++|||||||+++++.+.+...+.++++.++....+.+++..+.+++||++|++++. .+++.+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4799999999999999999999999998899999988888888889999999999999999887 578899999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        82 v~d~~~~~s   90 (170)
T cd04115          82 VYDVTNMAS   90 (170)
T ss_pred             EEECCCHHH
Confidence            999999864

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04134 Rho3 Rho3 subfamily

Probab=99.85  E-value=4.7e-21  Score=138.13  Aligned_cols=85  Identities=31%  Similarity=0.460  Sum_probs=78.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      ||+++|++|||||||+++|.++.|...+.||++.++. ..+.+++..+.+.|||++|++.|..+++.+++.++++|+|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            8999999999999999999999999999999987764 456678888999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13826        168 VSHVKE  173 (173)
Q Consensus       168 ~t~~~S  173 (173)
                      +++++|
T Consensus        81 v~~~~s   86 (189)
T cd04134          81 VDSPDS   86 (189)
T ss_pred             CCCHHH
Confidence            999864

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01868 Rab11_like Rab11-like

Probab=99.85  E-value=5.9e-21  Score=134.33  Aligned_cols=89  Identities=58%  Similarity=1.003  Sum_probs=82.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|+++||||||+++++++.+...+.|+.+.++....+..++..+.+.+||++|++++..+++.+++.++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            45899999999999999999999999988899999988888888888888999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        82 v~d~~~~~s   90 (165)
T cd01868          82 VYDITKKQT   90 (165)
T ss_pred             EEECcCHHH
Confidence            999998653

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04125 RabA_like RabA-like subfamily

Probab=99.85  E-value=6.2e-21  Score=137.26  Aligned_cols=87  Identities=54%  Similarity=0.917  Sum_probs=81.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++|.++.|...+.+|.+.++....+.+++..+.+++||++|++++..+++.+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998889999998887778888888999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (188)
T cd04125          81 DVTDQES   87 (188)
T ss_pred             ECcCHHH
Confidence            9998764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.85  E-value=6.5e-21  Score=136.90  Aligned_cols=86  Identities=31%  Similarity=0.516  Sum_probs=77.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      +||+++|++|||||||+++|+++.+...+.||++.++.. .+... +..+.+.+|||+|+++|..+++.+++.+|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999999999999887744 34454 7789999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        80 ~d~~~~~s   87 (187)
T cd04132          80 YAVDNPTS   87 (187)
T ss_pred             EECCCHHH
Confidence            99999864

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.85  E-value=7.5e-21  Score=132.89  Aligned_cols=86  Identities=34%  Similarity=0.561  Sum_probs=78.1

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++|+++.+...+.||.+..+ ...+.+++..+.+.+||++|++++..+++.+++.++++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999999999999988665 45567888888999999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      ||+++++
T Consensus        80 ~~~~~~~   86 (162)
T cd04138          80 FAINSRK   86 (162)
T ss_pred             EECCCHH
Confidence            9999865

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04113 Rab4 Rab4 subfamily

Probab=99.85  E-value=9.8e-21  Score=132.69  Aligned_cols=87  Identities=69%  Similarity=1.189  Sum_probs=81.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|+++||||||++++.++++...+.++.+.++....+.+++..+.+++||++|+++|..+++.+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999999889999998888888888888999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (161)
T cd04113          81 DITNRTS   87 (161)
T ss_pred             ECCCHHH
Confidence            9998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04118 Rab24 Rab24 subfamily

Probab=99.85  E-value=1.2e-20  Score=136.25  Aligned_cols=87  Identities=34%  Similarity=0.691  Sum_probs=80.2

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      +||+++|++|||||||+++|+++.|.. .+.+|++.++....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            489999999999999999999999875 6889999888777888999999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        81 ~d~~~~~s   88 (193)
T cd04118          81 YDLTDSSS   88 (193)
T ss_pred             EECCCHHH
Confidence            99998754

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.84  E-value=1.3e-20  Score=133.85  Aligned_cols=86  Identities=27%  Similarity=0.463  Sum_probs=77.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +|++++|++|||||||+++|.++.|..++.||....+ ...+.+++..+.+++||++|+++|..+++.+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNF-SVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-eEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            5899999999999999999999999999999875444 456778888899999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        80 d~~~~~s   86 (173)
T cd04130          80 SVVNPSS   86 (173)
T ss_pred             ECCCHHH
Confidence            9999864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04144 Ras2 Ras2 subfamily

Probab=99.84  E-value=6.9e-21  Score=137.33  Aligned_cols=85  Identities=29%  Similarity=0.522  Sum_probs=77.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      ||+++|++|||||||+++|+.+.|...+.+|++..+ ...+.+++..+.+++|||+|+++|..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999999988999988665 3455678888999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13826        168 VSHVKE  173 (173)
Q Consensus       168 ~t~~~S  173 (173)
                      +++++|
T Consensus        80 ~~~~~s   85 (190)
T cd04144          80 ITSRST   85 (190)
T ss_pred             CCCHHH
Confidence            999764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.84  E-value=7.7e-21  Score=142.24  Aligned_cols=86  Identities=23%  Similarity=0.473  Sum_probs=78.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++|++++|...+.||++ ++....+.+++..+.++||||+|++.|..+++.++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999988999987 445667788899999999999999999999898999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        80 dv~~~~S   86 (247)
T cd04143          80 SLDNRES   86 (247)
T ss_pred             eCCCHHH
Confidence            9999764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.84  E-value=1e-20  Score=137.47  Aligned_cols=82  Identities=29%  Similarity=0.567  Sum_probs=77.4

Q ss_pred             EeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826         92 IGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus        92 ~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +|++|||||||+++|+.+.|...+.||+|.++....+.++++.+.+.||||+|+++|..+++.||++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999989999999999888888899999999999999999999999999999999999999998


Q ss_pred             CC
Q psy13826        172 KE  173 (173)
Q Consensus       172 ~S  173 (173)
                      +|
T Consensus        81 ~S   82 (200)
T smart00176       81 VT   82 (200)
T ss_pred             HH
Confidence            64

Ran is involved in the active transport of proteins through nuclear pores.

>PLN03108 Rab family protein; Provisional

Probab=99.84  E-value=2.2e-20  Score=136.79  Aligned_cols=90  Identities=66%  Similarity=1.135  Sum_probs=83.4

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      +..+||+++|++|||||||++++++.++...+.+|++.++....+.+++..+.+.+||++|++.+..+++.+++.+|++|
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45699999999999999999999999998888999999888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        84 lv~D~~~~~s   93 (210)
T PLN03108         84 LVYDITRRET   93 (210)
T ss_pred             EEEECCcHHH
Confidence            9999998764

>cd01861 Rab6 Rab6 subfamily

Probab=99.84  E-value=2.4e-20  Score=130.59  Aligned_cols=87  Identities=34%  Similarity=0.688  Sum_probs=80.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|+++||||||++++.+..+...+.++.+.++....+.+++..+.+++||++|++++..+++.+++.++++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888999998888888888888899999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (161)
T cd01861          81 DITNRQS   87 (161)
T ss_pred             ECcCHHH
Confidence            9998754

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PLN03118 Rab family protein; Provisional

Probab=99.83  E-value=4e-20  Score=135.47  Aligned_cols=92  Identities=49%  Similarity=0.840  Sum_probs=82.3

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ......+||+++|++|||||||+++|+++.+ ..+.++.+.++....+.+++..+.+.+|||+|+++|..++..+++.+|
T Consensus         9 ~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   87 (211)
T PLN03118          9 SGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ   87 (211)
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            4455679999999999999999999999877 467889988887777788888899999999999999999999999999


Q ss_pred             EEEEEEeCCCCCC
Q psy13826        161 GALMVIDVSHVKE  173 (173)
Q Consensus       161 ~~ilv~d~t~~~S  173 (173)
                      ++|+|||+++++|
T Consensus        88 ~~vlv~D~~~~~s  100 (211)
T PLN03118         88 GIILVYDVTRRET  100 (211)
T ss_pred             EEEEEEECCCHHH
Confidence            9999999998764

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.83  E-value=3.2e-20  Score=130.20  Aligned_cols=88  Identities=41%  Similarity=0.775  Sum_probs=81.5

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|+++||||+|+++++++++...+.++.+.++....+.+++..+.+.+||++|++++...++.+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999999888889999888888888999999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        81 ~d~~~~~s   88 (163)
T cd01860          81 YDITSEES   88 (163)
T ss_pred             EECcCHHH
Confidence            99998753

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04112 Rab26 Rab26 subfamily

Probab=99.83  E-value=2.8e-20  Score=134.25  Aligned_cols=87  Identities=47%  Similarity=0.935  Sum_probs=79.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      +||+++|++|||||||+++|.++++.. .+.+|++.++....+.+++..+.+.|||++|++++..++..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999999864 6788988888777778899999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        81 ~D~~~~~s   88 (191)
T cd04112          81 YDITNKAS   88 (191)
T ss_pred             EECCCHHH
Confidence            99998753

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0393|consensus

Probab=99.83  E-value=4e-21  Score=136.85  Aligned_cols=88  Identities=28%  Similarity=0.509  Sum_probs=81.9

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ..+|++++|+.+||||+|+..|..+.|+++|.||+-+++ ...+.++ ++.+.+.+|||+||+.|+.+++..|.++|+|+
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            468999999999999999999999999999999999766 5567784 99999999999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +||++.+++|
T Consensus        82 ~cfsv~~p~S   91 (198)
T KOG0393|consen   82 LCFSVVSPES   91 (198)
T ss_pred             EEEEcCChhh
Confidence            9999999986

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.83  E-value=3.1e-20  Score=131.69  Aligned_cols=84  Identities=31%  Similarity=0.556  Sum_probs=76.4

Q ss_pred             EEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV  168 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~  168 (173)
                      |+++|++|||||||+++|+++.|...+.++.+..+. ..+.+++..+.+.+|||+|++.|..+++.+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            589999999999999999999999999999876664 4567788999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy13826        169 SHVKE  173 (173)
Q Consensus       169 t~~~S  173 (173)
                      ++++|
T Consensus        80 ~~~~s   84 (174)
T smart00174       80 DSPAS   84 (174)
T ss_pred             CCHHH
Confidence            99864

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.83  E-value=3.7e-20  Score=130.05  Aligned_cols=87  Identities=26%  Similarity=0.516  Sum_probs=77.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC--CCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      +||+++|++|||||||++++..+  .+..++.+|.+.++....+.++ +..+.+.+||++|++.+..+++.+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  6888999999988876666664 57799999999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        81 ~v~d~~~~~s   90 (164)
T cd04101          81 LVYDVSNKAS   90 (164)
T ss_pred             EEEECcCHHH
Confidence            9999998753

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.83  E-value=3e-20  Score=130.54  Aligned_cols=86  Identities=38%  Similarity=0.631  Sum_probs=77.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++++++.+...+.+|.+..+ ...+.+++..+.+++||++|++++..+++.+++.++++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999999988888887554 456677888999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        80 d~~~~~s   86 (164)
T smart00173       80 SITDRQS   86 (164)
T ss_pred             ECCCHHH
Confidence            9998753

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04140 ARHI_like ARHI subfamily

Probab=99.83  E-value=4.5e-20  Score=130.07  Aligned_cols=86  Identities=27%  Similarity=0.425  Sum_probs=77.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++++++.|...+.||.+..+ ...+..+...+.+.+||++|+++|..++..+++.++++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999999888888887655 445566778899999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (165)
T cd04140          81 SVTSKQS   87 (165)
T ss_pred             ECCCHHH
Confidence            9999764

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0081|consensus

Probab=99.83  E-value=4e-22  Score=135.52  Aligned_cols=93  Identities=40%  Similarity=0.829  Sum_probs=85.4

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC---------CeEEEEEEEeCCCccccccc
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH---------GEKIKLQIWDTAGQERFRAV  151 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~l~i~D~~g~~~~~~~  151 (173)
                      -.+++.+|.+.+|++|||||+++.+|..+.|......|+|+++..+.+-++         +.++.+++|||+|||+|+.+
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            457788999999999999999999999999999999999999988877663         45789999999999999999


Q ss_pred             hhhhhcCCCEEEEEEeCCCCCC
Q psy13826        152 TRSYYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       152 ~~~~~~~~~~~ilv~d~t~~~S  173 (173)
                      ...++++|-+++++||+|+.+|
T Consensus        84 TTAFfRDAMGFlLiFDlT~eqS  105 (219)
T KOG0081|consen   84 TTAFFRDAMGFLLIFDLTSEQS  105 (219)
T ss_pred             HHHHHHhhccceEEEeccchHH
Confidence            9999999999999999999876

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=3.7e-19  Score=144.40  Aligned_cols=87  Identities=24%  Similarity=0.284  Sum_probs=61.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccch-
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----------RFRAVT-  152 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~-  152 (173)
                      ..+||+++|.+|||||||++++++.++. ....+....+.....+.+++..  +.+|||+|..          .|..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999988752 2222333333334455666655  4699999953          333332 


Q ss_pred             hhhhcCCCEEEEEEeCCCCCC
Q psy13826        153 RSYYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       153 ~~~~~~~~~~ilv~d~t~~~S  173 (173)
                      ..+++.+|++|+|||+++..|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s  308 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPIS  308 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCC
Confidence            236789999999999998643

>KOG0083|consensus

Probab=99.82  E-value=1.7e-21  Score=129.00  Aligned_cols=83  Identities=43%  Similarity=0.885  Sum_probs=77.7

Q ss_pred             EEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCC
Q psy13826         91 IIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS  169 (173)
Q Consensus        91 l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t  169 (173)
                      ++|++++|||+|+-||..+.|.. +..+|+|+++..+.+..+++.+++++|||+|||+|+.....||++||+++++||++
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            68999999999999999888764 46789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy13826        170 HVKE  173 (173)
Q Consensus       170 ~~~S  173 (173)
                      |+.|
T Consensus        82 nkas   85 (192)
T KOG0083|consen   82 NKAS   85 (192)
T ss_pred             cchh
Confidence            9876

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.82  E-value=8.3e-20  Score=128.10  Aligned_cols=86  Identities=38%  Similarity=0.600  Sum_probs=77.8

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++++++.+...+.++.+..+ .....+++..+.+++|||+|++++..+++.+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            47999999999999999999999999888888888655 44566888889999999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      ||+++++
T Consensus        81 ~d~~~~~   87 (164)
T cd04145          81 FSVTDRG   87 (164)
T ss_pred             EECCCHH
Confidence            9999875

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.82  E-value=9.6e-20  Score=127.71  Aligned_cols=87  Identities=61%  Similarity=1.029  Sum_probs=80.4

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999998888899998888888888888899999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (164)
T smart00175       81 DITNRES   87 (164)
T ss_pred             ECCCHHH
Confidence            9998753

Rab GTPases are implicated in vesicle trafficking.

>cd01862 Rab7 Rab7 subfamily

Probab=99.82  E-value=1e-19  Score=128.55  Aligned_cols=86  Identities=45%  Similarity=0.803  Sum_probs=79.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888889988887777888889999999999999999999999999999999999


Q ss_pred             eCCCCC
Q psy13826        167 DVSHVK  172 (173)
Q Consensus       167 d~t~~~  172 (173)
                      |+++++
T Consensus        81 d~~~~~   86 (172)
T cd01862          81 DVTNPK   86 (172)
T ss_pred             ECCCHH
Confidence            998865

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01863 Rab18 Rab18 subfamily

Probab=99.82  E-value=1.1e-19  Score=127.27  Aligned_cols=87  Identities=55%  Similarity=0.967  Sum_probs=80.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +|++++|++|||||||++++.+..+...+.|+.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999988888999998887777788888899999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (161)
T cd01863          81 DVTRRDT   87 (161)
T ss_pred             ECCCHHH
Confidence            9998753

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04177 RSR1 RSR1 subgroup

Probab=99.82  E-value=1e-19  Score=128.58  Aligned_cols=86  Identities=34%  Similarity=0.596  Sum_probs=78.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+.+++||++|+++|..+++.+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            7999999999999999999999999888999988655 566678888899999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |++++++
T Consensus        81 ~~~~~~s   87 (168)
T cd04177          81 SVTSEAS   87 (168)
T ss_pred             ECCCHHH
Confidence            9998753

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04135 Tc10 TC10 subfamily

Probab=99.81  E-value=1.7e-19  Score=127.95  Aligned_cols=86  Identities=27%  Similarity=0.458  Sum_probs=77.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++|++++|...+.|+.+..+ ...+.+++..+.+.+||++|++.|..+++.+++.++++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999999888888887554 446678888899999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        80 ~~~~~~s   86 (174)
T cd04135          80 SVVNPAS   86 (174)
T ss_pred             ECCCHHH
Confidence            9999864

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04126 Rab20 Rab20 subfamily

Probab=99.81  E-value=1.3e-19  Score=133.42  Aligned_cols=82  Identities=39%  Similarity=0.727  Sum_probs=72.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|+++||||||+++|++++|.. +.||++.++....+    ..+.+.|||++|+++|..+++.+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999875 67888876644322    5678999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        76 Dvt~~~S   82 (220)
T cd04126          76 DVSNVQS   82 (220)
T ss_pred             ECCCHHH
Confidence            9999864

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04142 RRP22 RRP22 subfamily

Probab=99.81  E-value=1.3e-19  Score=131.58  Aligned_cols=87  Identities=21%  Similarity=0.340  Sum_probs=74.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhhcC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV--------TRSYYRG  158 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--------~~~~~~~  158 (173)
                      +||+++|++|||||||+++|++++|...+.||.+.++....+.++++.+.+++|||+|.+.+...        ...+++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999999999999987776666778899999999999997654321        2345789


Q ss_pred             CCEEEEEEeCCCCCC
Q psy13826        159 AAGALMVIDVSHVKE  173 (173)
Q Consensus       159 ~~~~ilv~d~t~~~S  173 (173)
                      +|++|+|||+++++|
T Consensus        81 ad~iilv~D~~~~~S   95 (198)
T cd04142          81 SRAFILVYDICSPDS   95 (198)
T ss_pred             CCEEEEEEECCCHHH
Confidence            999999999999864

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.81  E-value=1.3e-19  Score=128.67  Aligned_cols=86  Identities=31%  Similarity=0.529  Sum_probs=77.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      .||+++|++|||||||+++|+++.|...+.||.+..+. ..+.+++..+.+.+|||+|++.|..+++.+++++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            58999999999999999999999999889999887664 35677888999999999999999998888999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 ~~~~~~s   87 (175)
T cd01870          81 SIDSPDS   87 (175)
T ss_pred             ECCCHHH
Confidence            9998753

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.81  E-value=2.2e-19  Score=131.85  Aligned_cols=91  Identities=31%  Similarity=0.496  Sum_probs=83.2

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      .....+|++++|++|||||||+++++.+.+...+.+|++.++....+..+++.+.+++||++|+++|..++..+++.+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            34456899999999999999999999999999999999999888777778899999999999999999999999999999


Q ss_pred             EEEEEeCCCCC
Q psy13826        162 ALMVIDVSHVK  172 (173)
Q Consensus       162 ~ilv~d~t~~~  172 (173)
                      +++|||+++++
T Consensus        85 ~i~v~d~~~~~   95 (215)
T PTZ00132         85 AIIMFDVTSRI   95 (215)
T ss_pred             EEEEEECcCHH
Confidence            99999999764

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.80  E-value=9.7e-20  Score=130.48  Aligned_cols=84  Identities=21%  Similarity=0.493  Sum_probs=72.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|+++||||||++++..+++. .+.||++.++.  .+  +...+.+++||++|++++..+++.+++++|++|+
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            3479999999999999999999988886 47889887653  23  3346789999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        91 V~D~s~~~s   99 (181)
T PLN00223         91 VVDSNDRDR   99 (181)
T ss_pred             EEeCCcHHH
Confidence            999998764

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.80  E-value=1.4e-19  Score=127.06  Aligned_cols=82  Identities=23%  Similarity=0.552  Sum_probs=70.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|+++||||||++++..+++. .+.||++.++.  .+..  ..+.+.+||++|++++..+++.+++++|++|+||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999988887 47888886653  2333  4688999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        76 D~~~~~s   82 (159)
T cd04150          76 DSNDRER   82 (159)
T ss_pred             eCCCHHH
Confidence            9998753

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04149 Arf6 Arf6 subfamily

Probab=99.80  E-value=1.6e-19  Score=127.88  Aligned_cols=84  Identities=23%  Similarity=0.513  Sum_probs=71.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||++++..+++. .+.||++.++.  .+.  ...+.+++||++|++++..+++.+++++|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            3589999999999999999999988875 46788887653  222  356789999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        83 v~D~t~~~s   91 (168)
T cd04149          83 VVDSADRDR   91 (168)
T ss_pred             EEeCCchhh
Confidence            999999753

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.80  E-value=1.6e-19  Score=128.59  Aligned_cols=84  Identities=24%  Similarity=0.504  Sum_probs=72.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||++++..+++. .+.||++.++..  +..  ..+.+++||++|++++..+++.|+++++++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            3589999999999999999999988875 477898876643  233  45789999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        87 v~D~t~~~s   95 (175)
T smart00177       87 VVDSNDRDR   95 (175)
T ss_pred             EEECCCHHH
Confidence            999998753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.80  E-value=5.1e-19  Score=124.09  Aligned_cols=80  Identities=20%  Similarity=0.323  Sum_probs=68.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+.+|+.+.|...+.|+. ..+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            589999999999999999999999988777654 344 45678899999999999999975     35778999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |++|++|
T Consensus        74 d~~~~~s   80 (158)
T cd04103          74 SLENEAS   80 (158)
T ss_pred             ECCCHHH
Confidence            9999875

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.80  E-value=4.2e-19  Score=128.56  Aligned_cols=86  Identities=21%  Similarity=0.351  Sum_probs=68.3

Q ss_pred             eeEEEEEeCCCCChHHHHH-HHHhC-----CCCCCCCCceee-eeEEEE--------EEECCeEEEEEEEeCCCcccccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLH-QFTEQ-----KFMPDCPHTIGV-EFGTRI--------IEVHGEKIKLQIWDTAGQERFRA  150 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~-~~~~~-----~~~~~~~~t~~~-~~~~~~--------~~~~~~~~~l~i~D~~g~~~~~~  150 (173)
                      .+||+++|++|||||||+. ++.++     .|..++.||++. +.....        +.++++.+.++||||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 66554     355678899863 322221        25688999999999999975  3


Q ss_pred             chhhhhcCCCEEEEEEeCCCCCC
Q psy13826        151 VTRSYYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       151 ~~~~~~~~~~~~ilv~d~t~~~S  173 (173)
                      +.+.+|+++|++|+|||+++++|
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~S  102 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNS  102 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhH
Confidence            56678999999999999999875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04123 Rab21 Rab21 subfamily

Probab=99.80  E-value=5.5e-19  Score=123.42  Aligned_cols=87  Identities=38%  Similarity=0.727  Sum_probs=78.2

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++++++.+...+.++.+..+....+...+..+.+.+||++|++.+..+++.+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999988777778777776667777788889999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (162)
T cd04123          81 DITDADS   87 (162)
T ss_pred             ECCCHHH
Confidence            9998753

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.80  E-value=1.6e-19  Score=127.32  Aligned_cols=80  Identities=20%  Similarity=0.476  Sum_probs=71.7

Q ss_pred             EEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV  168 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~  168 (173)
                      |+++|++|||||||+++|.++.+...+.||++.+.    ..++...+.+.+||++|++++..+++.+++++|++|+|||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            79999999999999999999989888999998643    23455678999999999999999999999999999999999


Q ss_pred             CCCC
Q psy13826        169 SHVK  172 (173)
Q Consensus       169 t~~~  172 (173)
                      ++++
T Consensus        78 t~~~   81 (164)
T cd04162          78 ADSE   81 (164)
T ss_pred             CCHH
Confidence            9874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.79  E-value=2.6e-19  Score=128.37  Aligned_cols=83  Identities=24%  Similarity=0.533  Sum_probs=71.8

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||++++..+++.. +.||++.++.  .+.  ...+.+++||++|+++++.+++.+++++|++|+|
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            4899999999999999999999888865 6788886653  233  3557899999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        92 ~D~t~~~s   99 (182)
T PTZ00133         92 VDSNDRER   99 (182)
T ss_pred             EeCCCHHH
Confidence            99998753

>cd04114 Rab30 Rab30 subfamily

Probab=99.79  E-value=1.5e-18  Score=122.35  Aligned_cols=89  Identities=51%  Similarity=0.958  Sum_probs=81.0

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+|++++|++|||||||++++.++.+...+.++++.++....+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45689999999999999999999998888888889988887777888888899999999999999998899999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus        85 ~v~d~~~~~   93 (169)
T cd04114          85 LTYDITCEE   93 (169)
T ss_pred             EEEECcCHH
Confidence            999999864

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.79  E-value=4.7e-19  Score=127.06  Aligned_cols=86  Identities=24%  Similarity=0.476  Sum_probs=73.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      .+||+++|++|||||||+++++.+++... .||.+.+.....+.. ++..+.+.+|||+|++++..+++.+++++|++|+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            47999999999999999999999988754 678876665544444 4467899999999999999999999999999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |||+++++
T Consensus        82 v~D~~~~~   89 (183)
T cd04152          82 VVDSVDVE   89 (183)
T ss_pred             EEECCCHH
Confidence            99999864

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00157 Rho Rho (Ras homology) family

Probab=99.78  E-value=1.5e-18  Score=122.50  Aligned_cols=86  Identities=30%  Similarity=0.570  Sum_probs=75.9

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++|.++.+...+.++....+ ......++..+.+++||++|++.+...++.+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999999888888877554 445567888999999999999999888888999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        80 d~~~~~s   86 (171)
T cd00157          80 SVDSPSS   86 (171)
T ss_pred             ECCCHHH
Confidence            9998653

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.78  E-value=1.4e-18  Score=127.71  Aligned_cols=87  Identities=44%  Similarity=0.725  Sum_probs=80.4

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++|.++.+...+.+|++..+...........+++.+|||+|+++|+.+++.|++.++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            38999999999999999999999999999999999888777776666689999999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      ||.++++
T Consensus        85 ~d~~~~~   91 (219)
T COG1100          85 YDSTLRE   91 (219)
T ss_pred             Eecccch
Confidence            9999854

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.78  E-value=6.5e-19  Score=124.03  Aligned_cols=85  Identities=28%  Similarity=0.509  Sum_probs=73.2

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc-ccchhhhhcCCCEEEEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-RAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-~~~~~~~~~~~~~~ilv~  166 (173)
                      ||+++|++|||||||+++++++.+..++.++.+..+ ...+.++++.+.+++||++|++++ ......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999999999888888876554 455678889999999999999863 455678899999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        80 d~~~~~s   86 (165)
T cd04146          80 SITDRSS   86 (165)
T ss_pred             ECCCHHH
Confidence            9999754

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd00154 Rab Rab family

Probab=99.78  E-value=1.6e-18  Score=120.23  Aligned_cols=86  Identities=55%  Similarity=0.991  Sum_probs=80.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|+++||||||++++.++.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999999888899999888888888888899999999999999999999999999999999


Q ss_pred             eCCCCC
Q psy13826        167 DVSHVK  172 (173)
Q Consensus       167 d~t~~~  172 (173)
                      |+++++
T Consensus        81 d~~~~~   86 (159)
T cd00154          81 DITNRE   86 (159)
T ss_pred             ECCCHH
Confidence            999864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.78  E-value=6.6e-18  Score=135.75  Aligned_cols=85  Identities=29%  Similarity=0.279  Sum_probs=59.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch----------
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT----------  152 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~----------  152 (173)
                      ..+|++++|.+|||||||++++++.+.  ......|..... ...+..++.  .+.+|||+|..++....          
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~-~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSI-DIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcE-eEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            458999999999999999999998763  233333332222 233344444  67899999976543221          


Q ss_pred             -hhhhcCCCEEEEEEeCCCCC
Q psy13826        153 -RSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       153 -~~~~~~~~~~ilv~d~t~~~  172 (173)
                       ..+++.+|++|+|+|+++..
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~  268 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGI  268 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCc
Confidence             23678999999999998764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04148 RGK RGK subfamily

Probab=99.78  E-value=1.3e-18  Score=128.40  Aligned_cols=85  Identities=25%  Similarity=0.324  Sum_probs=73.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc-CCCEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR-GAAGALM  164 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~-~~~~~il  164 (173)
                      +||+++|++|||||||+++|..+++. ..+.++.+.++....+.+++..+.+.+||++|++  ..+...+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999998887 7788887756667778888899999999999998  334556777 9999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||++|++|
T Consensus        79 V~d~td~~S   87 (221)
T cd04148          79 VYSVTDRSS   87 (221)
T ss_pred             EEECCCHHH
Confidence            999999764

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0395|consensus

Probab=99.77  E-value=8.5e-19  Score=126.73  Aligned_cols=88  Identities=36%  Similarity=0.563  Sum_probs=82.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+|++++|.+|||||+|+.+|..+.|..+|.||++..+ .+.+.+++..+.+.|+||+|++.|..+...+++.++++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            358999999999999999999999999999999999655 7788899999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      ||+++|++|
T Consensus        81 Vysitd~~S   89 (196)
T KOG0395|consen   81 VYSITDRSS   89 (196)
T ss_pred             EEECCCHHH
Confidence            999999876

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.77  E-value=2e-18  Score=125.24  Aligned_cols=84  Identities=26%  Similarity=0.457  Sum_probs=75.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      ||+++|++|||||||+++|+++.+...+.+|.+. .....+.+.+..+.+++||++|+..|..+++.+++.+|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            6899999999999999999999998888888763 445567778888999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy13826        168 VSHVK  172 (173)
Q Consensus       168 ~t~~~  172 (173)
                      +++++
T Consensus        80 ~~~~~   84 (198)
T cd04147          80 VDDPE   84 (198)
T ss_pred             CCCHH
Confidence            99864

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.76  E-value=7.2e-18  Score=132.41  Aligned_cols=117  Identities=24%  Similarity=0.225  Sum_probs=81.0

Q ss_pred             EEEeeccCcccchhhhhhhhhccc-cCCCCCc--ceeeEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEE
Q psy13826         53 LRLVSTSQPITRKNLLWALVSKMS-SSGQYSY--SYIFKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRI  127 (173)
Q Consensus        53 ~~~~s~~~~~~~k~l~~~~~~~~~-~~~~~~~--~~~~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~  127 (173)
                      ...+|..|+....++++.....++ ....+..  ...+|++++|.||||||||+|++++++-.  .....|..+.+ ...
T Consensus       142 ~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I-~~~  220 (444)
T COG1160         142 PVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSI-DIE  220 (444)
T ss_pred             ceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccce-eee
Confidence            666788889999999999988874 1111222  25799999999999999999999988732  33333444333 334


Q ss_pred             EEECCeEEEEEEEeCCCccc----------cccch-hhhhcCCCEEEEEEeCCCCC
Q psy13826        128 IEVHGEKIKLQIWDTAGQER----------FRAVT-RSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       128 ~~~~~~~~~l~i~D~~g~~~----------~~~~~-~~~~~~~~~~ilv~d~t~~~  172 (173)
                      +..+++.  +.+.||+|..+          |...+ ...+..+|++++|.|.+.+-
T Consensus       221 ~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~  274 (444)
T COG1160         221 FERDGRK--YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGI  274 (444)
T ss_pred             EEECCeE--EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCc
Confidence            4555665  45779999533          33222 23577899999999998753

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.76  E-value=4.1e-18  Score=119.28  Aligned_cols=85  Identities=35%  Similarity=0.631  Sum_probs=77.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++++++++...+.++.+..+ ......++..+.+.+||++|++.+..++..+++.++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999999988888887655 455677888999999999999999999999999999999999


Q ss_pred             eCCCCC
Q psy13826        167 DVSHVK  172 (173)
Q Consensus       167 d~t~~~  172 (173)
                      |+++++
T Consensus        80 d~~~~~   85 (164)
T cd04139          80 SITDME   85 (164)
T ss_pred             ECCCHH
Confidence            998865

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04158 ARD1 ARD1 subfamily

Probab=99.76  E-value=2.1e-18  Score=122.10  Aligned_cols=81  Identities=27%  Similarity=0.587  Sum_probs=69.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      ||+++|+++||||||++++.++.+.. +.||++.++.  .+  +...+.+.+||++|++++...++.+++.+|++++|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TV--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EE--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999987764 7888886663  22  3346789999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13826        168 VSHVKE  173 (173)
Q Consensus       168 ~t~~~S  173 (173)
                      +++++|
T Consensus        76 ~s~~~s   81 (169)
T cd04158          76 SSHRDR   81 (169)
T ss_pred             CCcHHH
Confidence            998753

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01893 Miro1 Miro1 subfamily

Probab=99.76  E-value=4.2e-18  Score=120.15  Aligned_cols=85  Identities=28%  Similarity=0.395  Sum_probs=70.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +|++++|++|||||||+++|.++.|...++++.. .+ .....+++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-EI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-ce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            4899999999999999999999999776554432 22 334456778899999999999988877788889999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        79 d~~~~~s   85 (166)
T cd01893          79 SVDRPST   85 (166)
T ss_pred             ECCCHHH
Confidence            9998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.75  E-value=4.1e-18  Score=120.46  Aligned_cols=81  Identities=23%  Similarity=0.424  Sum_probs=69.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      +|+++|++|||||||++++.++ +...+.||+|...  ..+..  ..+.+++||++|++.+..+++.++++++++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 7778889998653  23333  45788999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13826        168 VSHVKE  173 (173)
Q Consensus       168 ~t~~~S  173 (173)
                      ++++++
T Consensus        76 ~s~~~s   81 (167)
T cd04161          76 SSDDDR   81 (167)
T ss_pred             CCchhH
Confidence            998753

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00876 Ras Ras family

Probab=99.75  E-value=5.6e-18  Score=118.06  Aligned_cols=85  Identities=35%  Similarity=0.554  Sum_probs=75.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      ||+++|++|||||||+++++++.+...+.++.+ +.....+..++..+.+++||++|++.+..++..+++.++++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999999988888888887 4445666777788999999999999999999999999999999999


Q ss_pred             CCCCCC
Q psy13826        168 VSHVKE  173 (173)
Q Consensus       168 ~t~~~S  173 (173)
                      +++++|
T Consensus        80 ~~~~~s   85 (160)
T cd00876          80 ITDRES   85 (160)
T ss_pred             CCCHHH
Confidence            998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.75  E-value=3.2e-18  Score=114.21  Aligned_cols=86  Identities=30%  Similarity=0.577  Sum_probs=67.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      ||+++|++|||||||+++|++..+.  ..+.++.+.++.............+++||++|++.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999999876  22333344445444556677777799999999999888888889999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        81 ~D~s~~~s   88 (119)
T PF08477_consen   81 YDLSDPES   88 (119)
T ss_dssp             EECCGHHH
T ss_pred             EcCCChHH
Confidence            99998753

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.75  E-value=5e-17  Score=137.70  Aligned_cols=85  Identities=28%  Similarity=0.367  Sum_probs=60.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc----------cccch
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----------FRAVT  152 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~  152 (173)
                      ..+||+++|++|||||||++++++.+.  ..++.+|... .....+.+++..  +.+|||+|..+          |..+.
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d-~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRD-PVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcC-cceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHH
Confidence            358999999999999999999999874  3444444433 333445566655  55899999632          22222


Q ss_pred             -hhhhcCCCEEEEEEeCCCCC
Q psy13826        153 -RSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       153 -~~~~~~~~~~ilv~d~t~~~  172 (173)
                       ..+++.+|++++|+|+++..
T Consensus       526 ~~~~i~~advvilViDat~~~  546 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPI  546 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCC
Confidence             23478999999999999864

>cd04157 Arl6 Arl6 subfamily

Probab=99.75  E-value=3e-18  Score=119.95  Aligned_cols=81  Identities=21%  Similarity=0.430  Sum_probs=68.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC-CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK-FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +|+++|++|||||||++++.+.. +...+.||++.....    +....+.+.+||++|++++..+++.+++.+|++|+||
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            58999999999999999999876 466778888855432    2235678999999999999999999999999999999


Q ss_pred             eCCCCC
Q psy13826        167 DVSHVK  172 (173)
Q Consensus       167 d~t~~~  172 (173)
                      |++++.
T Consensus        77 D~~~~~   82 (162)
T cd04157          77 DSSDRL   82 (162)
T ss_pred             eCCcHH
Confidence            999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG4252|consensus

Probab=99.74  E-value=6.5e-20  Score=127.14  Aligned_cols=95  Identities=37%  Similarity=0.693  Sum_probs=88.7

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG  158 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~  158 (173)
                      .....+..+|++++|..+|||+|+++|||.+-|...|..|+|.++....+.++...+.+.+||++||++|+.+...||++
T Consensus        13 ~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrg   92 (246)
T KOG4252|consen   13 DETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRG   92 (246)
T ss_pred             CchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcc
Confidence            34566778999999999999999999999999999999999999988888888888899999999999999999999999


Q ss_pred             CCEEEEEEeCCCCCC
Q psy13826        159 AAGALMVIDVSHVKE  173 (173)
Q Consensus       159 ~~~~ilv~d~t~~~S  173 (173)
                      |.+.+|||+.||+.|
T Consensus        93 aqa~vLVFSTTDr~S  107 (246)
T KOG4252|consen   93 AQASVLVFSTTDRYS  107 (246)
T ss_pred             ccceEEEEecccHHH
Confidence            999999999999875

>cd04154 Arl2 Arl2 subfamily

Probab=99.74  E-value=6.4e-18  Score=119.96  Aligned_cols=84  Identities=25%  Similarity=0.491  Sum_probs=70.1

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||++++.++.+ ..+.||++...  ..+.++  .+.+.+||++|++.+..++..+++.+|+++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            3458999999999999999999998754 45778887543  334444  477899999999999989999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus        87 ~v~d~~~~~   95 (173)
T cd04154          87 WVVDSSDRL   95 (173)
T ss_pred             EEEECCCHH
Confidence            999999874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.73  E-value=1.4e-17  Score=118.81  Aligned_cols=85  Identities=35%  Similarity=0.545  Sum_probs=75.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      .||+++|++|||||||++++.+..+...+.|+.+..+ ...+.+++..+.+++||++|++++..++..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999999888888887655 455667778889999999999999999999999999999999


Q ss_pred             eCCCCC
Q psy13826        167 DVSHVK  172 (173)
Q Consensus       167 d~t~~~  172 (173)
                      |+++.+
T Consensus        81 d~~~~~   86 (180)
T cd04137          81 SVTSRK   86 (180)
T ss_pred             ECCCHH
Confidence            999864

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.73  E-value=1.4e-17  Score=118.50  Aligned_cols=82  Identities=30%  Similarity=0.538  Sum_probs=70.4

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||++++..+++.. +.||++.++..  +..  ..+.+.+||++|++.+...++.+++.+|++++|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            4799999999999999999999988875 67788866532  333  357899999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      ||+++++
T Consensus        90 ~D~s~~~   96 (174)
T cd04153          90 IDSTDRE   96 (174)
T ss_pred             EECCCHH
Confidence            9999875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.72  E-value=2.1e-16  Score=127.36  Aligned_cols=85  Identities=28%  Similarity=0.297  Sum_probs=57.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc----------ch
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----------VT  152 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----------~~  152 (173)
                      ..++|+++|.+|||||||++++++.+.  ......+..... ...+..++.  .+.+|||+|..+...          ..
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~-~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSI-DTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEE-EEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            458999999999999999999997652  222232322222 223334443  467899999643221          11


Q ss_pred             -hhhhcCCCEEEEEEeCCCCC
Q psy13826        153 -RSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       153 -~~~~~~~~~~ilv~d~t~~~  172 (173)
                       ..+++.+|++|+|+|+++..
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~  269 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGI  269 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCC
Confidence             23678999999999998754

>cd04151 Arl1 Arl1 subfamily

Probab=99.72  E-value=1.3e-17  Score=116.69  Aligned_cols=80  Identities=25%  Similarity=0.481  Sum_probs=67.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      ||+++|+++||||+|++++..+.+.. +.||++.++.  .+  +...+.+++||++|++.+..+++.+++.++++|+|||
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TV--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EE--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998887754 5678776553  22  2345789999999999999999999999999999999


Q ss_pred             CCCCC
Q psy13826        168 VSHVK  172 (173)
Q Consensus       168 ~t~~~  172 (173)
                      ++++.
T Consensus        76 ~~~~~   80 (158)
T cd04151          76 STDRD   80 (158)
T ss_pred             CCCHH
Confidence            99863

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04129 Rho2 Rho2 subfamily

Probab=99.72  E-value=6.7e-17  Score=116.25  Aligned_cols=86  Identities=30%  Similarity=0.447  Sum_probs=75.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      .|++++|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+||++|++.+....+.+++.++++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            58999999999999999999999998888888876654 35567888899999999999999888888899999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 ~i~~~~s   87 (187)
T cd04129          81 AVDTPDS   87 (187)
T ss_pred             ECCCHHH
Confidence            9998764

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.71  E-value=3.1e-17  Score=114.70  Aligned_cols=81  Identities=26%  Similarity=0.552  Sum_probs=68.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      +|+++|++|||||||+++|.++++.. +.||.+.++.  .+.. ...+.+.+||++|++.+...+..+++.+|++|+|||
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999998864 4678775543  3333 345789999999999999999999999999999999


Q ss_pred             CCCCC
Q psy13826        168 VSHVK  172 (173)
Q Consensus       168 ~t~~~  172 (173)
                      +++++
T Consensus        77 ~~~~~   81 (160)
T cd04156          77 SSDEA   81 (160)
T ss_pred             CCcHH
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.70  E-value=4.1e-17  Score=113.89  Aligned_cols=80  Identities=28%  Similarity=0.588  Sum_probs=67.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      ||+++|++|||||||++++++.. ...+.+|.+.+...  +.++  .+.+.+||++|++.+...++.+++.++++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999988 44567788765533  3333  5689999999999999999999999999999999


Q ss_pred             CCCCC
Q psy13826        168 VSHVK  172 (173)
Q Consensus       168 ~t~~~  172 (173)
                      +++++
T Consensus        76 ~~~~~   80 (158)
T cd00878          76 SSDRE   80 (158)
T ss_pred             CCCHH
Confidence            99874

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG0073|consensus

Probab=99.70  E-value=5.1e-17  Score=111.14  Aligned_cols=85  Identities=22%  Similarity=0.418  Sum_probs=73.7

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      .+..++|+++|..|+|||+++++|.+.. .+...||.|.+..+.    ..+.+.+++||.+||...+..|+.||..+|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl----~~~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTL----EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEE----EecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            3458999999999999999999998765 677889999666543    33677899999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      |+|+|.+|+.
T Consensus        88 IwvvDssD~~   97 (185)
T KOG0073|consen   88 IWVVDSSDRM   97 (185)
T ss_pred             EEEEECchHH
Confidence            9999998864

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.69  E-value=8.7e-17  Score=111.53  Aligned_cols=81  Identities=26%  Similarity=0.535  Sum_probs=70.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      .|+++|++|||||||++++.+.++..++.||.+.++..  +..+  .+.+.+||++|++.+..++..+++.+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            37899999999999999999999999999999876643  2333  3789999999999999999999999999999999


Q ss_pred             CCCCC
Q psy13826        168 VSHVK  172 (173)
Q Consensus       168 ~t~~~  172 (173)
                      +++++
T Consensus        77 ~~~~~   81 (159)
T cd04159          77 AADRT   81 (159)
T ss_pred             CCCHH
Confidence            98754

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.69  E-value=8e-17  Score=115.61  Aligned_cols=84  Identities=19%  Similarity=0.346  Sum_probs=68.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||++++.++.+. .+.||.+....  .+.+  ..+++.+||++|++.+..++..+++++++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSE--ELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            34589999999999999999999988764 35666665432  2233  3467899999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|+|+++++
T Consensus        90 ~vvD~~~~~   98 (184)
T smart00178       90 YLVDAYDKE   98 (184)
T ss_pred             EEEECCcHH
Confidence            999999874

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.68  E-value=9.6e-17  Score=114.36  Aligned_cols=84  Identities=33%  Similarity=0.573  Sum_probs=71.4

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|..|+||||+++++..+++. .+.||.|.+..  .+..+  .+.+.+||.+|++.++.+|+.|+++++++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~--~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIE--EIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEE--EEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccc--eeeeC--cEEEEEEeccccccccccceeeccccceeE
Confidence            56799999999999999999999987654 37788886654  33443  457899999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|+|.+|++
T Consensus        87 fVvDssd~~   95 (175)
T PF00025_consen   87 FVVDSSDPE   95 (175)
T ss_dssp             EEEETTGGG
T ss_pred             EEEecccce
Confidence            999999865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.68  E-value=1.6e-16  Score=111.75  Aligned_cols=81  Identities=31%  Similarity=0.524  Sum_probs=65.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC------CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK------FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      +|+++|++|||||||++++.+..      ....+.+|++.++..  +.++  ...+.+||++|++.+..++..+++.+++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            58999999999999999998642      234556777766533  3343  5688999999999999999999999999


Q ss_pred             EEEEEeCCCCC
Q psy13826        162 ALMVIDVSHVK  172 (173)
Q Consensus       162 ~ilv~d~t~~~  172 (173)
                      +++|||.++++
T Consensus        77 ~v~vvd~~~~~   87 (167)
T cd04160          77 IIYVIDSTDRE   87 (167)
T ss_pred             EEEEEECchHH
Confidence            99999998864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG0070|consensus

Probab=99.68  E-value=5.5e-17  Score=113.27  Aligned_cols=84  Identities=24%  Similarity=0.496  Sum_probs=74.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ....+|+++|..++||||+++++..+++... .||+|.++....  +  +.+.+++||.+||++++.+|+.|+++.+++|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~--y--kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVE--Y--KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEE--E--cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            4568999999999999999999999998765 899997765433  3  4788999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|.|.+|++
T Consensus        90 fVvDS~Dr~   98 (181)
T KOG0070|consen   90 FVVDSSDRE   98 (181)
T ss_pred             EEEeCCcHH
Confidence            999999986

>cd00879 Sar1 Sar1 subfamily

Probab=99.66  E-value=3.6e-16  Score=112.45  Aligned_cols=83  Identities=20%  Similarity=0.397  Sum_probs=69.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||++++.++++. .+.||.+...  ..+.+++  +.+.+||++|++.+..++..+++.++++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999988874 5777776543  3344443  678899999999998888999999999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |||+++++
T Consensus        93 V~D~~~~~  100 (190)
T cd00879          93 LVDAADPE  100 (190)
T ss_pred             EEECCcHH
Confidence            99999864

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01890 LepA LepA subfamily

Probab=99.66  E-value=4.9e-16  Score=110.59  Aligned_cols=85  Identities=21%  Similarity=0.374  Sum_probs=65.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC-------CCCCCCC------ceeeeeEEEEEEE-----CCeEEEEEEEeCCCccccc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPH------TIGVEFGTRIIEV-----HGEKIKLQIWDTAGQERFR  149 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~-------~~~~~~~------t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~~~~  149 (173)
                      +|+++|+++||||||+++|++..       +...+.+      +.|.++....+.+     +++.+.+.+|||+|+++|.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999999742       2222323      2244444333333     6678899999999999999


Q ss_pred             cchhhhhcCCCEEEEEEeCCCCC
Q psy13826        150 AVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       150 ~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      ..+..+++.+|++|+|||+++..
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~  104 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGV  104 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCc
Confidence            88899999999999999998753

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.65  E-value=3.5e-16  Score=113.14  Aligned_cols=84  Identities=21%  Similarity=0.315  Sum_probs=69.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh--CCCCCCC------------CCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE--QKFMPDC------------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT  152 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~  152 (173)
                      -+|+++|+++||||||+++|+.  +.|...+            .++.|.++......++.+.+.+.+|||+|+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4799999999999999999997  5555443            2345555555555666677889999999999999999


Q ss_pred             hhhhcCCCEEEEEEeCCC
Q psy13826        153 RSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       153 ~~~~~~~~~~ilv~d~t~  170 (173)
                      ..+++.+|++++|||+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~  100 (194)
T cd01891          83 ERVLSMVDGVLLLVDASE  100 (194)
T ss_pred             HHHHHhcCEEEEEEECCC
Confidence            999999999999999987

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04171 SelB SelB subfamily

Probab=99.64  E-value=1.1e-15  Score=106.93  Aligned_cols=82  Identities=18%  Similarity=0.281  Sum_probs=60.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC---CCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ---KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      .|+++|++|||||||++++.+.   .+..++.++...+.....+.+.+ ...+.+|||+|+++|......+++.+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            5899999999999999999963   34333333333333333344432 3578999999999987666678899999999


Q ss_pred             EEeCCC
Q psy13826        165 VIDVSH  170 (173)
Q Consensus       165 v~d~t~  170 (173)
                      |||+++
T Consensus        81 V~d~~~   86 (164)
T cd04171          81 VVAADE   86 (164)
T ss_pred             EEECCC
Confidence            999986

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.64  E-value=2.2e-15  Score=103.98  Aligned_cols=86  Identities=37%  Similarity=0.620  Sum_probs=76.8

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|.+|+|||||++++....++..+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999998888888888888776677777778999999999999999999999999999999


Q ss_pred             EeCCCC
Q psy13826        166 IDVSHV  171 (173)
Q Consensus       166 ~d~t~~  171 (173)
                      +|+...
T Consensus        81 ~d~~~~   86 (161)
T TIGR00231        81 FDIVIL   86 (161)
T ss_pred             EEEeee
Confidence            998754

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.61  E-value=1.1e-15  Score=104.91  Aligned_cols=71  Identities=21%  Similarity=0.311  Sum_probs=54.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc-----ccccchhhhhcCCCEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-----RFRAVTRSYYRGAAGA  162 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~-----~~~~~~~~~~~~~~~~  162 (173)
                      ||+++|++|||||||+++|.+..+  .+.+|.+.++.       .     .+|||+|+.     .+..+.+ .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            899999999999999999998865  34555543331       1     589999972     3444433 47899999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      |+|||+++++|
T Consensus        67 ilv~d~~~~~s   77 (142)
T TIGR02528        67 ALVQSATDPES   77 (142)
T ss_pred             EEEecCCCCCc
Confidence            99999999875

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG1673|consensus

Probab=99.61  E-value=8.4e-16  Score=104.45  Aligned_cols=91  Identities=23%  Similarity=0.504  Sum_probs=85.6

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      ...-.+||-++||+.+|||||+-.|.++++.+++..+.|.++..+.+.+.+..+.+.|||.+|++++..+.+....++-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            44567999999999999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCC
Q psy13826        162 ALMVIDVSHVK  172 (173)
Q Consensus       162 ~ilv~d~t~~~  172 (173)
                      ++++||+|.++
T Consensus        96 IlFmFDLt~r~  106 (205)
T KOG1673|consen   96 ILFMFDLTRRS  106 (205)
T ss_pred             EEEEEecCchH
Confidence            99999999874

>cd04155 Arl3 Arl3 subfamily

Probab=99.60  E-value=4.2e-15  Score=105.20  Aligned_cols=83  Identities=27%  Similarity=0.479  Sum_probs=68.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+|++++|++|||||||++++.+..+. .+.+|.|.+..  .+..++  ..+.+||++|+..+...+..+++.++++++
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            3689999999999999999999987664 45677775443  333443  578899999999888888899999999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |||+++++
T Consensus        88 v~D~~~~~   95 (173)
T cd04155          88 VIDSADKK   95 (173)
T ss_pred             EEeCCCHH
Confidence            99998753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.58  E-value=1.1e-14  Score=102.46  Aligned_cols=84  Identities=17%  Similarity=0.198  Sum_probs=65.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      .|+++|++|||||||++++...++...+.++...+.....+..+ .....+.+|||+|++.|..++..+++.+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999988776544433333322333332 13567899999999999888888999999999999


Q ss_pred             eCCCC
Q psy13826        167 DVSHV  171 (173)
Q Consensus       167 d~t~~  171 (173)
                      |+++.
T Consensus        82 d~~~~   86 (168)
T cd01887          82 AADDG   86 (168)
T ss_pred             ECCCC
Confidence            99874

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0075|consensus

Probab=99.58  E-value=1.2e-15  Score=102.77  Aligned_cols=85  Identities=24%  Similarity=0.515  Sum_probs=76.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ....+.++|..++|||||++..+.+++.+..-||.|.+.    .++....+.+.+||.+||++|+.+|+.|++.++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            457899999999999999999999999999999999654    3466778889999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |+|..+++.
T Consensus        95 ~VDaad~~k  103 (186)
T KOG0075|consen   95 VVDAADPDK  103 (186)
T ss_pred             EeecCCccc
Confidence            999999863

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.58  E-value=9.8e-15  Score=106.39  Aligned_cols=83  Identities=19%  Similarity=0.383  Sum_probs=65.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC-CEEEEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA-AGALMVI  166 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~-~~~ilv~  166 (173)
                      +|+++|+++||||+|+++|..+++...+.++ ..+.........++...+.+||+||+++++..+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999887766544 2233222222224457799999999999988888899999 9999999


Q ss_pred             eCCCC
Q psy13826        167 DVSHV  171 (173)
Q Consensus       167 d~t~~  171 (173)
                      |.++.
T Consensus        81 D~~~~   85 (203)
T cd04105          81 DSATF   85 (203)
T ss_pred             ECccc
Confidence            99886

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0096|consensus

Probab=99.58  E-value=7.5e-15  Score=102.86  Aligned_cols=88  Identities=30%  Similarity=0.608  Sum_probs=81.2

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+|++++|+.|.|||+++++++.++|...+.+|+|.+.+.....-+...+++..|||+|+|.+..+...||-.+.|.+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            46799999999999999999999999999999999999998777666666799999999999999999999999999999


Q ss_pred             EEEeCCCC
Q psy13826        164 MVIDVSHV  171 (173)
Q Consensus       164 lv~d~t~~  171 (173)
                      ++||++.+
T Consensus        88 imFdVtsr   95 (216)
T KOG0096|consen   88 IMFDVTSR   95 (216)
T ss_pred             EEeeeeeh
Confidence            99999853

>KOG0071|consensus

Probab=99.55  E-value=2.8e-14  Score=95.47  Aligned_cols=82  Identities=24%  Similarity=0.509  Sum_probs=71.5

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .++|+++|..++||||++..++-+.. ....||+|.++.+..    .+.+.+.+||.+|+++.+.+|++||....++|||
T Consensus        17 E~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   17 EMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             cceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            68999999999999999999998764 456789997765533    3677899999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      .|..+++
T Consensus        92 ~Dsa~~d   98 (180)
T KOG0071|consen   92 VDSADRD   98 (180)
T ss_pred             Eeccchh
Confidence            9998764

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.51  E-value=1.1e-13  Score=98.86  Aligned_cols=89  Identities=22%  Similarity=0.347  Sum_probs=64.2

Q ss_pred             CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc----------cccc
Q psy13826         80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ERFR  149 (173)
Q Consensus        80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----------~~~~  149 (173)
                      +.+.+..++|+++|++|+|||||++++++..+...+.++.+.+.....+..++   .+.+|||+|.          +.+.
T Consensus        12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~   88 (179)
T TIGR03598        12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ   88 (179)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence            34456788999999999999999999999876665666666544443333332   5889999994          2334


Q ss_pred             cchhhhhcC---CCEEEEEEeCCCC
Q psy13826        150 AVTRSYYRG---AAGALMVIDVSHV  171 (173)
Q Consensus       150 ~~~~~~~~~---~~~~ilv~d~t~~  171 (173)
                      .+...|++.   ++++++|+|.+++
T Consensus        89 ~~~~~~l~~~~~~~~ii~vvd~~~~  113 (179)
T TIGR03598        89 KLIEEYLEKRENLKGVVLLMDIRHP  113 (179)
T ss_pred             HHHHHHHHhChhhcEEEEEecCCCC
Confidence            444556654   5799999999874

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG0074|consensus

Probab=99.49  E-value=1.8e-13  Score=91.74  Aligned_cols=84  Identities=24%  Similarity=0.443  Sum_probs=71.0

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+|+.++|-.++|||+|++++.... +....||.|.+.  +.+..+ ..+.|.+||.+||...+.+|..||.+.|++|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn~--k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFNT--KKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcce--EEEeec-CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence            668999999999999999999998765 445667888544  444444 3578999999999999999999999999999


Q ss_pred             EEEeCCCC
Q psy13826        164 MVIDVSHV  171 (173)
Q Consensus       164 lv~d~t~~  171 (173)
                      +|.|.+|+
T Consensus        91 yVIDS~D~   98 (185)
T KOG0074|consen   91 YVIDSTDE   98 (185)
T ss_pred             EEEeCCch
Confidence            99998875

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.49  E-value=1.3e-13  Score=95.83  Aligned_cols=80  Identities=20%  Similarity=0.304  Sum_probs=59.8

Q ss_pred             EEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhhhc--CCCEE
Q psy13826         91 IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRSYYR--GAAGA  162 (173)
Q Consensus        91 l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------~~~~~~~--~~~~~  162 (173)
                      ++|++|||||||++++++..+.....+....+.....+.+++  ..+.+|||||+..+..      ++..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            579999999999999998865444444444444445556655  4688999999987664      3566665  89999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      ++|+|.++++
T Consensus        79 i~v~d~~~~~   88 (158)
T cd01879          79 VNVVDATNLE   88 (158)
T ss_pred             EEEeeCCcch
Confidence            9999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.49  E-value=1.8e-13  Score=98.70  Aligned_cols=90  Identities=27%  Similarity=0.357  Sum_probs=65.4

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc----------ccc
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ERF  148 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----------~~~  148 (173)
                      ++...+..++|+++|++|||||||++++++.++...+.++.+.+........   ...+.+|||+|.          +.+
T Consensus        17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~   93 (196)
T PRK00454         17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKW   93 (196)
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHH
Confidence            3445557889999999999999999999998776677777765544333332   357899999994          344


Q ss_pred             ccchhhhhcCC---CEEEEEEeCCCC
Q psy13826        149 RAVTRSYYRGA---AGALMVIDVSHV  171 (173)
Q Consensus       149 ~~~~~~~~~~~---~~~ilv~d~t~~  171 (173)
                      ..+...+++.+   +++++|+|.+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~v~d~~~~  119 (196)
T PRK00454         94 QKLIEEYLRTRENLKGVVLLIDSRHP  119 (196)
T ss_pred             HHHHHHHHHhCccceEEEEEEecCCC
Confidence            44555666654   578888998764

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.49  E-value=3.3e-13  Score=108.68  Aligned_cols=90  Identities=26%  Similarity=0.294  Sum_probs=66.2

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCC--CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc-------
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-------  151 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~-------  151 (173)
                      ......+||+++|++|||||||++++++..  +...++.|. .++....+.+++.  .+.+|||+|+..+...       
T Consensus       198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtT-rd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~  274 (442)
T TIGR00450       198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTT-RDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIE  274 (442)
T ss_pred             HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcE-EEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHH
Confidence            344567899999999999999999999875  344454443 3444555566654  4689999998654422       


Q ss_pred             -hhhhhcCCCEEEEEEeCCCCCC
Q psy13826        152 -TRSYYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       152 -~~~~~~~~~~~ilv~d~t~~~S  173 (173)
                       ...+++.+|++++|||++++.+
T Consensus       275 ~~~~~~~~aD~il~V~D~s~~~s  297 (442)
T TIGR00450       275 KSFKAIKQADLVIYVLDASQPLT  297 (442)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCC
Confidence             2357899999999999998764

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01878 HflX HflX subfamily

Probab=99.48  E-value=1.6e-13  Score=99.79  Aligned_cols=85  Identities=26%  Similarity=0.252  Sum_probs=58.3

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccc---------cccch
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER---------FRAVT  152 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~---------~~~~~  152 (173)
                      ...++|+++|++|||||||++++++.++...  +.+|..  .....+.+++. ..+.+|||+|...         +...+
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~  115 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL  115 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH
Confidence            4568999999999999999999999874332  223332  22333344332 3688999999732         11111


Q ss_pred             hhhhcCCCEEEEEEeCCCCC
Q psy13826        153 RSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       153 ~~~~~~~~~~ilv~d~t~~~  172 (173)
                       ..+..+|++++|+|+++++
T Consensus       116 -~~~~~~d~ii~v~D~~~~~  134 (204)
T cd01878         116 -EEVAEADLLLHVVDASDPD  134 (204)
T ss_pred             -HHHhcCCeEEEEEECCCCC
Confidence             2367899999999999875

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.48  E-value=1.3e-13  Score=94.00  Aligned_cols=81  Identities=51%  Similarity=0.916  Sum_probs=68.4

Q ss_pred             EEeCCCCChHHHHHHHHhCCC-CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCC
Q psy13826         91 IIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS  169 (173)
Q Consensus        91 l~G~~~vGKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t  169 (173)
                      ++|++|+|||||++++++... .....++. .+..............+.+||++|+..+......+++.++++++|||++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            579999999999999999877 55566666 6666666666677889999999999988877788999999999999999


Q ss_pred             CCC
Q psy13826        170 HVK  172 (173)
Q Consensus       170 ~~~  172 (173)
                      ++.
T Consensus        80 ~~~   82 (157)
T cd00882          80 DRE   82 (157)
T ss_pred             CHH
Confidence            864

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK04213 GTP-binding protein; Provisional

Probab=99.47  E-value=1.2e-13  Score=100.20  Aligned_cols=80  Identities=20%  Similarity=0.258  Sum_probs=58.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccchh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG-----------QERFRAVTR  153 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g-----------~~~~~~~~~  153 (173)
                      ..++|+++|++|||||||++++.+..+...+.|+.  ++....+...    .+.+|||+|           +++++..+.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            45799999999999999999999988765555543  3333333332    588999999           567777666


Q ss_pred             hhhc-C---CCEEEEEEeCCC
Q psy13826        154 SYYR-G---AAGALMVIDVSH  170 (173)
Q Consensus       154 ~~~~-~---~~~~ilv~d~t~  170 (173)
                      .+++ .   ++++++|+|.++
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~  102 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKS  102 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCcc
Confidence            6664 3   467788888754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.47  E-value=1.8e-13  Score=111.40  Aligned_cols=85  Identities=20%  Similarity=0.222  Sum_probs=60.3

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRSYY  156 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--------~~~~~~~~~  156 (173)
                      ..+|+++|++|||||||++++++..+.. ...+.+..+.....+..++.  .+.+|||+|.+.        +......++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            4799999999999999999999876421 22233322333333444444  578999999763        233455678


Q ss_pred             cCCCEEEEEEeCCCCC
Q psy13826        157 RGAAGALMVIDVSHVK  172 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~~  172 (173)
                      +.||++|+|||+++..
T Consensus       116 ~~aD~il~VvD~~~~~  131 (472)
T PRK03003        116 RTADAVLFVVDATVGA  131 (472)
T ss_pred             HhCCEEEEEEECCCCC
Confidence            9999999999999864

>cd01898 Obg Obg subfamily

Probab=99.46  E-value=2.5e-13  Score=95.67  Aligned_cols=81  Identities=23%  Similarity=0.251  Sum_probs=53.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCC-CCC-CceeeeeEEEEEEECCeEEEEEEEeCCCcc----ccccchhhhhc---C
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMP-DCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----RFRAVTRSYYR---G  158 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----~~~~~~~~~~~---~  158 (173)
                      .|+++|++|||||||++++.+.+... .+. +|....  ...+.+++ ...+.+|||||+.    ....+...+++   .
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~--~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   78 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPN--LGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER   78 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCc--ceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence            58999999999999999999765321 111 121111  11222333 2478999999963    22234444444   5


Q ss_pred             CCEEEEEEeCCCC
Q psy13826        159 AAGALMVIDVSHV  171 (173)
Q Consensus       159 ~~~~ilv~d~t~~  171 (173)
                      +|++++|+|++++
T Consensus        79 ~d~vi~v~D~~~~   91 (170)
T cd01898          79 TRLLLHVIDLSGD   91 (170)
T ss_pred             CCEEEEEEecCCC
Confidence            9999999999987

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PTZ00099 rab6; Provisional

Probab=99.45  E-value=2.5e-13  Score=96.85  Aligned_cols=65  Identities=37%  Similarity=0.709  Sum_probs=60.1

Q ss_pred             CCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCCC
Q psy13826        109 QKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       109 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~S  173 (173)
                      +.|.+++.||+|.++....+.+++..+.+.||||+|++++..+++.++++||++|+|||+++++|
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~s   67 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS   67 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHH
Confidence            46888899999999988888899999999999999999999999999999999999999999764

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.44  E-value=3.5e-13  Score=105.64  Aligned_cols=84  Identities=25%  Similarity=0.245  Sum_probs=59.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCC--CCceeeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC--PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE---------RFRAVTR  153 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~---------~~~~~~~  153 (173)
                      ..++|+++|.+|||||||++++++.++....  .+|.  +.....+.+.+. ..+.+|||+|..         .|...+ 
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-  263 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-  263 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-
Confidence            4589999999999999999999998753222  2233  233445555332 368899999972         222222 


Q ss_pred             hhhcCCCEEEEEEeCCCCC
Q psy13826        154 SYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       154 ~~~~~~~~~ilv~d~t~~~  172 (173)
                      ..+++||++++|||++++.
T Consensus       264 e~~~~ADlil~VvD~s~~~  282 (351)
T TIGR03156       264 EEVREADLLLHVVDASDPD  282 (351)
T ss_pred             HHHHhCCEEEEEEECCCCc
Confidence            2478999999999999875

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.44  E-value=5.5e-13  Score=95.26  Aligned_cols=85  Identities=19%  Similarity=0.231  Sum_probs=62.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCce--------------eeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI--------------GVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTR  153 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~  153 (173)
                      +|+++|++|+|||||++++++........++.              +.+.......+......+.+||++|+..+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            48999999999999999999887665432211              1111111222333356789999999998888888


Q ss_pred             hhhcCCCEEEEEEeCCCCC
Q psy13826        154 SYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       154 ~~~~~~~~~ilv~d~t~~~  172 (173)
                      .+++.+|++++|+|.++..
T Consensus        81 ~~~~~~d~~i~v~d~~~~~   99 (189)
T cd00881          81 RGLSVSDGAILVVDANEGV   99 (189)
T ss_pred             HHHHhcCEEEEEEECCCCC
Confidence            8999999999999998753

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.43  E-value=1.1e-12  Score=92.35  Aligned_cols=81  Identities=22%  Similarity=0.165  Sum_probs=52.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCC--ceeeeeEEEEEEECCeEEEEEEEeCCCcccccc---------chhhhh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPH--TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA---------VTRSYY  156 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~---------~~~~~~  156 (173)
                      +|+++|++|||||||++++.+..+.....+  |.....  .  ......+.+.+|||+|+.....         ......
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~--~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   77 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFV--G--HFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALA   77 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeE--E--EEccCceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence            799999999999999999999876432211  222211  1  1223457899999999842110         011112


Q ss_pred             cCCCEEEEEEeCCCCC
Q psy13826        157 RGAAGALMVIDVSHVK  172 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~~  172 (173)
                      ..+|++|+|+|+++++
T Consensus        78 ~~~d~~l~v~d~~~~~   93 (168)
T cd01897          78 HLRAAVLFLFDPSETC   93 (168)
T ss_pred             hccCcEEEEEeCCccc
Confidence            3368999999999864

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.43  E-value=7.6e-13  Score=110.05  Aligned_cols=86  Identities=23%  Similarity=0.380  Sum_probs=67.4

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCC-------CCCCCCC------ceeeeeEEEEEEE-----CCeEEEEEEEeCCCccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPH------TIGVEFGTRIIEV-----HGEKIKLQIWDTAGQER  147 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~-------~~~~~~~------t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~~  147 (173)
                      .-+++++|+.++|||||+++|+...       +...+..      +.|.++....+.+     ++..+.+.+|||||+++
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4589999999999999999998752       2222222      2366555444433     46678999999999999


Q ss_pred             cccchhhhhcCCCEEEEEEeCCCC
Q psy13826        148 FRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       148 ~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      |...+..+++.+|++|+|||+++.
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g  106 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQG  106 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCC
Confidence            998889999999999999999874

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.42  E-value=1.3e-12  Score=90.53  Aligned_cols=84  Identities=27%  Similarity=0.331  Sum_probs=58.4

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhhhh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV--------TRSYY  156 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--------~~~~~  156 (173)
                      ++|+++|++|+|||||++++.+....  .... ....+.....+..+  ...+.+|||+|...+...        ...++
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~   78 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIA-GTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAI   78 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCC-CCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence            58999999999999999999987642  2222 22222323333333  356789999997655321        23467


Q ss_pred             cCCCEEEEEEeCCCCCC
Q psy13826        157 RGAAGALMVIDVSHVKE  173 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~~S  173 (173)
                      ..+|++++|+|++++++
T Consensus        79 ~~~~~~v~v~d~~~~~~   95 (157)
T cd04164          79 EEADLVLFVIDASRGLD   95 (157)
T ss_pred             hhCCEEEEEEECCCCCC
Confidence            79999999999998653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK15494 era GTPase Era; Provisional

Probab=99.41  E-value=8.8e-13  Score=103.08  Aligned_cols=84  Identities=24%  Similarity=0.290  Sum_probs=57.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceee--eeEEEEEEECCeEEEEEEEeCCCcc-ccccchh-------
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGV--EFGTRIIEVHGEKIKLQIWDTAGQE-RFRAVTR-------  153 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~D~~g~~-~~~~~~~-------  153 (173)
                      +..++|+++|++|||||||+++|++..+.. ..+..+.  +.....+..++  .++.+|||||+. .+..+..       
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            456899999999999999999999887642 1222221  12233344444  357899999984 3333322       


Q ss_pred             hhhcCCCEEEEEEeCCC
Q psy13826        154 SYYRGAAGALMVIDVSH  170 (173)
Q Consensus       154 ~~~~~~~~~ilv~d~t~  170 (173)
                      ..++++|++++|+|.++
T Consensus       127 ~~l~~aDvil~VvD~~~  143 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK  143 (339)
T ss_pred             HHhhhCCEEEEEEECCC
Confidence            24679999999999765

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.41  E-value=1.7e-12  Score=107.64  Aligned_cols=86  Identities=20%  Similarity=0.249  Sum_probs=68.5

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ....+|+++|+.++|||||++++.+.++.....+.+..+.....+..++.. .+.+|||||++.|..++...+..+|++|
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            355789999999999999999999988776555444444434444443332 6889999999999999988999999999


Q ss_pred             EEEeCCC
Q psy13826        164 MVIDVSH  170 (173)
Q Consensus       164 lv~d~t~  170 (173)
                      +|||+++
T Consensus       164 LVVda~d  170 (587)
T TIGR00487       164 LVVAADD  170 (587)
T ss_pred             EEEECCC
Confidence            9999886

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04167 Snu114p Snu114p subfamily

Probab=99.40  E-value=1e-12  Score=96.40  Aligned_cols=85  Identities=25%  Similarity=0.340  Sum_probs=62.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCC-----------------CCceeeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDC-----------------PHTIGVEFGTRIIEV-----HGEKIKLQIWDTAGQ  145 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~-----------------~~t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~  145 (173)
                      +|+++|..++|||||+.+++........                 ....+.++....+.+     +++.+.+.+|||+|+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999976543210                 111223322222222     356789999999999


Q ss_pred             cccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        146 ERFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       146 ~~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      ++|......+++.+|++|+|+|+++..
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~  108 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGV  108 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCC
Confidence            999877888899999999999998653

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG3883|consensus

Probab=99.40  E-value=9.6e-13  Score=89.44  Aligned_cols=89  Identities=21%  Similarity=0.325  Sum_probs=72.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc-ccchhhhhcCCCE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-RAVTRSYYRGAAG  161 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-~~~~~~~~~~~~~  161 (173)
                      ...|++++|..+||||+++.+++.++-.  .++.||+++.|....-.-.+.+-.+.++||+|...+ ..+-++|+.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            4579999999999999999999977643  457788887665444333455667999999998877 4677889999999


Q ss_pred             EEEEEeCCCCCC
Q psy13826        162 ALMVIDVSHVKE  173 (173)
Q Consensus       162 ~ilv~d~t~~~S  173 (173)
                      ++||||..|++|
T Consensus        88 fVLVYs~~d~eS   99 (198)
T KOG3883|consen   88 FVLVYSPMDPES   99 (198)
T ss_pred             EEEEecCCCHHH
Confidence            999999999886

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.40  E-value=2e-12  Score=104.48  Aligned_cols=86  Identities=29%  Similarity=0.325  Sum_probs=62.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV--------TRS  154 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--------~~~  154 (173)
                      ..+||+++|.+|||||||++++++.+.  ......|. .++....+.+++  ..+.+|||+|.+.+...        ...
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT-~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~  290 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTT-RDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSRE  290 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc-cccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence            458999999999999999999998763  33333333 233344455555  45789999998755432        224


Q ss_pred             hhcCCCEEEEEEeCCCCCC
Q psy13826        155 YYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       155 ~~~~~~~~ilv~d~t~~~S  173 (173)
                      +++.+|++++|||++++.+
T Consensus       291 ~~~~aD~il~VvD~s~~~s  309 (449)
T PRK05291        291 AIEEADLVLLVLDASEPLT  309 (449)
T ss_pred             HHHhCCEEEEEecCCCCCC
Confidence            6889999999999998753

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.38  E-value=2.7e-12  Score=103.58  Aligned_cols=82  Identities=26%  Similarity=0.244  Sum_probs=59.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRSYY  156 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--------~~~~~~~~~  156 (173)
                      ++|+++|.+|||||||++++++...  ...+.. ...+.....+.+++  ..+.+|||+|++.        +......++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~-~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~   78 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPG-VTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAI   78 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCC-CcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            5899999999999999999998763  233332 22223333444554  6789999999876        222334578


Q ss_pred             cCCCEEEEEEeCCCC
Q psy13826        157 RGAAGALMVIDVSHV  171 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~  171 (173)
                      +.+|++|+|+|.++.
T Consensus        79 ~~ad~il~vvd~~~~   93 (435)
T PRK00093         79 EEADVILFVVDGRAG   93 (435)
T ss_pred             HhCCEEEEEEECCCC
Confidence            899999999999874

>KOG4423|consensus

Probab=99.38  E-value=1.5e-15  Score=106.06  Aligned_cols=89  Identities=40%  Similarity=0.789  Sum_probs=80.4

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      ....+|++++|+.+||||++++++....|...|..|+|.++..+....+. ..+.+++||.+||++|..+..-||+.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            56789999999999999999999999999999999999998776665544 45789999999999999999999999999


Q ss_pred             EEEEEeCCCC
Q psy13826        162 ALMVIDVSHV  171 (173)
Q Consensus       162 ~ilv~d~t~~  171 (173)
                      ..+|||+|+.
T Consensus       102 ~~iVfdvt~s  111 (229)
T KOG4423|consen  102 AFIVFDVTRS  111 (229)
T ss_pred             eEEEEEcccc
Confidence            9999999975

>cd01889 SelB_euk SelB subfamily

Probab=99.37  E-value=1.4e-12  Score=94.07  Aligned_cols=85  Identities=16%  Similarity=0.244  Sum_probs=55.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC----CCCCCC-----CCceeeeeEEEEEE----------ECCeEEEEEEEeCCCccc
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ----KFMPDC-----PHTIGVEFGTRIIE----------VHGEKIKLQIWDTAGQER  147 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~----~~~~~~-----~~t~~~~~~~~~~~----------~~~~~~~l~i~D~~g~~~  147 (173)
                      ++|+++|++++|||||+++|+..    .+...+     ..|++..+....+.          ..+....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999973    121111     12344333332222          123367889999999875


Q ss_pred             cccchhhhhcCCCEEEEEEeCCCC
Q psy13826        148 FRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       148 ~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +..........+|++++|+|.++.
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~  104 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKG  104 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCC
Confidence            532222334668999999999863

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG0084|consensus

Probab=99.37  E-value=6.2e-13  Score=93.88  Aligned_cols=86  Identities=27%  Similarity=0.393  Sum_probs=58.2

Q ss_pred             CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhh--hhccccCCCCCcceee
Q psy13826         10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL--VSKMSSSGQYSYSYIF   87 (173)
Q Consensus        10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~--~~~~~~~~~~~~~~~~   87 (173)
                      +.++|.+||+++||+|||||||+.||..+.|.++|.+|+|..+........+...+.-+|+.  ..++.+.-+..+...-
T Consensus         4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah   83 (205)
T KOG0084|consen    4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   83 (205)
T ss_pred             cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence            46899999999999999999999999999999999999887775555444443333333322  2222222233344444


Q ss_pred             EEEEEeCC
Q psy13826         88 KYIIIGDM   95 (173)
Q Consensus        88 ki~l~G~~   95 (173)
                      -|+++=|-
T Consensus        84 Gii~vyDi   91 (205)
T KOG0084|consen   84 GIIFVYDI   91 (205)
T ss_pred             eEEEEEEc
Confidence            56666553

>PRK10218 GTP-binding protein; Provisional

Probab=99.34  E-value=7.6e-12  Score=104.03  Aligned_cols=85  Identities=18%  Similarity=0.294  Sum_probs=70.9

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHh--CCCCCCC------------CCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTE--QKFMPDC------------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV  151 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~--~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~  151 (173)
                      ..+|+++|..++|||||+.+++.  +.+....            ..+.|.++......+..+.+.+.+|||+|+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            56899999999999999999997  3343321            235677777766777777889999999999999988


Q ss_pred             hhhhhcCCCEEEEEEeCCC
Q psy13826        152 TRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       152 ~~~~~~~~~~~ilv~d~t~  170 (173)
                      +..+++.+|++|+|+|+++
T Consensus        85 v~~~l~~aDg~ILVVDa~~  103 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFD  103 (607)
T ss_pred             HHHHHHhCCEEEEEEeccc
Confidence            9999999999999999976

>cd01894 EngA1 EngA1 subfamily

Probab=99.34  E-value=6.8e-12  Score=86.93  Aligned_cols=79  Identities=25%  Similarity=0.257  Sum_probs=55.2

Q ss_pred             EEEeCCCCChHHHHHHHHhCC--CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhcCC
Q psy13826         90 IIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VTRSYYRGA  159 (173)
Q Consensus        90 ~l~G~~~vGKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~--------~~~~~~~~~  159 (173)
                      +++|++|||||||++++++..  +.....++.. +........++  ..+.+|||||...+..        ....+++.+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~-~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTR-DRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCcee-CceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            479999999999999999875  3333333322 22223333333  5788999999877543        234567899


Q ss_pred             CEEEEEEeCCCC
Q psy13826        160 AGALMVIDVSHV  171 (173)
Q Consensus       160 ~~~ilv~d~t~~  171 (173)
                      |++++|+|..+.
T Consensus        78 d~ii~v~d~~~~   89 (157)
T cd01894          78 DVILFVVDGREG   89 (157)
T ss_pred             CEEEEEEecccc
Confidence            999999999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00436 era GTP-binding protein Era

Probab=99.33  E-value=7.7e-12  Score=94.96  Aligned_cols=82  Identities=28%  Similarity=0.319  Sum_probs=55.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc-cc-------hhhhhc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AV-------TRSYYR  157 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~-------~~~~~~  157 (173)
                      +|+++|.+|||||||+|++++..+.  .....|.....  ..+...+ ..++.+|||||..... .+       ...+++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i--~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI--SGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE--EEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            6899999999999999999998753  22233433222  1222222 2468899999975321 11       234678


Q ss_pred             CCCEEEEEEeCCCCC
Q psy13826        158 GAAGALMVIDVSHVK  172 (173)
Q Consensus       158 ~~~~~ilv~d~t~~~  172 (173)
                      ++|++++|+|.++..
T Consensus        79 ~aDvvl~VvD~~~~~   93 (270)
T TIGR00436        79 GVDLILFVVDSDQWN   93 (270)
T ss_pred             hCCEEEEEEECCCCC
Confidence            999999999998764

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.32  E-value=5.5e-12  Score=106.44  Aligned_cols=89  Identities=19%  Similarity=0.191  Sum_probs=68.5

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeee--eEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVE--FGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ......|+++|..++|||||++++....+.....+.+..+  .....+..++....+.+|||||++.|..++..+++.+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            3456799999999999999999999887765433322222  22222333445678999999999999999999999999


Q ss_pred             EEEEEEeCCCC
Q psy13826        161 GALMVIDVSHV  171 (173)
Q Consensus       161 ~~ilv~d~t~~  171 (173)
                      ++|+|+|+++.
T Consensus       321 iaILVVDA~dG  331 (742)
T CHL00189        321 IAILIIAADDG  331 (742)
T ss_pred             EEEEEEECcCC
Confidence            99999998873

>KOG0076|consensus

Probab=99.32  E-value=1.6e-12  Score=90.11  Aligned_cols=84  Identities=29%  Similarity=0.463  Sum_probs=67.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCC-------CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR  157 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~  157 (173)
                      ..+.++++|..++|||+|+.+....-       -+....||+|.+..+..  ++  ...+.+||.+||+..+++|..||.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~--v~--~~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE--VC--NAPLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee--ec--cceeEEEEcCChHHHHHHHHHHHH
Confidence            35789999999999999998875431       12345578887665443  44  446789999999999999999999


Q ss_pred             CCCEEEEEEeCCCCC
Q psy13826        158 GAAGALMVIDVSHVK  172 (173)
Q Consensus       158 ~~~~~ilv~d~t~~~  172 (173)
                      .||++|+++|.+|++
T Consensus        92 ~~H~ii~viDa~~~e  106 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRE  106 (197)
T ss_pred             HhceeEEeecCCCHH
Confidence            999999999999975

>PRK11058 GTPase HflX; Provisional

Probab=99.31  E-value=7.3e-12  Score=100.44  Aligned_cols=86  Identities=23%  Similarity=0.237  Sum_probs=57.9

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc--ccchh------hhhc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF--RAVTR------SYYR  157 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--~~~~~------~~~~  157 (173)
                      ..+|+++|.+|||||||+|++.+.++.....+....+.....+.+.+. ..+.+|||+|..+.  ..++.      ..++
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            368999999999999999999987643222222222233334444432 25679999997432  22222      2368


Q ss_pred             CCCEEEEEEeCCCCC
Q psy13826        158 GAAGALMVIDVSHVK  172 (173)
Q Consensus       158 ~~~~~ilv~d~t~~~  172 (173)
                      .||++|+|+|+++++
T Consensus       276 ~ADlIL~VvDaS~~~  290 (426)
T PRK11058        276 QATLLLHVVDAADVR  290 (426)
T ss_pred             cCCEEEEEEeCCCcc
Confidence            899999999999875

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.31  E-value=1.3e-11  Score=104.95  Aligned_cols=86  Identities=21%  Similarity=0.266  Sum_probs=67.3

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ......|+++|..++|||||++++....+.....+.+..+.....+..++  ..+.||||||++.|..++...++.+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            44667899999999999999999998777654443333333333344443  5688999999999999999899999999


Q ss_pred             EEEEeCCC
Q psy13826        163 LMVIDVSH  170 (173)
Q Consensus       163 ilv~d~t~  170 (173)
                      |||||+++
T Consensus       365 ILVVdAdd  372 (787)
T PRK05306        365 VLVVAADD  372 (787)
T ss_pred             EEEEECCC
Confidence            99999987

>cd01895 EngA2 EngA2 subfamily

Probab=99.31  E-value=1.6e-11  Score=86.28  Aligned_cols=85  Identities=26%  Similarity=0.225  Sum_probs=56.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc----------cc-hh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----------AV-TR  153 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----------~~-~~  153 (173)
                      .++|+++|++|+|||||++++++..... ...+..........+..++.  .+.+||++|.....          .. ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            4789999999999999999999876321 11222211222233344444  46799999964331          11 12


Q ss_pred             hhhcCCCEEEEEEeCCCCC
Q psy13826        154 SYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       154 ~~~~~~~~~ilv~d~t~~~  172 (173)
                      ..++.+|++++|+|.+++.
T Consensus        80 ~~~~~~d~vi~v~d~~~~~   98 (174)
T cd01895          80 KAIERADVVLLVIDATEGI   98 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCc
Confidence            3567899999999998874

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04169 RF3 RF3 subfamily

Probab=99.31  E-value=1.1e-11  Score=93.87  Aligned_cols=85  Identities=21%  Similarity=0.275  Sum_probs=62.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCC-----------------CCCCC---ceeeeeEEEEEEECCeEEEEEEEeCCCcc
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFM-----------------PDCPH---TIGVEFGTRIIEVHGEKIKLQIWDTAGQE  146 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~-----------------~~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~  146 (173)
                      -+|+++|.+|+|||||+++++...-.                 .++.+   ..+.++......+..+.+.+.+|||+|+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            47999999999999999999853211                 01111   11333444455566677889999999999


Q ss_pred             ccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        147 RFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       147 ~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +|.......++.+|++|+|+|.++.
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g  107 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKG  107 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCC
Confidence            8887667788999999999999864

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.31  E-value=1.8e-11  Score=91.09  Aligned_cols=82  Identities=27%  Similarity=0.302  Sum_probs=56.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc----c---chhhhhcCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----A---VTRSYYRGA  159 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----~---~~~~~~~~~  159 (173)
                      +++++|.+|||||||++++.+.... ..+..+. .+.....+.+++  ..+++||+||.....    .   ....+++++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a   78 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA   78 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence            7899999999999999999987532 2232222 122233334443  578899999975432    1   223478999


Q ss_pred             CEEEEEEeCCCCC
Q psy13826        160 AGALMVIDVSHVK  172 (173)
Q Consensus       160 ~~~ilv~d~t~~~  172 (173)
                      |++++|+|+++++
T Consensus        79 d~il~V~D~t~~~   91 (233)
T cd01896          79 DLILMVLDATKPE   91 (233)
T ss_pred             CEEEEEecCCcch
Confidence            9999999998864

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.31  E-value=6.7e-12  Score=104.05  Aligned_cols=84  Identities=19%  Similarity=0.206  Sum_probs=61.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCC----CceeeeeEEEEEE------------ECCeEEEEEEEeCCCcccccc
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCP----HTIGVEFGTRIIE------------VHGEKIKLQIWDTAGQERFRA  150 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~----~t~~~~~~~~~~~------------~~~~~~~l~i~D~~g~~~~~~  150 (173)
                      .-|+++|++++|||||++++.+..+.....    .++|..+......            +..+...+.+|||||++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            358999999999999999999887654332    2333332111100            000112388999999999999


Q ss_pred             chhhhhcCCCEEEEEEeCCC
Q psy13826        151 VTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       151 ~~~~~~~~~~~~ilv~d~t~  170 (173)
                      ++..+++.+|++++|||+++
T Consensus        85 l~~~~~~~aD~~IlVvD~~~  104 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINE  104 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCc
Confidence            99999999999999999986

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01850 CDC_Septin CDC/Septin

Probab=99.31  E-value=2.6e-11  Score=92.26  Aligned_cols=61  Identities=30%  Similarity=0.597  Sum_probs=49.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCC----------CCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD----------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~  145 (173)
                      ..++|+++|++|+|||||++++++..+...          ..+|.+.......+..++..+.+.+|||+|-
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf   73 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF   73 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence            468999999999999999999999876543          3556666665666666788899999999993

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.31  E-value=1.1e-11  Score=103.09  Aligned_cols=82  Identities=21%  Similarity=0.350  Sum_probs=65.4

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh---CCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE---QKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      +.|+++|..++|||||+++|.+   +.+..++.+++..+.....+..++  ..+.+||+||+++|......++.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            3689999999999999999996   344455555555555444555555  67899999999999877777889999999


Q ss_pred             EEEeCCC
Q psy13826        164 MVIDVSH  170 (173)
Q Consensus       164 lv~d~t~  170 (173)
                      +|+|+++
T Consensus        79 LVVDa~~   85 (581)
T TIGR00475        79 LVVDADE   85 (581)
T ss_pred             EEEECCC
Confidence            9999987

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.30  E-value=6.5e-12  Score=93.60  Aligned_cols=84  Identities=20%  Similarity=0.239  Sum_probs=62.4

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCC-------------CCC---CCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFM-------------PDC---PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV  151 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~-------------~~~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~  151 (173)
                      +|+++|..|+|||||+++++...-.             .++   ....+.++......+..+..++.+|||||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            4899999999999999999864210             001   112233344444445556678999999999999888


Q ss_pred             hhhhhcCCCEEEEEEeCCCC
Q psy13826        152 TRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       152 ~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +..+++.+|++++|+|.++.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g  100 (237)
T cd04168          81 VERSLSVLDGAILVISAVEG  100 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCC
Confidence            88899999999999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.30  E-value=5.7e-12  Score=101.45  Aligned_cols=81  Identities=25%  Similarity=0.286  Sum_probs=56.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc--------cccccchhhhhc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ--------ERFRAVTRSYYR  157 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~--------~~~~~~~~~~~~  157 (173)
                      +|+++|++|||||||++++++...  ...+..+.. +.....+..++.  .+.+|||+|.        +.+......+++
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~-d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~   77 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTR-DRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIE   77 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCccc-CceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence            589999999999999999998763  222222221 222333344444  5889999996        333444566789


Q ss_pred             CCCEEEEEEeCCCC
Q psy13826        158 GAAGALMVIDVSHV  171 (173)
Q Consensus       158 ~~~~~ilv~d~t~~  171 (173)
                      .+|++++|+|.++.
T Consensus        78 ~ad~vl~vvD~~~~   91 (429)
T TIGR03594        78 EADVILFVVDGREG   91 (429)
T ss_pred             hCCEEEEEEeCCCC
Confidence            99999999998764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.28  E-value=6.8e-12  Score=87.93  Aligned_cols=72  Identities=18%  Similarity=0.276  Sum_probs=48.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc-----cccchhhhhcCCCEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-----FRAVTRSYYRGAAGA  162 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~~~~~~  162 (173)
                      +|+++|.+|||||||++++.+.. .. ..++.+.       .+...    .+|||||+..     +..+. ..++.+|++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~i   68 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-TL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDML   68 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-cc-CccceEE-------EECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEE
Confidence            79999999999999999977543 21 1223222       22222    2699999732     22222 247899999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      ++|||+++.+|
T Consensus        69 l~v~d~~~~~s   79 (158)
T PRK15467         69 IYVHGANDPES   79 (158)
T ss_pred             EEEEeCCCccc
Confidence            99999998764

>cd04163 Era Era subfamily

Probab=99.27  E-value=3.8e-11  Score=83.55  Aligned_cols=83  Identities=24%  Similarity=0.205  Sum_probs=56.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCC--CCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDC--PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VTRSY  155 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~--------~~~~~  155 (173)
                      ..+|+++|++|+|||||++++++.+.....  ..+...   ............+.+|||+|......        .....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   79 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN---RIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA   79 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec---eEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence            468999999999999999999987643221  112111   11112233456788999999754322        23446


Q ss_pred             hcCCCEEEEEEeCCCC
Q psy13826        156 YRGAAGALMVIDVSHV  171 (173)
Q Consensus       156 ~~~~~~~ilv~d~t~~  171 (173)
                      +..+|++++|+|++++
T Consensus        80 ~~~~d~i~~v~d~~~~   95 (168)
T cd04163          80 LKDVDLVLFVVDASEP   95 (168)
T ss_pred             HHhCCEEEEEEECCCc
Confidence            7889999999999986

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.25  E-value=2.4e-11  Score=103.41  Aligned_cols=84  Identities=20%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhhhhc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRSYYR  157 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--------~~~~~~~~~~  157 (173)
                      ..+|+++|.+|||||||++++++..... ..++.|.+..............+.+|||+|.+.        +......+++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~i-v~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  353 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAV-VEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS  353 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence            4789999999999999999999875421 122333333222222221234678999999763        2233345788


Q ss_pred             CCCEEEEEEeCCC
Q psy13826        158 GAAGALMVIDVSH  170 (173)
Q Consensus       158 ~~~~~ilv~d~t~  170 (173)
                      .+|++|+|+|.++
T Consensus       354 ~aD~iL~VvDa~~  366 (712)
T PRK09518        354 LADAVVFVVDGQV  366 (712)
T ss_pred             hCCEEEEEEECCC
Confidence            9999999999976

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.25  E-value=2.1e-11  Score=86.10  Aligned_cols=78  Identities=29%  Similarity=0.393  Sum_probs=51.9

Q ss_pred             EEeCCCCChHHHHHHHHhCCC-CCCCCC-ceeeeeEEEEEEECCeEEEEEEEeCCCccc----cccch---hhhhcCCCE
Q psy13826         91 IIGDMGVGKSCLLHQFTEQKF-MPDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVT---RSYYRGAAG  161 (173)
Q Consensus        91 l~G~~~vGKssl~~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----~~~~~---~~~~~~~~~  161 (173)
                      ++|++|||||||++++.+.++ ...+.. |.....  ..+.+++ ...+.+||+||...    .+.+.   ..+++.+|+
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   77 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNL--GVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA   77 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcc--eEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence            589999999999999999864 222222 222222  2233331 34678999999732    22232   235778999


Q ss_pred             EEEEEeCCCC
Q psy13826        162 ALMVIDVSHV  171 (173)
Q Consensus       162 ~ilv~d~t~~  171 (173)
                      +++|+|++++
T Consensus        78 ii~v~d~~~~   87 (176)
T cd01881          78 ILHVVDASED   87 (176)
T ss_pred             EEEEEeccCC
Confidence            9999999987

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.24  E-value=4e-11  Score=92.74  Aligned_cols=82  Identities=20%  Similarity=0.295  Sum_probs=58.3

Q ss_pred             EEEEeCCCCChHHHHHHHHhCCCC------CCCCCceeeeeEEEE---------------EEECC-eEEEEEEEeCCCc-
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQKFM------PDCPHTIGVEFGTRI---------------IEVHG-EKIKLQIWDTAGQ-  145 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~~~~------~~~~~t~~~~~~~~~---------------~~~~~-~~~~l~i~D~~g~-  145 (173)
                      |.++|.++||||||++++.+..+.      ..+.|++|..+....               ...++ +.+.+++||++|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            578999999999999999988743      223455554432110               11223 4478999999997 


Q ss_pred             ---cccccchhhh---hcCCCEEEEEEeCCC
Q psy13826        146 ---ERFRAVTRSY---YRGAAGALMVIDVSH  170 (173)
Q Consensus       146 ---~~~~~~~~~~---~~~~~~~ilv~d~t~  170 (173)
                         +++..+...+   +++||++++|+|++.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               4555565554   899999999999974

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.23  E-value=4.3e-11  Score=83.56  Aligned_cols=81  Identities=23%  Similarity=0.393  Sum_probs=58.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccchhhhhc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----------RFRAVTRSYYR  157 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~~~~  157 (173)
                      +|+++|++|+|||||++.++++.+.....++.+.+.....+..+.   .+.+||++|..          .+......|++
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            479999999999999999997777666677766555444444433   78899999942          33444455555


Q ss_pred             C---CCEEEEEEeCCCC
Q psy13826        158 G---AAGALMVIDVSHV  171 (173)
Q Consensus       158 ~---~~~~ilv~d~t~~  171 (173)
                      .   .+++++++|.++.
T Consensus        78 ~~~~~~~~~~v~d~~~~   94 (170)
T cd01876          78 NRENLKGVVLLIDSRHG   94 (170)
T ss_pred             hChhhhEEEEEEEcCcC
Confidence            4   5688899998765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG0080|consensus

Probab=99.23  E-value=7.9e-12  Score=85.70  Aligned_cols=86  Identities=23%  Similarity=0.255  Sum_probs=59.0

Q ss_pred             CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhh--hhccccCCCCCcceee
Q psy13826         10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL--VSKMSSSGQYSYSYIF   87 (173)
Q Consensus        10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~--~~~~~~~~~~~~~~~~   87 (173)
                      ..++..+||+++|++|||||||+.||+.+.|.+..+.|+|..+.-..-...+...+..+|+-  ...+.......+...-
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            46788999999999999999999999999999999999888776555555555445444433  2222222233333344


Q ss_pred             EEEEEeCC
Q psy13826         88 KYIIIGDM   95 (173)
Q Consensus        88 ki~l~G~~   95 (173)
                      -++++-+-
T Consensus        86 GiIlVYDV   93 (209)
T KOG0080|consen   86 GIILVYDV   93 (209)
T ss_pred             eeEEEEEc
Confidence            55555553

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.22  E-value=2.6e-11  Score=89.66  Aligned_cols=80  Identities=24%  Similarity=0.324  Sum_probs=54.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCC---CceeeeeEEEEEEE-CCeEEEEEEEeCCCccccc-----cchhhhhcC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCP---HTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFR-----AVTRSYYRG  158 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~---~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----~~~~~~~~~  158 (173)
                      ||+++|++++||||+.+....+-.+.++.   +|...+.    ..+ ....+.+++||+|||..+-     ......+++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~----~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~   76 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEK----SHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSN   76 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEE----EEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCT
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceE----EEEecCCCcEEEEEEcCCccccccccccccHHHHHhc
Confidence            79999999999999999988775443332   4444332    222 2345689999999997553     345678899


Q ss_pred             CCEEEEEEeCCCC
Q psy13826        159 AAGALMVIDVSHV  171 (173)
Q Consensus       159 ~~~~ilv~d~t~~  171 (173)
                      +.++|+|+|+.+.
T Consensus        77 v~~LIyV~D~qs~   89 (232)
T PF04670_consen   77 VGVLIYVFDAQSD   89 (232)
T ss_dssp             ESEEEEEEETT-S
T ss_pred             cCEEEEEEEcccc
Confidence            9999999999844

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.22  E-value=2.1e-11  Score=89.12  Aligned_cols=84  Identities=19%  Similarity=0.193  Sum_probs=56.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCC--------------------------CC---CceeeeeEEEEEEECCeEEEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPD--------------------------CP---HTIGVEFGTRIIEVHGEKIKLQ  138 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~--------------------------~~---~t~~~~~~~~~~~~~~~~~~l~  138 (173)
                      +|+++|.+|+|||||+++++...-...                          ..   ...|.+.......+......+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            589999999999999999975431110                          00   0012222222223333445678


Q ss_pred             EEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        139 IWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       139 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +|||||+++|.......++.+|++|+|+|+++.
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~  113 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKG  113 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence            999999988865556678899999999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.21  E-value=4.7e-11  Score=83.06  Aligned_cols=83  Identities=22%  Similarity=0.312  Sum_probs=54.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc------ccchhhhh--cC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF------RAVTRSYY--RG  158 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~------~~~~~~~~--~~  158 (173)
                      ++|+++|.||||||||+|++.+........|....+.....+.+.+  ..+.+.|+||.-..      +.+...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999874322223333344455566666  45678899995322      23334444  68


Q ss_pred             CCEEEEEEeCCCC
Q psy13826        159 AAGALMVIDVSHV  171 (173)
Q Consensus       159 ~~~~ilv~d~t~~  171 (173)
                      .|+++.|.|.++.
T Consensus        79 ~D~ii~VvDa~~l   91 (156)
T PF02421_consen   79 PDLIIVVVDATNL   91 (156)
T ss_dssp             SSEEEEEEEGGGH
T ss_pred             CCEEEEECCCCCH
Confidence            9999999999874

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.20  E-value=6.3e-11  Score=98.81  Aligned_cols=87  Identities=25%  Similarity=0.395  Sum_probs=65.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCC--CC-----CCC------CCceeeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FM-----PDC------PHTIGVEFGTRIIEV-----HGEKIKLQIWDTAGQE  146 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~-----~~~------~~t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~  146 (173)
                      ..-+++++|..++|||||+.+++...  +.     ..+      ..+.|.++....+.+     +++.+.+.+|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            34589999999999999999998632  11     111      123344444333333     5567899999999999


Q ss_pred             ccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        147 RFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       147 ~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +|...+..+++.+|++|+|+|+++.
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~g  110 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQG  110 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCC
Confidence            9998888999999999999999874

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.20  E-value=8.7e-11  Score=97.68  Aligned_cols=85  Identities=21%  Similarity=0.257  Sum_probs=60.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCC----CceeeeeEEEEEE--ECCeEE----------EEEEEeCCCccccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP----HTIGVEFGTRIIE--VHGEKI----------KLQIWDTAGQERFR  149 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~----~t~~~~~~~~~~~--~~~~~~----------~l~i~D~~g~~~~~  149 (173)
                      ...|+++|.+++|||||++++.+........    +++|..+......  ..+...          .+.+|||||++.|.
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            3469999999999999999998765433322    2344332211110  001111          26899999999999


Q ss_pred             cchhhhhcCCCEEEEEEeCCC
Q psy13826        150 AVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       150 ~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .++...++.+|++++|+|+++
T Consensus        86 ~~~~~~~~~aD~~IlVvDa~~  106 (586)
T PRK04004         86 NLRKRGGALADIAILVVDINE  106 (586)
T ss_pred             HHHHHhHhhCCEEEEEEECCC
Confidence            888888999999999999986

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.20  E-value=8.3e-11  Score=94.73  Aligned_cols=89  Identities=19%  Similarity=0.206  Sum_probs=62.8

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhC--CCCC------------------------C---CCCceeeeeEEEEEEECCeE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMP------------------------D---CPHTIGVEFGTRIIEVHGEK  134 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~--~~~~------------------------~---~~~t~~~~~~~~~~~~~~~~  134 (173)
                      ...++|+++|..++|||||+.+++..  ....                        +   .+...|.+.......+....
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            35689999999999999999999862  1110                        0   00111333333333445556


Q ss_pred             EEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       135 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      ..+.|||++|+++|.......++.+|++|+|+|+++.+
T Consensus        85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~  122 (426)
T TIGR00483        85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGE  122 (426)
T ss_pred             eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCC
Confidence            78999999999988655555678999999999999863

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.19  E-value=6.2e-11  Score=89.90  Aligned_cols=84  Identities=24%  Similarity=0.279  Sum_probs=58.2

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCC------c----------eeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPH------T----------IGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV  151 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~------t----------~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~  151 (173)
                      +|+++|.+|+|||||+++++..........      +          .+.........+......+.+|||+|...|...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            489999999999999999985431111000      0          011122222233334567889999999888777


Q ss_pred             hhhhhcCCCEEEEEEeCCCC
Q psy13826        152 TRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       152 ~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +..+++.+|++++|+|.++.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g  100 (268)
T cd04170          81 TRAALRAADAALVVVSAQSG  100 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCC
Confidence            78889999999999999874

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.19  E-value=1.2e-10  Score=90.74  Aligned_cols=84  Identities=19%  Similarity=0.217  Sum_probs=54.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCC-CCCC-CceeeeeEEEEEEECCeEEEEEEEeCCCccc----cccchhh---hh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRS---YY  156 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----~~~~~~~---~~  156 (173)
                      ...|.|+|.||||||||++++...... ..|+ .|....  ...+.+. ....+.+||+||...    ...+...   ++
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~--~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhi  234 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPN--LGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHI  234 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCce--EEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence            346789999999999999999976432 2222 222222  2223332 223578999999632    1223333   45


Q ss_pred             cCCCEEEEEEeCCCCC
Q psy13826        157 RGAAGALMVIDVSHVK  172 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~~  172 (173)
                      +.++++|+|+|+++++
T Consensus       235 e~a~vlI~ViD~s~~~  250 (335)
T PRK12299        235 ERTRLLLHLVDIEAVD  250 (335)
T ss_pred             hhcCEEEEEEcCCCCC
Confidence            5799999999999865

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.19  E-value=2e-10  Score=76.25  Aligned_cols=79  Identities=27%  Similarity=0.314  Sum_probs=52.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc----------ccchhhh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----------RAVTRSY  155 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~~~~~~  155 (173)
                      +|+++|.+|+|||||++.+++...  .....++.... ....+.+++..+  .++||||...-          ..... .
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~-~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~-~   76 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP-VYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLE-Q   76 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE-EEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHH-H
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeee-eeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHH-H
Confidence            689999999999999999998542  12222222222 233445566654  58999995321          12222 3


Q ss_pred             hcCCCEEEEEEeCCC
Q psy13826        156 YRGAAGALMVIDVSH  170 (173)
Q Consensus       156 ~~~~~~~ilv~d~t~  170 (173)
                      +..+|++++|+|.++
T Consensus        77 ~~~~d~ii~vv~~~~   91 (116)
T PF01926_consen   77 ISKSDLIIYVVDASN   91 (116)
T ss_dssp             HCTESEEEEEEETTS
T ss_pred             HHHCCEEEEEEECCC
Confidence            488999999999765

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG0072|consensus

Probab=99.18  E-value=8.6e-12  Score=84.01  Aligned_cols=83  Identities=29%  Similarity=0.502  Sum_probs=71.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ...+++++|..|+|||+++.++--++.. ...||+|.+...    +..+..++++||..|+-..+..|+.||.+.+++|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            5678999999999999999999877654 456788866543    33477889999999999999999999999999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |+|.+|++
T Consensus        92 VVDssd~d   99 (182)
T KOG0072|consen   92 VVDSSDRD   99 (182)
T ss_pred             EEeccchh
Confidence            99999975

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.18  E-value=1.5e-10  Score=98.89  Aligned_cols=85  Identities=19%  Similarity=0.253  Sum_probs=61.4

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc----------hhhh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV----------TRSY  155 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~----------~~~~  155 (173)
                      .++|+++|.+|||||||+|++.+....  .....|.++..+.-.+......+++||+||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            468999999999999999999887542  2233444454444445555667899999998766431          2234


Q ss_pred             h--cCCCEEEEEEeCCCCC
Q psy13826        156 Y--RGAAGALMVIDVSHVK  172 (173)
Q Consensus       156 ~--~~~~~~ilv~d~t~~~  172 (173)
                      +  ..+|++++|+|.++.+
T Consensus        81 l~~~~aD~vI~VvDat~le   99 (772)
T PRK09554         81 ILSGDADLLINVVDASNLE   99 (772)
T ss_pred             HhccCCCEEEEEecCCcch
Confidence            3  4799999999999865

>PRK00089 era GTPase Era; Reviewed

Probab=99.17  E-value=1.4e-10  Score=89.02  Aligned_cols=82  Identities=24%  Similarity=0.243  Sum_probs=54.8

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc--------cchhhh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------AVTRSY  155 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~~~~  155 (173)
                      .-.|+++|++|||||||++++++......  ...|..... . .+. .....++.+|||||.....        ......
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i-~-~i~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI-R-GIV-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE-E-EEE-EcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            35699999999999999999998765321  222222211 1 111 1233678999999964322        122345


Q ss_pred             hcCCCEEEEEEeCCC
Q psy13826        156 YRGAAGALMVIDVSH  170 (173)
Q Consensus       156 ~~~~~~~ilv~d~t~  170 (173)
                      +.++|++++|+|+++
T Consensus        82 ~~~~D~il~vvd~~~   96 (292)
T PRK00089         82 LKDVDLVLFVVDADE   96 (292)
T ss_pred             HhcCCEEEEEEeCCC
Confidence            788999999999987

>cd00880 Era_like Era (E

Probab=99.17  E-value=1.6e-10  Score=79.47  Aligned_cols=81  Identities=20%  Similarity=0.182  Sum_probs=53.9

Q ss_pred             EEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc-------hhhhhcCCCEE
Q psy13826         91 IIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-------TRSYYRGAAGA  162 (173)
Q Consensus        91 l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~-------~~~~~~~~~~~  162 (173)
                      ++|++|+|||||++++++..... ...+.............. ....+.+||++|...+...       ...+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            58999999999999999875442 112111111112122221 1457899999998766433       33478999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      ++|+|.++..
T Consensus        80 l~v~~~~~~~   89 (163)
T cd00880          80 LFVVDADLRA   89 (163)
T ss_pred             EEEEeCCCCC
Confidence            9999998875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.16  E-value=1.2e-10  Score=93.79  Aligned_cols=86  Identities=20%  Similarity=0.208  Sum_probs=61.3

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCC--------------------------C---CCCceeeeeEEEEEEECCeEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP--------------------------D---CPHTIGVEFGTRIIEVHGEKI  135 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~--------------------------~---~~~t~~~~~~~~~~~~~~~~~  135 (173)
                      ..++|+++|.+++|||||+++++...-..                          +   .+...|.+.......+.....
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~   84 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY   84 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence            46899999999999999999998432110                          0   001233334444444555667


Q ss_pred             EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .+.+|||||+++|.......++.+|++|+|+|+++
T Consensus        85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~  119 (425)
T PRK12317         85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADD  119 (425)
T ss_pred             EEEEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence            89999999998886544455688999999999987

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.15  E-value=1.2e-10  Score=85.80  Aligned_cols=84  Identities=19%  Similarity=0.300  Sum_probs=59.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCC--CCC------------CCceeeeeEEE--EEEEC--------CeEEEEEEEeCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFM--PDC------------PHTIGVEFGTR--IIEVH--------GEKIKLQIWDTA  143 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~--~~~------------~~t~~~~~~~~--~~~~~--------~~~~~l~i~D~~  143 (173)
                      +|+++|..++|||||+.+++...-.  ...            +...|.+....  .+...        ++.+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6899999999999999999854311  000            00111221111  11222        447889999999


Q ss_pred             CccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        144 GQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       144 g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      |++.|......+++.+|++++|||+++.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g  109 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEG  109 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCC
Confidence            9999998888999999999999999864

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.15  E-value=2.2e-10  Score=89.25  Aligned_cols=83  Identities=20%  Similarity=0.241  Sum_probs=55.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCC-CCCCC-ceeeeeEEEEEEECCeEEEEEEEeCCCcccc----ccchhhhh---
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----RAVTRSYY---  156 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----~~~~~~~~---  156 (173)
                      ...|+++|.+|||||||++++...+.. ..|+. |...  ....+.+++ ...+.+||+||....    ..+...++   
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p--~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhi  233 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVP--NLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHI  233 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCC--EEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHH
Confidence            457889999999999999999986532 22221 2221  122233433 356889999997422    23444444   


Q ss_pred             cCCCEEEEEEeCCCC
Q psy13826        157 RGAAGALMVIDVSHV  171 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~  171 (173)
                      ..++++|+|+|+++.
T Consensus       234 erad~ll~VvD~s~~  248 (329)
T TIGR02729       234 ERTRVLLHLIDISPL  248 (329)
T ss_pred             HhhCEEEEEEcCccc
Confidence            469999999999975

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0095|consensus

Probab=99.14  E-value=4e-11  Score=81.34  Aligned_cols=88  Identities=25%  Similarity=0.422  Sum_probs=59.2

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhh--hhhhccccCCCCCcceeeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLW--ALVSKMSSSGQYSYSYIFK   88 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~--~~~~~~~~~~~~~~~~~~k   88 (173)
                      .|.+.+||+++|+.|||||||++||+++-|++....|+|..++-.....++...+.-+|  +....+.+..+..+...--
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            57899999999999999999999999999999999998877765555444433333232  2233333333333444444


Q ss_pred             EEEEeCCCCC
Q psy13826         89 YIIIGDMGVG   98 (173)
Q Consensus        89 i~l~G~~~vG   98 (173)
                      ++++-+-.+-
T Consensus        83 lilvydiscq   92 (213)
T KOG0095|consen   83 LILVYDISCQ   92 (213)
T ss_pred             EEEEEecccC
Confidence            5555554443

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.14  E-value=1.4e-10  Score=96.50  Aligned_cols=83  Identities=22%  Similarity=0.342  Sum_probs=64.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC--CCCCCC------------CCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ--KFMPDC------------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTR  153 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~--~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~  153 (173)
                      +|+++|..++|||||+.+++..  .+....            ....|.++......+..+.+.+.+|||||+.+|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            7999999999999999999863  332211            12335555555555555667899999999999988888


Q ss_pred             hhhcCCCEEEEEEeCCC
Q psy13826        154 SYYRGAAGALMVIDVSH  170 (173)
Q Consensus       154 ~~~~~~~~~ilv~d~t~  170 (173)
                      .+++.+|++++|+|.++
T Consensus        83 ~~l~~aD~alLVVDa~~   99 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASE   99 (594)
T ss_pred             HHHHhCCEEEEEEeCCC
Confidence            89999999999999975

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG0094|consensus

Probab=99.13  E-value=8.1e-11  Score=83.22  Aligned_cols=60  Identities=22%  Similarity=0.174  Sum_probs=44.9

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE--eeccCcccchhhhhhh
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL--VSTSQPITRKNLLWAL   71 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~--~s~~~~~~~k~l~~~~   71 (173)
                      +-..+|||+|||.+||||||+.||+.+.|...|++|+|..++..  ....+....+.|..+.
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG   80 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   80 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEeccc
Confidence            34568999999999999999999999999999999977655443  3344444444444333

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.12  E-value=3.6e-10  Score=94.23  Aligned_cols=78  Identities=24%  Similarity=0.319  Sum_probs=57.4

Q ss_pred             eCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc------hhhhh--cCCCEEEE
Q psy13826         93 GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV------TRSYY--RGAAGALM  164 (173)
Q Consensus        93 G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~------~~~~~--~~~~~~il  164 (173)
                      |++|||||||+|++.+..+.....|....+.....+..++.  .+++|||||+..+...      .+.++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999988764444455555555555555554  4789999999877543      34444  37999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |+|.++.+
T Consensus        79 VvDat~le   86 (591)
T TIGR00437        79 VVDASNLE   86 (591)
T ss_pred             EecCCcch
Confidence            99999864

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.11  E-value=4.7e-10  Score=78.72  Aligned_cols=87  Identities=28%  Similarity=0.531  Sum_probs=66.6

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCC--------CC----CCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP--------DC----PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA  150 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~--------~~----~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~  150 (173)
                      .....||++.|+.++|||+++.+++....+.        .+    ..|+..++....  ++ ....+++++||||++|+.
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~--~~-~~~~v~LfgtPGq~RF~f   83 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIE--LD-EDTGVHLFGTPGQERFKF   83 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceE--Ec-CcceEEEecCCCcHHHHH
Confidence            3456899999999999999999999876321        11    134444443322  22 234688999999999999


Q ss_pred             chhhhhcCCCEEEEEEeCCCCC
Q psy13826        151 VTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       151 ~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      +|..+.+.+.++|++.|.+.+.
T Consensus        84 m~~~l~~ga~gaivlVDss~~~  105 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPI  105 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCc
Confidence            9999999999999999988763

>KOG0092|consensus

Probab=99.11  E-value=7.3e-11  Score=83.19  Aligned_cols=58  Identities=29%  Similarity=0.440  Sum_probs=48.1

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhh
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL   71 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~   71 (173)
                      ..+||++||+++||||||+.||+.++|.+...+|+|..++.......+...+-.+|+-
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDT   61 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDT   61 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEc
Confidence            4689999999999999999999999999999999998887777666665555444433

>TIGR00503 prfC peptide chain release factor 3

Probab=99.10  E-value=4.1e-10  Score=92.66  Aligned_cols=87  Identities=21%  Similarity=0.284  Sum_probs=65.5

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhC-CCCC----------------C---CCCceeeeeEEEEEEECCeEEEEEEEeCC
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQ-KFMP----------------D---CPHTIGVEFGTRIIEVHGEKIKLQIWDTA  143 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~-~~~~----------------~---~~~t~~~~~~~~~~~~~~~~~~l~i~D~~  143 (173)
                      ....+++++|.+++|||||+.+++.. ....                +   .....|.++......++.+.+.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            34679999999999999999998631 1110                0   11123555555556666777889999999


Q ss_pred             CccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        144 GQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       144 g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      |+..|.......++.+|++|+|+|.++
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~  115 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAK  115 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCC
Confidence            999888766778899999999999876

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.10  E-value=3.4e-10  Score=82.49  Aligned_cols=85  Identities=19%  Similarity=0.164  Sum_probs=54.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEE--EEC---------------------------C----
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRII--EVH---------------------------G----  132 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~--~~~---------------------------~----  132 (173)
                      ++|+++|..|+|||||+..+.+-.... ...-..+.++.....  ...                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            478999999999999999997542111 000011111111100  000                           0    


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      ....+.+|||||++.|.......+..+|++++|+|++++
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~  119 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP  119 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC
Confidence            115789999999998876666677889999999999873

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.10  E-value=3.6e-10  Score=89.68  Aligned_cols=88  Identities=28%  Similarity=0.327  Sum_probs=63.3

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCC--CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch------
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT------  152 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~------  152 (173)
                      .....-+|++++|.||||||||+|.+++.+  .+.+...|..+-. ...+.+++  +.+.+.||+|........      
T Consensus       212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDvi-ee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIe  288 (454)
T COG0486         212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVI-EEDINLNG--IPVRLVDTAGIRETDDVVERIGIE  288 (454)
T ss_pred             hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceE-EEEEEECC--EEEEEEecCCcccCccHHHHHHHH
Confidence            345567999999999999999999999876  3444454554433 33444554  556788999975443222      


Q ss_pred             --hhhhcCCCEEEEEEeCCCC
Q psy13826        153 --RSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       153 --~~~~~~~~~~ilv~d~t~~  171 (173)
                        ...+.+||.+++|+|.+.+
T Consensus       289 Rs~~~i~~ADlvL~v~D~~~~  309 (454)
T COG0486         289 RAKKAIEEADLVLFVLDASQP  309 (454)
T ss_pred             HHHHHHHhCCEEEEEEeCCCC
Confidence              3467899999999999985

>PRK13351 elongation factor G; Reviewed

Probab=99.09  E-value=2.8e-10  Score=96.67  Aligned_cols=88  Identities=18%  Similarity=0.209  Sum_probs=62.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCC-------------CCCCCC---ceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKF-------------MPDCPH---TIGVEFGTRIIEVHGEKIKLQIWDTAGQER  147 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~-------------~~~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~  147 (173)
                      +...+|+++|..++|||||+++++...-             ..++.+   ..+.+.......+......+.+|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            3467999999999999999999985321             111000   112222222223333467889999999999


Q ss_pred             cccchhhhhcCCCEEEEEEeCCCC
Q psy13826        148 FRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       148 ~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      |...+..+++.+|++|+|+|.++.
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~  109 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTG  109 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCC
Confidence            988888999999999999999875

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.09  E-value=3.9e-10  Score=81.80  Aligned_cols=82  Identities=13%  Similarity=0.201  Sum_probs=50.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceee-eeEEEEEEEC-CeEEEEEEEeCCCccccccchhh-----hhcC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGV-EFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRS-----YYRG  158 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~-----~~~~  158 (173)
                      .+||+++|++|||||||++.+++..+......+.+. ........+. .....+.+||++|..........     .+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            378999999999999999999987665433333331 1100000111 11236889999997543222222     3677


Q ss_pred             CCEEEEEEe
Q psy13826        159 AAGALMVID  167 (173)
Q Consensus       159 ~~~~ilv~d  167 (173)
                      +|+++++.|
T Consensus        81 ~d~~l~v~~   89 (197)
T cd04104          81 YDFFIIISS   89 (197)
T ss_pred             cCEEEEEeC
Confidence            899888743

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG0078|consensus

Probab=99.09  E-value=2.3e-11  Score=86.96  Aligned_cols=85  Identities=27%  Similarity=0.467  Sum_probs=59.3

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhhhhccccCCCCCcc------
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYS------   84 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~------   84 (173)
                      .+++.+||+++||++|||||++.||.++.|...+..|+|..+.-......+...+.-+|      ..++|+.+.      
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiW------DtaGQerf~ti~~sY   81 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIW------DTAGQERFRTITTAY   81 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEE------EcccchhHHHHHHHH
Confidence            58999999999999999999999999999999999997766644444443333332222      234444433      


Q ss_pred             --eeeEEEEEeCCCCChHH
Q psy13826         85 --YIFKYIIIGDMGVGKSC  101 (173)
Q Consensus        85 --~~~ki~l~G~~~vGKss  101 (173)
                        ....++++=+----||.
T Consensus        82 yrgA~gi~LvyDitne~Sf  100 (207)
T KOG0078|consen   82 YRGAMGILLVYDITNEKSF  100 (207)
T ss_pred             HhhcCeeEEEEEccchHHH
Confidence              34566666666555654

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.09  E-value=2.6e-10  Score=93.80  Aligned_cols=87  Identities=22%  Similarity=0.270  Sum_probs=64.0

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCC-----------------CCCC---CceeeeeEEEEEEECCeEEEEEEEeCC
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-----------------PDCP---HTIGVEFGTRIIEVHGEKIKLQIWDTA  143 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~-----------------~~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~  143 (173)
                      ....+|+++|..++|||||+.+++...-.                 .++.   ...|.++......+..+.+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            34669999999999999999999741100                 0001   122444444445555566789999999


Q ss_pred             CccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        144 GQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       144 g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      |++.|......+++.+|++|+|+|.++
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~  114 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAK  114 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCC
Confidence            999998777778999999999999976

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.09  E-value=7.6e-10  Score=88.08  Aligned_cols=83  Identities=22%  Similarity=0.295  Sum_probs=57.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCC-CC-----CCceeeeeEEEEE---------------EEC-CeEEEEEEEeCCC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DC-----PHTIGVEFGTRII---------------EVH-GEKIKLQIWDTAG  144 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~-----~~t~~~~~~~~~~---------------~~~-~~~~~l~i~D~~g  144 (173)
                      +||.++|.||||||||++++.+.++.. +|     .|+.|..+....+               ..+ ...+.+++||++|
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            689999999999999999999877543 33     2344432210000               011 2346799999999


Q ss_pred             c----cccccchhhh---hcCCCEEEEEEeCC
Q psy13826        145 Q----ERFRAVTRSY---YRGAAGALMVIDVS  169 (173)
Q Consensus       145 ~----~~~~~~~~~~---~~~~~~~ilv~d~t  169 (173)
                      .    .....+...+   ++++|++++|+|..
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    3344555566   88999999999997

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.07  E-value=9.3e-10  Score=88.13  Aligned_cols=82  Identities=20%  Similarity=0.187  Sum_probs=53.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCC-CCCCC-ceeeeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhhh---c
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRSYY---R  157 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----~~~~~~~~~---~  157 (173)
                      ..|+++|.||||||||++++++.+.. ..++- |...+.  ..+.++. ...+.+||+||...    ...+...|+   .
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~Pnl--G~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhie  235 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNL--GVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIE  235 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEE--EEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHh
Confidence            47899999999999999999986532 12222 222222  2233321 34688999999632    223444444   4


Q ss_pred             CCCEEEEEEeCCCC
Q psy13826        158 GAAGALMVIDVSHV  171 (173)
Q Consensus       158 ~~~~~ilv~d~t~~  171 (173)
                      .++++|+|+|+++.
T Consensus       236 r~~llI~VID~s~~  249 (424)
T PRK12297        236 RTRVIVHVIDMSGS  249 (424)
T ss_pred             hCCEEEEEEeCCcc
Confidence            59999999999864

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.06  E-value=4.9e-10  Score=85.03  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=59.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCC-------------CCC---CceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMP-------------DCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV  151 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~-------------~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~  151 (173)
                      +|+++|.+++|||||+++++...-..             ++.   ...|.+.......+..+...+.+|||||...|...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            48899999999999999997421100             001   12233333333344344567889999999888877


Q ss_pred             hhhhhcCCCEEEEEEeCCC
Q psy13826        152 TRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       152 ~~~~~~~~~~~ilv~d~t~  170 (173)
                      +...++.+|++|+|+|.++
T Consensus        81 ~~~~l~~aD~ailVVDa~~   99 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVA   99 (270)
T ss_pred             HHHHHHHcCEEEEEEECCC
Confidence            8889999999999999875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG0087|consensus

Probab=99.06  E-value=1.7e-10  Score=82.49  Aligned_cols=56  Identities=34%  Similarity=0.456  Sum_probs=46.1

Q ss_pred             CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccch
Q psy13826         10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRK   65 (173)
Q Consensus        10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k   65 (173)
                      ..+|+.+||+++||++||||-|+.||..++|..+..+|+|..+........+...+
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vk   64 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVK   64 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEE
Confidence            47899999999999999999999999999999999999887665554444333333

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.05  E-value=1e-09  Score=89.18  Aligned_cols=83  Identities=17%  Similarity=0.199  Sum_probs=54.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc----cccchh---hhhc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTR---SYYR  157 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----~~~~~~---~~~~  157 (173)
                      ..+|+|+|.||||||||++++.+..... +|+-|. .......+.+++  ..+.+||+||...    ...+..   .++.
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTT-l~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie  235 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTT-LVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE  235 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCccc-ccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence            4678999999999999999999765322 222221 112222333433  5789999999532    111222   2457


Q ss_pred             CCCEEEEEEeCCCC
Q psy13826        158 GAAGALMVIDVSHV  171 (173)
Q Consensus       158 ~~~~~ilv~d~t~~  171 (173)
                      .++++|+|+|+++.
T Consensus       236 radvLv~VVD~s~~  249 (500)
T PRK12296        236 RCAVLVHVVDCATL  249 (500)
T ss_pred             hcCEEEEEECCccc
Confidence            79999999999864

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.05  E-value=5.8e-10  Score=95.06  Aligned_cols=87  Identities=21%  Similarity=0.279  Sum_probs=64.9

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhC---------------CCCCC---CCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQ---------------KFMPD---CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~---------------~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~  145 (173)
                      ....+|+++|..++|||||+.+++..               .+...   ...|+........+..++..+.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            34679999999999999999999853               11111   1124333332333345677889999999999


Q ss_pred             cccccchhhhhcCCCEEEEEEeCCC
Q psy13826        146 ERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       146 ~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .+|.......++.+|++|+|+|..+
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~  121 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVE  121 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCC
Confidence            9988777888999999999999875

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1423|consensus

Probab=99.00  E-value=2.9e-09  Score=80.50  Aligned_cols=91  Identities=21%  Similarity=0.197  Sum_probs=60.7

Q ss_pred             CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc------c--
Q psy13826         80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------V--  151 (173)
Q Consensus        80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------~--  151 (173)
                      .++..+.+.|+++|.||||||+|.|.+++..........-.. .....-.+.....++.++||||.-.-..      .  
T Consensus        66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TT-r~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s  144 (379)
T KOG1423|consen   66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTT-RHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS  144 (379)
T ss_pred             chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccce-eeeeeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence            355678899999999999999999999998754432221111 1111222445567889999999422111      1  


Q ss_pred             ----hhhhhcCCCEEEEEEeCCCC
Q psy13826        152 ----TRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       152 ----~~~~~~~~~~~ilv~d~t~~  171 (173)
                          -...+..||++++++|+++.
T Consensus       145 ~lq~~~~a~q~AD~vvVv~Das~t  168 (379)
T KOG1423|consen  145 VLQNPRDAAQNADCVVVVVDASAT  168 (379)
T ss_pred             hhhCHHHHHhhCCEEEEEEeccCC
Confidence                12245679999999999963

>KOG1707|consensus

Probab=99.00  E-value=6e-10  Score=90.15  Aligned_cols=88  Identities=25%  Similarity=0.320  Sum_probs=66.6

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...++|+++|+.|||||||+..++.++|+++.++.... + .....+.-..+...|.|++..+.-+.....-++.||++.
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~-i-~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR-I-LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc-c-ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            35689999999999999999999999998876653321 1 111233344555788999877665555677789999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      ++|+++++++
T Consensus        85 lvyavd~~~T   94 (625)
T KOG1707|consen   85 LVYAVDDEST   94 (625)
T ss_pred             EEEecCChHH
Confidence            9999999753

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.00  E-value=5.7e-10  Score=83.16  Aligned_cols=91  Identities=23%  Similarity=0.376  Sum_probs=61.4

Q ss_pred             CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEE-EEEECCeEEEEEEEeCCCccc-------cccc
Q psy13826         80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR-IIEVHGEKIKLQIWDTAGQER-------FRAV  151 (173)
Q Consensus        80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~l~i~D~~g~~~-------~~~~  151 (173)
                      +......++++++|..|+||||++|+++.++..+...--.+.+.... ...+++  -.+.+||+||-+.       ++..
T Consensus        33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~  110 (296)
T COG3596          33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQL  110 (296)
T ss_pred             hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHH
Confidence            34455678999999999999999999997654332211111111111 122333  3688999999654       5555


Q ss_pred             hhhhhcCCCEEEEEEeCCCCC
Q psy13826        152 TRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       152 ~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      ...++...|.++++.|..|+.
T Consensus       111 ~~d~l~~~DLvL~l~~~~dra  131 (296)
T COG3596         111 YRDYLPKLDLVLWLIKADDRA  131 (296)
T ss_pred             HHHHhhhccEEEEeccCCCcc
Confidence            667888899999998888764

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.99  E-value=1.9e-09  Score=77.07  Aligned_cols=89  Identities=28%  Similarity=0.446  Sum_probs=66.0

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC----------cccc
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERF  148 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g----------~~~~  148 (173)
                      .+.+.+....|+++|.+|||||||+|.+++..-....+.|.|.+.....+.++++   +.+.|.||          ++.+
T Consensus        17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w   93 (200)
T COG0218          17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKW   93 (200)
T ss_pred             hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHH
Confidence            3444556779999999999999999999998766666777887776666677665   67889999          3445


Q ss_pred             ccchhhhhcC---CCEEEEEEeCCC
Q psy13826        149 RAVTRSYYRG---AAGALMVIDVSH  170 (173)
Q Consensus       149 ~~~~~~~~~~---~~~~ilv~d~t~  170 (173)
                      ..+...|++.   -.+++++.|+-.
T Consensus        94 ~~~i~~YL~~R~~L~~vvlliD~r~  118 (200)
T COG0218          94 KKLIEEYLEKRANLKGVVLLIDARH  118 (200)
T ss_pred             HHHHHHHHhhchhheEEEEEEECCC
Confidence            5555666654   457777778754

>COG1159 Era GTPase [General function prediction only]

Probab=98.99  E-value=1.1e-09  Score=82.41  Aligned_cols=82  Identities=28%  Similarity=0.311  Sum_probs=54.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCC--CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc--------cchhhh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------AVTRSY  155 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~~~~  155 (173)
                      .--|+++|.||||||||+|++++....-  .-..|..... ...  +.....++.+.||||-.+-.        ......
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I-~GI--~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI-RGI--VTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhhe-eEE--EEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            4568999999999999999999987432  1222322222 112  22235677889999953322        112345


Q ss_pred             hcCCCEEEEEEeCCC
Q psy13826        156 YRGAAGALMVIDVSH  170 (173)
Q Consensus       156 ~~~~~~~ilv~d~t~  170 (173)
                      +.++|++++|.|.+.
T Consensus        83 l~dvDlilfvvd~~~   97 (298)
T COG1159          83 LKDVDLILFVVDADE   97 (298)
T ss_pred             hccCcEEEEEEeccc
Confidence            789999999999986

>PRK12735 elongation factor Tu; Reviewed

Probab=98.98  E-value=2.6e-09  Score=85.29  Aligned_cols=88  Identities=16%  Similarity=0.171  Sum_probs=61.1

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhC-------CC-----CC--CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQ-------KF-----MP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF  148 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~-------~~-----~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~  148 (173)
                      ....++|+++|..++|||||++++++.       .+     .+  ......|.+.......+......+.++||||+++|
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence            345689999999999999999999862       11     00  01112344444444444444556789999999887


Q ss_pred             ccchhhhhcCCCEEEEEEeCCC
Q psy13826        149 RAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       149 ~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .......+..+|++++|+|+++
T Consensus        89 ~~~~~~~~~~aD~~llVvda~~  110 (396)
T PRK12735         89 VKNMITGAAQMDGAILVVSAAD  110 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCC
Confidence            6544556778999999999876

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.98  E-value=1.6e-09  Score=78.42  Aligned_cols=80  Identities=16%  Similarity=0.266  Sum_probs=51.4

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCC----CCceeeeeEEEEEEECCeEEEEEEEeCCCccccc--------cch--
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDC----PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------AVT--  152 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~--  152 (173)
                      ++|+++|.+|||||||+|.+++.+.....    ..|....  ......++.  .+.++||||-....        .+.  
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~--~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~   76 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQ--KESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRC   76 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccc--eeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHH
Confidence            47999999999999999999987643222    1122211  222233443  57888999964331        111  


Q ss_pred             -hhhhcCCCEEEEEEeCCC
Q psy13826        153 -RSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       153 -~~~~~~~~~~ilv~d~t~  170 (173)
                       .......|++|+|.|+.+
T Consensus        77 ~~~~~~g~~~illVi~~~~   95 (196)
T cd01852          77 LSLSAPGPHAFLLVVPLGR   95 (196)
T ss_pred             HHhcCCCCEEEEEEEECCC
Confidence             112357899999999875

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.98  E-value=2.6e-09  Score=77.42  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=60.3

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCC-------C----CC---CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKF-------M----PD---CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV  151 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~-------~----~~---~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~  151 (173)
                      .++|+++|..++|||||+++++....       .    .+   .+...|.+.......+......+.+.||||...|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            47899999999999999999986410       0    00   0112344444444445455567789999999888766


Q ss_pred             hhhhhcCCCEEEEEEeCCC
Q psy13826        152 TRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       152 ~~~~~~~~~~~ilv~d~t~  170 (173)
                      ....+..+|++++|+|.+.
T Consensus        82 ~~~~~~~~D~~ilVvda~~  100 (195)
T cd01884          82 MITGAAQMDGAILVVSATD  100 (195)
T ss_pred             HHHHhhhCCEEEEEEECCC
Confidence            6667889999999999875

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0394|consensus

Probab=98.97  E-value=9.5e-10  Score=77.16  Aligned_cols=88  Identities=25%  Similarity=0.260  Sum_probs=56.2

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE--eeccCcccchhhhhhhhhccccCCCCCcceeeEEE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL--VSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYI   90 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~--~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~   90 (173)
                      ...+||+++||+|||||||++||+.++|...|..|++..++..  ..........-|..+...++++.+..-++-.=-++
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            3578999999999999999999999999999999988655433  33333333343444444444444333333333445


Q ss_pred             EEeCCCCChH
Q psy13826         91 IIGDMGVGKS  100 (173)
Q Consensus        91 l~G~~~vGKs  100 (173)
                      ++=+-+.-||
T Consensus        87 lvydv~~~~S   96 (210)
T KOG0394|consen   87 LVYDVNNPKS   96 (210)
T ss_pred             EEeecCChhh
Confidence            5545444443

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.97  E-value=2.3e-09  Score=85.57  Aligned_cols=87  Identities=17%  Similarity=0.196  Sum_probs=60.5

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhC------C-C-----CCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQ------K-F-----MPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR  149 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~------~-~-----~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~  149 (173)
                      ...++|+++|..++|||||+.++++.      . +     .+.  .+...|.+.....+.+......+.+|||||+++|.
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~   89 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence            45689999999999999999999742      0 0     000  01123344444445555556678899999999886


Q ss_pred             cchhhhhcCCCEEEEEEeCCC
Q psy13826        150 AVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       150 ~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .........+|++++|+|+++
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~  110 (394)
T TIGR00485        90 KNMITGAAQMDGAILVVSATD  110 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCC
Confidence            444445567899999999976

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.96  E-value=4.7e-09  Score=80.41  Aligned_cols=83  Identities=17%  Similarity=0.194  Sum_probs=51.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc-------hhh
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-------TRS  154 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~-------~~~  154 (173)
                      ...++|+++|.+||||||++|++++.+..  ....++ +..........+  ...+.++||||.......       ...
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~-t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSE-GLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCc-ceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            56789999999999999999999987632  122211 111111112223  457899999997644221       111


Q ss_pred             hh--cCCCEEEEEEeCC
Q psy13826        155 YY--RGAAGALMVIDVS  169 (173)
Q Consensus       155 ~~--~~~~~~ilv~d~t  169 (173)
                      ++  ...|++++|.+++
T Consensus       113 ~l~~~g~DvVLyV~rLD  129 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLD  129 (313)
T ss_pred             HhhcCCCCEEEEEeccC
Confidence            22  2589999996554

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.96  E-value=1.5e-09  Score=80.05  Aligned_cols=84  Identities=20%  Similarity=0.251  Sum_probs=57.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCC---------------------------CCC--CCCceeeeeEEEEEEECCeEEEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKF---------------------------MPD--CPHTIGVEFGTRIIEVHGEKIKLQ  138 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~---------------------------~~~--~~~t~~~~~~~~~~~~~~~~~~l~  138 (173)
                      +|+++|..++|||||+.+++...-                           .+.  .....|.+.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            489999999999999999963210                           000  001123333333333444566889


Q ss_pred             EEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        139 IWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       139 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +|||+|+..|.......++.+|++|+|+|.++.
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~  113 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG  113 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence            999999987765555667889999999999874

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.95  E-value=4.1e-09  Score=88.24  Aligned_cols=82  Identities=20%  Similarity=0.260  Sum_probs=56.4

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC---CCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ---KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      -|.++|..++|||||++++.+.   .+.++....+..+.....+...+ ...+.+||+||+++|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            4789999999999999999863   33333322222222222222222 2247899999999987666667889999999


Q ss_pred             EEeCCC
Q psy13826        165 VIDVSH  170 (173)
Q Consensus       165 v~d~t~  170 (173)
                      |+|+++
T Consensus        81 VVda~e   86 (614)
T PRK10512         81 VVACDD   86 (614)
T ss_pred             EEECCC
Confidence            999876

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.95  E-value=8.6e-10  Score=87.35  Aligned_cols=81  Identities=23%  Similarity=0.248  Sum_probs=56.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc---------cchhhh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR---------AVTRSY  155 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~---------~~~~~~  155 (173)
                      ..|+++|.||||||||.||+++.+.  ..+++.+..+.. .......+..  +.+.||+|-+.-.         ......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~-y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~A   80 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRI-YGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIA   80 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCc-cceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence            4799999999999999999998863  344444444333 2233444444  7788999976322         112345


Q ss_pred             hcCCCEEEEEEeCCC
Q psy13826        156 YRGAAGALMVIDVSH  170 (173)
Q Consensus       156 ~~~~~~~ilv~d~t~  170 (173)
                      +..||++|||+|...
T Consensus        81 i~eADvilfvVD~~~   95 (444)
T COG1160          81 IEEADVILFVVDGRE   95 (444)
T ss_pred             HHhCCEEEEEEeCCC
Confidence            788999999999754

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.94  E-value=4.8e-10  Score=80.67  Aligned_cols=85  Identities=26%  Similarity=0.319  Sum_probs=59.5

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCC----------------CCceeeeeEEEEEEEC--CeEEEEEEEeCCCccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDC----------------PHTIGVEFGTRIIEVH--GEKIKLQIWDTAGQER  147 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~----------------~~t~~~~~~~~~~~~~--~~~~~l~i~D~~g~~~  147 (173)
                      ..+|+++|..++|||||+.+++........                ....+.+.........  .....+.++|+||+..
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~   82 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED   82 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence            578999999999999999999955421100                0001111111122222  4556788999999999


Q ss_pred             cccchhhhhcCCCEEEEEEeCCC
Q psy13826        148 FRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       148 ~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      |.......++.+|++|+|+|..+
T Consensus        83 f~~~~~~~~~~~D~ailvVda~~  105 (188)
T PF00009_consen   83 FIKEMIRGLRQADIAILVVDAND  105 (188)
T ss_dssp             HHHHHHHHHTTSSEEEEEEETTT
T ss_pred             eeecccceecccccceeeeeccc
Confidence            88777778999999999999875

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.91  E-value=4e-09  Score=89.71  Aligned_cols=88  Identities=17%  Similarity=0.149  Sum_probs=61.9

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCC----CCCC------------ceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP----DCPH------------TIGVEFGTRIIEVHGEKIKLQIWDTAGQER  147 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~----~~~~------------t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~  147 (173)
                      +...+|+++|..++|||||+++++...-..    ...+            ..|.+.......+......+.+|||||+.+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   87 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD   87 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence            346699999999999999999997422110    0000            122333333333333456789999999998


Q ss_pred             cccchhhhhcCCCEEEEEEeCCCC
Q psy13826        148 FRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       148 ~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      |.......++.+|++|+|+|.++.
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g  111 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGG  111 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCC
Confidence            877778889999999999998863

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.91  E-value=6.7e-10  Score=79.00  Aligned_cols=79  Identities=27%  Similarity=0.493  Sum_probs=51.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEE-CCeEEEEEEEeCCCcccccc-chhh--hhcCCCEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRA-VTRS--YYRGAAGAL  163 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~-~~~~--~~~~~~~~i  163 (173)
                      .|+++|++|+|||+|..++..+.......+. ..+.   ...+ +...-.+.+.|+||+++.+. +...  +...+.++|
T Consensus         5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            5899999999999999999999765543322 2211   1112 22334577889999998874 3343  578899999


Q ss_pred             EEEeCCC
Q psy13826        164 MVIDVSH  170 (173)
Q Consensus       164 lv~d~t~  170 (173)
                      +|.|.+.
T Consensus        81 fvvDSs~   87 (181)
T PF09439_consen   81 FVVDSST   87 (181)
T ss_dssp             EEEETTT
T ss_pred             EEEeCcc
Confidence            9999863

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.91  E-value=1.8e-09  Score=71.90  Aligned_cols=34  Identities=41%  Similarity=0.475  Sum_probs=28.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCC-Ccee
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-HTIG  120 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~-~t~~  120 (173)
                      +|++++|+.|||||+|+.++....|...+. +|++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~   35 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG   35 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh
Confidence            589999999999999999998887765554 5554

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.91  E-value=5.6e-09  Score=71.38  Aligned_cols=72  Identities=22%  Similarity=0.366  Sum_probs=49.2

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc----cccccchhhhhcCCCEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----ERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----~~~~~~~~~~~~~~~~~i  163 (173)
                      ||+++|+.|+|||||++++.+.+.  .+..|....+.       +     .+.||||.    ..|....-..-.+||+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999988654  33434333222       1     24599994    222222222345899999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      ++.|.+++.+
T Consensus        69 ll~dat~~~~   78 (143)
T PF10662_consen   69 LLQDATEPRS   78 (143)
T ss_pred             EEecCCCCCc
Confidence            9999998764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PLN03126 Elongation factor Tu; Provisional

Probab=98.90  E-value=7.2e-09  Score=84.38  Aligned_cols=88  Identities=17%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCC------CCC--------CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQK------FMP--------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF  148 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~------~~~--------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~  148 (173)
                      ....++++++|..++|||||++++++..      ...        ..+...|.+.......+......+.++|+||+++|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            3456899999999999999999999521      111        01122344443333334344557789999999988


Q ss_pred             ccchhhhhcCCCEEEEEEeCCC
Q psy13826        149 RAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       149 ~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      -......+..+|++++|+|.++
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~  179 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGAD  179 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCC
Confidence            7655566778999999999874

>PRK12736 elongation factor Tu; Reviewed

Probab=98.90  E-value=6.5e-09  Score=83.02  Aligned_cols=87  Identities=18%  Similarity=0.187  Sum_probs=60.4

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCC------------CC--CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKF------------MP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR  149 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~------------~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~  149 (173)
                      ...++|+++|..++|||||+.++++...            .+  ..+...|.+.......+......+.+|||||+++|.
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence            3468999999999999999999986311            00  001123444444444454455577899999998886


Q ss_pred             cchhhhhcCCCEEEEEEeCCC
Q psy13826        150 AVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       150 ~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .........+|++++|+|.++
T Consensus        90 ~~~~~~~~~~d~~llVvd~~~  110 (394)
T PRK12736         90 KNMITGAAQMDGAILVVAATD  110 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCC
Confidence            544455678999999999875

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.88  E-value=1.4e-08  Score=76.18  Aligned_cols=88  Identities=24%  Similarity=0.329  Sum_probs=54.7

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCC--CCC-ceeeeeEEEEEEECCeEEEEEEEeCCCccccc--c-c-
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD--CPH-TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--A-V-  151 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--~-~-  151 (173)
                      ..+.....++|+++|.+|||||||+|.+++......  ..+ |.....  .....++  ..+.+|||||-....  . . 
T Consensus        24 ~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~--~~~~~~g--~~i~vIDTPGl~~~~~~~~~~   99 (249)
T cd01853          24 GKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVRE--VSGTVDG--FKLNIIDTPGLLESVMDQRVN   99 (249)
T ss_pred             hhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEE--EEEEECC--eEEEEEECCCcCcchhhHHHH
Confidence            345666789999999999999999999998764321  222 222111  1222333  567899999965431  0 1 


Q ss_pred             ------hhhhhc--CCCEEEEEEeCCC
Q psy13826        152 ------TRSYYR--GAAGALMVIDVSH  170 (173)
Q Consensus       152 ------~~~~~~--~~~~~ilv~d~t~  170 (173)
                            ...++.  ..+++++|..++.
T Consensus       100 ~~~~~~I~~~l~~~~idvIL~V~rlD~  126 (249)
T cd01853         100 RKILSSIKRYLKKKTPDVVLYVDRLDM  126 (249)
T ss_pred             HHHHHHHHHHHhccCCCEEEEEEcCCC
Confidence                  122332  5788888865543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0077|consensus

Probab=98.88  E-value=1.9e-09  Score=74.45  Aligned_cols=85  Identities=18%  Similarity=0.334  Sum_probs=66.4

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      +.+.-|++++|-.|+|||||++.+.++.. ..+.||.-.+.  ..+.+  ..+.++.+|.+|+..-+..|..|+..+|++
T Consensus        17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTS--E~l~I--g~m~ftt~DLGGH~qArr~wkdyf~~v~~i   91 (193)
T KOG0077|consen   17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTS--EELSI--GGMTFTTFDLGGHLQARRVWKDYFPQVDAI   91 (193)
T ss_pred             hccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCCh--HHhee--cCceEEEEccccHHHHHHHHHHHHhhhcee
Confidence            34456999999999999999999988764 34555543222  12233  455678899999998899999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      ++.+|+-|++
T Consensus        92 v~lvda~d~e  101 (193)
T KOG0077|consen   92 VYLVDAYDQE  101 (193)
T ss_pred             EeeeehhhHH
Confidence            9999998875

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.88  E-value=1.1e-08  Score=81.45  Aligned_cols=81  Identities=19%  Similarity=0.165  Sum_probs=51.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc----cchh---hhhcC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----AVTR---SYYRG  158 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----~~~~---~~~~~  158 (173)
                      ..|+|+|.||||||||++++++..... .++.|... ...-.+...+ ...+.++|+||...-.    .+..   ..+..
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~-p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r  237 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLV-PNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER  237 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccC-cEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence            478999999999999999999765322 22222211 1122233332 2357899999974311    1111   24788


Q ss_pred             CCEEEEEEeCC
Q psy13826        159 AAGALMVIDVS  169 (173)
Q Consensus       159 ~~~~ilv~d~t  169 (173)
                      ++++++|+|++
T Consensus       238 advlL~VVD~s  248 (390)
T PRK12298        238 CRVLLHLIDIA  248 (390)
T ss_pred             CCEEEEEeccC
Confidence            99999999998

>KOG0098|consensus

Probab=98.87  E-value=1.7e-09  Score=76.07  Aligned_cols=41  Identities=54%  Similarity=0.930  Sum_probs=37.6

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +++.+|++++||.|||||||+.||+.+.|...+..|+|..+
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvef   43 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEF   43 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeee
Confidence            56889999999999999999999999999999999977655

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.86  E-value=5.9e-09  Score=83.57  Aligned_cols=86  Identities=19%  Similarity=0.169  Sum_probs=57.9

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCC------ceeeeeEE----------------EEEEECC------eEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH------TIGVEFGT----------------RIIEVHG------EKI  135 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~------t~~~~~~~----------------~~~~~~~------~~~  135 (173)
                      +..++|+++|..++|||||+.++.+.. ...+..      |+...+..                .....++      ...
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~-~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVW-TDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCee-cccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            356899999999999999999996532 211111      11111100                0000011      135


Q ss_pred             EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .+.+||+||+++|...+......+|++++|+|+++
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~  115 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANE  115 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence            78999999999998777777788999999999986

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>CHL00071 tufA elongation factor Tu

Probab=98.86  E-value=1.7e-08  Score=81.04  Aligned_cols=88  Identities=17%  Similarity=0.154  Sum_probs=60.5

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCC--------------CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP--------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF  148 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~  148 (173)
                      ....++++++|.+++|||||++++++..-..              ..+...|.+.......+......+.+.||||+.+|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            3456899999999999999999999641100              00111333333333344444456778899999887


Q ss_pred             ccchhhhhcCCCEEEEEEeCCC
Q psy13826        149 RAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       149 ~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .......+..+|++++|+|.+.
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~  110 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAAD  110 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCC
Confidence            6555566788999999999875

>KOG1191|consensus

Probab=98.85  E-value=7.9e-09  Score=82.42  Aligned_cols=86  Identities=22%  Similarity=0.231  Sum_probs=56.5

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc-cccc--------h
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRAV--------T  152 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-~~~~--------~  152 (173)
                      .-+..++|+++|+||||||||+|.|.+.+..- -.|..|.+.+.....++-..+.+.+.||+|..+ -...        .
T Consensus       264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsI-VSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA  342 (531)
T KOG1191|consen  264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSI-VSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERA  342 (531)
T ss_pred             HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceE-eCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHH
Confidence            34456999999999999999999999886432 122233333333333333444566779999644 1111        1


Q ss_pred             hhhhcCCCEEEEEEeC
Q psy13826        153 RSYYRGAAGALMVIDV  168 (173)
Q Consensus       153 ~~~~~~~~~~ilv~d~  168 (173)
                      ..-++.||++++|+|.
T Consensus       343 ~k~~~~advi~~vvda  358 (531)
T KOG1191|consen  343 RKRIERADVILLVVDA  358 (531)
T ss_pred             HHHHhhcCEEEEEecc
Confidence            3356789999999998

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.84  E-value=7.7e-09  Score=71.05  Aligned_cols=54  Identities=22%  Similarity=0.267  Sum_probs=40.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~  145 (173)
                      +++++|.+|||||||+|++.+.+... .....|.+.....+.+++   .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999887642 333344444455555654   4789999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0079|consensus

Probab=98.84  E-value=7e-10  Score=75.22  Aligned_cols=90  Identities=26%  Similarity=0.332  Sum_probs=61.0

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhhh--hccccCCCCCcceeeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALV--SKMSSSGQYSYSYIFK   88 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~~--~~~~~~~~~~~~~~~k   88 (173)
                      .++..+|++++||+|||||+|+.||..+.|..+|..|+|..+.-......+...+.-+|+..  ..+...-...++..--
T Consensus         4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg   83 (198)
T KOG0079|consen    4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG   83 (198)
T ss_pred             cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence            46788999999999999999999999999999999999887765555554544444333321  1111112223344556


Q ss_pred             EEEEeCCCCChH
Q psy13826         89 YIIIGDMGVGKS  100 (173)
Q Consensus        89 i~l~G~~~vGKs  100 (173)
                      ++++-+---|-|
T Consensus        84 v~vVYDVTn~ES   95 (198)
T KOG0079|consen   84 VIVVYDVTNGES   95 (198)
T ss_pred             EEEEEECcchhh
Confidence            677777666654

>cd01859 MJ1464 MJ1464

Probab=98.83  E-value=2.3e-08  Score=69.74  Aligned_cols=81  Identities=20%  Similarity=0.262  Sum_probs=53.5

Q ss_pred             EeeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeE
Q psy13826         55 LVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK  134 (173)
Q Consensus        55 ~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~  134 (173)
                      .+++..+.+...+...+...++.     .....+++++|.++|||||+++++.+.. ...+.++.|.+.....+..+.  
T Consensus        75 ~iSa~~~~gi~~L~~~l~~~~~~-----~~~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~--  146 (156)
T cd01859          75 YVSAKERLGTKILRRTIKELAKI-----DGKEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS--  146 (156)
T ss_pred             EEEccccccHHHHHHHHHHHHhh-----cCCCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC--
Confidence            34555555566665555444331     2245788999999999999999999654 344566777654433333333  


Q ss_pred             EEEEEEeCCC
Q psy13826        135 IKLQIWDTAG  144 (173)
Q Consensus       135 ~~l~i~D~~g  144 (173)
                       .+.+|||||
T Consensus       147 -~~~~~DtpG  155 (156)
T cd01859         147 -KIYLLDTPG  155 (156)
T ss_pred             -CEEEEECcC
Confidence             588999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.81  E-value=1.1e-08  Score=81.98  Aligned_cols=88  Identities=20%  Similarity=0.245  Sum_probs=55.3

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCC------CceeeeeEEEEE------------E----EC--C----eE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP------HTIGVEFGTRII------------E----VH--G----EK  134 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~------~t~~~~~~~~~~------------~----~~--~----~~  134 (173)
                      ....++|+++|..++|||||+.++.+. +.+.+.      -|+...+....+            .    .+  +    ..
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            345689999999999999999998653 211111      122211110000            0    00  0    13


Q ss_pred             EEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       135 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      ..+.+|||||+++|..........+|++++|+|++++
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~  121 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEP  121 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            5789999999988764333344567999999999864

>KOG0086|consensus

Probab=98.80  E-value=2.6e-09  Score=72.91  Aligned_cols=45  Identities=42%  Similarity=0.718  Sum_probs=39.7

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      .||+.+|++++|++|.|||||++||..++|.+...-|+|..+-..
T Consensus         5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSr   49 (214)
T KOG0086|consen    5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSR   49 (214)
T ss_pred             hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecce
Confidence            478999999999999999999999999999998888888655333

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.80  E-value=2.7e-08  Score=81.20  Aligned_cols=87  Identities=20%  Similarity=0.241  Sum_probs=58.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCC------------CC-------------------ceeeeeEEEEEEECC
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC------------PH-------------------TIGVEFGTRIIEVHG  132 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~------------~~-------------------t~~~~~~~~~~~~~~  132 (173)
                      ...++|+++|..++|||||+.+++...-....            ..                   ..|.+.......+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            45699999999999999999999854311000            00                   112222222223334


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      ....+.+|||||++.|.......+..+|++++|+|.+.
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~  142 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARK  142 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            45578899999999886544445689999999999864

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=98.79  E-value=1.1e-08  Score=73.28  Aligned_cols=41  Identities=24%  Similarity=0.276  Sum_probs=36.7

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ...+||+++|++|||||||+.||+.+.|..++.||++..+.
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~   43 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT   43 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE
Confidence            45689999999999999999999999999999999876553

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0088|consensus

Probab=98.78  E-value=2.9e-09  Score=73.08  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=39.6

Q ss_pred             CCCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826          9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus         9 ~~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ..+..+.||+|++|+..||||||+.||+.++|+...-+|....+.
T Consensus         7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~   51 (218)
T KOG0088|consen    7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQ   51 (218)
T ss_pred             ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHh
Confidence            446788999999999999999999999999999999888765553

>PRK00049 elongation factor Tu; Reviewed

Probab=98.77  E-value=4e-08  Score=78.56  Aligned_cols=87  Identities=18%  Similarity=0.174  Sum_probs=60.8

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCC------------C--CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM------------P--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR  149 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~------------~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~  149 (173)
                      ...++|+++|..++|||||+.++++....            +  ..+-..|.+.......+......+.+.||||+.+|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            45789999999999999999999873100            0  001123444444444444444567788999998876


Q ss_pred             cchhhhhcCCCEEEEEEeCCC
Q psy13826        150 AVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       150 ~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      ......+..+|++++|+|.+.
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~  110 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAAD  110 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCC
Confidence            555556789999999999875

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.77  E-value=2.5e-08  Score=80.00  Aligned_cols=84  Identities=18%  Similarity=0.249  Sum_probs=56.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCC-------------------------------CCceeeeeEEEEEEECCeEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDC-------------------------------PHTIGVEFGTRIIEVHGEKI  135 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~-------------------------------~~t~~~~~~~~~~~~~~~~~  135 (173)
                      ++++++|..++|||||+.+++...-....                               +...|.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            48999999999999999999743211000                               00112222222223333445


Q ss_pred             EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .+.+|||||+++|.......+..+|++|+|+|...
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~  115 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARK  115 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            78899999999886555556789999999999864

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PTZ00258 GTP-binding protein; Provisional

Probab=98.76  E-value=4.9e-08  Score=77.35  Aligned_cols=86  Identities=22%  Similarity=0.215  Sum_probs=54.0

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCe---------------EEEEEEEeCCCcccc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERF  148 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~  148 (173)
                      ...++|.++|.||||||||++++.+........|....+.....+.+.+.               ..++++.|+||...-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            45679999999999999999999776543221122211222223333322               234789999995421


Q ss_pred             ----ccchhh---hhcCCCEEEEEEeCC
Q psy13826        149 ----RAVTRS---YYRGAAGALMVIDVS  169 (173)
Q Consensus       149 ----~~~~~~---~~~~~~~~ilv~d~t  169 (173)
                          ..+...   .++.+|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                112222   467899999999974

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.76  E-value=1.9e-08  Score=73.81  Aligned_cols=79  Identities=23%  Similarity=0.313  Sum_probs=47.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCC----CCceeeeeEEEEEEECCeEEEEEEEeCCCccccc--------cchh-
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDC----PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------AVTR-  153 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~~-  153 (173)
                      ++|+++|..|+||||++|.+++.+.....    +.|..  .......+++..  +.++||||-....        .+.. 
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~--~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~   76 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQE--CQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRC   76 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS---EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccc--cceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHH
Confidence            48999999999999999999988754332    11222  222233556654  6788999942211        1111 


Q ss_pred             --hhhcCCCEEEEEEeCC
Q psy13826        154 --SYYRGAAGALMVIDVS  169 (173)
Q Consensus       154 --~~~~~~~~~ilv~d~t  169 (173)
                        ......+++|||+.+.
T Consensus        77 l~~~~~g~ha~llVi~~~   94 (212)
T PF04548_consen   77 LSLCSPGPHAFLLVIPLG   94 (212)
T ss_dssp             HHHTTT-ESEEEEEEETT
T ss_pred             HHhccCCCeEEEEEEecC
Confidence              1235689999999876

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01856 YlqF YlqF

Probab=98.76  E-value=4.4e-08  Score=69.44  Aligned_cols=87  Identities=22%  Similarity=0.270  Sum_probs=53.9

Q ss_pred             EeeccCcccchhhhhhhhhcccc----CCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEE
Q psy13826         55 LVSTSQPITRKNLLWALVSKMSS----SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV  130 (173)
Q Consensus        55 ~~s~~~~~~~k~l~~~~~~~~~~----~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~  130 (173)
                      .++...+.....+.......+..    .........++++++|.+|||||||++++.+..+. ...+..+.+.....+.+
T Consensus        80 ~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~  158 (171)
T cd01856          80 FVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKI  158 (171)
T ss_pred             EEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEe
Confidence            34555555555555555443210    01112234579999999999999999999987764 23333444454444455


Q ss_pred             CCeEEEEEEEeCCCc
Q psy13826        131 HGEKIKLQIWDTAGQ  145 (173)
Q Consensus       131 ~~~~~~l~i~D~~g~  145 (173)
                      +   ..+.+|||||.
T Consensus       159 ~---~~~~~iDtpG~  170 (171)
T cd01856         159 S---PGIYLLDTPGI  170 (171)
T ss_pred             c---CCEEEEECCCC
Confidence            4   35789999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.75  E-value=1.9e-08  Score=74.72  Aligned_cols=42  Identities=19%  Similarity=0.208  Sum_probs=37.5

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ....+||++||++|||||||+.||+.+.|..+|.||++..+.
T Consensus        10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~   51 (232)
T cd04174          10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT   51 (232)
T ss_pred             ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE
Confidence            357789999999999999999999999999999999876553

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.74  E-value=3.7e-08  Score=83.14  Aligned_cols=87  Identities=21%  Similarity=0.231  Sum_probs=57.3

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCC------------CCCc-------------------eeeeeEEEEEEECC
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD------------CPHT-------------------IGVEFGTRIIEVHG  132 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~------------~~~t-------------------~~~~~~~~~~~~~~  132 (173)
                      ...++|+++|.+++|||||+++++...-...            ...+                   .|.+.......+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            3457899999999999999999996432110            0000                   11112222222333


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      ....+.++||||++.|.......+..+|++++|+|.+.
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~  139 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARK  139 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            34467799999998886544456789999999999864

>cd01900 YchF YchF subfamily

Probab=98.74  E-value=3.5e-08  Score=74.86  Aligned_cols=81  Identities=21%  Similarity=0.171  Sum_probs=50.5

Q ss_pred             EEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCe---------------EEEEEEEeCCCcccc----c
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERF----R  149 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~----~  149 (173)
                      +.++|.||||||||++++.+........|....+.....+.+.+.               ...+++.|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            478999999999999999987653222222211222223333332               135889999995321    1


Q ss_pred             cchhh---hhcCCCEEEEEEeCC
Q psy13826        150 AVTRS---YYRGAAGALMVIDVS  169 (173)
Q Consensus       150 ~~~~~---~~~~~~~~ilv~d~t  169 (173)
                      .+...   .++.+|+++.|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            22223   357899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd04128 Spg1 Spg1p

Probab=98.74  E-value=1.1e-08  Score=73.27  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=34.1

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +|++++|++|||||||++||+.++|..++.+|++..+
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~   37 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNF   37 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE
Confidence            4999999999999999999999999999999987654

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04121 Rab40 Rab40 subfamily

Probab=98.73  E-value=1.5e-08  Score=73.06  Aligned_cols=41  Identities=22%  Similarity=0.436  Sum_probs=36.2

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +++.+||+++|+.|||||||+.||..+.|...+.+|++..+
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~   43 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDY   43 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEE
Confidence            56779999999999999999999999999988888876544

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PRK12739 elongation factor G; Reviewed

Probab=98.72  E-value=2.9e-08  Score=84.51  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=59.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCC-------C------CCC---CceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM-------P------DCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER  147 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~-------~------~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~  147 (173)
                      +...+|+++|..++|||||+++++...-.       .      ++.   ...|.+.......+......+.++||||+..
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            35678999999999999999999752100       0      000   0112222222222322445678999999988


Q ss_pred             cccchhhhhcCCCEEEEEEeCCC
Q psy13826        148 FRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       148 ~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      |...+...++.+|++|+|+|.++
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~  108 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVS  108 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCC
Confidence            87777788999999999999875

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.72  E-value=1.2e-07  Score=74.51  Aligned_cols=81  Identities=22%  Similarity=0.290  Sum_probs=52.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCC-ceeeeeEEEEEEECCeE---------------EEEEEEeCCCcccc-
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPH-TIGVEFGTRIIEVHGEK---------------IKLQIWDTAGQERF-  148 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~---------------~~l~i~D~~g~~~~-  148 (173)
                      +++.++|.||||||||++++.+..... +++. |+...  ...+.+.+..               ..+++.|+||...- 
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~--~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPN--VGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccce--EEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            689999999999999999999876322 2222 22221  2222332211               25889999995421 


Q ss_pred             ---ccchhh---hhcCCCEEEEEEeCC
Q psy13826        149 ---RAVTRS---YYRGAAGALMVIDVS  169 (173)
Q Consensus       149 ---~~~~~~---~~~~~~~~ilv~d~t  169 (173)
                         ..+...   .++.+|++++|+|..
T Consensus        81 ~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               122222   367899999999985

>cd04131 Rnd Rnd subfamily

Probab=98.71  E-value=2.3e-08  Score=71.40  Aligned_cols=38  Identities=26%  Similarity=0.312  Sum_probs=34.5

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      +||+++|++|||||||+.||+.+.|...+.||++..+.
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~   39 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT   39 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE
Confidence            69999999999999999999999999999999865543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04133 Rop_like Rop subfamily

Probab=98.71  E-value=2.3e-08  Score=71.32  Aligned_cols=38  Identities=29%  Similarity=0.371  Sum_probs=34.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      +|++++|++|||||||+.||+.+.|..++.+|++..+.
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~   39 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS   39 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE
Confidence            69999999999999999999999999999999876553

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.70  E-value=6.8e-08  Score=73.71  Aligned_cols=84  Identities=26%  Similarity=0.234  Sum_probs=56.5

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCC-CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhhhc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------AVTRSYYR  157 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-------~~~~~~~~  157 (173)
                      ...++++|.|+||||||++.+.+.+.... |+-|. .+.-...+.+  +..++|+.|+||.-.-.       ...-...|
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTT-l~~VPG~l~Y--~ga~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTT-LEPVPGMLEY--KGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCcee-cccccceEee--cCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            56899999999999999999998764332 33222 1222333344  45578899999842211       11223578


Q ss_pred             CCCEEEEEEeCCCCC
Q psy13826        158 GAAGALMVIDVSHVK  172 (173)
Q Consensus       158 ~~~~~ilv~d~t~~~  172 (173)
                      .||.+++|.|+....
T Consensus       140 ~ADlIiiVld~~~~~  154 (365)
T COG1163         140 NADLIIIVLDVFEDP  154 (365)
T ss_pred             cCCEEEEEEecCCCh
Confidence            999999999998654

>cd01892 Miro2 Miro2 subfamily

Probab=98.69  E-value=2.3e-08  Score=70.63  Aligned_cols=39  Identities=26%  Similarity=0.378  Sum_probs=35.0

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccc-cCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF-LGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~-~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||++||+.+.|. .++.+|.+..+
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~   42 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRY   42 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcce
Confidence            4689999999999999999999999998 88999977544

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01875 RhoG RhoG subfamily

Probab=98.68  E-value=3.4e-08  Score=71.24  Aligned_cols=38  Identities=29%  Similarity=0.368  Sum_probs=34.9

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      +||+++|++|||||||+.||+.+.|...+.||++..+.
T Consensus         4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~   41 (191)
T cd01875           4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS   41 (191)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE
Confidence            69999999999999999999999999999999876553

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG1707|consensus

Probab=98.68  E-value=8.2e-08  Score=78.05  Aligned_cols=94  Identities=19%  Similarity=0.280  Sum_probs=72.6

Q ss_pred             CCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q psy13826         78 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR  157 (173)
Q Consensus        78 ~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~  157 (173)
                      ..+......+++.++|+.++|||.+++.|+++.+...+..+....+....+...++.--+.+-|.+-. ....+...- .
T Consensus       417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~  494 (625)
T KOG1707|consen  417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A  494 (625)
T ss_pred             ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence            34556678999999999999999999999999888766666666666666777677777778787754 333333333 7


Q ss_pred             CCCEEEEEEeCCCCCC
Q psy13826        158 GAAGALMVIDVSHVKE  173 (173)
Q Consensus       158 ~~~~~ilv~d~t~~~S  173 (173)
                      .||+++++||++|+.|
T Consensus       495 ~cDv~~~~YDsS~p~s  510 (625)
T KOG1707|consen  495 ACDVACLVYDSSNPRS  510 (625)
T ss_pred             eeeeEEEecccCCchH
Confidence            7999999999999875

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.67  E-value=1.2e-07  Score=78.63  Aligned_cols=85  Identities=19%  Similarity=0.290  Sum_probs=58.3

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc------ccchhhhh--c
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF------RAVTRSYY--R  157 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~------~~~~~~~~--~  157 (173)
                      ..+++++|.||||||||.|++++....-..-|.+.++.....+...+..  +++.|.||--..      +.+.+.|+  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            3569999999999999999999876433223334444444455555554  678899995332      23334444  3


Q ss_pred             CCCEEEEEEeCCCCC
Q psy13826        158 GAAGALMVIDVSHVK  172 (173)
Q Consensus       158 ~~~~~ilv~d~t~~~  172 (173)
                      +.|++|-|.|.+|.|
T Consensus        81 ~~D~ivnVvDAtnLe   95 (653)
T COG0370          81 KPDLIVNVVDATNLE   95 (653)
T ss_pred             CCCEEEEEcccchHH
Confidence            579999999999976

>cd01874 Cdc42 Cdc42 subfamily

Probab=98.66  E-value=3.8e-08  Score=69.98  Aligned_cols=38  Identities=32%  Similarity=0.433  Sum_probs=34.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      +||+++|++|||||||+.||+.+.|..++.||++..+.
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~   39 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA   39 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE
Confidence            69999999999999999999999999999999876554

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG0081|consensus

Probab=98.64  E-value=2e-09  Score=73.84  Aligned_cols=47  Identities=34%  Similarity=0.573  Sum_probs=40.2

Q ss_pred             CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce--eEEEEe
Q psy13826         10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY--VCLRLV   56 (173)
Q Consensus        10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~--~~~~~~   56 (173)
                      ..||+.+|.+.+||+||||||+++||++++|...+.+|+|-  ...+.+
T Consensus         4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvv   52 (219)
T KOG0081|consen    4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVV   52 (219)
T ss_pred             ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEE
Confidence            46889999999999999999999999999999999999654  434443

>cd01855 YqeH YqeH

Probab=98.64  E-value=1.2e-07  Score=68.22  Aligned_cols=78  Identities=18%  Similarity=0.206  Sum_probs=49.6

Q ss_pred             eeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCC-------CCCCceeeeeEEEEE
Q psy13826         56 VSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-------DCPHTIGVEFGTRII  128 (173)
Q Consensus        56 ~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~-------~~~~t~~~~~~~~~~  128 (173)
                      +++..+.+...++..+...++        ...+++++|.+|||||||+|.+.+.....       ...+..|.+.....+
T Consensus       105 vSA~~~~gi~eL~~~l~~~l~--------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~  176 (190)
T cd01855         105 ISAKKGWGVEELINAIKKLAK--------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKI  176 (190)
T ss_pred             EECCCCCCHHHHHHHHHHHhh--------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEE
Confidence            455555555565555544332        23579999999999999999999864311       122233444445455


Q ss_pred             EECCeEEEEEEEeCCC
Q psy13826        129 EVHGEKIKLQIWDTAG  144 (173)
Q Consensus       129 ~~~~~~~~l~i~D~~g  144 (173)
                      .++.   .+.++||||
T Consensus       177 ~~~~---~~~~~DtPG  189 (190)
T cd01855         177 PLGN---GKKLYDTPG  189 (190)
T ss_pred             ecCC---CCEEEeCcC
Confidence            5543   468999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PLN03110 Rab GTPase; Provisional

Probab=98.64  E-value=5.4e-08  Score=71.56  Aligned_cols=42  Identities=40%  Similarity=0.716  Sum_probs=36.8

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+++.+||+++|++|||||+|+++|..+.|...+.+|++..+
T Consensus         8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~   49 (216)
T PLN03110          8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEF   49 (216)
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEE
Confidence            356789999999999999999999999999888888877544

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=98.63  E-value=4.8e-08  Score=72.13  Aligned_cols=37  Identities=27%  Similarity=0.334  Sum_probs=34.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||++||++|||||||+.+|..+.|...|.||++..+
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~   38 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY   38 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce
Confidence            6999999999999999999999999999999987655

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.62  E-value=4.2e-08  Score=69.42  Aligned_cols=36  Identities=31%  Similarity=0.598  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ||+++|++|||||+|++||+.+.|..+|.+|++..+
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~   37 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDF   37 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEE
Confidence            899999999999999999999999999999977554

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04127 Rab27A Rab27a subfamily

Probab=98.62  E-value=6.4e-08  Score=68.74  Aligned_cols=40  Identities=33%  Similarity=0.595  Sum_probs=35.8

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ++.+||+++|++|||||||+++|..+.|...+.+|++..+
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~   41 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDF   41 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEE
Confidence            4568999999999999999999999999999999977544

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.61  E-value=1.9e-07  Score=69.05  Aligned_cols=82  Identities=22%  Similarity=0.284  Sum_probs=52.4

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCC-----------------------ceeeeeEE---------------EEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-----------------------TIGVEFGT---------------RIIE  129 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~-----------------------t~~~~~~~---------------~~~~  129 (173)
                      |++++|+.++|||||+.+|..+.|......                       ..|.+..-               ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999998766431110                       01111000               0111


Q ss_pred             ECCeEEEEEEEeCCCccccccchhhhh--cCCCEEEEEEeCCCC
Q psy13826        130 VHGEKIKLQIWDTAGQERFRAVTRSYY--RGAAGALMVIDVSHV  171 (173)
Q Consensus       130 ~~~~~~~l~i~D~~g~~~~~~~~~~~~--~~~~~~ilv~d~t~~  171 (173)
                      .  ....+.+.|+||+++|.......+  +.+|++++|+|....
T Consensus        81 ~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g  122 (224)
T cd04165          81 K--SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG  122 (224)
T ss_pred             e--CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC
Confidence            1  123577889999998864433334  368999999998653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.60  E-value=2.5e-07  Score=75.04  Aligned_cols=86  Identities=17%  Similarity=0.191  Sum_probs=62.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC--C------------------------CCC---CCceeeeeEEEEEEECCeEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--M------------------------PDC---PHTIGVEFGTRIIEVHGEKI  135 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~------------------------~~~---~~t~~~~~~~~~~~~~~~~~  135 (173)
                      ..++++++|..++|||||+-+++...-  .                        .+.   +...|.+.......+.....
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~   85 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY   85 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence            458899999999999999998874210  0                        000   01123333333444555666


Q ss_pred             EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .+.+.|+||+++|.......++.+|++|+|+|+++
T Consensus        86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~  120 (447)
T PLN00043         86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT  120 (447)
T ss_pred             EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence            78899999999998877888899999999999986

>cd04110 Rab35 Rab35 subfamily

Probab=98.60  E-value=5.3e-08  Score=70.63  Aligned_cols=41  Identities=39%  Similarity=0.583  Sum_probs=36.0

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ++..+||+++|++|||||||+++|..+.|...+.+|++..+
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~   43 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF   43 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCcccccee
Confidence            45678999999999999999999999999988888977543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.60  E-value=7.6e-08  Score=68.21  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=34.6

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      .+||+++|++|||||||+.||..++|...+.+|.+..+.
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~   40 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK   40 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE
Confidence            369999999999999999999999999888899875543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=98.60  E-value=4e-08  Score=71.56  Aligned_cols=37  Identities=27%  Similarity=0.443  Sum_probs=33.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||||+++|+.+.|..++.+|++..+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~   37 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSV   37 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeE
Confidence            4899999999999999999999999999999987543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.60  E-value=5.1e-08  Score=68.55  Aligned_cols=39  Identities=44%  Similarity=0.760  Sum_probs=35.0

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +.+||+++|++|||||+|+++|..+.|...+.+|.+..+
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~   40 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDF   40 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceE
Confidence            568999999999999999999999999999888876543

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04122 Rab14 Rab14 subfamily

Probab=98.60  E-value=5e-08  Score=68.49  Aligned_cols=38  Identities=66%  Similarity=1.021  Sum_probs=34.1

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|++|||||||+++|..++|...+.+|.+..+
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~   39 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF   39 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeE
Confidence            47999999999999999999999999999888876544

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PLN03127 Elongation factor Tu; Provisional

Probab=98.60  E-value=2.7e-07  Score=74.77  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=59.7

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhC------CCC------CC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQ------KFM------PD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER  147 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~------~~~------~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~  147 (173)
                      .....++|+++|..++|||||++++.+.      ...      +.  .+...|.+.......+......+.+.||||+++
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence            3445689999999999999999999621      100      00  011123334344444544555778899999988


Q ss_pred             cccchhhhhcCCCEEEEEEeCCC
Q psy13826        148 FRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       148 ~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      |-.........+|++++|+|.++
T Consensus       137 f~~~~~~g~~~aD~allVVda~~  159 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPD  159 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCC
Confidence            76444445567999999999865

>cd01858 NGP_1 NGP-1

Probab=98.60  E-value=3.1e-07  Score=64.11  Aligned_cols=82  Identities=20%  Similarity=0.195  Sum_probs=47.8

Q ss_pred             eeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEE
Q psy13826         56 VSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI  135 (173)
Q Consensus        56 ~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~  135 (173)
                      ++...+.+...++..+.......   .....++++++|.+|||||||+|++.+..... ..++.|.+.....+..+.   
T Consensus        75 iSa~~~~~~~~L~~~l~~~~~~~---~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---  147 (157)
T cd01858          75 ASINNPFGKGSLIQLLRQFSKLH---SDKKQISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---  147 (157)
T ss_pred             eeccccccHHHHHHHHHHHHhhh---ccccceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---
Confidence            34444455555555443332211   11235789999999999999999999865322 223344433333333332   


Q ss_pred             EEEEEeCCC
Q psy13826        136 KLQIWDTAG  144 (173)
Q Consensus       136 ~l~i~D~~g  144 (173)
                      .+.+.||||
T Consensus       148 ~~~liDtPG  156 (157)
T cd01858         148 RIYLIDCPG  156 (157)
T ss_pred             CEEEEECcC
Confidence            256889998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.59  E-value=3e-07  Score=74.60  Aligned_cols=87  Identities=17%  Similarity=0.193  Sum_probs=61.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCC--CC------------------------CCCC---CceeeeeEEEEEEECCeE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FM------------------------PDCP---HTIGVEFGTRIIEVHGEK  134 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~--~~------------------------~~~~---~t~~~~~~~~~~~~~~~~  134 (173)
                      ...++++++|..++|||||+.+++...  ..                        .+..   -..|.+.......+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            345799999999999999999998521  00                        0000   112333333344455556


Q ss_pred             EEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       135 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      ..+.|.|+||+++|.......+..+|++|+|+|.++
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~  120 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTA  120 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCC
Confidence            678899999999997666667889999999999875

>cd04120 Rab12 Rab12 subfamily

Probab=98.59  E-value=5.1e-08  Score=71.02  Aligned_cols=37  Identities=30%  Similarity=0.504  Sum_probs=33.1

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +.|+++|++|||||||+.||+.+.|..++.+|++..+
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~   37 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDF   37 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEE
Confidence            3689999999999999999999999999999976544

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.58  E-value=9.6e-08  Score=66.26  Aligned_cols=37  Identities=27%  Similarity=0.438  Sum_probs=33.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||||+++|+.++|...+.+|.+..+
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~   38 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY   38 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE
Confidence            6999999999999999999999999988888876544

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.58  E-value=3.1e-07  Score=70.25  Aligned_cols=84  Identities=19%  Similarity=0.135  Sum_probs=53.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--cccc-------hhhh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--FRAV-------TRSY  155 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--~~~~-------~~~~  155 (173)
                      ....+++-|.||||||||++.+.+.+......|...-.++...+  ..+...+|+.||||.-.  ....       ....
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF--ERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee--ecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            56789999999999999999999887544333322112222222  33444678889999421  1111       1112


Q ss_pred             hcCCCEEEEEEeCCC
Q psy13826        156 YRGAAGALMVIDVSH  170 (173)
Q Consensus       156 ~~~~~~~ilv~d~t~  170 (173)
                      -.-+++++++||.+.
T Consensus       245 ~hl~~~IlF~~D~Se  259 (346)
T COG1084         245 RHLAGVILFLFDPSE  259 (346)
T ss_pred             HHhcCeEEEEEcCcc
Confidence            233789999999874

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.58  E-value=9.1e-08  Score=70.54  Aligned_cols=41  Identities=22%  Similarity=0.299  Sum_probs=36.7

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ...+||+++|++|||||+|+.||+.+.|...+.+|++..+.
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~   51 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH   51 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE
Confidence            56789999999999999999999999999999999876543

>KOG0091|consensus

Probab=98.57  E-value=1.7e-08  Score=69.71  Aligned_cols=41  Identities=41%  Similarity=0.541  Sum_probs=37.5

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +-|.++++++||+.||||||+++|+.++|.+-..||+|..+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdf   45 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDF   45 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHH
Confidence            56788999999999999999999999999999999988654

>PRK00007 elongation factor G; Reviewed

Probab=98.56  E-value=1.9e-07  Score=79.66  Aligned_cols=87  Identities=16%  Similarity=0.167  Sum_probs=57.9

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhC--CCCC--CCC------------CceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMP--DCP------------HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER  147 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~--~~~~--~~~------------~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~  147 (173)
                      +...+|+++|.+++|||||+++++..  ....  ...            ...|.+.......+..+...+.+.||||+..
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~   87 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD   87 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence            34679999999999999999999741  1100  000            1222333222223322345678889999988


Q ss_pred             cccchhhhhcCCCEEEEEEeCCC
Q psy13826        148 FRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       148 ~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      |.......++.+|++|+|+|.+.
T Consensus        88 f~~ev~~al~~~D~~vlVvda~~  110 (693)
T PRK00007         88 FTIEVERSLRVLDGAVAVFDAVG  110 (693)
T ss_pred             HHHHHHHHHHHcCEEEEEEECCC
Confidence            76556667889999999999764

>cd04136 Rap_like Rap-like subfamily

Probab=98.56  E-value=1e-07  Score=66.44  Aligned_cols=37  Identities=30%  Similarity=0.453  Sum_probs=33.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||||++||+.+.|...+.+|.+..+
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~   38 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY   38 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE
Confidence            6999999999999999999999999988888876443

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0097|consensus

Probab=98.56  E-value=5.4e-08  Score=65.64  Aligned_cols=47  Identities=62%  Similarity=0.987  Sum_probs=40.1

Q ss_pred             CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEe
Q psy13826         10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLV   56 (173)
Q Consensus        10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~   56 (173)
                      +++.+.+|.+++||.|||||||+++|...+|-..-+-|++..+-..+
T Consensus         6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtri   52 (215)
T KOG0097|consen    6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI   52 (215)
T ss_pred             cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeE
Confidence            57888999999999999999999999999998887778876553333

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.55  E-value=5.2e-07  Score=68.90  Aligned_cols=60  Identities=27%  Similarity=0.548  Sum_probs=41.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCC----------CCceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC----------PHTIGVEFGTRIIEVHGEKIKLQIWDTAG  144 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g  144 (173)
                      ..++|+++|++|+|||||++.+++.......          ..+.........+.-++..+.|.++||+|
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG   72 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG   72 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence            4689999999999999999999987644331          12333333344445577889999999999

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd04117 Rab15 Rab15 subfamily

Probab=98.55  E-value=7.9e-08  Score=67.29  Aligned_cols=37  Identities=38%  Similarity=0.699  Sum_probs=33.5

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||+|+++|..++|...+.+|++..+
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~   37 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDF   37 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEE
Confidence            4899999999999999999999999998889977544

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.55  E-value=5.6e-07  Score=75.05  Aligned_cols=87  Identities=23%  Similarity=0.366  Sum_probs=55.5

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCC-CCCCC--CCceeeeeEEEEEEECCeEEEEEEEeCCCccccc------
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQK-FMPDC--PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------  149 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~-~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------  149 (173)
                      +.++.+..++|+++|.+||||||++|.+++.. +....  ..|...  .......++  ..+.++||||.....      
T Consensus       111 g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~--~ei~~~idG--~~L~VIDTPGL~dt~~dq~~n  186 (763)
T TIGR00993       111 GQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV--QEIEGLVQG--VKIRVIDTPGLKSSASDQSKN  186 (763)
T ss_pred             hccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE--EEEEEEECC--ceEEEEECCCCCccccchHHH
Confidence            44556677899999999999999999999876 33221  222221  111122333  467899999965431      


Q ss_pred             -cc---hhhhhc--CCCEEEEEEeCC
Q psy13826        150 -AV---TRSYYR--GAAGALMVIDVS  169 (173)
Q Consensus       150 -~~---~~~~~~--~~~~~ilv~d~t  169 (173)
                       .+   ...++.  .+|++|+|..++
T Consensus       187 eeILk~Ik~~Lsk~gpDVVLlV~RLd  212 (763)
T TIGR00993       187 EKILSSVKKFIKKNPPDIVLYVDRLD  212 (763)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEeCC
Confidence             11   122333  489999998875

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.55  E-value=9.8e-08  Score=66.53  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=33.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ||+++|+++||||+|+.+|+.+.|...+.+|.+...
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~   36 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDS   36 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccc
Confidence            899999999999999999999999999999986544

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.54  E-value=8.4e-08  Score=66.95  Aligned_cols=37  Identities=30%  Similarity=0.550  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||||+++++.++|...+.+|++..+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~   37 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDY   37 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeE
Confidence            4899999999999999999999999999999977544

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.54  E-value=8.2e-08  Score=69.69  Aligned_cols=37  Identities=24%  Similarity=0.497  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||||++||+.+.|...+.+|++..+
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~   37 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDF   37 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEE
Confidence            5999999999999999999999999999999987543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.52  E-value=3.7e-07  Score=69.61  Aligned_cols=58  Identities=28%  Similarity=0.407  Sum_probs=41.3

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~  145 (173)
                      ...++++++|.+|||||||+|++.+...... .+..|.+.....+.++.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            3468999999999999999999997653322 22344444444555543   3689999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01871 Rac1_like Rac1-like subfamily

Probab=98.52  E-value=1.5e-07  Score=66.86  Aligned_cols=37  Identities=30%  Similarity=0.399  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +|++++|++|||||+|+.||+.+.|..++.+|++..+
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~   38 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY   38 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee
Confidence            6999999999999999999999999999999976544

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0093|consensus

Probab=98.52  E-value=1.2e-07  Score=64.45  Aligned_cols=46  Identities=24%  Similarity=0.481  Sum_probs=41.3

Q ss_pred             CCCCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826          8 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus         8 ~~~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      .+.++|+.+|++++|++.|||||++.||..+.|...+..|+|..+.
T Consensus        14 ~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFK   59 (193)
T KOG0093|consen   14 IDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK   59 (193)
T ss_pred             ccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEE
Confidence            4567999999999999999999999999999999999999776653

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.51  E-value=4.9e-07  Score=69.31  Aligned_cols=58  Identities=28%  Similarity=0.390  Sum_probs=42.0

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~  145 (173)
                      ...++++++|.+|||||||+|++.+..... ..+..|.+.....+.++.   .+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            456899999999999999999999876422 233445555444555543   3679999996

>KOG3886|consensus

Probab=98.51  E-value=3.9e-08  Score=71.69  Aligned_cols=83  Identities=25%  Similarity=0.408  Sum_probs=54.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCC-CC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhhhcC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-----RAVTRSYYRG  158 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~~  158 (173)
                      -||+++|.+|+||||+-..+..+-.. +.  .-+|+.++..  .+.+- ..+-|.+||++||+.+     .......+++
T Consensus         5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHs--h~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHS--HVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeeh--hhhhh-hhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence            48999999999999987665543211 11  1223333332  22222 2456899999999854     2234567889


Q ss_pred             CCEEEEEEeCCCCC
Q psy13826        159 AAGALMVIDVSHVK  172 (173)
Q Consensus       159 ~~~~ilv~d~t~~~  172 (173)
                      .++++.+||+..+|
T Consensus        82 V~vli~vFDves~e   95 (295)
T KOG3886|consen   82 VQVLIYVFDVESRE   95 (295)
T ss_pred             heeeeeeeeccchh
Confidence            99999999998753

>KOG4252|consensus

Probab=98.51  E-value=1.3e-08  Score=71.33  Aligned_cols=70  Identities=21%  Similarity=0.401  Sum_probs=51.5

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhhhhccccCCCCCccee
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYSYI   86 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~   86 (173)
                      .++..+|++++|..+|||++++.|||++.|...|.-|++..++...........+..+|+      .+++++++..
T Consensus        16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWd------tagqeEfDaI   85 (246)
T KOG4252|consen   16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWD------TAGQEEFDAI   85 (246)
T ss_pred             hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHH------hccchhHHHH
Confidence            456788999999999999999999999999999999998777554433333333334433      3456665543

>PRK12740 elongation factor G; Reviewed

Probab=98.50  E-value=2.4e-07  Score=78.81  Aligned_cols=80  Identities=20%  Similarity=0.226  Sum_probs=54.4

Q ss_pred             EeCCCCChHHHHHHHHhCCCC--C-----------CCC---CceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhh
Q psy13826         92 IGDMGVGKSCLLHQFTEQKFM--P-----------DCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY  155 (173)
Q Consensus        92 ~G~~~vGKssl~~~~~~~~~~--~-----------~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~  155 (173)
                      +|..++|||||+++++...-.  .           ++.   ...|.+.......+......+.+|||||+..|...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            589999999999999643211  0           000   011222222222333345678999999998887777788


Q ss_pred             hcCCCEEEEEEeCCCC
Q psy13826        156 YRGAAGALMVIDVSHV  171 (173)
Q Consensus       156 ~~~~~~~ilv~d~t~~  171 (173)
                      ++.+|++++|+|.++.
T Consensus        81 l~~aD~vllvvd~~~~   96 (668)
T PRK12740         81 LRVLDGAVVVVCAVGG   96 (668)
T ss_pred             HHHhCeEEEEEeCCCC
Confidence            9999999999999864

>cd04103 Centaurin_gamma Centaurin gamma

Probab=98.50  E-value=2e-07  Score=65.19  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=31.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      +||+++|++|||||||+.||..+.|...+.++.+..
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~   36 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF   36 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce
Confidence            489999999999999999999999988777665543

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PTZ00369 Ras-like protein; Provisional

Probab=98.50  E-value=2e-07  Score=67.01  Aligned_cols=39  Identities=28%  Similarity=0.428  Sum_probs=35.0

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      .+||+++|++|||||||++||..+.|...+.+|.+..+.
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~   43 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR   43 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE
Confidence            479999999999999999999999999899898776553

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.49  E-value=4.5e-07  Score=64.42  Aligned_cols=57  Identities=21%  Similarity=0.307  Sum_probs=40.3

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG  144 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g  144 (173)
                      ...++++++|.||||||||+|++.+..... ..+..|.+.....+.++.   .+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACN-VGATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccce-ecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            445899999999999999999999865422 233345444444444433   477899998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.49  E-value=1.5e-07  Score=66.30  Aligned_cols=38  Identities=21%  Similarity=0.356  Sum_probs=33.9

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      +||+++|++|||||||+.||..+.|...+.+|.+....
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~   38 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH   38 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEE
Confidence            49999999999999999999999999999999775443

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04140 ARHI_like ARHI subfamily

Probab=98.48  E-value=2.5e-07  Score=64.92  Aligned_cols=37  Identities=24%  Similarity=0.423  Sum_probs=33.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||+|+++|+.+.|...+.+|.+..+
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~   38 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY   38 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE
Confidence            6999999999999999999999999888888876544

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04175 Rap1 Rap1 subgroup

Probab=98.47  E-value=2.4e-07  Score=64.81  Aligned_cols=37  Identities=30%  Similarity=0.463  Sum_probs=33.4

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||||+.+|+.+.|...+.+|++..+
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~   38 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY   38 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE
Confidence            6999999999999999999999999988888876544

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04109 Rab28 Rab28 subfamily

Probab=98.47  E-value=2.4e-07  Score=68.02  Aligned_cols=37  Identities=27%  Similarity=0.458  Sum_probs=33.6

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||+|+++|..+.|...+.+|++..+
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~   37 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDF   37 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEE
Confidence            5999999999999999999999999999999977443

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PLN00023 GTP-binding protein; Provisional

Probab=98.47  E-value=1.5e-07  Score=72.69  Aligned_cols=41  Identities=24%  Similarity=0.313  Sum_probs=36.9

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +...+||+++|++|||||||+++|+.+.|...+.+|++..+
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~   58 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTV   58 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeE
Confidence            44678999999999999999999999999999999988654

>cd01864 Rab19 Rab19 subfamily

Probab=98.47  E-value=3.3e-07  Score=64.21  Aligned_cols=37  Identities=32%  Similarity=0.630  Sum_probs=33.3

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +.+||+++|++|+|||+|++++..+.|...+.+|.+.
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~   38 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGV   38 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccce
Confidence            5689999999999999999999999999888888654

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04142 RRP22 RRP22 subfamily

Probab=98.47  E-value=1.1e-07  Score=69.00  Aligned_cols=34  Identities=26%  Similarity=0.472  Sum_probs=31.5

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD   49 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~   49 (173)
                      +||+++|++|||||||++||+.+.|...+.||.+
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~   34 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEH   34 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccc
Confidence            5899999999999999999999999988888865

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04111 Rab39 Rab39 subfamily

Probab=98.47  E-value=2.4e-07  Score=67.88  Aligned_cols=38  Identities=39%  Similarity=0.506  Sum_probs=33.9

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|++|||||+|+++|..+.|...+.+|++..+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~   39 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDF   39 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEE
Confidence            57999999999999999999999999988888876543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.47  E-value=3.1e-07  Score=67.37  Aligned_cols=39  Identities=26%  Similarity=0.337  Sum_probs=35.0

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+|++++|++|||||||++|+..+.|...+.+|++..+
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~   46 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEV   46 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE
Confidence            457999999999999999999999999999999987654

>cd01866 Rab2 Rab2 subfamily

Probab=98.46  E-value=3.4e-07  Score=64.40  Aligned_cols=39  Identities=56%  Similarity=0.928  Sum_probs=34.2

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      ++.+||+++|++|||||+|++++..+++...+.+|.+..
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~   40 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE   40 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcccee
Confidence            467899999999999999999999999988887776543

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04134 Rho3 Rho3 subfamily

Probab=98.46  E-value=2.3e-07  Score=66.73  Aligned_cols=37  Identities=27%  Similarity=0.308  Sum_probs=33.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ||+++|++|||||+|+.||..+.|...+.+|++..+.
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~   38 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV   38 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE
Confidence            8999999999999999999999999989899765553

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=98.46  E-value=2e-07  Score=65.34  Aligned_cols=36  Identities=28%  Similarity=0.534  Sum_probs=32.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      +||+++|++|||||+|++++..++|...+.+|.+..
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~   37 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID   37 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeE
Confidence            699999999999999999999999998888887643

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PLN03108 Rab family protein; Provisional

Probab=98.46  E-value=2.3e-07  Score=67.91  Aligned_cols=40  Identities=55%  Similarity=0.899  Sum_probs=35.0

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ++.+||+++|++|||||+|+++++.++|...+.+|++..+
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~   43 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF   43 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceE
Confidence            4678999999999999999999999999888888876543

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.45  E-value=2e-07  Score=73.33  Aligned_cols=83  Identities=12%  Similarity=0.172  Sum_probs=42.5

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceee---eeEEEEEEECCeEEEEEEEeCCCccccccchhh-----h
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGV---EFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRS-----Y  155 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~-----~  155 (173)
                      ...++|++.|++|+|||||+|.+.+-.-.++.....|.   +.....+.. .+.-.+.+||.||...-..-...     -
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            35689999999999999999999763322221211111   111222221 22225789999996432222222     3


Q ss_pred             hcCCCEEEEEEe
Q psy13826        156 YRGAAGALMVID  167 (173)
Q Consensus       156 ~~~~~~~ilv~d  167 (173)
                      +...|.+|++.+
T Consensus       112 ~~~yD~fiii~s  123 (376)
T PF05049_consen  112 FYRYDFFIIISS  123 (376)
T ss_dssp             GGG-SEEEEEES
T ss_pred             ccccCEEEEEeC
Confidence            456888888765

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG0090|consensus

Probab=98.45  E-value=2.2e-07  Score=66.97  Aligned_cols=77  Identities=19%  Similarity=0.342  Sum_probs=55.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc---CCCEEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR---GAAGALM  164 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~---~~~~~il  164 (173)
                      .|+++|+.++|||+|..++..+.+...+. .+..+  ...+.+++..  .++.|.||+.+.+.-...++.   .+-++||
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-Siepn--~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLITGSHRGTVT-SIEPN--EATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             cEEEEecCCCCceeeeeehhcCCccCeee-eeccc--eeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            58999999999999999999986544322 22222  2223333333  678899999988765555665   7999999


Q ss_pred             EEeCC
Q psy13826        165 VIDVS  169 (173)
Q Consensus       165 v~d~t  169 (173)
                      |+|..
T Consensus       115 VVDSa  119 (238)
T KOG0090|consen  115 VVDSA  119 (238)
T ss_pred             EEecc
Confidence            99975

>cd00066 G-alpha G protein alpha subunit

Probab=98.44  E-value=1.1e-06  Score=68.36  Aligned_cols=39  Identities=18%  Similarity=0.380  Sum_probs=35.5

Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      ..+.+.+||++||...+..|..++.+++++++|+|+++.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~  197 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEY  197 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhc
Confidence            356788999999999999999999999999999999874

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd04116 Rab9 Rab9 subfamily

Probab=98.44  E-value=3.3e-07  Score=64.47  Aligned_cols=39  Identities=33%  Similarity=0.493  Sum_probs=34.5

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|+++||||+|+++|..+.|...+.+|++..+
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~   42 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF   42 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEE
Confidence            568999999999999999999999999988888876543

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04124 RabL2 RabL2 subfamily

Probab=98.44  E-value=2.3e-07  Score=64.93  Aligned_cols=35  Identities=34%  Similarity=0.403  Sum_probs=31.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +||+++|++|||||||+.||..+.|.+.+.+|.+.
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~   35 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYAL   35 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceee
Confidence            58999999999999999999999998887777554

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.44  E-value=2.6e-07  Score=64.68  Aligned_cols=37  Identities=43%  Similarity=0.728  Sum_probs=32.9

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      .+||+++|++|||||+|++|+..+.|...+.+|.+..
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~   38 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD   38 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee
Confidence            4799999999999999999999999988888886643

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.44  E-value=2.2e-07  Score=66.45  Aligned_cols=40  Identities=28%  Similarity=0.369  Sum_probs=34.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      +||+++|++|||||+|+++|..+.|...+.+|++..+...
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~   40 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN   40 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE
Confidence            4899999999999999999999999998888876655433

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.44  E-value=8.1e-07  Score=62.43  Aligned_cols=36  Identities=25%  Similarity=0.406  Sum_probs=28.5

Q ss_pred             EEEEEeCCCccc----cccchhhhhcCCCEEEEEEeCCCC
Q psy13826        136 KLQIWDTAGQER----FRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       136 ~l~i~D~~g~~~----~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      .+.|+|+||-..    ...++..++..+|++|+|.+.++.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~  141 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD  141 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc
Confidence            377899999632    236677888999999999998874

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd04176 Rap2 Rap2 subgroup

Probab=98.43  E-value=3.7e-07  Score=63.69  Aligned_cols=35  Identities=31%  Similarity=0.508  Sum_probs=32.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +||+++|++|||||+|+.+|..+.|...+.+|.+.
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~   36 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED   36 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh
Confidence            69999999999999999999999999888888653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04118 Rab24 Rab24 subfamily

Probab=98.43  E-value=2.4e-07  Score=66.64  Aligned_cols=37  Identities=22%  Similarity=0.477  Sum_probs=32.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccccc-CcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFL-GLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~-~~~~t~~~~~   52 (173)
                      +||+++|++|||||||+.+|+.++|.. .+.+|++..+
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~   38 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAF   38 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEE
Confidence            489999999999999999999999975 6888876544

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01868 Rab11_like Rab11-like

Probab=98.42  E-value=3.2e-07  Score=64.17  Aligned_cols=39  Identities=44%  Similarity=0.697  Sum_probs=34.0

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +.+||+++|+++||||+|++++..+.|...+.+|.+..+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   40 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEF   40 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEE
Confidence            457999999999999999999999999888888876433

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.42  E-value=3.4e-07  Score=63.72  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=33.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++++|||||+++++.+.|...+.+|++..+
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~   37 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDF   37 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEE
Confidence            4899999999999999999999999988888876544

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01870 RhoA_like RhoA-like subfamily

Probab=98.41  E-value=4.1e-07  Score=64.22  Aligned_cols=37  Identities=30%  Similarity=0.363  Sum_probs=33.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .||+++|++|||||+|+.+|..+.|...+.+|.+..+
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~   38 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY   38 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce
Confidence            5999999999999999999999999988888876544

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04143 Rhes_like Rhes_like subfamily

Probab=98.41  E-value=3.3e-07  Score=68.77  Aligned_cols=35  Identities=17%  Similarity=0.417  Sum_probs=32.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +||+++|++|||||||+++|+.++|...+.+|++.
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d   35 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIED   35 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhH
Confidence            58999999999999999999999999888889763

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.40  E-value=3.4e-07  Score=64.52  Aligned_cols=38  Identities=37%  Similarity=0.561  Sum_probs=33.6

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|++|||||+|+.+|+.+.|...+.+|.+..+
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~   39 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDF   39 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEE
Confidence            37999999999999999999999999988888876543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.39  E-value=4.5e-07  Score=63.26  Aligned_cols=36  Identities=31%  Similarity=0.504  Sum_probs=31.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      +||+++|++|||||||+++++.+.|...+.+|....
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~   36 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS   36 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh
Confidence            499999999999999999999999988887776533

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.39  E-value=3.9e-07  Score=66.72  Aligned_cols=40  Identities=30%  Similarity=0.473  Sum_probs=35.4

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      +||+++|++|||||||++||.++.|...+.+|++..+...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~   45 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAK   45 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEE
Confidence            7999999999999999999999999999999876554433

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.39  E-value=7e-07  Score=77.62  Aligned_cols=88  Identities=20%  Similarity=0.285  Sum_probs=59.9

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCC--C---------CCCC---ceeeeeEEEE--EEE--------------CC
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFM--P---------DCPH---TIGVEFGTRI--IEV--------------HG  132 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~--~---------~~~~---t~~~~~~~~~--~~~--------------~~  132 (173)
                      .+...+|+++|..++|||||+.+++...-.  .         ++.+   ..|.++....  +..              .+
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            345679999999999999999999864311  0         0111   1111222111  111              12


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      ....+.+.||||+.+|.......++.+|++|+|+|.++
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~  133 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE  133 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC
Confidence            35678899999999998777778899999999999875

>cd04125 RabA_like RabA-like subfamily

Probab=98.38  E-value=5.4e-07  Score=64.58  Aligned_cols=37  Identities=46%  Similarity=0.654  Sum_probs=32.9

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||+|+++|..+.|...+.+|.+..+
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~   37 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDF   37 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEE
Confidence            4899999999999999999999999888888876443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04135 Tc10 TC10 subfamily

Probab=98.38  E-value=5.9e-07  Score=63.32  Aligned_cols=37  Identities=27%  Similarity=0.430  Sum_probs=32.7

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|+|||+|+++|..+.|...+.+|....+
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~   37 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY   37 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee
Confidence            4999999999999999999999999888888865443

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0395|consensus

Probab=98.36  E-value=2.6e-07  Score=66.92  Aligned_cols=44  Identities=25%  Similarity=0.383  Sum_probs=38.5

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeec
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVST   58 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~   58 (173)
                      .+||+++|.+|||||+|+.||+.++|...|.||++..+.+....
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v   46 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTV   46 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEE
Confidence            47999999999999999999999999999999998766554433

>PTZ00416 elongation factor 2; Provisional

Probab=98.36  E-value=1.5e-06  Score=75.45  Aligned_cols=87  Identities=20%  Similarity=0.286  Sum_probs=58.5

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCC--C---------CCCC---ceeeeeEEE--EEEEC--------CeEEEEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM--P---------DCPH---TIGVEFGTR--IIEVH--------GEKIKLQI  139 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~--~---------~~~~---t~~~~~~~~--~~~~~--------~~~~~l~i  139 (173)
                      +...+|+++|..++|||||+.+++...-.  .         ++.+   ..|.+....  .+...        ++...+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            34569999999999999999999863211  0         0000   011122111  11222        22567889


Q ss_pred             EeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        140 WDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       140 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .||||+.+|.......++.+|++|+|+|.++
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~  127 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVE  127 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCC
Confidence            9999999887666777899999999999875

>cd04144 Ras2 Ras2 subfamily

Probab=98.35  E-value=4.2e-07  Score=65.37  Aligned_cols=36  Identities=28%  Similarity=0.408  Sum_probs=32.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ||+++|++|||||||+++|+.+.|...+.+|.+..+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~   36 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY   36 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE
Confidence            689999999999999999999999988888876544

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.35  E-value=7.2e-07  Score=63.04  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=32.0

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +|++++|++|||||+|+.+|..+.|..++.+|...
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~   35 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD   35 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee
Confidence            59999999999999999999999999999988643

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.35  E-value=8.5e-07  Score=61.75  Aligned_cols=38  Identities=29%  Similarity=0.472  Sum_probs=33.3

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|++|||||+|+++|..+.|...+.+|.+..+
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~   39 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY   39 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE
Confidence            36999999999999999999999999888888866444

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.34  E-value=1.1e-06  Score=68.33  Aligned_cols=57  Identities=23%  Similarity=0.360  Sum_probs=44.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~  145 (173)
                      ..+++.++|-|||||||++|++++... ....+..|.+.....+.++..   +.++||||.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence            346799999999999999999998865 334445577666667776665   789999995

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.34  E-value=6.8e-07  Score=62.36  Aligned_cols=37  Identities=19%  Similarity=0.391  Sum_probs=32.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhc--ccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQ--KYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~--~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||||++++..+  .|..++.+|.+..+
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~   39 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDF   39 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEE
Confidence            48999999999999999999865  78888988876544

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04177 RSR1 RSR1 subgroup

Probab=98.33  E-value=8.1e-07  Score=62.45  Aligned_cols=37  Identities=30%  Similarity=0.490  Sum_probs=33.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +|++++|++|||||+|+.+|.++.|...+.+|.+..+
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~   38 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY   38 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE
Confidence            6999999999999999999999999988888876544

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.32  E-value=2.5e-06  Score=73.27  Aligned_cols=87  Identities=23%  Similarity=0.319  Sum_probs=60.0

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCC-----------CCCC---ceeeeeEEE----EEEECCeEEEEEEEeCCCc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-----------DCPH---TIGVEFGTR----IIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~-----------~~~~---t~~~~~~~~----~~~~~~~~~~l~i~D~~g~  145 (173)
                      +...+|+++|..++|||||+.+++...-..           ++.+   ..|.+....    .+..++....+.+.||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            346689999999999999999998532110           0110   001111111    1223445678889999999


Q ss_pred             cccccchhhhhcCCCEEEEEEeCCC
Q psy13826        146 ERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       146 ~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .+|.......++.+|++|+|+|...
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~  122 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVE  122 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCC
Confidence            9987777788899999999999764

>cd04113 Rab4 Rab4 subfamily

Probab=98.31  E-value=6.9e-07  Score=62.18  Aligned_cols=36  Identities=53%  Similarity=0.820  Sum_probs=31.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      +|++++|+++||||+|++++..+.|...+.++.+..
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~   36 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVE   36 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee
Confidence            599999999999999999999999988887776543

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.30  E-value=3.3e-06  Score=68.63  Aligned_cols=85  Identities=16%  Similarity=0.330  Sum_probs=61.2

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC--CeEEEEEEEeCCCccccccchhhhhcC---
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH--GEKIKLQIWDTAGQERFRAVTRSYYRG---  158 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~D~~g~~~~~~~~~~~~~~---  158 (173)
                      ...-.|+++|+.++|||+|+.+|.+.+   ++.++.+.+|....+.-+  .....+.+|...|...+..+.+..+..   
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            344589999999999999999987643   456678888766554332  123568899998877776666554443   


Q ss_pred             -CCEEEEEEeCCCC
Q psy13826        159 -AAGALMVIDVSHV  171 (173)
Q Consensus       159 -~~~~ilv~d~t~~  171 (173)
                       --+||+|.|++.|
T Consensus       100 ~~t~vvIvlDlS~P  113 (472)
T PF05783_consen  100 PNTLVVIVLDLSKP  113 (472)
T ss_pred             cceEEEEEecCCCh
Confidence             2478889999876

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=98.28  E-value=9e-07  Score=62.20  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=31.9

Q ss_pred             EEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      |+++|++|||||+|++||+.+.|...+.||.++..
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~   36 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS   36 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce
Confidence            78999999999999999999999999999987654

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.27  E-value=1.1e-06  Score=61.15  Aligned_cols=37  Identities=32%  Similarity=0.481  Sum_probs=32.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||||+.+++.+.|...+.++.+..+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~   37 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY   37 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE
Confidence            4999999999999999999999999888888765433

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0393|consensus

Probab=98.27  E-value=3.9e-07  Score=65.47  Aligned_cols=38  Identities=29%  Similarity=0.374  Sum_probs=34.4

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      ..+|+++|||.+||||||+..|..+.|+..|.||+=..
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdn   40 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDN   40 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEcc
Confidence            45799999999999999999999999999999996433

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.27  E-value=6.3e-07  Score=59.48  Aligned_cols=34  Identities=32%  Similarity=0.375  Sum_probs=29.5

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcc-cccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQ-LTQD   49 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~-~t~~   49 (173)
                      +|++++|+.|||||+|+.||.++.|...+. +|++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~   35 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG   35 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh
Confidence            499999999999999999999999987665 5655

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.27  E-value=1.1e-06  Score=61.19  Aligned_cols=37  Identities=30%  Similarity=0.504  Sum_probs=32.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++++|||+|++++..+.+...+.+|.+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   38 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAF   38 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE
Confidence            6999999999999999999999999887777876543

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=98.26  E-value=8.1e-07  Score=62.18  Aligned_cols=33  Identities=27%  Similarity=0.518  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD   49 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~   49 (173)
                      ||+++|++|||||+|+.+|+.+.|...+.+|.+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~   33 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE   33 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChH
Confidence            689999999999999999999999888888764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=98.26  E-value=8.1e-07  Score=65.58  Aligned_cols=34  Identities=35%  Similarity=0.627  Sum_probs=30.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccc-cCcccccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYF-LGLQLTQD   49 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~-~~~~~t~~   49 (173)
                      +||+++|++|||||+|+.+|+.++|. ..+.++.+
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~   35 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD   35 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc
Confidence            59999999999999999999999997 67777764

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04114 Rab30 Rab30 subfamily

Probab=98.25  E-value=2.7e-06  Score=59.59  Aligned_cols=38  Identities=37%  Similarity=0.755  Sum_probs=33.0

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ...+||+++|++|||||+|+.++..+.+...+.+|++.
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~   42 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV   42 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee
Confidence            45689999999999999999999999888877777653

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=5.5e-06  Score=65.33  Aligned_cols=88  Identities=19%  Similarity=0.231  Sum_probs=61.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCC--CCC---------------------------CCCCceeeeeEEEEEEECCeEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FMP---------------------------DCPHTIGVEFGTRIIEVHGEKI  135 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~~~  135 (173)
                      ..++++++|+..+|||||+-|++..-  +..                           ......|.++......+.....
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~   85 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY   85 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence            45899999999999999999998542  111                           0011123444444444555566


Q ss_pred             EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      .+.|.|+||+..|-.-.-.-..+||+.|||+|..+.+
T Consensus        86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e  122 (428)
T COG5256          86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE  122 (428)
T ss_pred             eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc
Confidence            8999999998887644444567899999999998764

>cd04112 Rab26 Rab26 subfamily

Probab=98.23  E-value=1.2e-06  Score=63.09  Aligned_cols=37  Identities=35%  Similarity=0.684  Sum_probs=31.1

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccccc-CcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFL-GLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~-~~~~t~~~~~   52 (173)
                      +||+++|++|||||||+.||..+.|.. .+.+|.+..+
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~   38 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDF   38 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCccccee
Confidence            599999999999999999999999964 5677765443

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01862 Rab7 Rab7 subfamily

Probab=98.23  E-value=2.1e-06  Score=60.26  Aligned_cols=36  Identities=36%  Similarity=0.573  Sum_probs=31.9

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      +||+++|+++||||||++++.++.+...+.+|.+..
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~   36 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD   36 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceE
Confidence            489999999999999999999999988887776643

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=98.22  E-value=1.5e-06  Score=60.66  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=31.0

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|+++||||||+.|+..+.|. .+.||++...
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~   36 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV   36 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce
Confidence            38999999999999999999999997 4778877543

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01893 Miro1 Miro1 subfamily

Probab=98.21  E-value=2.1e-06  Score=60.24  Aligned_cols=33  Identities=27%  Similarity=0.515  Sum_probs=28.7

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCccccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQ   48 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~   48 (173)
                      .||+++|++|||||+|++||..++|...+..+.
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~   33 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL   33 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc
Confidence            389999999999999999999999987665543

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.21  E-value=1.7e-06  Score=61.85  Aligned_cols=37  Identities=14%  Similarity=0.184  Sum_probs=31.7

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|+++||||+|+.|+..+.|.. +.||.+..+
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~   53 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV   53 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce
Confidence            4799999999999999999999998975 667877544

>cd04126 Rab20 Rab20 subfamily

Probab=98.21  E-value=1.9e-06  Score=63.60  Aligned_cols=36  Identities=33%  Similarity=0.563  Sum_probs=30.9

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|+++||||+|++||..++|.. +.+|++..+
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~   36 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAF   36 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEE
Confidence            489999999999999999999999975 567776543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.20  E-value=1.4e-06  Score=59.38  Aligned_cols=32  Identities=25%  Similarity=0.500  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ||+++|++|||||||++||+.+.+.  +.+|.+.
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~   33 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV   33 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeE
Confidence            8999999999999999999988773  4556443

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.20  E-value=1.9e-06  Score=61.15  Aligned_cols=37  Identities=14%  Similarity=0.192  Sum_probs=31.6

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|++|||||||+.|+..++|. .+.||++...
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~   49 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNV   49 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccce
Confidence            479999999999999999999988885 4678877544

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>TIGR00092 GTP-binding protein YchF

Probab=98.19  E-value=1e-05  Score=63.69  Aligned_cols=82  Identities=20%  Similarity=0.109  Sum_probs=54.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCC-CC-CCCCc-eeeeeEEEEEEECCe---------------EEEEEEEeCCCcccc
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKF-MP-DCPHT-IGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERF  148 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~-~~-~~~~t-~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~  148 (173)
                      +|+.++|.|+||||||.+.+.+... .. +|+.| +..+  ...+.+.+.               ...+++.|.+|.-.-
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~--~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g   80 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPN--AGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG   80 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCc--eeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence            6899999999999999999998765 33 33322 2222  223333332               245788899995431


Q ss_pred             ----ccch---hhhhcCCCEEEEEEeCCC
Q psy13826        149 ----RAVT---RSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       149 ----~~~~---~~~~~~~~~~ilv~d~t~  170 (173)
                          ..+.   -..++.+|+++.|.|..+
T Consensus        81 As~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        81 ASKGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             hhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                1222   235788999999999754

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01861 Rab6 Rab6 subfamily

Probab=98.18  E-value=2.6e-06  Score=59.17  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=31.1

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +||+++|+++||||+|++++..+.+...+.++.+.
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~   35 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGI   35 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceee
Confidence            48999999999999999999999998877777654

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.18  E-value=3.2e-06  Score=58.79  Aligned_cols=36  Identities=47%  Similarity=0.654  Sum_probs=31.6

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      +||+++|++++|||+|++++..+.+...+.++.+..
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~   36 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVD   36 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeE
Confidence            599999999999999999999999988777776643

Rab GTPases are implicated in vesicle trafficking.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=98.17  E-value=2e-06  Score=60.63  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=30.9

Q ss_pred             EEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      |+++|++|||||||+.+|..+.|...+.+|....+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~   35 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY   35 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee
Confidence            58999999999999999999999988888865544

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd00157 Rho Rho (Ras homology) family

Probab=98.16  E-value=3.2e-06  Score=59.22  Aligned_cols=35  Identities=34%  Similarity=0.497  Sum_probs=30.5

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +||+++|++|||||+|+++++.+.+...+.+|...
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~   35 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD   35 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee
Confidence            58999999999999999999999997777776543

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PLN00223 ADP-ribosylation factor; Provisional

Probab=98.16  E-value=2.6e-06  Score=60.89  Aligned_cols=37  Identities=14%  Similarity=0.203  Sum_probs=32.2

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|+++||||+|++|+..++|. .+.||++...
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~   53 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV   53 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE
Confidence            479999999999999999999998886 4678877654

>cd01882 BMS1 Bms1

Probab=98.15  E-value=1e-05  Score=59.88  Aligned_cols=79  Identities=22%  Similarity=0.311  Sum_probs=50.2

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      .....|+++|.+|+|||+|++.+....-........|. +   .+ .......+.+.||+|.-  ..+. ...+.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEE
Confidence            34578999999999999999999865211111111121 1   11 11234457788999853  2222 3457899999


Q ss_pred             EEEeCCC
Q psy13826        164 MVIDVSH  170 (173)
Q Consensus       164 lv~d~t~  170 (173)
                      +++|.+.
T Consensus       109 lviDa~~  115 (225)
T cd01882         109 LLIDASF  115 (225)
T ss_pred             EEEecCc
Confidence            9999875

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=9.3e-06  Score=65.85  Aligned_cols=84  Identities=19%  Similarity=0.235  Sum_probs=63.4

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .=|+++|.-..|||||+..+-..........-+.-.+....+..+. ..-.+.+.||||++.|..++..-..-+|+++||
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV   85 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV   85 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence            3488999999999999999987765443333333333344444431 234678889999999999999888999999999


Q ss_pred             EeCCC
Q psy13826        166 IDVSH  170 (173)
Q Consensus       166 ~d~t~  170 (173)
                      +|+.|
T Consensus        86 Va~dD   90 (509)
T COG0532          86 VAADD   90 (509)
T ss_pred             EEccC
Confidence            99876

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.14  E-value=3.4e-06  Score=59.83  Aligned_cols=35  Identities=31%  Similarity=0.382  Sum_probs=31.0

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      .||+++|++|||||+|+.++..+.|...+.+|.+.
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~   36 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIEN   36 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhh
Confidence            59999999999999999999999998877777543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01873 RhoBTB RhoBTB subfamily

Probab=98.14  E-value=1.7e-06  Score=62.66  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=28.1

Q ss_pred             eeEEEEEcCCCCchhhhhH-Hhhhc-----ccccCcccccc
Q psy13826         15 IFKYIIIGDMGVGKSCLLH-QFTEQ-----KYFLGLQLTQD   49 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~-~~~~~-----~~~~~~~~t~~   49 (173)
                      .+||+++|++|||||||+. +++.+     .|..++.||++
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~   42 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVW   42 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCcee
Confidence            3699999999999999996 66544     45677888874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.13  E-value=3.3e-06  Score=60.40  Aligned_cols=37  Identities=14%  Similarity=0.257  Sum_probs=30.8

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|++|||||||++++..+.|... .+|.+...
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~   39 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNT   39 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccce
Confidence            47999999999999999999999988754 56665433

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04158 ARD1 ARD1 subfamily

Probab=98.13  E-value=2.9e-06  Score=59.78  Aligned_cols=35  Identities=17%  Similarity=0.385  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ||+++|+++||||+|+.|++.+.|.. +.+|++...
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~   35 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV   35 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE
Confidence            68999999999999999999998865 778877544

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PLN03118 Rab family protein; Provisional

Probab=98.12  E-value=3.7e-06  Score=61.47  Aligned_cols=39  Identities=41%  Similarity=0.576  Sum_probs=32.3

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      .....+||+++|++|||||+|+.+|+.+.+. .+.+|.+.
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~   48 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGV   48 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcee
Confidence            3456789999999999999999999998874 46667654

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.12  E-value=3.4e-06  Score=59.03  Aligned_cols=58  Identities=22%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCC--CCC--ceee--eeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPD--CPH--TIGV--EFGTRIIEVHGEKIKLQIWDTAGQERF  148 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~--t~~~--~~~~~~~~~~~~~~~l~i~D~~g~~~~  148 (173)
                      .++++|++|||||||+|.+.+..-...  .+.  ..|.  +.....+.+.+..   .+.||||-..+
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~  100 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF  100 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence            689999999999999999998742211  110  1111  1223344453332   46799996544

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd04123 Rab21 Rab21 subfamily

Probab=98.12  E-value=4.6e-06  Score=57.73  Aligned_cols=35  Identities=29%  Similarity=0.500  Sum_probs=30.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +||+++|++|||||+|+++++.+.+...+.++...
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~   35 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQA   35 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccce
Confidence            59999999999999999999999998776666543

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04129 Rho2 Rho2 subfamily

Probab=98.12  E-value=4.2e-06  Score=59.99  Aligned_cols=37  Identities=30%  Similarity=0.279  Sum_probs=32.1

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .|++++|++|+|||+|++++..+.|...+.+|....+
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~   38 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY   38 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE
Confidence            5999999999999999999999999888877755443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00154 Rab Rab family

Probab=98.12  E-value=4.4e-06  Score=57.33  Aligned_cols=37  Identities=38%  Similarity=0.574  Sum_probs=32.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++++|||||++++..+.+...+.+|.+..+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~   37 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDF   37 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeee
Confidence            4899999999999999999999999888777766544

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04149 Arf6 Arf6 subfamily

Probab=98.11  E-value=3.4e-06  Score=59.51  Aligned_cols=37  Identities=14%  Similarity=0.194  Sum_probs=31.2

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|+++||||||++++..++|.. +.||++...
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~   45 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV   45 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccce
Confidence            4799999999999999999999888864 667776544

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01863 Rab18 Rab18 subfamily

Probab=98.11  E-value=3e-06  Score=58.88  Aligned_cols=36  Identities=42%  Similarity=0.599  Sum_probs=31.7

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      +||+++|++++|||+|++++..+.+...+.+|.+..
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~   36 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVD   36 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccce
Confidence            599999999999999999999999987777776644

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.08  E-value=4.5e-06  Score=57.36  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=32.2

Q ss_pred             EEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      |+++|++|||||||++++..+.|...+.+|.+....
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~   37 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR   37 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE
Confidence            789999999999999999999999998888776553

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.07  E-value=1.4e-05  Score=55.63  Aligned_cols=56  Identities=20%  Similarity=0.296  Sum_probs=35.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG  144 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g  144 (173)
                      ...+++++|.+|||||||+|.+.+..... ..+..+.+.....+..+   ..+.+.||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCC
Confidence            45789999999999999999999865311 11111212222223333   2467889998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK13796 GTPase YqeH; Provisional

Probab=98.07  E-value=1.4e-05  Score=63.32  Aligned_cols=80  Identities=20%  Similarity=0.179  Sum_probs=47.5

Q ss_pred             EeeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCC----CCCCceeeeeEEEEEEE
Q psy13826         55 LVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP----DCPHTIGVEFGTRIIEV  130 (173)
Q Consensus        55 ~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~  130 (173)
                      .+++..+.+.+.++..+....         ...+++++|.+|||||||+|+++......    ..++..|.+.....+.+
T Consensus       138 ~vSAk~g~gI~eL~~~I~~~~---------~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l  208 (365)
T PRK13796        138 LISAQKGHGIDELLEAIEKYR---------EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL  208 (365)
T ss_pred             EEECCCCCCHHHHHHHHHHhc---------CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc
Confidence            345555555555555543321         12479999999999999999998643111    11222333444444445


Q ss_pred             CCeEEEEEEEeCCCcc
Q psy13826        131 HGEKIKLQIWDTAGQE  146 (173)
Q Consensus       131 ~~~~~~l~i~D~~g~~  146 (173)
                      ++.   ..++||||-.
T Consensus       209 ~~~---~~l~DTPGi~  221 (365)
T PRK13796        209 DDG---SFLYDTPGII  221 (365)
T ss_pred             CCC---cEEEECCCcc
Confidence            443   3688999963

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=2.2e-05  Score=61.36  Aligned_cols=85  Identities=21%  Similarity=0.239  Sum_probs=54.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCC-CCCC-CceeeeeEEEEEEE----------C----CeEEEEEEEeCCCcc----
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCP-HTIGVEFGTRIIEV----------H----GEKIKLQIWDTAGQE----  146 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~----------~----~~~~~l~i~D~~g~~----  146 (173)
                      +++-++|.||||||||.+.+....-. .+|+ .|+..+.....+..          .    -....+++.|.+|.-    
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs   82 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS   82 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence            68999999999999999999987643 2333 13332222211110          1    123568899999853    


Q ss_pred             ccccchhhh---hcCCCEEEEEEeCCCC
Q psy13826        147 RFRAVTRSY---YRGAAGALMVIDVSHV  171 (173)
Q Consensus       147 ~~~~~~~~~---~~~~~~~ilv~d~t~~  171 (173)
                      .-+.+...|   +|++|+++-|+|....
T Consensus        83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d  110 (372)
T COG0012          83 KGEGLGNKFLDNIREVDAIIHVVRCFGD  110 (372)
T ss_pred             cCCCcchHHHHhhhhcCeEEEEEEecCC
Confidence            223444444   5889999999987643

>cd04147 Ras_dva Ras-dva subfamily

Probab=98.07  E-value=4.1e-06  Score=60.66  Aligned_cols=33  Identities=24%  Similarity=0.516  Sum_probs=30.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD   49 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~   49 (173)
                      ||+++|++|||||+|+.+|+.+.|...+.+|..
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~   33 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE   33 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh
Confidence            689999999999999999999999988887764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=98.06  E-value=3.5e-06  Score=55.67  Aligned_cols=25  Identities=32%  Similarity=0.719  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      ||+++|++|||||+|+++++.+.+.
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~   25 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFP   25 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCc
Confidence            7999999999999999999999887

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.05  E-value=1.9e-05  Score=61.46  Aligned_cols=62  Identities=19%  Similarity=0.440  Sum_probs=47.8

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCC----------CCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD----------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~  145 (173)
                      ...|.|.++|++|.|||||+|.+++.....+          ..+++.+......+.-++..+.|.+.||+|-
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf   92 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF   92 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence            4678999999999999999999998743322          3455656555555556788899999999993

>cd04157 Arl6 Arl6 subfamily

Probab=98.05  E-value=4.3e-06  Score=58.03  Aligned_cols=36  Identities=14%  Similarity=0.232  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcc-cccCcccccceeE
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQK-YFLGLQLTQDYVC   52 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~-~~~~~~~t~~~~~   52 (173)
                      +|+++|+++||||+|++++..+. +...+.+|++...
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~   37 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV   37 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce
Confidence            48999999999999999999876 4667788877543

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.03  E-value=5.5e-06  Score=58.31  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=30.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +|+++|++|||||+|+++++.+ |...+.+|++...
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~   35 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP   35 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE
Confidence            4899999999999999999976 8888889987643

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.02  E-value=1.2e-05  Score=63.24  Aligned_cols=58  Identities=24%  Similarity=0.437  Sum_probs=35.3

Q ss_pred             EEEEeCCCCChHHHHHHHHhCCCCC--CCCC--cee--eeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQKFMP--DCPH--TIG--VEFGTRIIEVHGEKIKLQIWDTAGQERFR  149 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~~~~~--~~~~--t~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~~  149 (173)
                      ++++|.+|||||||+|++++..-..  +.+.  ..|  .+.....+.+.+..   .+.||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            7899999999999999999764321  1111  011  12223334443322   378999976553

>cd00876 Ras Ras family

Probab=98.01  E-value=7.2e-06  Score=56.61  Aligned_cols=34  Identities=29%  Similarity=0.456  Sum_probs=30.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ||+++|++|+|||+|+.++..+.+...+.++.+.
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~   34 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIED   34 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhH
Confidence            6899999999999999999999898888887653

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.01  E-value=7.1e-06  Score=54.48  Aligned_cols=73  Identities=21%  Similarity=0.285  Sum_probs=48.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc----ccccchhhhhcCCCEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE----RFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----~~~~~~~~~~~~~~~~i  163 (173)
                      |++++|..|+|||+|.+.+-++..  -|..|..+++.       .+.    ..||+|.-    .+....-....++++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~-------d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFN-------DKG----DIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceeecc-------Ccc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            789999999999999999988753  23334433332       221    34999842    11111223457899999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|-..++++|
T Consensus        70 ~v~~and~~s   79 (148)
T COG4917          70 YVHAANDPES   79 (148)
T ss_pred             eeecccCccc
Confidence            9999998875

>PRK12289 GTPase RsgA; Reviewed

Probab=98.00  E-value=1.4e-05  Score=62.99  Aligned_cols=57  Identities=21%  Similarity=0.296  Sum_probs=35.0

Q ss_pred             EEEEeCCCCChHHHHHHHHhCCCCC--CCCC--cee--eeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQKFMP--DCPH--TIG--VEFGTRIIEVHGEKIKLQIWDTAGQERF  148 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~~~~~--~~~~--t~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~  148 (173)
                      ++++|.+|||||||+|.+++..-..  ..+.  ..|  .+.....+.+.+..   .+.||||-..+
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence            7999999999999999999764321  1111  000  12233444453332   57899996544

>KOG1547|consensus

Probab=97.99  E-value=4.3e-05  Score=56.49  Aligned_cols=62  Identities=31%  Similarity=0.533  Sum_probs=46.4

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCC---------CCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMP---------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~  145 (173)
                      ...|+|.++|.+|.|||||++.+.......         .+..|++....+..+.-++.+.++.+.||+|-
T Consensus        44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf  114 (336)
T KOG1547|consen   44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF  114 (336)
T ss_pred             cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence            356899999999999999999887544322         23345555555556666778889999999993

>KOG0705|consensus

Probab=97.99  E-value=7.2e-06  Score=66.74  Aligned_cols=82  Identities=22%  Similarity=0.361  Sum_probs=66.3

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+|+-++|..++|||+|++||+.+.|..+..|.-| .+ .+.+.++++...+-+.|.+|..     ...|....|++|+
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~-kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf  101 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RF-KKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF  101 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcCc-cc-eeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence            468999999999999999999999998877665444 33 4566678888899999998843     2457778999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      ||.+.+.+|
T Consensus       102 vf~~~d~~s  110 (749)
T KOG0705|consen  102 VFSVEDEQS  110 (749)
T ss_pred             EEEeccccC
Confidence            999988764

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.99  E-value=1.8e-05  Score=62.63  Aligned_cols=81  Identities=21%  Similarity=0.198  Sum_probs=47.4

Q ss_pred             EeeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCC----CCCCceeeeeEEEEEEE
Q psy13826         55 LVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP----DCPHTIGVEFGTRIIEV  130 (173)
Q Consensus        55 ~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~----~~~~t~~~~~~~~~~~~  130 (173)
                      .+++..+.+...++..+....         ...+++++|.+|||||||+|+++......    ..++..|.+.....+.+
T Consensus       132 ~vSAk~g~gv~eL~~~l~~~~---------~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~  202 (360)
T TIGR03597       132 LVSAKKGNGIDELLDKIKKAR---------NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL  202 (360)
T ss_pred             EecCCCCCCHHHHHHHHHHHh---------CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe
Confidence            345555555555554443221         12589999999999999999999753211    12222333333334444


Q ss_pred             CCeEEEEEEEeCCCccc
Q psy13826        131 HGEKIKLQIWDTAGQER  147 (173)
Q Consensus       131 ~~~~~~l~i~D~~g~~~  147 (173)
                      ++.   +.++||||-..
T Consensus       203 ~~~---~~l~DtPG~~~  216 (360)
T TIGR03597       203 DDG---HSLYDTPGIIN  216 (360)
T ss_pred             CCC---CEEEECCCCCC
Confidence            322   46899999643

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=97.98  E-value=7.8e-06  Score=56.72  Aligned_cols=35  Identities=20%  Similarity=0.273  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ||+++|++|||||+|+++|..+.+.. +.+|.+...
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~   35 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV   35 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce
Confidence            58999999999999999999999875 456766443

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>COG2262 HflX GTPases [General function prediction only]

Probab=97.97  E-value=2.6e-05  Score=61.51  Aligned_cols=89  Identities=25%  Similarity=0.212  Sum_probs=57.8

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc--ccchhhh-----
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF--RAVTRSY-----  155 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--~~~~~~~-----  155 (173)
                      ......|.++|=.|+|||||+|++.+.............+..++.+.+.+ ...+.+-||-|--+-  ..+...|     
T Consensus       189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE  267 (411)
T COG2262         189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE  267 (411)
T ss_pred             ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH
Confidence            34567899999999999999999997654433222222233355555653 223456699984321  1222222     


Q ss_pred             -hcCCCEEEEEEeCCCCC
Q psy13826        156 -YRGAAGALMVIDVSHVK  172 (173)
Q Consensus       156 -~~~~~~~ilv~d~t~~~  172 (173)
                       ...||.++.|+|.++|+
T Consensus       268 E~~~aDlllhVVDaSdp~  285 (411)
T COG2262         268 EVKEADLLLHVVDASDPE  285 (411)
T ss_pred             HhhcCCEEEEEeecCChh
Confidence             45799999999999984

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.96  E-value=1.8e-05  Score=59.34  Aligned_cols=57  Identities=28%  Similarity=0.443  Sum_probs=35.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCC--CCCCce--e--eeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMP--DCPHTI--G--VEFGTRIIEVHGEKIKLQIWDTAGQERF  148 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~--~~~~t~--~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~  148 (173)
                      .++++|.+|||||||+|++.+.....  +.+...  |  .+.....+.+.+.    .++||||-..+
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~  184 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEF  184 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCcccc
Confidence            68899999999999999999764322  111100  1  1222333444332    58899996543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG2655|consensus

Probab=97.95  E-value=3.1e-05  Score=60.55  Aligned_cols=62  Identities=26%  Similarity=0.469  Sum_probs=45.2

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCC---------CCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD---------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~  145 (173)
                      ...|.+.++|++|.|||||+|.++...+..+         ...|..+......+.-++..+.|.+.||||-
T Consensus        19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf   89 (366)
T KOG2655|consen   19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF   89 (366)
T ss_pred             CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence            3568999999999999999999887754432         2224444444444444677889999999993

>cd04154 Arl2 Arl2 subfamily

Probab=97.95  E-value=1.1e-05  Score=56.93  Aligned_cols=38  Identities=16%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||+.++..+.+ ..+.+|+++..
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~   50 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI   50 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce
Confidence            457999999999999999999998755 45667776443

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00879 Sar1 Sar1 subfamily

Probab=97.95  E-value=1.2e-05  Score=57.52  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=30.5

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      ..+||+++|++|+|||||++++..+++. .+.+|.+..
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~   54 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT   54 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc
Confidence            4579999999999999999999998874 466675543

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.95  E-value=3.2e-05  Score=61.57  Aligned_cols=84  Identities=20%  Similarity=0.301  Sum_probs=65.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHh--CCCCC------------------CCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTE--QKFMP------------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~  145 (173)
                      .-..+||-.|.+|||||...++-  +....                  +.....|+++.+.....+...+.+.+.||||+
T Consensus        12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH   91 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH   91 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence            34678999999999999998862  11100                  11223467777777777778888999999999


Q ss_pred             cccccchhhhhcCCCEEEEEEeCC
Q psy13826        146 ERFRAVTRSYYRGAAGALMVIDVS  169 (173)
Q Consensus       146 ~~~~~~~~~~~~~~~~~ilv~d~t  169 (173)
                      +.|..-...-+..+|..|+|.|..
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaA  115 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAA  115 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecc
Confidence            999988888889999999999975

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.94  E-value=1.9e-05  Score=53.80  Aligned_cols=35  Identities=31%  Similarity=0.503  Sum_probs=30.1

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +||+++|++|+|||+|++++..+.+...+.++...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~   36 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTR   36 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCcee
Confidence            69999999999999999999999887777666443

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.92  E-value=6.6e-06  Score=59.86  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=30.2

Q ss_pred             EcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         21 IGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        21 ~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      ||++|||||||+.||+.+.|...+.+|++..+...
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~   35 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL   35 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEE
Confidence            69999999999999999999999999987655333

Ran is involved in the active transport of proteins through nuclear pores.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=97.91  E-value=1.4e-05  Score=56.59  Aligned_cols=37  Identities=27%  Similarity=0.247  Sum_probs=30.9

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|+++||||+|+.++..++|.. +.+|.+...
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~   51 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV   51 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce
Confidence            4699999999999999999999998875 566765443

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=97.90  E-value=2.9e-05  Score=68.51  Aligned_cols=74  Identities=23%  Similarity=0.288  Sum_probs=50.3

Q ss_pred             CChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECC--e---------E-----EEEEEEeCCCccccccchhhhhcCCC
Q psy13826         97 VGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG--E---------K-----IKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        97 vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~---------~-----~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ++||||+..+.+-.....-...+...+....+..+.  +         .     -.+.+|||||++.|..++...+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            459999999987765443222222222222222221  0         0     12789999999999888888889999


Q ss_pred             EEEEEEeCCC
Q psy13826        161 GALMVIDVSH  170 (173)
Q Consensus       161 ~~ilv~d~t~  170 (173)
                      ++++|+|+++
T Consensus       552 ivlLVVDa~~  561 (1049)
T PRK14845        552 LAVLVVDINE  561 (1049)
T ss_pred             EEEEEEECcc
Confidence            9999999986

>KOG0468|consensus

Probab=97.90  E-value=8.6e-05  Score=61.98  Aligned_cols=88  Identities=23%  Similarity=0.346  Sum_probs=64.1

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCC---------------CCceeeeeEEEEEEE-----CCeEEEEEEEeC
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC---------------PHTIGVEFGTRIIEV-----HGEKIKLQIWDT  142 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~---------------~~t~~~~~~~~~~~~-----~~~~~~l~i~D~  142 (173)
                      .....++.++|.-+.|||+|+..+....-++-.               ....|.++......+     .++..-+++.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            345789999999999999999999866433211               111233333222222     467788999999


Q ss_pred             CCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        143 AGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       143 ~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      +|+-.|.......++.+|++++++|+..
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~E  232 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAE  232 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEccc
Confidence            9999998777788999999999999854

>PRK04213 GTP-binding protein; Provisional

Probab=97.89  E-value=1.6e-05  Score=57.57  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=28.9

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT   47 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t   47 (173)
                      ...+||+++|++|||||||+++++.+.+...+.++
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~   41 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPG   41 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCc
Confidence            34579999999999999999999998876554444

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=97.88  E-value=1.7e-05  Score=56.72  Aligned_cols=37  Identities=27%  Similarity=0.281  Sum_probs=29.7

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ...+||+++|++|||||||++++..+++.. +.+|.+.
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~   51 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP   51 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc
Confidence            445799999999999999999999987753 4555443

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04151 Arl1 Arl1 subfamily

Probab=97.88  E-value=1.3e-05  Score=55.59  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=28.4

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      ||+++|+++||||+|++++..+.+.. +.+|++..
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~   34 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFN   34 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcC
Confidence            68999999999999999999888864 45676543

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.88  E-value=4.6e-05  Score=56.40  Aligned_cols=82  Identities=16%  Similarity=0.107  Sum_probs=49.8

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC--CCCCC---CCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ--KFMPD---CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRS  154 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~--~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------~~~~  154 (173)
                      ..-|.++|++++|||+|+|++.+.  .|...   ...|.|+-.....+.. +....+.+.||+|....+.      ..-.
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence            445789999999999999999998  55422   2334554333222211 2346788999999643321      1112


Q ss_pred             hhcC--CCEEEEEEeC
Q psy13826        155 YYRG--AAGALMVIDV  168 (173)
Q Consensus       155 ~~~~--~~~~ilv~d~  168 (173)
                      .+..  ++++|+..+-
T Consensus        86 ~l~~llss~~i~n~~~  101 (224)
T cd01851          86 ALATLLSSVLIYNSWE  101 (224)
T ss_pred             HHHHHHhCEEEEeccC
Confidence            2223  7777776554

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG1486|consensus

Probab=97.87  E-value=8.1e-05  Score=55.46  Aligned_cols=84  Identities=25%  Similarity=0.237  Sum_probs=53.9

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCC-CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc-------cchhhhhc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-------AVTRSYYR  157 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-------~~~~~~~~  157 (173)
                      --+++++|-|.||||+|+..+..-..... |.-| ..+.-...+.+++.  .+++.|.||.-.-.       ...-..-+
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFT-TLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFT-TLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeee-EEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence            46899999999999999999876543222 2211 22233444555555  46788999843211       11112357


Q ss_pred             CCCEEEEEEeCCCCC
Q psy13826        158 GAAGALMVIDVSHVK  172 (173)
Q Consensus       158 ~~~~~ilv~d~t~~~  172 (173)
                      .||.+++|.|.+..+
T Consensus       139 taDlilMvLDatk~e  153 (364)
T KOG1486|consen  139 TADLILMVLDATKSE  153 (364)
T ss_pred             cccEEEEEecCCcch
Confidence            799999999998754

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=97.85  E-value=1.4e-05  Score=57.36  Aligned_cols=38  Identities=24%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD   49 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~   49 (173)
                      .+...+|+++|++|+|||||+++++.++|...+.++.+
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~   58 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPG   58 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCC
Confidence            44667999999999999999999999877666555543

>KOG3905|consensus

Probab=97.83  E-value=8.8e-05  Score=57.17  Aligned_cols=102  Identities=14%  Similarity=0.240  Sum_probs=66.4

Q ss_pred             hhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCe--EEEEEEEeCCC
Q psy13826         67 LLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE--KIKLQIWDTAG  144 (173)
Q Consensus        67 l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~l~i~D~~g  144 (173)
                      +-..+++..+..........-.|+++|+.++|||||+.++-+.+   .+.+..|.+|....+.-+.+  ...+.+|-..|
T Consensus        33 lWs~iLsev~T~~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDG  109 (473)
T KOG3905|consen   33 LWSEILSEVSTRTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDG  109 (473)
T ss_pred             HHHHHHHHhhhcccccCCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecC
Confidence            33445555555555555556689999999999999999998765   44555666665544433222  34566787778


Q ss_pred             ccccccchhhhhcCC----CEEEEEEeCCCC
Q psy13826        145 QERFRAVTRSYYRGA----AGALMVIDVSHV  171 (173)
Q Consensus       145 ~~~~~~~~~~~~~~~----~~~ilv~d~t~~  171 (173)
                      ......+....+...    ..+||+.|+++|
T Consensus       110 d~~h~~LLk~al~ats~aetlviltasms~P  140 (473)
T KOG3905|consen  110 DLYHKGLLKFALPATSLAETLVILTASMSNP  140 (473)
T ss_pred             chhhhhHHhhcccccCccceEEEEEEecCCc
Confidence            665555555444332    367888899887

>KOG1673|consensus

Probab=97.83  E-value=6.4e-06  Score=56.66  Aligned_cols=52  Identities=15%  Similarity=0.196  Sum_probs=43.1

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITR   64 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~   64 (173)
                      .-.+||-++||+.+||||++..|+++++.+++..+.|..+++......+...
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~I   69 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDI   69 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEE
Confidence            3678999999999999999999999999999888888877766555444433

>KOG0462|consensus

Probab=97.82  E-value=4.4e-05  Score=62.30  Aligned_cols=88  Identities=24%  Similarity=0.339  Sum_probs=64.7

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCC-C----------CC--CCCceeeeeEEEEE---EECCeEEEEEEEeCCCcc
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF-M----------PD--CPHTIGVEFGTRII---EVHGEKIKLQIWDTAGQE  146 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~-~----------~~--~~~t~~~~~~~~~~---~~~~~~~~l~i~D~~g~~  146 (173)
                      .+..-++.++-.-.-|||||..|++.-.- .          +.  -+...|+++..+..   ..+++.+.|.+.||||+-
T Consensus        57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv  136 (650)
T KOG0462|consen   57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV  136 (650)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence            34567899999999999999999984321 1          11  11233444443332   234677999999999999


Q ss_pred             ccccchhhhhcCCCEEEEEEeCCC
Q psy13826        147 RFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       147 ~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      +|......-+..|+++|||+|.++
T Consensus       137 DFs~EVsRslaac~G~lLvVDA~q  160 (650)
T KOG0462|consen  137 DFSGEVSRSLAACDGALLVVDASQ  160 (650)
T ss_pred             cccceehehhhhcCceEEEEEcCc
Confidence            999888888899999999999864

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.80  E-value=0.00011  Score=51.18  Aligned_cols=56  Identities=30%  Similarity=0.397  Sum_probs=39.9

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA  143 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~  143 (173)
                      ...||.+-|+|||||||++.++.+.--...  -+++- +.+..+.-+++.+-+.|.|+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgG-f~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGG-FITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeee-EEeeeeecCCeEeeeEEEEcc
Confidence            357999999999999999999885421111  12221 445666678888888888887

>KOG1489|consensus

Probab=97.78  E-value=9.9e-05  Score=56.60  Aligned_cols=82  Identities=18%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc----ccchhhh---hcCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----RAVTRSY---YRGA  159 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----~~~~~~~---~~~~  159 (173)
                      .+-++|-||+|||||++.+...+.. ..|.-|. ..-..-.+.+++- ..+.+-|.||.-+-    ..+-..|   +..|
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTT-L~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTT-LRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceee-eccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            4459999999999999999876532 2222111 1111112223322 23788899995332    2233333   4579


Q ss_pred             CEEEEEEeCCCC
Q psy13826        160 AGALMVIDVSHV  171 (173)
Q Consensus       160 ~~~ilv~d~t~~  171 (173)
                      +.+++|.|++.+
T Consensus       276 ~~l~fVvD~s~~  287 (366)
T KOG1489|consen  276 KGLLFVVDLSGK  287 (366)
T ss_pred             ceEEEEEECCCc
Confidence            999999999876

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=97.77  E-value=2.8e-05  Score=53.79  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ||+++|++|||||||+++++.+.+ ..+.+|.+...
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~   35 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV   35 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce
Confidence            689999999999999999998884 34556655433

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG1491|consensus

Probab=97.77  E-value=0.00016  Score=55.90  Aligned_cols=86  Identities=20%  Similarity=0.189  Sum_probs=55.9

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC---------------CeEEEEEEEeCCCcccc-
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH---------------GEKIKLQIWDTAGQERF-  148 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------------~~~~~l~i~D~~g~~~~-  148 (173)
                      ..+|+-++|.|+||||||+|.+.........-|...++-....+.+.               .....|+++|++|.-+- 
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            46799999999999999999999876554433322222222233321               23467999999985332 


Q ss_pred             ---ccchhhh---hcCCCEEEEEEeCCC
Q psy13826        149 ---RAVTRSY---YRGAAGALMVIDVSH  170 (173)
Q Consensus       149 ---~~~~~~~---~~~~~~~ilv~d~t~  170 (173)
                         ..+...|   +|.+|+++=|++...
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecC
Confidence               2344443   577999988876543

>KOG1424|consensus

Probab=97.77  E-value=4e-05  Score=62.02  Aligned_cols=57  Identities=19%  Similarity=0.197  Sum_probs=45.9

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~  145 (173)
                      ..+.|-+||=|||||||+||.+.+.+-.. -+.|.|.+-+..++.+...   +.++||||.
T Consensus       313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~~---v~LCDCPGL  369 (562)
T KOG1424|consen  313 DVVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSPS---VCLCDCPGL  369 (562)
T ss_pred             ceeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCCC---ceecCCCCc
Confidence            37899999999999999999999987654 3457787777777776553   568899995

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.76  E-value=0.00013  Score=58.74  Aligned_cols=85  Identities=22%  Similarity=0.334  Sum_probs=65.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCC--CCCC------------CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQK--FMPD------------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV  151 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~--~~~~------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~  151 (173)
                      .-+|+++-.-.-|||||+..++...  |.+.            .....|+++..+...+..+...+.|.||||+..|..-
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            3579999999999999999998542  3221            1223455555555555566678899999999999988


Q ss_pred             hhhhhcCCCEEEEEEeCCC
Q psy13826        152 TRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       152 ~~~~~~~~~~~ilv~d~t~  170 (173)
                      .+..+.-.|++++++|..+
T Consensus        85 VERvl~MVDgvlLlVDA~E  103 (603)
T COG1217          85 VERVLSMVDGVLLLVDASE  103 (603)
T ss_pred             hhhhhhhcceEEEEEEccc
Confidence            8888999999999999864

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.75  E-value=5.5e-05  Score=57.83  Aligned_cols=59  Identities=22%  Similarity=0.338  Sum_probs=35.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCC--CCCCc--ee--eeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMP--DCPHT--IG--VEFGTRIIEVHGEKIKLQIWDTAGQERFR  149 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~--~~~~t--~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~~  149 (173)
                      -.+++|.+|||||||+|++....-..  +.+..  .|  .+.....+.+.+..   .|.||||-..+.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            57899999999999999998642111  11110  11  12234445553222   367999976554

>KOG1145|consensus

Probab=97.75  E-value=7.8e-05  Score=60.94  Aligned_cols=85  Identities=16%  Similarity=0.206  Sum_probs=61.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ...=|.++|.-.-|||||+..|-+..........+.-.+....+.+... -.+.|.||||+..|..++..--.-+|+++|
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            4455789999999999999999876543322222222222333444422 467788999999999999988889999999


Q ss_pred             EEeCCC
Q psy13826        165 VIDVSH  170 (173)
Q Consensus       165 v~d~t~  170 (173)
                      |+...|
T Consensus       231 VVAadD  236 (683)
T KOG1145|consen  231 VVAADD  236 (683)
T ss_pred             EEEccC
Confidence            997665

>KOG3887|consensus

Probab=97.74  E-value=2.5e-05  Score=57.78  Aligned_cols=81  Identities=22%  Similarity=0.333  Sum_probs=54.9

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEE--EEEECCeEEEEEEEeCCCccccc-c--chhhhhcCCCE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGEKIKLQIWDTAGQERFR-A--VTRSYYRGAAG  161 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~l~i~D~~g~~~~~-~--~~~~~~~~~~~  161 (173)
                      .+|+++|...+||||+.+....+-.+.+   |.-.+-..+  .-.+.+.-+.+++||.|||-.+- .  -....++.+-+
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPne---TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA  104 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNE---TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA  104 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCc---eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence            4599999999999999888776543322   222211111  11234466889999999996542 2  12456889999


Q ss_pred             EEEEEeCCC
Q psy13826        162 ALMVIDVSH  170 (173)
Q Consensus       162 ~ilv~d~t~  170 (173)
                      +|+|.|..+
T Consensus       105 LifvIDaQd  113 (347)
T KOG3887|consen  105 LIFVIDAQD  113 (347)
T ss_pred             EEEEEechH
Confidence            999999865

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.73  E-value=7.8e-05  Score=57.25  Aligned_cols=60  Identities=22%  Similarity=0.313  Sum_probs=36.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCC-CC-c--ee--eeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PH-T--IG--VEFGTRIIEVHGEKIKLQIWDTAGQERFR  149 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~-~~-t--~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~~  149 (173)
                      -.++++|++|||||||+|.+.+....... .+ +  .|  .+.....+.+.+.   ..++||||...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            46899999999999999999976533211 00 0  11  1222233334322   2488999986543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd04155 Arl3 Arl3 subfamily

Probab=97.72  E-value=4.8e-05  Score=53.44  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=29.5

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ..+||+++|++|+|||+|++++....+.. +.+|.+.
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~   48 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGF   48 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCc
Confidence            46899999999999999999999876643 5566664

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.70  E-value=3.6e-05  Score=54.78  Aligned_cols=35  Identities=26%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT   47 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t   47 (173)
                      +..++|+++|++|+|||||+++++...+...+.++
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~   50 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKT   50 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC
Confidence            45679999999999999999999988654443333

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.69  E-value=6e-05  Score=53.58  Aligned_cols=44  Identities=20%  Similarity=0.197  Sum_probs=36.2

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEee
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVS   57 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s   57 (173)
                      ...+||+++|..++|||++++++..+.+.. ..||.++....+..
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~~i~~   55 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIEEIKY   55 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEEEEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccceeee
Confidence            457899999999999999999999887665 77888877655443

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00053 DYNc Dynamin, GTPase

Probab=97.67  E-value=0.00034  Score=52.29  Aligned_cols=27  Identities=22%  Similarity=0.417  Sum_probs=23.9

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCC
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      -....++++|+.|+||||+++.+++..
T Consensus        24 i~~p~i~vvG~~~~GKSt~l~~i~g~~   50 (240)
T smart00053       24 LDLPQIAVVGGQSAGKSSVLENFVGRD   50 (240)
T ss_pred             CCCCeEEEEcCCCccHHHHHHHHhCCC
Confidence            445689999999999999999999875

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.67  E-value=0.00018  Score=58.04  Aligned_cols=86  Identities=27%  Similarity=0.382  Sum_probs=62.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCC-----------C--CCCCceeeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFM-----------P--DCPHTIGVEFGTRIIEV-----HGEKIKLQIWDTAGQE  146 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~-----------~--~~~~t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~  146 (173)
                      ..-+..++-.-.-|||||..|++...-.           +  +.....|+++....+.+     +++.+.|++.||||+-
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV   87 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   87 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence            3456788888899999999999854211           1  11123344444444333     4578999999999999


Q ss_pred             ccccchhhhhcCCCEEEEEEeCCC
Q psy13826        147 RFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       147 ~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .|.......+..|.+.+|++|.++
T Consensus        88 DFsYEVSRSLAACEGalLvVDAsQ  111 (603)
T COG0481          88 DFSYEVSRSLAACEGALLVVDASQ  111 (603)
T ss_pred             ceEEEehhhHhhCCCcEEEEECcc
Confidence            998777777889999999999986

>PRK00098 GTPase RsgA; Reviewed

Probab=97.66  E-value=0.00012  Score=56.50  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=20.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      .++++|.+|||||||+|.+++..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            58899999999999999998764

>KOG0082|consensus

Probab=97.64  E-value=0.00019  Score=56.20  Aligned_cols=38  Identities=16%  Similarity=0.348  Sum_probs=33.2

Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        134 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       134 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      ...+.++|.+||..-+.-|.+++.+++++|+|.++++-
T Consensus       194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeY  231 (354)
T KOG0082|consen  194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEY  231 (354)
T ss_pred             CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhh
Confidence            36788999999988788888999999999999998763

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=97.62  E-value=6.6e-05  Score=52.39  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcc------cccCcccccce
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQK------YFLGLQLTQDY   50 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~------~~~~~~~t~~~   50 (173)
                      +|+++|++|||||+|+.++....      +...+.+|++.
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~   40 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGL   40 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCcccc
Confidence            48999999999999999997542      23345556443

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=97.61  E-value=0.00013  Score=59.45  Aligned_cols=88  Identities=17%  Similarity=0.149  Sum_probs=56.1

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCC---CCCCCC--c--eeeeeEEE--------EE---EECC------------
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF---MPDCPH--T--IGVEFGTR--------II---EVHG------------  132 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~---~~~~~~--t--~~~~~~~~--------~~---~~~~------------  132 (173)
                      .+..+.|.++|.-..|||||+..+.+-..   .++...  |  .|......        ..   ....            
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            35568999999999999999999986422   111100  1  11110000        00   0000            


Q ss_pred             e----EEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        133 E----KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       133 ~----~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .    ...+.+.|+||++.|-...-.....+|++++|+|.++
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~  152 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANE  152 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            0    1357889999999886555556778999999999986

>PRK15494 era GTPase Era; Provisional

Probab=97.61  E-value=0.00011  Score=57.82  Aligned_cols=37  Identities=30%  Similarity=0.309  Sum_probs=29.6

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccc---cCcccccce
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF---LGLQLTQDY   50 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~---~~~~~t~~~   50 (173)
                      ..+||+++|++|||||||+++++.+.+.   ....+|.+.
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~   90 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSI   90 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCc
Confidence            4569999999999999999999988874   344555443

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.00032  Score=59.79  Aligned_cols=88  Identities=18%  Similarity=0.249  Sum_probs=64.4

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCC--------------CC--CCCCceeeeeEEEEEEECCe-EEEEEEEeCCCc
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF--------------MP--DCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQ  145 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~--------------~~--~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~g~  145 (173)
                      ....-+|.++|.-.+|||||..+++-..-              .+  +.....|+++.........+ .+.+++.||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            34566899999999999999999984321              10  01122355555555555444 478889999999


Q ss_pred             cccccchhhhhcCCCEEEEEEeCCC
Q psy13826        146 ERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       146 ~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      -+|.......++-+|++|+|+|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdave  111 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVE  111 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCC
Confidence            9999888888999999999999753

>smart00275 G_alpha G protein alpha subunit

Probab=97.59  E-value=0.00033  Score=55.12  Aligned_cols=52  Identities=17%  Similarity=0.275  Sum_probs=40.6

Q ss_pred             CCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        116 PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       116 ~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      .||.|....  .+.+  ..+.+.+||.+|+...+..|..++.+++++|+|.|+++.
T Consensus       169 ~~T~Gi~~~--~f~~--~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~  220 (342)
T smart00275      169 VPTTGIQET--AFIV--KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEY  220 (342)
T ss_pred             CCccceEEE--EEEE--CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECccc
Confidence            355564432  2333  346688999999999999999999999999999999973

Subunit of G proteins that contains the guanine nucleotide binding site

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.58  E-value=3.7e-05  Score=57.44  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=18.6

Q ss_pred             EEEEEeCCCccccccchhhhh--------cCCCEEEEEEeCC
Q psy13826        136 KLQIWDTAGQERFRAVTRSYY--------RGAAGALMVIDVS  169 (173)
Q Consensus       136 ~l~i~D~~g~~~~~~~~~~~~--------~~~~~~ilv~d~t  169 (173)
                      .+.|+|||||.++-..++...        ...-+++++.|..
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~  133 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSS  133 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecc
Confidence            678999999987654443322        3455788888865

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0458|consensus

Probab=97.57  E-value=0.00052  Score=56.49  Aligned_cols=89  Identities=18%  Similarity=0.192  Sum_probs=62.2

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCC-----------------------------CCCCceeeeeEEEEEEECC
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-----------------------------DCPHTIGVEFGTRIIEVHG  132 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~  132 (173)
                      .....+.++++|.-.+|||+|+-+++..--..                             ..+...|++.......++.
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            34467899999999999999999987541100                             1112234444444555556


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      ....+.|.|.||+..|..-.-.-...||+.+||+|.+-
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~  290 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST  290 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence            66778899999988886544445567999999999874

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=97.55  E-value=6.8e-05  Score=54.61  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=27.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT   47 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t   47 (173)
                      .|+++|++++|||+|+.++..++|...+.++
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~   32 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI   32 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE
Confidence            6899999999999999999999887765544

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01878 HflX HflX subfamily

Probab=97.53  E-value=0.00013  Score=52.94  Aligned_cols=27  Identities=26%  Similarity=0.315  Sum_probs=24.3

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ..++|+++|++|||||||+++++.+.+
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~   66 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADV   66 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchh
Confidence            356999999999999999999998875

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.53  E-value=9.3e-05  Score=53.60  Aligned_cols=28  Identities=18%  Similarity=0.299  Sum_probs=24.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLG   43 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~   43 (173)
                      +||+++|++|+|||||++.++...+...
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~   29 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEE   29 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence            6999999999999999999998665443

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01850 CDC_Septin CDC/Septin

Probab=97.52  E-value=0.00019  Score=54.78  Aligned_cols=30  Identities=23%  Similarity=0.620  Sum_probs=26.3

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLG   43 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~   43 (173)
                      ..++|+++|++|+|||||+++++...+...
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~   32 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPS   32 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccc
Confidence            468999999999999999999998877543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.51  E-value=7.1e-05  Score=51.79  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD   49 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~   49 (173)
                      +|+++|++|+|||||++.++++.+.....++.+
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~   33 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPG   33 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCC
Confidence            478999999999999999997777665555543

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=97.50  E-value=9.7e-05  Score=51.57  Aligned_cols=25  Identities=36%  Similarity=0.442  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      +|+++|++|||||||++++..+.+.
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~   26 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPE   26 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCc
Confidence            7999999999999999999998874

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK13768 GTPase; Provisional

Probab=97.42  E-value=0.00023  Score=53.71  Aligned_cols=36  Identities=22%  Similarity=0.287  Sum_probs=24.9

Q ss_pred             EEEEEeCCCcccc---ccchhhhhcC-----CCEEEEEEeCCCC
Q psy13826        136 KLQIWDTAGQERF---RAVTRSYYRG-----AAGALMVIDVSHV  171 (173)
Q Consensus       136 ~l~i~D~~g~~~~---~~~~~~~~~~-----~~~~ilv~d~t~~  171 (173)
                      .+.+||++|+.+.   +..++.+++.     ++++++++|.+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~  141 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLA  141 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHh
Confidence            5789999998653   3333333332     8999999998653

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.41  E-value=0.00051  Score=53.28  Aligned_cols=82  Identities=23%  Similarity=0.195  Sum_probs=50.4

Q ss_pred             EEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc----ccchhh---hhcCCC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----RAVTRS---YYRGAA  160 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----~~~~~~---~~~~~~  160 (173)
                      |-++|-|++|||||++.+...+.. .+|+-|.-.. ..-.+.+ ...-.+.+-|.||.-.-    ..+-..   .+..+.
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~P-nLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVP-NLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCcccCCccccccC-cccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            349999999999999999877532 3343222111 1122333 22235678899985321    122233   356799


Q ss_pred             EEEEEEeCCCCC
Q psy13826        161 GALMVIDVSHVK  172 (173)
Q Consensus       161 ~~ilv~d~t~~~  172 (173)
                      +++.|.|++..+
T Consensus       240 vL~hviD~s~~~  251 (369)
T COG0536         240 VLLHVIDLSPID  251 (369)
T ss_pred             eeEEEEecCccc
Confidence            999999998654

>KOG0083|consensus

Probab=97.41  E-value=1.8e-05  Score=53.10  Aligned_cols=47  Identities=23%  Similarity=0.396  Sum_probs=33.6

Q ss_pred             EEEcCCCCchhhhhHHhhhcccccC-cccccceeEEEEeeccCcccch
Q psy13826         19 IIIGDMGVGKSCLLHQFTEQKYFLG-LQLTQDYVCLRLVSTSQPITRK   65 (173)
Q Consensus        19 ~~~g~~~vgkt~l~~~~~~~~~~~~-~~~t~~~~~~~~~s~~~~~~~k   65 (173)
                      +++||+++|||||+.||-.+.|... +.+|+|-.+...+....+...+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvk   48 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVK   48 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEE
Confidence            3789999999999999999999654 5566776665444444443333

>KOG4423|consensus

Probab=97.41  E-value=1.1e-05  Score=57.09  Aligned_cols=40  Identities=28%  Similarity=0.536  Sum_probs=37.0

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..++|++++|+.|||||+++.||++..|+.+|..|++..+
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdf   62 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDF   62 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHH
Confidence            5678999999999999999999999999999999988665

>KOG3859|consensus

Probab=97.37  E-value=0.00048  Score=52.14  Aligned_cols=61  Identities=26%  Similarity=0.500  Sum_probs=46.0

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCC----CceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP----HTIGVEFGTRIIEVHGEKIKLQIWDTAG  144 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~l~i~D~~g  144 (173)
                      ...|+|+.+|..|.|||+|+..+.+-.|..+..    |++.....+..+.-.+.+++|.|.||.|
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            467899999999999999999999988876543    3333333333333367788999999998

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=97.36  E-value=0.00017  Score=50.21  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLG   43 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~   43 (173)
                      .|+++|++|+|||||++++..+.+...
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~   28 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAG   28 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccc
Confidence            589999999999999999999988664

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.35  E-value=0.00029  Score=49.83  Aligned_cols=52  Identities=31%  Similarity=0.404  Sum_probs=32.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT  142 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~  142 (173)
                      ||++-|++|+||||++++++..- .....+.-|  +.+..+.-++.++-+.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l-~~~~~~v~G--f~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL-KKKGLPVGG--FYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH-HHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh-hccCCccce--EEeecccCCCceEEEEEEEC
Confidence            68999999999999999988542 111122333  33444444566666666666

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.35  E-value=0.0002  Score=47.14  Aligned_cols=22  Identities=41%  Similarity=0.622  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      +|+++|.+|+|||||++.++..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999975

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=97.31  E-value=0.00035  Score=55.14  Aligned_cols=40  Identities=25%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccc--cCcccccceeEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYF--LGLQLTQDYVCLR   54 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~--~~~~~t~~~~~~~   54 (173)
                      .++|+++|+++||||||+++++...+.  ....+|.+.....
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~  230 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR  230 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE
Confidence            469999999999999999999987653  2345666654433

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.30  E-value=0.00027  Score=46.80  Aligned_cols=22  Identities=41%  Similarity=0.564  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .|++.|.+||||||+++.++..
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999875

...

>cd04171 SelB SelB subfamily

Probab=97.24  E-value=0.00024  Score=49.20  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -|+++|+++||||||+++++.
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~   22 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTG   22 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhC
Confidence            478999999999999999985

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=97.23  E-value=0.0003  Score=49.07  Aligned_cols=25  Identities=32%  Similarity=0.558  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ++|+++|.++||||+|+++++..+.
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~   25 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQ   25 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSE
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCc
Confidence            4899999999999999999997764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=97.22  E-value=0.00031  Score=50.57  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhh--cccccCc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE--QKYFLGL   44 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~--~~~~~~~   44 (173)
                      +|+++|+++||||||+.+|+.  +.|...+
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~   33 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENE   33 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccC
Confidence            799999999999999999997  6665543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.21  E-value=0.0003  Score=49.27  Aligned_cols=22  Identities=32%  Similarity=0.679  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -++++|.+|||||||++.+...
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999876

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01895 EngA2 EngA2 subfamily

Probab=97.21  E-value=0.00027  Score=49.16  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ++|+++|++|+|||+|+++++...+
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~~~   27 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGEER   27 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCccc
Confidence            6899999999999999999998754

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=97.20  E-value=0.00031  Score=48.13  Aligned_cols=25  Identities=36%  Similarity=0.599  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      +||+++|++|+|||++++++....+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~   26 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDR   26 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCce
Confidence            4899999999999999999997764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG1144|consensus

Probab=97.20  E-value=0.00068  Score=57.46  Aligned_cols=85  Identities=21%  Similarity=0.271  Sum_probs=57.8

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCC----ceeeeeEEEE--------EEECCe----EEEEEEEeCCCccccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH----TIGVEFGTRI--------IEVHGE----KIKLQIWDTAGQERFR  149 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~----t~~~~~~~~~--------~~~~~~----~~~l~i~D~~g~~~~~  149 (173)
                      ..=|+++|.-..|||-|+..+-+.+.......    .+|.+|....        +.-+.+    .--+.+.||+|++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            34589999999999999999887544332222    2333332211        000011    1235678999999999


Q ss_pred             cchhhhhcCCCEEEEEEeCCC
Q psy13826        150 AVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       150 ~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .++...-.-||.+|+|+|+..
T Consensus       555 nlRsrgsslC~~aIlvvdImh  575 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMH  575 (1064)
T ss_pred             hhhhccccccceEEEEeehhc
Confidence            999999999999999999863

>KOG0096|consensus

Probab=97.17  E-value=0.00072  Score=48.21  Aligned_cols=39  Identities=21%  Similarity=0.369  Sum_probs=36.0

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+|++++||.|.|||+.+.|...++|...+.+|.|...
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~   47 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEV   47 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEE
Confidence            467999999999999999999999999999999988654

>cd04163 Era Era subfamily

Probab=97.16  E-value=0.00041  Score=47.77  Aligned_cols=26  Identities=38%  Similarity=0.379  Sum_probs=23.0

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ..+|+++|++|+|||++++++....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~   28 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKI   28 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCce
Confidence            36899999999999999999987654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=97.16  E-value=0.00053  Score=55.76  Aligned_cols=26  Identities=42%  Similarity=0.563  Sum_probs=23.4

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      ..+||+++|++|||||||+++++...
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~  227 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQD  227 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34699999999999999999999875

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG0410|consensus

Probab=97.16  E-value=0.0009  Score=51.71  Aligned_cols=86  Identities=21%  Similarity=0.203  Sum_probs=50.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE---------RFRAVTRSY  155 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~---------~~~~~~~~~  155 (173)
                      ...-|.++|=.|+|||||++.+.......+..-....+............ .+-+-||-|--         .|+... .-
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATL-ee  254 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATL-EE  254 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHH-HH
Confidence            34568999999999999999998554332222111111112222232222 23456998832         122211 23


Q ss_pred             hcCCCEEEEEEeCCCCC
Q psy13826        156 YRGAAGALMVIDVSHVK  172 (173)
Q Consensus       156 ~~~~~~~ilv~d~t~~~  172 (173)
                      ...+|.++-|.|+++|+
T Consensus       255 VaeadlllHvvDiShP~  271 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPN  271 (410)
T ss_pred             HhhcceEEEEeecCCcc
Confidence            56799999999999985

>PRK08118 topology modulation protein; Reviewed

Probab=97.15  E-value=0.0004  Score=49.05  Aligned_cols=22  Identities=50%  Similarity=0.699  Sum_probs=20.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ||+++|++|+|||||...+...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999865

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.13  E-value=0.00077  Score=46.25  Aligned_cols=54  Identities=15%  Similarity=0.254  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEEeeccCcccchhhhhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL   71 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~~s~~~~~~~k~l~~~~   71 (173)
                      ||+++|+.|+|||+|++++...+........+.+. -..++.....-..+++...
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~-~~~IDTPGEyiE~~~~y~a   56 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYY-DNTIDTPGEYIENPRFYHA   56 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcCccceeEec-ccEEECChhheeCHHHHHH
Confidence            89999999999999999999876643332233322 3445665555555544433

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>KOG1954|consensus

Probab=97.09  E-value=0.0031  Score=49.72  Aligned_cols=34  Identities=15%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD  114 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~  114 (173)
                      ..++...-|+++|.-..||||+++.++..+|+.-
T Consensus        53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~   86 (532)
T KOG1954|consen   53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGL   86 (532)
T ss_pred             cccccCceEEEEeccccchhHHHHHHHhCCCCcc
Confidence            4566677899999999999999999999998753

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.09  E-value=0.0005  Score=49.11  Aligned_cols=22  Identities=32%  Similarity=0.659  Sum_probs=20.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ||+++|+||+||||+..+++..
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999876

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.07  E-value=0.0018  Score=50.64  Aligned_cols=86  Identities=21%  Similarity=0.266  Sum_probs=56.9

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCC--C-------CC----------------------CCceeeeeEEEEEEECC
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFM--P-------DC----------------------PHTIGVEFGTRIIEVHG  132 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~--~-------~~----------------------~~t~~~~~~~~~~~~~~  132 (173)
                      ...++++..|.-.-|||||+-|++.+.-.  +       ..                      +...|+++...-..+.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            45789999999999999999999876311  0       00                      01113333222222334


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCC
Q psy13826        133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS  169 (173)
Q Consensus       133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t  169 (173)
                      .+-++.|-||||++.|..-...--..||+.|+++|.-
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR  120 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR  120 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc
Confidence            4457888999999988654444456799999999973

>PRK09866 hypothetical protein; Provisional

Probab=97.07  E-value=0.0016  Score=54.95  Aligned_cols=155  Identities=15%  Similarity=0.151  Sum_probs=0.0

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccC-cccc-cceeEEEEeeccCcccchhhhhhhhh----ccccCCCCCcceeeEE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLG-LQLT-QDYVCLRLVSTSQPITRKNLLWALVS----KMSSSGQYSYSYIFKY   89 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~-~~~t-~~~~~~~~~s~~~~~~~k~l~~~~~~----~~~~~~~~~~~~~~ki   89 (173)
                      +.++++|++|+|||+|++.++....... ..++ .-....+-............-..+++    ..+..-...+...+..
T Consensus        70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl~e  149 (741)
T PRK09866         70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTD  149 (741)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHHHH


Q ss_pred             EEEeCCCCChHHHHHHHHhCCCCCCC--------------------------------------CCceeeeeEEEEEEEC
Q psy13826         90 IIIGDMGVGKSCLLHQFTEQKFMPDC--------------------------------------PHTIGVEFGTRIIEVH  131 (173)
Q Consensus        90 ~l~G~~~vGKssl~~~~~~~~~~~~~--------------------------------------~~t~~~~~~~~~~~~~  131 (173)
                      ..--++.  .+.|+.++-.+.-.+..                                      -|.+.+++ ...-.-.
T Consensus       150 ~~~ad~d--~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f-~hl~g~l  226 (741)
T PRK09866        150 VLEIDKD--MRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEF-VHLAGLE  226 (741)
T ss_pred             HHhcCcc--HHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeee-eeccccc


Q ss_pred             CeEEEEEEEeCCCccc-----cccchhhhhcCCCEEEEEEeCCCCCC
Q psy13826        132 GEKIKLQIWDTAGQER-----FRAVTRSYYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       132 ~~~~~l~i~D~~g~~~-----~~~~~~~~~~~~~~~ilv~d~t~~~S  173 (173)
                      ....++.+.||||-..     ........+..+|+|++|.|.++.-+
T Consensus       227 ~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s  273 (741)
T PRK09866        227 SYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKS  273 (741)
T ss_pred             cccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCC

>TIGR00436 era GTP-binding protein Era

Probab=97.06  E-value=0.00047  Score=52.45  Aligned_cols=25  Identities=44%  Similarity=0.481  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      +|+++|.+|||||||+++++...+.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~   26 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKIS   26 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEe
Confidence            7999999999999999999988763

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.04  E-value=0.00059  Score=46.42  Aligned_cols=20  Identities=35%  Similarity=0.572  Sum_probs=18.5

Q ss_pred             EEEEeCCCCChHHHHHHHHh
Q psy13826         89 YIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~  108 (173)
                      |+++|++|+||||+++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999983

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		9e-39
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		9e-38
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		6e-30
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		7e-30
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-29
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-29
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		3e-27
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		5e-27
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-25
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		6e-24
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		7e-24
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		7e-24
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		8e-24
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-23
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-23
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-23
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-23
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		5e-23
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		6e-23
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		6e-23
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		7e-23
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		9e-23
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-22
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-22
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		4e-22
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		4e-22
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		5e-22
4fmc_B	171	Espg-Rab1 Complex Length = 171		5e-22
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		5e-22
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		6e-22
4fmc_F	117	Espg-Rab1 Complex Length = 117		6e-22
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		7e-22
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		7e-22
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		7e-22
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		8e-22
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-21
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-21
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-21
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-21
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-21
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		4e-21
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		5e-21
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-20
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		6e-20
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		7e-20
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		8e-20
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-19
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		3e-18
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-17
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-17
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		4e-17
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		5e-17
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-16
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-16
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		7e-16
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		9e-16
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		9e-16
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-15
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-15
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-15
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-15
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-15
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		5e-15
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-14
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-14
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-14
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-14
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-14
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		8e-14
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-13
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-13
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-13
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		3e-13
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-13
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-13
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		4e-13
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-13
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		6e-13
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		8e-13
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		9e-13
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-12
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-12
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-12
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-12
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-12
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-12
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		4e-12
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		5e-12
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		6e-12
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		7e-12
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		7e-12
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		7e-12
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		7e-12
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		8e-12
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		9e-12
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-11
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-11
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-11
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-11
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-11
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		6e-09
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		9e-09
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-08
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-08
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-08
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-08
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		4e-08
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		6e-08
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-07
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-07
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-07
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-07
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-07
1byu_A	216	Canine Gdp-Ran Length = 216		5e-07
2bku_A	177	Kap95p:rangtp Complex Length = 177		5e-07
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		5e-07
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		5e-07
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		7e-07
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		7e-07
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		7e-07
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		7e-07
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		8e-07
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		9e-07
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		9e-07
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-06
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-06
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-06
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		2e-06
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-06
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		3e-06
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		4e-06
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-06
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-06
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		4e-06
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-06
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		6e-06
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		6e-06
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-06
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		6e-06
3icq_B	171	Karyopherin Nuclear State Length = 171		6e-06
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		6e-06
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		7e-06
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		8e-06
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		9e-06
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-05
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-05
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-05
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-05
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-05
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-05
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-05
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-05
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		5e-05
1s1c_A	183	Crystal Structure Of The Complex Between The Human		5e-05
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		5e-05
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		5e-05
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		5e-05
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		5e-05
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		5e-05
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		5e-05
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		6e-05
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		6e-05
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		6e-05
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		6e-05
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		6e-05
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		6e-05
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		6e-05
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		6e-05
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		6e-05
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		6e-05
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		6e-05
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		6e-05
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		6e-05
1mh1_A	186	Small G-Protein Length = 186		6e-05
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		7e-05
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		7e-05
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		7e-05
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		7e-05
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		7e-05
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		7e-05
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		7e-05
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		8e-05
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		8e-05
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		9e-05
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-04
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		2e-04
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-04
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		2e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-04
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		3e-04
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		3e-04
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		3e-04
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		3e-04
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		3e-04
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-04
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		3e-04
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-04
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		4e-04
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		4e-04
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		4e-04
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		5e-04
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		5e-04
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-04
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		5e-04
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		5e-04
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		5e-04
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		5e-04
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		5e-04
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		5e-04
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		5e-04
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		5e-04
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		5e-04
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		5e-04
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		5e-04
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		5e-04
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		5e-04
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		5e-04
4q21_A	189	Molecular Switch For Signal Transduction: Structura		5e-04
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-04
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		5e-04
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		5e-04
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		5e-04
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		5e-04
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		6e-04
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		6e-04
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		6e-04
1wq1_R	166	Ras-Rasgap Complex Length = 166		6e-04
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		6e-04
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-04
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		6e-04
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		6e-04
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		6e-04
6q21_A	171	Molecular Switch For Signal Transduction: Structura		6e-04
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		6e-04
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		6e-04
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		6e-04
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		6e-04
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		6e-04
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		6e-04
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		6e-04
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		6e-04
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		6e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		6e-04
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		6e-04
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-04
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		7e-04
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		7e-04
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-04
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-04
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		7e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		7e-04
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		7e-04
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		7e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		8e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		8e-04
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		8e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		9e-04

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  155 bits (392), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 74/77 (96%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQERFRAVT
Sbjct: 22  GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT 81
Query: 153 RSYYRGAAGALMVIDVS 169
           RSYYRGAAGALMV D++
Sbjct: 82  RSYYRGAAGALMVYDIT 98

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  152 bits (384), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 69/77 (89%), Positives = 73/77 (94%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDTAGQ RFRAVT
Sbjct: 37  GDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVT 96
Query: 153 RSYYRGAAGALMVIDVS 169
           RSYYRGAAGALMV D++
Sbjct: 97  RSYYRGAAGALMVYDIT 113

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 66/77 (85%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWDTAGQERFR+VT
Sbjct: 18  GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT 77
Query: 153 RSYYRGAAGALMVIDVS 169
           RSYYRGAAGAL+V D++
Sbjct: 78  RSYYRGAAGALLVYDIT 94

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  126 bits (316), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 56/77 (72%), Positives = 66/77 (85%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWDTAGQERFR+VT
Sbjct: 17  GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT 76
Query: 153 RSYYRGAAGALMVIDVS 169
           RSYYRGAAGAL+V D++
Sbjct: 77  RSYYRGAAGALLVYDIT 93

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 64/77 (83%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  G GKSCLLHQF E KF  D  HTIGVEFG+R++ V G+ +KLQIWDTAGQERFR+VT
Sbjct: 32  GSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT 91
Query: 153 RSYYRGAAGALMVIDVS 169
           RSYYRGAAGAL+V D++
Sbjct: 92  RSYYRGAAGALLVYDIT 108

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 65/77 (84%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWDTAG ERFR+VT
Sbjct: 15  GNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVT 74
Query: 153 RSYYRGAAGALMVIDVS 169
           RSYYRGAAGAL+V D++
Sbjct: 75  RSYYRGAAGALLVYDIT 91

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 65/77 (84%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL QFT+++F P    TIGVEFG R+I + G++IKLQIWDTAGQE FR++T
Sbjct: 17  GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT 76
Query: 153 RSYYRGAAGALMVIDVS 169
           RSYYRGAAGAL+V D++
Sbjct: 77  RSYYRGAAGALLVYDIT 93

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 65/77 (84%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL QFT+++F P    TIGVEFG R++ + G++IKLQIWDTAGQE FR++T
Sbjct: 28  GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT 87
Query: 153 RSYYRGAAGALMVIDVS 169
           RSYYRGAAGAL+V D++
Sbjct: 88  RSYYRGAAGALLVYDIT 104

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 61/77 (79%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS LL +FT+ +F  D   TIGVEF TR +E+ G++IK QIWDTAGQER+RA+T
Sbjct: 20  GDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT 79
Query: 153 RSYYRGAAGALMVIDVS 169
            +YYRGA GAL+V D+S
Sbjct: 80  SAYYRGAVGALIVYDIS 96

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  106 bits (265), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQIWDTAGQERFR +T
Sbjct: 10  GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT 69
Query: 153 RSYYRGAAGALMVIDVSH 170
            +YYRGA G ++V D++ 
Sbjct: 70  TAYYRGAXGIILVYDITD 87

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQIWDTAGQERFR +T
Sbjct: 10  GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT 69
Query: 153 RSYYRGAAGALMVIDVSH 170
            +YYRGA G ++V D++ 
Sbjct: 70  TAYYRGAMGIILVYDITD 87

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 58/77 (75%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS LL +FT  +F  +   TIGVEF TR IEV  +KIK QIWDTAG ER+RA+T
Sbjct: 17  GDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAIT 76
Query: 153 RSYYRGAAGALMVIDVS 169
            +YYRGA GAL+V D+S
Sbjct: 77  SAYYRGAVGALIVYDIS 93

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  106 bits (264), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQ+WDTAGQERFR +T
Sbjct: 10  GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 69
Query: 153 RSYYRGAAGALMVIDVSH 170
            +YYRGA G ++V DV+ 
Sbjct: 70  TAYYRGAXGIILVYDVTD 87

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 59/77 (76%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAGQER+RA+T
Sbjct: 27  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAIT 86
Query: 153 RSYYRGAAGALMVIDVS 169
            +YYRGA GAL+V D++
Sbjct: 87  SAYYRGAVGALLVYDIA 103

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQ+WDTAGQERFR +T
Sbjct: 27  GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 86
Query: 153 RSYYRGAAGALMVIDVSH 170
            +YYRGA G ++V DV+ 
Sbjct: 87  TAYYRGAMGIILVYDVTD 104

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQ+WDTAGQERFR +T
Sbjct: 14  GDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT 73
Query: 153 RSYYRGAAGALMVIDVSH 170
            +YYRGA G ++V DV+ 
Sbjct: 74  TAYYRGAMGIILVYDVTD 91

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 59/77 (76%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAGQER+RA+T
Sbjct: 36  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAIT 95
Query: 153 RSYYRGAAGALMVIDVS 169
            +YYRGA GAL+V D++
Sbjct: 96  SAYYRGAVGALLVYDIA 112

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAGQER+R +T
Sbjct: 12  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT 71
Query: 153 RSYYRGAAGALMVIDVS 169
            +YYRGA GAL+V D++
Sbjct: 72  SAYYRGAVGALLVYDIA 88

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  103 bits (256), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 12  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 71
Query: 153 RSYYRGAAGALMVIDVS 169
            +YYRGA GAL+V D++
Sbjct: 72  SAYYRGAVGALLVYDIA 88

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  103 bits (256), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 15  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 74
Query: 153 RSYYRGAAGALMVIDVS 169
            +YYRGA GAL+V D++
Sbjct: 75  SAYYRGAVGALLVYDIA 91

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 18  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 77
Query: 153 RSYYRGAAGALMVIDVS 169
            +YYRGA GAL+V D++
Sbjct: 78  SAYYRGAVGALLVYDIA 94

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  102 bits (255), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 60/80 (75%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGK+C+L +F+E  F      TIG++F  R IE+ G++IKLQIWDTAGQERFR +T
Sbjct: 15  GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 74
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            +YYRGA G ++V D+++ K
Sbjct: 75  TAYYRGAMGIMLVYDITNEK 94

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDTAG ER+RA+T
Sbjct: 36  GDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT 95
Query: 153 RSYYRGAAGALMVIDVS 169
            +YYRGA GAL+V D++
Sbjct: 96  SAYYRGAVGALLVYDIA 112

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 60/80 (75%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGK+C+L +F+E  F      TIG++F  R IE+ G++IKLQIWDTAGQERFR +T
Sbjct: 13  GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 72
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            +YYRGA G ++V D+++ K
Sbjct: 73  TAYYRGAMGIMLVYDITNEK 92

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI-KLQIWDTAGQERFRAV 151
           GD GVGKS LL +FT  +F  +   TIGVEF T+ I++   KI K QIWDTAGQER+RA+
Sbjct: 14  GDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAI 73
Query: 152 TRSYYRGAAGALMVIDVS 169
           T +YYRGA GAL+V D++
Sbjct: 74  TSAYYRGAVGALLVYDIT 91

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 6   GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 65
Query: 153 RSYYRGAAGALMVIDVSH 170
            SYYRGA G ++V DV+ 
Sbjct: 66  SSYYRGAHGIIVVYDVTD 83

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 13  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 72
Query: 153 RSYYRGAAGALMVIDVSH 170
            SYYRGA G ++V DV+ 
Sbjct: 73  SSYYRGAHGIIVVYDVTD 90

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 13  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 72
Query: 153 RSYYRGAAGALMVIDVS 169
            SYYRGA G ++V DV+
Sbjct: 73  SSYYRGAHGIIVVYDVT 89

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  100 bits (248), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 16  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 75
Query: 153 RSYYRGAAGALMVIDVS 169
            SYYRGA G ++V DV+
Sbjct: 76  SSYYRGAHGIIVVYDVT 92

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 16  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 75
Query: 153 RSYYRGAAGALMVIDVS 169
            SYYRGA G ++V DV+
Sbjct: 76  SSYYRGAHGIIVVYDVT 92

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 5   GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 64
Query: 153 RSYYRGAAGALMVIDVS 169
            SYYRGA G ++V DV+
Sbjct: 65  SSYYRGAHGIIVVYDVT 81

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 23  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82
Query: 153 RSYYRGAAGALMVIDVSH 170
            SYYRGA G ++V DV+ 
Sbjct: 83  SSYYRGAHGIIVVYDVTD 100

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 15  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 74
Query: 153 RSYYRGAAGALMVIDVSH 170
            SYYRGA G ++V DV+ 
Sbjct: 75  SSYYRGAHGIIVVYDVTD 92

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 40  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 99
Query: 153 RSYYRGAAGALMVIDVS 169
            SYYRGA G ++V DV+
Sbjct: 100 SSYYRGAHGIIVVYDVT 116

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 56/78 (71%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 32  GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 91
Query: 153 RSYYRGAAGALMVIDVSH 170
            SYYRGA G ++V DV+ 
Sbjct: 92  SSYYRGAHGIIVVYDVTD 109

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 56/77 (72%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGK+CLL +F +  +      TIGV+F  R IE+ G+ IKLQIWDTAGQERFR +T
Sbjct: 23  GDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82
Query: 153 RSYYRGAAGALMVIDVS 169
            SYYRGA G ++V DV+
Sbjct: 83  SSYYRGAHGIIVVYDVT 99

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 58/78 (74%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+ GVGKSCLL +F++  +  D   TIGV+F  + +E+ G+ +KLQIWDTAGQERFR +T
Sbjct: 15  GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 74
Query: 153 RSYYRGAAGALMVIDVSH 170
            SYYRG+ G ++V DV+ 
Sbjct: 75  SSYYRGSHGIIIVYDVTD 92

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 58/78 (74%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+ GVGKSCLL +F++  +  D   TIGV+F  + +E+ G+ +KLQIWDTAGQERFR +T
Sbjct: 15  GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 74
Query: 153 RSYYRGAAGALMVIDVSH 170
            SYYRG+ G ++V DV+ 
Sbjct: 75  SSYYRGSHGIIIVYDVTD 92

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 56/77 (72%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS LL +F +  F      TIGV+F  R +E++GEK+KLQIWDTAGQERFR +T
Sbjct: 16  GDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT 75
Query: 153 RSYYRGAAGALMVIDVS 169
            +YYRG  G ++V DV+
Sbjct: 76  STYYRGTHGVIVVYDVT 92

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 58/78 (74%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+ GVGKSCLL +F++  +  D   TIGV+F  + +E+ G+ +KLQIWDTAGQERFR +T
Sbjct: 28  GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 87
Query: 153 RSYYRGAAGALMVIDVSH 170
            SYYRG+ G ++V DV+ 
Sbjct: 88  SSYYRGSHGIIIVYDVTD 105

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 59/77 (76%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+ GVGK+CL+ +FT+  F P    TIGV+F  + +E++GEK+KLQIWDTAGQERFR++T
Sbjct: 33  GNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSIT 92
Query: 153 RSYYRGAAGALMVIDVS 169
           +SYYR A   ++  D++
Sbjct: 93  QSYYRSANALILTYDIT 109

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 55/78 (70%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+ GVGKS LL +FT+  F P+   TIGV+F  + I V G K KL IWDTAGQERFR +T
Sbjct: 22  GESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT 81
Query: 153 RSYYRGAAGALMVIDVSH 170
            SYYRGA G ++V DV+ 
Sbjct: 82  PSYYRGAQGVILVYDVTR 99

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 54/77 (70%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKSCLL +F +  +      TIGV+F  R I +  + +KLQIWDTAGQERFR +T
Sbjct: 16  GDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTIT 75
Query: 153 RSYYRGAAGALMVIDVS 169
            SYYRGA G ++V DV+
Sbjct: 76  SSYYRGAHGIIIVYDVT 92

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 93.2 bits (230), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 55/77 (71%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+ GVGK+ LL +FT  +F  D   TIGVEF TR + +    +K QIWDTAG ER+RA+T
Sbjct: 17  GESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 76
Query: 153 RSYYRGAAGALMVIDVS 169
            +YYRGA GAL+V D++
Sbjct: 77  SAYYRGAVGALLVFDLT 93

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 55/77 (71%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+ GVGK+ LL +FT  +F  D   TIGVEF TR + +    +K QIWDTAG ER+RA+T
Sbjct: 32  GESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 91
Query: 153 RSYYRGAAGALMVIDVS 169
            +YYRGA GAL+V D++
Sbjct: 92  SAYYRGAVGALLVFDLT 108

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 92.8 bits (229), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 56/78 (71%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGK+ L+ +FT+  F   C  T+GV+F  + +E+ G+KI+LQIWDTAGQERF ++T
Sbjct: 33  GSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSIT 92
Query: 153 RSYYRGAAGALMVIDVSH 170
            +YYR A G ++V D++ 
Sbjct: 93  SAYYRSAKGIILVYDITK 110

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD  VGK+C++ +F    F      TIGV+F  + +E+ G+++KLQIWDTAGQERFR +T
Sbjct: 36  GDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTIT 95
Query: 153 RSYYRGAAGALMVIDVS 169
           +SYYR A GA++  D++
Sbjct: 96  QSYYRSANGAILAYDIT 112

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 151
           GD GVGK+CLL +F +  F+      T+G++F  ++++V G K+KLQ+WDTAGQERFR+V
Sbjct: 17  GDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV 76
Query: 152 TRSYYRGAAGALMVIDVSH 170
           T +YYR A   L++ DV++
Sbjct: 77  THAYYRDAHALLLLYDVTN 95

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 54/78 (69%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+  L ++ +  F P    T+G++F  + +  H ++IKLQIWDTAGQER+R +T
Sbjct: 29  GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT 88
Query: 153 RSYYRGAAGALMVIDVSH 170
            +YYRGA G L++ D+++
Sbjct: 89  TAYYRGAMGFLLMYDIAN 106

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS ++ +F E  F P+   TIG  F T+ ++   E  K  IWDTAGQERFRA+ 
Sbjct: 12  GDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALA 71
Query: 153 RSYYRGAAGALMVIDVS 169
             YYRG+A A++V D++
Sbjct: 72  PMYYRGSAAAIIVYDIT 88

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 54/78 (69%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+  L ++ +  F P    T+G++F  + +  H +++KLQIWDTAGQER+R +T
Sbjct: 30  GNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTIT 89
Query: 153 RSYYRGAAGALMVIDVSH 170
            +YYRGA G +++ D+++
Sbjct: 90  TAYYRGAMGFILMYDITN 107

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 54/78 (69%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+  L ++ +  F P    T+G++F  + I  + ++IKLQIWDTAGQER+R +T
Sbjct: 12  GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTIT 71
Query: 153 RSYYRGAAGALMVIDVSH 170
            +YYRGA G +++ D+++
Sbjct: 72  TAYYRGAMGFILMYDITN 89

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS ++ +F E  F P+   TIG  F T+ ++   E  K  IWDTAG ERFRA+ 
Sbjct: 13  GDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA 72
Query: 153 RSYYRGAAGALMVIDVS 169
             YYRG+A A++V D++
Sbjct: 73  PMYYRGSAAAIIVYDIT 89

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 50/77 (64%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS L++++   KF     HTIGVEF  R +EV G  + LQIWDTAGQERF+++ 
Sbjct: 14  GDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLR 73
Query: 153 RSYYRGAAGALMVIDVS 169
             +YRGA   L+   V 
Sbjct: 74  TPFYRGADCCLLTFSVD 90

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 52/77 (67%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD  VGKS  L +  + +F  +   T+GV+F  + + V GE+  LQ+WDTAGQERFR++ 
Sbjct: 35  GDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIA 94
Query: 153 RSYYRGAAGALMVIDVS 169
           +SY+R A G L++ DV+
Sbjct: 95  KSYFRKADGVLLLYDVT 111

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 79.3 bits (194), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS L++++   KF     HTIGVEF  + +EV G  + +QIWDTAGQERFR++ 
Sbjct: 18  GDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 77
Query: 153 RSYYRGAAGALMVIDV 168
             +YRG+   L+   V
Sbjct: 78  TPFYRGSDCCLLTFSV 93

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 79.3 bits (194), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS L++++   KF     HTIGVEF  + +EV G  + +QIWDTAGQERFR++ 
Sbjct: 14  GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 73
Query: 153 RSYYRGAAGALMVIDV 168
             +YRG+   L+   V
Sbjct: 74  TPFYRGSDCCLLTFSV 89

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS L++++   KF     HTIGVEF  + +EV G  + +QIWDTAGQERFR++ 
Sbjct: 16  GDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 75
Query: 153 RSYYRGAAGALMVIDV 168
             +YRG+   L+   V
Sbjct: 76  TPFYRGSDCCLLTFSV 91

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 52/78 (66%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+  L ++ +  F P    T+G++F  + I  + ++IKLQIWDTAG ER+R +T
Sbjct: 15  GNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTIT 74
Query: 153 RSYYRGAAGALMVIDVSH 170
            +YYRGA G ++  D+++
Sbjct: 75  TAYYRGAXGFILXYDITN 92

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +K +IWDTAGQER+ ++ 
Sbjct: 19  GDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 78
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGAA A++V DV++
Sbjct: 79  PMYYRGAAAAIIVFDVTN 96

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AV 151
           GD  VGK+CL ++F   +F      TIGV+F  R +++ GE+IK+Q+WDTAGQERFR ++
Sbjct: 27  GDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM 86
Query: 152 TRSYYRGAAGALMVIDVSHV 171
            + YYR     + V D++++
Sbjct: 87  VQHYYRNVHAVVFVYDMTNM 106

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AV 151
           GD  VGK+CL ++F   +F      TIGV+F  R +++ GE+IK+Q+WDTAGQERFR ++
Sbjct: 36  GDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM 95
Query: 152 TRSYYRGAAGALMVIDVSH 170
            + YYR     + V D ++
Sbjct: 96  VQHYYRNVHAVVFVYDXTN 114

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK-LQIWDTAGQERFRAV 151
           GD GVGK+ L+H++   K+      TIG +F T+ + V G+K+  +Q+WDTAGQERF+++
Sbjct: 15  GDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL 74
Query: 152 TRSYYRGAAGALMVIDVSH 170
             ++YRGA   ++V DV++
Sbjct: 75  GVAFYRGADCCVLVYDVTN 93

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS ++ ++ +  F  D   TIGV+F  R I+V+ E ++L +WDTAGQE F A+T
Sbjct: 12  GNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT 71
Query: 153 RSYYRGAAGALMV 165
           ++YYRGA   ++V
Sbjct: 72  KAYYRGAQACVLV 84

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 52/77 (67%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGK+ L++Q+  +KF      TIG +F T+ + V    + +QIWDTAGQERF+++ 
Sbjct: 15  GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 153 RSYYRGAAGALMVIDVS 169
            ++YRGA   ++V DV+
Sbjct: 75  VAFYRGADCCVLVFDVT 91

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 52/77 (67%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGK+ L++Q+  +KF      TIG +F T+ + V    + +QIWDTAGQERF+++ 
Sbjct: 15  GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 153 RSYYRGAAGALMVIDVS 169
            ++YRGA   ++V DV+
Sbjct: 75  VAFYRGADCCVLVFDVT 91

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 52/77 (67%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGK+ L++Q+  +KF      TIG +F T+ + V    + +QIWDTAGQERF+++ 
Sbjct: 15  GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG 74
Query: 153 RSYYRGAAGALMVIDVS 169
            ++YRGA   ++V DV+
Sbjct: 75  VAFYRGADCCVLVFDVT 91

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 56/87 (64%), Gaps = 10/87 (11%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE----------KIKLQIWDT 142
           GD GVGK+  L+++T+ KF P    T+G++F  + +  + +          K+ LQ+WDT
Sbjct: 32  GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDT 91
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
           AGQERFR++T +++R A G L++ D++
Sbjct: 92  AGQERFRSLTTAFFRDAMGFLLMFDLT 118

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+ L+ +F    F      TIG++F ++ + +    I+LQ+WDTAGQERFR++ 
Sbjct: 13  GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLI 72
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            SY R +A A++V D+++V 
Sbjct: 73  PSYIRDSAAAVVVYDITNVN 92

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 51/77 (66%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGK+ L++Q+  +KF      TIG +F T+ + V    + +QIWDTAG ERF+++ 
Sbjct: 15  GDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLG 74
Query: 153 RSYYRGAAGALMVIDVS 169
            ++YRGA   ++V DV+
Sbjct: 75  VAFYRGADCCVLVFDVT 91

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD GVGKS ++ +F +  F  +   TIG  F T+ +    E  K  IWDTAGQERF ++ 
Sbjct: 30  GDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA 89
Query: 153 RSYYRGAAGALMVIDVS 169
             YYRG+A A++V D++
Sbjct: 90  PMYYRGSAAAVIVYDIT 106

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 10/87 (11%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 142
           GD GVGK+  L+++T+ KF P    T+G++F  +  + +  G         K+ LQ+WDT
Sbjct: 18  GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
           AG ERFR++T +++R A G L++ D++
Sbjct: 78  AGLERFRSLTTAFFRDAMGFLLMFDLT 104

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 10/87 (11%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 142
           GD GVGK+  L+++T+ KF P    T+G++F  +  + +  G         K+ LQ+WDT
Sbjct: 18  GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
           AG ERFR++T +++R A G L+  D++
Sbjct: 78  AGLERFRSLTTAFFRDAXGFLLXFDLT 104

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS ++ +F    F  +   TIG  F T+ + ++   +K +IWDTAGQERF ++ 
Sbjct: 10  GEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA 69
Query: 153 RSYYRGAAGALMVIDVS 169
             YYR A  AL+V DV+
Sbjct: 70  PXYYRNAQAALVVYDVT 86

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 10/87 (11%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 142
           GD GVGK+  L+++T+ KF P    T+G++F  +  + +  G         K+ LQ+WDT
Sbjct: 18  GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
           AG ERFR++T +++R A G L+  D++
Sbjct: 78  AGLERFRSLTTAFFRDAXGFLLXFDLT 104

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 56/88 (63%), Gaps = 10/88 (11%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH----------GEKIKLQIWDT 142
           GD GVGK+ +L+Q+T+ KF      T+G++F  + +             G++I LQ+WDT
Sbjct: 18  GDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDT 77
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVSH 170
           AG ERFR++T +++R A G L++ D+++
Sbjct: 78  AGLERFRSLTTAFFRDAMGFLLLFDLTN 105

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 10/87 (11%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR--IIEVHGE--------KIKLQIWDT 142
           GD GVGK+  L+++T+ KF P    T+G++F  +  + +  G         K+ LQ+WDT
Sbjct: 18  GDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDT 77
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
           AG ERFR++T +++R A G L++ D++
Sbjct: 78  AGLERFRSLTTAFFRDAMGFLLMFDLT 104

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 52/78 (66%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+ ++ +F    F  +   TIG++F ++ + +    ++LQ+WDTAGQERFR++ 
Sbjct: 8   GEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLI 67
Query: 153 RSYYRGAAGALMVIDVSH 170
            SY R +A A++V D+++
Sbjct: 68  PSYIRDSAAAIVVYDITN 85

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+ L+ +F    F      TIG++F ++ + +    ++LQ+WDTAGQERFR++ 
Sbjct: 8   GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 67
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            SY R +  A++V D+++V 
Sbjct: 68  PSYIRDSTVAVVVYDITNVN 87

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+ L+ ++ E KF      T+G  F T+ + + G+++ L IWDTAGQERF A+ 
Sbjct: 13  GEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 153 RSYYRGAAGALMVIDVS 169
             YYR + GA++V D++
Sbjct: 73  PIYYRDSNGAILVYDIT 89

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+ L+ +F    F      TIG++F ++ + +    I+LQ+WDTAG ERFR++ 
Sbjct: 20  GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI 79
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            SY R +A A++V D+++V 
Sbjct: 80  PSYIRDSAAAVVVYDITNVN 99

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+ L+ +F    F      TIG++F ++ + +    ++LQ+WDTAGQERFR++ 
Sbjct: 9   GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 68
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            SY R +  A++V D++++ 
Sbjct: 69  PSYIRDSTVAVVVYDITNLN 88

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 14  GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 73
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 74  PXYYRGAQAAIVVYDITN 91

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 10  GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 69
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 70  PMYYRGAQAAIVVYDITN 87

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 14  GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 73
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 74  PMYYRGAQAAIVVYDITN 91

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 13  GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 73  PMYYRGAQAAIVVYDITN 90

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+ L+ +F    F      TIG++F ++ + +    ++LQ+WDTAGQERFR++ 
Sbjct: 21  GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 80
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            SY R +  A++V D+++  
Sbjct: 81  PSYIRDSTVAVVVYDITNTN 100

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 15  GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLA 74
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 75  PMYYRGAQAAIVVYDITN 92

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 13  GESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 73  PMYYRGAQAAIVVYDITN 90

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 13  GESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 73  PMYYRGAQAAIVVYDITN 90

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+ L+ ++ E KF      T+   F T+ + + G+++ L IWDTAGQERF A+ 
Sbjct: 13  GEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 153 RSYYRGAAGALMVIDVS 169
             YYR + GA++V D++
Sbjct: 73  PIYYRDSNGAILVYDIT 89

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+ L+ ++ E KF      T+   F T+ + + G+++ L IWDTAGQERF A+ 
Sbjct: 27  GEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 86
Query: 153 RSYYRGAAGALMVIDVS 169
             YYR + GA++V D++
Sbjct: 87  PIYYRDSNGAILVYDIT 103

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 13  GESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 73  PMYYRGAQAAIVVYDITN 90

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 13  GESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 73  PMYYRGAQAAIVVYDITN 90

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+ L+ +F    F      TIG++F ++ + +    ++LQ+WDTAG ERFR++ 
Sbjct: 13  GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLI 72
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            SY R +  A++V D+++V 
Sbjct: 73  PSYIRDSTVAVVVYDITNVN 92

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 13  GESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 73  PMYYRGAQAAIVVYDITN 90

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGK+ L+ +F    F      TIG++F ++ + +    ++LQ+WDTAG ERFR++ 
Sbjct: 23  GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLI 82
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            SY R +  A++V D+++V 
Sbjct: 83  PSYIRDSTVAVVVYDITNVN 102

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TI   F T+ + +    +K +IWDTAGQER+ ++ 
Sbjct: 12  GESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 71
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 72  PMYYRGAQAAIVVYDITN 89

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAG ER+ ++ 
Sbjct: 12  GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLA 71
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 72  PMYYRGAQAAIVVYDITN 89

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAG ER+ ++ 
Sbjct: 12  GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLA 71
Query: 153 RSYYRGAAGALMVIDVSH 170
             YYRGA  A++V D+++
Sbjct: 72  PMYYRGAQAAIVVYDITN 89

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIG-VEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 151
           GD GVGK+  +++  + +F  +   T+G V      ++  G  IK  +WDTAGQE+   +
Sbjct: 18  GDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL 77
Query: 152 TRSYYRGAAGALMVIDVS 169
              YY GA+GA++  DV+
Sbjct: 78  KDVYYIGASGAILFFDVT 95

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 37/115 (32%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV---------------------- 130
           G+  VGKS ++ + T+  F  +   TIG  F T ++ +                      
Sbjct: 14  GESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSIND 73
Query: 131 ---------HGE------KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
                    H         IK  IWDTAGQER+ ++   YYRGA  A++V D+S+
Sbjct: 74  DNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD  VGK+CLL  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE +  + 
Sbjct: 15  GDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQEDYNRLR 73
Query: 153 RSYYRGA 159
              YRGA
Sbjct: 74  PLSYRGA 80

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAGQE + A+ 
Sbjct: 25  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 83
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            +Y+R   G L V  ++ ++
Sbjct: 84  DNYFRSGEGFLCVFSITEME 103

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAGQE + A+ 
Sbjct: 13  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 71
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            +Y+R   G L V  ++ ++
Sbjct: 72  DNYFRSGEGFLCVFSITEME 91

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAGQE + A+ 
Sbjct: 11  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 69
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            +Y+R   G L V  ++ ++
Sbjct: 70  DNYFRSGEGFLCVFSITEME 89

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAGQE + A+ 
Sbjct: 21  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIR 79
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            +Y+R   G L V  ++ ++
Sbjct: 80  DNYFRSGEGFLCVFSITEME 99

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTAGQE +  + 
Sbjct: 13  GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQEDYNRLR 71
Query: 153 RSYYRGA 159
              YRGA
Sbjct: 72  PLSYRGA 78

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAG E + A+ 
Sbjct: 14  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIR 72
Query: 153 RSYYRGAAGALMVIDVSH 170
            +Y+R   G L+V  ++ 
Sbjct: 73  DNYFRSGEGFLLVFSITE 90

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAG E + A+ 
Sbjct: 10  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIR 68
Query: 153 RSYYRGAAGALMVIDVSH 170
            +Y+R   G L+V  ++ 
Sbjct: 69  DNYFRSGEGFLLVFSITE 86

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTAGQE +  + 
Sbjct: 13  GDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLR 71
Query: 153 RSYYRGA 159
              YRGA
Sbjct: 72  PLSYRGA 78

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD  VGK+C+L  +T  KF  D   T+   F   +  V G+ + L +WDTAGQE +  + 
Sbjct: 16  GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQEDYSRLR 74
Query: 153 RSYYRGA 159
              YRGA
Sbjct: 75  PLSYRGA 81

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  QF   +F+ D   T    +  +++ + GE++++ I DTAG E + A+ 
Sbjct: 13  GSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLEDYAAIR 71
Query: 153 RSYYRGAAGALMVIDVSHVK 172
            +Y+R   G L V  ++ ++
Sbjct: 72  DNYFRSGEGFLCVFSITEME 91

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 93  GDMGVGKSCLLHQFT----EQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD G GK+  + +      E+K++P    T+GVE    +   +   IK  +WDTAGQE+F
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVP----TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 149 RAVTRSYYRGAAGALMVIDVS 169
             +   YY  A  A+++ DV+
Sbjct: 73  GGLRDGYYIQAQCAIIMFDVT 93

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 93  GDMGVGKSCLLHQFT----EQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD G GK+  + +      E+K++P    T+GVE    +   +   IK  +WDTAGQE+F
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVP----TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 72
Query: 149 RAVTRSYYRGAAGALMVIDVS 169
             +   YY  A  A+++ DV+
Sbjct: 73  GGLRDGYYIQAQCAIIMFDVT 93

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G   VGKS L  QF E +F+     TI   F T++I V+G++  LQ+ DTAGQ+ +    
Sbjct: 11  GYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 69
Query: 153 RSYYRGAAGALMVIDVSHVK 172
           ++Y     G ++V  V+ +K
Sbjct: 70  QTYSIDINGYILVYSVTSIK 89

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 77  DGYYIQAQCAIIMFDVT 93

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 10  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 69
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 70  DGYYIQAQCAIIMFDVT 86

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLE 76
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 77  DGYYIQAQCAIIMFDVT 93

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 77  DGYYIQAQCAIIMFDVT 93

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 77  DGYYIQAQCAIIMFDVT 93

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 22  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 81
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 82  DGYYIQAQCAIIMFDVT 98

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G   VGKS L  QF E +F+     TI   F T++I V+G++  LQ+ DTAGQ+ +    
Sbjct: 13  GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 153 RSYYRGAAGALMVIDVSHVK 172
           ++Y     G ++V  V+ +K
Sbjct: 72  QTYSIDINGYILVYSVTSIK 91

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G   VGKS L  QF E +F+     TI   F T++I V+G++  LQ+ DTAGQ+ +    
Sbjct: 13  GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 153 RSYYRGAAGALMVIDVSHVK 172
           ++Y     G ++V  V+ +K
Sbjct: 72  QTYSIDINGYILVYSVTSIK 91

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G   VGKS L  QF E +F+     TI   F T++I V+G++  LQ+ DTAGQ+ +    
Sbjct: 8   GYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFP 66
Query: 153 RSYYRGAAGALMVIDVSHVK 172
           ++Y     G ++V  V+ +K
Sbjct: 67  QTYSIDINGYILVYSVTSIK 86

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE+F  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR 76
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A++  DV+
Sbjct: 77  DGYYIQAQCAIIXFDVT 93

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE++  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLR 76
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 77  DGYYIQAQCAIIMFDVT 93

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
           G GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ+R R++ R Y
Sbjct: 27  GAGKTTVLYKLKLGEVITTIP-TIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHY 81
Query: 156 YRGAAGALMVID 167
           YR   G + VID
Sbjct: 82  YRNTEGVIFVID 93

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQERFRAV 151
           GD   GK+ L   F ++ F      TIG++F  R I + G   + LQIWD  GQ     +
Sbjct: 13  GDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM 72
Query: 152 TRSYYRGAAGALMVIDVSH 170
              Y  GA G L+V D+++
Sbjct: 73  LDKYIYGAQGVLLVYDITN 91

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 93  GDMGVGKSCLLHQF----TEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD G GK+  + +     +E+K++     T+GVE    +   +   IK  +WDTAGQE+F
Sbjct: 22  GDGGTGKTTFVKRHLTGESEKKYV----ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77
Query: 149 RAVTRSYYRGAAGALMVIDVS 169
             +   YY  A  A+++ DV+
Sbjct: 78  GGLRDGYYIQAQCAIIMFDVT 98

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
           G GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ+R R++ R Y
Sbjct: 27  GAGKTTVLYKLKLGEVITTIP-TIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHY 81
Query: 156 YRGAAGALMVID 167
           YR   G + V+D
Sbjct: 82  YRNTEGVIFVVD 93

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
           G GK+ +L++    + +   P TIG    T    V  + I   +WD  GQ+R R++ R Y
Sbjct: 10  GAGKTTVLYKLKLGEVITTIP-TIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHY 64
Query: 156 YRGAAGALMVID 167
           YR   G + V+D
Sbjct: 65  YRNTEGVIFVVD 76

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAG E+F  + 
Sbjct: 19  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLR 78
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 79  DGYYIQAQCAIIMFDVT 95

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAG E+F  + 
Sbjct: 13  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLR 72
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 73  DGYYIQAQCAIIMFDVT 89

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+ 
Sbjct: 10  GARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 153 RSYYRGAAGALMVIDVSHVK 172
             Y R   G L V  +++ K
Sbjct: 69  DQYMRTGEGFLCVFAINNTK 88

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAG E+F  + 
Sbjct: 17  GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLR 76
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 77  DGYYIQAQCAIIMFDVT 93

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      TIGVE        +  +IK  +WDTAG E+F  + 
Sbjct: 12  GDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLR 71
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 72  DGYYINAQCAIIMFDVT 88

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+ 
Sbjct: 10  GAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 153 RSYYRGAAGALMVIDVSHVK 172
             Y R   G L V  +++ K
Sbjct: 69  DQYMRTGEGFLCVFAINNTK 88

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+ 
Sbjct: 10  GAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 153 RSYYRGAAGALMVIDVSHVK 172
             Y R   G L V  +++ K
Sbjct: 69  DQYMRTGEGFLCVFAINNTK 88

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      TIGVE        +  +IK  +WDTAG E+F  + 
Sbjct: 11  GDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 71  DGYYINAQCAIIMFDVT 87

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+ 
Sbjct: 10  GADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 68
Query: 153 RSYYRGAAGALMVIDVSHVK 172
             Y R   G L V  +++ K
Sbjct: 69  DQYMRTGEGFLCVFAINNTK 88

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+ 
Sbjct: 11  GADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 69
Query: 153 RSYYRGAAGALMVIDVSHVK 172
             Y R   G L V  +++ K
Sbjct: 70  DQYMRTGEGFLCVFAINNTK 89

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+ 
Sbjct: 11  GADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMR 69
Query: 153 RSYYRGAAGALMVIDVSHVK 172
             Y R   G L V  +++ K
Sbjct: 70  DQYMRTGEGFLCVFAINNTK 89

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+  + +    +F      TIGVE        +  +IK  +WDTAG E+F  + 
Sbjct: 19  GDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGGLR 78
Query: 153 RSYYRGAAGALMVIDVS 169
             YY  A  A+++ DV+
Sbjct: 79  DGYYINAQCAIIMFDVT 95

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-RAV 151
           GD+  GK+CLL  F++ +F P        E     IEV G++++L +WDTAGQE + RA 
Sbjct: 12  GDVACGKTCLLIVFSKDQF-PAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRAR 70
Query: 152 TRSY 155
             SY
Sbjct: 71  PLSY 74

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD+  GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 13  GDVACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 71
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 72  PLSYPDTDVILMCFSID 88

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 93  GDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW--DTAGQERF 148
           G+  VGKS L+  FT +  KF+ D   T GVE     + +    + ++++  DTAG + +
Sbjct: 27  GEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY 86
Query: 149 RAVTRSYYRGAAGALMVIDVSHVK 172
           +     Y+ G   A++V DVS ++
Sbjct: 87  KEQISQYWNGVYYAILVFDVSSME 110

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  QF +  F+ D   TI   + T+I  V G   +L I DTAGQE F A+   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 159 AAGALMVIDVS 169
             G L+V  ++
Sbjct: 81  GHGFLLVFAIN 91

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 32  GDGACGKTCLLIVFSKDEF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   V 
Sbjct: 91  PLSYPDTDVILMCFSVD 107

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +C  TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 75  GEGFLCVFAINNTK 88

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD G GK+ LL  F +  F      T+   +   + +V G+ + L IWDTAGQ+ +  + 
Sbjct: 41  GDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQDDYDRLR 99
Query: 153 RSYYRGAAGALMVIDVS 169
             +Y  A+  L+  DV+
Sbjct: 100 PLFYPDASVLLLCFDVT 116

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 13  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 71
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 72  PLSYPDTDVILMCFSID 88

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 12  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 71  PLSYPDTDVILMCFSID 87

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 14  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 73  PLSYPDTDVILMCFSID 89

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 16  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 74
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 75  PLSYPDTDVILMCFSID 91

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 15  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 73
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 74  PLSYPDTDVILMCFSID 90

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 17  GDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 71

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 14  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 73  PLSYPDTDVILMCFSID 89

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 29  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 83

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 32  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 91  PLSYPDTDVILMCFSID 107

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 20  GDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 74

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 11  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 65

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 14  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 73  PLSYPDTDVILMCFSID 89

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 11  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 65

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL  F++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 32  GDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 91  PLSYPDTDVILMCFSID 107

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+ LLH F +  F  +   T+  E  T   E+  ++I+L +WDT+G   +  V 
Sbjct: 14  GDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVR 72
Query: 153 RSYYRGAAGALMVIDVS 169
              Y  +   L+  D+S
Sbjct: 73  PLSYPDSDAVLICFDIS 89

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +  + 
Sbjct: 12  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDRLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
              Y    G     D++
Sbjct: 71  PLSYPQTVGETYGKDIT 87

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 14  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 68

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 37  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 91

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 12  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 66

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G +GVGKS L  QF +  F+     TI   +  ++ EV  ++  L+I DTAG E+F A+ 
Sbjct: 12  GSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQFTAMR 70
Query: 153 RSYYRGAAGALMVIDVS 169
             Y +   G  +V  ++
Sbjct: 71  DLYMKNGQGFALVYSIT 87

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+ LLH F +  F  +   T+  E  T   E+  ++I+L +WDT+G   +  V 
Sbjct: 35  GDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVR 93
Query: 153 RSYYRGAAGALMVIDVS 169
              Y  +   L+  D+S
Sbjct: 94  PLSYPDSDAVLICFDIS 110

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+ LLH F +  F  +   T+  E  T   E+  ++I+L +WDT+G   +  V 
Sbjct: 30  GDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDNVR 88
Query: 153 RSYYRGAAGALMVIDVSH 170
              Y  +   L+  D+S 
Sbjct: 89  PLSYPDSDAVLICFDISR 106

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD+ VGK+CLL  +T   F  +   T+   +   ++ V  + + L +WDTAGQE +
Sbjct: 17  GDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDY 71

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 64

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD+ VGK+CLL  +T   F  +   T+   +   ++ V  + + L +WDTAGQE +
Sbjct: 16  GDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDY 70

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  QF ++ F+PD   TI   +  +  E+  +   L + DTAGQE F A+   Y R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 159 AAGALMVIDVS 169
             G L+V  V+
Sbjct: 85  GDGFLIVYSVT 95

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD+ VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 10  GDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  QF +  F+     TI   +  ++ EV  ++  L+I DTAG E+F A+ 
Sbjct: 10  GSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQFTAMR 68
Query: 153 RSYYRGAAGALMVIDVS 169
             Y +   G  +V  ++
Sbjct: 69  DLYMKNGQGFALVYSIT 85

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R Y
Sbjct: 23  AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 77
Query: 156 YRGAAGALMVID 167
           Y G  G + V+D
Sbjct: 78  YTGTQGLIFVVD 89

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R Y
Sbjct: 10  AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 64
Query: 156 YRGAAGALMVIDVS 169
           Y G  G + V+D +
Sbjct: 65  YTGTQGLIFVVDCA 78

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L +F  +      P T+G  F  + +E  G   KL IWD  GQ+  R+  R+Y
Sbjct: 26  NAGKTTILKKFNGEDIDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNY 80
Query: 156 YRGAAGALMVID 167
           +    G + V+D
Sbjct: 81  FESTDGLIWVVD 92

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R Y
Sbjct: 22  AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 76
Query: 156 YRGAAGALMVID 167
           Y G  G + V+D
Sbjct: 77  YTGTQGLIFVVD 88

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R Y
Sbjct: 10  AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 64
Query: 156 YRGAAGALMVIDVS 169
           Y G  G + V+D +
Sbjct: 65  YTGTQGLIFVVDCA 78

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  QF +  F+ +   TI   +  ++ EV  ++  L+I DTAG E+F A+ 
Sbjct: 10  GSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQFTAMR 68
Query: 153 RSYYRGAAGALMVIDVS 169
             Y +   G  +V  ++
Sbjct: 69  DLYMKNGQGFALVYSIT 85

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R Y
Sbjct: 10  AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 64
Query: 156 YRGAAGALMVIDVS 169
           Y G  G + V+D +
Sbjct: 65  YTGTQGLIFVVDCA 78

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L +F  +      P T+G  F  + +E  G   KL IWD  GQ+  R+  R+Y
Sbjct: 28  NAGKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNY 82
Query: 156 YRGAAGALMVID 167
           +    G + V+D
Sbjct: 83  FESTDGLIWVVD 94

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L +F  +      P T+G  F  + +E  G   KL IWD  GQ+  R+  R+Y
Sbjct: 28  NAGKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNY 82
Query: 156 YRGAAGALMVID 167
           +    G + V+D
Sbjct: 83  FESTDGLIWVVD 94

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T      +   T+   +   ++ V G+ + L +WDTAGQE +
Sbjct: 37  GDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDY 91

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L +F  +      P T+G  F  + +E  G   KL IWD  GQ+  R+  R+Y
Sbjct: 28  NAGKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNY 82
Query: 156 YRGAAGALMVID 167
           +    G + V+D
Sbjct: 83  FESTDGLIWVVD 94

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V  + + L +WDTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQEDY 64

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  QF +  F+ D   TI   +  + + +     +L I DTAGQE F A+   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 159 AAGALMVIDVS 169
             G L+V  V+
Sbjct: 77  GEGFLLVFSVT 87

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L++    + +   P T+G    T    V  + +K  +WD  GQ++ R + R Y
Sbjct: 332 AAGKTTILYKLKLGQSVTTIP-TVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHY 386
Query: 156 YRGAAGALMVIDVS 169
           Y G  G + V+D +
Sbjct: 387 YTGTQGLIFVVDCA 400

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +
Sbjct: 37  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 91

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 14  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 68

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 12  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 66

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 12  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 71  PLSYPDTDVILMCFSID 87

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ LL Q   +    D  H    + G  I  V  +  KL +WD  GQ + R   RSY
Sbjct: 26  NAGKTTLLKQLASE----DISHITPTQ-GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSY 80
Query: 156 YRGAAGALMVIDVSHVK 172
           +      + VID +  K
Sbjct: 81  FENTDILIYVIDSADRK 97

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 82  GEGFLCVFAINNTK 95

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ LL Q   +    D  H    + G  I  V  +  KL +WD  GQ + R   RSY
Sbjct: 27  NAGKTTLLKQLASE----DISHITPTQ-GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSY 81
Query: 156 YRGAAGALMVIDVSHVK 172
           +      + VID +  K
Sbjct: 82  FENTDILIYVIDSADRK 98

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 10  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 68
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 69  PLSYPDTDVILMCFSID 85

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +
Sbjct: 13  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 67

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 10  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 68
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 69  PLSYPDTDVILMCFSID 85

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 75  GEGFLCVFAINNTK 88

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 17  GDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 71

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 12  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 71  PLSYPDTDVILMCFSID 87

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  QF ++ F+P+   TI   +  +  E+  +   L + DTAGQE F A+   Y R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 159 AAGALMVIDVS 169
             G L+V  V+
Sbjct: 90  GDGFLIVYSVT 100

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           G  GVGKS L  QF +  F+     TI   +  ++ EV  ++  L+I DTAG E+F A+ 
Sbjct: 10  GSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQFTAMR 68
Query: 153 RSYYRGAAGALMVIDVS 169
             Y +   G  +V  ++
Sbjct: 69  DLYMKNGQGFALVYSIT 85

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 20  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 74

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 75  GEGFLCVFAINNTK 88

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 75  GEGFLCVFAINNTK 88

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 17  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 71

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 80  GEGFLCVFAINNTK 93

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 80  GEGFLCVFAINNTK 93

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 64

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 11  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 65

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 12  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 71  PLSYPDTDVILMCFSID 87

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 75  GEGFLCVFAINNTK 88

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 75  GEGFLCVFAINNTK 88

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 75  GEGFLCVFAINNTK 88

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 13  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 67

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 13  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 67

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 75  GEGFLCVFAINNTK 88

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 75  GEGFLCVFAINNTK 88

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +
Sbjct: 10  GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 64

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD  VGK+CLL  F++ +       T+   F + +++   E+  L +WDTAGQE +  + 
Sbjct: 30  GDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLR 88
Query: 153 RSYYRGAAGALMVIDVSH 170
              Y  +   L+   V++
Sbjct: 89  PLSYADSDVVLLCFAVNN 106

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD  VGK+CLL  F++ +       T+   F + +++   E+  L +WDTAGQE +  + 
Sbjct: 29  GDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLR 87
Query: 153 RSYYRGAAGALMVIDVSH 170
              Y  +   L+   V++
Sbjct: 88  PLSYADSDVVLLCFAVNN 105

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 75  GEGFLCVFAINNTK 88

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ LL Q   +    D  H    + G  I  V  +  KL +WD  GQ + R   RSY
Sbjct: 14  NAGKTTLLKQLASE----DISHITPTQ-GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSY 68
Query: 156 YRGAAGALMVIDVSHVK 172
           +      + VID +  K
Sbjct: 69  FENTDILIYVIDSADRK 85

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 10  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 64

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 93  GEGFLCVFAINNSK 106

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 75  GEGFLCVFAINNTK 88

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 98  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 157
           GK+  ++     +F  D   T+G  F  R  +V    + ++IWD  GQ RFR++   Y R
Sbjct: 34  GKTTFVNVIASGQFSEDMIPTVG--FNMR--KVTKGNVTIKIWDIGGQPRFRSMWERYCR 89
Query: 158 GAAGALMVIDVS 169
           G    + +ID +
Sbjct: 90  GVNAIVYMIDAA 101

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T  KF  +   T+   +   ++ + GE   L ++DTAGQE +
Sbjct: 12  GDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQEDY 66

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152
           GD   GK+CLL   ++ +F P+       E     IEV G++++L +WDTAGQE +  + 
Sbjct: 12  GDGACGKTCLLIVNSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 153 RSYYRGAAGALMVIDVS 169
              Y      LM   + 
Sbjct: 71  PLSYPDTDVILMCFSID 87

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 97  VGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYY 156
           VGK+ L HQF E +F      T+   + ++I+ +  ++  L + DTAGQ+ +  +  S+ 
Sbjct: 35  VGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFI 93
Query: 157 RGAAGALMVIDVS 169
            G  G ++V  V+
Sbjct: 94  IGVHGYVLVYSVT 106

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 76  GEGFLCVFAINNTK 89

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 99  KSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158
           KS L  Q  +  F+ +   TI   +  +++ + GE   L I DTAGQE + A+   Y R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 159 AAGALMVIDVSHVK 172
             G L V  +++ K
Sbjct: 76  GEGFLCVFAINNTK 89

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 216

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
           G GK+ +L++    + +   P TIG  F    ++     I   +WD  GQ+R R++ R Y
Sbjct: 27  GAGKTTVLYKLKLGEVITTIP-TIG--FNVECVQYC--NISFTVWDVGGQDRIRSLWRHY 81
Query: 156 YRGAAGALMVID 167
           Y    G + V+D
Sbjct: 82  YCNTEGVIFVVD 93

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 216

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 93  GDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148
           GD  VGK+CLL  +T   F  +   T+   +   ++ V G+ + L +WDTAG E +
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDY 216

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L+QF+  + +   P       G+ + E+     +  +WD  GQE  R+   +Y
Sbjct: 26  NAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 80
Query: 156 YRGAAGALMVID 167
           Y      ++V+D
Sbjct: 81  YTNTEFVIVVVD 92

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L+QF+  + +   P       G+ + E+     +  +WD  GQE  R+   +Y
Sbjct: 31  NAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 85
Query: 156 YRGAAGALMVID 167
           Y      ++V+D
Sbjct: 86  YTNTEFVIVVVD 97

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L+QF+  + +   P       G+ + E+     +  +WD  GQE  R+   +Y
Sbjct: 26  NAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 80
Query: 156 YRGAAGALMVID 167
           Y      ++V+D
Sbjct: 81  YTNTEFVIVVVD 92

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
             GK+ +L+QF+  + +   P       G+ + E+     +  +WD  GQE  R+   +Y
Sbjct: 32  NAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 86
Query: 156 YRGAAGALMVID 167
           Y      ++V+D
Sbjct: 87  YTNTEFVIVVVD 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-59
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-13
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-59
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	6e-14
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	6e-59
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	6e-13
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	3e-58
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	5e-14
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	5e-58
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-13
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	6e-58
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	3e-13
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	8e-58
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	5e-13
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	4e-57
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-12
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	4e-57
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	4e-12
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	9e-57
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-12
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-56
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-12
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-56
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-13
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-56
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-12
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-56
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	6e-12
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-56
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-12
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	4e-56
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	6e-13
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	7e-56
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	5e-12
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	8e-56
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	9e-12
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-55
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-11
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-55
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	8e-12
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	4e-55
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-12
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	5e-55
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	6e-12
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	5e-55
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-11
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	6e-55
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-13
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	6e-55
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-12
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	6e-55
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-11
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	8e-55
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-11
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-54
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-10
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	8e-54
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-12
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-53
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-11
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-53
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	8e-11
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	4e-53
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-12
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-53
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-11
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-52
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-10
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-52
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-11
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	7e-52
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	8e-09
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	8e-52
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-11
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-51
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-11
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-51
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-08
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	6e-51
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	4e-09
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	7e-51
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-10
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	5e-49
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-10
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-47
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-08
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-45
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-40
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	6e-07
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-39
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-08
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-38
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-08
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-37
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-08
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	8e-37
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-06
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	5e-36
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	4e-07
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-35
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-06
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-33
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-07
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	5e-33
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-06
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	6e-33
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	6e-06
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-32
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-05
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-32
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	6e-06
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	8e-32
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-05
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	9e-32
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	6e-05
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-31
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	4e-05
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-31
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-05
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-31
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-05
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-31
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	8e-07
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-30
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	4e-05
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-30
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	9e-05
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-29
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-04
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	4e-29
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-06
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	9e-29
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-05
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-28
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-07
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	9e-27
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	5e-05
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	5e-26
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-06
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-21
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-05
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-20
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	3e-04
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-19
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	9e-04
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-19
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	4e-19
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	6e-19
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	9e-19
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-18
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-04
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-18
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	5e-18
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-17
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	6e-17
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-16
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	3e-04
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-13
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	5e-11
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-10
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	2e-10
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-10
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	4e-10
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-10
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	5e-10
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	6e-10
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-09
2fh5_B	214	SR-beta, signal recognition particle receptor beta	3e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-09
1nrj_B	218	SR-beta, signal recognition particle receptor beta	4e-09
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	5e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	5e-09
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	6e-09
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	7e-09
2ged_A	193	SR-beta, signal recognition particle receptor beta	2e-08
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-08
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-07
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-06
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	3e-04

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  183 bits (466), Expect = 1e-59
 Identities = 60/97 (61%), Positives = 75/97 (77%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
           S +   G     ++FK+++IG  G GKSCLLHQF E KF  D  HTIGVEFG+R++ V G
Sbjct: 12  SGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG 71

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           + +KLQIWDTAGQERFR+VTRSYYRGAAGAL+V D++
Sbjct: 72  KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT 108

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 4  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          +   G     ++FK+++IG  G GKSCLLHQF E K+      T
Sbjct: 14 LVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHT 57

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  182 bits (464), Expect = 2e-59
 Identities = 82/95 (86%), Positives = 89/95 (93%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
            S++  Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+K
Sbjct: 4   GSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 63

Query: 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           IKLQIWDTAGQERFRAVTRSYYRGAAGALMV D++
Sbjct: 64  IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT 98

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 65.3 bits (160), Expect = 6e-14
 Identities = 30/44 (68%), Positives = 35/44 (79%)

Query: 4  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
           S++  Y+YSYIFKYIIIGDMGVGKSCLLHQFTE+K+      T
Sbjct: 4  GSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHT 47

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  180 bits (460), Expect = 6e-59
 Identities = 60/88 (68%), Positives = 76/88 (86%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           +Y ++FK+++IG+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWD
Sbjct: 6   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQERFR+VTRSYYRGAAGAL+V D++
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDIT 93

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 62.6 bits (153), Expect = 6e-13
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          +Y ++FK+++IG+ G GKSCLLHQF E+K+      T
Sbjct: 6  TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHT 42

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  179 bits (457), Expect = 3e-58
 Identities = 62/94 (65%), Positives = 76/94 (80%)

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 135
           SS      SY+FKYIIIGD GVGKSCLL QFT+++F P    TIGVEFG R++ + G++I
Sbjct: 11  SSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI 70

Query: 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           KLQIWDTAGQE FR++TRSYYRGAAGAL+V D++
Sbjct: 71  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 104

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 65.7 bits (161), Expect = 5e-14
 Identities = 25/43 (58%), Positives = 30/43 (69%)

Query: 5  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          SS      SY+FKYIIIGD GVGKSCLL QFT++++     LT
Sbjct: 11 SSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT 53

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  179 bits (457), Expect = 5e-58
 Identities = 57/96 (59%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 75  MSSSGQ-YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE 133
           MSS    Y Y  +FK ++IGD GVGKS LL +FT+ +F  D   TIGVEF TR +E+ G+
Sbjct: 1   MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60

Query: 134 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           +IK QIWDTAGQER+RA+T +YYRGA GAL+V D+S
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDIS 96

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 4  MSSSGQ-YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          MSS    Y Y  +FK ++IGD GVGKS LL +FT+ ++ +  + T
Sbjct: 1  MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKST 45

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  178 bits (454), Expect = 6e-58
 Identities = 48/97 (49%), Positives = 67/97 (69%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
           S +   G   Y+++FK ++IG+ GVGK+ LL +FT  +F  D   TIGVEF TR + +  
Sbjct: 12  SGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT 71

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
             +K QIWDTAG ER+RA+T +YYRGA GAL+V D++
Sbjct: 72  AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLT 108

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query: 4  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          +   G   Y+++FK ++IG+ GVGK+ LL +FT  ++    + T
Sbjct: 14 LVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTT 57

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  178 bits (453), Expect = 8e-58
 Identities = 53/106 (50%), Positives = 70/106 (66%), Gaps = 1/106 (0%)

Query: 64  RKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEF 123
             + +      M +     Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF
Sbjct: 8   HHHGIPLPGRAMGTRDD-EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF 66

Query: 124 GTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
            TR I+V G+ IK QIWDTAG ER+RA+T +YYRGA GAL+V D++
Sbjct: 67  ATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIA 112

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 63.0 bits (154), Expect = 5e-13
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 6  SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
           +    Y Y+FK ++IGD GVGKS LL +FT  ++ L  + T
Sbjct: 20 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST 61

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  176 bits (449), Expect = 4e-57
 Identities = 52/87 (59%), Positives = 66/87 (75%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
           Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
           AGQER+R +T +YYRGA GAL+V D++
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIA 88

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          Y Y+FK ++IGD GVGKS LL +FT  ++ L  + T
Sbjct: 2  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST 37

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  176 bits (449), Expect = 4e-57
 Identities = 44/101 (43%), Positives = 67/101 (66%)

Query: 69  WALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII 128
             LV + S      Y ++FK +++GD  VGK+C++ +F    F      TIGV+F  + +
Sbjct: 12  SGLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTL 71

Query: 129 EVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           E+ G+++KLQIWDTAGQERFR +T+SYYR A GA++  D++
Sbjct: 72  EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDIT 112

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 5  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          S      Y ++FK +++GD  VGK+C++ +F    +      T
Sbjct: 19 SGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGST 61

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  175 bits (447), Expect = 9e-57
 Identities = 51/97 (52%), Positives = 62/97 (63%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
           S  SS          K +IIG+ GVGKS LL +FT+  F P+   TIGV+F  + I V G
Sbjct: 2   SSGSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG 61

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
            K KL IWDTAGQERFR +T SYYRGA G ++V DV+
Sbjct: 62  NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT 98

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 61.1 bits (149), Expect = 2e-12
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 5  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          SS          K +IIG+ GVGKS LL +FT+  +   L  T
Sbjct: 5  SSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAAT 47

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  175 bits (447), Expect = 1e-56
 Identities = 45/97 (46%), Positives = 68/97 (70%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
             +       Y ++FK ++IG+ GVGK+CL+ +FT+  F P    TIGV+F  + +E++G
Sbjct: 13  GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING 72

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           EK+KLQIWDTAGQERFR++T+SYYR A   ++  D++
Sbjct: 73  EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDIT 109

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 4  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          +       Y ++FK ++IG+ GVGK+CL+ +FT+  +  G   T
Sbjct: 15 VPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGAT 58

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  175 bits (447), Expect = 1e-56
 Identities = 51/95 (53%), Positives = 69/95 (72%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
            SS    SY  I K ++IGD GVGKSCLL +F E KF P    TIG++F  + ++++G+K
Sbjct: 9   ASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK 68

Query: 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           +KLQ+WDTAGQERFR +T +YYRGA G ++V DV+
Sbjct: 69  VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVT 103

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 21/47 (44%), Positives = 26/47 (55%)

Query: 1  MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
            + SS    SY  I K ++IGD GVGKSCLL +F E K+      T
Sbjct: 6  TVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITT 52

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  174 bits (444), Expect = 2e-56
 Identities = 41/88 (46%), Positives = 57/88 (64%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
             S +FK I++GD GVGKS L++++   KF     HTIGVEF  + +EV G  + +QIWD
Sbjct: 3   GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWD 62

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQERFR++   +YRG+   L+   V 
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVD 90

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 61.0 bits (149), Expect = 2e-12
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
            S +FK I++GD GVGKS L++++   K+   L  T
Sbjct: 3  GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHT 39

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  175 bits (445), Expect = 2e-56
 Identities = 41/97 (42%), Positives = 62/97 (63%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
             +         +  + IIIG  GVGK+ L+ +FT+  F   C  T+GV+F  + +E+ G
Sbjct: 13  GLVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG 72

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           +KI+LQIWDTAGQERF ++T +YYR A G ++V D++
Sbjct: 73  KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDIT 109

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 60.3 bits (147), Expect = 6e-12
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 4  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          +         +  + IIIG  GVGK+ L+ +FT+  +    + T
Sbjct: 15 VPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKST 58

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  175 bits (445), Expect = 2e-56
 Identities = 38/91 (41%), Positives = 62/91 (68%)

Query: 79  GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQ 138
           G + + Y+FK +IIG+  VGK+  L ++ +  F P    T+G++F  + I  + ++IKLQ
Sbjct: 1   GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQ 60

Query: 139 IWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           IWDTAG ER+R +T +YYRGA G +++ D++
Sbjct: 61  IWDTAGLERYRTITTAYYRGAMGFILMYDIT 91

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 61.1 bits (149), Expect = 2e-12
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 8  GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          G + + Y+FK +IIG+  VGK+  L ++ +  +      T
Sbjct: 1  GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVST 40

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  173 bits (442), Expect = 4e-56
 Identities = 54/97 (55%), Positives = 67/97 (69%), Gaps = 1/97 (1%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
             MSS     Y Y+FK ++IGD GVGKSCLL +F +  +      TIGV+F  R IE+ G
Sbjct: 4   GSMSSMNP-EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           + IKLQIWDTAGQERFR +T SYYRGA G ++V DV+
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 99

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 62.6 bits (153), Expect = 6e-13
 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 1  MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          + +MSS     Y Y+FK ++IGD GVGKSCLL +F +  Y
Sbjct: 3  LGSMSSMNP-EYDYLFKLLLIGDSGVGKSCLLLRFADDTY 41

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  173 bits (440), Expect = 7e-56
 Identities = 38/97 (39%), Positives = 65/97 (67%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
            + +   Q ++ Y+FK +IIG+  VGK+  L ++ +  F P    T+G++F  + +  H 
Sbjct: 10  GRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE 69

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           +++KLQIWDTAGQER+R +T +YYRGA G +++ D++
Sbjct: 70  KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 106

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query: 4  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
           +   Q ++ Y+FK +IIG+  VGK+  L ++ +  +
Sbjct: 12 ENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTF 48

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  173 bits (441), Expect = 8e-56
 Identities = 47/88 (53%), Positives = 66/88 (75%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
            Y Y+FK ++IG+ GVGKSCLL +F++  +  D   TIGV+F  + +E+ G+ +KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQERFR +T SYYRG+ G ++V DV+
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVT 91

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 60.0 bits (146), Expect = 9e-12
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
           Y Y+FK ++IG+ GVGKSCLL +F++  Y      T
Sbjct: 4  EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYIST 40

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  172 bits (438), Expect = 2e-55
 Identities = 48/88 (54%), Positives = 67/88 (76%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           +Y Y+FK ++IGD GVGK+C+L +F+E  F      TIG++F  R IE+ G++IKLQIWD
Sbjct: 4   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQERFR +T +YYRGA G ++V D++
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDIT 91

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 15/30 (50%), Positives = 24/30 (80%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          +Y Y+FK ++IGD GVGK+C+L +F+E  +
Sbjct: 4  TYDYLFKLLLIGDSGVGKTCVLFRFSEDAF 33

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  171 bits (436), Expect = 3e-55
 Identities = 37/94 (39%), Positives = 60/94 (63%)

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 135
           S +   + S   K +++GD+G GKS L+ +F + +F+     TIG  F ++ + V+   +
Sbjct: 2   SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV 61

Query: 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           K +IWDTAGQER+ ++   YYRGAA A++V DV+
Sbjct: 62  KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVT 95

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 59.5 bits (145), Expect = 8e-12
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 5  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          S +   + S   K +++GD+G GKS L+ +F + ++    + T
Sbjct: 2  SMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQEST 44

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  171 bits (436), Expect = 4e-55
 Identities = 43/95 (45%), Positives = 62/95 (65%), Gaps = 1/95 (1%)

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 135
           S   + S S IFK I+IGD  VGK+CL ++F   +F      TIGV+F  R +++ GE+I
Sbjct: 10  SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69

Query: 136 KLQIWDTAGQERFR-AVTRSYYRGAAGALMVIDVS 169
           K+Q+WDTAGQERFR ++ + YYR     + V D++
Sbjct: 70  KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMT 104

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 5  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          S   + S S IFK I+IGD  VGK+CL ++F   ++    + T
Sbjct: 10 SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEAT 52

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  171 bits (436), Expect = 5e-55
 Identities = 38/94 (40%), Positives = 60/94 (63%)

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 135
            S+  +S    +K ++ GD  VGKS  L +  + +F  +   T+GV+F  + + V GE+ 
Sbjct: 18  GSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERT 77

Query: 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
            LQ+WDTAGQERFR++ +SY+R A G L++ DV+
Sbjct: 78  VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVT 111

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 60.4 bits (147), Expect = 6e-12
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 5  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
           S+  +S    +K ++ GD  VGKS  L +  + ++   +  T
Sbjct: 18 GSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISAT 60

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  171 bits (435), Expect = 5e-55
 Identities = 54/97 (55%), Positives = 67/97 (69%), Gaps = 1/97 (1%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
             MSS     Y Y+FK ++IGD GVGKSCLL +F +  +      TIGV+F  R IE+ G
Sbjct: 21  RPMSSMNP-EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 79

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           + IKLQIWDTAGQERFR +T SYYRGA G ++V DV+
Sbjct: 80  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 116

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 19/35 (54%), Positives = 24/35 (68%)

Query: 6  SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          SS    Y Y+FK ++IGD GVGKSCLL +F +  Y
Sbjct: 24 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTY 58

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  172 bits (437), Expect = 6e-55
 Identities = 38/107 (35%), Positives = 65/107 (60%), Gaps = 10/107 (9%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
           S +   G   Y Y+ K + +GD GVGK+  L+++T+ KF P    T+G++F  + +  + 
Sbjct: 12  SGLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNA 71

Query: 133 E----------KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           +          K+ LQ+WDTAGQERFR++T +++R A G L++ D++
Sbjct: 72  QGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLT 118

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 4  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          +   G   Y Y+ K + +GD GVGK+  L+++T+ K+      T
Sbjct: 14 LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITT 57

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  170 bits (434), Expect = 6e-55
 Identities = 44/93 (47%), Positives = 65/93 (69%), Gaps = 1/93 (1%)

Query: 78  SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIK 136
           SG   Y   FK +++GD GVGK+CLL +F +  F+      T+G++F  ++++V G K+K
Sbjct: 2   SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK 61

Query: 137 LQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           LQ+WDTAGQERFR+VT +YYR A   L++ DV+
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVT 94

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 7  SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLG 43
          SG   Y   FK +++GD GVGK+CLL +F +  +  G
Sbjct: 2  SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG 38

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  170 bits (433), Expect = 6e-55
 Identities = 49/88 (55%), Positives = 64/88 (72%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
            Y ++FK +IIGD GVGKS LL +F +  F      TIGV+F  R +E++GEK+KLQIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQERFR +T +YYRG  G ++V DV+
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVT 92

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 3  TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          +M+      Y ++FK +IIGD GVGKS LL +F +  +      T
Sbjct: 1  SMARD----YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITT 41

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  170 bits (434), Expect = 8e-55
 Identities = 41/105 (39%), Positives = 64/105 (60%), Gaps = 10/105 (9%)

Query: 75  MSSSGQY----------SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG 124
           M SS  +             Y+FK ++IG+  VGK+  L ++ +  F P    T+G++F 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFK 60

Query: 125 TRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
            + +  H ++IKLQIWDTAGQER+R +T +YYRGA G L++ D++
Sbjct: 61  VKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIA 105

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 10/47 (21%)

Query: 4  MSSSGQY----------SYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          M SS  +             Y+FK ++IG+  VGK+  L ++ +  +
Sbjct: 1  MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSF 47

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  168 bits (429), Expect = 2e-54
 Identities = 47/85 (55%), Positives = 65/85 (76%)

Query: 85  YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 144
            I K ++IGD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQIWDTAG
Sbjct: 2   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61

Query: 145 QERFRAVTRSYYRGAAGALMVIDVS 169
           QERFR +T +YYRGA G ++V D++
Sbjct: 62  QERFRTITTAYYRGAMGIILVYDIT 86

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 55.6 bits (135), Expect = 2e-10
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
           I K ++IGD GVGKSCLL +F E K+      T
Sbjct: 2  SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITT 35

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  167 bits (426), Expect = 8e-54
 Identities = 34/95 (35%), Positives = 57/95 (60%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
           MSS    +    FK + +G+  VGK+ L+ +F    F      TIG++F ++ + +    
Sbjct: 3   MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62

Query: 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           ++LQ+WDTAGQERFR++  SY R +  A++V D++
Sbjct: 63  VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDIT 97

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 61.0 bits (149), Expect = 2e-12
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 3  TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          TMSS    +    FK + +G+  VGK+ L+ +F    +    Q T
Sbjct: 2  TMSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT 46

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  167 bits (426), Expect = 2e-53
 Identities = 39/95 (41%), Positives = 60/95 (63%), Gaps = 4/95 (4%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
           M+S        + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ + V    
Sbjct: 1   MTSR----KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL 56

Query: 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           + +QIWDTAGQERF+++  ++YRGA   ++V DV+
Sbjct: 57  VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVT 91

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)

Query: 4  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          M+S        + K II+GD GVGK+ L++Q+  +K+
Sbjct: 1  MTSR----KKVLLKVIILGDSGVGKTSLMNQYVNKKF 33

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  165 bits (421), Expect = 3e-53
 Identities = 36/88 (40%), Positives = 58/88 (65%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           S +Y FK +++G+  VGK+ L+ ++ E KF      T+G  F T+ + + G+++ L IWD
Sbjct: 2   SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQERF A+   YYR + GA++V D++
Sbjct: 62  TAGQERFHALGPIYYRDSNGAILVYDIT 89

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 56.7 bits (138), Expect = 8e-11
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          S +Y FK +++G+  VGK+ L+ ++ E K+      T
Sbjct: 2  SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITT 38

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  166 bits (423), Expect = 4e-53
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 10/98 (10%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV----------H 131
            Y Y+ K++ +GD GVGK+ +L+Q+T+ KF      T+G++F  + +             
Sbjct: 7   DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGR 66

Query: 132 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           G++I LQ+WDTAG ERFR++T +++R A G L++ D++
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLT 104

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 3  TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          +MS      Y Y+ K++ +GD GVGK+ +L+Q+T+ K+      T
Sbjct: 2  SMSDG---DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITT 43

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  167 bits (424), Expect = 4e-53
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 4/104 (3%)

Query: 70  ALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRI 127
           ++V K       + +   K  ++G+  VGKS L+  FT +  KF+ D   T GVE     
Sbjct: 4   SMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAP 63

Query: 128 IEVHGEKIKLQIW--DTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           + +    + ++++  DTAG + ++     Y+ G   A++V DVS
Sbjct: 64  VTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVS 107

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 1  MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQ 38
          +K        + +   K  ++G+  VGKS L+  FT +
Sbjct: 6  VKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSK 43

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  164 bits (418), Expect = 1e-52
 Identities = 34/87 (39%), Positives = 55/87 (63%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
                K +++G+  VGKS ++ ++ +  F  D   TIGV+F  R I+V+ E ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
           AGQE F A+T++YYRGA   ++V   +
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTT 88

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 56.0 bits (136), Expect = 1e-10
 Identities = 6/29 (20%), Positives = 16/29 (55%)

Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
               K +++G+  VGKS ++ ++ +  +
Sbjct: 2  SEVAIKMVVVGNGAVGKSSMIQRYCKGIF 30

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  164 bits (417), Expect = 2e-52
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIW 140
           S+    K +++GD   GK+ L   F ++ F      TIG++F  R I + G   + LQIW
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 141 DTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           D  GQ     +   Y  GA G L+V D++
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDIT 90

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 57.9 bits (141), Expect = 3e-11
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          S+    K +++GD   GK+ L   F ++ +    + T
Sbjct: 2  SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQT 38

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  162 bits (413), Expect = 7e-52
 Identities = 33/88 (37%), Positives = 54/88 (61%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           +    FK +++G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVS 169
           TAGQER+ ++   YYRGA  A++V D++
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDIT 89

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 51.0 bits (123), Expect = 8e-09
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
          +    FK +++G+  VGKS L+ +F + ++    + T
Sbjct: 2  NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQEST 38

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  164 bits (416), Expect = 8e-52
 Identities = 31/97 (31%), Positives = 50/97 (51%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
             M+S+ Q      FK +++GD G GK+  + +    +F      T+GVE    +   + 
Sbjct: 2   PHMASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR 61

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
             IK  +WDTAGQE+F  +   YY  A  A+++ DV+
Sbjct: 62  GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVT 98

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 3  TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
           M+S+ Q      FK +++GD G GK+  + +    ++
Sbjct: 3  HMASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  161 bits (411), Expect = 2e-51
 Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 5/96 (5%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
           MSS        I K II+GD GVGK+ L+H++   K+      TIG +F T+ + V G+K
Sbjct: 1   MSSR----KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK 56

Query: 135 -IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
              +Q+WDTAGQERF+++  ++YRGA   ++V DV+
Sbjct: 57  VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT 92

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 58.0 bits (141), Expect = 3e-11
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 4  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          MSS        I K II+GD GVGK+ L+H++   KY
Sbjct: 1  MSSR----KKNILKVIILGDSGVGKTSLMHRYVNDKY 33

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  161 bits (409), Expect = 2e-51
 Identities = 38/83 (45%), Positives = 53/83 (63%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K  ++GD GVGKS ++ +F E  F P+   TIG  F T+ ++   E  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           RFRA+   YYRG+A A++V D++
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDIT 89

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
           K  ++GD GVGKS ++ +F E  +   +  T
Sbjct: 7  LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPT 38

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  160 bits (408), Expect = 6e-51
 Identities = 36/94 (38%), Positives = 53/94 (56%)

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 135
               + S     K  ++GD GVGKS ++ +F +  F  +   TIG  F T+ +    E  
Sbjct: 13  GLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH 72

Query: 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           K  IWDTAGQERF ++   YYRG+A A++V D++
Sbjct: 73  KFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDIT 106

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 52.2 bits (126), Expect = 4e-09
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 5  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
              + S     K  ++GD GVGKS ++ +F +  +   +  T
Sbjct: 13 GLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPT 55

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  161 bits (409), Expect = 7e-51
 Identities = 33/98 (33%), Positives = 58/98 (59%), Gaps = 1/98 (1%)

Query: 73  SKMSSSGQY-SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH 131
             MS+ G + +    FK + +G+  VGK+ L+ +F    F      TIG++F ++ + + 
Sbjct: 2   PGMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE 61

Query: 132 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
              ++LQ+WDTAG ERFR++  SY R +  A++V D++
Sbjct: 62  DRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDIT 99

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 3  TMSSSGQY-SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
           MS+ G + +    FK + +G+  VGK+ L+ +F    +    Q T
Sbjct: 3  GMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQAT 48

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  156 bits (397), Expect = 5e-49
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVE-FGTRIIEVHGEKIKLQIW 140
                +K  +IGD GVGK+  +++  + +F  +   T+G        ++  G  IK  +W
Sbjct: 7   RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVW 66

Query: 141 DTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           DTAGQE+   +   YY GA+GA++  DV+
Sbjct: 67  DTAGQEKKAVLKDVYYIGASGAILFFDVT 95

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 55.0 bits (133), Expect = 6e-10
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
               +K  +IGD GVGK+  +++  + ++
Sbjct: 7  RRELTYKICLIGDGGVGKTTYINRVLDGRF 36

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  150 bits (380), Expect = 5e-47
 Identities = 33/83 (39%), Positives = 51/83 (61%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K +++G+  VGKS ++ +F    F  +   TIG  F T+ + ++   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           RF ++   YYR A  AL+V DV+
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVT 86

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 8/32 (25%), Positives = 17/32 (53%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
           K +++G+  VGKS ++ +F    +    + T
Sbjct: 4  IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPT 35

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  147 bits (373), Expect = 2e-45
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 37/125 (29%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK----- 136
                +K +++G+  VGKS ++ + T+  F  +   TIG  F T ++ ++   IK     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 137 --------------------------------LQIWDTAGQERFRAVTRSYYRGAAGALM 164
                                             IWDTAGQER+ ++   YYRGA  A++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 165 VIDVS 169
           V D+S
Sbjct: 123 VFDIS 127

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  134 bits (338), Expect = 2e-40
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH--TIGVEFGTRIIEVHGEK---IKLQIWD 141
            K +I+G+ G GK+ LL Q  + K         T+G++     I++  ++   + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVSHVKE 173
            AG+E F +    +    A  L V D+S  + 
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQA 94

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           K +I+G+ G GK+ LL Q  + K 
Sbjct: 3  MKLMIVGNTGSGKTTLLQQLMKTKK 27

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  131 bits (333), Expect = 2e-39
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
            + +   Q     IFK +++G+ GVGKS L   F   +           +   R I V  
Sbjct: 10  GRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDK 69

Query: 133 EKIKLQIWDTAGQERFRAVTRS-YYRGAAGALMVIDV 168
           E++ L ++D   Q       R    +     L+V  V
Sbjct: 70  EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSV 106

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 5  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          +   Q     IFK +++G+ GVGKS L   F   + 
Sbjct: 13 NLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQG 48

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  128 bits (324), Expect = 2e-38
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
             S   K +++G  GVGKS L  QF +  F+ D   TI   + T+I  V G   +L I D
Sbjct: 5   PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILD 63

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDV 168
           TAGQE F A+   Y R   G L+V  +
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAI 90

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 50.6 bits (122), Expect = 1e-08
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 3  TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          +M        S   K +++G  GVGKS L  QF +  +
Sbjct: 1  SMDPP----PSETHKLVVVGGGGVGKSALTIQFIQSYF 34

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  126 bits (318), Expect = 2e-37
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 135
              G  +   + K I++G  GVGKS L  QF   +F+ D   T    +  + + + GE++
Sbjct: 8   GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEV 66

Query: 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168
           ++ I DTAGQE + A+  +Y+R   G L V  +
Sbjct: 67  QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSI 99

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 5  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
             G  +   + K I++G  GVGKS L  QF   ++
Sbjct: 8  GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEF 43

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  124 bits (313), Expect = 8e-37
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 86  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
           +FK +++G+ GVGKS L   F   +           +   R I V  E++ L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 146 ERFRAVTRS-YYRGAAGALMVIDV 168
                  +    +     L+V  V
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSV 85

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40
          +FK +++G+ GVGKS L   F   + 
Sbjct: 2  VFKVMLVGESGVGKSTLAGTFGGLQG 27

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  123 bits (310), Expect = 5e-36
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 75  MSSSGQ--YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
           M+++     +   + K I++G  GVGKS L  QF   +F+ D   T    +  + + + G
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 59

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168
           E++++ I DTAGQE + A+  +Y+R   G L V  +
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSI 95

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 4  MSSSGQ--YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          M+++     +   + K I++G  GVGKS L  QF   ++
Sbjct: 1  MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEF 39

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  119 bits (301), Expect = 5e-35
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K I++G  GVGKS L  QF   +F+ D   T    +  + + + GE++++ I DTAGQE
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE 63

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
            + A+  +Y+R   G L V  +
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSI 85

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 43.6 bits (104), Expect = 5e-06
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           K I++G  GVGKS L  QF   ++
Sbjct: 5  HKVIMVGSGGVGKSALTLQFMYDEF 29

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  116 bits (293), Expect = 1e-33
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 135
           +S+        +K +++GD GVGKS L  QF ++ F+ D   TI   +  +  E+  +  
Sbjct: 8   TSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWA 66

Query: 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168
            L + DTAGQE F A+   Y R   G L+V  V
Sbjct: 67  ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSV 99

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 1  MKTMSSSG-QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          + +M++S         +K +++GD GVGKS L  QF ++ +
Sbjct: 3  LGSMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIF 43

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  114 bits (289), Expect = 5e-33
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
             S   K  I+G   VGKS L  QF E +F+     TI   F T++I V+G++  LQ+ D
Sbjct: 2   PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVD 60

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDV 168
           TAGQ+ +    ++Y     G ++V  V
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSV 87

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
            S   K  I+G   VGKS L  QF E ++
Sbjct: 2  PQSKSRKIAILGYRSVGKSSLTIQFVEGQF 31

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  115 bits (290), Expect = 6e-33
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 135
                       K +I+G   VGK+ L HQF E +F      T+   + ++I+ +  ++ 
Sbjct: 14  LYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEF 72

Query: 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168
            L + DTAGQ+ +  +  S+  G  G ++V  V
Sbjct: 73  HLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSV 105

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 2  KTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          +              K +I+G   VGK+ L HQF E ++
Sbjct: 11 RENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEF 49

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  112 bits (284), Expect = 1e-32
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  Q  +  F+ +C  TI   +  + + + GE   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
            + A+   Y R   G L V  ++
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAIN 85

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          +K +++G  GVGKS L  Q  +  +
Sbjct: 4  YKLVVVGAGGVGKSALTIQLIQNHF 28

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  113 bits (286), Expect = 2e-32
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
             S  ++ ++ G  GVGKS L+ +F +  F      TI   +  ++I        LQI D
Sbjct: 4   EQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITD 62

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDV 168
           T G  +F A+ R         ++V  V
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSV 89

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
            S  ++ ++ G  GVGKS L+ +F +  +
Sbjct: 4  EQSNDYRVVVFGAGGVGKSSLVLRFVKGTF 33

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  111 bits (279), Expect = 8e-32
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 86  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
           ++K +++G  GVGKS L   F   +  P+     G  +  R I V GE+  L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAE-AAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 146 ERFRAVTRSYYRGAAGALMVIDV 168
           +  R +           ++V  V
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSV 82

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 40.6 bits (96), Expect = 5e-05
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 15 IFKYIIIGDMGVGKSCLLHQFTE 37
          ++K +++G  GVGKS L   F  
Sbjct: 2  VYKVLLLGAPGVGKSALARIFGG 24

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  111 bits (279), Expect = 9e-32
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 84  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
           S  ++  + G  GVGKS L+ +F +  F      T+   +  ++I        LQI DT 
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTT 59

Query: 144 GQERFRAVTRSYYRGAAGALMVIDV 168
           G  +F A+ R         ++V  +
Sbjct: 60  GSHQFPAMQRLSISKGHAFILVYSI 84

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          S  ++  + G  GVGKS L+ +F +  +
Sbjct: 1  SNDYRVAVFGAGGVGKSSLVLRFVKGTF 28

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  110 bits (278), Expect = 1e-31
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  QF    F+     TI  +F  + IEV      L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
           +F ++   Y +   G ++V  +
Sbjct: 63  QFASMRDLYIKNGQGFILVYSL 84

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          +K +++G  GVGKS L  QF    +
Sbjct: 4  YKVVVLGSGGVGKSALTVQFVTGTF 28

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  110 bits (277), Expect = 2e-31
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           ++ +++GD GVGK+ L   F  ++        +G +   R + V GE   L + DT   E
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63

Query: 147 RFRAVT--RSYYRGAAGALMVIDV 168
           +        S  +G +  ++V  +
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSI 87

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFL 42
          ++ +++GD GVGK+ L   F   K   
Sbjct: 5  YRVVLLGDPGVGKTSLASLFA-GKQER 30

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  109 bits (276), Expect = 2e-31
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  QF +  F+     TI   +  + +EV  ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
           +F A+   Y +   G  +V  +
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSI 84

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 41.3 bits (98), Expect = 3e-05
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          +K +++G  GVGKS L  QF +  +
Sbjct: 4  YKLVVLGSGGVGKSALTVQFVQGIF 28

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  110 bits (277), Expect = 4e-31
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 77  SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIK 136
                + S   K  I G  GVGKS L+ +F  ++F+ +   T+   +      +  E + 
Sbjct: 19  YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVS 77

Query: 137 LQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168
           ++I DTAGQE        + R   G ++V D+
Sbjct: 78  MEILDTAGQEDT-IQREGHMRWGEGFVLVYDI 108

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 6  SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLG 43
               + S   K  I G  GVGKS L+ +F   K F+ 
Sbjct: 19 YFQSMAKSAEVKLAIFGRAGVGKSALVVRFL-TKRFIW 55

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  108 bits (272), Expect = 2e-30
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  Q  +  F+ +   TI   +  + + + GE   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
            + A+   Y R   G L V  +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAI 85

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          +K +++G  GVGKS L  Q  +  +
Sbjct: 5  YKLVVVGADGVGKSALTIQLIQNHF 29

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  107 bits (269), Expect = 5e-30
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  Q  +  F+ +   TI   +  + + + GE   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 80

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
            + A+   Y R   G L V  +
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAI 102

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          +K +++G  GVGKS L  Q  +  +
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHF 46

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  112 bits (281), Expect = 1e-29
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 65  KNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG 124
           +    ++    S      +    K  +IGD   GK+ LL Q   + F P    T G+   
Sbjct: 20  RQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVV 79

Query: 125 TRIIEVH--------GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           T+              ++     WD  GQE   A  + +   ++  ++++D  
Sbjct: 80  TKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR 132

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 1  MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
           +  S      +    K  +IGD   GK+ LL Q   + +
Sbjct: 27 EEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETF 66

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  104 bits (262), Expect = 4e-29
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            +  ++GD   GKS L+H+F    +      T   ++  + + V G+   + I + AG  
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQVLEK-TESEQY-KKEMLVDGQTHLVLIREEAGAP 65

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
             +     +   A   + V  +
Sbjct: 66  DAK-----FSGWADAVIFVFSL 82

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           +  ++GD   GKS L+H+F    Y
Sbjct: 8  LRLGVLGDARSGKSSLIHRFLTGSY 32

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  104 bits (261), Expect = 9e-29
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 72  VSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH 131
             + +   Q          I+G  G GKS L  +F  ++F+ +    +   + +    V 
Sbjct: 9   SGRENLYFQGPLEV--NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVD 65

Query: 132 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168
            + + L++ DTA  +  R   R Y   A   L+V  V
Sbjct: 66  HQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSV 101

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 4  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLG 43
           +   Q          I+G  G GKS L  +F   K F+ 
Sbjct: 12 ENLYFQGPLEV--NLAILGRRGAGKSALTVKFL-TKRFIS 48

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  103 bits (260), Expect = 2e-28
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 57  STSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP 116
           S+   +  +NL +  +S  S     S +  ++ ++IG+ GVGKS L + F       D  
Sbjct: 8   SSGVDLGTENLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD 67

Query: 117 H-TIGVEFGTRIIEVHGEK---IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168
              +G +   R + V GE    I L +W+  G+  +  +     +     L+V  +
Sbjct: 68  CEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSI 121

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 1  MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          M T S     S +  ++ ++IG+ GVGKS L + F     
Sbjct: 23 MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHD 62

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 98.9 bits (247), Expect = 9e-27
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEK---IKLQIWDT 142
           ++ ++IG+ GVGKS L + F       D     +G +   R + V GE    I L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66

Query: 143 AGQERFRAVTRSYYRGAAGALMVIDV 168
            G+  +  +     +     L+V  +
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSI 90

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTE 37
          ++ ++IG+ GVGKS L + F  
Sbjct: 7  YRVVLIGEQGVGKSTLANIFAG 28

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 96.9 bits (242), Expect = 5e-26
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K  I+G++  GKS L+H++    ++ +     G  F  + I V G+   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
             +     +       + V  +
Sbjct: 79  ELQ-----FAAWVDAVVFVFSL 95

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           K  I+G++  GKS L+H++    Y
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTY 45

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 85.8 bits (213), Expect = 1e-21
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 135
            +    +     K +++GD  VGK+CLL  F++ +       T+   F   +++   E+ 
Sbjct: 13  GAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEF 71

Query: 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
            L +WDTAGQE +  +    Y  +   L+   V++
Sbjct: 72  ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNN 106

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 5  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51
           +    +     K +++GD  VGK+CLL  F++ +          YV
Sbjct: 13 GAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEI------PTAYV 53

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 82.4 bits (204), Expect = 2e-20
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 79  GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQ 138
           G  S S   K + +GD  VGK+CLL  +T   F  D   T+   F +  + V+G  + L 
Sbjct: 1   GSMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLG 59

Query: 139 IWDTAGQERFRAVTRSYYRGAAGALMVIDV 168
           +WDTAGQE +  +    YRGA   ++   +
Sbjct: 60  LWDTAGQEDYNRLRPLSYRGADVFILAFSL 89

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 8  GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          G  S S   K + +GD  VGK+CLL  +T   +
Sbjct: 1  GSMSASRFIKCVTVGDGAVGKTCLLISYTSNTF 33

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 81.3 bits (201), Expect = 1e-19
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 72  VSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH 131
              M+           K +++GD G GK+ LL  F +  F      T+   +    ++V 
Sbjct: 20  FQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVK 78

Query: 132 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168
           G+ + L IWDTAGQ+ +  +   +Y  A+  L+  DV
Sbjct: 79  GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDV 115

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query: 1  MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
           ++M+           K +++GD G GK+ LL  F +  +
Sbjct: 20 FQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAF 59

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 80.2 bits (198), Expect = 2e-19
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD   GK+CLL  F++ +F      T+   +   I EV G++++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELALWDTAGQED 85

Query: 148 FRAVTRSYYRGAAGALMVIDV 168
           +  +    Y      LM   V
Sbjct: 86  YDRLRPLSYPDTDVILMCFSV 106

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 79.4 bits (196), Expect = 4e-19
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
           S +   G +  +   K +I+GD   GK+CLL  F++ +F      T+  E     IEV G
Sbjct: 12  SGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDG 70

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168
           ++++L +WDTAGQE +  +    Y      LM   +
Sbjct: 71  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSI 106

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 79.0 bits (195), Expect = 6e-19
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K +++GD  VGK+CLL  +T   F  +   T+  +  +  + V G+ + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
            +  +    Y      L+   + 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLV 112

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 78.2 bits (193), Expect = 9e-19
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD   GK+ LLH F +  F  +   T+   +     E+  ++I+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 67

Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
           +  V    Y  +   L+  D+S
Sbjct: 68  YDNVRPLSYPDSDAVLICFDIS 89

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 78.3 bits (193), Expect = 1e-18
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 57  STSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP 116
           S+       + L    S M  +     +   K +++GD   GK+ LLH F +  F  +  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMDPN----QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV 58

Query: 117 HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
            T+   +     E+  ++I+L +WDT+G   +  V    Y  +   L+  D+S
Sbjct: 59  PTVFENYTA-SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDIS 110

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 3  TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
             S    + +   K +++GD   GK+ LLH F +  +
Sbjct: 16 PRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCF 53

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 78.0 bits (192), Expect = 2e-18
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K +++GD+  GK+ +L    +  +      T+   +    +E   ++++L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSP 86

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
            +  V    Y  +   L+  D+S
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDIS 109

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 76.3 bits (188), Expect = 5e-18
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD  VGK+CLL  +T   F  +   T+  +  +  + V G+ + L +WDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
           +  +    Y     +L+   + 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLV 87

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 74.0 bits (182), Expect = 4e-17
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 1/101 (0%)

Query: 68  LWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRI 127
           +             +     K +++GD  VGK+ L+  +T   +  +   T   +  + +
Sbjct: 2   MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAV 60

Query: 128 IEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168
           + V G  ++LQ+ DTAGQ+ F  +    Y      L+   V
Sbjct: 61  VSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSV 101

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 73.7 bits (181), Expect = 6e-17
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG 132
           +  SS      + + K +++GD  VGK+CLL  +    F  +   T+  +     + V G
Sbjct: 5   AGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGG 63

Query: 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDV 168
           ++  L ++DTAGQE +  +    Y      L+   V
Sbjct: 64  KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSV 99

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 73.2 bits (180), Expect = 1e-16
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           S S   K + +GD  VGK+C+L  +T  KF  D   T+   F    + V G+ + L +WD
Sbjct: 5   SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWD 63

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDV 168
           TAGQE +  +    YRGA   ++   +
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSL 90

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          S S   K + +GD  VGK+C+L  +T  K+
Sbjct: 5  SVSKFIKCVTVGDGAVGKTCMLICYTSNKF 34

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH----------TIGVEFGT-RIIEVHGEKI 135
           FK +  G    GK+  L     +                  T+  +F    I EV G K 
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169
           +  ++   GQ  + A  +   RG  G + V D +
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA 108

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 57.2 bits (139), Expect = 5e-11
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
           +I+G  G GK+ +L++    + +   P TIG  F    +      +K Q+WD  G    R
Sbjct: 11  LILGLDGAGKTTILYRLQVGEVVTTIP-TIG--FNVETVTYKN--LKFQVWDLGGLTSIR 65

Query: 150 AVTRSYYRGAAGALMVID 167
              R YY      + V+D
Sbjct: 66  PYWRCYYSNTDAVIYVVD 83

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            + +I+G  G GK+ +L++    + +   P TIG  F    +      +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTKP-TIG--FNVETLSYKN--LKLNVWDLGGQT 73

Query: 147 RFRAVTRSYYRGAAGALMVID 167
             R   R YY   A  + V+D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVD 94

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
           +++G    GK+ +L++      +   P T+G       ++     I  ++WD  GQ   R
Sbjct: 26  LMLGLDNAGKTSILYRLHLGDVVTTVP-TVG--VNLETLQYKN--ISFEVWDLGGQTGVR 80

Query: 150 AVTRSYYRGAAGALMVID 167
              R Y+      + V+D
Sbjct: 81  PYWRCYFSDTDAVIYVVD 98

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
           +++G    GK+ +L++    + +   P TIG  F    +E     I   +WD  GQ++ R
Sbjct: 4   LMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN--ISFTVWDVGGQDKIR 58

Query: 150 AVTRSYYRGAAGALMVID 167
            + R Y++   G + V+D
Sbjct: 59  PLWRHYFQNTQGLIFVVD 76

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
           +++G    GK+ +L +F  +      P T+G  F  + +E  G   KL IWD  GQ+  R
Sbjct: 22  LMLGLDNAGKTTILKKFNGEDVDTISP-TLG--FNIKTLEHRG--FKLNIWDVGGQKSLR 76

Query: 150 AVTRSYYRGAAGALMVID 167
           +  R+Y+    G + V+D
Sbjct: 77  SYWRNYFESTDGLIWVVD 94

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K II+G    GK+ +L+QF+  + +   P TIG       I ++    +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 147 RFRAVTRSYYRGAAGALMVID 167
             R+   +YY      ++V+D
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVD 92

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 83  YSYIF-----KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKL 137
           +S IF     + +++G    GK+ +L++    + +   P TIG  F    +E     I  
Sbjct: 21  FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETVEYKN--ICF 75

Query: 138 QIWDTAGQERFRAVTRSYYRGAAGALMVID 167
            +WD  GQ++ R + R Y++   G + V+D
Sbjct: 76  TVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 105

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K II+G    GK+ +L+QF+  + +   P TIG       I ++    +  +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIG--SNVEEIVINN--TRFLMWDIGGQE 76

Query: 147 RFRAVTRSYYRGAAGALMVID 167
             R+   +YY      ++V+D
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVD 97

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 53.7 bits (130), Expect = 1e-09
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
           +++G    GK+ LL Q   +      P T G  F  + ++  G   KL +WD  GQ + R
Sbjct: 20  LLLGLDNAGKTTLLKQLASEDISHITP-TQG--FNIKSVQSQG--FKLNVWDIGGQRKIR 74

Query: 150 AVTRSYYRGAAGALMVID 167
              RSY+      + VID
Sbjct: 75  PYWRSYFENTDILIYVID 92

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK-IKLQIWDTAGQERF 148
           + +G    GK+ L  +    ++      +I     + I +V+  +   L + D  G E  
Sbjct: 11  LFVGLCDSGKTLLFVRLLTGQYRDTQT-SIT--DSSAIYKVNNNRGNSLTLIDLPGHESL 67

Query: 149 RA-VTRSYYRGAAGALMVIDVS 169
           R  +   +   A   + V+D +
Sbjct: 68  RFQLLDRFKSSARAVVFVVDSA 89

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 10/102 (9%)

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 135
           S  G    SY    II G    GK+ LL   T     P    +        +     +  
Sbjct: 2   SHMGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQE-----PLSAADYDGS 55

Query: 136 KLQIWDTAGQERFRAVTRSYYRGAAGALM----VIDVSHVKE 173
            + + D  G  + R     Y +  A  +     ++D +   +
Sbjct: 56  GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK 97

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 98  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 157
           GK+  ++     +F  D   T+G  F  R I      + +++WD  GQ RFR++   Y R
Sbjct: 34  GKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQPRFRSMWERYCR 89

Query: 158 GAAGALMVID 167
           G +  + ++D
Sbjct: 90  GVSAIVYMVD 99

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 98  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 157
           GK+ LLH   + +     P T+     +  + + G  +    +D  G  + R V ++Y  
Sbjct: 37  GKTTLLHMLKDDRLGQHVP-TLH--PTSEELTIAG--MTFTTFDLGGHIQARRVWKNYLP 91

Query: 158 GAAGALMVID 167
              G + ++D
Sbjct: 92  AINGIVFLVD 101

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 51.8 bits (125), Expect = 6e-09
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 98  GKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 157
           GK+ LLH     +     P T      +  + +    IK   +D  G  + R + + Y+ 
Sbjct: 35  GKTTLLHMLKNDRLATLQP-TWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFP 89

Query: 158 GAAGALMVID 167
              G + ++D
Sbjct: 90  EVNGIVFLVD 99

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 51.5 bits (124), Expect = 7e-09
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 90  IIIGDMGVGKSCLLHQF--TEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           + +G    GK+ ++++   +  +     P TIG  F     +     +   ++D +GQ R
Sbjct: 25  LCLGLDNSGKTTIINKLKPSNAQSQNILP-TIG--FSIEKFKSSS--LSFTVFDMSGQGR 79

Query: 148 FRAVTRSYYRGAAGALMVID 167
           +R +   YY+     + VID
Sbjct: 80  YRNLWEHYYKEGQAIIFVID 99

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 10/112 (8%)

Query: 66  NLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGT 125
                +  K+        SY    II G    GK+ LL   T     P    +       
Sbjct: 28  QWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQE----- 81

Query: 126 RIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL----MVIDVSHVKE 173
            +     +   + + D  G  + R     Y +  A  +     ++D +   +
Sbjct: 82  PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK 133

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 51.0 bits (122), Expect = 2e-08
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 69  WALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII 128
            A                 + +++G    GK+ +L++    + +   P TIG  F    +
Sbjct: 148 PAQNWTPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIG--FNVETV 204

Query: 129 EVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167
           E     I   +WD  GQ++ R + R Y++   G + V+D
Sbjct: 205 EYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 241

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 36  TEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDM 95
            + +YF+G+QL                        L+ K + +   +   + K +++GD 
Sbjct: 113 GDVQYFIGVQLDGTEHVRDAAEREG--------VMLIKKTAENIDEAAKELIKCVVVGDG 164

Query: 96  GVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155
            VGK+CLL  +T   F  +   T+  +  +  + V G+ + L +WDTAG E +  +    
Sbjct: 165 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLS 223

Query: 156 YRGA 159
           Y   
Sbjct: 224 YPQT 227

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPH---TIGVEFGTRIIEVHGEKIKLQIWDTAG 144
           + +++G    GKS +      +    +      T  +         +   +  QIWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDIS---NSSFVNFQIWDFPG 78

Query: 145 QERFRAVT---RSYYRGAAGALMVIDV 168
           Q  F   T      +RG    + VID 
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDA 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-07
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 71/201 (35%)

Query: 30  CLLHQFTEQ-KYFLGLQLTQDYVCL-----------------------RLVSTSQP---- 61
            LL +  E  + F+   L  +Y  L                       RL + +Q     
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 62  -ITRKNLLWAL---VSKMSSSGQYSYSYIFKYIII-GDMGVGKSCL----LHQFTEQKFM 112
            ++R      L   + ++  +         K ++I G +G GK+ +       +  Q  M
Sbjct: 130 NVSRLQPYLKLRQALLELRPA---------KNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 113 PDCPH--TIGVEFGTR-IIEV-----------------HGEKIKLQIWDTAGQERFRAVT 152
                   +        ++E+                 H   IKL+I     + R    +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 153 RSYYRGAAGALMVID-VSHVK 172
           + Y       L+V+  V + K
Sbjct: 241 KPYEN----CLLVLLNVQNAK 257

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 7/88 (7%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQE 146
           K +++G  G GKS +        +       +G         +     + L +WD  GQ+
Sbjct: 5   KLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63

Query: 147 RFRAVT-----RSYYRGAAGALMVIDVS 169
            F            ++     + V DV 
Sbjct: 64  VFMENYFTKQKDHIFQMVQVLIHVFDVE 91

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDC----PHTIGVEFGTRIIEVHGEKIKLQIWDT 142
           F  + +G+ G+GKS L+      KF  +        + ++  T  ++    ++KL I  T
Sbjct: 43  FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVST 102

Query: 143 AG 144
            G
Sbjct: 103 VG 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.92
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.87
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.86
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.85
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.85
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.85
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.85
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.85
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.85
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.85
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.85
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.85
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.85
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.85
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.84
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.84
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.84
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.84
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.84
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.84
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.84
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.84
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.84
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.84
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.84
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.84
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.84
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.84
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.84
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.84
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.84
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.84
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.84
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.84
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.84
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.84
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.84
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.83
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.83
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.83
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.83
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.83
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.83
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.83
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.83
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.83
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.82
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.82
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.82
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.82
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.82
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.82
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.82
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.82
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.82
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.82
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.82
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.82
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.82
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.81
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.81
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.81
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.81
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.81
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.81
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.81
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.81
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.81
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.81
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.81
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.8
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.8
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.8
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.8
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.8
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.8
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.8
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.8
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.8
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.79
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.79
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.79
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.78
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.78
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.78
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.78
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.78
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.78
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.78
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.78
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.78
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.78
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.77
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.77
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.77
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.77
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.76
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.76
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.75
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.6
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.75
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.74
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.74
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.74
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.74
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.73
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.72
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.69
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.69
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.69
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.68
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.68
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.65
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.65
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.65
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.64
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.6
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.59
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.59
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.58
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.58
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.58
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.56
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.56
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.56
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.54
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.54
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.53
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.53
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.52
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.5
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.5
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.49
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.46
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.46
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.45
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.43
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.41
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.4
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.4
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.38
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.38
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.36
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.36
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.35
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.35
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.34
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.33
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.33
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.33
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.33
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.32
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.32
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.31
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.31
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.3
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.29
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.29
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.29
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.29
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.28
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.28
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.27
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.27
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.27
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.26
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.26
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.25
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.25
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.25
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.23
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.22
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.21
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.21
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.21
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.21
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.2
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.2
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.19
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.16
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.16
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.15
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.14
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.13
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.12
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.12
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.11
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.11
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.09
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.0
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.94
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.93
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.8
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.8
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.79
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.68
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.65
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.63
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.63
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.6
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.6
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.58
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.53
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.51
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.5
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.49
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.49
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.48
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.47
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.47
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.46
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.46
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.46
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.46
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.46
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.46
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.45
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.45
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.45
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.45
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.44
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.44
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.43
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.43
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.43
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.42
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.42
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.41
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.41
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.41
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.4
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.4
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.4
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.4
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.4
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.39
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.39
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.39
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.39
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.39
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.39
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.38
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.37
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.37
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.37
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.36
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.36
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.36
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.36
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.36
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.36
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.35
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.35
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.35
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.33
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.33
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.32
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.31
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.31
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.31
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.31
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.31
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.29
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.29
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.29
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.28
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.28
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.27
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.27
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.27
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.27
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.26
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.25
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.25
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.25
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.25
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.24
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.24
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.24
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.24
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.23
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.23
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.23
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.22
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.22
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.21
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.2
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.2
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.19
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.19
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.19
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.18
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.18
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.17
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.16
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.16
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.16
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.14
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.13
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.12
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.12
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.11
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.11
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.08
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.06
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.06
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.05
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.04
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.03
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.03
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.03
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.01
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.0
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.2
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.94
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.92
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.92
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	97.91
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.89
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.89
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.83
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.83
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.81
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.8
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.8
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.79
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.79
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.78
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.75
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.73
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.71
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.7
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.68
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.64
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.62
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.61
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.61
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	97.58
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.58
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.51
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.49
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.49
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.47
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.46
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.44
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.41
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.38
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.35
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.34
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.3
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.22
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.2
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.14
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.13
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.12
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.08
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.05
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.03
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.89
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.86
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.85
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.85
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.84
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.83
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.81
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.8
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.79
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	96.79
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.79
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.77
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.76
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	96.75
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.74
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.71
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.7
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.7
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.66
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.66
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.65
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.63
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	96.62
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.62
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.61
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.6
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.6
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.58
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.57
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.57
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.57
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.54
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.53
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.52
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.5
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.47
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.47
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.46
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.46
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.45
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.43
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.43
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.43
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.42
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	96.4
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.4
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.39
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.38
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.38
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.38
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.38
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.37
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.36
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	96.35
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.34
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.33
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.32
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.31
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.3
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.3
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.28
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.28
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.28
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.28
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.27
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	96.27
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.26
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.26
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.26
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.23
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.21
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.21
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.2
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.19
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.19
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.19
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.19
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.19
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.18
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.18
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.17
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.17
1g6h_A	257	High-affinity branched-chain amino acid transport	96.17
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.16
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.16
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.16
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.14
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.14
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.14
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.14
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.13
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.13
1via_A	175	Shikimate kinase; structural genomics, transferase	96.12
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.12
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.12
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.12
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.12
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.11
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.11
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.11
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.11
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.1
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.1
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.09
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.09
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.07
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.07
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	96.06
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.06
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.06
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.06
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.05
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.04
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.03
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.03
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.02
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.01
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.01
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	96.01
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.98
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	95.98
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.97
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.96
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.96
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.95
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	95.95
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.94
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.94
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	95.93
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.92
3bos_A	242	Putative DNA replication factor; P-loop containing	95.92
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.92
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.91
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.91
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.91
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	95.89
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	95.89
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.88
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.88

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.92  E-value=1.2e-25  Score=164.19  Aligned_cols=90  Identities=37%  Similarity=0.684  Sum_probs=75.0

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...|||+++|++|||||||++||+.+.|...+.||++.++....+.+++..+.++||||+|+++|..+++.|++.+++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            35689999999999999999999999999999999999998888999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        91 lv~di~~~~S  100 (216)
T 4dkx_A           91 VVYDITNVNS  100 (216)
T ss_dssp             EEEETTCHHH
T ss_pred             EEeecchhHH
Confidence            9999999764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1e-21  Score=141.68  Aligned_cols=95  Identities=47%  Similarity=0.915  Sum_probs=85.3

Q ss_pred             CCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q psy13826         78 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR  157 (173)
Q Consensus        78 ~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~  157 (173)
                      ..+..++..+||+++|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+++|||+|+++|..++..+++
T Consensus        18 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~   97 (201)
T 2ew1_A           18 GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR   97 (201)
T ss_dssp             ----CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST
T ss_pred             CCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHh
Confidence            34455678899999999999999999999999999889999999888888889999999999999999999999999999


Q ss_pred             CCCEEEEEEeCCCCC
Q psy13826        158 GAAGALMVIDVSHVK  172 (173)
Q Consensus       158 ~~~~~ilv~d~t~~~  172 (173)
                      .+|++|+|||+++++
T Consensus        98 ~~d~~i~v~D~~~~~  112 (201)
T 2ew1_A           98 SANALILTYDITCEE  112 (201)
T ss_dssp             TCSEEEEEEETTCHH
T ss_pred             cCCEEEEEEECCCHH
Confidence            999999999999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=141.32  Aligned_cols=94  Identities=44%  Similarity=0.902  Sum_probs=75.1

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG  158 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~  158 (173)
                      .++..+..+||+++|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+.+||++|+++|..++..+++.
T Consensus        22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  101 (201)
T 2hup_A           22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS  101 (201)
T ss_dssp             ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred             cccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence            34556778999999999999999999999999988888999988878888889999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCCC
Q psy13826        159 AAGALMVIDVSHVK  172 (173)
Q Consensus       159 ~~~~ilv~d~t~~~  172 (173)
                      +|++|+|||+++++
T Consensus       102 ~d~iilv~D~~~~~  115 (201)
T 2hup_A          102 ANGAILAYDITKRS  115 (201)
T ss_dssp             CSEEEEEEETTBHH
T ss_pred             CCEEEEEEECCCHH
Confidence            99999999999864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.85  E-value=2.9e-21  Score=140.49  Aligned_cols=91  Identities=21%  Similarity=0.444  Sum_probs=79.1

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      .....+||+++|++|||||||+++|+++.+...+.+|++.++ ...+.+++..+.+.|||++|+++|..+++.+++.+|+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            345679999999999999999999999999999999999887 4566778889999999999999999999999999999


Q ss_pred             EEEEEeCCCCCC
Q psy13826        162 ALMVIDVSHVKE  173 (173)
Q Consensus       162 ~ilv~d~t~~~S  173 (173)
                      +|+|||+++++|
T Consensus       102 ~i~v~d~~~~~s  113 (214)
T 3q3j_B          102 VLLCFDISRPET  113 (214)
T ss_dssp             EEEEEETTCTHH
T ss_pred             EEEEEECcCHHH
Confidence            999999999764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.85  E-value=5.2e-21  Score=136.47  Aligned_cols=95  Identities=49%  Similarity=0.899  Sum_probs=85.5

Q ss_pred             CCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q psy13826         78 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR  157 (173)
Q Consensus        78 ~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~  157 (173)
                      ...+..+..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++
T Consensus        17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   96 (193)
T 2oil_A           17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR   96 (193)
T ss_dssp             ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence            34455678899999999999999999999999998888999998888888888999999999999999999999999999


Q ss_pred             CCCEEEEEEeCCCCC
Q psy13826        158 GAAGALMVIDVSHVK  172 (173)
Q Consensus       158 ~~~~~ilv~d~t~~~  172 (173)
                      .+|++|+|||+++++
T Consensus        97 ~~d~vi~v~D~~~~~  111 (193)
T 2oil_A           97 GAVGALLVFDLTKHQ  111 (193)
T ss_dssp             TCCEEEEEEETTCHH
T ss_pred             cCCEEEEEEECCCHH
Confidence            999999999999864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.85  E-value=5.1e-21  Score=136.49  Aligned_cols=94  Identities=64%  Similarity=1.074  Sum_probs=81.6

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG  158 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~  158 (173)
                      ........+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.
T Consensus        14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   93 (191)
T 2a5j_A           14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG   93 (191)
T ss_dssp             CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence            44556778999999999999999999999999988888899988888888889999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCCC
Q psy13826        159 AAGALMVIDVSHVK  172 (173)
Q Consensus       159 ~~~~ilv~d~t~~~  172 (173)
                      +|++|+|||+++++
T Consensus        94 ~d~ii~v~d~~~~~  107 (191)
T 2a5j_A           94 AAGALLVYDITRRE  107 (191)
T ss_dssp             CSEEEEEEETTCHH
T ss_pred             CCEEEEEEECCCHH
Confidence            99999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.85  E-value=6.9e-21  Score=133.70  Aligned_cols=90  Identities=34%  Similarity=0.651  Sum_probs=82.9

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            34569999999999999999999999999988999999888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      ++|||+++++
T Consensus        91 i~v~d~~~~~  100 (179)
T 2y8e_A           91 VVVYDITNTN  100 (179)
T ss_dssp             EEEEETTCHH
T ss_pred             EEEEECCCHH
Confidence            9999999864

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.85  E-value=2.3e-21  Score=154.96  Aligned_cols=86  Identities=19%  Similarity=0.251  Sum_probs=60.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc----------cccccch
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ERFRAVT  152 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----------~~~~~~~  152 (173)
                      ..+||+++|++|||||||++++++.++.  ..+..|. .+.....+..++.  .+.+|||+|+          +.|..++
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT-~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT-RDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCce-eeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            4689999999999999999999998763  3333332 2333345556665  4789999998          5555444


Q ss_pred             h-hhhcCCCEEEEEEeCCCCCC
Q psy13826        153 R-SYYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       153 ~-~~~~~~~~~ilv~d~t~~~S  173 (173)
                      . .+++.+|++|+|||+++..+
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s  272 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGII  272 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCC
T ss_pred             HHHHHHhCCEEEEEEcCCcCCc
Confidence            4 47889999999999998653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.85  E-value=8e-21  Score=134.49  Aligned_cols=91  Identities=66%  Similarity=1.186  Sum_probs=84.3

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      ..+..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            34678999999999999999999999999998899999988888888889999999999999999999999999999999


Q ss_pred             EEEEEeCCCCC
Q psy13826        162 ALMVIDVSHVK  172 (173)
Q Consensus       162 ~ilv~d~t~~~  172 (173)
                      +|+|||+++++
T Consensus        86 ~i~v~d~~~~~   96 (186)
T 2bme_A           86 ALLVYDITSRE   96 (186)
T ss_dssp             EEEEEETTCHH
T ss_pred             EEEEEECcCHH
Confidence            99999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.85  E-value=6.8e-21  Score=136.91  Aligned_cols=92  Identities=40%  Similarity=0.849  Sum_probs=84.7

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ..++..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            34567899999999999999999999999998888999998888888888999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCC
Q psy13826        161 GALMVIDVSHVK  172 (173)
Q Consensus       161 ~~ilv~d~t~~~  172 (173)
                      ++|+|||+++++
T Consensus        83 ~ii~v~d~~~~~   94 (203)
T 1zbd_A           83 GFILMYDITNEE   94 (203)
T ss_dssp             EEEEEEETTCHH
T ss_pred             EEEEEEECcCHH
Confidence            999999999864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.85  E-value=9.4e-21  Score=131.85  Aligned_cols=88  Identities=38%  Similarity=0.695  Sum_probs=82.1

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            35899999999999999999999999988899999988888888889999999999999999999999999999999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |||+++++
T Consensus        82 v~d~~~~~   89 (170)
T 1ek0_A           82 VYDVTKPQ   89 (170)
T ss_dssp             EEETTCHH
T ss_pred             EEecCChH
Confidence            99999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=9.5e-21  Score=135.28  Aligned_cols=92  Identities=39%  Similarity=0.648  Sum_probs=83.7

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      +.++..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|
T Consensus        18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (192)
T 2fg5_A           18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA   97 (192)
T ss_dssp             ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred             cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence            44567899999999999999999999999998889999999888888888888999999999999999999999999999


Q ss_pred             EEEEEEeCCCCC
Q psy13826        161 GALMVIDVSHVK  172 (173)
Q Consensus       161 ~~ilv~d~t~~~  172 (173)
                      ++|+|||+++++
T Consensus        98 ~iilV~d~~~~~  109 (192)
T 2fg5_A           98 AAVIVYDITKQD  109 (192)
T ss_dssp             EEEEEEETTCTH
T ss_pred             EEEEEEeCCCHH
Confidence            999999999875

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.85  E-value=1.3e-20  Score=134.00  Aligned_cols=92  Identities=41%  Similarity=0.864  Sum_probs=84.5

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ...+..+||+++|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|
T Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   96 (189)
T 2gf9_A           17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM   96 (189)
T ss_dssp             TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred             cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence            34567899999999999999999999999998888899998888788888899999999999999999999999999999


Q ss_pred             EEEEEEeCCCCC
Q psy13826        161 GALMVIDVSHVK  172 (173)
Q Consensus       161 ~~ilv~d~t~~~  172 (173)
                      ++|+|||+++++
T Consensus        97 ~ii~v~d~~~~~  108 (189)
T 2gf9_A           97 GFLLMYDIANQE  108 (189)
T ss_dssp             EEEEEEETTCHH
T ss_pred             EEEEEEECCCHH
Confidence            999999999864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.85  E-value=9.5e-21  Score=135.31  Aligned_cols=91  Identities=26%  Similarity=0.478  Sum_probs=81.6

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ......+||+++|++|||||||+++|+++.+...+.+|++.++. ..+.+++..+.+.+||++|++++..++..+++.+|
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            34567899999999999999999999999999999999998775 46678999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCC
Q psy13826        161 GALMVIDVSHVK  172 (173)
Q Consensus       161 ~~ilv~d~t~~~  172 (173)
                      ++|+|||+++++
T Consensus        97 ~~i~v~d~~~~~  108 (194)
T 3reg_A           97 VVLLCFAVNNRT  108 (194)
T ss_dssp             EEEEEEETTCHH
T ss_pred             EEEEEEECCCHH
Confidence            999999999865

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.84  E-value=8e-21  Score=133.58  Aligned_cols=91  Identities=54%  Similarity=0.966  Sum_probs=81.6

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      ..+..+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            45678999999999999999999999999988899999988888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCCCC
Q psy13826        162 ALMVIDVSHVK  172 (173)
Q Consensus       162 ~ilv~d~t~~~  172 (173)
                      +|+|||+++++
T Consensus        85 ~i~v~d~~~~~   95 (181)
T 3tw8_B           85 VIVVYDVTSAE   95 (181)
T ss_dssp             EEEEEETTCHH
T ss_pred             EEEEEECCCHH
Confidence            99999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.84  E-value=9.4e-21  Score=133.01  Aligned_cols=92  Identities=88%  Similarity=1.442  Sum_probs=84.3

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ...+..+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            34567899999999999999999999999998889999998888888888999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCC
Q psy13826        161 GALMVIDVSHVK  172 (173)
Q Consensus       161 ~~ilv~d~t~~~  172 (173)
                      ++|+|||+++++
T Consensus        90 ~~i~v~d~~~~~  101 (179)
T 1z0f_A           90 GALMVYDITRRS  101 (179)
T ss_dssp             EEEEEEETTCHH
T ss_pred             EEEEEEeCcCHH
Confidence            999999999864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.84  E-value=2.9e-21  Score=138.66  Aligned_cols=94  Identities=40%  Similarity=0.753  Sum_probs=72.9

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG  158 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~  158 (173)
                      ++......+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.
T Consensus        21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  100 (199)
T 2p5s_A           21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK  100 (199)
T ss_dssp             -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred             CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence            44455668999999999999999999999999988888999988888888899999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCCC
Q psy13826        159 AAGALMVIDVSHVK  172 (173)
Q Consensus       159 ~~~~ilv~d~t~~~  172 (173)
                      +|++|+|||+++++
T Consensus       101 ~d~iilv~d~~~~~  114 (199)
T 2p5s_A          101 ADGVLLLYDVTCEK  114 (199)
T ss_dssp             CSEEEEEEETTCHH
T ss_pred             CCEEEEEEECCChH
Confidence            99999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.84  E-value=8.2e-21  Score=134.66  Aligned_cols=88  Identities=27%  Similarity=0.514  Sum_probs=79.8

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++|+++.+...+.||.+..+ ...+.+++..+.+.+||++|++.|..+++.+++.+|++|
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            4579999999999999999999999999888999998776 456677888999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus        84 ~v~d~~~~~   92 (184)
T 1m7b_A           84 ICFDISRPE   92 (184)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECCCHH
Confidence            999999865

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.84  E-value=1.1e-20  Score=136.24  Aligned_cols=90  Identities=52%  Similarity=1.024  Sum_probs=84.1

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      .+..+||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            46789999999999999999999999999988999999888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      |+|||+++++
T Consensus        85 ilv~d~~~~~   94 (206)
T 2bcg_Y           85 IIVYDVTDQE   94 (206)
T ss_dssp             EEEEETTCHH
T ss_pred             EEEEECcCHH
Confidence            9999999864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.84  E-value=1.3e-21  Score=138.28  Aligned_cols=90  Identities=54%  Similarity=1.051  Sum_probs=59.4

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      .+..+||+++|++|||||||+++|+++.+...+.||++.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            46789999999999999999999999998888889999888878888899999999999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      |+|||+++++
T Consensus        85 i~v~d~~~~~   94 (183)
T 2fu5_C           85 MLVYDITNEK   94 (183)
T ss_dssp             EEEEETTCHH
T ss_pred             EEEEECcCHH
Confidence            9999999864

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=134.26  Aligned_cols=92  Identities=55%  Similarity=0.999  Sum_probs=85.4

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ...+..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus        11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (196)
T 3tkl_A           11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   90 (196)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence            34467899999999999999999999999999999999999888888889999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCC
Q psy13826        161 GALMVIDVSHVK  172 (173)
Q Consensus       161 ~~ilv~d~t~~~  172 (173)
                      ++|+|||+++++
T Consensus        91 ~~i~v~d~~~~~  102 (196)
T 3tkl_A           91 GIIVVYDVTDQE  102 (196)
T ss_dssp             EEEEEEETTCHH
T ss_pred             EEEEEEECcCHH
Confidence            999999999864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.84  E-value=7.3e-21  Score=135.39  Aligned_cols=92  Identities=46%  Similarity=0.835  Sum_probs=82.2

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AVTRSYYRGA  159 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~  159 (173)
                      ......+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++. .++..+++.+
T Consensus        15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (189)
T 1z06_A           15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV   94 (189)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence            334567999999999999999999999999998899999988888888889999999999999999998 8899999999


Q ss_pred             CEEEEEEeCCCCC
Q psy13826        160 AGALMVIDVSHVK  172 (173)
Q Consensus       160 ~~~ilv~d~t~~~  172 (173)
                      |++|+|||+++++
T Consensus        95 d~iilv~D~~~~~  107 (189)
T 1z06_A           95 HAVVFVYDMTNMA  107 (189)
T ss_dssp             CEEEEEEETTCHH
T ss_pred             CEEEEEEECcCHH
Confidence            9999999999864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.84  E-value=1.4e-20  Score=131.00  Aligned_cols=89  Identities=37%  Similarity=0.686  Sum_probs=82.8

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            45789999999999999999999999998888899998888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus        84 ~v~d~~~~~   92 (170)
T 1r2q_A           84 VVYDITNEE   92 (170)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECCCHH
Confidence            999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.84  E-value=1.4e-20  Score=132.84  Aligned_cols=88  Identities=36%  Similarity=0.536  Sum_probs=81.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            3578999999999999999999999999999999999887 667788999999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus        83 ~v~d~~~~~   91 (181)
T 3t5g_A           83 LVYSVTSIK   91 (181)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECCCHH
Confidence            999999865

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.84  E-value=5.8e-21  Score=133.15  Aligned_cols=89  Identities=39%  Similarity=0.761  Sum_probs=76.1

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      +..+||+++|++|||||||+++++++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            46799999999999999999999999998888999998888788888899999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus        84 ~v~d~~~~~   92 (170)
T 1z08_A           84 LVYDITDED   92 (170)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECcCHH
Confidence            999999864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.84  E-value=1e-20  Score=131.50  Aligned_cols=89  Identities=38%  Similarity=0.752  Sum_probs=82.4

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      +..+||+++|++|||||||+++++++.+...+.+|++.++....+.+++..+.+.+||++|++.+..++..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            35789999999999999999999999998889999998888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus        83 ~v~d~~~~~   91 (168)
T 1z2a_A           83 LVFSTTDRE   91 (168)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECcCHH
Confidence            999999864

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.84  E-value=1.1e-20  Score=133.61  Aligned_cols=91  Identities=34%  Similarity=0.506  Sum_probs=83.1

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ......+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            3455689999999999999999999999999999999999877 667788999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCC
Q psy13826        161 GALMVIDVSHVK  172 (173)
Q Consensus       161 ~~ilv~d~t~~~  172 (173)
                      ++++|||+++++
T Consensus        92 ~~i~v~d~~~~~  103 (183)
T 3kkq_A           92 GFLIVYSVTDKA  103 (183)
T ss_dssp             EEEEEEETTCHH
T ss_pred             EEEEEEECCCHH
Confidence            999999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.84  E-value=1.3e-20  Score=132.27  Aligned_cols=90  Identities=46%  Similarity=0.796  Sum_probs=80.0

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            45679999999999999999999999999888899999888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      ++|||+++++
T Consensus        84 i~v~d~~~~~   93 (177)
T 1wms_A           84 LLTFSVDDSQ   93 (177)
T ss_dssp             EEEEETTCHH
T ss_pred             EEEEECcCHH
Confidence            9999999864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.84  E-value=5.1e-21  Score=137.66  Aligned_cols=94  Identities=63%  Similarity=1.120  Sum_probs=73.2

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG  158 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~  158 (173)
                      ....++..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.
T Consensus        18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~   97 (200)
T 2o52_A           18 GSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   97 (200)
T ss_dssp             ----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhcc
Confidence            34456778999999999999999999999999988888999988888888889999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCCC
Q psy13826        159 AAGALMVIDVSHVK  172 (173)
Q Consensus       159 ~~~~ilv~d~t~~~  172 (173)
                      +|++|+|||+++++
T Consensus        98 ~d~~i~v~d~~~~~  111 (200)
T 2o52_A           98 AAGALLVYDITSRE  111 (200)
T ss_dssp             CSEEEEEEETTCHH
T ss_pred             CCEEEEEEECcCHH
Confidence            99999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.84  E-value=1.8e-20  Score=130.56  Aligned_cols=89  Identities=43%  Similarity=0.745  Sum_probs=83.1

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45799999999999999999999999998889999999888888888999999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus        84 ~v~d~~~~~   92 (170)
T 1z0j_A           84 IVYDITKEE   92 (170)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECcCHH
Confidence            999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.84  E-value=8.6e-21  Score=137.22  Aligned_cols=89  Identities=27%  Similarity=0.502  Sum_probs=80.0

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+||++|+++|..++..+++.+|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            45679999999999999999999999999988899998776 45667788899999999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      |+|||+++++
T Consensus       104 ilv~D~~~~~  113 (205)
T 1gwn_A          104 LICFDISRPE  113 (205)
T ss_dssp             EEEEETTCHH
T ss_pred             EEEEECCCHH
Confidence            9999999865

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=1.5e-20  Score=133.91  Aligned_cols=91  Identities=53%  Similarity=0.884  Sum_probs=84.2

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      .....+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            34567999999999999999999999999998899999988888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCCCC
Q psy13826        162 ALMVIDVSHVK  172 (173)
Q Consensus       162 ~ilv~d~t~~~  172 (173)
                      +|+|||+++++
T Consensus        91 ii~v~d~~~~~  101 (195)
T 1x3s_A           91 VILVYDVTRRD  101 (195)
T ss_dssp             EEEEEETTCHH
T ss_pred             EEEEEECcCHH
Confidence            99999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=133.93  Aligned_cols=89  Identities=22%  Similarity=0.336  Sum_probs=75.6

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+++||++|++++..+ ..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            34679999999999999999999999999999999999877 455678899999999999999998875 6799999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      |+|||+++++|
T Consensus        96 ilv~d~~~~~s  106 (187)
T 3c5c_A           96 LVVYSVDSRQS  106 (187)
T ss_dssp             EEEEETTCHHH
T ss_pred             EEEEECCCHHH
Confidence            99999998653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.84  E-value=1.8e-20  Score=131.98  Aligned_cols=91  Identities=40%  Similarity=0.717  Sum_probs=82.9

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      .....+||+++|++|||||||+++++++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            34567999999999999999999999999988888999988888888889999999999999999999999999999999


Q ss_pred             EEEEEeCCCCC
Q psy13826        162 ALMVIDVSHVK  172 (173)
Q Consensus       162 ~ilv~d~t~~~  172 (173)
                      +|+|||+++++
T Consensus        88 ~i~v~d~~~~~   98 (181)
T 2efe_B           88 AIIVFDVTNQA   98 (181)
T ss_dssp             EEEEEETTCHH
T ss_pred             EEEEEECCCHH
Confidence            99999999864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.84  E-value=3.2e-21  Score=135.53  Aligned_cols=89  Identities=33%  Similarity=0.547  Sum_probs=80.6

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ...+||+++|++|||||||+++|+++.+...+.||++.++....+.+++ ..+.+.+||++|++++..++..+++.+|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            3569999999999999999999999998877888988777777788876 678999999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      |+|||+++++
T Consensus        84 i~v~d~~~~~   93 (178)
T 2hxs_A           84 LLVYDITNYQ   93 (178)
T ss_dssp             EEEEETTCHH
T ss_pred             EEEEECCCHH
Confidence            9999999864

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.1e-20  Score=138.14  Aligned_cols=91  Identities=58%  Similarity=1.003  Sum_probs=77.6

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      ..+..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|+++|..++..+++.+|+
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   88 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG   88 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence            35678999999999999999999999999988888999988888888889999999999999999999999999999999


Q ss_pred             EEEEEeCCCCC
Q psy13826        162 ALMVIDVSHVK  172 (173)
Q Consensus       162 ~ilv~d~t~~~  172 (173)
                      +|+|||+++++
T Consensus        89 vilV~D~~~~~   99 (223)
T 3cpj_B           89 ALIVYDISKSS   99 (223)
T ss_dssp             EEEEEC-CCHH
T ss_pred             EEEEEeCCCHH
Confidence            99999999864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.84  E-value=6.4e-21  Score=136.22  Aligned_cols=93  Identities=44%  Similarity=0.876  Sum_probs=77.2

Q ss_pred             CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q psy13826         80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA  159 (173)
Q Consensus        80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~  159 (173)
                      ....+..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            34566789999999999999999999999999888889999888888888899999999999999999999999999999


Q ss_pred             CEEEEEEeCCCCC
Q psy13826        160 AGALMVIDVSHVK  172 (173)
Q Consensus       160 ~~~ilv~d~t~~~  172 (173)
                      |++|+|||+++++
T Consensus       100 d~iilV~D~~~~~  112 (192)
T 2il1_A          100 KGIILVYDITKKE  112 (192)
T ss_dssp             SEEEEEEETTCHH
T ss_pred             CEEEEEEECcCHH
Confidence            9999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.83  E-value=9.3e-21  Score=131.97  Aligned_cols=88  Identities=53%  Similarity=1.016  Sum_probs=75.2

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++++++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999999988888999988877788888889999999999999999999999999999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |||+++++
T Consensus        82 v~d~~~~~   89 (170)
T 1g16_A           82 VYDITDER   89 (170)
T ss_dssp             EEETTCHH
T ss_pred             EEECCCHH
Confidence            99999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=2.2e-20  Score=131.46  Aligned_cols=92  Identities=46%  Similarity=0.884  Sum_probs=75.4

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA  159 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~  159 (173)
                      +..+..+||+++|++|||||||+++|+++.+. ..+.+|++.++....+.+++..+.+.+||++|++++..++..+++.+
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   84 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA   84 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence            44567899999999999999999999999885 46788999888777778899999999999999999999999999999


Q ss_pred             CEEEEEEeCCCCC
Q psy13826        160 AGALMVIDVSHVK  172 (173)
Q Consensus       160 ~~~ilv~d~t~~~  172 (173)
                      |++|+|||+++++
T Consensus        85 d~ii~v~d~~~~~   97 (180)
T 2g6b_A           85 HALLLLYDVTNKA   97 (180)
T ss_dssp             SEEEEEEETTCHH
T ss_pred             CEEEEEEECCCHH
Confidence            9999999999864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=2e-20  Score=133.57  Aligned_cols=89  Identities=26%  Similarity=0.440  Sum_probs=80.9

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            45679999999999999999999999999988999998776 45667788889999999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      |+|||+++++
T Consensus        94 i~v~d~~~~~  103 (194)
T 2atx_A           94 LICFSVVNPA  103 (194)
T ss_dssp             EEEEETTCHH
T ss_pred             EEEEECCCHH
Confidence            9999999875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.83  E-value=1.8e-20  Score=134.50  Aligned_cols=91  Identities=25%  Similarity=0.389  Sum_probs=72.0

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ......+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|+++|..++..+++++|
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            3445679999999999999999999999999888999998766 456678899999999999999999999999999999


Q ss_pred             EEEEEEeCCCCC
Q psy13826        161 GALMVIDVSHVK  172 (173)
Q Consensus       161 ~~ilv~d~t~~~  172 (173)
                      ++|+|||+++++
T Consensus        94 ~~i~v~d~~~~~  105 (201)
T 2q3h_A           94 IFLLCFSVVSPS  105 (201)
T ss_dssp             EEEEEEETTCHH
T ss_pred             EEEEEEECCCHH
Confidence            999999999865

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.83  E-value=9.4e-21  Score=137.68  Aligned_cols=99  Identities=27%  Similarity=0.476  Sum_probs=59.1

Q ss_pred             hccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q psy13826         73 SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT  152 (173)
Q Consensus        73 ~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~  152 (173)
                      +.|...........+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+|||+|++++..++
T Consensus        21 ~~~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~   99 (214)
T 2j1l_A           21 QSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLR   99 (214)
T ss_dssp             -----------CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC----------
T ss_pred             cccccccCCCCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHH
Confidence            334333333344579999999999999999999999999888888887665 4566788999999999999999999999


Q ss_pred             hhhhcCCCEEEEEEeCCCCC
Q psy13826        153 RSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       153 ~~~~~~~~~~ilv~d~t~~~  172 (173)
                      +.+++.+|++|+|||+++++
T Consensus       100 ~~~~~~~d~~i~v~d~~~~~  119 (214)
T 2j1l_A          100 PLFYPDASVLLLCFDVTSPN  119 (214)
T ss_dssp             -----CEEEEEEEEETTCHH
T ss_pred             HHHhccCCEEEEEEECcCHH
Confidence            99999999999999999864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.83  E-value=2.1e-20  Score=135.26  Aligned_cols=88  Identities=33%  Similarity=0.554  Sum_probs=78.2

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++|+++.+...+.||++..+ ...+.+++..+.+.+||++|+++|..+++.+++.+|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            3569999999999999999999999999888999998766 445677888999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus        86 lv~d~~~~~   94 (212)
T 2j0v_A           86 LAFSLISKA   94 (212)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECCCHH
Confidence            999999865

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.83  E-value=3.5e-20  Score=130.31  Aligned_cols=89  Identities=37%  Similarity=0.561  Sum_probs=81.3

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||+++|+++.+...+.+|.+..+. ..+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            345789999999999999999999999999999999998775 6677888889999999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      ++|||+++++
T Consensus        85 i~v~d~~~~~   94 (181)
T 2fn4_A           85 LLVFAINDRQ   94 (181)
T ss_dssp             EEEEETTCHH
T ss_pred             EEEEeCCCHH
Confidence            9999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.83  E-value=2.8e-20  Score=132.11  Aligned_cols=92  Identities=39%  Similarity=0.804  Sum_probs=82.1

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEECCe---------EEEEEEEeCCCcccccc
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG-TRIIEVHGE---------KIKLQIWDTAGQERFRA  150 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~l~i~D~~g~~~~~~  150 (173)
                      +..+..+||+++|++|||||||+++|+++.+...+.+|++.++. ...+.+++.         .+.+.+||++|++++..
T Consensus         6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   85 (195)
T 3bc1_A            6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS   85 (195)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred             cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence            34667899999999999999999999999998888999998876 556666665         78999999999999999


Q ss_pred             chhhhhcCCCEEEEEEeCCCCC
Q psy13826        151 VTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       151 ~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      ++..+++.+|++|+|||+++++
T Consensus        86 ~~~~~~~~~d~~i~v~d~~~~~  107 (195)
T 3bc1_A           86 LTTAFFRDAMGFLLLFDLTNEQ  107 (195)
T ss_dssp             HHHHTTTTCSEEEEEEETTCHH
T ss_pred             HHHHHHcCCCEEEEEEECCCHH
Confidence            9999999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.83  E-value=3.3e-20  Score=134.05  Aligned_cols=92  Identities=53%  Similarity=0.999  Sum_probs=81.7

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ...+..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            34566799999999999999999999999998888999998888888888999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCC
Q psy13826        161 GALMVIDVSHVK  172 (173)
Q Consensus       161 ~~ilv~d~t~~~  172 (173)
                      ++|+|||+++++
T Consensus        95 ~ii~v~d~~~~~  106 (213)
T 3cph_A           95 GIILVYDVTDER  106 (213)
T ss_dssp             EEEEEEETTCHH
T ss_pred             EEEEEEECCCHH
Confidence            999999999864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.82  E-value=3.2e-20  Score=133.58  Aligned_cols=90  Identities=41%  Similarity=0.742  Sum_probs=82.3

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            34679999999999999999999999999988999999888888888888899999999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      |+|||+++++
T Consensus        85 i~v~d~~~~~   94 (207)
T 1vg8_A           85 VLVFDVTAPN   94 (207)
T ss_dssp             EEEEETTCHH
T ss_pred             EEEEECCCHH
Confidence            9999999864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=1.7e-20  Score=136.41  Aligned_cols=112  Identities=21%  Similarity=0.311  Sum_probs=73.2

Q ss_pred             cccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCC--CCCCCCCceeeeeEEEEEEECCeEEEEE
Q psy13826         61 PITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQ  138 (173)
Q Consensus        61 ~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~  138 (173)
                      +..+.+.-|...+..+..........+||+++|++|||||||+++|++..  +...+. +++.++....+.+++..+.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d~~~~~i~~~~~~~~l~   90 (211)
T 2g3y_A           12 DLGTENLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATII   90 (211)
T ss_dssp             -----------------------CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEE
T ss_pred             ccccCCccccccccCCCcccccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-ccceeeEEEEEEECCeeeEEE
Confidence            34455555555555555555566778999999999999999999999644  344444 566666677778899999999


Q ss_pred             EEeCCCccc-cccchhhhhcCCCEEEEEEeCCCCCC
Q psy13826        139 IWDTAGQER-FRAVTRSYYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       139 i~D~~g~~~-~~~~~~~~~~~~~~~ilv~d~t~~~S  173 (173)
                      +|||+|++. +..+.+.+++.++++|+|||++|++|
T Consensus        91 ~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~s  126 (211)
T 2g3y_A           91 LLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS  126 (211)
T ss_dssp             EECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHH
T ss_pred             EeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHH
Confidence            999999887 55677788999999999999998753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=2.3e-21  Score=138.30  Aligned_cols=94  Identities=40%  Similarity=0.849  Sum_probs=86.0

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG  158 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~  158 (173)
                      .+...+..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.
T Consensus        16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (191)
T 3dz8_A           16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG   95 (191)
T ss_dssp             ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred             cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence            34556788999999999999999999999999988888999988888888888888999999999999999999999999


Q ss_pred             CCEEEEEEeCCCCC
Q psy13826        159 AAGALMVIDVSHVK  172 (173)
Q Consensus       159 ~~~~ilv~d~t~~~  172 (173)
                      +|++|+|||+++++
T Consensus        96 ~d~~i~v~d~~~~~  109 (191)
T 3dz8_A           96 AMGFILMYDITNEE  109 (191)
T ss_dssp             CCEEEEEEETTCHH
T ss_pred             CCEEEEEEECcCHH
Confidence            99999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.82  E-value=6e-20  Score=129.71  Aligned_cols=87  Identities=28%  Similarity=0.504  Sum_probs=79.2

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            468999999999999999999999999888889988766 4556788999999999999999999999999999999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |||+++++
T Consensus        83 v~d~~~~~   90 (186)
T 1mh1_A           83 CFSLVSPA   90 (186)
T ss_dssp             EEETTCHH
T ss_pred             EEECCChh
Confidence            99999864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.82  E-value=4.3e-20  Score=132.02  Aligned_cols=89  Identities=37%  Similarity=0.714  Sum_probs=79.9

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeE-----------------------------
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK-----------------------------  134 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-----------------------------  134 (173)
                      +..+||+++|++|||||||+++|+++.+...+.+|++.++....+.+++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            457999999999999999999999999998899999988877777777655                             


Q ss_pred             --------EEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        135 --------IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       135 --------~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                              +.+.+||++|++.+..++..+++.+|++|+|||+++++
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~  130 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSN  130 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHH
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence                    89999999999999999999999999999999999864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.82  E-value=1.6e-20  Score=136.36  Aligned_cols=94  Identities=39%  Similarity=0.823  Sum_probs=81.9

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCe----------EEEEEEEeCCCcccc
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE----------KIKLQIWDTAGQERF  148 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~l~i~D~~g~~~~  148 (173)
                      ....++..+||+++|++|||||||+++|+++.+...+.+|++.++....+.+++.          .+.+.+||++|++++
T Consensus        18 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~   97 (217)
T 2f7s_A           18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF   97 (217)
T ss_dssp             ---CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH
T ss_pred             cCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH
Confidence            3345677899999999999999999999999998888889998887777777766          789999999999999


Q ss_pred             ccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        149 RAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       149 ~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      ..++..+++.+|++|+|||+++++
T Consensus        98 ~~~~~~~~~~~d~iilV~D~~~~~  121 (217)
T 2f7s_A           98 RSLTTAFFRDAMGFLLMFDLTSQQ  121 (217)
T ss_dssp             HHHHHHHHTTCCEEEEEEETTCHH
T ss_pred             HhHHHHHhcCCCEEEEEEECcCHH
Confidence            999999999999999999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.82  E-value=3.3e-20  Score=128.84  Aligned_cols=86  Identities=31%  Similarity=0.521  Sum_probs=78.6

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++++++.+...+.+|.+..+. ..+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999999999998889999987763 5567788899999999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      ||+++++
T Consensus        82 ~d~~~~~   88 (167)
T 1c1y_A           82 YSITAQS   88 (167)
T ss_dssp             EETTCHH
T ss_pred             EECCCHH
Confidence            9999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.82  E-value=1e-20  Score=135.72  Aligned_cols=93  Identities=23%  Similarity=0.242  Sum_probs=75.0

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-VTRSYYRGA  159 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~  159 (173)
                      ......+||+++|++|||||||+++|++..+...+.++.+.+.....+.+++..+.+.+||++|++.+.. +++.+++.+
T Consensus        18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~   97 (195)
T 3cbq_A           18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG   97 (195)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence            3455679999999999999999999986555444455666666666778899999999999999998765 788899999


Q ss_pred             CEEEEEEeCCCCCC
Q psy13826        160 AGALMVIDVSHVKE  173 (173)
Q Consensus       160 ~~~ilv~d~t~~~S  173 (173)
                      |++|+|||+++++|
T Consensus        98 d~~ilv~d~~~~~s  111 (195)
T 3cbq_A           98 DAFLIVFSVTDRRS  111 (195)
T ss_dssp             SEEEEEEETTCHHH
T ss_pred             CEEEEEEECCCHHH
Confidence            99999999998753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.82  E-value=1.1e-20  Score=137.64  Aligned_cols=94  Identities=31%  Similarity=0.540  Sum_probs=85.7

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG  158 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~  158 (173)
                      .+......+||+++|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.
T Consensus         8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (221)
T 3gj0_A            8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ   87 (221)
T ss_dssp             STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence            44455678999999999999999999999888888888999988888888899999999999999999999999999999


Q ss_pred             CCEEEEEEeCCCCC
Q psy13826        159 AAGALMVIDVSHVK  172 (173)
Q Consensus       159 ~~~~ilv~d~t~~~  172 (173)
                      +|++|+|||+++++
T Consensus        88 ~~~~i~v~d~~~~~  101 (221)
T 3gj0_A           88 AQCAIIMFDVTSRV  101 (221)
T ss_dssp             CCEEEEEEETTCHH
T ss_pred             CCEEEEEEECCCHH
Confidence            99999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.82  E-value=4e-20  Score=148.52  Aligned_cols=85  Identities=18%  Similarity=0.255  Sum_probs=61.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERFRAV  151 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g----------~~~~~~~  151 (173)
                      ...+||+++|++|||||||++++++.+.  ...+. +...+.....+..++.  .+.+|||+|          +++|..+
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~-gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA-GTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCC-CeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            4578999999999999999999997652  22333 2233332344556665  688999999          6777766


Q ss_pred             hhh-hhcCCCEEEEEEeCCCC
Q psy13826        152 TRS-YYRGAAGALMVIDVSHV  171 (173)
Q Consensus       152 ~~~-~~~~~~~~ilv~d~t~~  171 (173)
                      +.. +++.+|++|+|+|+++.
T Consensus       270 ~~~~~~~~ad~~llviD~~~~  290 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEG  290 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTC
T ss_pred             HHHHHHhhCCEEEEEEeCCCC
Confidence            654 78999999999999874

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.82  E-value=3.8e-20  Score=133.02  Aligned_cols=89  Identities=28%  Similarity=0.488  Sum_probs=77.0

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            34689999999999999999999999999999999998877 56666778889999999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      |+|||+++++
T Consensus       100 i~v~d~~~~~  109 (201)
T 3oes_A          100 VLVYSVTSLH  109 (201)
T ss_dssp             EEEEETTCHH
T ss_pred             EEEEeCCCHH
Confidence            9999999864

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.82  E-value=1e-19  Score=130.85  Aligned_cols=88  Identities=31%  Similarity=0.505  Sum_probs=80.1

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++++++.+...+.+|++.++. ..+.+++..+.+.+||++|++++..++..+++.+|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            46789999999999999999999999999889999988774 34678888999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus       102 ~v~d~~~~~  110 (201)
T 2gco_A          102 MCFSIDSPD  110 (201)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECCCHH
Confidence            999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.82  E-value=7e-20  Score=130.18  Aligned_cols=86  Identities=22%  Similarity=0.373  Sum_probs=74.5

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ......+||+++|++|||||||+++|+++.+...+.+|.+ .+ ...+.+++..+.+.+|||+|++++.     +++.+|
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            3455689999999999999999999999999988888844 44 4677889999999999999998876     788999


Q ss_pred             EEEEEEeCCCCCC
Q psy13826        161 GALMVIDVSHVKE  173 (173)
Q Consensus       161 ~~ilv~d~t~~~S  173 (173)
                      ++++|||+++++|
T Consensus        88 ~~i~v~d~~~~~s  100 (184)
T 3ihw_A           88 AVVFVFSLEDEIS  100 (184)
T ss_dssp             EEEEEEETTCHHH
T ss_pred             EEEEEEECcCHHH
Confidence            9999999998753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.81  E-value=4.1e-20  Score=132.10  Aligned_cols=92  Identities=16%  Similarity=0.325  Sum_probs=72.8

Q ss_pred             CCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhh
Q psy13826         78 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYY  156 (173)
Q Consensus        78 ~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~  156 (173)
                      .........+||+++|++|||||||+++|+++.+.. .+.+|++....  .  ++...+.+.+|||+|++++..++..++
T Consensus         9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~   84 (199)
T 4bas_A            9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--T--FEKGRVAFTVFDMGGAKKFRGLWETYY   84 (199)
T ss_dssp             -------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--E--EEETTEEEEEEEECCSGGGGGGGGGGC
T ss_pred             ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--E--EEeCCEEEEEEECCCCHhHHHHHHHHH
Confidence            345566778999999999999999999999999988 88999985443  2  334567899999999999999999999


Q ss_pred             cCCCEEEEEEeCCCCCC
Q psy13826        157 RGAAGALMVIDVSHVKE  173 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~~S  173 (173)
                      +.+|++|+|||+++++|
T Consensus        85 ~~~d~ii~v~D~~~~~s  101 (199)
T 4bas_A           85 DNIDAVIFVVDSSDHLR  101 (199)
T ss_dssp             TTCSEEEEEEETTCGGG
T ss_pred             hcCCEEEEEEECCcHHH
Confidence            99999999999999764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.81  E-value=5.5e-21  Score=137.45  Aligned_cols=89  Identities=31%  Similarity=0.536  Sum_probs=51.9

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhC--CCCCCCCCceeeeeEEEEEEECCe--EEEEEEEeCCCccccccchhhhhcCC
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVHGE--KIKLQIWDTAGQERFRAVTRSYYRGA  159 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~l~i~D~~g~~~~~~~~~~~~~~~  159 (173)
                      ...+||+++|++|||||||+++|+++  .+...+.+|++.++....+.+++.  .+.+.+||++|++.+..++..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999999999  888888999987777777888877  89999999999999999999999999


Q ss_pred             CEEEEEEeCCCCC
Q psy13826        160 AGALMVIDVSHVK  172 (173)
Q Consensus       160 ~~~ilv~d~t~~~  172 (173)
                      |++|+|||+++++
T Consensus        98 d~~i~v~d~~~~~  110 (208)
T 2yc2_C           98 YYAILVFDVSSME  110 (208)
T ss_dssp             CEEEEEEETTCHH
T ss_pred             cEEEEEEECCCHH
Confidence            9999999999864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.81  E-value=4.5e-20  Score=129.80  Aligned_cols=82  Identities=20%  Similarity=0.319  Sum_probs=72.5

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++|+++.+.. +.||++..+ ...+.+++..+.+++||++|+++     ..+++++|++|+
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            46899999999999999999999999876 788888665 56777899999999999999986     568899999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        79 v~D~~~~~s   87 (178)
T 2iwr_A           79 VFSLEDENS   87 (178)
T ss_dssp             EEETTCHHH
T ss_pred             EEECcCHHH
Confidence            999998753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.81  E-value=2.4e-20  Score=131.27  Aligned_cols=90  Identities=40%  Similarity=0.752  Sum_probs=68.0

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      ....+||+++|++|||||||+++++++.+...+.++++.++....+.++ +..+.+.+||++|++.+..++..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            3457999999999999999999999999988899999888877777776 667899999999999999999999999999


Q ss_pred             EEEEEeCCCCC
Q psy13826        162 ALMVIDVSHVK  172 (173)
Q Consensus       162 ~ilv~d~t~~~  172 (173)
                      +|+|||+++++
T Consensus        85 ~i~v~d~~~~~   95 (182)
T 1ky3_A           85 CVLVYDVTNAS   95 (182)
T ss_dssp             EEEEEETTCHH
T ss_pred             EEEEEECCChH
Confidence            99999999864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.81  E-value=1.1e-19  Score=131.06  Aligned_cols=88  Identities=26%  Similarity=0.471  Sum_probs=77.1

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4579999999999999999999999999988999887655 556678888999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus       107 ~v~d~~~~~  115 (204)
T 4gzl_A          107 ICFSLVSPA  115 (204)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECCCHH
Confidence            999999865

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.81  E-value=1.1e-19  Score=125.96  Aligned_cols=86  Identities=31%  Similarity=0.506  Sum_probs=78.4

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.++++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999999888888888655 56677889999999999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      ||+++++
T Consensus        82 ~d~~~~~   88 (167)
T 1kao_A           82 YSLVNQQ   88 (167)
T ss_dssp             EETTCHH
T ss_pred             EeCCCHH
Confidence            9999864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.81  E-value=1.1e-19  Score=126.12  Aligned_cols=86  Identities=34%  Similarity=0.627  Sum_probs=75.5

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++++++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            58999999999999999999999999888888888766 34567888899999999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      ||+++++
T Consensus        83 ~d~~~~~   89 (168)
T 1u8z_A           83 FSITEME   89 (168)
T ss_dssp             EETTCHH
T ss_pred             EECCCHH
Confidence            9999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=130.33  Aligned_cols=90  Identities=32%  Similarity=0.580  Sum_probs=80.5

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      .....+||+++|++|||||||+++++++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            344579999999999999999999999999888999988766 4566788889999999999999999999999999999


Q ss_pred             EEEEEeCCCCC
Q psy13826        162 ALMVIDVSHVK  172 (173)
Q Consensus       162 ~ilv~d~t~~~  172 (173)
                      +++|||+++++
T Consensus        89 ~i~v~d~~~~~   99 (206)
T 2bov_A           89 FLCVFSITEME   99 (206)
T ss_dssp             EEEEEETTCHH
T ss_pred             EEEEEECCCHH
Confidence            99999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=1.6e-19  Score=130.45  Aligned_cols=87  Identities=31%  Similarity=0.512  Sum_probs=72.9

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++|+++.+...+.+|.+..+.. .+.+++..+.+.+|||+|++++..++..+++.+|++|+
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            56899999999999999999999999988888998877644 46788889999999999999999999999999999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |||+++++
T Consensus       103 v~d~~~~~  110 (207)
T 2fv8_A          103 CFSVDSPD  110 (207)
T ss_dssp             EEETTCHH
T ss_pred             EEECCCHH
Confidence            99999864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.81  E-value=2e-20  Score=133.36  Aligned_cols=93  Identities=24%  Similarity=0.263  Sum_probs=75.8

Q ss_pred             CCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCC-----------CCCceeeeeEEEEE-EECCeEEEEEEEeCCCc
Q psy13826         78 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-----------CPHTIGVEFGTRII-EVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        78 ~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~l~i~D~~g~  145 (173)
                      .........+||+++|++|||||||++ ++.+.+...           +.+|++.++....+ .+++..+.+++|||+|+
T Consensus         6 ~~~~~~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~   84 (198)
T 3t1o_A            6 INFANREINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ   84 (198)
T ss_dssp             EETTTTEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC
T ss_pred             cchhccccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCCh
Confidence            344556778999999999999999995 455556555           34577766655544 56788899999999999


Q ss_pred             cccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        146 ERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       146 ~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      ++|..+++.+++.+|++|+|||++++
T Consensus        85 ~~~~~~~~~~~~~~d~~i~v~D~~~~  110 (198)
T 3t1o_A           85 VFYNASRKLILRGVDGIVFVADSAPN  110 (198)
T ss_dssp             CSCSHHHHHHTTTCCEEEEEEECCGG
T ss_pred             HHHHHHHHHHHhcCCEEEEEEECCcc
Confidence            99999999999999999999999843

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.81  E-value=1.9e-19  Score=127.46  Aligned_cols=87  Identities=33%  Similarity=0.562  Sum_probs=76.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++++++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..+++.+++.+|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999999888888886554 4566789999999999999999999999999999999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |||+++++
T Consensus        82 v~d~~~~~   89 (189)
T 4dsu_A           82 VFAINNTK   89 (189)
T ss_dssp             EEETTCHH
T ss_pred             EEECCCHH
Confidence            99999864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.80  E-value=1.7e-20  Score=132.18  Aligned_cols=87  Identities=32%  Similarity=0.562  Sum_probs=62.3

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++++++.+...+.+|++..+. ..+.+++..+.+++||++|++++..++..+++.+|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            4689999999999999999999999998888888886653 234567778889999999999999999999999999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |||+++++
T Consensus        86 v~d~~~~~   93 (182)
T 3bwd_D           86 AFSLISKA   93 (182)
T ss_dssp             EEETTCHH
T ss_pred             EEECCCHH
Confidence            99999865

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.80  E-value=1.7e-19  Score=127.33  Aligned_cols=89  Identities=33%  Similarity=0.583  Sum_probs=79.2

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            34579999999999999999999999999888888888766 44567888889999999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      ++|||+++++
T Consensus        94 i~v~d~~~~~  103 (187)
T 2a9k_A           94 LCVFSITEME  103 (187)
T ss_dssp             EEEEETTCHH
T ss_pred             EEEEECcCHH
Confidence            9999999864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.80  E-value=3e-19  Score=128.16  Aligned_cols=89  Identities=57%  Similarity=0.970  Sum_probs=79.6

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      +..+|++++|++|||||||++++++..+...+.||++.++....+.+++..+.+.+||++|++++..++..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            45799999999999999999999999998888899988888888889999999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||++++.
T Consensus        83 ~v~d~~~~~   91 (199)
T 2f9l_A           83 LVYDIAKHL   91 (199)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECcCHH
Confidence            999998753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.80  E-value=9.4e-21  Score=136.02  Aligned_cols=93  Identities=55%  Similarity=0.989  Sum_probs=82.1

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      ...+..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus        28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d  107 (199)
T 3l0i_B           28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH  107 (199)
T ss_dssp             CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence            34567899999999999999999999999988888888888888888889999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCC
Q psy13826        161 GALMVIDVSHVKE  173 (173)
Q Consensus       161 ~~ilv~d~t~~~S  173 (173)
                      ++|+|||+++++|
T Consensus       108 ~~i~v~d~~~~~s  120 (199)
T 3l0i_B          108 GIIVVYDVTDQES  120 (199)
T ss_dssp             EEEECC-CCCSHH
T ss_pred             EEEEEEECCCHHH
Confidence            9999999998753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.80  E-value=1.1e-19  Score=126.61  Aligned_cols=88  Identities=23%  Similarity=0.288  Sum_probs=63.3

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCCCEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-VTRSYYRGAAGALM  164 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~~~~il  164 (173)
                      .+||+++|++|||||||+++|++..+...+.++.+.+.....+.+++..+.+.+||++|++++.. +++.+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999998877766666666677777888899999999999999998875 77888999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        82 v~d~~~~~s   90 (169)
T 3q85_A           82 VFSVTDRRS   90 (169)
T ss_dssp             EEETTCHHH
T ss_pred             EEECCChHH
Confidence            999998653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.80  E-value=2.2e-19  Score=125.11  Aligned_cols=87  Identities=24%  Similarity=0.376  Sum_probs=77.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++++++.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            3589999999999999999999999988888888887663 455678888999999999999999999999999999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |||+++++
T Consensus        81 v~d~~~~~   88 (172)
T 2erx_A           81 VYSITSRQ   88 (172)
T ss_dssp             EEETTCHH
T ss_pred             EEECcCHH
Confidence            99999864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.80  E-value=1.6e-19  Score=128.42  Aligned_cols=87  Identities=22%  Similarity=0.467  Sum_probs=75.9

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||+++|+++.+...+.+|++.++..  +  +...+.+.+||++|++++..++..+++.+|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            3457999999999999999999999999988888999877643  2  23457889999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      |+|||+++++|
T Consensus        95 i~v~D~~~~~s  105 (188)
T 1zd9_A           95 VYMVDAADQEK  105 (188)
T ss_dssp             EEEEETTCGGG
T ss_pred             EEEEECCCHHH
Confidence            99999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.80  E-value=2.3e-19  Score=128.16  Aligned_cols=88  Identities=27%  Similarity=0.405  Sum_probs=78.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++|+++.+...+.++++..+. ..+..++..+.+.+|||+|++++..++..+++.+|+++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            34689999999999999999999999998888888886653 45667888999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus        85 ~v~d~~~~~   93 (199)
T 2gf0_A           85 LVFSVTSKQ   93 (199)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECcCHH
Confidence            999999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.80  E-value=5.3e-19  Score=126.30  Aligned_cols=91  Identities=57%  Similarity=0.974  Sum_probs=84.0

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      ..+..+|++++|++|||||||++++++..+...+.+|++.++....+.+++..+.+++||++|++++..++..+++.+++
T Consensus        25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~  104 (191)
T 1oix_A           25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG  104 (191)
T ss_dssp             CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence            45678999999999999999999999999998999999999888888999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCC
Q psy13826        162 ALMVIDVSHVK  172 (173)
Q Consensus       162 ~ilv~d~t~~~  172 (173)
                      +++|||++++.
T Consensus       105 ~i~v~d~~~~~  115 (191)
T 1oix_A          105 ALLVYDIAKHL  115 (191)
T ss_dssp             EEEEEETTCHH
T ss_pred             EEEEEECcCHH
Confidence            99999998753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.79  E-value=3.1e-19  Score=127.67  Aligned_cols=86  Identities=28%  Similarity=0.430  Sum_probs=77.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++. ..++..+++.+|++++
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil  104 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL  104 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence            468999999999999999999999999988999998766 45567888999999999999988 7788899999999999


Q ss_pred             EEeCCCCC
Q psy13826        165 VIDVSHVK  172 (173)
Q Consensus       165 v~d~t~~~  172 (173)
                      |||+++++
T Consensus       105 v~D~~~~~  112 (196)
T 2atv_A          105 VYDITDRG  112 (196)
T ss_dssp             EEETTCHH
T ss_pred             EEECcCHH
Confidence            99999864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.79  E-value=2.6e-19  Score=125.22  Aligned_cols=87  Identities=23%  Similarity=0.368  Sum_probs=67.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--cccchhhhhcCCCEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--FRAVTRSYYRGAAGA  162 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--~~~~~~~~~~~~~~~  162 (173)
                      ..+||+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||++|++.  +..+...+++.+|++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            4689999999999999999999998876544 3567677677788899999999999999988  567778899999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      ++|||+++++
T Consensus        82 i~v~d~~~~~   91 (175)
T 2nzj_A           82 VIVYSIADRG   91 (175)
T ss_dssp             EEEEETTCHH
T ss_pred             EEEEECCCHH
Confidence            9999999865

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.79  E-value=7.7e-19  Score=124.78  Aligned_cols=88  Identities=33%  Similarity=0.545  Sum_probs=68.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            4579999999999999999999999999888888887665 456678888999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus        98 ~v~d~~~~~  106 (190)
T 3con_A           98 CVFAINNSK  106 (190)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECcCHH
Confidence            999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.78  E-value=3.6e-19  Score=125.83  Aligned_cols=90  Identities=27%  Similarity=0.398  Sum_probs=72.3

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG  158 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~  158 (173)
                      ........+||+++|++|||||||+++|+++++ ..+.+|.+....  .+.+++  +.+.+||++|++++..++..+++.
T Consensus        14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~   88 (181)
T 2h17_A           14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTN   88 (181)
T ss_dssp             -------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTT
T ss_pred             ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcc
Confidence            344455689999999999999999999999988 566778875543  344544  788999999999999999999999


Q ss_pred             CCEEEEEEeCCCCCC
Q psy13826        159 AAGALMVIDVSHVKE  173 (173)
Q Consensus       159 ~~~~ilv~d~t~~~S  173 (173)
                      +|++|+|||+++++|
T Consensus        89 ~d~ii~v~D~~~~~s  103 (181)
T 2h17_A           89 TEFVIVVVDSTDRER  103 (181)
T ss_dssp             CCEEEEEEETTCTTT
T ss_pred             CCEEEEEEECCCHHH
Confidence            999999999999865

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.78  E-value=3e-19  Score=124.02  Aligned_cols=86  Identities=24%  Similarity=0.327  Sum_probs=54.3

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||++++++..+. ...++.+.++ ...+.+++..+.+.+||++|++.+..+++.+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            589999999999999999999876654 3455666665 45667899999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        80 ~d~~~~~s   87 (166)
T 3q72_A           80 YSVTDKGS   87 (166)
T ss_dssp             EETTCHHH
T ss_pred             EECCCHHH
Confidence            99998753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.78  E-value=1.1e-18  Score=121.52  Aligned_cols=85  Identities=24%  Similarity=0.472  Sum_probs=72.2

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++++++.+. .+.||++...  ..+.++  .+.+.+||++|++.+..++..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            34689999999999999999999999875 4677877543  344454  567899999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        80 ~v~d~~~~~s   89 (171)
T 1upt_A           80 YVVDSCDRDR   89 (171)
T ss_dssp             EEEETTCCTT
T ss_pred             EEEECCCHHH
Confidence            9999999865

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.78  E-value=8.5e-19  Score=121.17  Aligned_cols=86  Identities=35%  Similarity=0.620  Sum_probs=77.5

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            47999999999999999999999999888888887665 45667888899999999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      ||+++++
T Consensus        82 ~d~~~~~   88 (166)
T 2ce2_X           82 FAINNTK   88 (166)
T ss_dssp             EETTCHH
T ss_pred             EECCCHH
Confidence            9999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.78  E-value=5.7e-19  Score=125.34  Aligned_cols=84  Identities=27%  Similarity=0.488  Sum_probs=68.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++++++++. .+.||++...  ..+.+++  +.+.+||++|++++..++..+++.+|++|+
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            4689999999999999999999998887 6677887543  3444544  788999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        90 v~d~~~~~s   98 (187)
T 1zj6_A           90 VVDSTDRER   98 (187)
T ss_dssp             EEETTCTTT
T ss_pred             EEeCCCHHH
Confidence            999999865

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.78  E-value=3.2e-19  Score=123.64  Aligned_cols=82  Identities=23%  Similarity=0.557  Sum_probs=69.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++++++.+.. +.||++...  ..+..  ..+.+.+||++|++++..++..+++.+|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE--EEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE--EEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999988764 577887433  33333  4578999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        76 d~~~~~s   82 (164)
T 1r8s_A           76 DSNDRER   82 (164)
T ss_dssp             ETTCGGG
T ss_pred             ECCCHHH
Confidence            9999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.78  E-value=1.6e-18  Score=123.59  Aligned_cols=84  Identities=19%  Similarity=0.351  Sum_probs=71.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++++++.+. .+.||++..  ...+.+++  +.+.+|||+|++.+..+++.+++.+|++++
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            4579999999999999999999998875 567788764  34555665  789999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        97 v~d~~~~~s  105 (190)
T 1m2o_B           97 LVDAADPER  105 (190)
T ss_dssp             EEETTCGGG
T ss_pred             EEECCChHH
Confidence            999999864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.78  E-value=2e-18  Score=138.09  Aligned_cols=85  Identities=25%  Similarity=0.262  Sum_probs=56.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-----------  151 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~-----------  151 (173)
                      ..+|++++|++|||||||++++++...  ...++.+. .+.....+.+++.  .+.+|||+|+.++...           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT-~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTT-RDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCc-CCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            458999999999999999999998864  23333322 2222345566776  4689999997543221           


Q ss_pred             h-hhhhcCCCEEEEEEeCCCCC
Q psy13826        152 T-RSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       152 ~-~~~~~~~~~~ilv~d~t~~~  172 (173)
                      . ..+++.+|++++|+|+++..
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~  277 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGI  277 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCC
T ss_pred             HHHHHHhhCCEEEEEEeCCCCC
Confidence            1 24678899999999998753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.78  E-value=4.8e-19  Score=127.20  Aligned_cols=84  Identities=19%  Similarity=0.350  Sum_probs=64.5

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||++++.++.+. .+.||++.+.  ..+.+++  +.+.+|||+|+++++.+++.+++.+|++++
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            3579999999999999999999998874 5677887654  3455666  789999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        99 v~D~~~~~s  107 (198)
T 1f6b_A           99 LVDCADHER  107 (198)
T ss_dssp             EEETTCGGG
T ss_pred             EEECCCHHH
Confidence            999999764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.78  E-value=7.5e-19  Score=124.44  Aligned_cols=85  Identities=25%  Similarity=0.551  Sum_probs=72.9

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||++++++++ ...+.||++...  ..+.++  .+.+.+|||+|++++..++..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            456899999999999999999999988 677888888544  344454  467899999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        91 ~v~d~~~~~s  100 (186)
T 1ksh_A           91 WVVDSADRQR  100 (186)
T ss_dssp             EEEETTCGGG
T ss_pred             EEEECcCHHH
Confidence            9999999764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.77  E-value=1.7e-19  Score=128.00  Aligned_cols=86  Identities=28%  Similarity=0.466  Sum_probs=64.1

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC--CCCCCCCCceeeeeEEEEEEE---CCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEV---HGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      .+||+++|++|||||||+++|++.  .+...+.+|++.++....+.+   ++..+.+.+||++|+++|..+++.+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  566678889988876655443   346778999999999999999999999999


Q ss_pred             EEEEEEeCCCC
Q psy13826        161 GALMVIDVSHV  171 (173)
Q Consensus       161 ~~ilv~d~t~~  171 (173)
                      ++++|||++++
T Consensus        82 ~~i~v~d~~~~   92 (184)
T 2zej_A           82 LYLAVYDLSKG   92 (184)
T ss_dssp             EEEEEEEGGGC
T ss_pred             EEEEEEeCCcc
Confidence            99999999986

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.77  E-value=5.9e-19  Score=125.54  Aligned_cols=87  Identities=21%  Similarity=0.360  Sum_probs=72.2

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCC-CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQK-FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      .....+||+++|++|||||||+++|+++. +...+.+|++..  ...+.+++  +.+.+||++|++++..++..+++.+|
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ   92 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence            34567999999999999999999999988 677788888743  34445554  68899999999999999999999999


Q ss_pred             EEEEEEeCCCCC
Q psy13826        161 GALMVIDVSHVK  172 (173)
Q Consensus       161 ~~ilv~d~t~~~  172 (173)
                      ++|+|||+++++
T Consensus        93 ~ii~v~d~~~~~  104 (190)
T 2h57_A           93 AIIFVIDSSDRL  104 (190)
T ss_dssp             EEEEEEETTCHH
T ss_pred             EEEEEEECCCHH
Confidence            999999999864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.77  E-value=8.4e-19  Score=125.41  Aligned_cols=88  Identities=20%  Similarity=0.319  Sum_probs=69.3

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCC--CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCCCE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRAVTRSYYRGAAG  161 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-~~~~~~~~~~~~~~  161 (173)
                      ..+||+++|++|||||||+++|++..  +...+. +++.++....+.+++..+.+.+|||+|++. +..+++.+++.+++
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            46899999999999999999999643  444443 466666667778899999999999999876 55677889999999


Q ss_pred             EEEEEeCCCCCC
Q psy13826        162 ALMVIDVSHVKE  173 (173)
Q Consensus       162 ~ilv~d~t~~~S  173 (173)
                      +++|||++|++|
T Consensus        84 ~i~v~dv~~~~s   95 (192)
T 2cjw_A           84 YLIVYSITDRAS   95 (192)
T ss_dssp             EEEEEETTCHHH
T ss_pred             EEEEEECCCHHH
Confidence            999999998754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.77  E-value=2.5e-19  Score=130.08  Aligned_cols=91  Identities=32%  Similarity=0.554  Sum_probs=77.3

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      .....+||+++|++|||||||+++|+++.+...+.++.+.......+... +..+.+.+|||+|++.+..++..+++.+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            34567999999999999999999999999888888888877766555444 34489999999999999999999999999


Q ss_pred             EEEEEEeCCCCC
Q psy13826        161 GALMVIDVSHVK  172 (173)
Q Consensus       161 ~~ilv~d~t~~~  172 (173)
                      ++|+|||+++++
T Consensus        87 ~~i~v~d~~~~~   98 (218)
T 4djt_A           87 GAILFFDVTSRI   98 (218)
T ss_dssp             EEEEEEETTCHH
T ss_pred             EEEEEEeCCCHH
Confidence            999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.76  E-value=7.9e-19  Score=124.27  Aligned_cols=85  Identities=26%  Similarity=0.488  Sum_probs=70.9

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++++++.+ ..+.||+|...  ..+.++  .+.+.+||++|++.+..++..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            3468999999999999999999998764 44667777443  344455  467899999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        89 ~v~d~~~~~s   98 (181)
T 1fzq_A           89 YVIDSADRKR   98 (181)
T ss_dssp             EEEETTCGGG
T ss_pred             EEEECcCHHH
Confidence            9999998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.76  E-value=1.5e-18  Score=123.97  Aligned_cols=85  Identities=22%  Similarity=0.510  Sum_probs=66.0

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++++++++. .+.||++..  ...+..  ..+.+.+||++|++++..+++.+++.+|++|
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            34689999999999999999999988876 356677633  333344  3478999999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus       102 lv~D~~~~~s  111 (192)
T 2b6h_A          102 FVVDSNDRER  111 (192)
T ss_dssp             EEEETTCGGG
T ss_pred             EEEECCCHHH
Confidence            9999999764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.75  E-value=6.5e-18  Score=129.68  Aligned_cols=88  Identities=26%  Similarity=0.480  Sum_probs=80.0

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++++++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            3468999999999999999999999999989999998766 456678899999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus       232 ~v~d~~~~~  240 (332)
T 2wkq_A          232 ICFSLVSPA  240 (332)
T ss_dssp             EEEETTCHH
T ss_pred             EEEeCCCHH
Confidence            999999865

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.60  E-value=8.6e-20  Score=131.36  Aligned_cols=89  Identities=27%  Similarity=0.483  Sum_probs=79.2

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4579999999999999999999999999888888887665 445567788889999999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus       107 lv~D~~~~~s  116 (204)
T 3th5_A          107 ICFSLVSPAS  116 (204)
Confidence            9999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.75  E-value=1.5e-18  Score=123.27  Aligned_cols=85  Identities=20%  Similarity=0.450  Sum_probs=71.5

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++++++++.. +.||++...  ..+..+  .+.+.+|||+|++++..+++.+++.+|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            356899999999999999999999888754 567777443  334444  467899999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        95 ~v~d~~~~~s  104 (189)
T 2x77_A           95 YVVDSTDRDR  104 (189)
T ss_dssp             EEEETTCCTT
T ss_pred             EEEeCCCHHH
Confidence            9999999865

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.74  E-value=1.3e-18  Score=133.34  Aligned_cols=79  Identities=15%  Similarity=0.177  Sum_probs=65.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCC---CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc---chhhhhcCCCE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA---VTRSYYRGAAG  161 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~---~~~~~~~~~~~  161 (173)
                      ||+++|++|||||||++++.++.++.   .+.||+|.++..    ++ ..++++||||+||++|..   +++.||+++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            79999999999999999988764433   367889887753    22 458899999999999964   46899999999


Q ss_pred             EEEEEeCCCC
Q psy13826        162 ALMVIDVSHV  171 (173)
Q Consensus       162 ~ilv~d~t~~  171 (173)
                      +|+|||++++
T Consensus        76 ~IlV~Ditd~   85 (331)
T 3r7w_B           76 LVYVIDSQDE   85 (331)
T ss_dssp             EEEECCCSSC
T ss_pred             EEEEEECCch
Confidence            9999999986

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.74  E-value=1.4e-18  Score=124.39  Aligned_cols=90  Identities=24%  Similarity=0.398  Sum_probs=65.5

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEE--EE-CCeEEEEEEEeCCCccccccch---
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII--EV-HGEKIKLQIWDTAGQERFRAVT---  152 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~--~~-~~~~~~l~i~D~~g~~~~~~~~---  152 (173)
                      ........+||+++|++|||||||++++.+. +...  ++.+.++....+  .+ ++..+.+++||++|+++|....   
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   89 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY   89 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence            3455667899999999999999999987764 3332  444444332222  23 3667899999999999988776   


Q ss_pred             hhhhcCCCEEEEEEeCCCC
Q psy13826        153 RSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       153 ~~~~~~~~~~ilv~d~t~~  171 (173)
                      +.+++.+|++|+|||++++
T Consensus        90 ~~~~~~~~~~i~v~d~~~~  108 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDD  108 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSC
T ss_pred             ccccccCCEEEEEEECCCc
Confidence            8999999999999999986

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.74  E-value=2.3e-18  Score=121.44  Aligned_cols=85  Identities=26%  Similarity=0.499  Sum_probs=68.3

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++++++++ ..+.+|++...  ..+.+++  ..+.+||++|++++..++..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3568999999999999999999998887 55677887443  3444544  78899999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        91 ~v~d~~~~~s  100 (183)
T 1moz_A           91 FVVDSTDKDR  100 (183)
T ss_dssp             EEEETTCTTT
T ss_pred             EEEECCCHHH
Confidence            9999999864

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.74  E-value=4.7e-18  Score=123.03  Aligned_cols=85  Identities=16%  Similarity=0.228  Sum_probs=69.8

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCe-EEEEEEEeCCCcccccc-chhhhhcCCCE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQERFRA-VTRSYYRGAAG  161 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~g~~~~~~-~~~~~~~~~~~  161 (173)
                      ...+||+++|++|||||||+++|+++.+...+.++. .++..  +.+++. .+.+.+|||+|++++.. +++.+++.+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            346899999999999999999999999888776544 33332  556544 68899999999999987 88899999999


Q ss_pred             EEEEEeCCCC
Q psy13826        162 ALMVIDVSHV  171 (173)
Q Consensus       162 ~ilv~d~t~~  171 (173)
                      +|+|||+++.
T Consensus        82 ~i~v~d~~~~   91 (214)
T 2fh5_B           82 VVFVVDSAAF   91 (214)
T ss_dssp             EEEEEETTTH
T ss_pred             EEEEEECCCc
Confidence            9999999874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.73  E-value=8.8e-18  Score=117.82  Aligned_cols=86  Identities=20%  Similarity=0.255  Sum_probs=73.4

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++.  .+.+|||+|++++..++..+++.+|++|
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            45689999999999999999999999988777776665555555666665  4679999999999999999999999999


Q ss_pred             EEEeCCCC
Q psy13826        164 MVIDVSHV  171 (173)
Q Consensus       164 lv~d~t~~  171 (173)
                      +|||++++
T Consensus        84 ~v~d~~~~   91 (178)
T 2lkc_A           84 LVVAADDG   91 (178)
T ss_dssp             EEEETTCC
T ss_pred             EEEECCCC
Confidence            99999884

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.72  E-value=1.6e-17  Score=127.01  Aligned_cols=86  Identities=24%  Similarity=0.383  Sum_probs=70.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCC--CC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhhh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-----RAVTRSYY  156 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~  156 (173)
                      ..+||+++|++|||||||+++++++.  +. ..+.+|++..+..  +.+++ .+.+.+||++|++++     ..+++.++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            35899999999999999999999873  32 2466788776643  33444 678999999999998     78889999


Q ss_pred             cCCCEEEEEEeCCCCCC
Q psy13826        157 RGAAGALMVIDVSHVKE  173 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~~S  173 (173)
                      +++|++|+|||+++++|
T Consensus        79 ~~ad~vi~V~D~t~~~s   95 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEV   95 (307)
T ss_dssp             TTCSEEEEEEETTCSCH
T ss_pred             ccCCEEEEEEECCChhh
Confidence            99999999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.69  E-value=3.6e-17  Score=116.46  Aligned_cols=88  Identities=16%  Similarity=0.295  Sum_probs=62.8

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERFRAVT  152 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g----------~~~~~~~~  152 (173)
                      ....++|+++|++|||||||+++++++.+...+.++.+.+.......++.   .+.+|||+|          ++.+..++
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            34578999999999999999999999987777777777665555555544   588999999          78888888


Q ss_pred             hhhhcCC---CEEEEEEeCCCCCC
Q psy13826        153 RSYYRGA---AGALMVIDVSHVKE  173 (173)
Q Consensus       153 ~~~~~~~---~~~ilv~d~t~~~S  173 (173)
                      ..+++.+   |++++|||++++.+
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~  120 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPS  120 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCC
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCC
Confidence            8888887   99999999998653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.69  E-value=1.9e-16  Score=110.33  Aligned_cols=84  Identities=20%  Similarity=0.306  Sum_probs=62.9

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc--
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------AVTRSYYR--  157 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------~~~~~~~~--  157 (173)
                      .+||+++|++|||||||++++++..+...+.|+...+.....+.+++  ..+.+|||+|++++.      .+.+.+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            47999999999999999999999876555555555444455555555  478999999998875      34466775  


Q ss_pred             CCCEEEEEEeCCCC
Q psy13826        158 GAAGALMVIDVSHV  171 (173)
Q Consensus       158 ~~~~~ilv~d~t~~  171 (173)
                      +++++++|||+++.
T Consensus        81 ~~~~~i~v~D~~~~   94 (165)
T 2wji_A           81 KPDLVVNIVDATAL   94 (165)
T ss_dssp             CCSEEEEEEETTCH
T ss_pred             CCCEEEEEecCCch
Confidence            89999999999874

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.69  E-value=1.7e-17  Score=128.04  Aligned_cols=84  Identities=23%  Similarity=0.511  Sum_probs=65.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++|.++.+... .||++..+.  .+.  ...+.+.||||+|++.|..++..+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            467999999999999999999999887654 357665543  223  345789999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus       239 V~D~~~~~s  247 (329)
T 3o47_A          239 VVDSNDRER  247 (329)
T ss_dssp             EEETTCSSS
T ss_pred             EEECCchHH
Confidence            999999865

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.68  E-value=5.2e-18  Score=126.54  Aligned_cols=93  Identities=25%  Similarity=0.437  Sum_probs=68.8

Q ss_pred             CCCCcceeeEEEEEeCC---------CCChHHHHHHHHh---CCCCCCCCCce-eeeeEEEEE--------------EEC
Q psy13826         79 GQYSYSYIFKYIIIGDM---------GVGKSCLLHQFTE---QKFMPDCPHTI-GVEFGTRII--------------EVH  131 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~---------~vGKssl~~~~~~---~~~~~~~~~t~-~~~~~~~~~--------------~~~  131 (173)
                      ........+||+++|++         |||||||+++|++   +.+...+.+|+ +.++....+              .++
T Consensus        12 ~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~   91 (255)
T 3c5h_A           12 ENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED   91 (255)
T ss_dssp             TTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----
T ss_pred             CCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC
Confidence            33446678999999999         9999999999999   66777777775 444322211              246


Q ss_pred             CeEEEEEEEe-----------------------CCCccccccchhhhhc---------------------CCCEEEEEEe
Q psy13826        132 GEKIKLQIWD-----------------------TAGQERFRAVTRSYYR---------------------GAAGALMVID  167 (173)
Q Consensus       132 ~~~~~l~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~ilv~d  167 (173)
                      +..+.++|||                       ++|+++|..+++.+++                     +||++|+|||
T Consensus        92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D  171 (255)
T 3c5h_A           92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID  171 (255)
T ss_dssp             ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred             CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence            7788999999                       7888888888888887                     7999999999


Q ss_pred             CCCC
Q psy13826        168 VSHV  171 (173)
Q Consensus       168 ~t~~  171 (173)
                      ++++
T Consensus       172 ~t~~  175 (255)
T 3c5h_A          172 VSRG  175 (255)
T ss_dssp             CBC-
T ss_pred             CCCC
Confidence            9997

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.65  E-value=1.3e-15  Score=106.92  Aligned_cols=86  Identities=23%  Similarity=0.256  Sum_probs=63.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV--------TRS  154 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--------~~~  154 (173)
                      ..+||+++|++|||||||++++++..+.  ..+. +...++....+.+++.  .+.+|||+|++++...        ...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIA-GTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQ   79 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSST-TCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCC-CceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHH
Confidence            3479999999999999999999987642  2233 3333444556667765  4789999998754311        124


Q ss_pred             hhcCCCEEEEEEeCCCCCC
Q psy13826        155 YYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       155 ~~~~~~~~ilv~d~t~~~S  173 (173)
                      +++.+|++++|||+++++|
T Consensus        80 ~~~~ad~~i~v~D~~~~~s   98 (172)
T 2gj8_A           80 EIEQADRVLFMVDGTTTDA   98 (172)
T ss_dssp             HHHTCSEEEEEEETTTCCC
T ss_pred             HHHhCCEEEEEEECCCCCC
Confidence            6899999999999999865

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.65  E-value=6.8e-17  Score=114.92  Aligned_cols=97  Identities=19%  Similarity=0.225  Sum_probs=64.2

Q ss_pred             hhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCC---CCCCceeeeeEEEEEEECCeEEEEEEEeC
Q psy13826         66 NLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFGTRIIEVHGEKIKLQIWDT  142 (173)
Q Consensus        66 ~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~D~  142 (173)
                      .+.....+.............++|+++|++|||||||++++++..+..   .+.++.+.         +...+.+.+||+
T Consensus        28 ~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt   98 (193)
T 2ged_A           28 QWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDF   98 (193)
T ss_dssp             HHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEE
T ss_pred             HHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEEC
Confidence            333333333333333344567999999999999999999999987654   22233222         124457889999


Q ss_pred             CCccccccchhhhhcC----CCEEEEEEeCC-CC
Q psy13826        143 AGQERFRAVTRSYYRG----AAGALMVIDVS-HV  171 (173)
Q Consensus       143 ~g~~~~~~~~~~~~~~----~~~~ilv~d~t-~~  171 (173)
                      +|++.+...+..+++.    +|++|+|||++ ++
T Consensus        99 ~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~  132 (193)
T 2ged_A           99 PGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP  132 (193)
T ss_dssp             TTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH
T ss_pred             CCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc
Confidence            9999998888888876    89999999998 54

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.65  E-value=9.2e-16  Score=105.65  Aligned_cols=84  Identities=18%  Similarity=0.213  Sum_probs=59.9

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhhhcC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-------RAVTRSYYRG  158 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-------~~~~~~~~~~  158 (173)
                      .||+++|++|||||||+++++++.+.. ...+....+.....+..++.  .+.+||++|++.+       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            689999999999999999999987531 22223333344445555554  6789999999873       3445668899


Q ss_pred             CCEEEEEEeCCCCC
Q psy13826        159 AAGALMVIDVSHVK  172 (173)
Q Consensus       159 ~~~~ilv~d~t~~~  172 (173)
                      +|++++|||++++.
T Consensus        80 ~~~~i~v~d~~~~~   93 (161)
T 2dyk_A           80 AEVVLFAVDGRAEL   93 (161)
T ss_dssp             CSEEEEEEESSSCC
T ss_pred             CCEEEEEEECCCcc
Confidence            99999999999853

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.64  E-value=1e-16  Score=116.26  Aligned_cols=82  Identities=22%  Similarity=0.365  Sum_probs=66.7

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCC---CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC-
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG-  158 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~-  158 (173)
                      ....++|+++|++|||||||+++++++.+..   .+.++++.++         ..+.+.+||++|++.+...+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            3457899999999999999999999988754   3455554333         44578999999999999888888887 


Q ss_pred             ---CCEEEEEEeCC-CCCC
Q psy13826        159 ---AAGALMVIDVS-HVKE  173 (173)
Q Consensus       159 ---~~~~ilv~d~t-~~~S  173 (173)
                         ++++|+|||++ ++++
T Consensus        80 ~~~~~~~i~v~D~~~~~~~   98 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKK   98 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTC
T ss_pred             cccCCEEEEEEECCCChHH
Confidence               89999999999 6653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=1.8e-15  Score=107.00  Aligned_cols=84  Identities=20%  Similarity=0.290  Sum_probs=65.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc-
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------AVTRSYYR-  157 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------~~~~~~~~-  157 (173)
                      ..+||+++|++|||||||++++++..+...+.|+...+.....+..++  ..+.+|||+|++.+.      .++..+++ 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            468999999999999999999998765544445555555555555554  678999999998875      34566665 


Q ss_pred             -CCCEEEEEEeCCC
Q psy13826        158 -GAAGALMVIDVSH  170 (173)
Q Consensus       158 -~~~~~ilv~d~t~  170 (173)
                       .++++++|+|.++
T Consensus        84 ~~~~~~i~v~d~~~   97 (188)
T 2wjg_A           84 EKPDLVVNIVDATA   97 (188)
T ss_dssp             HCCSEEEEEEEGGG
T ss_pred             cCCCEEEEEecchh
Confidence             5999999999875

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.59  E-value=5.7e-16  Score=126.61  Aligned_cols=90  Identities=24%  Similarity=0.342  Sum_probs=67.1

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEE------EEE--CCeEEEEEEEeCCCccccccchh
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRI------IEV--HGEKIKLQIWDTAGQERFRAVTR  153 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~------~~~--~~~~~~l~i~D~~g~~~~~~~~~  153 (173)
                      .....+||+++|++|||||||+++++++.+...+.+|++.++....      +.+  ++..+.+.+||++|++.+..+.+
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            4556799999999999999999999999998889999998876542      111  33467899999999999999999


Q ss_pred             hhhcCCCEEEEEEeCCCC
Q psy13826        154 SYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       154 ~~~~~~~~~ilv~d~t~~  171 (173)
                      .+++.++++|+|||+++.
T Consensus       117 ~~l~~~d~ii~V~D~s~~  134 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD  134 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG
T ss_pred             HHccCCcEEEEEEeCCCc
Confidence            999999999999999864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.59  E-value=3.4e-15  Score=109.18  Aligned_cols=87  Identities=20%  Similarity=0.158  Sum_probs=59.2

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc------cc----cccchh
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ------ER----FRAVTR  153 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~------~~----~~~~~~  153 (173)
                      ...+||+++|++|||||||+++|+++.+.....+....+.....+..+  ...+.+|||+|+      ++    +.. +.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTT-IT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence            456899999999999999999999987642222211112222222233  367899999998      33    222 23


Q ss_pred             hhhcCCCEEEEEEeCCCCCC
Q psy13826        154 SYYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       154 ~~~~~~~~~ilv~d~t~~~S  173 (173)
                      .++..+|++|+|||++++.|
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s  123 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCG  123 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTS
T ss_pred             HhhccccEEEEEEecccccC
Confidence            45788999999999999754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.58  E-value=3.1e-15  Score=110.26  Aligned_cols=91  Identities=18%  Similarity=0.218  Sum_probs=61.2

Q ss_pred             CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCC--ceeeeeEEEEEEECCeEEEEEEEeCCCc-----------c
Q psy13826         80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH--TIGVEFGTRIIEVHGEKIKLQIWDTAGQ-----------E  146 (173)
Q Consensus        80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~g~-----------~  146 (173)
                      +......+||+++|++|||||||++++++..+.....+  ++........+.+++.  .+.||||||.           +
T Consensus        23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~  100 (239)
T 3lxx_A           23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSK  100 (239)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHH
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHH
Confidence            33445689999999999999999999999887665544  2333333444455554  6789999993           3


Q ss_pred             ccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        147 RFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       147 ~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      .+......+++.+|++|+|+|+++..
T Consensus       101 ~~~~~~~~~~~~~~~~l~v~d~~~~~  126 (239)
T 3lxx_A          101 EIIRCILLTSPGPHALLLVVPLGRYT  126 (239)
T ss_dssp             HHHHHHHHTTTCCSEEEEEEETTCCS
T ss_pred             HHHHHHHhcCCCCcEEEEEeeCCCCC
Confidence            34444455667899999999997643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.58  E-value=5.5e-15  Score=110.39  Aligned_cols=86  Identities=20%  Similarity=0.238  Sum_probs=63.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhhh--
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRSYY--  156 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------~~~~~~--  156 (173)
                      ..+||+++|++|||||||+++|++..+.....|....+.....+...  ...+.+|||||+..+..      +...++  
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            46899999999999999999999877543333333333333333333  36789999999988764      335566  


Q ss_pred             cCCCEEEEEEeCCCCC
Q psy13826        157 RGAAGALMVIDVSHVK  172 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~~  172 (173)
                      ..+|++++|+|+++.+
T Consensus        82 ~~~d~ii~V~D~t~~~   97 (258)
T 3a1s_A           82 GDADLVILVADSVNPE   97 (258)
T ss_dssp             SCCSEEEEEEETTSCH
T ss_pred             cCCCEEEEEeCCCchh
Confidence            5899999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.58  E-value=5.8e-15  Score=104.68  Aligned_cols=88  Identities=19%  Similarity=0.277  Sum_probs=67.5

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC----------cccccc
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERFRA  150 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g----------~~~~~~  150 (173)
                      .+....+||+++|++|||||||+++++++.+ ..+.++.+.+........+.   .+.+|||+|          ++.+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence            3445678999999999999999999999873 44555666555444433433   477999999          777888


Q ss_pred             chhhhhcCC---CEEEEEEeCCCCC
Q psy13826        151 VTRSYYRGA---AGALMVIDVSHVK  172 (173)
Q Consensus       151 ~~~~~~~~~---~~~ilv~d~t~~~  172 (173)
                      +++.+++.+   +++++|+|.++..
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~  118 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPP  118 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCC
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCC
Confidence            888888876   9999999998753

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.56  E-value=1.4e-15  Score=114.35  Aligned_cols=84  Identities=24%  Similarity=0.291  Sum_probs=62.3

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc--
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------AVTRSYYR--  157 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------~~~~~~~~--  157 (173)
                      .+||+++|++|||||||+++|++..+.....|  |.++......++. ...+.+|||||++.+.      .+.+.|+.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            57999999999999999999998763332223  3333333334454 5678999999998875      45566776  


Q ss_pred             CCCEEEEEEeCCCCC
Q psy13826        158 GAAGALMVIDVSHVK  172 (173)
Q Consensus       158 ~~~~~ilv~d~t~~~  172 (173)
                      .+|++++|||+++.+
T Consensus        80 ~~d~vi~V~D~t~~e   94 (272)
T 3b1v_A           80 RADSILNVVDATNLE   94 (272)
T ss_dssp             CCSEEEEEEEGGGHH
T ss_pred             CCCEEEEEecCCchH
Confidence            599999999998753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.56  E-value=4.8e-16  Score=109.98  Aligned_cols=80  Identities=25%  Similarity=0.250  Sum_probs=62.9

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccchhhh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG-----------QERFRAVTRSY  155 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g-----------~~~~~~~~~~~  155 (173)
                      +||+++|++|||||||+++++++.+...+.|+.....  ..+...    .+.+|||+|           ++.+..++..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6999999999999999999999988777766554332  233333    688999999           77788888888


Q ss_pred             hcC-CCEEEEEEeCCCCC
Q psy13826        156 YRG-AAGALMVIDVSHVK  172 (173)
Q Consensus       156 ~~~-~~~~ilv~d~t~~~  172 (173)
                      ++. ++++++|||++|++
T Consensus        76 ~~~~~~~~~~v~~v~d~~   93 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGK   93 (190)
T ss_dssp             HHHHGGGCCEEEEEEETT
T ss_pred             HHhhhccCCEEEEEEcch
Confidence            887 88777777777654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.56  E-value=3.8e-15  Score=111.14  Aligned_cols=84  Identities=20%  Similarity=0.193  Sum_probs=65.2

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc----------chhhhh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----------VTRSYY  156 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----------~~~~~~  156 (173)
                      .+|+++|.+|||||||++++.+..+.....|++..+.....+..++.  .+.+|||||+..+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999988654444455555555556666665  788999999987753          556677


Q ss_pred             --cCCCEEEEEEeCCCCC
Q psy13826        157 --RGAAGALMVIDVSHVK  172 (173)
Q Consensus       157 --~~~~~~ilv~d~t~~~  172 (173)
                        +.+|++|+|+|+++++
T Consensus        80 ~~~~~d~vi~VvDas~~~   97 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLE   97 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHH
T ss_pred             hhCCCCEEEEEeeCCCch
Confidence              8999999999998753

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.54  E-value=1.4e-14  Score=108.75  Aligned_cols=84  Identities=18%  Similarity=0.270  Sum_probs=66.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhhh--c
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRSYY--R  157 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------~~~~~~--~  157 (173)
                      .+||+++|++|||||||++++++..+.....++.+.+.....+..++.  .+.+|||||+..+..      +...|+  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            579999999999999999999998765445555665665556666655  488999999988765      566666  6


Q ss_pred             CCCEEEEEEeCCCC
Q psy13826        158 GAAGALMVIDVSHV  171 (173)
Q Consensus       158 ~~~~~ilv~d~t~~  171 (173)
                      .+|++++|+|.++.
T Consensus        81 ~~d~vi~v~D~~~~   94 (271)
T 3k53_A           81 NADVIVDIVDSTCL   94 (271)
T ss_dssp             CCSEEEEEEEGGGH
T ss_pred             CCcEEEEEecCCcc
Confidence            89999999999874

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.54  E-value=2.6e-15  Score=109.10  Aligned_cols=89  Identities=17%  Similarity=0.228  Sum_probs=63.9

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCC----------ccccccc
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAG----------QERFRAV  151 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g----------~~~~~~~  151 (173)
                      ....++|+++|++|||||||+++++++.+.....++.+.+.......+. .....+.||||+|          ++.+..+
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            3457899999999999999999999987433333333333333334444 4446788999999          4555666


Q ss_pred             hhhhhcC---CCEEEEEEeCCCC
Q psy13826        152 TRSYYRG---AAGALMVIDVSHV  171 (173)
Q Consensus       152 ~~~~~~~---~~~~ilv~d~t~~  171 (173)
                      ...+++.   +|++++|+|.++.
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~  128 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRP  128 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSC
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCC
Confidence            6677766   7789999999875

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.53  E-value=2.9e-14  Score=108.69  Aligned_cols=85  Identities=24%  Similarity=0.312  Sum_probs=61.1

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRS  154 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--------~~~~~~~  154 (173)
                      ...+|+++|.+|||||||++++++..+...  ...|..... ...+.  ....++.+|||||+..        +......
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i-~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRL-RGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCE-EEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEE-EEEEE--eCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            456899999999999999999999886431  222322211 11222  2346789999999876        3445567


Q ss_pred             hhcCCCEEEEEEeCCCCC
Q psy13826        155 YYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       155 ~~~~~~~~ilv~d~t~~~  172 (173)
                      +++.+|++++|||++++.
T Consensus        83 ~l~~ad~il~VvD~~~~~  100 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPP  100 (301)
T ss_dssp             HTSSCSEEEEEEETTSCC
T ss_pred             HHhcCCEEEEEEECCCCC
Confidence            889999999999998753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.52  E-value=9.6e-14  Score=103.40  Aligned_cols=86  Identities=15%  Similarity=0.149  Sum_probs=61.3

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCC-CCCCCCCc-eeeeeEEEEEEECCeEEEEEEEeCCCccccccch--------
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQK-FMPDCPHT-IGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT--------  152 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--------  152 (173)
                      ....++|+++|++|||||||++++++.. +...+.++ +........+..++  ..+.||||||+..+....        
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            4456899999999999999999999887 55444443 33333333444444  468899999987653221        


Q ss_pred             ---hhhhcCCCEEEEEEeCCC
Q psy13826        153 ---RSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       153 ---~~~~~~~~~~ilv~d~t~  170 (173)
                         ..+++.+|++|+|||+++
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~  117 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGR  117 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTC
T ss_pred             HHHHhcCCCCcEEEEEEeCCC
Confidence               236789999999999985

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.50  E-value=6.7e-14  Score=111.81  Aligned_cols=83  Identities=24%  Similarity=0.273  Sum_probs=56.2

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccchhhhh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF---------RAVTRSYY  156 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~---------~~~~~~~~  156 (173)
                      .+|+++|.+|||||||+++|+++... ....|.+..+.....+.+++.  .+.+|||+|++..         ......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987642 122223333344455566665  4689999997642         33456789


Q ss_pred             cCCCEEEEEEeCCCC
Q psy13826        157 RGAAGALMVIDVSHV  171 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~  171 (173)
                      +.||++|+|||+++.
T Consensus        80 ~~ad~il~V~D~~~~   94 (439)
T 1mky_A           80 READLVLFVVDGKRG   94 (439)
T ss_dssp             TTCSEEEEEEETTTC
T ss_pred             HhCCEEEEEEECCCC
Confidence            999999999999875

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.50  E-value=1.5e-13  Score=102.67  Aligned_cols=84  Identities=17%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc-----
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR-----  157 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~-----  157 (173)
                      ..++|+++|++|||||||++++++..+  ...+.++.. ......+..++  ..+.+|||||++.+....+.+++     
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~-~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGL-RPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CC-CCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcce-eeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            469999999999999999999999874  233333221 22233334444  37899999999988766655554     


Q ss_pred             ----CCCEEEEEEeCCCC
Q psy13826        158 ----GAAGALMVIDVSHV  171 (173)
Q Consensus       158 ----~~~~~ilv~d~t~~  171 (173)
                          .+|++++|+|+++.
T Consensus       112 l~~~~~~~il~V~~~d~~  129 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVY  129 (262)
T ss_dssp             TTTCEECEEEEEEESSCS
T ss_pred             HhcCCCCEEEEEEcCCCC
Confidence                78999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.49  E-value=1.1e-13  Score=105.79  Aligned_cols=90  Identities=19%  Similarity=0.130  Sum_probs=62.7

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc---------
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR---------  149 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~---------  149 (173)
                      ......-.|+++|.+|||||||++++++..+...  ...+.. .........+ ....+.+|||||+..+.         
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~-~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~   82 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR-MRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSM   82 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCcee-eEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHH
Confidence            3445677999999999999999999999876532  121221 1112222222 15678899999986544         


Q ss_pred             -cchhhhhcCCCEEEEEEeCCCCC
Q psy13826        150 -AVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       150 -~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                       .....+++.+|++++|+|+++..
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~  106 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGW  106 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBS
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCC
Confidence             45567889999999999999864

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.46  E-value=1.1e-13  Score=104.20  Aligned_cols=84  Identities=19%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc----------chhhh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----------VTRSY  155 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----------~~~~~  155 (173)
                      .++|+++|.+|||||||++++++..+.....|++..+.....+..++.  .+.+|||||+..+..          +...|
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            589999999999999999999988754444444444444555555554  567899999987662          23333


Q ss_pred             h--cCCCEEEEEEeCCCC
Q psy13826        156 Y--RGAAGALMVIDVSHV  171 (173)
Q Consensus       156 ~--~~~~~~ilv~d~t~~  171 (173)
                      +  +.+|++|+|+|.++.
T Consensus        81 ~~~~~~d~ii~VvD~~~~   98 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNL   98 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGH
T ss_pred             HhhcCCCEEEEEecCCCh
Confidence            3  799999999999874

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.46  E-value=2e-14  Score=114.77  Aligned_cols=85  Identities=16%  Similarity=0.177  Sum_probs=55.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhhhcC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE--------RFRAVTRSYYRG  158 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~--------~~~~~~~~~~~~  158 (173)
                      .+|+++|++|||||||++++++..+. ...++.|.+.......+......+.+|||+|++        .+...+..+++.
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            68999999999999999999987653 233455554443333444444578999999985        556667788999


Q ss_pred             CCEEEEEEeCCCCC
Q psy13826        159 AAGALMVIDVSHVK  172 (173)
Q Consensus       159 ~~~~ilv~d~t~~~  172 (173)
                      ||++|+|+|+++..
T Consensus        83 ad~il~vvD~~~~~   96 (436)
T 2hjg_A           83 ADVIIFMVNGREGV   96 (436)
T ss_dssp             CSEEEEEEETTTCS
T ss_pred             CCEEEEEEeCCCCC
Confidence            99999999998753

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.45  E-value=1.1e-13  Score=111.39  Aligned_cols=86  Identities=20%  Similarity=0.181  Sum_probs=49.2

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch--------hh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT--------RS  154 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--------~~  154 (173)
                      ..+||+++|++|||||||+++|++.+.  ...+. ....+.....+.+++  +.+.+|||+|++.+...+        ..
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~-gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~  308 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMP-GTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM  308 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCC-CceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence            468999999999999999999998753  23333 222333344555655  468999999997765433        34


Q ss_pred             hhcCCCEEEEEEeCCCCCC
Q psy13826        155 YYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       155 ~~~~~~~~ilv~d~t~~~S  173 (173)
                      +++.+|++|+|||++++.+
T Consensus       309 ~~~~aD~vl~VvD~s~~~s  327 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERL  327 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSS
T ss_pred             hcccCCEEEEEEECCCCcc
Confidence            6889999999999998764

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.43  E-value=2.3e-13  Score=102.03  Aligned_cols=85  Identities=15%  Similarity=0.154  Sum_probs=58.3

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhh-------h--
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRS-------Y--  155 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~-------~--  155 (173)
                      ..++|+++|++|||||||++++++..+... .++.+.+.......+......+.+|||||++.+..+...       +  
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            468999999999999999999998875321 112222222222333334567899999999877544332       1  


Q ss_pred             hcCCCEEEEEEeCCC
Q psy13826        156 YRGAAGALMVIDVSH  170 (173)
Q Consensus       156 ~~~~~~~ilv~d~t~  170 (173)
                      .+.+|++|+|||++.
T Consensus       117 ~~~~d~il~v~~~d~  131 (270)
T 1h65_A          117 DKTIDVLLYVDRLDA  131 (270)
T ss_dssp             TCEECEEEEEEESSC
T ss_pred             cCCCCEEEEEEeCCC
Confidence            346999999999875

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.41  E-value=1.7e-13  Score=110.78  Aligned_cols=87  Identities=17%  Similarity=0.232  Sum_probs=63.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCC--CCCC---------------------------CCCceeeeeEEEEEEECCeEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FMPD---------------------------CPHTIGVEFGTRIIEVHGEKI  135 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~  135 (173)
                      ..+||+++|.+++|||||+++|++..  +...                           .....|.++......++....
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            57999999999999999999998651  1100                           001113333223333444556


Q ss_pred             EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      .+.||||+|+++|......+++.+|++|+|+|+++.
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g  147 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN  147 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence            889999999999998889999999999999999885

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.40  E-value=1.1e-12  Score=104.75  Aligned_cols=87  Identities=22%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCC-------------------------------CCCCCCceeeeeEEEEEEEC
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF-------------------------------MPDCPHTIGVEFGTRIIEVH  131 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~  131 (173)
                      ....++|+++|.+++|||||+++|+...-                               ..+..+.+..+....  .+.
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~--~~~   91 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRA--YFE   91 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEE--EEe
Confidence            34578999999999999999999965421                               111112233333333  333


Q ss_pred             CeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        132 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       132 ~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      .....+.||||||+++|......+++.+|++|+|+|+++.
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g  131 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG  131 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence            3445889999999999988888899999999999999874

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.40  E-value=7.8e-14  Score=111.94  Aligned_cols=86  Identities=16%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC--------ccccccchhhhh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG--------QERFRAVTRSYY  156 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g--------~~~~~~~~~~~~  156 (173)
                      ...+|+++|++|||||||++++++..+. ...++.|.+.......+......+.+|||+|        ++.+......++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            4579999999999999999999987653 2333555555554555555556899999999        777777888899


Q ss_pred             cCCCEEEEEEeCCCC
Q psy13826        157 RGAAGALMVIDVSHV  171 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~  171 (173)
                      +.+|++|+|+|.++.
T Consensus       101 ~~ad~il~VvD~~~~  115 (456)
T 4dcu_A          101 DEADVIIFMVNGREG  115 (456)
T ss_dssp             HHCSEEEEEEESSSC
T ss_pred             hhCCEEEEEEeCCCC
Confidence            999999999998763

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.38  E-value=2.6e-13  Score=109.38  Aligned_cols=85  Identities=28%  Similarity=0.337  Sum_probs=63.6

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc-cccc--------chhh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-RFRA--------VTRS  154 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~-~~~~--------~~~~  154 (173)
                      .++|+++|.+|||||||++++++.++  ..++..|. .+.....+.+++.  .+.+|||+|+. .+..        ....
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT-~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~  319 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT-RDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQ  319 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCS-SCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCee-eeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHH
Confidence            48999999999999999999998863  34444333 3333445566654  57899999987 5542        2346


Q ss_pred             hhcCCCEEEEEEeCCCCCC
Q psy13826        155 YYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       155 ~~~~~~~~ilv~d~t~~~S  173 (173)
                      +++.+|++|+|||++++.+
T Consensus       320 ~~~~aD~vl~VvD~s~~~s  338 (482)
T 1xzp_A          320 EIEKADIVLFVLDASSPLD  338 (482)
T ss_dssp             HHHHCSEEEEEEETTSCCC
T ss_pred             HhhcccEEEEEecCCCCCC
Confidence            7899999999999998753

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.38  E-value=7.6e-13  Score=99.47  Aligned_cols=87  Identities=26%  Similarity=0.473  Sum_probs=56.3

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCC-CCCCC-------CCceeeeeEEEEEEECCeEEEEEEEeCCCccc-------c
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQK-FMPDC-------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-------F  148 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~-~~~~~-------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-------~  148 (173)
                      ...++|+++|.+|+|||||++++++.. +...+       .+|++.+.....+..++..+.+.+|||||...       +
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            457999999999999999999977654 44444       56777666555555566668999999999732       3


Q ss_pred             ccch-------hhhhcC-------------CCEEEEEEeCCC
Q psy13826        149 RAVT-------RSYYRG-------------AAGALMVIDVSH  170 (173)
Q Consensus       149 ~~~~-------~~~~~~-------------~~~~ilv~d~t~  170 (173)
                      ..+.       ..|++.             +|+++++++.++
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~  127 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG  127 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCC
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCC
Confidence            3332       333433             779999987665

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.36  E-value=6.6e-13  Score=95.40  Aligned_cols=86  Identities=21%  Similarity=0.285  Sum_probs=53.5

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc----------cccchh
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----------FRAVTR  153 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~  153 (173)
                      ....+++++|++|||||||++++++..+...+.++.|.......+.+++   .+.+||++|...          +.....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            3457999999999999999999998876666667777655444444443   467999999742          222233


Q ss_pred             hhh---cCCCEEEEEEeCCCCC
Q psy13826        154 SYY---RGAAGALMVIDVSHVK  172 (173)
Q Consensus       154 ~~~---~~~~~~ilv~d~t~~~  172 (173)
                      .++   +.++++++++|++++.
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~  122 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPL  122 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCC
T ss_pred             HHHHhhhcccEEEEEEECCCCC
Confidence            344   5789999999998754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.36  E-value=1.9e-12  Score=103.33  Aligned_cols=88  Identities=19%  Similarity=0.276  Sum_probs=61.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCC--CCCC----------CCCce-------------------eeeeEEEEEEECC
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPD----------CPHTI-------------------GVEFGTRIIEVHG  132 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~----------~~~t~-------------------~~~~~~~~~~~~~  132 (173)
                      ...+||+++|..++|||||+++|+++.  +...          ..++.                   |.+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            456899999999999999999998764  1111          11221                   1111111222333


Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      ....+.||||||+++|...+..+++.+|++|+|+|+++.
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g  140 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG  140 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            445789999999999988888889999999999999875

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.35  E-value=2.1e-12  Score=97.81  Aligned_cols=34  Identities=26%  Similarity=0.488  Sum_probs=28.8

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM  112 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~  112 (173)
                      +.......++|+++|++|||||||++++++..+.
T Consensus        19 ~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~   52 (299)
T 2aka_B           19 GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFL   52 (299)
T ss_dssp             CCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence            3344556789999999999999999999998874

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.35  E-value=5.2e-13  Score=107.17  Aligned_cols=85  Identities=27%  Similarity=0.289  Sum_probs=53.9

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch--------hh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT--------RS  154 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--------~~  154 (173)
                      ..+||+++|++|||||||++++++.++  ..... +...++....+.+++.  .+.+|||+|...+....        ..
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~-gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLP-GTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCT-TCCHHHHHHEEEETTE--EEEECC--------------------C
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-CeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhh
Confidence            468999999999999999999998754  33333 3333333334456664  56899999986654332        23


Q ss_pred             hhcCCCEEEEEEeCCCCC
Q psy13826        155 YYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       155 ~~~~~~~~ilv~d~t~~~  172 (173)
                      +++.+|++|+|||.+++.
T Consensus       300 ~~~~aD~vl~VvD~s~~~  317 (462)
T 3geh_A          300 AANTADLVLLTIDAATGW  317 (462)
T ss_dssp             CCCSCSEEEEEEETTTCS
T ss_pred             hhhcCCEEEEEeccCCCC
Confidence            678899999999999864

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.34  E-value=1.1e-11  Score=98.09  Aligned_cols=87  Identities=16%  Similarity=0.108  Sum_probs=63.0

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEE-------------------EE---CCeEEEEEE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII-------------------EV---HGEKIKLQI  139 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~-------------------~~---~~~~~~l~i  139 (173)
                      .....++|+++|++++|||||++++++......    .+........                   ..   ......+.+
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF   79 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cCccccceeeccccccccceecccccccccccccccccceEEE
Confidence            345678999999999999999999998543221    1110000000                   00   112368999


Q ss_pred             EeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        140 WDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       140 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      |||||++.|......+++.+|++|+|+|+++..
T Consensus        80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~  112 (403)
T 3sjy_A           80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPF  112 (403)
T ss_dssp             EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCS
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence            999999999988889999999999999999853

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.33  E-value=2.8e-14  Score=116.12  Aligned_cols=86  Identities=17%  Similarity=0.226  Sum_probs=67.2

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ...+|+++|++++|||||+++|.+..+.....+++..++....+..++ ...+.||||||++.|..++..+++.+|++|+
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            357899999999999999999998776555555554444333333321 2268899999999999999999999999999


Q ss_pred             EEeCCCC
Q psy13826        165 VIDVSHV  171 (173)
Q Consensus       165 v~d~t~~  171 (173)
                      |||+++.
T Consensus        82 VVDa~dg   88 (537)
T 3izy_P           82 VVAADDG   88 (537)
T ss_dssp             ECBSSSC
T ss_pred             EEECCCC
Confidence            9999874

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.33  E-value=1.1e-12  Score=102.01  Aligned_cols=83  Identities=23%  Similarity=0.270  Sum_probs=56.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCC-CCC-CceeeeeEEEEEEECCe---------------EEEEEEEeCCCccccc
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCP-HTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERFR  149 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~~  149 (173)
                      ++|+++|.+|||||||++++++..+.. +++ .|+..+..  .+.+.+.               ...+++||++|+.++.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            689999999999999999999877432 222 13333222  2334432               1578999999987653


Q ss_pred             ----cchh---hhhcCCCEEEEEEeCCCC
Q psy13826        150 ----AVTR---SYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       150 ----~~~~---~~~~~~~~~ilv~d~t~~  171 (173)
                          .+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~  109 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFEN  109 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSCC
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCCC
Confidence                2332   357999999999999874

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.33  E-value=1.1e-12  Score=102.44  Aligned_cols=87  Identities=25%  Similarity=0.470  Sum_probs=51.8

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCC-CCCCC--------CCceeeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQK-FMPDC--------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ-------ER  147 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~-~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~-------~~  147 (173)
                      ...++|+++|++|+|||||++++++.. +...+        .+|++.......+..++..+.+.+|||+|+       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            456899999999999999999976643 33332        256665554444455677789999999999       77


Q ss_pred             cccchh-------hhhcCCCEE-----------EEEEeCCC
Q psy13826        148 FRAVTR-------SYYRGAAGA-----------LMVIDVSH  170 (173)
Q Consensus       148 ~~~~~~-------~~~~~~~~~-----------ilv~d~t~  170 (173)
                      +..++.       .|++.++++           +++|++++
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~  155 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP  155 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence            777776       677655443           47777765

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.33  E-value=3.2e-12  Score=103.24  Aligned_cols=86  Identities=19%  Similarity=0.213  Sum_probs=61.1

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCC-------CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhh
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY  155 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~  155 (173)
                      ....++|+++|..++|||||++++.+..       +..+..+.+..+.....+.+++  ..+.+|||||+++|......+
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence            3457999999999999999999999876       2222222222222222233444  578999999999998888889


Q ss_pred             hcCCCEEEEEEeCCC
Q psy13826        156 YRGAAGALMVIDVSH  170 (173)
Q Consensus       156 ~~~~~~~ilv~d~t~  170 (173)
                      ++.+|++|+|+|+++
T Consensus        94 ~~~aD~~ilVvda~~  108 (482)
T 1wb1_A           94 ADIIDLALIVVDAKE  108 (482)
T ss_dssp             TTSCCEEEEEEETTT
T ss_pred             HhhCCEEEEEEecCC
Confidence            999999999999987

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=102.66  Aligned_cols=88  Identities=18%  Similarity=0.118  Sum_probs=50.9

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCe---------------EEEEEEEeCCCccccc
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERFR  149 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~~  149 (173)
                      ..+++.++|.+|||||||++++.+..+.....|....+.....+.+.+.               ...+++||++|..+..
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            3578999999999999999999988653333332222233334444432               2358999999987654


Q ss_pred             c-------chhhhhcCCCEEEEEEeCCCCC
Q psy13826        150 A-------VTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       150 ~-------~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      .       ....+++.+|++++|+|+++.+
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            3       3456789999999999998754

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.32  E-value=1.1e-12  Score=103.87  Aligned_cols=88  Identities=17%  Similarity=0.149  Sum_probs=65.1

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhC--------CCCCC-------CCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQ--------KFMPD-------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF  148 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~--------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~  148 (173)
                      ...++|+++|.+++|||||++++++.        .+...       ...+.|.++......++.....+.+|||||+++|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            34689999999999999999999873        22110       0012333333333444444567899999999999


Q ss_pred             ccchhhhhcCCCEEEEEEeCCCC
Q psy13826        149 RAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       149 ~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      ......+++.+|++|+|+|+++.
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g  111 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADG  111 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCC
Confidence            88888899999999999999875

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.31  E-value=1e-11  Score=98.32  Aligned_cols=88  Identities=18%  Similarity=0.187  Sum_probs=61.6

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhC---CCCCCCCC--ceeeeeEEEEEEE-------------C--C----eEEEEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQ---KFMPDCPH--TIGVEFGTRIIEV-------------H--G----EKIKLQI  139 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~---~~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~i  139 (173)
                      ...++|+++|..++|||||++++.+.   .+..+..+  |+...+....+..             +  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            35689999999999999999999854   33334444  5554443333321             1  1    1368999


Q ss_pred             EeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        140 WDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       140 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      |||||++.|.......+..+|++|+|+|+++.
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g  117 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEP  117 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSC
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCC
Confidence            99999999887666677788999999999864

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.31  E-value=1.1e-12  Score=104.04  Aligned_cols=87  Identities=17%  Similarity=0.230  Sum_probs=58.3

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc-------hh
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-------TR  153 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~-------~~  153 (173)
                      .....++|+++|+.|+|||||++++++..+. ....+....+.....+.+.+.. .+.+|||+|++.+..+       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence            4456789999999999999999999988763 2222222233334455555442 7889999999887654       34


Q ss_pred             hhhcCCCEEEEEEeCC
Q psy13826        154 SYYRGAAGALMVIDVS  169 (173)
Q Consensus       154 ~~~~~~~~~ilv~d~t  169 (173)
                      .+++.+|++|+|||++
T Consensus       109 ~~l~~aD~vllVvD~~  124 (423)
T 3qq5_A          109 RVFYRADCGILVTDSA  124 (423)
T ss_dssp             HHHTSCSEEEEECSSS
T ss_pred             HHHhcCCEEEEEEeCC
Confidence            5889999999999983

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.30  E-value=2.2e-12  Score=105.21  Aligned_cols=87  Identities=20%  Similarity=0.250  Sum_probs=60.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCC--CCC------------------CCCCceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FMP------------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG  144 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g  144 (173)
                      ...+|+++|.+|+|||||+++++...  +..                  ....+.|.++......+......+.||||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            46899999999999999999999632  100                  0011223322222223333456789999999


Q ss_pred             ccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        145 QERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +++|......+++.+|++|+|+|.++.
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g  118 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKG  118 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTC
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCcc
Confidence            999988888899999999999999874

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.29  E-value=1.3e-12  Score=104.33  Aligned_cols=86  Identities=20%  Similarity=0.262  Sum_probs=60.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhC--CCCCCC---------------------------CCceeeeeEEEEEEECCeEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDC---------------------------PHTIGVEFGTRIIEVHGEKI  135 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~--~~~~~~---------------------------~~t~~~~~~~~~~~~~~~~~  135 (173)
                      ..++|+++|..++|||||+++|+..  .+....                           ....|.+.......++....
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            4689999999999999999999875  332110                           00011222222223444456


Q ss_pred             EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .+.||||||+++|......+++.+|++|+|||+++
T Consensus        85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~  119 (435)
T 1jny_A           85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK  119 (435)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred             EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC
Confidence            79999999999999888889999999999999987

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.29  E-value=2.1e-12  Score=101.88  Aligned_cols=86  Identities=16%  Similarity=0.167  Sum_probs=62.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC-------CCCCC-------CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ-------KFMPD-------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV  151 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~-------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~  151 (173)
                      .+||+++|..++|||||++++++.       .+...       .....|.+.......+......+.||||||+++|...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            589999999999999999999874       11110       0011223332233344444567889999999999887


Q ss_pred             hhhhhcCCCEEEEEEeCCCC
Q psy13826        152 TRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       152 ~~~~~~~~~~~ilv~d~t~~  171 (173)
                      ...+++.+|++|+|+|+++.
T Consensus        83 ~~~~~~~aD~~ilVvda~~g  102 (397)
T 1d2e_A           83 MITGTAPLDGCILVVAANDG  102 (397)
T ss_dssp             HHHTSSCCSEEEEEEETTTC
T ss_pred             HHhhHhhCCEEEEEEECCCC
Confidence            88889999999999999874

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.29  E-value=8.4e-13  Score=109.31  Aligned_cols=87  Identities=17%  Similarity=0.245  Sum_probs=62.8

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCC-----------------------------CceeeeeEEEEEEECCeE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-----------------------------HTIGVEFGTRIIEVHGEK  134 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~-----------------------------~t~~~~~~~~~~~~~~~~  134 (173)
                      ...+||+++|.+++|||||+++|++........                             ...|.++......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            357899999999999999999999763221110                             001222222222233344


Q ss_pred             EEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       135 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      ..+.||||||+++|......+++.+|++|+|+|+++
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~  280 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST  280 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCC
Confidence            578999999999998888889999999999999986

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.29  E-value=4e-12  Score=104.84  Aligned_cols=88  Identities=23%  Similarity=0.342  Sum_probs=57.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCC--CC---------CC--CCCceeeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FM---------PD--CPHTIGVEFGTRIIEV-----HGEKIKLQIWDTAGQE  146 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~---------~~--~~~t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~  146 (173)
                      ...+|+++|+.++|||||+++++...  +.         +.  ...+.|.++......+     ++..+.+.+|||||++
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            35799999999999999999998632  11         00  1112344443322222     4567899999999999


Q ss_pred             ccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        147 RFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       147 ~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      +|...+..+++.+|++|+|+|+++..
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv  108 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGV  108 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCC
Confidence            99988889999999999999998753

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.28  E-value=1.6e-11  Score=97.30  Aligned_cols=89  Identities=19%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCC---CCCCCCC--ceeeeeEEEEEEE-------------C--C----eEEEEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQK---FMPDCPH--TIGVEFGTRIIEV-------------H--G----EKIKLQ  138 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~---~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~  138 (173)
                      ....++|+++|..++|||||++++.+..   +..+..+  |+...+....+..             .  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998542   3333333  5544443333221             0  1    136899


Q ss_pred             EEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        139 IWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       139 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +|||||++.|.......+..+|++|+|+|+++.
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g  119 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEP  119 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCC
Confidence            999999999877666677789999999999864

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.28  E-value=1.1e-11  Score=96.79  Aligned_cols=84  Identities=19%  Similarity=0.183  Sum_probs=54.8

Q ss_pred             eeE-EEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhh
Q psy13826         86 IFK-YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE---------RFRAVTRSY  155 (173)
Q Consensus        86 ~~k-i~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~---------~~~~~~~~~  155 (173)
                      .++ |+++|.+|||||||++++++..+.....+....+.....+.+++.  .+.+|||+|.-         .|...++ .
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-E  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-H
Confidence            455 999999999999999999988753322222222334456667774  57899999962         2222222 4


Q ss_pred             hcCCCEEEEEEeCCCCC
Q psy13826        156 YRGAAGALMVIDVSHVK  172 (173)
Q Consensus       156 ~~~~~~~ilv~d~t~~~  172 (173)
                      ++.+|++++|+|++++.
T Consensus       255 ~~~aD~il~VvD~s~~~  271 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSE  271 (364)
T ss_dssp             GGGSSEEEEEEETTSCH
T ss_pred             HHhCCEEEEEEECCCCc
Confidence            78899999999998763

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.27  E-value=1e-11  Score=106.21  Aligned_cols=89  Identities=21%  Similarity=0.288  Sum_probs=64.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCC------------CCC----CCC--CceeeeeEEEEEE------------ECCe
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQK------------FMP----DCP--HTIGVEFGTRIIE------------VHGE  133 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~------------~~~----~~~--~t~~~~~~~~~~~------------~~~~  133 (173)
                      ....||+++|+.++|||||+++++...            +.+    +..  .|+........+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            456899999999999999999998641            111    011  1332222222222            2345


Q ss_pred             EEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        134 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       134 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      .+.+.||||+|+.+|...+..+++.+|++|+|||+++..
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~  135 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV  135 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC
Confidence            789999999999999999999999999999999998753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.27  E-value=1.5e-11  Score=93.84  Aligned_cols=29  Identities=21%  Similarity=0.401  Sum_probs=26.0

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCC
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF  111 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~  111 (173)
                      .....+|+++|++|||||||++++++..+
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            44567999999999999999999999876

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.27  E-value=1.3e-11  Score=97.40  Aligned_cols=85  Identities=22%  Similarity=0.289  Sum_probs=48.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCC-CCCC-----CceeeeeEEEE---------------EEECC-eEEEEEEEeCCC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCP-----HTIGVEFGTRI---------------IEVHG-EKIKLQIWDTAG  144 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~-----~t~~~~~~~~~---------------~~~~~-~~~~l~i~D~~g  144 (173)
                      +||+++|.+|||||||++++++.... ..++     ++.+..+....               ..+++ +.+.+++|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987632 1221     22332111000               01222 257899999999


Q ss_pred             ccc----cccchh---hhhcCCCEEEEEEeCCCC
Q psy13826        145 QER----FRAVTR---SYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       145 ~~~----~~~~~~---~~~~~~~~~ilv~d~t~~  171 (173)
                      ...    ...+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            854    223333   346899999999999874

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.26  E-value=9.4e-13  Score=107.30  Aligned_cols=87  Identities=22%  Similarity=0.255  Sum_probs=61.3

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC-----------------CCCCC---CceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF-----------------MPDCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAG  144 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~-----------------~~~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g  144 (173)
                      ...+|+++|.+|+|||||+++++...-                 ..++.   ...|.++......+....+.+.||||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            467999999999999999999972110                 00000   0012222222222333456789999999


Q ss_pred             ccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        145 QERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +++|......+++.+|++|+|+|.++.
T Consensus        92 ~~df~~~~~~~l~~aD~allVvDa~~g  118 (528)
T 3tr5_A           92 HADFTEDTYRTLTAVDSALMVIDAAKG  118 (528)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTC
T ss_pred             chhHHHHHHHHHHhCCEEEEEEeCCCC
Confidence            999999899999999999999999875

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.26  E-value=5.5e-13  Score=107.74  Aligned_cols=84  Identities=18%  Similarity=0.231  Sum_probs=63.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ...+|+++|+.++|||||++++.+..+.....+.+..+.....+..++  ..+.+|||||++.|..++..+++.+|++|+
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            457899999999999999999997655433332222222121222333  357899999999999998889999999999


Q ss_pred             EEeCCC
Q psy13826        165 VIDVSH  170 (173)
Q Consensus       165 v~d~t~  170 (173)
                      |||+++
T Consensus        81 VVda~~   86 (501)
T 1zo1_I           81 VVAADD   86 (501)
T ss_dssp             EEETTT
T ss_pred             Eeeccc
Confidence            999987

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.25  E-value=9.5e-12  Score=95.96  Aligned_cols=37  Identities=22%  Similarity=0.382  Sum_probs=35.2

Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCC
Q psy13826        133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS  169 (173)
Q Consensus       133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t  169 (173)
                      +.+.+++||++||++++.+|..||++++++|+|||++
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS  195 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLA  195 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGG
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECC
Confidence            4578999999999999999999999999999999998

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.25  E-value=7.5e-12  Score=105.00  Aligned_cols=88  Identities=19%  Similarity=0.192  Sum_probs=62.0

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCC--CC------C------------CCCCceeeeeEEEEEEECCeEEEEEEE
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FM------P------------DCPHTIGVEFGTRIIEVHGEKIKLQIW  140 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~--~~------~------------~~~~t~~~~~~~~~~~~~~~~~~l~i~  140 (173)
                      .......+|+++|.+|+|||||+++++...  +.      .            ....|+...  ...+..  ..+.+.+|
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~--~~~~i~li   82 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW--KDHRINII   82 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE--TTEEEEEE
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE--CCeEEEEE
Confidence            334567899999999999999999998421  10      0            111222221  112222  34678999


Q ss_pred             eCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        141 DTAGQERFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       141 D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      ||+|+.+|...+..+++.+|++|+|+|.++..
T Consensus        83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~  114 (691)
T 1dar_A           83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV  114 (691)
T ss_dssp             CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS
T ss_pred             ECcCccchHHHHHHHHHHCCEEEEEEECCCCc
Confidence            99999999888899999999999999998754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.25  E-value=5.3e-12  Score=96.16  Aligned_cols=82  Identities=21%  Similarity=0.134  Sum_probs=56.6

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCC--CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc-c--------cccchhh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-R--------FRAVTRS  154 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~-~--------~~~~~~~  154 (173)
                      ..+|+++|++|||||||++++++..+..  ....+... .....+..  ....+.+|||+|.. .        +......
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~-~~~gi~~~--~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRH-RIVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSS-CEEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCccee-eEEEEEEE--CCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            4589999999999999999999987531  11212211 11112222  24578899999987 2        3344456


Q ss_pred             hhcCCCEEEEEEeCCC
Q psy13826        155 YYRGAAGALMVIDVSH  170 (173)
Q Consensus       155 ~~~~~~~~ilv~d~t~  170 (173)
                      +++.+|++++|+|.++
T Consensus        85 ~l~~~D~vl~Vvd~~~  100 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR  100 (301)
T ss_dssp             CCCCEEEEEEEEETTC
T ss_pred             HHhcCCEEEEEEeCCC
Confidence            7889999999999875

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.23  E-value=4.6e-12  Score=104.47  Aligned_cols=86  Identities=19%  Similarity=0.216  Sum_probs=62.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCC----CCCceeeeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD----CPHTIGVEFGTRII------------EVHGEKIKLQIWDTAGQERF  148 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~----~~~t~~~~~~~~~~------------~~~~~~~~l~i~D~~g~~~~  148 (173)
                      ..++|+++|++++|||||++++.+..+...    ..++++..+.....            .++.....+.+|||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            357999999999999999999997654332    12244432211000            00011125899999999999


Q ss_pred             ccchhhhhcCCCEEEEEEeCCC
Q psy13826        149 RAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       149 ~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      ..++..+++.+|++|+|||+++
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~  105 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINE  105 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTT
T ss_pred             HHHHHHHHhhCCEEEEEEECCC
Confidence            9999989999999999999998

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.22  E-value=4.2e-12  Score=101.94  Aligned_cols=82  Identities=17%  Similarity=0.195  Sum_probs=61.2

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhC--CCCCC-------------------------------CCCceeeeeEEEEEEEC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPD-------------------------------CPHTIGVEFGTRIIEVH  131 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~~  131 (173)
                      ..++|+++|.+++|||||+++|++.  .+...                               .-.|+...+    ..++
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~----~~~~   81 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL----WKFE   81 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC----EEEE
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE----EEEe
Confidence            4689999999999999999999864  22110                               111222222    1233


Q ss_pred             CeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        132 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       132 ~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .....+.||||||+++|......+++.+|++|+|+|+++
T Consensus        82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~  120 (458)
T 1f60_A           82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV  120 (458)
T ss_dssp             CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred             cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCc
Confidence            344679999999999998888888999999999999985

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.21  E-value=1.9e-11  Score=98.39  Aligned_cols=84  Identities=17%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHh--CCCCC-------------------------------CCCCceeeeeEEEEEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTE--QKFMP-------------------------------DCPHTIGVEFGTRIIEV  130 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~  130 (173)
                      ...++|+++|..++|||||+++|+.  +.+..                               +.-.|+...+  ..+..
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~--~~~~~  118 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR--AYFET  118 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C--CEEEC
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee--EEEec
Confidence            3568999999999999999999975  22210                               0111222111  12223


Q ss_pred             CCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        131 HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       131 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +  ...+.||||||+++|......+++.+|++|+|+|+++.
T Consensus       119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g  157 (467)
T 1r5b_A          119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG  157 (467)
T ss_dssp             S--SEEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred             C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence            3  35789999999999988888889999999999999874

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.21  E-value=5.2e-11  Score=98.17  Aligned_cols=89  Identities=24%  Similarity=0.325  Sum_probs=60.0

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCC--CCC-----CC------CCceeeeeEEE--EEEE---CCeEEEEEEEeCCCc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMP-----DC------PHTIGVEFGTR--IIEV---HGEKIKLQIWDTAGQ  145 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~-----~~------~~t~~~~~~~~--~~~~---~~~~~~l~i~D~~g~  145 (173)
                      ....+++++|..++|||||+++++...  +..     ..      ....|.++...  .+.+   ++..+.+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            346799999999999999999998631  111     00      01122222111  1112   456789999999999


Q ss_pred             cccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        146 ERFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       146 ~~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      ++|...+..+++.+|++|+|+|+++..
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv  110 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGI  110 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBC
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCc
Confidence            999988888999999999999998753

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.21  E-value=1.2e-11  Score=107.47  Aligned_cols=90  Identities=16%  Similarity=0.126  Sum_probs=63.0

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhC-------CCCC-------CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQ-------KFMP-------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER  147 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~-------~~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~  147 (173)
                      .....++|+++|+.++|||||++++++.       .+..       ....+.|.++....+.++.....+.||||||+++
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            3445799999999999999999999874       1110       1122344444333334445556789999999999


Q ss_pred             cccchhhhhcCCCEEEEEEeCCCC
Q psy13826        148 FRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       148 ~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      |......+++.+|++|+|+|+++.
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdG  395 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDG  395 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTC
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCcc
Confidence            988888889999999999999875

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.21  E-value=3.8e-11  Score=92.26  Aligned_cols=37  Identities=14%  Similarity=0.290  Sum_probs=34.6

Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCC
Q psy13826        133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS  169 (173)
Q Consensus       133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t  169 (173)
                      +.+.+++||++||++++.+|..||++++++|+|||++
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls  201 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS  201 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGG
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECc
Confidence            3478999999999999999999999999999999887

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.20  E-value=1.3e-11  Score=96.54  Aligned_cols=70  Identities=13%  Similarity=0.096  Sum_probs=54.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      +|+++|.+++|||||+++++      +...|+...+    ..+......+.+|||||+++|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~----~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM----YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEESSSEE----EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE----EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999998      1112222222    2233334468999999999998777778899999999999

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.20  E-value=4.4e-11  Score=93.12  Aligned_cols=85  Identities=25%  Similarity=0.145  Sum_probs=57.2

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCC--CceeeeeEEEEEEECCeEEEEEEEeCCCccccc---------cch
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP--HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR---------AVT  152 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~---------~~~  152 (173)
                      ...++++++|.+|||||||++++++..+.....  .|...  ....+...  ...+.+|||+|.....         ...
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  240 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGI--NVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAI  240 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCE--EEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeece--eEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHH
Confidence            356899999999999999999999876432211  12222  22222223  3568999999985432         111


Q ss_pred             hhhhcCCCEEEEEEeCCCCC
Q psy13826        153 RSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       153 ~~~~~~~~~~ilv~d~t~~~  172 (173)
                      ..+...+|++++|+|++++.
T Consensus       241 ~~~~~~ad~illV~D~s~~~  260 (357)
T 2e87_A          241 LALRYLGNLIIYIFDPSEHC  260 (357)
T ss_dssp             HGGGGTCSEEEEEECTTCTT
T ss_pred             HHHHhcCCEEEEEEeCCccc
Confidence            23456799999999998764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.19  E-value=6.3e-12  Score=97.32  Aligned_cols=81  Identities=22%  Similarity=0.197  Sum_probs=56.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCC-CCCC-CceeeeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhhhcC--
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRSYYRG--  158 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----~~~~~~~~~~~--  158 (173)
                      .+|+++|.+|||||||++++++.... ..+. .|...+  ...+.+++ ...+.+||++|+..    +..+...|++.  
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~--~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~  235 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN--LGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE  235 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC--EEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce--EEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence            46889999999999999999987532 2222 232222  22344443 13688999999643    44455666554  


Q ss_pred             -CCEEEEEEeCCC
Q psy13826        159 -AAGALMVIDVSH  170 (173)
Q Consensus       159 -~~~~ilv~d~t~  170 (173)
                       ++++|+|||+++
T Consensus       236 ~~d~ll~VvD~s~  248 (342)
T 1lnz_A          236 RTRVIVHVIDMSG  248 (342)
T ss_dssp             HCCEEEEEEESSC
T ss_pred             hccEEEEEEECCc
Confidence             999999999998

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.16  E-value=3.6e-11  Score=100.53  Aligned_cols=88  Identities=16%  Similarity=0.165  Sum_probs=64.2

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCC----------------ceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH----------------TIGVEFGTRIIEVHGEKIKLQIWDTAGQER  147 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~  147 (173)
                      ....+++++|+.|+|||||++++++.........                ..+.++......+....+.+++|||+|+++
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            3467899999999999999999995433211111                112233333333444457889999999999


Q ss_pred             cccchhhhhcCCCEEEEEEeCCCC
Q psy13826        148 FRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       148 ~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      |......+++.+|++++|+|.++.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g  110 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAG  110 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcc
Confidence            988888999999999999998764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.16  E-value=4.5e-12  Score=104.62  Aligned_cols=86  Identities=20%  Similarity=0.237  Sum_probs=46.7

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCC--C-----------------------------CCCCCCceeeeeEEEEEEEC
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQK--F-----------------------------MPDCPHTIGVEFGTRIIEVH  131 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~  131 (173)
                      ....++|+++|.+++|||||+++|+...  +                             ..+..  .|.+.......+.
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~--~GiTid~~~~~~~  251 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA--RGVTMDVASTTFE  251 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhc--CCeeEEeeEEEEE
Confidence            3457899999999999999999996421  0                             00111  1222222222333


Q ss_pred             CeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        132 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       132 ~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .....+.||||||+++|......+++.+|++|+|+|+++
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~  290 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ  290 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            345678999999999998888888999999999999985

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.15  E-value=8.5e-11  Score=91.52  Aligned_cols=87  Identities=16%  Similarity=0.316  Sum_probs=58.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCcee---eee--------------------------------------
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIG---VEF--------------------------------------  123 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~---~~~--------------------------------------  123 (173)
                      ...+|+++|++|||||||++++++..+......++.   ...                                      
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            345999999999999999999999887433222110   000                                      


Q ss_pred             -----------EEEEEEE-CCeEEEEEEEeCCCcccc-------------ccchhhhhcCCCEEEEEEeCCCC
Q psy13826        124 -----------GTRIIEV-HGEKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       124 -----------~~~~~~~-~~~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                                 ....+.+ ......+.+|||||..++             ..+...|++.+|++|+|+|.++.
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~  185 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ  185 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC
Confidence                       0000111 111235889999998776             45667899999999999987653

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.14  E-value=1.2e-10  Score=97.99  Aligned_cols=88  Identities=18%  Similarity=0.110  Sum_probs=62.4

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCC--CCC-----------CCCC---ceeeeeEEE--EEEE-----CCeEEEEEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMP-----------DCPH---TIGVEFGTR--IIEV-----HGEKIKLQIW  140 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~-----------~~~~---t~~~~~~~~--~~~~-----~~~~~~l~i~  140 (173)
                      ....+|+++|..++|||||+++++...  +..           ++.+   ..+.+....  .+..     ++..+.+.||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            456899999999999999999997531  111           0000   112222111  1222     2234889999


Q ss_pred             eCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        141 DTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       141 D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      ||+|+.+|...+..+++.+|++|+|+|.++.
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~g  118 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGG  118 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCC
Confidence            9999999988888999999999999999874

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.13  E-value=3.4e-11  Score=101.05  Aligned_cols=87  Identities=17%  Similarity=0.200  Sum_probs=60.5

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHh--CCCCC-----------CCCC---ceeeeeE--EEEEEECCeEEEEEEEeCCC
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTE--QKFMP-----------DCPH---TIGVEFG--TRIIEVHGEKIKLQIWDTAG  144 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~--~~~~~-----------~~~~---t~~~~~~--~~~~~~~~~~~~l~i~D~~g  144 (173)
                      .....+|+++|.+|+|||||+++++.  +.+..           ++.+   ..+.+..  ...+..+  ...+.+|||+|
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence            34578999999999999999999995  22211           0000   0111111  1122233  46789999999


Q ss_pred             ccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        145 QERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +.+|......+++.+|++|+|+|.++.
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g  111 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSG  111 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTB
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCC
Confidence            999988888899999999999999874

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.12  E-value=5.3e-11  Score=92.50  Aligned_cols=34  Identities=26%  Similarity=0.488  Sum_probs=28.1

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM  112 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~  112 (173)
                      +........+|+++|++|||||||++++++..+.
T Consensus        24 g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           24 GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             TCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred             CCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence            3333445689999999999999999999998874

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.12  E-value=8.7e-11  Score=96.21  Aligned_cols=87  Identities=17%  Similarity=0.189  Sum_probs=59.8

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCC---CCCCCceeeeeEEEEEEECC--------------------------
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM---PDCPHTIGVEFGTRIIEVHG--------------------------  132 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~--------------------------  132 (173)
                      ......+|+++|.+|||||||+|++++..+.   ....|+..  ... .+..+.                          
T Consensus        61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~  137 (550)
T 2qpt_A           61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGN  137 (550)
T ss_dssp             TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SEE-EEECCSSSEEECCC------------------
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eEE-EEEECCcccccCCceeeecCcccHHHHhhhcc
Confidence            3456789999999999999999999998863   22222221  100 000000                          


Q ss_pred             ----e-E---------EEEEEEeCCCccc-----------cccchhhhhcCCCEEEEEEeCCCC
Q psy13826        133 ----E-K---------IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       133 ----~-~---------~~l~i~D~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                          + .         ..+.+|||+|...           |......++..+|++|+|+|.++.
T Consensus       138 ~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~  201 (550)
T 2qpt_A          138 TFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL  201 (550)
T ss_dssp             CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC
T ss_pred             cccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC
Confidence                0 0         2588999999864           445666788999999999999874

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.11  E-value=9.5e-11  Score=91.49  Aligned_cols=82  Identities=22%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCC-CCCCCC-ceeeeeEEEEEEECC-------------------eEEEEEEEeCCCc
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPH-TIGVEFGTRIIEVHG-------------------EKIKLQIWDTAGQ  145 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~~-------------------~~~~l~i~D~~g~  145 (173)
                      ++++++|.+|||||||++++.+... ..+++. |+..+...  ..+.+                   ....+++||+||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV--VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE--EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee--EecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5899999999999999999997652 122221 22222211  12221                   2356899999998


Q ss_pred             cccc----cchh---hhhcCCCEEEEEEeCCC
Q psy13826        146 ERFR----AVTR---SYYRGAAGALMVIDVSH  170 (173)
Q Consensus       146 ~~~~----~~~~---~~~~~~~~~ilv~d~t~  170 (173)
                      .++.    .+..   .+++.+|++++|+|+++
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            7652    2333   35799999999999986

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.11  E-value=3.4e-11  Score=87.55  Aligned_cols=43  Identities=26%  Similarity=0.338  Sum_probs=27.4

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ++...|||++||++|||||||+.||+.+.|...+.+|++..+.
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~   51 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFL   51 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CE
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEE
Confidence            4556789999999999999999999999999999999875443

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.09  E-value=1.5e-10  Score=97.19  Aligned_cols=88  Identities=24%  Similarity=0.386  Sum_probs=58.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceee--------eeEEEE----------------------------
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGV--------EFGTRI----------------------------  127 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~--------~~~~~~----------------------------  127 (173)
                      ..++|+++|++|+|||||+|++++..+.. ...|+...        +.....                            
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            46899999999999999999999887432 22332210        000000                            


Q ss_pred             -----------------EEECCeE--EEEEEEeCCCcccc---ccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        128 -----------------IEVHGEK--IKLQIWDTAGQERF---RAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       128 -----------------~~~~~~~--~~l~i~D~~g~~~~---~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                                       +......  ..+.||||||....   ......+++.+|++|+|+|.+++.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~  214 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC  214 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc
Confidence                             0000000  25889999997553   345567889999999999998764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.00  E-value=1.3e-10  Score=88.47  Aligned_cols=71  Identities=27%  Similarity=0.500  Sum_probs=36.2

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhC-CCCCCC--------CCceeeeeEEEEEEECCeEEEEEEEeCCCc-------c
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQ-KFMPDC--------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ-------E  146 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~-------~  146 (173)
                      ....++|+++|++|||||||++++++. .++...        .++.+.......+..++....+.+||++|+       +
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            345689999999999999999998875 444432        122222221222223445678999999998       6


Q ss_pred             ccccchh
Q psy13826        147 RFRAVTR  153 (173)
Q Consensus       147 ~~~~~~~  153 (173)
                      .+..+.+
T Consensus        95 ~~~~l~~  101 (301)
T 2qnr_A           95 CFKTIIS  101 (301)
T ss_dssp             -CTTHHH
T ss_pred             HHHHHHH
Confidence            6665554

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.94  E-value=1.4e-09  Score=86.28  Aligned_cols=66  Identities=26%  Similarity=0.412  Sum_probs=37.7

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCC--------CCceeeeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC--------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF  148 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~  148 (173)
                      ....++|+++|++|||||||++.+++..+....        .++.+.......+...+....+.+||++|...+
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~  101 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA  101 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence            445688999999999999999999988763221        223332222222222344467999999998653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.93  E-value=2.8e-09  Score=83.78  Aligned_cols=86  Identities=21%  Similarity=0.222  Sum_probs=57.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC-CCCCCCceeeeeEEEEEEECCe-------------E--EEEEEEeCCCccc-
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGE-------------K--IKLQIWDTAGQER-  147 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~-------------~--~~l~i~D~~g~~~-  147 (173)
                      ...++.++|++|||||||++.+++... .....|....+.....+.+.+.             .  ..+.+||++|... 
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            357899999999999999999999765 3333332222222334445441             1  3578999999543 


Q ss_pred             ------cccchhhhhcCCCEEEEEEeCCC
Q psy13826        148 ------FRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       148 ------~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                            ........++.+|+++.|+|..+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  22223446789999999999875

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.80  E-value=6.9e-09  Score=80.60  Aligned_cols=54  Identities=15%  Similarity=0.282  Sum_probs=43.7

Q ss_pred             CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        115 CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       115 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      +.+|+|...  ..+.++  .+.+++||++||++++.+|..||++++++|+|||+++.+
T Consensus       177 ~~~T~Gi~~--~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d  230 (353)
T 1cip_A          177 RVKTTGIVE--THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD  230 (353)
T ss_dssp             CCCCCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGG
T ss_pred             cCceeceEE--EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcccc
Confidence            345666543  334444  578999999999999999999999999999999999853

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.80  E-value=1.6e-08  Score=79.71  Aligned_cols=49  Identities=18%  Similarity=0.296  Sum_probs=41.0

Q ss_pred             ceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        118 TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       118 t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      |+|.+.  ..+.+++  +.++|||++||++++.+|..||++++++|+|||+++
T Consensus       204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~  252 (402)
T 1azs_C          204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSS  252 (402)
T ss_dssp             CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTG
T ss_pred             eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcc
Confidence            455443  3344543  789999999999999999999999999999999998

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.79  E-value=8.9e-09  Score=80.48  Aligned_cols=84  Identities=21%  Similarity=0.220  Sum_probs=57.1

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc----cchh---hhh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----AVTR---SYY  156 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----~~~~---~~~  156 (173)
                      -..+|.++|.||||||||+|++.+..... +++-|. .+.....+.+.+.  .+++.||||...-.    .+..   ...
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT-~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTT-LVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSC-CCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCce-eeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            35689999999999999999999865332 233222 2233445566665  46788999963211    1112   246


Q ss_pred             cCCCEEEEEEeCCCC
Q psy13826        157 RGAAGALMVIDVSHV  171 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~  171 (173)
                      +.||++++|.|.++|
T Consensus       148 ~~ad~il~vvD~~~p  162 (376)
T 4a9a_A          148 RTCNLLFIILDVNKP  162 (376)
T ss_dssp             HHCSEEEEEEETTSH
T ss_pred             HhcCccccccccCcc
Confidence            789999999999875

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.68  E-value=1.4e-08  Score=78.83  Aligned_cols=37  Identities=16%  Similarity=0.292  Sum_probs=33.5

Q ss_pred             eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCC
Q psy13826        133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS  169 (173)
Q Consensus       133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t  169 (173)
                      +.+.++||||+||++|+.+|+.||++++++|+|||++
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis  217 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS  217 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGG
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECc
Confidence            6789999999999999999999999999999999998

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.65  E-value=1.7e-09  Score=82.28  Aligned_cols=66  Identities=14%  Similarity=0.067  Sum_probs=55.3

Q ss_pred             HHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        101 CLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       101 sl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      +|+.+|+.+.|. ..+.||+|+.+.. .+..++   .+++||+  +++|..+++.+++++|++|+|||+++++
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~-~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~   98 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEY-TPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPE   98 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEE-ECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTC
T ss_pred             cEEEEEEcccccccCCCCCCccEEEE-EEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCC
Confidence            688888888998 8899999976642 222222   6899999  9999999999999999999999999986

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.63  E-value=6.3e-08  Score=69.19  Aligned_cols=46  Identities=33%  Similarity=0.637  Sum_probs=37.3

Q ss_pred             CCCCCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826          7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus         7 ~~~~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+..++..+||+++|++|||||||+++|+.+.|...+.+|++..+
T Consensus        18 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~   63 (201)
T 2ew1_A           18 GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDF   63 (201)
T ss_dssp             ----CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEE
T ss_pred             CCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeE
Confidence            3445678899999999999999999999999999888888876443

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.63  E-value=5.3e-08  Score=77.12  Aligned_cols=79  Identities=20%  Similarity=0.256  Sum_probs=50.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCC-CCCCC-ceeeeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhh---hcC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFM-PDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRSY---YRG  158 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----~~~~~~~~---~~~  158 (173)
                      .++++|++|+|||||++++++.... ..+.. |..  .....+..++ ...+.+||++|...    +..+...+   +..
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~--p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er  235 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLS--PNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR  235 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSC--CEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceec--ceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence            5789999999999999999876421 11211 111  1122333443 24678999999742    22233333   457


Q ss_pred             CCEEEEEEeCC
Q psy13826        159 AAGALMVIDVS  169 (173)
Q Consensus       159 ~~~~ilv~d~t  169 (173)
                      ++.++.++|++
T Consensus       236 a~~lL~vvDls  246 (416)
T 1udx_A          236 TRVLLYVLDAA  246 (416)
T ss_dssp             SSEEEEEEETT
T ss_pred             HHhhhEEeCCc
Confidence            99999999997

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.60  E-value=1.1e-07  Score=74.16  Aligned_cols=65  Identities=17%  Similarity=0.294  Sum_probs=42.1

Q ss_pred             HHHHHhCCCCCC-------CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        103 LHQFTEQKFMPD-------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       103 ~~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +.|+....+.+.       ..+|+|...  ..+.++  .+.+++||++||+.++..|..|+++++++|+|||+++.
T Consensus       166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~  237 (362)
T 1zcb_A          166 LDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEF  237 (362)
T ss_dssp             HHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCT
T ss_pred             HHHHhcCCCCCChhhhhhccCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccc
Confidence            555555544432       345667554  334444  47899999999999999999999999999999999983

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.60  E-value=2.6e-08  Score=74.33  Aligned_cols=57  Identities=19%  Similarity=0.334  Sum_probs=36.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER  147 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~  147 (173)
                      ++++++|.+|||||||+|++.+..... ..++.|.+.....+.++.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            799999999999999999999876532 333444433333333332   578999999753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.58  E-value=9.7e-08  Score=66.04  Aligned_cols=48  Identities=29%  Similarity=0.336  Sum_probs=34.3

Q ss_pred             CCCCCCCCCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826          3 TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus         3 ~~~~~~~~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +|++..+.++...+||+++|++|||||||+++++.+.+...+.+|.+.
T Consensus         2 ~m~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~   49 (179)
T 2y8e_A            2 TMSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI   49 (179)
T ss_dssp             ----------CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSE
T ss_pred             ccccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee
Confidence            355555555667799999999999999999999999998888888664

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.53  E-value=1e-08  Score=74.24  Aligned_cols=40  Identities=15%  Similarity=0.188  Sum_probs=32.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG  124 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~  124 (173)
                      ..++|+++|++|||||||+++|+...+...+.++++.++.
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~   76 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI   76 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence            3589999999999999999999988776656667766543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.51  E-value=4e-08  Score=80.46  Aligned_cols=86  Identities=20%  Similarity=0.228  Sum_probs=58.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhC------------------CCCCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQ------------------KFMPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAG  144 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~------------------~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g  144 (173)
                      ..-+|+|+|..++|||||..+++..                  .+.+.  .....|+++....+.+..+...++|.||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            4568999999999999999999621                  11110  111223333333333333456788899999


Q ss_pred             ccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        145 QERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      +..|..-....++-+|++|+|+|..+
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~  135 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAK  135 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTT
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCC
Confidence            99999888888999999999999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.50  E-value=8.4e-08  Score=68.31  Aligned_cols=41  Identities=27%  Similarity=0.613  Sum_probs=27.8

Q ss_pred             CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ..++..+||+++|++|||||||+++|+.+.|...+.+|++.
T Consensus        24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~   64 (201)
T 2hup_A           24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGV   64 (201)
T ss_dssp             --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcce
Confidence            35678899999999999999999999999998888888664

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.49  E-value=6.8e-08  Score=69.63  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=22.9

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      ...+++++|.+|||||||+++++...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999999763

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.49  E-value=1.8e-07  Score=65.78  Aligned_cols=41  Identities=20%  Similarity=0.298  Sum_probs=35.6

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ....+||+++|++|||||||+++|+.+.|...+.+|++..+
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~   58 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY   58 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee
Confidence            45678999999999999999999999999999999987554

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.48  E-value=2e-07  Score=65.45  Aligned_cols=40  Identities=23%  Similarity=0.311  Sum_probs=35.2

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      ....+||+++|++|||||||+++|+.+.|...+.+|.+..
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~   56 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF   56 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEE
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceE
Confidence            4567899999999999999999999999998888886543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.47  E-value=2e-07  Score=63.93  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=35.4

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ++..+||+++|++|||||||++++..+.+...+.+|.+..+
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~   43 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASF   43 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEE
Confidence            45789999999999999999999999999888888876544

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.47  E-value=3e-07  Score=63.52  Aligned_cols=41  Identities=37%  Similarity=0.510  Sum_probs=32.5

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ....+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~   44 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF   44 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeE
Confidence            45778999999999999999999999999888888876543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.46  E-value=2.7e-07  Score=66.01  Aligned_cols=41  Identities=24%  Similarity=0.272  Sum_probs=35.4

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ....+||+++|++|||||||+++|+.+.|...+.+|++..+
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~   65 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY   65 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE
Confidence            45678999999999999999999999999988888876554

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.46  E-value=1.7e-07  Score=66.05  Aligned_cols=44  Identities=14%  Similarity=0.115  Sum_probs=33.4

Q ss_pred             CCcceeeEEEEEcCCCCchhhhhHHhhhccccc-CcccccceeEE
Q psy13826         10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFL-GLQLTQDYVCL   53 (173)
Q Consensus        10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~-~~~~t~~~~~~   53 (173)
                      ......+||+++|++|||||||+++|+.+.|.. .+.+|++....
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~   56 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE   56 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE
Confidence            445678899999999999999999999999998 88899886543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.46  E-value=3.6e-07  Score=64.55  Aligned_cols=42  Identities=43%  Similarity=0.704  Sum_probs=36.7

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ++++.+|++++|++|||||||+++++...+...+.+|++..+
T Consensus        25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~   66 (191)
T 1oix_A           25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF   66 (191)
T ss_dssp             CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEE
Confidence            456789999999999999999999999999888888876544

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.46  E-value=3e-07  Score=64.32  Aligned_cols=40  Identities=25%  Similarity=0.293  Sum_probs=35.1

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||||+++|..+.|...+.+|.+..+
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~   44 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY   44 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE
Confidence            4678999999999999999999999999988888876554

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.46  E-value=2.3e-07  Score=65.28  Aligned_cols=43  Identities=33%  Similarity=0.603  Sum_probs=37.2

Q ss_pred             CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+++..+||+++|++|||||||+++++.+.+...+.+|++..+
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~   62 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEF   62 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEE
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeE
Confidence            3567889999999999999999999999999888888866443

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.46  E-value=1.8e-07  Score=64.84  Aligned_cols=38  Identities=29%  Similarity=0.445  Sum_probs=33.0

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||+++|+.+.|.. +.+|++..+
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~   43 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY   43 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE
Confidence            35899999999999999999999999987 777876554

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.45  E-value=2.3e-07  Score=64.90  Aligned_cols=43  Identities=33%  Similarity=0.587  Sum_probs=37.7

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      .++..+||+++|++|||||||++++..+.+...+.+|++..+.
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   49 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR   49 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee
Confidence            3577899999999999999999999999998888888776543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.45  E-value=1.9e-07  Score=67.14  Aligned_cols=40  Identities=25%  Similarity=0.288  Sum_probs=28.6

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||||+++|+.+.|...+.+|....+
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~   71 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY   71 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE
Confidence            4578999999999999999999999999888888875444

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.45  E-value=2e-07  Score=67.25  Aligned_cols=36  Identities=28%  Similarity=0.424  Sum_probs=26.1

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhc--ccccCccc
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQ--KYFLGLQL   46 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~--~~~~~~~~   46 (173)
                      ..+..+||++||++|||||||++||+..  .|...+.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~   70 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV   70 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc
Confidence            4556799999999999999999999954  34544443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.45  E-value=2.7e-07  Score=64.94  Aligned_cols=41  Identities=24%  Similarity=0.385  Sum_probs=36.0

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ....+||+++|++|||||||+++|+.+.|...+.+|.+..+
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~   55 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY   55 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee
Confidence            34678999999999999999999999999988888876544

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.44  E-value=2.5e-07  Score=65.40  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=34.6

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~   65 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY   65 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE
Confidence            458999999999999999999999999988888876544

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.44  E-value=3.7e-07  Score=64.29  Aligned_cols=43  Identities=26%  Similarity=0.294  Sum_probs=36.8

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      .....+||+++|++|||||||+++|+.+.|...+.+|.+..+.
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~   61 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS   61 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE
Confidence            4557799999999999999999999999999888888776554

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.43  E-value=2.7e-07  Score=64.92  Aligned_cols=42  Identities=55%  Similarity=0.816  Sum_probs=32.5

Q ss_pred             CCCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826          9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus         9 ~~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ...+...+||+++|++|||||||+++++.+.+...+.+|.+.
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~   56 (191)
T 2a5j_A           15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV   56 (191)
T ss_dssp             CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCS
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc
Confidence            345678899999999999999999999999998877777554

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.43  E-value=3.3e-07  Score=64.28  Aligned_cols=42  Identities=24%  Similarity=0.514  Sum_probs=36.5

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..++.+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus        18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   59 (189)
T 2gf9_A           18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF   59 (189)
T ss_dssp             TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEE
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEE
Confidence            467889999999999999999999999999888878866443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.43  E-value=3.1e-07  Score=62.79  Aligned_cols=39  Identities=18%  Similarity=0.351  Sum_probs=34.0

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      +..+||+++|++|||||||++++..+.+...+.+|.+..
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~   41 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVD   41 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSS
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEE
Confidence            457899999999999999999999999988888886643

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.42  E-value=3.1e-07  Score=64.71  Aligned_cols=42  Identities=26%  Similarity=0.371  Sum_probs=35.8

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .++..+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~   60 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF   60 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEE
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeE
Confidence            357789999999999999999999999999888888877544

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.42  E-value=5.4e-07  Score=62.79  Aligned_cols=40  Identities=45%  Similarity=0.860  Sum_probs=35.2

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      .+..+||+++|++|||||||+++++.+.+...+.+|.+..
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~   46 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVE   46 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE
Confidence            4678999999999999999999999999988888776643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.41  E-value=2.6e-07  Score=69.60  Aligned_cols=59  Identities=24%  Similarity=0.384  Sum_probs=36.0

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE  146 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~  146 (173)
                      ...++++++|.+|||||||+|++.+..... ..+..+.+.....+.++.   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            346899999999999999999999875322 222333333222333333   47899999963

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.41  E-value=3.5e-07  Score=65.77  Aligned_cols=41  Identities=20%  Similarity=0.197  Sum_probs=35.5

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ...+||+++|++|||||||+++|+.+.|...+.+|++..+.
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~   65 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT   65 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE
Confidence            45789999999999999999999999999999999876653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.41  E-value=1.7e-07  Score=65.34  Aligned_cols=41  Identities=39%  Similarity=0.767  Sum_probs=20.5

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +++.+||+++|++|||||||+++|+.+.|...+.+|++..+
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~   45 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF   45 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee
Confidence            46789999999999999999999999999888888876443

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.41  E-value=3.7e-07  Score=64.70  Aligned_cols=41  Identities=27%  Similarity=0.584  Sum_probs=35.9

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +++.+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   45 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF   45 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE
Confidence            56789999999999999999999999999888888876433

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.40  E-value=1.4e-07  Score=66.45  Aligned_cols=40  Identities=28%  Similarity=0.643  Sum_probs=35.9

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +++..+||+++|++|||||||+++|+.+.|...+.+|.+.
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~   58 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGI   58 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETT
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeee
Confidence            5778899999999999999999999999998888887653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.40  E-value=3.7e-07  Score=62.54  Aligned_cols=41  Identities=27%  Similarity=0.384  Sum_probs=35.5

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +...+||+++|++|||||||++++..+.+...+.+|.+..+
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~   43 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF   43 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEE
Confidence            45678999999999999999999999999888888876543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.40  E-value=3e-07  Score=65.35  Aligned_cols=40  Identities=43%  Similarity=0.767  Sum_probs=25.3

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +++..+||+++|++|||||||+++++.+.+...+.+|++.
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~   60 (200)
T 2o52_A           21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV   60 (200)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHC------------C
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccc
Confidence            4678899999999999999999999999998887777653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.40  E-value=2.3e-07  Score=67.08  Aligned_cols=40  Identities=40%  Similarity=0.707  Sum_probs=30.5

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      .++..+||+++|+++||||||+++|+.+.|...+.+|++.
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~   48 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV   48 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CC
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc
Confidence            4678899999999999999999999999998888777664

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.40  E-value=4e-07  Score=64.01  Aligned_cols=42  Identities=43%  Similarity=0.764  Sum_probs=36.4

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+..+||+++|++|||||||+++++.+.+...+.++.+..+
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~   53 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF   53 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE
Confidence            456789999999999999999999999999888888766443

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.39  E-value=5e-07  Score=63.59  Aligned_cols=41  Identities=20%  Similarity=0.344  Sum_probs=35.8

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      +..+||+++|++|||||||+++++.+.|...+.+|++..+.
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   45 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFC   45 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeE
Confidence            35689999999999999999999999999888888775443

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.39  E-value=4.8e-07  Score=62.59  Aligned_cols=41  Identities=39%  Similarity=0.583  Sum_probs=33.1

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ++..+||+++|++|||||||+++++.+.+...+.++.+..+
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~   46 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF   46 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEE
Confidence            56789999999999999999999999999888877766443

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.39  E-value=1.8e-07  Score=67.43  Aligned_cols=42  Identities=19%  Similarity=0.292  Sum_probs=36.7

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .....+||+++|++|||||||+++|+.+.|...+.+|.+...
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~   52 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV   52 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE
Confidence            456789999999999999999999999999888888877544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.39  E-value=5.1e-07  Score=64.03  Aligned_cols=38  Identities=45%  Similarity=0.732  Sum_probs=31.3

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ++.+|++++|++|||||+|+++++...|...+.+|++.
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~   40 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV   40 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSC
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccce
Confidence            46789999999999999999999999998888787653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.39  E-value=6.5e-07  Score=62.26  Aligned_cols=41  Identities=29%  Similarity=0.397  Sum_probs=36.2

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ....+||+++|++|||||||+++++.+.+...+.+|.+..+
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~   55 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY   55 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee
Confidence            44678999999999999999999999999998888877554

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.39  E-value=6.2e-07  Score=61.19  Aligned_cols=38  Identities=29%  Similarity=0.427  Sum_probs=33.9

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|++|||||||++++..+.+...+.+|.+..+
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~   40 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY   40 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE
Confidence            47999999999999999999999999888888876544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.38  E-value=6.2e-07  Score=61.89  Aligned_cols=41  Identities=68%  Similarity=1.104  Sum_probs=35.8

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      ..+..+||+++|++|||||||++++..+.+...+.+|.+..
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~   51 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE   51 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCC
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE
Confidence            45678999999999999999999999999988887776643

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.37  E-value=3.8e-07  Score=64.87  Aligned_cols=41  Identities=41%  Similarity=0.764  Sum_probs=35.8

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ++..+||+++|++|||||||++++..+.|...+.+|++..+
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   45 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF   45 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee
Confidence            56789999999999999999999999999888888866433

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.37  E-value=8.2e-07  Score=61.38  Aligned_cols=41  Identities=29%  Similarity=0.374  Sum_probs=35.7

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ...+||+++|++|||||||++++..+.|...+.+|.+..+.
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~   47 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT   47 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE
Confidence            34689999999999999999999999999888888776543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.37  E-value=8.1e-07  Score=61.69  Aligned_cols=39  Identities=31%  Similarity=0.301  Sum_probs=35.3

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||+|+++|+.+.|...+.+|.+..+
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   43 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF   43 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE
Confidence            568999999999999999999999999999988877655

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.36  E-value=3.3e-07  Score=62.74  Aligned_cols=38  Identities=45%  Similarity=0.679  Sum_probs=28.0

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      ..+||+++|++|||||||++++..+.+...+.+|.+..
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~   39 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID   39 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CC
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcccee
Confidence            46899999999999999999999999988877776643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.36  E-value=4.6e-07  Score=61.98  Aligned_cols=40  Identities=25%  Similarity=0.380  Sum_probs=34.6

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||||+++++.+.+...+.++.+..+
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~   43 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF   43 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE
Confidence            4678999999999999999999999999888877766443

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.36  E-value=6.5e-07  Score=62.85  Aligned_cols=41  Identities=10%  Similarity=0.122  Sum_probs=36.3

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ...+||+++|++|||||||+++++.+.|...+.+|++..+.
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   60 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR   60 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE
Confidence            35789999999999999999999999999888888876654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.36  E-value=2.9e-07  Score=64.47  Aligned_cols=39  Identities=26%  Similarity=0.303  Sum_probs=25.3

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhc--ccccCcccccceeEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQ--KYFLGLQLTQDYVCL   53 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~--~~~~~~~~t~~~~~~   53 (173)
                      .+||+++|++|||||||+++|+..  .|...+.+|++..+.
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~   42 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVK   42 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeE
Confidence            369999999999999999999984  677777788775543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.36  E-value=5.7e-07  Score=63.35  Aligned_cols=39  Identities=23%  Similarity=0.334  Sum_probs=34.4

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   45 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY   45 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce
Confidence            458999999999999999999999999888888876554

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.36  E-value=3.2e-07  Score=63.44  Aligned_cols=38  Identities=21%  Similarity=0.314  Sum_probs=33.5

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ...+||+++|++|||||||+++++.+.|...+.+|++.
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~   41 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGL   41 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTS
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeE
Confidence            35689999999999999999999999998888888763

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.35  E-value=7.3e-07  Score=63.65  Aligned_cols=39  Identities=28%  Similarity=0.370  Sum_probs=34.9

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||+|+.+|+.+.|...+.+|++..+
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~   46 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF   46 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE
Confidence            468999999999999999999999999988888876544

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.35  E-value=5.4e-07  Score=64.61  Aligned_cols=42  Identities=31%  Similarity=0.578  Sum_probs=36.6

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+++.+||+++|+++||||||+++|+.+.|...+.+|++..+
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~   62 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDF   62 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEE
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEE
Confidence            467889999999999999999999999999888888866443

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.35  E-value=7.2e-07  Score=61.09  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|++|||||||+++++.+.+...+.+|.+..+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~   40 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY   40 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE
Confidence            57999999999999999999999999888888876554

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.33  E-value=6.5e-07  Score=62.79  Aligned_cols=42  Identities=36%  Similarity=0.453  Sum_probs=35.9

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .....+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~   52 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF   52 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEE
Confidence            345678999999999999999999999999888888866443

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.33  E-value=1e-06  Score=59.98  Aligned_cols=38  Identities=29%  Similarity=0.439  Sum_probs=33.2

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|++|||||||++++..+.+...+.+|.+...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~   40 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY   40 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE
Confidence            37999999999999999999999999888888866443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.32  E-value=6.8e-07  Score=63.41  Aligned_cols=40  Identities=33%  Similarity=0.524  Sum_probs=34.6

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||||++++..+.+...+.+|++...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   45 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF   45 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE
Confidence            4678999999999999999999999999888888876443

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.31  E-value=5.1e-06  Score=70.22  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=29.1

Q ss_pred             cCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCC
Q psy13826         77 SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKF  111 (173)
Q Consensus        77 ~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~  111 (173)
                      ..+........+|+++|++++|||||++++++..+
T Consensus        42 ~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~   76 (772)
T 3zvr_A           42 AIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDF   76 (772)
T ss_dssp             TTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred             hcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence            33444555678999999999999999999999876

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.31  E-value=1.2e-06  Score=59.91  Aligned_cols=37  Identities=22%  Similarity=0.403  Sum_probs=32.9

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      .+||+++|++|||||||++++..+.+...+.+|.+..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~   39 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA   39 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee
Confidence            5799999999999999999999999988887886643

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.31  E-value=1.1e-06  Score=62.13  Aligned_cols=41  Identities=29%  Similarity=0.366  Sum_probs=35.6

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ....+||+++|++|||||+|++++..+.|...+.+|.+..+
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   51 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY   51 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE
Confidence            34578999999999999999999999999888888876554

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.31  E-value=7.1e-07  Score=63.14  Aligned_cols=41  Identities=24%  Similarity=0.222  Sum_probs=27.1

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ....+||+++|++|||||||+++|+.+.|...+.+|.+..+
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~   57 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF   57 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee
Confidence            45678999999999999999999999999988888876544

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.31  E-value=9.9e-07  Score=61.30  Aligned_cols=39  Identities=28%  Similarity=0.358  Sum_probs=34.2

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||+++|+.+.|...+.+|.+..+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~   42 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY   42 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee
Confidence            457999999999999999999999999888888876544

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.29  E-value=6.4e-07  Score=62.80  Aligned_cols=39  Identities=38%  Similarity=0.556  Sum_probs=33.3

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ....+||+++|++|||||||+++|+.+.|...+.+|++.
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~   55 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV   55 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce
Confidence            345689999999999999999999999998888777664

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.29  E-value=1.4e-06  Score=59.28  Aligned_cols=38  Identities=32%  Similarity=0.449  Sum_probs=33.5

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|++|||||||++++..+.+...+.+|.+..+
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~   41 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY   41 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE
Confidence            47999999999999999999999999888888866544

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.29  E-value=4.2e-07  Score=63.77  Aligned_cols=35  Identities=23%  Similarity=0.143  Sum_probs=29.3

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCccc
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQL   46 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~   46 (173)
                      .....+||+++|++|||||||+ +++.+.|...+.+
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~   44 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKG   44 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBC
T ss_pred             ccccccEEEEECCCCCCHHHHH-HHHHhhccccccc
Confidence            4567899999999999999999 7888888776543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.28  E-value=6.5e-07  Score=63.11  Aligned_cols=40  Identities=30%  Similarity=0.512  Sum_probs=28.1

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      .+..+||+++|++|||||||+++++.+.|...+.+|.+..
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~   62 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVD   62 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCcccee
Confidence            4678999999999999999999999999988877776643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.28  E-value=1.6e-06  Score=60.38  Aligned_cols=39  Identities=26%  Similarity=0.381  Sum_probs=34.0

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||++++..+.+...+.+|.....
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   41 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY   41 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE
Confidence            468999999999999999999999999888888865443

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.27  E-value=1.1e-06  Score=62.22  Aligned_cols=40  Identities=33%  Similarity=0.409  Sum_probs=35.2

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   61 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY   61 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE
Confidence            4578999999999999999999999999988888877554

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.27  E-value=4e-07  Score=63.18  Aligned_cols=37  Identities=30%  Similarity=0.430  Sum_probs=26.2

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ..+||+++|++|||||||+++|+.+.|...+.+|.+.
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~   43 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD   43 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC---------
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeee
Confidence            3579999999999999999999999998888888653

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.27  E-value=1e-06  Score=62.26  Aligned_cols=33  Identities=27%  Similarity=0.483  Sum_probs=24.4

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhc--ccccCccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQ--KYFLGLQL   46 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~--~~~~~~~~   46 (173)
                      ..+||++||++|||||||++||+..  .|...+.+
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~   39 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV   39 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccc
Confidence            4689999999999999999999953  34544443

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.27  E-value=1.9e-06  Score=59.56  Aligned_cols=42  Identities=33%  Similarity=0.604  Sum_probs=34.5

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccc-cCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYF-LGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~-~~~~~t~~~~~   52 (173)
                      .++..+||+++|++|||||+|+++++.+.+. ..+.+|.+..+
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~   48 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDF   48 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEE
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEE
Confidence            3567899999999999999999999999985 45667766544

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.26  E-value=8.9e-07  Score=62.13  Aligned_cols=42  Identities=12%  Similarity=0.100  Sum_probs=34.2

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcc-cccCcccccceeEE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK-YFLGLQLTQDYVCL   53 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~-~~~~~~~t~~~~~~   53 (173)
                      ....+||+++|++|||||||+++++.+. +...+.+|++....
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~   60 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE   60 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE
Confidence            4467899999999999999999999988 67778888875543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.25  E-value=1.5e-06  Score=61.72  Aligned_cols=40  Identities=28%  Similarity=0.319  Sum_probs=35.0

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||||++++..+.|...+.+|.+..+
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   62 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY   62 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceE
Confidence            4678999999999999999999999999888888866544

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.25  E-value=1.2e-06  Score=60.63  Aligned_cols=38  Identities=39%  Similarity=0.654  Sum_probs=30.9

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ...+||+++|++|||||||+++++.+.+...+.+|.+.
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~   43 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA   43 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccce
Confidence            45789999999999999999999999998888888654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.25  E-value=8e-07  Score=63.55  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=30.5

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD   49 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~   49 (173)
                      ..+||+++|++|||||||+++|+.+.|...+.++..
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~   41 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITD   41 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcce
Confidence            457999999999999999999999999888876543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.25  E-value=8e-07  Score=60.58  Aligned_cols=36  Identities=14%  Similarity=0.231  Sum_probs=30.6

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||+++|++|||||||+++++.+.|.. +.||++...
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~   36 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV   36 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE
Confidence            589999999999999999999999875 567877443

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.24  E-value=5.4e-07  Score=63.82  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=26.2

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ....+||+++|++|||||||+++++.+.|...+.+|.+.
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~   63 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV   63 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC---------
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccc
Confidence            456789999999999999999999999998877777663

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.24  E-value=1e-06  Score=61.08  Aligned_cols=39  Identities=28%  Similarity=0.408  Sum_probs=33.7

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ....+||+++|++|||||||+++++.+.+...+.+|++.
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~   47 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA   47 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCC
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCcee
Confidence            456789999999999999999999999998877777654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.24  E-value=1.4e-06  Score=67.67  Aligned_cols=24  Identities=29%  Similarity=0.303  Sum_probs=21.5

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ....|+++|.+|||||||+++++.
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999974

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.24  E-value=1.5e-06  Score=61.87  Aligned_cols=40  Identities=28%  Similarity=0.352  Sum_probs=33.1

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||||+++|+.+.+...+.+|.+..+
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~   67 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY   67 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee
Confidence            4568999999999999999999999999988888876544

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.23  E-value=2.1e-06  Score=59.57  Aligned_cols=40  Identities=30%  Similarity=0.391  Sum_probs=34.4

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||+|++++..+.|...+.+|.+..+
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   55 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY   55 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE
Confidence            3568999999999999999999999999888888866544

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.23  E-value=1.2e-07  Score=78.90  Aligned_cols=84  Identities=21%  Similarity=0.283  Sum_probs=60.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC--CCCC-----------CCCC---ceeeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ--KFMP-----------DCPH---TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA  150 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~--~~~~-----------~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~  150 (173)
                      .+|+++|..++|||||..+++..  ....           ++.+   ..|+++....+.+..+...++|.||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            47899999999999999999721  1110           0110   113444443444444556788999999999998


Q ss_pred             chhhhhcCCCEEEEEEeCCC
Q psy13826        151 VTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       151 ~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .....++-+|++|+|+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~  102 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKD  102 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSC
T ss_pred             HHHHHHHHhCEEEEEEeCCC
Confidence            88888999999999999864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.23  E-value=2.3e-06  Score=57.98  Aligned_cols=38  Identities=26%  Similarity=0.390  Sum_probs=32.8

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|++|||||||++++..+.+...+.+|.+...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~   40 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY   40 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE
Confidence            36999999999999999999999999888877765443

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.22  E-value=1e-06  Score=63.17  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=35.2

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ....+||+++|++|||||||+++++.+.+...+.+|.+....
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   49 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNH   49 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeE
Confidence            456789999999999999999999999998888888775443

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.22  E-value=7e-07  Score=62.25  Aligned_cols=40  Identities=28%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ....+||+++|++|||||||+++|+.+.| ..+.+|.+...
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~   57 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV   57 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee
Confidence            45678999999999999999999999998 55667766543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.21  E-value=3.7e-07  Score=64.72  Aligned_cols=40  Identities=45%  Similarity=0.833  Sum_probs=34.6

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      ..+..+||+++|++|||||||+++++.+.+...+.++.+.
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~   68 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV   68 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCC
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccc
Confidence            3567899999999999999999999999998877777553

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.20  E-value=1.9e-06  Score=61.40  Aligned_cols=41  Identities=46%  Similarity=0.715  Sum_probs=33.0

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      ..+..+||+++|++|||||+|+++++.+.|...+.+|++..
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~   56 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID   56 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCC
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce
Confidence            34567899999999999999999999999988887776643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.20  E-value=6.8e-07  Score=63.34  Aligned_cols=30  Identities=37%  Similarity=0.481  Sum_probs=24.5

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      .+..+||+++|++|||||||+++|+...+.
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~   49 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGD   49 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECC
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCC
Confidence            456789999999999999999999765443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.19  E-value=2.1e-06  Score=61.12  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=28.7

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||+++++.+.+...+.+|.+..+
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   62 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY   62 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEE
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceE
Confidence            568999999999999999999999999888888866544

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.19  E-value=1.9e-06  Score=60.10  Aligned_cols=40  Identities=15%  Similarity=0.282  Sum_probs=33.5

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ...+||+++|++|||||||+++++.+. ...+.+|++....
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~   55 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK   55 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE
Confidence            356899999999999999999999988 7778888875543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.19  E-value=1.1e-06  Score=61.51  Aligned_cols=38  Identities=26%  Similarity=0.231  Sum_probs=32.4

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||+++++.+.+. .+.+|++...
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~   52 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV   52 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce
Confidence            3579999999999999999999999888 6777876443

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.18  E-value=3.4e-06  Score=59.01  Aligned_cols=39  Identities=26%  Similarity=0.376  Sum_probs=33.8

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||++++..+.+...+.+|.+..+
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   58 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY   58 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE
Confidence            568999999999999999999999999888777765444

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.18  E-value=2.1e-06  Score=59.05  Aligned_cols=32  Identities=25%  Similarity=0.445  Sum_probs=24.4

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQ   45 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~   45 (173)
                      ..+||+++|++|||||||+++|+.+.+...+.
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~   34 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE   34 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccC
Confidence            46899999999999999999999998865543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.17  E-value=1.3e-06  Score=60.91  Aligned_cols=39  Identities=21%  Similarity=0.313  Sum_probs=31.8

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||||+++++.+.+. .+.+|.+...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~~   52 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNI   52 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeEE
Confidence            45689999999999999999999988664 4667777543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.16  E-value=1.3e-06  Score=67.71  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=22.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ....|+++|.+|||||||++++++
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999999986

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.16  E-value=9.7e-07  Score=61.31  Aligned_cols=39  Identities=18%  Similarity=0.288  Sum_probs=32.8

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||||+++++.+.+ ..+.+|++...
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~   54 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV   54 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce
Confidence            3568999999999999999999999988 56677777543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.16  E-value=2.6e-06  Score=58.32  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=31.4

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|++|||||||+++++.+.+.. +.+|++...
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~   43 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV   43 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccce
Confidence            4799999999999999999999998864 567776544

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.14  E-value=1.8e-06  Score=60.91  Aligned_cols=38  Identities=13%  Similarity=0.184  Sum_probs=32.3

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||+++++.+.|.. +.+|++...
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~   65 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV   65 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCceeE
Confidence            46899999999999999999999999874 567877543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.13  E-value=7.9e-06  Score=68.88  Aligned_cols=88  Identities=14%  Similarity=0.126  Sum_probs=58.5

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhC--------C------CCCC--CCCceeeeeEEEEEEE--C-----CeEEEEEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQ--------K------FMPD--CPHTIGVEFGTRIIEV--H-----GEKIKLQI  139 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~--------~------~~~~--~~~t~~~~~~~~~~~~--~-----~~~~~l~i  139 (173)
                      -+..-+|+++|..++|||||..+++..        +      +.+.  .....|+++....+.+  .     ...+.+++
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl   89 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV   89 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence            356679999999999999999998721        1      1110  0112233333323322  1     13578999


Q ss_pred             EeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        140 WDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       140 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .||||+.+|..-....++-+|++|+|+|...
T Consensus        90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDave  120 (709)
T 4fn5_A           90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTS  120 (709)
T ss_dssp             ECCCSCTTCHHHHHHHHHHCSEEEEEEETTT
T ss_pred             EeCCCCcccHHHHHHHHHHhCeEEEEEECCC
Confidence            9999999999888888999999999999863

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.12  E-value=1.9e-06  Score=60.12  Aligned_cols=34  Identities=29%  Similarity=0.301  Sum_probs=29.6

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD   49 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~   49 (173)
                      +||+++|++|||||||+++++.+.|...+.++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t   35 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT   35 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc
Confidence            5999999999999999999999998877666543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.12  E-value=1.8e-06  Score=59.10  Aligned_cols=33  Identities=30%  Similarity=0.496  Sum_probs=22.6

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT   47 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t   47 (173)
                      .+||+++|++|||||||+++|+...+...+.++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~   34 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEME   34 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC---------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCC
Confidence            479999999999999999999987776554444

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.11  E-value=3.6e-06  Score=59.23  Aligned_cols=38  Identities=26%  Similarity=0.256  Sum_probs=30.7

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||+++++.+.+. .+.+|.+...
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~   59 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS   59 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCe
Confidence            3569999999999999999999999886 4667766543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.11  E-value=2.2e-06  Score=63.35  Aligned_cols=38  Identities=24%  Similarity=0.536  Sum_probs=31.6

Q ss_pred             CcceeeEEEEEcCC---------CCchhhhhHHhhh---cccccCccccc
Q psy13826         11 SYSYIFKYIIIGDM---------GVGKSCLLHQFTE---QKYFLGLQLTQ   48 (173)
Q Consensus        11 ~~~~~~k~~~~g~~---------~vgkt~l~~~~~~---~~~~~~~~~t~   48 (173)
                      .....+||+++|++         |||||||++||+.   +.|...+.+|.
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~   64 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVL   64 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEE
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcc
Confidence            45677999999999         9999999999999   66766666553

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.08  E-value=2e-06  Score=60.13  Aligned_cols=39  Identities=13%  Similarity=0.106  Sum_probs=32.5

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||||+++++.+.+.. +.+|++...
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~   58 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL   58 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE
Confidence            356899999999999999999999998875 566776543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.06  E-value=3.6e-06  Score=58.07  Aligned_cols=34  Identities=21%  Similarity=0.096  Sum_probs=29.5

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT   47 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t   47 (173)
                      ..+||+++|++|||||||+++++.+.+...+.++
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~   40 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGG   40 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCc
Confidence            3569999999999999999999999988766554

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.06  E-value=6.2e-06  Score=64.32  Aligned_cols=102  Identities=17%  Similarity=0.152  Sum_probs=56.7

Q ss_pred             EeeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCC-----CCCCceeeeeEEEEEE
Q psy13826         55 LVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-----DCPHTIGVEFGTRIIE  129 (173)
Q Consensus        55 ~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~-----~~~~t~~~~~~~~~~~  129 (173)
                      .+++..+.+...++..+....         ...+++++|.+|||||||+|++++.....     ...+..+.+.....+.
T Consensus       138 ~iSA~~g~gi~~L~~~l~~~~---------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~  208 (368)
T 3h2y_A          138 LISAAKGQGIAELADAIEYYR---------GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP  208 (368)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH---------TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE
T ss_pred             EEeCCCCcCHHHHHhhhhhhc---------ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE
Confidence            455555666666555443321         12479999999999999999999863111     1112223333333344


Q ss_pred             ECCeEEEEEEEeCCCcccccc----chhh----h--hcCCCEEEEEEeC
Q psy13826        130 VHGEKIKLQIWDTAGQERFRA----VTRS----Y--YRGAAGALMVIDV  168 (173)
Q Consensus       130 ~~~~~~~l~i~D~~g~~~~~~----~~~~----~--~~~~~~~ilv~d~  168 (173)
                      ++..   +.++||||-.....    +...    +  .+..+.++++.|.
T Consensus       209 ~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~  254 (368)
T 3h2y_A          209 LDEE---SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNE  254 (368)
T ss_dssp             SSSS---CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECT
T ss_pred             ecCC---eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcC
Confidence            4433   67999999643221    1111    1  2556777777665

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.05  E-value=3.1e-06  Score=58.08  Aligned_cols=31  Identities=26%  Similarity=0.546  Sum_probs=25.0

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQL   46 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~   46 (173)
                      +||+++|++|||||||+++++.+.+.....+
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~   34 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENVYIGNWP   34 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSSSCC---
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCeeccCCC
Confidence            6999999999999999999998876544333

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.04  E-value=3.1e-06  Score=60.02  Aligned_cols=37  Identities=22%  Similarity=0.189  Sum_probs=26.7

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      ..+||+++|++|||||||+++++.+++. .+.+|++..
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~   60 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT   60 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce
Confidence            3579999999999999999999998875 456676543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.03  E-value=6.6e-06  Score=64.18  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             EeeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhC-----CCCCCCCCceeeeeEEEEEE
Q psy13826         55 LVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQ-----KFMPDCPHTIGVEFGTRIIE  129 (173)
Q Consensus        55 ~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~-----~~~~~~~~t~~~~~~~~~~~  129 (173)
                      .+++..+.....+...+....         ...+++++|.+|||||||+|.+++.     .... ..+..+.+.....+.
T Consensus       140 ~iSA~~g~gi~~L~~~I~~~~---------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~-~~~~~gtT~~~~~~~  209 (369)
T 3ec1_A          140 LVSAAKGIGMAKVMEAINRYR---------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVIT-TSYFPGTTLDMIEIP  209 (369)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHH---------TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCE-EEECTTSSCEEEEEE
T ss_pred             EEECCCCCCHHHHHHHHHhhc---------ccCcEEEEcCCCCchHHHHHHHHhhccCCcccee-ecCCCCeEEeeEEEE
Confidence            455555555555555443322         1247999999999999999999975     1110 011112222233344


Q ss_pred             ECCeEEEEEEEeCCCcccccc--------chhhhh--cCCCEEEEEEeC
Q psy13826        130 VHGEKIKLQIWDTAGQERFRA--------VTRSYY--RGAAGALMVIDV  168 (173)
Q Consensus       130 ~~~~~~~l~i~D~~g~~~~~~--------~~~~~~--~~~~~~ilv~d~  168 (173)
                      ++..   +.++||||-.....        ....++  +..+.++++.|.
T Consensus       210 ~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~  255 (369)
T 3ec1_A          210 LESG---ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNE  255 (369)
T ss_dssp             CSTT---CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECT
T ss_pred             eCCC---eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcC
Confidence            4433   67899999643221        112222  667888888776

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.03  E-value=1.5e-06  Score=61.01  Aligned_cols=36  Identities=17%  Similarity=0.244  Sum_probs=24.0

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCccccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQ   48 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~   48 (173)
                      ...+||+++|++|||||||+++++.+.|...+.++.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~   56 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKP   56 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC----------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCC
Confidence            346799999999999999999999988766555543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.03  E-value=1.1e-06  Score=62.26  Aligned_cols=37  Identities=30%  Similarity=0.538  Sum_probs=7.7

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhc--ccccCcccccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KYFLGLQLTQD   49 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~--~~~~~~~~t~~   49 (173)
                      ...+||+++|++|||||||+++++.+  .|...+.+|.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~   56 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSG   56 (208)
T ss_dssp             EEEEEEEEC------------------------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccc
Confidence            46789999999999999999999999  88888888876

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.01  E-value=1.6e-06  Score=66.90  Aligned_cols=34  Identities=12%  Similarity=-0.020  Sum_probs=24.3

Q ss_pred             EEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       135 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +.+.||||+|......   ...+.+|++++|+|.++.
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~  182 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGG  182 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC---
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCcc
Confidence            5688999999654332   246899999999998754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.00  E-value=7.4e-06  Score=57.06  Aligned_cols=34  Identities=24%  Similarity=0.449  Sum_probs=27.5

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT   47 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t   47 (173)
                      ..+||+++|++|||||||+++++.+.+.....++
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~   39 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPG   39 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCC
Confidence            3579999999999999999999987765443343

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.96  E-value=1.3e-07  Score=76.08  Aligned_cols=87  Identities=14%  Similarity=0.166  Sum_probs=53.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--cccch--------hh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--FRAVT--------RS  154 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--~~~~~--------~~  154 (173)
                      ...+|+++|.+|+||||+.+++....... ..++...+.........+......+||..|++.  ....+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999998653211 122322211100001112223456899999843  23332        55


Q ss_pred             hhcCCCEEEEEEeCCCCC
Q psy13826        155 YYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       155 ~~~~~~~~ilv~d~t~~~  172 (173)
                      ++..+.+.++|+|.+|..
T Consensus       117 ~l~~~~G~~vV~D~tn~~  134 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNTT  134 (469)
T ss_dssp             HHHTTCCSEEEEESCCCS
T ss_pred             HHHhCCCCEEEEeCCCCC
Confidence            677788999999999863

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.20  E-value=1.1e-06  Score=62.46  Aligned_cols=40  Identities=28%  Similarity=0.352  Sum_probs=34.1

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||||+++|+.+.|...+.+|.+...
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   67 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY   67 (204)
Confidence            3568999999999999999999999999888877765433

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.94  E-value=6.8e-06  Score=55.96  Aligned_cols=27  Identities=33%  Similarity=0.536  Sum_probs=22.2

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      .+||+++|++|||||||++++....+.
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~   28 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG   28 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC---
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc
Confidence            469999999999999999999876654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.92  E-value=1.3e-05  Score=59.01  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=22.6

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHH
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~  107 (173)
                      .......+++.|.+||||||+++.++
T Consensus        10 ~~~~~~i~~~~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A           10 HGMASMIVVFVGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             TTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCcceEEEEEeCCCCCCHHHHHHHHH
Confidence            34456789999999999999999998

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.92  E-value=1.4e-05  Score=65.92  Aligned_cols=62  Identities=23%  Similarity=0.205  Sum_probs=38.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCC-----CceeeeeEEEEEEE-CCeEEEEEEEeCCCccc
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-----HTIGVEFGTRIIEV-HGEKIKLQIWDTAGQER  147 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~-----~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~  147 (173)
                      .....|+++|.+|||||||+|++++....-...     .|.+...+.  ..+ ......+.++||+|...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~--~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWC--VPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEE--EECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEee--cccccCCCceEEEecCCCcCc
Confidence            356889999999999999999999876321222     222221111  111 12233577899999653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=97.91  E-value=1.6e-05  Score=60.43  Aligned_cols=39  Identities=28%  Similarity=0.380  Sum_probs=34.3

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|++|||||||+.+|+.+.|...+.+|.+..+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~  192 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY  192 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee
Confidence            357999999999999999999999999888888876544

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.89  E-value=6.5e-06  Score=63.11  Aligned_cols=37  Identities=19%  Similarity=0.104  Sum_probs=28.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhhccccc---CcccccceeEE
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFL---GLQLTQDYVCL   53 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~---~~~~t~~~~~~   53 (173)
                      ||+++|++|||||||+.++.++.+..   .+.+|++..+.
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~   40 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE   40 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE
Confidence            79999999999999999888665433   25678776554

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.89  E-value=1.5e-05  Score=60.59  Aligned_cols=40  Identities=23%  Similarity=0.194  Sum_probs=31.7

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhc--ccc-cCcccccceeEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQ--KYF-LGLQLTQDYVCLR   54 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~--~~~-~~~~~t~~~~~~~   54 (173)
                      .+||+++|++|||||||+++++.+  .+. ..+.+|++..+..
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~   45 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH   45 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE
Confidence            479999999999999999999987  443 3567787765543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.83  E-value=1.6e-05  Score=55.51  Aligned_cols=28  Identities=29%  Similarity=0.370  Sum_probs=25.1

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ...+||+++|++|||||||+++++.+.+
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~   48 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKI   48 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCcc
Confidence            4567999999999999999999998874

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.83  E-value=1e-05  Score=66.06  Aligned_cols=42  Identities=24%  Similarity=0.199  Sum_probs=26.9

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ....+||+++|++|||||||+++++.+.|...+.+|++....
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~   79 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVV   79 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEE
Confidence            456789999999999999999999999999888888876554

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.81  E-value=1.2e-05  Score=57.55  Aligned_cols=30  Identities=33%  Similarity=0.351  Sum_probs=26.7

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhccccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFL   42 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~   42 (173)
                      ...+||+++|++|||||||+++++.+.|..
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~   39 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP   39 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            346799999999999999999999988764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.80  E-value=8.9e-06  Score=58.55  Aligned_cols=36  Identities=14%  Similarity=0.174  Sum_probs=29.8

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD   49 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~   49 (173)
                      ..+||+++|++|||||||+.+|+.+.|...+.++++
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~   72 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIA   72 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEE
Confidence            357999999999999999999999877665555554

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.80  E-value=1.1e-05  Score=56.55  Aligned_cols=30  Identities=33%  Similarity=0.351  Sum_probs=26.1

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhccccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFL   42 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~   42 (173)
                      ...+||+++|++|||||||+++++.+.+..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~   75 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP   75 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCc
Confidence            456799999999999999999999988754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.79  E-value=1.4e-05  Score=56.39  Aligned_cols=32  Identities=16%  Similarity=0.066  Sum_probs=23.0

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLG   43 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~   43 (173)
                      .....+||+++|++|||||||++++.. .|...
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~   47 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN   47 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHS-CCCGG
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHh-cCCCc
Confidence            355678999999999999999986554 45444

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.79  E-value=1.5e-05  Score=61.20  Aligned_cols=39  Identities=13%  Similarity=0.191  Sum_probs=32.4

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ..+||+++|+++||||+|+++|..+.|...+ +|++....
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~  202 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE  202 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEE
Confidence            4569999999999999999999999987654 67765543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.78  E-value=4.1e-05  Score=52.89  Aligned_cols=26  Identities=31%  Similarity=0.428  Sum_probs=23.6

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      .+||+++|++|||||||+++++...+
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~   29 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREA   29 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            36999999999999999999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.75  E-value=3.6e-05  Score=57.04  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=26.1

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhccccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFL   42 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~   42 (173)
                      ...+||+++|++|||||||+++++...+..
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~   32 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYV   32 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcc
Confidence            356899999999999999999999877743

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.73  E-value=2e-05  Score=53.27  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      .||+++|++|||||||++++..+.+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~   26 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRS   26 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCe
Confidence            5899999999999999999998875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.71  E-value=1.9e-05  Score=57.05  Aligned_cols=28  Identities=21%  Similarity=0.212  Sum_probs=25.8

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      ..+||+++|++|||||||+++|+.+.|.
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~   55 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVD   55 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence            4689999999999999999999999885

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.70  E-value=4.1e-05  Score=55.78  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=27.1

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCc
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGL   44 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~   44 (173)
                      ....+||+++|++|||||||+++++...+....
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            446789999999999999999999998885554

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.68  E-value=2.5e-05  Score=58.31  Aligned_cols=25  Identities=28%  Similarity=0.636  Sum_probs=22.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      .|+++++|++|+|||||++.+++-.
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            5899999999999999999999754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.64  E-value=5.4e-05  Score=58.31  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ...+.++|++|+|||||++.+++
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999984

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.62  E-value=5.5e-05  Score=56.39  Aligned_cols=31  Identities=26%  Similarity=0.597  Sum_probs=22.6

Q ss_pred             eeeEEEEEcCCCCchhhhhHHh-hhcccccCc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQF-TEQKYFLGL   44 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~-~~~~~~~~~   44 (173)
                      +.++|+++|++|+|||||++++ ..+.+...+
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~   38 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEY   38 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC-----
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence            5789999999999999999984 455565554

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.61  E-value=3.8e-05  Score=57.41  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=23.5

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      .+||+++|++|||||||+++++...+
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~   28 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQ   28 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCC
Confidence            47999999999999999999998653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.61  E-value=6e-05  Score=56.03  Aligned_cols=33  Identities=18%  Similarity=0.332  Sum_probs=27.0

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT   47 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t   47 (173)
                      .+||+++|++|||||||+++++...+.....++
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~   35 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPG   35 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCC
Confidence            369999999999999999999988775444333

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.58  E-value=2.6e-05  Score=55.32  Aligned_cols=36  Identities=25%  Similarity=0.224  Sum_probs=22.8

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD   49 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~   49 (173)
                      ...+++++|++|+|||||+++++...|.....++.+
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G   60 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPG   60 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-----------
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCc
Confidence            346899999999999999999998876544445544

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.51  E-value=6.7e-05  Score=55.26  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=26.9

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcc-cccCcc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQK-YFLGLQ   45 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~-~~~~~~   45 (173)
                      ..++|+++|++|||||||+++++... |...+.
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~   53 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLG   53 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCC
Confidence            46899999999999999999999877 554443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.49  E-value=0.00027  Score=56.02  Aligned_cols=27  Identities=33%  Similarity=0.773  Sum_probs=23.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF  111 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~  111 (173)
                      ..++++++|++|+|||||++.+++..+
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l   67 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKF   67 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccc
Confidence            457899999999999999999998754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.49  E-value=8.4e-05  Score=56.31  Aligned_cols=28  Identities=36%  Similarity=0.368  Sum_probs=25.2

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      ...+|+++|++|||||||+++++..++.
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~   33 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA   33 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCcee
Confidence            4568999999999999999999998874

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.47  E-value=0.00014  Score=54.34  Aligned_cols=28  Identities=29%  Similarity=0.481  Sum_probs=24.7

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLG   43 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~   43 (173)
                      +||+++|++|||||||+++++...+...
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~   31 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSRQRVG   31 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTCEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcccC
Confidence            6999999999999999999998876433

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.46  E-value=4.4e-05  Score=54.66  Aligned_cols=28  Identities=21%  Similarity=0.232  Sum_probs=24.9

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ...+||+++|++|||||||+++++.+.+
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~   54 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKR   54 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSS
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence            3467999999999999999999998863

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.41  E-value=0.00084  Score=54.37  Aligned_cols=24  Identities=17%  Similarity=0.232  Sum_probs=20.4

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHH
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~  107 (173)
                      .....|+++|.+||||||+++.++
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999998

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.38  E-value=0.00018  Score=53.23  Aligned_cols=26  Identities=23%  Similarity=0.456  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhhccccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFL   42 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~   42 (173)
                      ||+++|++|||||||+++++...+..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~~~v   28 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNANQRV   28 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCc
Confidence            89999999999999999999886643

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.35  E-value=0.00015  Score=53.59  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=24.7

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ..+||+++|++|||||||+++++.+.+
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~   61 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQV   61 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            468999999999999999999998875

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.34  E-value=0.00011  Score=55.08  Aligned_cols=29  Identities=21%  Similarity=0.470  Sum_probs=26.1

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      ...+||+++|+++||||||+++++...|.
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~   52 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL   52 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence            35679999999999999999999998875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.30  E-value=0.00016  Score=53.74  Aligned_cols=27  Identities=22%  Similarity=0.459  Sum_probs=24.8

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ..+||+++|++|||||||+++++.+.+
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~   64 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERV   64 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence            468999999999999999999998876

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.22  E-value=0.00014  Score=55.01  Aligned_cols=32  Identities=25%  Similarity=0.497  Sum_probs=21.3

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhc-ccccC
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ-KYFLG   43 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~-~~~~~   43 (173)
                      .+..++|+++|++|+|||||++++... .++.+
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~   47 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPER   47 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC-------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCC
Confidence            356789999999999999999997653 55543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.20  E-value=0.00044  Score=55.13  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=21.9

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ....-|.++|++++|||+|+|++++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            3456788999999999999999986

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.14  E-value=0.00018  Score=51.73  Aligned_cols=32  Identities=9%  Similarity=0.061  Sum_probs=22.1

Q ss_pred             eCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826        141 DTAGQERFRAVTRSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       141 D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~  172 (173)
                      +.+||+.++.+|+.||.++|++|+|+|.+|++
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~  139 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHK  139 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTC
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHh
Confidence            44689999999999999999999999999975

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.13  E-value=0.00018  Score=55.92  Aligned_cols=32  Identities=25%  Similarity=0.574  Sum_probs=22.9

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhh-hcccccCc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFT-EQKYFLGL   44 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~-~~~~~~~~   44 (173)
                      +..++|+++|++|+|||||++++. .+.|...+
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~   67 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERV   67 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC-----
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence            456899999999999999999954 45554443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.12  E-value=0.00026  Score=56.02  Aligned_cols=29  Identities=24%  Similarity=0.579  Sum_probs=25.4

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      .+..++|+++|++|+|||||++.++...+
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence            45678999999999999999999998776

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.08  E-value=0.00033  Score=48.92  Aligned_cols=22  Identities=45%  Similarity=0.782  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      +++++|++|+|||||++.+++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998864

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.05  E-value=0.00046  Score=52.32  Aligned_cols=30  Identities=30%  Similarity=0.273  Sum_probs=26.6

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      +....+|+++|++|||||||+++++...+.
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~   36 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVS   36 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence            456679999999999999999999998874

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.03  E-value=0.00036  Score=48.58  Aligned_cols=22  Identities=18%  Similarity=0.551  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|++|+|||||++.+.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.91  E-value=0.00051  Score=48.62  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .++++|++|+|||||++.+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999986

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.89  E-value=0.00069  Score=51.19  Aligned_cols=28  Identities=39%  Similarity=0.429  Sum_probs=24.6

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      ...+|+++|++|||||||+++++...+.
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~   34 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS   34 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEE
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCcc
Confidence            3458999999999999999999988763

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.86  E-value=0.00045  Score=53.35  Aligned_cols=29  Identities=21%  Similarity=0.468  Sum_probs=25.7

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhccccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFL   42 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~   42 (173)
                      ...+|+++|+++||||||+++++...|..
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p   58 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLP   58 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCC
Confidence            45699999999999999999999988743

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.85  E-value=0.00076  Score=52.16  Aligned_cols=29  Identities=17%  Similarity=0.379  Sum_probs=25.3

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLG   43 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~   43 (173)
                      ..+|+++|++|+|||||+++++...|...
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~   62 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFLPR   62 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcCCC
Confidence            34899999999999999999999887443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.85  E-value=0.00068  Score=47.26  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|++|+||||+++.+++.
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999875

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.84  E-value=0.00069  Score=52.62  Aligned_cols=25  Identities=40%  Similarity=0.514  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      +||+++|.+|||||||+++++...+
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~   27 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGI   27 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Confidence            4999999999999999999998774

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.83  E-value=0.0014  Score=46.61  Aligned_cols=24  Identities=25%  Similarity=0.203  Sum_probs=20.9

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ....+.|+|++|+|||||++.+.+
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998875

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.81  E-value=0.00071  Score=48.09  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|++|||||||++.++..
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999999864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.80  E-value=0.00072  Score=47.60  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=19.3

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      |+|+|++||||+||+++++..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999854

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.79  E-value=0.00074  Score=47.54  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|++|+|||||++.+++.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4889999999999999999874

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=96.79  E-value=0.00054  Score=55.15  Aligned_cols=25  Identities=32%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      .+||+++|++|||||||+++++.+.
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~  257 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQE  257 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4789999999999999999999875

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.77  E-value=0.00077  Score=48.63  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      -++++|++|+|||||++.+++..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58899999999999999998753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.76  E-value=0.0008  Score=49.89  Aligned_cols=25  Identities=20%  Similarity=0.454  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ++++++|.+|||||||++++.....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            5999999999999999999997665

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=96.75  E-value=0.00064  Score=54.53  Aligned_cols=27  Identities=33%  Similarity=0.476  Sum_probs=23.9

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ..+||+++|++|||||||+++++...+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~  249 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDR  249 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence            347899999999999999999998754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.74  E-value=0.00084  Score=47.70  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|++|+|||||++.+++-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.71  E-value=0.0009  Score=48.10  Aligned_cols=22  Identities=32%  Similarity=0.634  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|++|+|||||++.+++-
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5889999999999999999874

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.70  E-value=0.00094  Score=47.56  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|++|+||||+++.++..
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            4889999999999999999875

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.70  E-value=0.00088  Score=50.53  Aligned_cols=29  Identities=17%  Similarity=0.438  Sum_probs=25.4

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      ....+|+++|++++|||||+++++...+.
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~l   50 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFL   50 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcC
Confidence            34569999999999999999999988763

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.66  E-value=0.00095  Score=47.56  Aligned_cols=26  Identities=27%  Similarity=0.396  Sum_probs=22.9

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ..+++++|.+|+|||+|+.+++...+
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            46899999999999999999997643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.66  E-value=0.00079  Score=46.45  Aligned_cols=18  Identities=33%  Similarity=0.601  Sum_probs=16.4

Q ss_pred             EEEEEeCCCCChHHHHHH
Q psy13826         88 KYIIIGDMGVGKSCLLHQ  105 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~  105 (173)
                      -++++|++|+|||||++.
T Consensus        11 i~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEECCTTSCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            478999999999999994

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.65  E-value=0.0017  Score=50.47  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=21.3

Q ss_pred             eE-EEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FK-YIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k-~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ++ |+++|++|+|||||+++++...+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCc
Confidence            45 99999999999999999998776

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.63  E-value=0.00093  Score=52.54  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      +||+++|.++||||||+++++....
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~   25 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDV   25 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Confidence            4899999999999999999998763

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=96.62  E-value=0.0007  Score=54.59  Aligned_cols=25  Identities=32%  Similarity=0.632  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      +||+++|++|||||||+++++...+
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~  268 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDR  268 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTB
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCC
Confidence            7999999999999999999998864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.62  E-value=0.00098  Score=51.51  Aligned_cols=27  Identities=41%  Similarity=0.438  Sum_probs=24.2

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ..++++++|++|||||||+++++...+
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~  192 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKP  192 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            456999999999999999999998765

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.61  E-value=0.00044  Score=52.04  Aligned_cols=32  Identities=9%  Similarity=0.056  Sum_probs=27.3

Q ss_pred             CCCccccccchhhhhcCCCEEEEEEeCCCCCC
Q psy13826        142 TAGQERFRAVTRSYYRGAAGALMVIDVSHVKE  173 (173)
Q Consensus       142 ~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~S  173 (173)
                      .+||+.++.+|+.||.++|++|+|+|.+|++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR  225 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR  225 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCC
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhH
Confidence            46889999999999999999999999999863

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.60  E-value=0.0013  Score=45.07  Aligned_cols=22  Identities=36%  Similarity=0.668  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .|+++|++|+||||+++.+.+.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.60  E-value=0.0012  Score=46.69  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .-|+++|++||||||+++.+...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.58  E-value=0.0011  Score=46.60  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ||++|++|+|||+|+.++...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.57  E-value=0.0017  Score=46.12  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .++++|++|+|||+|+.++...
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999988853

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.57  E-value=0.0014  Score=48.80  Aligned_cols=26  Identities=27%  Similarity=0.677  Sum_probs=22.2

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      +.+.++++|++|+|||+|++-++.-.
T Consensus         1 f~f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            1 FDFNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             CEEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCC
Confidence            35799999999999999999887543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.57  E-value=0.0013  Score=44.78  Aligned_cols=22  Identities=18%  Similarity=0.147  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .|++.|.+|+||||+++.+...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.54  E-value=0.0017  Score=45.68  Aligned_cols=28  Identities=18%  Similarity=0.337  Sum_probs=22.5

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ........|++.|.+|+||||+.+.+..
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3344456899999999999999999875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.53  E-value=0.0015  Score=44.69  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      -++++|+.|+|||||++.+++..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999998754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.52  E-value=0.0016  Score=48.73  Aligned_cols=26  Identities=31%  Similarity=0.526  Sum_probs=23.0

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      ..++++++|.+|||||||++++....
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCc
Confidence            34789999999999999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.50  E-value=0.0016  Score=45.88  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      -.++++|++|+||||+++.+.+.-
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999998753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.47  E-value=0.0017  Score=45.27  Aligned_cols=21  Identities=43%  Similarity=0.662  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      -++++|++|+||||+++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.47  E-value=0.0017  Score=44.59  Aligned_cols=21  Identities=33%  Similarity=0.450  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      -|++.|.+|+||||+.+.+..
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            589999999999999999986

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.46  E-value=0.0017  Score=45.80  Aligned_cols=22  Identities=23%  Similarity=0.511  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      --++++|++|+||||+++.+.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.46  E-value=0.0015  Score=45.33  Aligned_cols=22  Identities=18%  Similarity=0.551  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .++++|++|+|||+|+..+...
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999988763

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.45  E-value=0.0019  Score=45.47  Aligned_cols=21  Identities=33%  Similarity=0.616  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .|+++|.+|+||||+.+.+..
T Consensus        27 ~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           27 RIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999874

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.43  E-value=0.0014  Score=45.35  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -.++++|++|+|||+|++.+++.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.43  E-value=0.0016  Score=50.48  Aligned_cols=24  Identities=38%  Similarity=0.475  Sum_probs=21.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKF  111 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~  111 (173)
                      .++++|++|||||||++.+++...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999997643

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.43  E-value=0.0014  Score=46.26  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .++++|++|+|||+|++.+..
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999987765

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.42  E-value=0.0018  Score=44.06  Aligned_cols=19  Identities=32%  Similarity=0.377  Sum_probs=17.9

Q ss_pred             EEEEEeCCCCChHHHHHHH
Q psy13826         88 KYIIIGDMGVGKSCLLHQF  106 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~  106 (173)
                      -|++.|.+|+||||+.+.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999998

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=96.40  E-value=0.0013  Score=52.09  Aligned_cols=28  Identities=21%  Similarity=0.387  Sum_probs=23.2

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ...+||+++|+.++|||||+++++.+.+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~   59 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNV   59 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC---
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4568999999999999999999998876

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.40  E-value=0.0016  Score=47.38  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.39  E-value=0.0022  Score=45.63  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      +|++.|.+|+||||+++.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.38  E-value=0.0022  Score=45.63  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      +|++.|.+|+||||+++.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.38  E-value=0.0021  Score=46.84  Aligned_cols=21  Identities=24%  Similarity=0.569  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHH
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~  107 (173)
                      -.++++|++|+||||+++.++
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.38  E-value=0.0021  Score=44.21  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -|++.|.+|+||||+.+.+...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999863

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.38  E-value=0.0018  Score=46.75  Aligned_cols=22  Identities=41%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999998864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.37  E-value=0.0019  Score=45.52  Aligned_cols=22  Identities=36%  Similarity=0.646  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|++|+|||||++.+++.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4789999999999999998863

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.36  E-value=0.0021  Score=45.24  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ..|++.|.+|+||||+++.+...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998753

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=96.35  E-value=0.00089  Score=54.65  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=25.9

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQ   45 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~   45 (173)
                      ..+|+++|++++|||||+.++....+...+.
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~   34 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEA   34 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccC
Confidence            3589999999999999999999877754433

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.34  E-value=0.0026  Score=44.10  Aligned_cols=21  Identities=43%  Similarity=0.518  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .|++.|.+|+||||+++.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.33  E-value=0.0024  Score=43.87  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=19.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      -.++++|.+|+||||+++.+..
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999998874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.32  E-value=0.0023  Score=43.89  Aligned_cols=23  Identities=26%  Similarity=0.624  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -.+++.|++|+|||++++.++..
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.31  E-value=0.0023  Score=46.83  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.30  E-value=0.003  Score=44.87  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -++++|++|+|||+++..+...
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999988754

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.30  E-value=0.0024  Score=45.58  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|++|+|||||++.+++.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.28  E-value=0.0027  Score=43.89  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..|+++|.+|+||||+.+.+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.28  E-value=0.0028  Score=44.62  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .+|+++|.+|+||||+++.+.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999886

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.28  E-value=0.0025  Score=44.96  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      --|+++|++|+||||+++.+.+.
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988753

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.28  E-value=0.0028  Score=44.38  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .|++.|.+|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999876

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.27  E-value=0.0028  Score=45.28  Aligned_cols=22  Identities=18%  Similarity=0.448  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .|+++|+||+||+|...+++..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988753

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=96.27  E-value=0.0029  Score=49.70  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=22.6

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ..+||+++|++++|||||+++++..
T Consensus         7 ~~~~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A            7 PEVNIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCc
Confidence            4579999999999999999999874

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.26  E-value=0.0016  Score=51.07  Aligned_cols=27  Identities=30%  Similarity=0.341  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ..+++.++|.+|||||||+++++...+
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~   47 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQA   47 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence            456899999999999999999998765

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.26  E-value=0.0032  Score=44.54  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ..+.++|+.|+|||||++.+.+-
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988763

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.26  E-value=0.0027  Score=47.94  Aligned_cols=24  Identities=33%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKF  111 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~  111 (173)
                      .++++|++|||||||++.+.+..-
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            568999999999999999987643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.23  E-value=0.0023  Score=47.42  Aligned_cols=22  Identities=36%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|+.|+|||||++.+++-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.21  E-value=0.0091  Score=46.26  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      -++++|++|+|||||++.+++-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999999854

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.21  E-value=0.0026  Score=45.52  Aligned_cols=22  Identities=27%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.20  E-value=0.003  Score=43.83  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..|++.|.+|+||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.19  E-value=0.0044  Score=48.93  Aligned_cols=25  Identities=20%  Similarity=0.493  Sum_probs=22.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      ...++++|++|+|||||++.+++-.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCC
Confidence            3479999999999999999999843

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.19  E-value=0.0026  Score=42.99  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|++|+|||+|++.+++.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.19  E-value=0.003  Score=43.73  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=19.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..|++.|.+|+||||+++.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.19  E-value=0.0025  Score=45.78  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.19  E-value=0.0028  Score=46.23  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.18  E-value=0.003  Score=47.87  Aligned_cols=21  Identities=29%  Similarity=0.352  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .++|+|++|+|||||++.+++
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhh
Confidence            689999999999999998874

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.17  E-value=0.0025  Score=47.58  Aligned_cols=22  Identities=41%  Similarity=0.623  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|+.|+|||||++.+++-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.17  E-value=0.0033  Score=44.93  Aligned_cols=22  Identities=32%  Similarity=0.350  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..|+++|++|+||||+++.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.17  E-value=0.0026  Score=46.95  Aligned_cols=22  Identities=41%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|+.|+|||||++.+++-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.16  E-value=0.0029  Score=46.42  Aligned_cols=22  Identities=32%  Similarity=0.345  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.16  E-value=0.0034  Score=43.63  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .++++|++|+|||+++..+...
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999888764

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.16  E-value=0.0031  Score=43.90  Aligned_cols=21  Identities=48%  Similarity=0.795  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      +++++|++|+|||+|+..++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999976664

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.14  E-value=0.0036  Score=44.52  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      +|++.|.+|+||||+++.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999875

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.14  E-value=0.0034  Score=43.64  Aligned_cols=22  Identities=23%  Similarity=0.296  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|.+|+|||||+++++..
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            5789999999999999998864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.14  E-value=0.003  Score=46.19  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.14  E-value=0.0031  Score=46.29  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.13  E-value=0.0031  Score=46.95  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=19.7

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      ++++|++|+|||+|++.+++.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999874

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.13  E-value=0.0044  Score=42.83  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..|++.|.+|+||||+.+.+..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999874

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.12  E-value=0.0032  Score=43.29  Aligned_cols=21  Identities=38%  Similarity=0.615  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      +|+++|.+|+||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.12  E-value=0.0031  Score=47.67  Aligned_cols=19  Identities=47%  Similarity=0.784  Sum_probs=0.0

Q ss_pred             EEEEeCCCCChHHHHHHHH
Q psy13826         89 YIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~  107 (173)
                      ++++|++|||||||++.+.
T Consensus       168 ~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          168 CILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.12  E-value=0.0028  Score=46.24  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.12  E-value=0.0028  Score=47.01  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4789999999999999998874

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.12  E-value=0.0028  Score=47.09  Aligned_cols=22  Identities=45%  Similarity=0.540  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999999875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.11  E-value=0.0032  Score=46.74  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999885

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.11  E-value=0.0039  Score=44.93  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -++++|++|+|||+|+..+...
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6889999999999999987754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.11  E-value=0.0021  Score=50.07  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      ++|+++|.+|||||+|+++++...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            489999999999999999999764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.11  E-value=0.002  Score=46.42  Aligned_cols=22  Identities=18%  Similarity=0.389  Sum_probs=14.9

Q ss_pred             EEEEEeCCCCChHHHHHHHH-hC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFT-EQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~-~~  109 (173)
                      -++++|++|+||||+++.++ +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58899999999999999998 53

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.10  E-value=0.0036  Score=51.25  Aligned_cols=29  Identities=17%  Similarity=0.230  Sum_probs=26.0

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      +...+|+++|.+|+|||||+++++...+.
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~   91 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVP   91 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence            45679999999999999999999998873

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.10  E-value=0.0042  Score=43.77  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      +.|.++|.+|+||||+.+.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999986

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.09  E-value=0.003  Score=45.81  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.09  E-value=0.0033  Score=45.87  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=19.6

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      ++++|++|+|||+|++.+++.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.07  E-value=0.0035  Score=46.36  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .++++|+.|+||||+++.+++
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999999876

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.07  E-value=0.0043  Score=45.22  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.9

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ...|++.|.+|+||||+++++..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999974

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=96.06  E-value=0.0019  Score=49.73  Aligned_cols=24  Identities=33%  Similarity=0.332  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCchhhhhHHhhhccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      +|+++|.++||||||+++++..++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~  183 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKP  183 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCC
Confidence            588999999999999999997764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.06  E-value=0.0031  Score=46.93  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.06  E-value=0.0031  Score=46.35  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999998875

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.06  E-value=0.0058  Score=43.15  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ....|+++|.+|+||||+++.+...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999999864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.04  E-value=0.0032  Score=46.48  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.03  E-value=0.0036  Score=46.26  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.03  E-value=0.005  Score=46.76  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=21.0

Q ss_pred             CCCCCCCCCCCcceeeEEEEEcCCCCchhhhhHHhhhc
Q psy13826          1 MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      |+.|++..++     .-++++|++|+|||+|..++...
T Consensus         1 ~~~~~~~~~~-----~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A            1 MSDISKASLP-----KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             ------CCCC-----EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCccccCCCC-----cEEEEECCCccCHHHHHHHHHHh
Confidence            7777665432     24788999999999999988754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.02  E-value=0.0011  Score=50.44  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      -.++++|++|||||||++.+.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            378999999999999999998754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.01  E-value=0.0037  Score=46.76  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999999875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.01  E-value=0.0031  Score=48.84  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=21.4

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .-+++++|++|+|||||++.+++-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999998864

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=96.01  E-value=0.0026  Score=51.16  Aligned_cols=25  Identities=20%  Similarity=0.494  Sum_probs=22.8

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ..+||+++|++++|||||+.+++.+
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4689999999999999999999865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.98  E-value=0.0048  Score=42.89  Aligned_cols=23  Identities=22%  Similarity=0.491  Sum_probs=20.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ..|+++|.+|+||||+.+.+...
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999998764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=95.98  E-value=0.01  Score=46.57  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=22.1

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhh
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~   36 (173)
                      ...++|+++|..++|||||+.+++
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~   31 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALT   31 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            456899999999999999999998

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.97  E-value=0.0046  Score=44.13  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..|+++|.+|+||||+.+.+..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.96  E-value=0.0041  Score=47.24  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=21.6

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ....-+.|+|++|+|||||++.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            3456789999999999999998876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.96  E-value=0.0049  Score=44.24  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..|++.|.+|+||||+++.+..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.95  E-value=0.0033  Score=43.03  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -.+++.|++|+|||++++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            35799999999999999988754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=95.95  E-value=0.0037  Score=46.06  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999875

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.94  E-value=0.0053  Score=43.19  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..|++.|.+|+||||+++.+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.94  E-value=0.0038  Score=46.29  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999998865

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=95.93  E-value=0.0036  Score=51.87  Aligned_cols=25  Identities=20%  Similarity=0.494  Sum_probs=22.6

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ..+||+++|++++|||||+++++..
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHh
Confidence            4679999999999999999999855

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.92  E-value=0.0072  Score=45.26  Aligned_cols=24  Identities=25%  Similarity=0.348  Sum_probs=21.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ...-|++.|++|+||||+++.+..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999975

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.92  E-value=0.0046  Score=44.21  Aligned_cols=23  Identities=17%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -.+++.|++|+|||++++.+...
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988753

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.92  E-value=0.0052  Score=42.44  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .|+++|.+|+|||++...+..
T Consensus         7 ~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            7 NIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999988864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.91  E-value=0.0056  Score=42.39  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=19.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..|++.|.+|+||||+.+.+..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.91  E-value=0.0043  Score=47.42  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|++|+|||+|++.+++.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.91  E-value=0.0048  Score=42.50  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..|++.|.+|+||||+++.+..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=95.89  E-value=0.0058  Score=48.45  Aligned_cols=27  Identities=19%  Similarity=0.481  Sum_probs=23.8

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      ...+||+++|+.++|||||+.+++.+.
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~   48 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDS   48 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhc
Confidence            456899999999999999999998654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=95.89  E-value=0.0048  Score=51.90  Aligned_cols=27  Identities=30%  Similarity=0.637  Sum_probs=24.4

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      ..++|+++|++++|||||+++++...+
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~   94 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENL   94 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            457999999999999999999998765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.88  E-value=0.0048  Score=47.57  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ...|.++|.+|+|||||+++++..
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999863

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.88  E-value=0.0051  Score=44.28  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=18.0

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      |+++|+||+||+|.+.+++..
T Consensus        32 I~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-32
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-07
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-32
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-07
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	9e-32
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-05
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-30
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-07
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-28
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-07
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	7e-27
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-07
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	7e-26
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	6e-08
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-25
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-06
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	6e-24
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-07
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	9e-24
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	6e-08
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-22
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-07
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-19
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	5e-08
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	6e-18
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-05
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	8e-18
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-07
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-17
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-06
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-17
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-08
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-15
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	6e-06
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-14
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	6e-06
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-14
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-07
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-14
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-05
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	8e-14
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-05
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	9e-14
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-05
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-13
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-05
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	5e-13
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	6e-05
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-13
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-04
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-12
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-05
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-12
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-04
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-12
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	9e-07
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-12
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-05
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	3e-12
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	9e-06
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-12
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-04
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-11
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	7e-06
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-11
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-05
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-11
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	0.004
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-11
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-05
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-11
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	8e-06
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-11
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	3e-06
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-11
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-04
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-10
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-04
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-10
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	8e-04
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-10
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	9e-04
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	6e-10
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-05
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	9e-10
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-04
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-09
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-05
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	6e-09
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	6e-04
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-08
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-05
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-08
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-05
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	3e-08
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	9e-05
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-08
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.001
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-07
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	0.003
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-07
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-05
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-07
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-04
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	6e-07
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	0.002
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-06
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	7e-05
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	4e-06
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-05
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	5e-06
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-04
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-05
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	9e-04
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	0.004

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (281), Expect = 2e-32
 Identities = 47/90 (52%), Positives = 67/90 (74%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
           Y Y+FK ++IG+ GVGKSCLL +F++  +  D   TIGV+F  + +E+ G+ +KLQIWDT
Sbjct: 3   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62

Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVSHVK 172
           AGQERFR +T SYYRG+ G ++V DV+  +
Sbjct: 63  AGQERFRTITSSYYRGSHGIIIVYDVTDQE 92

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 7/138 (5%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL 71
           Y Y+FK ++IG+ GVGKSCLL +F++  Y      T               T K  +W  
Sbjct: 3   YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW-- 60

Query: 72  VSKMSSSGQYSYSYIFK-YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV 130
                ++GQ  +  I   Y       +    +  Q +                 T +  +
Sbjct: 61  ----DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 116

Query: 131 HGEKIKLQIWDTAGQERF 148
            G K  L+       +  
Sbjct: 117 VGNKCDLKDKRVVEYDVA 134

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  111 bits (278), Expect = 3e-32
 Identities = 48/89 (53%), Positives = 68/89 (76%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           +Y Y+FK ++IGD GVGK+C+L +F+E  F      TIG++F  R IE+ G++IKLQIWD
Sbjct: 2   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           TAGQERFR +T +YYRGA G ++V D+++
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITN 90

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 15/30 (50%), Positives = 24/30 (80%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          +Y Y+FK ++IGD GVGK+C+L +F+E  +
Sbjct: 2  TYDYLFKLLLIGDSGVGKTCVLFRFSEDAF 31

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  110 bits (275), Expect = 9e-32
 Identities = 47/87 (54%), Positives = 66/87 (75%)

Query: 86  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
           I K ++IGD GVGKSCLL +F E KF P    TIG++F  + ++++G+K+KLQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 146 ERFRAVTRSYYRGAAGALMVIDVSHVK 172
           ERFR +T +YYRGA G ++V D++  +
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDER 88

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40
          I K ++IGD GVGKSCLL +F E K+
Sbjct: 2  IMKILLIGDSGVGKSCLLVRFVEDKF 27

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 1e-30
 Identities = 45/88 (51%), Positives = 67/88 (76%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
           Y ++FK ++IG+ GVGK+CL+ +FT+  F P    TIGV+F  + +E++GEK+KLQIWDT
Sbjct: 2   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61

Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVSH 170
           AGQERFR++T+SYYR A   ++  D++ 
Sbjct: 62  AGQERFRSITQSYYRSANALILTYDITC 89

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL 71
           Y ++FK ++IG+ GVGK+CL+ +FT+  +  G   T     +           K  +W  
Sbjct: 2   YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW-- 59

Query: 72  VSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV 130
                ++GQ  +  I +        +  +  +      + +P+    I      ++I V
Sbjct: 60  ----DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITV 114

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (253), Expect = 2e-28
 Identities = 38/90 (42%), Positives = 63/90 (70%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
           + Y+FK +IIG+  VGK+  L ++ +  F P    T+G++F  + I  + ++IKLQIWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVSHVK 172
           AGQER+R +T +YYRGA G +++ D+++ +
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEE 91

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (105), Expect = 6e-07
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          + Y+FK +IIG+  VGK+  L ++ +  +
Sbjct: 2  FDYMFKILIIGNSSVGKTSFLFRYADDSF 30

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 7e-27
 Identities = 42/92 (45%), Positives = 64/92 (69%), Gaps = 1/92 (1%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIW 140
            Y   FK +++GD GVGK+CLL +F +  F+      T+G++F  ++++V G K+KLQ+W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 141 DTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172
           DTAGQERFR+VT +YYR A   L++ DV++  
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKA 93

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 3e-07
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYF 41
           Y   FK +++GD GVGK+CLL +F +  + 
Sbjct: 2  FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFL 32

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (236), Expect = 7e-26
 Identities = 60/89 (67%), Positives = 76/89 (85%)

Query: 82  SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
           +Y ++FK+++IG+ G GKSCLLHQF E+KF  D  HTIGVEFG++II V G+ +KLQIWD
Sbjct: 1   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 60

Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVSH 170
           TAGQERFR+VTRSYYRGAAGAL+V D++ 
Sbjct: 61  TAGQERFRSVTRSYYRGAAGALLVYDITS 89

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 6e-08
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLW 69
          +Y ++FK+++IG+ G GKSCLLHQF E+K+      T        +        K  +W
Sbjct: 1  TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 59

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.9 bits (235), Expect = 1e-25
 Identities = 48/83 (57%), Positives = 59/83 (71%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K +IIG+ GVGKS LL +FT+  F P+   TIGV+F  + I V G K KL IWDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           RFR +T SYYRGA G ++V DV+
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVT 90

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKM 75
           K +IIG+ GVGKS LL +FT+  +   L  T          +      K  +W      
Sbjct: 8  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW------ 61

Query: 76 SSSGQYSYSYIFKYIIIGDMGV 97
           ++GQ  +  +      G  GV
Sbjct: 62 DTAGQERFRTLTPSYYRGAQGV 83

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (224), Expect = 6e-24
 Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 10/98 (10%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE--------- 133
           Y Y+ K + +GD GVGK+  L+++T+ KF P    T+G++F  + +  + +         
Sbjct: 2   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61

Query: 134 -KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
            K+ LQ+WDTAGQERFR++T +++R A G L++ D++ 
Sbjct: 62  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS 99

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 4e-07
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 4/143 (2%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT--QDYVCLRLVSTSQPITRKNLLW 69
           Y Y+ K + +GD GVGK+  L+++T+ K+      T   D+   R+V  +Q     +   
Sbjct: 2   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61

Query: 70  ALVS--KMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRI 127
             V      ++GQ  +  +        MG      L        + +    +        
Sbjct: 62  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121

Query: 128 IEVHGEKIKLQIWDTAGQERFRA 150
            ++     K  + D       +A
Sbjct: 122 PDIVLIGNKADLPDQREVNERQA 144

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 9e-24
 Identities = 80/87 (91%), Positives = 84/87 (96%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
           YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
           AGQERFRAVTRSYYRGAAGALMV D++
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDIT 87

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 6e-08
 Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 12  YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL 71
           YSYIFKYIIIGDMGVGKSCLLHQFTE+K+      T        +        K  +W  
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW-- 58

Query: 72  VSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI 119
                ++GQ  +  + +    G  G      + + +    +       
Sbjct: 59  ----DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA 102

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (213), Expect = 2e-22
 Identities = 52/86 (60%), Positives = 65/86 (75%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
           Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR I+V G+ IK QIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 143 AGQERFRAVTRSYYRGAAGALMVIDV 168
           AGQER+R +T +YYRGA GAL+V D+
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDI 86

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 2e-07
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)

Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL 71
          Y Y+FK ++IGD GVGKS LL +FT  ++        +      V  +    + +     
Sbjct: 1  YDYLFKVVLIGDSGVGKSNLLSRFTRNEF------NLESKSTIGVEFATRSIQVDGKTIK 54

Query: 72 VSKMSSSGQYSYSYIFKYIIIGDMG 96
               ++GQ  Y  I      G +G
Sbjct: 55 AQIWDTAGQERYRRITSAYYRGAVG 79

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (192), Expect = 2e-19
 Identities = 60/85 (70%), Positives = 73/85 (85%)

Query: 84  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
           SY+FKYIIIGD GVGKSCLL QFT+++F P    TIGVEFG R++ + G++IKLQIWDTA
Sbjct: 1   SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 60

Query: 144 GQERFRAVTRSYYRGAAGALMVIDV 168
           GQE FR++TRSYYRGAAGAL+V D+
Sbjct: 61  GQESFRSITRSYYRGAAGALLVYDI 85

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 5e-08
 Identities = 27/80 (33%), Positives = 36/80 (45%)

Query: 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALV 72
          SY+FKYIIIGD GVGKSCLL QFT++++     LT        +        K  +W   
Sbjct: 1  SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 60

Query: 73 SKMSSSGQYSYSYIFKYIII 92
           + S        Y      +
Sbjct: 61 GQESFRSITRSYYRGAAGAL 80

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (181), Expect = 6e-18
 Identities = 33/86 (38%), Positives = 55/86 (63%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           FK +++G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 147 RFRAVTRSYYRGAAGALMVIDVSHVK 172
           R+ ++   YYRGA  A++V D+++ +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEE 92

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 5e-05
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          FK +++G+  VGKS L+ +F + ++
Sbjct: 7  FKLVLLGESAVGKSSLVLRFVKGQF 31

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (181), Expect = 8e-18
 Identities = 35/89 (39%), Positives = 57/89 (64%)

Query: 84  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
           +Y FK +++G+  VGK+ L+ ++ E KF      T+G  F T+ + + G+++ L IWDTA
Sbjct: 1   AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTA 60

Query: 144 GQERFRAVTRSYYRGAAGALMVIDVSHVK 172
           GQERF A+   YYR + GA++V D++   
Sbjct: 61  GQERFHALGPIYYRDSNGAILVYDITDED 89

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALV 72
          +Y FK +++G+  VGK+ L+ ++ E K+         ++     S              +
Sbjct: 1  AYSFKVVLLGEGCVGKTSLVLRYCENKF------NDKHITTLGASFLTKKLNIGGKRVNL 54

Query: 73 SKMSSSGQYSYSYIFKYIIIGDMGV 97
          +   ++GQ  +  +         G 
Sbjct: 55 AIWDTAGQERFHALGPIYYRDSNGA 79

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 1e-17
 Identities = 33/84 (39%), Positives = 55/84 (65%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           FK + +G+  VGK+ L+ +F    F      TIG++F ++ + +    I+LQ+WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
           RFR++  SY R +A A++V D+++
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITN 84

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 16/94 (17%), Positives = 29/94 (30%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKM 75
           FK + +G+  VGK+ L+ +F    +    Q T     L      +  T +  LW    + 
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQ 109
                           +    +       Q T+ 
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKW 94

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 2e-17
 Identities = 41/87 (47%), Positives = 57/87 (65%)

Query: 84  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
           S +FK I++GD GVGKS L++++   KF     HTIGVEF  + +EV G  + +QIWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 144 GQERFRAVTRSYYRGAAGALMVIDVSH 170
           GQERFR++   +YRG+   L+   V  
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDD 90

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 6/107 (5%)

Query: 13  SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALV 72
           S +FK I++GD GVGKS L++++   K+   L  T     L              +W   
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW--- 60

Query: 73  SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI 119
               ++GQ  +  +      G      +  +      + + +     
Sbjct: 61  ---DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 104

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.6 bits (166), Expect = 2e-15
 Identities = 37/85 (43%), Positives = 57/85 (67%)

Query: 86  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
           + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ + V    + +QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 146 ERFRAVTRSYYRGAAGALMVIDVSH 170
           ERF+++  ++YRGA   ++V DV+ 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTA 86

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (98), Expect = 6e-06
 Identities = 12/26 (46%), Positives = 20/26 (76%)

Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40
          + K II+GD GVGK+ L++Q+  +K+
Sbjct: 2  LLKVIILGDSGVGKTSLMNQYVNKKF 27

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.7 bits (156), Expect = 3e-14
 Identities = 39/88 (44%), Positives = 60/88 (68%), Gaps = 1/88 (1%)

Query: 86  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
           IFK I+IGD  VGK+CL ++F   +F      TIGV+F  R +++ GE+IK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 146 ERF-RAVTRSYYRGAAGALMVIDVSHVK 172
           ERF +++ + YYR     + V D++++ 
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMA 89

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (97), Expect = 6e-06
 Identities = 18/75 (24%), Positives = 26/75 (34%)

Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSK 74
          IFK I+IGD  VGK+CL ++F   ++    + T                 K  LW    +
Sbjct: 2  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 75 MSSSGQYSYSYIFKY 89
                    Y    
Sbjct: 62 ERFRKSMVQHYYRNV 76

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 3e-14
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
           M+       + + K +++GD  VGK+CLL  +    F  +   T+  +     + V G++
Sbjct: 1   MAHG---PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQ 56

Query: 135 IKLQIWDTAGQERFRAVTRSYYR 157
             L ++DTAGQE +  +    Y 
Sbjct: 57  YLLGLYDTAGQEDYDRLRPLSYP 79

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 4  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLV 56
          M+       + + K +++GD  VGK+CLL  +    +      T        V
Sbjct: 1  MAHG---PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV 50

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.5 bits (159), Expect = 4e-14
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 83  YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
           Y    + +++G    GKS ++ Q      +     T G+       +   +K+   ++D 
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRILHVVL----TSGIF----ETKFQVDKVNFHMFDV 54

Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVSH 170
            GQ   R      +      + V+  S 
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSS 82

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 6/29 (20%), Positives = 12/29 (41%)

Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          Y    + +++G    GKS ++ Q      
Sbjct: 3  YRATHRLLLLGAGESGKSTIVKQMRILHV 31

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 8e-14
 Identities = 33/85 (38%), Positives = 52/85 (61%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++G+  VGKS ++ +F    F  +   TIG  F T+ + ++   +K +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 148 FRAVTRSYYRGAAGALMVIDVSHVK 172
           F ++   YYR A  AL+V DV+  +
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQ 89

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (91), Expect = 4e-05
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 2/105 (1%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVS--K 74
           K +++G+  VGKS ++ +F    +    + T     L    T    T K  +W      +
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI 119
            +S     Y      +++ D+   +S +  +   ++        I
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI 109

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 9e-14
 Identities = 38/86 (44%), Positives = 60/86 (69%), Gaps = 1/86 (1%)

Query: 86  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI-KLQIWDTAG 144
           I K II+GD GVGK+ L+H++   K+      TIG +F T+ + V G+K+  +Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 145 QERFRAVTRSYYRGAAGALMVIDVSH 170
           QERF+++  ++YRGA   ++V DV++
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTN 87

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 1e-05
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40
          I K II+GD GVGK+ L+H++   KY
Sbjct: 2  ILKVIILGDSGVGKTSLMHRYVNDKY 27

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 2e-13
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K +++GD  VGK+CLL  +T  KF  +   T+  +     + + GE   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
            +  +    Y      L+   V  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVS 86

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 3e-05
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           K +++GD  VGK+CLL  +T  K+
Sbjct: 4  IKCVVVGDGAVGKTCLLISYTTNKF 28

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.2 bits (147), Expect = 5e-13
 Identities = 38/86 (44%), Positives = 54/86 (62%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K  ++GD GVGKS ++ +F E  F P+   TIG  F T+ ++   E  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 147 RFRAVTRSYYRGAAGALMVIDVSHVK 172
           RFRA+   YYRG+A A++V D++  +
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEE 90

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 6e-05
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           K  ++GD GVGKS ++ +F E  +
Sbjct: 5  LKVCLLGDTGVGKSSIMWRFVEDSF 29

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 5e-13
 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           + +++G    GK+ +L++    +       T     G  +  V  + I   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 148 FRAVTRSYYRGAAGALMVIDV 168
            R + R Y++   G + V+D 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDS 77

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 4/24 (16%), Positives = 13/24 (54%)

Query: 17 KYIIIGDMGVGKSCLLHQFTEQKY 40
          + +++G    GK+ +L++    + 
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEI 25

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 1e-12
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  QF    F+     TI  +F  + IEV      L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
           +F ++   Y +   G ++V  +
Sbjct: 63  QFASMRDLYIKNGQGFILVYSL 84

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          +K +++G  GVGKS L  QF    +
Sbjct: 4  YKVVVLGSGGVGKSALTVQFVTGTF 28

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (144), Expect = 1e-12
 Identities = 34/82 (41%), Positives = 55/82 (67%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++G+  VGKS ++ ++ +  F  D   TIGV+F  R I+V+ E ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
           F A+T++YYRGA   ++V   +
Sbjct: 64  FDAITKAYYRGAQACVLVFSTT 85

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 11/101 (10%), Positives = 28/101 (27%)

Query: 17  KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMS 76
           K +++G+  VGKS ++ ++ +  +    + T     L           + +LW    +  
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 77  SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH 117
                   Y      +              +  +       
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV 104

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 2e-12
 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 84  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
           S   K +++G  GVGKS L  QF +  F+ D       +  T+I  V G   +L I DTA
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTA 62

Query: 144 GQERFRAVTRSYYRGAAGALMVIDV 168
           GQE F A+   Y R   G L+V  +
Sbjct: 63  GQEEFGAMREQYMRAGHGFLLVFAI 87

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 9e-07
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          S   K +++G  GVGKS L  QF +  +
Sbjct: 4  SETHKLVVVGGGGVGKSALTIQFIQSYF 31

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 2e-12
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  QF +  F+     TI  +   + +EV  ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
           +F A+   Y +   G  +V  +
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSI 84

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          +K +++G  GVGKS L  QF +  +
Sbjct: 4  YKLVVLGSGGVGKSALTVQFVQGIF 28

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.3 bits (142), Expect = 3e-12
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++GD GVGKS L  QF ++ F+PD   TI   +       + +   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDN-QWAILDVLDTAGQE 63

Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
            F A+   Y R   G L+V  V+ 
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTD 87

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 9e-06
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          +K +++GD GVGKS L  QF ++ +
Sbjct: 5  YKLVVVGDGGVGKSALTIQFFQKIF 29

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 7e-12
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            + +++G    GK+ +L++    + +   P       G  +  V  + +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTV-----GFNVETVTYKNVKFNVWDVGGQD 67

Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
           + R + R YY G  G + V+D + 
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCAD 91

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 4e-04
 Identities = 4/25 (16%), Positives = 13/25 (52%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           + +++G    GK+ +L++    + 
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQS 37

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 1e-11
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           ++ +++G  GVGKS L  QF +  F+ D   TI  +  T+   +     +L I DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
            F A+   Y R   G L+V  V+ 
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTD 88

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 7e-06
 Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQ-DYVCLRLVSTSQPITRKNLLWALVSK 74
           ++ +++G  GVGKS L  QF +  +      T  D    + V   +      L  A   +
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 75  MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
             +  +        ++++  +    S         KF          +    I+  +   
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEI----YKFQRQILRVKDRDEFPMILIGNKAD 121

Query: 135 IKLQIWDTAGQERFRA 150
           +  Q   T  + +  A
Sbjct: 122 LDHQRQVTQEEGQQLA 137

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 1e-11
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K +I+GD   GK+CLL   ++ +F      T+  E     IEV G++++L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 147 RFRAVTRSYYR 157
            +  +    Y 
Sbjct: 62  DYDRLRPLSYP 72

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           K +I+GD   GK+CLL   ++ ++
Sbjct: 3  KKLVIVGDGACGKTCLLIVNSKDQF 27

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 57.7 bits (138), Expect = 2e-11
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            + +I+G  G GK+ +L++    + +   P       G  +  +  + +KL +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPT-----IGFNVETLSYKNLKLNVWDLGGQT 72

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
             R   R YY   A  + V+D 
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDS 94

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 6/25 (24%), Positives = 14/25 (56%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           + +I+G  G GK+ +L++    + 
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEV 42

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-11
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           +K +++G  GVGKS L  Q  +  F+ +   TI   +  +++    E   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62

Query: 147 RFRAVTRSYYRGAAGALMVIDVSHVK 172
            + A+   Y R   G L V  +++ K
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTK 88

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          +K +++G  GVGKS L  Q  +  +
Sbjct: 4  YKLVVVGAGGVGKSALTIQLIQNHF 28

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-11
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K +++GD  VGK+CLL  +T   F  +   T+  +  +  + V G+ + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 147 RFRAVTRSYYRGAAGALMVIDVSHVK 172
            +  +    Y     +L+   +    
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPA 90

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 8e-06
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           K +++GD  VGK+CLL  +T   +
Sbjct: 6  IKCVVVGDGAVGKTCLLISYTTNAF 30

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 56.5 bits (135), Expect = 4e-11
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 86  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
           + K I++G  GVGKS L  QF   +F+ D   T    +  +++    E     I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI-DILDTAGQ 62

Query: 146 ERFRAVTRSYYRGAAGALMVIDVSHVK 172
           E + A+  +Y+R   G L V  ++ ++
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEME 89

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 42.6 bits (99), Expect = 3e-06
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40
          + K I++G  GVGKS L  QF   ++
Sbjct: 4  LHKVIMVGSGGVGKSALTLQFMYDEF 29

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 56.2 bits (134), Expect = 4e-11
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            + +++G    GK+ +L +F  +        TI    G  I  +     KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
             R+  R+Y+    G + V+D +
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSA 80

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 5/25 (20%), Positives = 13/25 (52%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           + +++G    GK+ +L +F  +  
Sbjct: 3  LRLLMLGLDNAGKTTILKKFNGEDV 27

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.8 bits (133), Expect = 1e-10
 Identities = 9/84 (10%), Positives = 25/84 (29%), Gaps = 1/84 (1%)

Query: 90  IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
           + +G    GK+ L  +    ++      +I        +  +       I     +    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 150 AVTRSYYRGAAGALMVIDVSHVKE 173
            +   +   A   + V+D +  + 
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQR 86

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 9e-04
 Identities = 5/22 (22%), Positives = 10/22 (45%)

Query: 19 IIIGDMGVGKSCLLHQFTEQKY 40
          + +G    GK+ L  +    +Y
Sbjct: 4  LFVGLCDSGKTLLFVRLLTGQY 25

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.3 bits (132), Expect = 1e-10
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 7/84 (8%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K +++G    GKS  L Q    + +     T G+       +   + +  ++ D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGI----HEYDFEIKNVPFKMVDVGGQR 55

Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
             R      +      L ++  S 
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSE 79

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 8e-04
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 16 FKYIIIGDMGVGKSCLLHQFT 36
           K +++G    GKS  L Q  
Sbjct: 3  VKILLLGAGESGKSTFLKQMR 23

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (128), Expect = 3e-10
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K + +G    GK+ LLH     +       T+   +     E+    IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 148 FRAVTRSYYRGAAGALMVIDVSHV 171
            R + + Y+    G + ++D +  
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADP 80

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (81), Expect = 9e-04
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 17 KYIIIGDMGVGKSCLLHQFTEQKY 40
          K + +G    GK+ LLH     + 
Sbjct: 2  KLLFLGLDNAGKTTLLHMLKNDRL 25

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 6e-10
 Identities = 24/71 (33%), Positives = 37/71 (52%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           FK +++GD G GK+  + +    +F      T+GVE    +   +   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 147 RFRAVTRSYYR 157
           +F  +   YY 
Sbjct: 64  KFGGLRDGYYI 74

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-05
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          FK +++GD G GK+  + +    ++
Sbjct: 4  FKLVLVGDGGTGKTTFVKRHLTGEF 28

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.0 bits (126), Expect = 9e-10
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 6/84 (7%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K +++G    GKS  + Q            T G+           + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE----YPFDLQSVIFRMVDVGGQR 56

Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
             R      +      + ++ +S 
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSE 80

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQK 39
           K +++G    GKS  + Q     
Sbjct: 3  LKLLLLGTGESGKSTFIKQMRIIH 26

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 1e-09
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 88  KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
           K +++GD   GK+ LLH F +  F  +   T+  E  T   E+  ++I+L +WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 148 FRAVTRSYYRGAAGALMVIDV 168
           +  V    Y  +   L+  D+
Sbjct: 63  YDNVRPLSYPDSDAVLICFDI 83

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 3e-05
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 17 KYIIIGDMGVGKSCLLHQFTEQKY 40
          K +++GD   GK+ LLH F +  +
Sbjct: 4  KIVVVGDSQCGKTALLHVFAKDCF 27

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 6e-09
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K II+G    GK+ +L+QF+  + +   P       G+ + E+     +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-----IGSNVEEIVINNTRFLMWDIGGQE 70

Query: 147 RFRAVTRSYYRGAAGALMVID 167
             R+   +YY      ++V+D
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVD 91

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           K II+G    GK+ +L+QF+  + 
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEV 40

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 1e-08
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K  I G  GVGKS L+ +F  ++F+ +   T+   +  +      E + ++I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDD-EVVSMEILDTAGQE 61

Query: 147 RFRAVTRSYYRGAAGALMVID 167
                   + R   G ++V D
Sbjct: 62  DTI-QREGHMRWGEGFVLVYD 81

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 1e-05
 Identities = 14/102 (13%), Positives = 33/102 (32%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKM 75
            K  I G  GVGKS L+ +F  +++      T +       +    +    +L     + 
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH 117
           +   +    +   ++++ D+    S       +         
Sbjct: 63  TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP 104

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 1e-08
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
           ++  + G  GVGKS L+ +F +  F      T+  +   ++I        LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTGSH 61

Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
           +F A+ R         ++V  ++ 
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITS 85

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
          ++  + G  GVGKS L+ +F +  +
Sbjct: 3  YRVAVFGAGGVGKSSLVLRFVKGTF 27

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 3e-08
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 84  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
           S   K  I+G   VGKS L  QF E +F+     TI   F T++I V+G++  LQ+ DTA
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTA 60

Query: 144 GQERFRAVTRSYYRGAAGALMVIDVSHVK 172
           GQ+ +    ++Y     G ++V  V+ +K
Sbjct: 61  GQDEYSIFPQTYSIDINGYILVYSVTSIK 89

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 9e-05
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          S   K  I+G   VGKS L  QF E ++
Sbjct: 2  SKSRKIAILGYRSVGKSSLTIQFVEGQF 29

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 48.0 bits (113), Expect = 6e-08
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 68  LWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRI 127
           L +++ K+ S+         + +++G    GK+ LL Q   +      P       G  I
Sbjct: 2   LLSILRKLKSAPDQEV----RILLLGLDNAGKTTLLKQLASEDISHITPTQ-----GFNI 52

Query: 128 IEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
             V  +  KL +WD  GQ + R   RSY+      + VID + 
Sbjct: 53  KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD 95

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          +     + +++G    GK+ LL Q   +  
Sbjct: 12 APDQEVRILLLGLDNAGKTTLLKQLASEDI 41

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K +++G    GKS ++ Q              G+           + +  +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIV----ETHFTFKDLHFKMFDVGGQR 53

Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
             R      + G    +  + +S 
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSD 77

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           K +++G    GKS ++ Q      
Sbjct: 3  VKLLLLGAGESGKSTIVKQMKIIHE 27

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 2e-07
 Identities = 10/55 (18%), Positives = 23/55 (41%)

Query: 86  IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW 140
           ++K +++G  GVGKS L   F   +  P+          + +++     + +   
Sbjct: 1   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDI 55

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40
          ++K +++G  GVGKS L   F   + 
Sbjct: 1  VYKVLLLGAPGVGKSALARIFGGVED 26

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 4e-07
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            + +I+G  G GK+ +L++    + +   P       G  +  V  + +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPT-----IGFNVETVTYKNLKFQVWDLGGLT 60

Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
             R   R YY      + V+D 
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDS 82

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 4e-04
 Identities = 6/25 (24%), Positives = 14/25 (56%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
           + +I+G  G GK+ +L++    + 
Sbjct: 6  MRILILGLDGAGKTTILYRLQVGEV 30

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (106), Expect = 6e-07
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 6/73 (8%)

Query: 84  SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
           SY    II G    GK+ LL   T     P    T+  +      +  G  +   + D  
Sbjct: 1   SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFP 54

Query: 144 GQERFRAVTRSYY 156
           G  + R     Y 
Sbjct: 55  GHVKLRYKLSDYL 67

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 10/28 (35%), Positives = 11/28 (39%)

Query: 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
          SY    II G    GK+ LL   T    
Sbjct: 1  SYQPSIIIAGPQNSGKTSLLTLLTTDSV 28

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
            +  ++GD   GKS L+H+F    +          E   + + V G+   + I + A
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSY--QVLEKTESEQYKKEMLVDGQTHLVLIREEA 60

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 7e-05
 Identities = 16/107 (14%), Positives = 32/107 (29%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKM 75
            +  ++GD   GKS L+H+F    Y +  +   +     ++   Q         A     
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 65

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVE 122
             SG          +   +     S L  Q +  +        + + 
Sbjct: 66  KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALV 112

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 4e-06
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 85  YIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGEKIKLQIW 140
             ++ ++IG+ GVGKS L + F      M      +G +   R + V GE   + + 
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 58

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 3e-05
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF 41
            ++ ++IG+ GVGKS L + F      
Sbjct: 2  TYYRVVLIGEQGVGKSTLANIFAGVHDS 29

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 42.4 bits (98), Expect = 5e-06
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
            K + +G    GK+ LLH   + +     P            E+    +    +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-----LHPTSEELTIAGMTFTTFDLGGHI 68

Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
           + R V ++Y     G + ++D +
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCA 91

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 2/123 (1%)

Query: 16  FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKM 75
            K + +G    GK+ LLH   + +    +           ++     T          ++
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV 73

Query: 76  SSSGQYSYSYIFKYIIIGDMGVGKSCL--LHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE 133
             +   + + I   +   D          L      + + + P  I      R   +  E
Sbjct: 74  WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEE 133

Query: 134 KIK 136
           +++
Sbjct: 134 RLR 136

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-05
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 87  FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
            +  ++G    GK+  ++     +F  D   T+G        ++    + +++WD  GQ
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQ 57

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 9e-04
 Identities = 4/37 (10%), Positives = 14/37 (37%)

Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52
           +  ++G    GK+  ++     ++   +  T  +  
Sbjct: 3  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM 39

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 2/69 (2%)

Query: 91  IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV--HGEKIKLQIWDTAGQERF 148
           + G+ G GKS  ++         +     GV   T       H     +  WD  G    
Sbjct: 61  VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 120

Query: 149 RAVTRSYYR 157
                +Y  
Sbjct: 121 NFPPDTYLE 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.91
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.9
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.9
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.89
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.88
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.87
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.87
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.87
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.84
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.82
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.82
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.82
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.81
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.8
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.79
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.77
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.76
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.75
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.75
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.72
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.71
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.69
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.69
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.63
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.56
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.56
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.5
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.49
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.44
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.4
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.37
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.35
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.23
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.15
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.15
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.15
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.12
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.09
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.08
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.07
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.01
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.98
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.97
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.96
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.95
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.94
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.92
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.9
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.89
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.89
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.89
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.88
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.88
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.87
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.87
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.85
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.85
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.83
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.83
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.83
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.82
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.82
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	98.81
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.8
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.8
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.78
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.78
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.78
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.77
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.77
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.77
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.76
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.69
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.68
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.67
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.66
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.66
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.65
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.64
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.59
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.57
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.57
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.55
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.52
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.51
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.51
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.47
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.46
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.46
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.44
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	98.43
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.42
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.4
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.4
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.4
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.35
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.24
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.22
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.18
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.13
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.07
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.94
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	97.93
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.9
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.89
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.87
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.7
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.69
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.66
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.63
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.62
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.57
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.56
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.5
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.4
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.39
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.39
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.3
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.28
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.23
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.17
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.15
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.14
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.13
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.12
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.12
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.12
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.11
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.1
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.1
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.09
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.07
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.05
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.02
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.01
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.0
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.94
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.93
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.93
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.92
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.91
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.89
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.87
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.84
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.84
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.8
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.79
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.78
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.75
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.74
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.74
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.73
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.72
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.7
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.69
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.67
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.67
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.67
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.66
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.65
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.65
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.63
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.61
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.59
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.59
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.58
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.55
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.54
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.54
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.54
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.53
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.52
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.47
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.45
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.44
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.41
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.4
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.39
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.38
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.38
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.37
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.37
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.37
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.35
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.35
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.35
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.34
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.34
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.34
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.34
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.34
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.32
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.31
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.3
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.29
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.28
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.27
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.27
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.26
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.25
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.24
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.24
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.17
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.15
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.15
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.14
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.13
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.08
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.08
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.07
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.05
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.05
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.03
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.0
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.99
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.98
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.98
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.97
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.97
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.96
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.94
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.91
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.89
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.89
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.87
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.86
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.85
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.85
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.83
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.83
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.8
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.8
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.78
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.77
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.76
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.75
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.73
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.72
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.72
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.71
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.69
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.66
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.66
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.64
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.6
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.56
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.52
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.52
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.52
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.52
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.49
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.48
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.47
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.44
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.41
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.41
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.41
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.31
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.24
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.24
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.24
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.23
d1okkd2	207	GTPase domain of the signal recognition particle r	95.23
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.22
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.22
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.22
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.22
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.2
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.18
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.16
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.14
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.12
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.08
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.03
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.02
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.0
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.92
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.88
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.87
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.87
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.87
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.84
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	94.83
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.79
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.76
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.75
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	94.71
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.7
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.68
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	94.67
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.67
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	94.64
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.63
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.63
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.62
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.61
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.6
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.6
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.59
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.59
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.57
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.57
d1vmaa2	213	GTPase domain of the signal recognition particle r	94.56
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.54
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	94.53
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.52
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.51
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.5
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.47
d1j8yf2	211	GTPase domain of the signal sequence recognition p	94.46
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.45
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.43
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	94.35
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.35
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.34
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.33
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.33
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.31
d1okkd2	207	GTPase domain of the signal recognition particle r	94.28
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.26
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.23
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.23
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.22
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.2
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.19
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.16
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.12
d2qy9a2	211	GTPase domain of the signal recognition particle r	94.12
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.11
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.06
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.05
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.03
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.95
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	93.94
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.88
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.86
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.85
d1ls1a2	207	GTPase domain of the signal sequence recognition p	93.82
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.77
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.72
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.71
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.71
d1g2912	240	Maltose transport protein MalK, N-terminal domain	93.7
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.67
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.65
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.58
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.51
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.48
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.47
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.45
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.43
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	93.34
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.31
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.22
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.14
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.11
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.04
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.0
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	92.82
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.81
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.79
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	92.78
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.76
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.74
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.74
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.65
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	92.65
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	92.57
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	92.55
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.51
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	92.4
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	92.37
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	92.33
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.21
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	92.17
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.16
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.1
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.01
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.0
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	91.98
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	91.9
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	91.84
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	91.69
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.69
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	91.64
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.64
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.57
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	91.39
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	91.33
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.15
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	91.03
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	90.93
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	90.82
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	90.76
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	90.71
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	90.7
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	90.69
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.42
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.84
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.81
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.69
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.53
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	89.46
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.43
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.34
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.23
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.08
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	89.06
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.01
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	88.93
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	88.86
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	88.48
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	88.21
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.18
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	87.99
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.74
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	87.71
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	87.69
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	87.26
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.01
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	86.9
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	86.88
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	86.79
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	86.56
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	86.46
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	86.28
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	86.24
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	86.05
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	85.88
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	85.6
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	85.26
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	85.16
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	84.97
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	84.85
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	84.59
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	84.4
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	84.27
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	84.19
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	83.94
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	83.31
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	82.99
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	82.51
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	82.06
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	81.75
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	81.66
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	81.59
d1tuea_	205	Replication protein E1 helicase domain {Human papi	81.57
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	81.46
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	81.33
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	81.28
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.03
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	80.98
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	80.81

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=3.4e-24  Score=149.07  Aligned_cols=91  Identities=42%  Similarity=0.888  Sum_probs=85.7

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      +++.+||+++|++|||||||+++|++++|...+.++.+.+.....+......+.+++|||+|++++..+++.+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            56789999999999999999999999999999999999888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      |+|||+++++|
T Consensus        82 ilv~d~~~~~s   92 (169)
T d3raba_          82 ILMYDITNEES   92 (169)
T ss_dssp             EEEEETTCHHH
T ss_pred             EEEEECccchh
Confidence            99999998753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.7e-24  Score=148.53  Aligned_cols=91  Identities=49%  Similarity=0.965  Sum_probs=86.1

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ++..+||+++|++|||||||+++|++++|...+.++.+.++....+.+++..+.+.+|||+|++.|..+++.++++++++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            67789999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      ++|||+++++|
T Consensus        82 i~v~d~~~~~s   92 (171)
T d2ew1a1          82 ILTYDITCEES   92 (171)
T ss_dssp             EEEEETTCHHH
T ss_pred             EEeeecccchh
Confidence            99999998753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.7e-24  Score=151.07  Aligned_cols=92  Identities=51%  Similarity=1.003  Sum_probs=86.8

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      .++..+||+++|++|||||||+++|+++.+...+.||.+..+....+.+++..+.+.+|||+|+++|..+++.++++|++
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            57889999999999999999999999999999999999998888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCC
Q psy13826        162 ALMVIDVSHVKE  173 (173)
Q Consensus       162 ~ilv~d~t~~~S  173 (173)
                      +|+|||++++++
T Consensus        82 ~i~v~d~t~~~s   93 (194)
T d2bcgy1          82 IIIVYDVTDQES   93 (194)
T ss_dssp             EEEEEETTCHHH
T ss_pred             EEEEEeCcchhh
Confidence            999999998753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.4e-24  Score=146.85  Aligned_cols=91  Identities=88%  Similarity=1.425  Sum_probs=85.8

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      +++.+||+++|+++||||||+++|++++|..++.++.+.++......+++..+.+.+||++|++++..+++.+++++|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            46789999999999999999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      |+|||++|++|
T Consensus        81 ilv~d~~~~~s   91 (166)
T d1z0fa1          81 LMVYDITRRST   91 (166)
T ss_dssp             EEEEETTCHHH
T ss_pred             EEEeccCchHH
Confidence            99999998754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.3e-24  Score=148.03  Aligned_cols=88  Identities=53%  Similarity=1.023  Sum_probs=77.3

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++|+++++...+.||++.++....+.+++..+.+.+||++|++.|..+++.++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            68999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        82 ~d~~~~~s   89 (166)
T d1g16a_          82 YDITDERT   89 (166)
T ss_dssp             EETTCHHH
T ss_pred             EECCCccC
Confidence            99999754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.9e-24  Score=149.60  Aligned_cols=89  Identities=31%  Similarity=0.583  Sum_probs=79.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..|||+++|++|||||||+++|++++|...+.||++.++....+..++..+.+.+||++|++.+..+++.++++++++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            46899999999999999999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||++|++|
T Consensus        82 v~d~~~~~S   90 (170)
T d1i2ma_          82 MFDVTSRVT   90 (170)
T ss_dssp             EEETTSGGG
T ss_pred             ccccccccc
Confidence            999999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.3e-23  Score=144.77  Aligned_cols=88  Identities=38%  Similarity=0.695  Sum_probs=84.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++|++++|...+.||.+.++....+..++..+.+.+||++|++.+..+++.+++.+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            58999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||++|++|
T Consensus        83 ~d~~~~~s   90 (170)
T d1ek0a_          83 YDVTKPQS   90 (170)
T ss_dssp             EETTCHHH
T ss_pred             EeCCcccc
Confidence            99999764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.4e-24  Score=150.35  Aligned_cols=92  Identities=53%  Similarity=1.034  Sum_probs=62.4

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      .+++.+||+++|+++||||||+++|+++++...+.+|++.++....+.+++..+.+.+||++|++.+..+++.+++.+++
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            46788999999999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCC
Q psy13826        162 ALMVIDVSHVKE  173 (173)
Q Consensus       162 ~ilv~d~t~~~S  173 (173)
                      +|+|||+++++|
T Consensus        82 ~i~v~d~~~~~s   93 (173)
T d2fu5c1          82 IMLVYDITNEKS   93 (173)
T ss_dssp             EEEEEETTCHHH
T ss_pred             EEEEEECCChhh
Confidence            999999998754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-23  Score=147.81  Aligned_cols=91  Identities=25%  Similarity=0.433  Sum_probs=83.2

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      +....+||+++|++|||||||++||+++.|..++.||++... ...+..++..+.+.+||++|++.|..++..+++++|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeee-eEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            456789999999999999999999999999999999998654 5667788999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCC
Q psy13826        162 ALMVIDVSHVKE  173 (173)
Q Consensus       162 ~ilv~d~t~~~S  173 (173)
                      +++|||++|++|
T Consensus        84 ~ilv~d~t~~~S   95 (185)
T d2atxa1          84 FLICFSVVNPAS   95 (185)
T ss_dssp             EEEEEETTCHHH
T ss_pred             eeeccccchHHH
Confidence            999999999764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-23  Score=145.92  Aligned_cols=89  Identities=39%  Similarity=0.757  Sum_probs=78.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      +.|||+++|++|||||||++||+++.|.+.+.||.+.+.....+..++..+.+.+||++|++++..+++.+++++|++|+
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            57999999999999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        82 v~d~~~~~S   90 (167)
T d1z08a1          82 VYDITDEDS   90 (167)
T ss_dssp             EEETTCHHH
T ss_pred             EEeCCchhH
Confidence            999999864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.4e-23  Score=143.83  Aligned_cols=87  Identities=29%  Similarity=0.472  Sum_probs=80.2

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      ..||+++|++|||||||+++|+++.|.+.+.||++... .....++++.+.+++||++|++.|..+++.+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-cccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999999999999998554 55677899999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        81 ~d~~~~~S   88 (177)
T d1kmqa_          81 FSIDSPDS   88 (177)
T ss_dssp             EETTCHHH
T ss_pred             cccchhHH
Confidence            99999764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.8e-23  Score=143.73  Aligned_cols=92  Identities=46%  Similarity=0.902  Sum_probs=75.5

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCC-CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA  160 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~  160 (173)
                      -++..|||+++|+++||||||+++|++++|... +.++++.++....+..++..+.+.+|||+|++++..+++.+++++|
T Consensus         2 ~~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d   81 (170)
T d2g6ba1           2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   81 (170)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             CCceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCc
Confidence            367889999999999999999999999998654 4666788888888889999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCCC
Q psy13826        161 GALMVIDVSHVKE  173 (173)
Q Consensus       161 ~~ilv~d~t~~~S  173 (173)
                      ++++|||+++++|
T Consensus        82 ~~i~v~d~~~~~s   94 (170)
T d2g6ba1          82 ALLLLYDVTNKAS   94 (170)
T ss_dssp             EEEEEEETTCHHH
T ss_pred             eeEEEecCCcccc
Confidence            9999999998754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.6e-23  Score=145.13  Aligned_cols=87  Identities=29%  Similarity=0.471  Sum_probs=80.6

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||++||+++.|..++.||++... .....+++..+.+.+||++|+++|..+++.+++.+|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            58999999999999999999999999999999999655 55667889999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||++|++|
T Consensus        82 ~d~~~~~S   89 (191)
T d2ngra_          82 FSVVSPSS   89 (191)
T ss_dssp             EETTCHHH
T ss_pred             cccchHHH
Confidence            99999864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.6e-23  Score=142.65  Aligned_cols=91  Identities=66%  Similarity=1.181  Sum_probs=85.3

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      +++.+||+++|++|||||||+++|.+++|...+.++.+.......+..+...+.+.+||++|++++..+++.+++.++++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            57789999999999999999999999999999999999888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      ++|||+++++|
T Consensus        82 i~v~d~~~~~s   92 (174)
T d2bmea1          82 LLVYDITSRET   92 (174)
T ss_dssp             EEEEETTCHHH
T ss_pred             EEEEecccchh
Confidence            99999998753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1e-22  Score=142.26  Aligned_cols=91  Identities=57%  Similarity=0.977  Sum_probs=82.4

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      +++.+||+++|++|||||||+++|.++.+...+.++.+.......+.+++..+.+.+||++|+++|..++..+++.++++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            46789999999999999999999999999999999888888788888999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      |+|||+++++|
T Consensus        81 i~v~d~~~~~S   91 (175)
T d2f9la1          81 LLVYDIAKHLT   91 (175)
T ss_dssp             EEEEETTCHHH
T ss_pred             EEEEECCCccc
Confidence            99999999764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-22  Score=140.56  Aligned_cols=88  Identities=35%  Similarity=0.528  Sum_probs=81.9

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++|++++|...+.||++.++ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            468999999999999999999999999999999999886 4677899999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        82 v~d~~~~~s   90 (167)
T d1xtqa1          82 VYSVTSIKS   90 (167)
T ss_dssp             EEETTCHHH
T ss_pred             hcccchhhh
Confidence            999999864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1e-22  Score=142.01  Aligned_cols=91  Identities=37%  Similarity=0.564  Sum_probs=82.4

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG  161 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~  161 (173)
                      +....+||+++|++|||||||+++|++++|..++.+|....+ ...+.+++..+.+.+||++|++++..+++.+++++++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccce-eeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            345679999999999999999999999999999998876544 5678889999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCC
Q psy13826        162 ALMVIDVSHVKE  173 (173)
Q Consensus       162 ~ilv~d~t~~~S  173 (173)
                      +|+|||+++++|
T Consensus        81 ~i~v~d~~~~~s   92 (173)
T d2fn4a1          81 FLLVFAINDRQS   92 (173)
T ss_dssp             EEEEEETTCHHH
T ss_pred             eeeecccccccc
Confidence            999999998754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.5e-23  Score=141.72  Aligned_cols=87  Identities=24%  Similarity=0.385  Sum_probs=80.5

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .|||+++|++|||||||+++|++++|.+.+.||++..+ .....+++..+.+.+||++|++.+...+..+++.++++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            58999999999999999999999999999999999766 44667899999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        81 ~d~~~~~s   88 (171)
T d2erxa1          81 YSITSRQS   88 (171)
T ss_dssp             EETTCHHH
T ss_pred             eecccccc
Confidence            99999764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.6e-22  Score=139.68  Aligned_cols=87  Identities=39%  Similarity=0.746  Sum_probs=82.4

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      |||+++|++|||||||++||.+++|..++.++++.+........++..+.+.+||++|++.+...++.+++.++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999999999998888888888999999999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |+++++|
T Consensus        81 d~~~~~s   87 (164)
T d1yzqa1          81 DITNVNS   87 (164)
T ss_dssp             ETTCHHH
T ss_pred             ccccccc
Confidence            9998754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.7e-22  Score=139.66  Aligned_cols=88  Identities=39%  Similarity=0.765  Sum_probs=83.3

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++|++++|..++.||++.+........++..+.+.+||++|++++..+++.++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            47999999999999999999999999999999999888888888999999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||++|++|
T Consensus        82 ~d~~~~~s   89 (164)
T d1z2aa1          82 FSTTDRES   89 (164)
T ss_dssp             EETTCHHH
T ss_pred             Eeccchhh
Confidence            99999764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.8e-22  Score=140.32  Aligned_cols=87  Identities=37%  Similarity=0.593  Sum_probs=81.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .|||+++|+++||||||+++|++++|...+.||.+..+ ...+..++..+.+.+||++|++.+..+++.+++.++++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            58999999999999999999999999999999998766 55677899999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||++|++|
T Consensus        83 ~d~~d~~S   90 (169)
T d1x1ra1          83 YSVTDKAS   90 (169)
T ss_dssp             EETTCHHH
T ss_pred             cccccchh
Confidence            99999764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=3.2e-22  Score=138.62  Aligned_cols=89  Identities=43%  Similarity=0.752  Sum_probs=84.1

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||++||.+++|...+.+|.+..+.......++....+.+||++|++++..+++.+++.++++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999999999999988888889999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        83 v~d~~~~~s   91 (167)
T d1z0ja1          83 VYDITKEET   91 (167)
T ss_dssp             EEETTCHHH
T ss_pred             Eeeechhhh
Confidence            999998764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=2e-22  Score=141.31  Aligned_cols=87  Identities=28%  Similarity=0.521  Sum_probs=80.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||++||++++|+.++.||++..+ ...+.+++..+.+++||++|++.+..+++.+++.+|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecc-cccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999999999999999999999988655 45667889999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||++|++|
T Consensus        81 ~d~~~~~S   88 (179)
T d1m7ba_          81 FDISRPET   88 (179)
T ss_dssp             EETTCHHH
T ss_pred             eecccCCC
Confidence            99999864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.8e-22  Score=140.91  Aligned_cols=89  Identities=27%  Similarity=0.495  Sum_probs=81.7

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      +..+||+++|++|||||||+++|++++|..++.||++... ...+..++..+.+.+||++|++.+..+++.+++.+++++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeece-eeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            4579999999999999999999999999999999998654 456778999999999999999999999999999999999


Q ss_pred             EEEeCCCCCC
Q psy13826        164 MVIDVSHVKE  173 (173)
Q Consensus       164 lv~d~t~~~S  173 (173)
                      +|||+++++|
T Consensus        82 lv~d~~~~~s   91 (183)
T d1mh1a_          82 ICFSLVSPAS   91 (183)
T ss_dssp             EEEETTCHHH
T ss_pred             eeeccchHHH
Confidence            9999998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-22  Score=140.74  Aligned_cols=88  Identities=31%  Similarity=0.505  Sum_probs=81.2

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||++||+.++|.+++.|+++..+ ...+.+++..+.+.+||++|++.+..+++.++++++++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            468999999999999999999999999999999999776 4566789999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||++|++|
T Consensus        81 v~d~~~~~s   89 (167)
T d1c1ya_          81 VYSITAQST   89 (167)
T ss_dssp             EEETTCHHH
T ss_pred             eeeccchhh
Confidence            999999764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.87  E-value=1.8e-22  Score=140.18  Aligned_cols=88  Identities=33%  Similarity=0.606  Sum_probs=78.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++|++++|..++.||++.++ ...+.+++..+.+.+||++|++++..+++.++++++++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            368999999999999999999999999999999999877 4567789999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||++|++|
T Consensus        82 v~d~~~~~s   90 (168)
T d1u8za_          82 VFSITEMES   90 (168)
T ss_dssp             EEETTCHHH
T ss_pred             Eeeccchhh
Confidence            999999754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.7e-22  Score=138.15  Aligned_cols=89  Identities=37%  Similarity=0.693  Sum_probs=84.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..|||+++|++|||||||+++|++++|...+.++.+.++...........+.+.+||++|++.+..+++.++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            46899999999999999999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        85 v~d~~~~~s   93 (170)
T d1r2qa_          85 VYDITNEES   93 (170)
T ss_dssp             EEETTCHHH
T ss_pred             EeccchhhH
Confidence            999998753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.3e-22  Score=139.53  Aligned_cols=86  Identities=28%  Similarity=0.419  Sum_probs=77.1

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++|+++.|.+++.||++.++.. .+..++..+.+++||++|++.+. .++.+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            5899999999999999999999999999999999988754 45678999999999999998774 567789999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||++|++|
T Consensus        80 ~d~~~~~s   87 (168)
T d2atva1          80 YDITDRGS   87 (168)
T ss_dssp             EETTCHHH
T ss_pred             cccCCccc
Confidence            99999764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.6e-22  Score=138.65  Aligned_cols=89  Identities=54%  Similarity=0.906  Sum_probs=83.5

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ...+||+++|++|||||||+++|.++++..++.++.+..+....+.+++..+.+.+||++|++++..+++.+++.+++++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35689999999999999999999999999999999988888888889999999999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +|||+++++
T Consensus        85 ~v~d~~~~~   93 (177)
T d1x3sa1          85 LVYDVTRRD   93 (177)
T ss_dssp             EEEETTCHH
T ss_pred             EEEECCCcc
Confidence            999999865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.6e-22  Score=138.56  Aligned_cols=86  Identities=26%  Similarity=0.359  Sum_probs=63.5

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .|||+++|++|||||||+++|.+.++.. +.++.+..+ ...+.+++..+.+.+||++|++++..+++.+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEEE-EEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeeee-cceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            4899999999999999999999887644 455666554 55678899999999999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        79 ~d~t~~~s   86 (168)
T d2gjsa1          79 YSVTDKGS   86 (168)
T ss_dssp             EETTCHHH
T ss_pred             cccccccc
Confidence            99999764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.2e-22  Score=137.47  Aligned_cols=88  Identities=31%  Similarity=0.488  Sum_probs=80.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||++||++++|...+.|+++..+ .....+++..+.+.+||++|++.+..++..++++++++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeee-eeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            468999999999999999999999999999999998654 5667789999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        81 v~d~~~~~s   89 (167)
T d1kaoa_          81 VYSLVNQQS   89 (167)
T ss_dssp             EEETTCHHH
T ss_pred             eeeecchhh
Confidence            999998754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7e-22  Score=137.36  Aligned_cols=88  Identities=34%  Similarity=0.546  Sum_probs=77.1

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..|||+++|++|||||||+++|++++|..++.||.+... ...+.+++..+.+.+||++|++.+...++.+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE-EEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccce-eeeeeecccccccccccccccccccccccccccccceEEE
Confidence            458999999999999999999999999999999988654 6677889999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        83 v~d~~~~~s   91 (171)
T d2erya1          83 VFSVTDRGS   91 (171)
T ss_dssp             EEETTCHHH
T ss_pred             eeccccccc
Confidence            999999764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.9e-22  Score=141.06  Aligned_cols=90  Identities=40%  Similarity=0.827  Sum_probs=81.0

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECC----------eEEEEEEEeCCCccccccch
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG----------EKIKLQIWDTAGQERFRAVT  152 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------~~~~l~i~D~~g~~~~~~~~  152 (173)
                      ++..+||+++|++|||||||+++|++++|...+.++.+.++....+.+++          ..+.+.+||++|+++|..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            67889999999999999999999999999999999988888777666543          34789999999999999999


Q ss_pred             hhhhcCCCEEEEEEeCCCCC
Q psy13826        153 RSYYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       153 ~~~~~~~~~~ilv~d~t~~~  172 (173)
                      +.++++++++|+|||+++++
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~  101 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQ  101 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHH
T ss_pred             HHHHhcCCEEEEEEeccccc
Confidence            99999999999999999865

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.6e-22  Score=136.96  Aligned_cols=89  Identities=66%  Similarity=1.175  Sum_probs=78.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      +.+||+++|++|||||||+++|+++++...+.++.+.+.........+..+.+.+||++|++.+..+++.+++.+|++|+
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            46899999999999999999999999999999888888878888888999999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||++|++|
T Consensus        82 v~d~~~~~s   90 (173)
T d2a5ja1          82 VYDITRRET   90 (173)
T ss_dssp             EEETTCHHH
T ss_pred             EEeecChHH
Confidence            999999764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.7e-21  Score=132.07  Aligned_cols=88  Identities=33%  Similarity=0.542  Sum_probs=80.5

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..|||+++|+++||||||+++|++++|...+.++++..+.. .+..++..+.+.+||++|++.+...++.+++.++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            35899999999999999999999999999999999987754 45678899999999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        81 v~d~~~~~s   89 (166)
T d1ctqa_          81 VFAINNTKS   89 (166)
T ss_dssp             EEETTCHHH
T ss_pred             eeccccccc
Confidence            999998753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.1e-20  Score=130.16  Aligned_cols=91  Identities=45%  Similarity=0.788  Sum_probs=80.8

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....|||+++|+++||||||+++|++++|..++.+|++..........++..+.+.+||++|+..+...++.++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            35689999999999999999999999999999999999988888888899999999999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      +++||+++++|
T Consensus        83 i~~~d~~~~~s   93 (174)
T d1wmsa_          83 LLTFSVDDSQS   93 (174)
T ss_dssp             EEEEETTCHHH
T ss_pred             EEEEeeecccc
Confidence            99999998753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.3e-20  Score=128.64  Aligned_cols=88  Identities=45%  Similarity=0.886  Sum_probs=80.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCCEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AVTRSYYRGAAGALM  164 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~~il  164 (173)
                      .+||+++|++|||||||+++|++++|...+.++.+.........+......+.+||++|.+.+. ..++.+++++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            6899999999999999999999999999999999988888888899999999999999988765 457889999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||++|++|
T Consensus        82 v~d~~~~~s   90 (165)
T d1z06a1          82 VYDMTNMAS   90 (165)
T ss_dssp             EEETTCHHH
T ss_pred             EEEeehhhh
Confidence            999999864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.3e-20  Score=130.98  Aligned_cols=87  Identities=43%  Similarity=0.780  Sum_probs=82.4

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++|++++|..++.||++.++........+..+.+.+||++|+..+...++.++..++++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      ||+++++
T Consensus        82 ~d~~~~~   88 (184)
T d1vg8a_          82 FDVTAPN   88 (184)
T ss_dssp             EETTCHH
T ss_pred             ecccchh
Confidence            9998864

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-20  Score=130.40  Aligned_cols=82  Identities=20%  Similarity=0.312  Sum_probs=70.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|+++||||||+++|++++|.. +.++.+..+ ...+.++++.+.+.+||++|++++     .|++.+|++|+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~il   76 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIF   76 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeEE
Confidence            36999999999999999999999999865 456666665 566788999999999999998764     47899999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||++|++|
T Consensus        77 Vfd~~~~~S   85 (175)
T d2bmja1          77 VFSLEDENS   85 (175)
T ss_dssp             EEETTCHHH
T ss_pred             Eeecccchh
Confidence            999999764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.81  E-value=2.1e-20  Score=128.98  Aligned_cols=84  Identities=23%  Similarity=0.491  Sum_probs=74.6

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|+++||||||+++|.++++...+.||++.++.  .+..  ..+.+.+||++|++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeee--eeEEEEEeeccccccccccccccccccchhhcc
Confidence            589999999999999999999999999999999987654  3334  346889999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||++++++
T Consensus        78 ~d~~~~~~   85 (164)
T d1zd9a1          78 VDAADQEK   85 (164)
T ss_dssp             EETTCGGG
T ss_pred             cccccccc
Confidence            99998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2e-20  Score=130.12  Aligned_cols=88  Identities=41%  Similarity=0.775  Sum_probs=64.9

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEE-CCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV-HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      .+||+++|++|||||||+++|+++++...+.|+.+.......... +...+.+.+||++|++++...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            589999999999999999999999999999988887665544443 4556789999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||+++++|
T Consensus        82 v~d~~~~~s   90 (175)
T d1ky3a_          82 VYDVTNASS   90 (175)
T ss_dssp             EEETTCHHH
T ss_pred             Eeecccccc
Confidence            999998754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-19  Score=126.42  Aligned_cols=87  Identities=21%  Similarity=0.333  Sum_probs=70.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCC---CccccccchhhhhcCCC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTA---GQERFRAVTRSYYRGAA  160 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~---g~~~~~~~~~~~~~~~~  160 (173)
                      ..|||+++|++|||||||+++|++..+.. ...++.+.+.....+.++++.+.+.+||++   |+++|  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            35899999999999999999999887653 445677777778888899999999999975   45655  5677899999


Q ss_pred             EEEEEEeCCCCCC
Q psy13826        161 GALMVIDVSHVKE  173 (173)
Q Consensus       161 ~~ilv~d~t~~~S  173 (173)
                      ++|+|||+++++|
T Consensus        80 ~~ilvfd~t~~~s   92 (172)
T d2g3ya1          80 AYLIVYSITDRAS   92 (172)
T ss_dssp             EEEEEEETTCHHH
T ss_pred             eeeeeecccccch
Confidence            9999999999764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=2.6e-19  Score=125.90  Aligned_cols=79  Identities=16%  Similarity=0.263  Sum_probs=66.8

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|+.|||||||++||..++++.     .+..    ...++...+.+++||++|+++|..+++.|++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t-----~~~~----~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAG-----TGIV----ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCC-----CSEE----EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCC-----ccEE----EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            6899999999999999999999887754     3321    223444567899999999999999999999999999999


Q ss_pred             EeCCCCCC
Q psy13826        166 IDVSHVKE  173 (173)
Q Consensus       166 ~d~t~~~S  173 (173)
                      ||+++++|
T Consensus        73 ~d~~~~~~   80 (195)
T d1svsa1          73 VALSDYDL   80 (195)
T ss_dssp             EEGGGGGC
T ss_pred             Eeecccch
Confidence            99998764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.76  E-value=6.5e-19  Score=121.27  Aligned_cols=82  Identities=24%  Similarity=0.539  Sum_probs=69.8

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||+++|.++.+ ..+.||.+....  .  ++.+.+.+.+||++|++.+...++.+++.++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~--~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIK--T--LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEE--E--EEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeee--e--ccccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            58999999999999999999998766 457778875443  2  334457899999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      ||++|+.
T Consensus        77 ~d~~d~~   83 (165)
T d1ksha_          77 VDSADRQ   83 (165)
T ss_dssp             EETTCGG
T ss_pred             eecccch
Confidence            9999875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.2e-18  Score=122.87  Aligned_cols=81  Identities=16%  Similarity=0.202  Sum_probs=71.6

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|+.|||||||++||..+.|  .+.||+|.++..    +....+.+++||++|++.+...+..+++.++++++|
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeEe
Confidence            68999999999999999999999887  477999976532    445667899999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      ||+++.+
T Consensus        76 ~~~~~~~   82 (200)
T d2bcjq2          76 VALSEYD   82 (200)
T ss_dssp             EEGGGGG
T ss_pred             eeccchh
Confidence            9998864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.75  E-value=6.4e-19  Score=122.45  Aligned_cols=86  Identities=26%  Similarity=0.459  Sum_probs=70.0

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      .+..+||+++|++|||||||+++|.++++.. ..++.+.+.  ..+..  ..+.+.+||++|++.+...++.+++.+|++
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~--~~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNI--KSVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEE--EEEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeeeeE--EEecc--CCeeEeEeeccccccchhHHHHHhhcccee
Confidence            3456899999999999999999999988753 334555433  23333  447889999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      |+|||++++.|
T Consensus        88 i~v~d~~d~~s   98 (176)
T d1fzqa_          88 IYVIDSADRKR   98 (176)
T ss_dssp             EEEEETTCGGG
T ss_pred             EEeeccccccc
Confidence            99999999764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.72  E-value=1.1e-18  Score=122.03  Aligned_cols=86  Identities=27%  Similarity=0.494  Sum_probs=67.1

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      ....+||+++|++|||||||++++.++++.. ..||.+.....    ...+.+.+.+||++|++.+..+++.+++.++++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVET----LSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEEE----EEETTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEEE----EeeCCEEEEEEecccccccchhHHhhhccceeE
Confidence            3447999999999999999999999887654 44566654432    223457889999999999999999999999999


Q ss_pred             EEEEeCCCCCC
Q psy13826        163 LMVIDVSHVKE  173 (173)
Q Consensus       163 ilv~d~t~~~S  173 (173)
                      ++|||++|++|
T Consensus        89 i~v~d~~d~~s   99 (182)
T d1moza_          89 IFVVDSTDKDR   99 (182)
T ss_dssp             EEEEETTCTTT
T ss_pred             EEEeeeccccc
Confidence            99999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.71  E-value=5.6e-18  Score=117.52  Aligned_cols=84  Identities=24%  Similarity=0.520  Sum_probs=68.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++|+++++.. ..+|.+....    ......+.+.+||++|++.++..++.+++.++++++
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE----TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEEE----EEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeEE----EeeccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            35899999999999999999999887644 3345554332    233345788999999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      |||++++++
T Consensus        86 v~D~s~~~~   94 (173)
T d1e0sa_          86 VVDCADRDR   94 (173)
T ss_dssp             EEETTCGGG
T ss_pred             EEecccchh
Confidence            999998764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=6.7e-18  Score=119.27  Aligned_cols=80  Identities=19%  Similarity=0.263  Sum_probs=62.3

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV  165 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv  165 (173)
                      .+||+++|++|||||||++||.   +...+.||+|....  .  ++.+.+.+++||++|++.+...+..+++.+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~--~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--D--FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--E--EEETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--E--EeeeeeeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999994   56678899996543  2  334566789999999999999999999999999999


Q ss_pred             EeCCCCC
Q psy13826        166 IDVSHVK  172 (173)
Q Consensus       166 ~d~t~~~  172 (173)
                      ||+++..
T Consensus        75 ~~~~~~~   81 (200)
T d1zcba2          75 VSSSEFD   81 (200)
T ss_dssp             EETTCTT
T ss_pred             EEcCCcc
Confidence            9999865

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.69  E-value=2e-17  Score=112.52  Aligned_cols=82  Identities=21%  Similarity=0.470  Sum_probs=69.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI  166 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~  166 (173)
                      +||+++|++|||||||+++|+++++...+..+...     ....+...+.+.+||++|.+.+...+..+++.++++++||
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999999887665544322     2234567788999999999999999999999999999999


Q ss_pred             eCCCCCC
Q psy13826        167 DVSHVKE  173 (173)
Q Consensus       167 d~t~~~S  173 (173)
                      |++++++
T Consensus        76 d~~~~~~   82 (160)
T d1r8sa_          76 DSNDRER   82 (160)
T ss_dssp             ETTCGGG
T ss_pred             EecChHH
Confidence            9998753

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=1.3e-16  Score=114.82  Aligned_cols=82  Identities=20%  Similarity=0.317  Sum_probs=69.3

Q ss_pred             cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826         83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA  162 (173)
Q Consensus        83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~  162 (173)
                      +...+||+++|+.|||||||+++|..+++    .||+|...  ..+.++  .+.+++||++|++.++..|..++++++++
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~--~~~~~~--~~~~~~~D~~Gq~~~r~~w~~~~~~~~~i   74 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE--TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAI   74 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE--EEEEET--TEEEEEEECCCSTTTTTGGGGGCTTCSEE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE--EEEEEC--cEEEEEEecCccceeccchhhhcccccce
Confidence            45679999999999999999999987754    57898654  334444  46789999999999999999999999999


Q ss_pred             EEEEeCCCCC
Q psy13826        163 LMVIDVSHVK  172 (173)
Q Consensus       163 ilv~d~t~~~  172 (173)
                      ++|+|+++.+
T Consensus        75 i~v~d~s~~~   84 (221)
T d1azta2          75 IFVVASSSYN   84 (221)
T ss_dssp             EEEEETTGGG
T ss_pred             EEEEEccccc
Confidence            9999998753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.2e-15  Score=108.41  Aligned_cols=82  Identities=16%  Similarity=0.265  Sum_probs=66.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCCCEEEEEE
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AVTRSYYRGAAGALMVI  166 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~~ilv~  166 (173)
                      +|+++|++|||||||+++|.++++... .||.+.+.....+ .+...+.+.+||++|++.+. ..+..+++.++++++||
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            689999999999999999999988664 4677665543322 24566789999999999885 56788899999999999


Q ss_pred             eCCCC
Q psy13826        167 DVSHV  171 (173)
Q Consensus       167 d~t~~  171 (173)
                      |++|.
T Consensus        80 D~~d~   84 (207)
T d2fh5b1          80 DSAAF   84 (207)
T ss_dssp             ETTTH
T ss_pred             Ecccc
Confidence            99975

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=6.1e-15  Score=100.00  Aligned_cols=80  Identities=21%  Similarity=0.374  Sum_probs=67.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID  167 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d  167 (173)
                      ||+++|++|||||||++++.++++. .+.||.+....    ......+...+||+.|...+...++.+++.+++++++||
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            8999999999999999999998875 46777775443    233344567899999999999999999999999999999


Q ss_pred             CCCCC
Q psy13826        168 VSHVK  172 (173)
Q Consensus       168 ~t~~~  172 (173)
                      .+++.
T Consensus        77 ~~~~~   81 (166)
T d2qtvb1          77 AADPE   81 (166)
T ss_dssp             TTCGG
T ss_pred             ccchh
Confidence            99865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.50  E-value=6.6e-14  Score=95.30  Aligned_cols=84  Identities=25%  Similarity=0.461  Sum_probs=68.1

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||+++|+++++... .++.+....  .  .....+.+.+||.++.+.+......++..++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVE--T--VTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEE--E--EEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceeee--e--eccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            458999999999999999999999998753 446554332  2  22234678899999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      ++|+++..+
T Consensus        79 ~~~~~~~~~   87 (169)
T d1upta_          79 VVDSCDRDR   87 (169)
T ss_dssp             EEETTCCTT
T ss_pred             hhhhhhcch
Confidence            999998754

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.49  E-value=2.7e-14  Score=98.49  Aligned_cols=84  Identities=27%  Similarity=0.485  Sum_probs=63.1

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM  164 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il  164 (173)
                      ..+||+++|++|||||||++++.++++... .++.+...  .....  ..+.+.+||+++++.....+..++..++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~~--~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNV--EEIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSSC--EEEEE--TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceeE--EEEee--cceEEEEeccccccccccchhhhhccceeeee
Confidence            358999999999999999999999887543 23333222  22222  34678899999999999999999999999999


Q ss_pred             EEeCCCCCC
Q psy13826        165 VIDVSHVKE  173 (173)
Q Consensus       165 v~d~t~~~S  173 (173)
                      ++|.++.++
T Consensus        89 v~d~~d~~~   97 (177)
T d1zj6a1          89 VVDSTDRER   97 (177)
T ss_dssp             EEETTCTTT
T ss_pred             ecccccccc
Confidence            999999865

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=1.7e-13  Score=94.91  Aligned_cols=85  Identities=24%  Similarity=0.251  Sum_probs=57.1

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCC--CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch--------hh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT--------RS  154 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--------~~  154 (173)
                      +.-+|+++|.+|||||||++++++.+...  ....+.. ..........+  ..+.+|||+|........        ..
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCccc-ccccceeeeee--eeeeecccccccccccccchhccccccc
Confidence            34479999999999999999999876322  2222222 12222333333  467899999975543222        34


Q ss_pred             hhcCCCEEEEEEeCCCCC
Q psy13826        155 YYRGAAGALMVIDVSHVK  172 (173)
Q Consensus       155 ~~~~~~~~ilv~d~t~~~  172 (173)
                      +++.||++|+|+|++++.
T Consensus        81 ~~~~ad~il~v~D~~~~~   98 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPP   98 (178)
T ss_dssp             HTSSCSEEEEEEETTSCC
T ss_pred             ccccccceeeeechhhhh
Confidence            568899999999998753

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.40  E-value=2.5e-13  Score=93.73  Aligned_cols=84  Identities=19%  Similarity=0.346  Sum_probs=60.5

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL  163 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i  163 (173)
                      ....||+++|++|||||||++++.++.+... .|+.+.+..  .+..++  ..+..||+.++..+...+..+++.+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-eccccccee--EEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            3458999999999999999999999887643 455554432  334444  35779999999999988999999999999


Q ss_pred             EEEeCCCCC
Q psy13826        164 MVIDVSHVK  172 (173)
Q Consensus       164 lv~d~t~~~  172 (173)
                      +++|+++++
T Consensus        86 ~~~d~~d~~   94 (186)
T d1f6ba_          86 FLVDCADHE   94 (186)
T ss_dssp             EEEETTCGG
T ss_pred             eeeeccCcc
Confidence            999999865

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=4.9e-14  Score=95.74  Aligned_cols=84  Identities=26%  Similarity=0.261  Sum_probs=54.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc---------cchhhhh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR---------AVTRSYY  156 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~---------~~~~~~~  156 (173)
                      +||+++|.+|||||||++++++.+... ...+..........+...+  ..+.+|||+|.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            599999999999999999999865322 1111111112222333444  467799999942110         1112236


Q ss_pred             cCCCEEEEEEeCCCCC
Q psy13826        157 RGAAGALMVIDVSHVK  172 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~~  172 (173)
                      ..+|++++|+|.+++.
T Consensus        79 ~~ad~ii~v~d~~~~~   94 (160)
T d1xzpa2          79 EKADIVLFVLDASSPL   94 (160)
T ss_dssp             HHCSEEEEEEETTSCC
T ss_pred             HhCCEEEEEEeCCCCc
Confidence            7899999999999875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=9.5e-13  Score=89.28  Aligned_cols=84  Identities=23%  Similarity=0.254  Sum_probs=58.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc--------chhhhhc
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA--------VTRSYYR  157 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~--------~~~~~~~  157 (173)
                      +||+++|++|||||||++++++.+... ...+....+.....+...+  ..+.+||++|......        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            799999999999999999999876432 2222222222233444444  4577899999654321        1235678


Q ss_pred             CCCEEEEEEeCCCCC
Q psy13826        158 GAAGALMVIDVSHVK  172 (173)
Q Consensus       158 ~~~~~ilv~d~t~~~  172 (173)
                      .+|++++++|.+++.
T Consensus        80 ~~d~~i~~~d~~~~~   94 (161)
T d2gj8a1          80 QADRVLFMVDGTTTD   94 (161)
T ss_dssp             TCSEEEEEEETTTCC
T ss_pred             hccccceeecccccc
Confidence            999999999998865

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=3e-12  Score=90.18  Aligned_cols=79  Identities=20%  Similarity=0.256  Sum_probs=56.5

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhh----hcCCCE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY----YRGAAG  161 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~----~~~~~~  161 (173)
                      ...|+++|++|||||||+++|+++++..    +.........  +......+.+||++|++.+...+..+    ...++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~~--~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSA--ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEEE--TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEEE--EEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            4589999999999999999999987643    3322222222  33444567899999999876655444    345688


Q ss_pred             EEEEEeCCC
Q psy13826        162 ALMVIDVSH  170 (173)
Q Consensus       162 ~ilv~d~t~  170 (173)
                      +++++|..+
T Consensus        77 ~i~~vd~~~   85 (209)
T d1nrjb_          77 LIFMVDSTV   85 (209)
T ss_dssp             EEEEEETTS
T ss_pred             cceEEEEec
Confidence            899998775

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.15  E-value=3e-11  Score=83.37  Aligned_cols=82  Identities=16%  Similarity=0.070  Sum_probs=51.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc----ccc---hhhhhcCCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----RAV---TRSYYRGAA  160 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----~~~---~~~~~~~~~  160 (173)
                      .|+++|.+|||||||++++++........+......... .........+.+|||+|....    ..+   .-..+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec-eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            589999999999999999987654322222222222111 223333446789999995321    111   223567899


Q ss_pred             EEEEEEeCCC
Q psy13826        161 GALMVIDVSH  170 (173)
Q Consensus       161 ~~ilv~d~t~  170 (173)
                      ++++++|...
T Consensus        82 ~~~~~~d~~~   91 (180)
T d1udxa2          82 VLLYVLDAAD   91 (180)
T ss_dssp             EEEEEEETTS
T ss_pred             hhhhhccccc
Confidence            9999999764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.15  E-value=3.8e-11  Score=82.81  Aligned_cols=77  Identities=25%  Similarity=0.227  Sum_probs=49.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc---------------ccch
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF---------------RAVT  152 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~---------------~~~~  152 (173)
                      .|+++|.+|||||||+|++++........|  |.+.....+...    .+.+|||||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~--g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCC--CEeecccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998765332222  212212222222    2568999994211               1112


Q ss_pred             hhhhcCCCEEEEEEeCCC
Q psy13826        153 RSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       153 ~~~~~~~~~~ilv~d~t~  170 (173)
                      ...++.+|++++|+|.+.
T Consensus        76 ~~~~~~~d~~~~vvD~~~   93 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKA   93 (184)
T ss_dssp             HHHGGGCCEEEEEEETTH
T ss_pred             hhcccccchheeeeeccc
Confidence            334678999999999863

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.15  E-value=1.9e-11  Score=84.50  Aligned_cols=87  Identities=18%  Similarity=0.173  Sum_probs=57.1

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCC-----ceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH-----TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA  159 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~-----t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~  159 (173)
                      ..++|+++|.+|+|||||++++++.........     ..+................+.++|++|+..|.......+..+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence            467999999999999999999996432211110     111111111111112234577899999999888888889999


Q ss_pred             CEEEEEEeCCCC
Q psy13826        160 AGALMVIDVSHV  171 (173)
Q Consensus       160 ~~~ilv~d~t~~  171 (173)
                      |++++++|.++.
T Consensus        84 d~~ilv~d~~~g   95 (179)
T d1wb1a4          84 DLALIVVDAKEG   95 (179)
T ss_dssp             CEEEEEEETTTC
T ss_pred             cccccccccccc
Confidence            999999999864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.12  E-value=1.8e-11  Score=87.81  Aligned_cols=82  Identities=21%  Similarity=0.287  Sum_probs=55.2

Q ss_pred             EEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEE----------------ECCeEEEEEEEeCCCccccccch
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIE----------------VHGEKIKLQIWDTAGQERFRAVT  152 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~~~l~i~D~~g~~~~~~~~  152 (173)
                      |+++|.+++|||||++++++..........+..........                +......+.++||||++.|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999986532211111111000011111                12234467899999999998777


Q ss_pred             hhhhcCCCEEEEEEeCCC
Q psy13826        153 RSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       153 ~~~~~~~~~~ilv~d~t~  170 (173)
                      ...+..+|++|+|+|+.+
T Consensus        88 ~~~~~~~D~~ilVvda~~  105 (227)
T d1g7sa4          88 KRGGALADLAILIVDINE  105 (227)
T ss_dssp             CSSSBSCSEEEEEEETTT
T ss_pred             hhcccccceEEEEEeccc
Confidence            778899999999999875

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=2.2e-10  Score=79.15  Aligned_cols=84  Identities=24%  Similarity=0.219  Sum_probs=53.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc------------c
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------------A  150 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------------~  150 (173)
                      ..+||+++|.+|||||||++++++....  .....+... .....+..++.  .+.++|++|.....            .
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRD-PVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccc-cceeeeccCCc--eeeeeccCCccccccccccccccchhH
Confidence            4689999999999999999999986531  222222221 11223344554  46788998864322            2


Q ss_pred             chhhhhcCCCEEEEEEeCCCC
Q psy13826        151 VTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       151 ~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      .....++.+|++++|+|+...
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~  104 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQG  104 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTC
T ss_pred             HHHHHHhcCCEEEEeeccccc
Confidence            233456789999999999764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.08  E-value=7.7e-11  Score=83.18  Aligned_cols=85  Identities=19%  Similarity=0.205  Sum_probs=58.4

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC--------CCCC----CCCC---ceeeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ--------KFMP----DCPH---TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA  150 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~--------~~~~----~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~  150 (173)
                      .++|+++|..++|||||+++++..        ....    ++.+   ..|.+.......+......+.|.||||+..|..
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~   82 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK   82 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHH
Confidence            479999999999999999999632        0000    0000   013333233333333444667889999999987


Q ss_pred             chhhhhcCCCEEEEEEeCCC
Q psy13826        151 VTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       151 ~~~~~~~~~~~~ilv~d~t~  170 (173)
                      ..-..++.+|++|||+|..+
T Consensus        83 ~~~~~~~~aD~avlVvda~~  102 (204)
T d2c78a3          83 NMITGAAQMDGAILVVSAAD  102 (204)
T ss_dssp             HHHHHHTTCSSEEEEEETTT
T ss_pred             HHHHHHHHCCEEEEEEECCC
Confidence            77777899999999999865

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=9.1e-11  Score=80.20  Aligned_cols=81  Identities=25%  Similarity=0.208  Sum_probs=48.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccchhhhh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF---------RAVTRSYY  156 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~---------~~~~~~~~  156 (173)
                      +|+++|++|||||||+++|++....  .....+...   .....++.....+.+||++|....         ......++
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   78 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRD---PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   78 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------C---CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeec---cccccccccccccccccccceeeeecccccccccccccccc
Confidence            6899999999999999999976542  122222111   111223334456789999994221         12223456


Q ss_pred             cCCCEEEEEEeCCCC
Q psy13826        157 RGAAGALMVIDVSHV  171 (173)
Q Consensus       157 ~~~~~~ilv~d~t~~  171 (173)
                      ..+|+++++.|.++.
T Consensus        79 ~~ad~i~~~~~~~~~   93 (171)
T d1mkya1          79 READLVLFVVDGKRG   93 (171)
T ss_dssp             TTCSEEEEEEETTTC
T ss_pred             ccCcEEEEeeccccc
Confidence            789999999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.4e-10  Score=79.01  Aligned_cols=42  Identities=29%  Similarity=0.401  Sum_probs=37.4

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      |.+||+++|++|||||||++||+.++|.+.+.+|.+......
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~   43 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTK   43 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchhee
Confidence            688999999999999999999999999999999977555443

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.01  E-value=1.7e-10  Score=80.91  Aligned_cols=85  Identities=15%  Similarity=0.177  Sum_probs=60.9

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC-----C--CC-------CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ-----K--FM-------PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV  151 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~-----~--~~-------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~  151 (173)
                      .++|+++|..++|||||+++++..     .  +.       ...+...|.+.......+......+.+.|+||+..|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            479999999999999999999741     0  00       001112244444444445445556788899999999877


Q ss_pred             hhhhhcCCCEEEEEEeCCC
Q psy13826        152 TRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       152 ~~~~~~~~~~~ilv~d~t~  170 (173)
                      ....++.+|++|+|+|..+
T Consensus        83 ~~~~~~~aD~allVVda~~  101 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAAND  101 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTT
T ss_pred             HHHHHhhcCeEEEEEEcCC
Confidence            7777889999999999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.4e-10  Score=78.09  Aligned_cols=42  Identities=36%  Similarity=0.720  Sum_probs=37.4

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .|++.+||+++|++|||||||++||+.++|...+.++.+..+
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~   42 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDF   42 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceE
Confidence            378899999999999999999999999999998888866544

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3.4e-10  Score=78.38  Aligned_cols=42  Identities=24%  Similarity=0.382  Sum_probs=36.9

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLR   54 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~   54 (173)
                      ...+||+++|++|||||||++||+.+.|.+.+.+|++.....
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~   48 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV   48 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeE
Confidence            357899999999999999999999999999999997755433

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=2.8e-10  Score=77.59  Aligned_cols=42  Identities=26%  Similarity=0.577  Sum_probs=37.6

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +|++.+||+++|++|||||||++||+.++|...+.++.+...
T Consensus         1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~   42 (169)
T d3raba_           1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF   42 (169)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEE
T ss_pred             CCCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccce
Confidence            478899999999999999999999999999999888876433

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.4e-10  Score=76.42  Aligned_cols=41  Identities=27%  Similarity=0.387  Sum_probs=36.5

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      .+||++||++|||||||++||+.++|.+.+.+|++..+...
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~   43 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ   43 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccccee
Confidence            47999999999999999999999999999999987665443

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.97  E-value=1.3e-10  Score=80.35  Aligned_cols=81  Identities=22%  Similarity=0.214  Sum_probs=49.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCC-CCCC-ceeeeeEEEEEEE-CCeEEEEEEEeCCCcccc----ccchh---hhhc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMP-DCPH-TIGVEFGTRIIEV-HGEKIKLQIWDTAGQERF----RAVTR---SYYR  157 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~-t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~----~~~~~---~~~~  157 (173)
                      +|+++|.+|||||||+|++.+..... .+.+ |.....  ....+ +++  .+.+|||||..+.    ..+..   ..+.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~--~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~l~~~~   78 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDDGR--SFVMADLPGLIEGAHQGVGLGHQFLRHIE   78 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSSSC--EEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeee--ceeEecCCc--EEEEecCCCcccCchHHHHHHHHHHHHHH
Confidence            68999999999999999998765321 2222 222222  22222 233  4679999996321    12222   2345


Q ss_pred             CCCEEEEEEeCCCCC
Q psy13826        158 GAAGALMVIDVSHVK  172 (173)
Q Consensus       158 ~~~~~ilv~d~t~~~  172 (173)
                      .++.++.+.+....+
T Consensus        79 ~~~~i~~~v~~~~~~   93 (185)
T d1lnza2          79 RTRVIVHVIDMSGLE   93 (185)
T ss_dssp             HCCEEEEEEESSCSS
T ss_pred             Hhhhhhheeeecccc
Confidence            688888888776543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.7e-10  Score=77.42  Aligned_cols=41  Identities=68%  Similarity=1.091  Sum_probs=36.0

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      |++.+||+++|+++||||||++||..++|..++.++.....
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~   41 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF   41 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccc
Confidence            57899999999999999999999999999998887755433

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=5.3e-10  Score=76.16  Aligned_cols=40  Identities=28%  Similarity=0.424  Sum_probs=36.1

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLR   54 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~   54 (173)
                      .+||+++|++|||||||++||+.+.|.+++.||++..+..
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~   41 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH   41 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc
Confidence            3799999999999999999999999999999998876543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.7e-10  Score=77.29  Aligned_cols=42  Identities=43%  Similarity=0.778  Sum_probs=37.9

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      |++.+||+++|++|||||||++||+.++|...+.+|.+....
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~   43 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFG   43 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccccee
Confidence            688999999999999999999999999999999988765543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.6e-10  Score=77.62  Aligned_cols=38  Identities=32%  Similarity=0.433  Sum_probs=35.0

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      +||+++|++|||||||+.||+.++|..++.+|++....
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~   41 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA   41 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecc
Confidence            79999999999999999999999999999999876553

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=7.6e-10  Score=75.18  Aligned_cols=39  Identities=28%  Similarity=0.409  Sum_probs=35.2

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      .+||+++|++|||||||++||+.++|...+.+|++..+.
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~   41 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR   41 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeee
Confidence            379999999999999999999999999999999876543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.6e-10  Score=75.14  Aligned_cols=40  Identities=23%  Similarity=0.325  Sum_probs=36.0

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLR   54 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~   54 (173)
                      .|||+++|++|||||||++||+.+.|.+.+.+|++..+..
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~   41 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ   41 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecccc
Confidence            4799999999999999999999999999999998865543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.90  E-value=2.4e-09  Score=74.46  Aligned_cols=88  Identities=16%  Similarity=0.221  Sum_probs=46.3

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc----------cc
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF----------RA  150 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~----------~~  150 (173)
                      .+.....+|+++|.+|||||||++++++.+......+..+.+...........   +.+.|+.+....          ..
T Consensus        18 ~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDE---LHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTT---EEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccccc---ceEEEEEeeccccccccccchhhh
Confidence            33444568999999999999999999987643333333332222222333332   234455542111          11


Q ss_pred             c---hhhhhcCCCEEEEEEeCCCC
Q psy13826        151 V---TRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       151 ~---~~~~~~~~~~~ilv~d~t~~  171 (173)
                      +   ....+..++++++++|.+++
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~  118 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHA  118 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSC
T ss_pred             HHhhhhccccchhhhhhhhhcccc
Confidence            1   11234567999999998754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.89  E-value=1.2e-09  Score=74.39  Aligned_cols=39  Identities=31%  Similarity=0.419  Sum_probs=35.6

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      .+||+++|+++||||||++||+.++|..++.+|++..+.
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~   42 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR   42 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc
Confidence            579999999999999999999999999999999876553

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.89  E-value=2.1e-09  Score=78.28  Aligned_cols=84  Identities=18%  Similarity=0.107  Sum_probs=52.9

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc-------hhh
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-------TRS  154 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~-------~~~  154 (173)
                      ...++|+++|.+|||||||+|.+++.+....  ..++... ........++.  .+.++||||-......       ...
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~-~~~~~~~~~g~--~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR-PVMVSRSRAGF--TLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSS-CEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCccee-EEEEEEEeccE--EEEEEeeecccCCcchHHHHHHHHHH
Confidence            3568999999999999999999998763321  1222221 22233345554  5779999995432111       111


Q ss_pred             --hhcCCCEEEEEEeCCC
Q psy13826        155 --YYRGAAGALMVIDVSH  170 (173)
Q Consensus       155 --~~~~~~~~ilv~d~t~  170 (173)
                        .....+++++|.+++.
T Consensus       107 ~~~~~~~~~il~v~~~~~  124 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDA  124 (257)
T ss_dssp             HTTTCEECEEEEEEESSC
T ss_pred             HHhcCCCCeEEEEEECCC
Confidence              1234688889988764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.6e-09  Score=74.09  Aligned_cols=42  Identities=29%  Similarity=0.341  Sum_probs=36.7

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      +...+||++||++|||||||++||+.++|...+.+|......
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~   44 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT   44 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccccccee
Confidence            346789999999999999999999999999999988765543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=8.1e-10  Score=76.99  Aligned_cols=42  Identities=40%  Similarity=0.748  Sum_probs=38.2

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+++.|||+++|+++||||||++||+.+.|...+.+|.+...
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~   43 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF   43 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeE
Confidence            478999999999999999999999999999999999976544

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.88  E-value=3.9e-09  Score=75.19  Aligned_cols=90  Identities=18%  Similarity=0.270  Sum_probs=58.3

Q ss_pred             CCcceeeEEEEEeCCCCChHHHHHHHHhCC--CCCC-----------------------------CCCceeeeeEEEEEE
Q psy13826         81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPD-----------------------------CPHTIGVEFGTRIIE  129 (173)
Q Consensus        81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~-----------------------------~~~t~~~~~~~~~~~  129 (173)
                      .+....++++++|..++|||||+.+++...  ....                             .....+.+.......
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            344567899999999999999999997321  1000                             000011111111122


Q ss_pred             ECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        130 VHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       130 ~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .......+.+.|+||++.|-.........+|++|+|+|+.+
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~  124 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY  124 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT
T ss_pred             EeccceEEEEEeccchhhhhhhhccccccCceEEEEecccc
Confidence            22223457788999999998777777889999999999865

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=8.7e-10  Score=75.53  Aligned_cols=40  Identities=45%  Similarity=0.744  Sum_probs=33.2

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      +|+.+||++||++|||||||++||..++|...+.++.+..
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~   40 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE   40 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccce
Confidence            5789999999999999999999999999998888776543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.9e-09  Score=74.31  Aligned_cols=41  Identities=27%  Similarity=0.318  Sum_probs=36.6

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLR   54 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~   54 (173)
                      ..+||++||++|||||||++||+.++|...+.+|++.....
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~   44 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA   44 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceee
Confidence            56899999999999999999999999999999998765543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.9e-09  Score=73.12  Aligned_cols=41  Identities=29%  Similarity=0.297  Sum_probs=36.6

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLR   54 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~   54 (173)
                      ..+||+++|++|||||||++||+.++|...+.+|++..+..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~   43 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTK   43 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccce
Confidence            45799999999999999999999999999999998876543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=1.1e-09  Score=74.48  Aligned_cols=41  Identities=27%  Similarity=0.438  Sum_probs=36.0

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      .+||++||++|||||||++||+.++|...+.+|.+......
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~   44 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK   44 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccc
Confidence            57999999999999999999999999999999977655433

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.7e-09  Score=73.76  Aligned_cols=39  Identities=26%  Similarity=0.432  Sum_probs=35.0

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      .|||++||++|||||||++||+.++|...+.+|.+....
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~   43 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT   43 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCccccccee
Confidence            479999999999999999999999999999999775543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=6.7e-10  Score=75.83  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=31.1

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ..|||+++|++|||||||++||+.++|...+.+|++..+.
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~   41 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH   41 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccc
Confidence            3689999999999999999999999999999999876543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.1e-09  Score=74.13  Aligned_cols=40  Identities=28%  Similarity=0.412  Sum_probs=35.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      |||++||++|||||||++||+.++|...+.++.+......
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~   40 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK   40 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccce
Confidence            6999999999999999999999999999999977655433

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.3e-09  Score=75.22  Aligned_cols=42  Identities=31%  Similarity=0.578  Sum_probs=37.2

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .||+.+||+++|++|||||||++||+.++|...+.+|....+
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~   42 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDF   42 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCccccee
Confidence            378999999999999999999999999999998888865443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=1e-09  Score=74.38  Aligned_cols=39  Identities=21%  Similarity=0.386  Sum_probs=35.0

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      .+||+++|++|||||||++||++++|...+.+|++....
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~   40 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL   40 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccc
Confidence            479999999999999999999999999999999875443

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=1.2e-09  Score=74.30  Aligned_cols=38  Identities=21%  Similarity=0.385  Sum_probs=35.0

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||++||++|||||||+.||+.++|...+.+|.+..+
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~   40 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF   40 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccee
Confidence            57999999999999999999999999999999987544

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.7e-09  Score=73.97  Aligned_cols=41  Identities=37%  Similarity=0.510  Sum_probs=33.2

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+..|||+++|+++||||||++||++++|...+.+|++...
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~   43 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF   43 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeee
Confidence            46788999999999999999999999999999999877654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=4.9e-10  Score=76.66  Aligned_cols=42  Identities=38%  Similarity=0.760  Sum_probs=22.3

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .||+.+||+++|+++||||||++||+.++|..++.+|++..+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~   43 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF   43 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceE
Confidence            378999999999999999999999999999999988977544

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.83  E-value=6.8e-09  Score=72.28  Aligned_cols=88  Identities=18%  Similarity=0.164  Sum_probs=58.3

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCC-----CceeeeeEEEEEEE-------------------CCeEEEEEE
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-----HTIGVEFGTRIIEV-------------------HGEKIKLQI  139 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~-----~t~~~~~~~~~~~~-------------------~~~~~~l~i  139 (173)
                      +..++|+++|..++|||||++++.+........     -|....+.......                   ......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            456799999999999999999998643211100     01111111111110                   112356889


Q ss_pred             EeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826        140 WDTAGQERFRAVTRSYYRGAAGALMVIDVSHV  171 (173)
Q Consensus       140 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~  171 (173)
                      .|+||++.|.......+..+|++++|.|..+.
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g  114 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEP  114 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSC
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhh
Confidence            99999999987777778889999999998763

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.6e-09  Score=72.41  Aligned_cols=39  Identities=26%  Similarity=0.374  Sum_probs=35.1

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      .|||+++|+++||||||++||+.++|...+.+|++..+.
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~   41 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR   41 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec
Confidence            379999999999999999999999999999999876553

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.7e-09  Score=73.11  Aligned_cols=39  Identities=26%  Similarity=0.253  Sum_probs=35.2

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ..||+++|++|||||||+.||+.++|...+.+|++....
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~   40 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV   40 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecc
Confidence            469999999999999999999999999999999875543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=4.1e-09  Score=81.32  Aligned_cols=83  Identities=11%  Similarity=0.175  Sum_probs=49.3

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCc---eeeeeEEEEEEECCeEEEEEEEeCCCccccccc-----hhhhh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHT---IGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-----TRSYY  156 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~-----~~~~~  156 (173)
                      ..++|+++|.+|||||||+|.+.+..........   .+.+.....+... ..-.+.+|||||......-     .....
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            4689999999999999999999985432221111   1111111222221 1224679999997543322     22235


Q ss_pred             cCCCEEEEEEeC
Q psy13826        157 RGAAGALMVIDV  168 (173)
Q Consensus       157 ~~~~~~ilv~d~  168 (173)
                      ..+|.+|++.|.
T Consensus       134 ~~~d~~l~~~~~  145 (400)
T d1tq4a_         134 YEYDFFIIISAT  145 (400)
T ss_dssp             GGCSEEEEEESS
T ss_pred             hcceEEEEecCC
Confidence            678888888764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.4e-09  Score=74.24  Aligned_cols=37  Identities=59%  Similarity=0.986  Sum_probs=29.2

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      |.+||+++|++|||||||++||++++|...+.++...
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~   38 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV   38 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCS
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceee
Confidence            6789999999999999999999999998888777543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=3.3e-09  Score=72.96  Aligned_cols=41  Identities=24%  Similarity=0.255  Sum_probs=35.8

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      .+||++||++|||||||+.||+.++|...+.||++......
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~   42 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS   42 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeccccc
Confidence            47999999999999999999999999999999976554433

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.1e-09  Score=73.17  Aligned_cols=41  Identities=27%  Similarity=0.404  Sum_probs=36.5

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      ...|||++||++|||||||+.||++++|...+.+|.+....
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~   44 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFL   44 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccc
Confidence            35689999999999999999999999999999999776553

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.4e-09  Score=72.86  Aligned_cols=41  Identities=37%  Similarity=0.703  Sum_probs=34.1

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCc-ccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGL-QLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~-~~t~~~~~   52 (173)
                      ||+.+||+++|+++||||||++||++++|...+ .++.+...
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~   44 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDF   44 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeee
Confidence            789999999999999999999999999986554 44455444

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=4.3e-09  Score=72.46  Aligned_cols=40  Identities=35%  Similarity=0.564  Sum_probs=35.8

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLR   54 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~   54 (173)
                      .+||+++|++|||||||++||++++|...+.+|++.....
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~   41 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT   41 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeee
Confidence            5899999999999999999999999999999998765433

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.78  E-value=3.3e-09  Score=77.51  Aligned_cols=84  Identities=17%  Similarity=0.186  Sum_probs=56.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCC-------------CCCC---ceeeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-------------DCPH---TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA  150 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~  150 (173)
                      -+|+++|..++|||||+.+++...-..             ++.+   ..+.+.......+..+..++.++||||+..|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            369999999999999999996321100             0000   011122222222222334577899999999988


Q ss_pred             chhhhhcCCCEEEEEEeCCC
Q psy13826        151 VTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       151 ~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .....++.+|++|+|+|..+
T Consensus        83 e~~~al~~~D~avlvvda~~  102 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEA  102 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTT
T ss_pred             hhhhhhcccCceEEEeeccC
Confidence            88888999999999999875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=4.7e-09  Score=71.40  Aligned_cols=41  Identities=32%  Similarity=0.503  Sum_probs=36.0

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      .|||+++|+++||||||+.||++++|...+.+|.+..+...
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~   44 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKH   44 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccc
Confidence            47999999999999999999999999999999987655433

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=4.6e-09  Score=70.92  Aligned_cols=38  Identities=37%  Similarity=0.551  Sum_probs=34.4

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .|||++||++|||||||++||+.++|...+.+|.+...
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~   39 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDF   39 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccccc
Confidence            68999999999999999999999999999988876444

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=3.1e-09  Score=73.61  Aligned_cols=38  Identities=18%  Similarity=0.136  Sum_probs=33.2

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLR   54 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~   54 (173)
                      .+||++||++|||||||+.||+.+.|.  +.||+|.....
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~   39 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP   39 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEE
Confidence            479999999999999999999999884  67999876543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=2.7e-09  Score=72.27  Aligned_cols=39  Identities=44%  Similarity=0.653  Sum_probs=29.1

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      .+||+++|+++||||||++||+.++|...+.+|.+..+.
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~   40 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK   40 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEE
Confidence            589999999999999999999999999999999765443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=4.7e-09  Score=76.93  Aligned_cols=85  Identities=18%  Similarity=0.237  Sum_probs=58.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCC--CCC-----------CCC---CceeeeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQK--FMP-----------DCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR  149 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~--~~~-----------~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~  149 (173)
                      .-+|+++|..++|||||+.+++...  ...           ++.   ...+.++......+..+...+.|.||||+..|.
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence            4479999999999999999997321  100           000   011222222222333344567889999999999


Q ss_pred             cchhhhhcCCCEEEEEEeCCC
Q psy13826        150 AVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       150 ~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      ......++.+|++|+|+|..+
T Consensus        86 ~e~~~~l~~~D~avlVvda~~  106 (276)
T d2bv3a2          86 IEVERSMRVLDGAIVVFDSSQ  106 (276)
T ss_dssp             TTHHHHHHHCCEEEEEEETTT
T ss_pred             HHHHHHHHhhhheEEeccccC
Confidence            888888999999999999875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=9.7e-09  Score=71.21  Aligned_cols=38  Identities=24%  Similarity=0.370  Sum_probs=32.8

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      .+||++||++|||||||++||   +|...+.||+|.....+
T Consensus         2 ~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG~~~~~~   39 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDF   39 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSSEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHH---hcCCCCCCeeeeEEEEE
Confidence            589999999999999999999   47888999999765443

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.68  E-value=1.1e-08  Score=69.08  Aligned_cols=40  Identities=10%  Similarity=0.169  Sum_probs=36.1

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLR   54 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~   54 (173)
                      .+||+++|+++||||||++||..++|..++.||++..+..
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~   41 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK   41 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee
Confidence            4799999999999999999999999999999998876643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=1.1e-08  Score=69.70  Aligned_cols=38  Identities=39%  Similarity=0.633  Sum_probs=31.4

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .+||+++|+++||||||++||+.++|...+.+|.+...
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~   39 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF   39 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccce
Confidence            58999999999999999999999999999888865443

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.66  E-value=9.6e-08  Score=66.83  Aligned_cols=86  Identities=20%  Similarity=0.185  Sum_probs=54.9

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCC---CC--CceeeeeEEEEEEEC------------------------CeEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD---CP--HTIGVEFGTRIIEVH------------------------GEKI  135 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~---~~--~t~~~~~~~~~~~~~------------------------~~~~  135 (173)
                      ..++|+++|..++|||||++++++..-...   ..  .+.........+...                        ....
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            457999999999999999999986321100   00  000000000011010                        1123


Q ss_pred             EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .+.+.|+||+..|....-..+..+|++|+|.|..+
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~  121 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANE  121 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTS
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccc
Confidence            57899999999998766667788999999999876

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.66  E-value=3.1e-08  Score=73.92  Aligned_cols=85  Identities=21%  Similarity=0.244  Sum_probs=46.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCC-CCCC-----CceeeeeEEEEEE----------------ECCeEEEEEEEeCCC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCP-----HTIGVEFGTRIIE----------------VHGEKIKLQIWDTAG  144 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~-----~t~~~~~~~~~~~----------------~~~~~~~l~i~D~~g  144 (173)
                      .||.++|.|+||||||+|.+.+.+.. .+|+     |.+|..+......                .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            48999999999999999999876532 2232     2223222111000                011335789999999


Q ss_pred             cccc----ccchhh---hhcCCCEEEEEEeCCCC
Q psy13826        145 QERF----RAVTRS---YYRGAAGALMVIDVSHV  171 (173)
Q Consensus       145 ~~~~----~~~~~~---~~~~~~~~ilv~d~t~~  171 (173)
                      .-.-    ..+...   .++.+|+++.|+|..+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~~  114 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccccc
Confidence            5321    112222   35689999999998753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=5.5e-08  Score=73.18  Aligned_cols=85  Identities=21%  Similarity=0.386  Sum_probs=57.6

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCC--CCC---------CCC---CceeeeeEEEEEEE----------------CCeEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQK--FMP---------DCP---HTIGVEFGTRIIEV----------------HGEKI  135 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~--~~~---------~~~---~t~~~~~~~~~~~~----------------~~~~~  135 (173)
                      .-+|+++|..++|||||+.+++...  ...         ++.   ...|.+.....+.+                +++.+
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            4469999999999999999997211  100         000   00111111111111                34567


Q ss_pred             EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .+.+.||||+..|.......++-+|++|+|+|..+
T Consensus        97 ~inliDtPGh~dF~~ev~~al~~~D~allVVda~e  131 (341)
T d1n0ua2          97 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE  131 (341)
T ss_dssp             EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT
T ss_pred             EEEEEcCCCcHHHHHHHHHHHhhcCceEEEEeccc
Confidence            89999999999999888888999999999999865

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=3.7e-08  Score=67.04  Aligned_cols=85  Identities=20%  Similarity=0.098  Sum_probs=48.6

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCCCCC-CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc---------cchhh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR---------AVTRS  154 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~---------~~~~~  154 (173)
                      +.-.|+++|.+|||||||+|++++...... ..++............+..  .+..||++|.....         .....
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhcccc
Confidence            445699999999999999999998653211 1221111111222223333  34567887753221         11222


Q ss_pred             hhcCCCEEEEEEeCCCC
Q psy13826        155 YYRGAAGALMVIDVSHV  171 (173)
Q Consensus       155 ~~~~~~~~ilv~d~t~~  171 (173)
                      +...+++++++.|.++.
T Consensus        82 ~~~~~~~~l~~~d~~~~   98 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRW   98 (179)
T ss_dssp             CCCCEEEEEEEEETTCC
T ss_pred             chhhcceeEEEEecCcc
Confidence            34567788888887653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=9.8e-09  Score=70.16  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=27.0

Q ss_pred             CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCC
Q psy13826         79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM  112 (173)
Q Consensus        79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~  112 (173)
                      .+.+.+..++|+++|.+|||||||+|++.+....
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~   42 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSL   42 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC---
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCce
Confidence            3445667899999999999999999999887644

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.57  E-value=1.1e-07  Score=70.25  Aligned_cols=84  Identities=23%  Similarity=0.255  Sum_probs=55.2

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCc-eeeeeEEEEEEECCe---------------EEEEEEEeCCCccc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHT-IGVEFGTRIIEVHGE---------------KIKLQIWDTAGQER  147 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t-~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~  147 (173)
                      .+||.++|.|+||||||++.+.+...  ..+|+-| +..+  ...+.+...               ...+++.|.+|...
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn--~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE--EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT--EEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCC--eEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            47999999999999999999997643  3444422 2211  222333321               24678899998532


Q ss_pred             c----ccchhh---hhcCCCEEEEEEeCCCC
Q psy13826        148 F----RAVTRS---YYRGAAGALMVIDVSHV  171 (173)
Q Consensus       148 ~----~~~~~~---~~~~~~~~ilv~d~t~~  171 (173)
                      -    ..+...   .++.||+++.|+|..+.
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~d  118 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFDD  118 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCCT
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccCC
Confidence            1    222223   46899999999998764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.8e-08  Score=67.83  Aligned_cols=38  Identities=39%  Similarity=0.531  Sum_probs=33.6

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV   51 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~   51 (173)
                      ..+||+++|+++||||||++||..++|...+.++.+..
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~   43 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVD   43 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeec
Confidence            45799999999999999999999999998888876543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.57  E-value=2.5e-08  Score=70.93  Aligned_cols=85  Identities=20%  Similarity=0.291  Sum_probs=56.3

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCC--CCC---------------------------CCCCceeeeeEEEEEEECCeEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQK--FMP---------------------------DCPHTIGVEFGTRIIEVHGEKIK  136 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~~~~  136 (173)
                      .++|+++|.-++|||||+.+++...  ...                           ......|.+..............
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            5799999999999999999885310  000                           00011122222222333344456


Q ss_pred             EEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        137 LQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       137 l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      +.+.||||+..|........+-+|++|+|+|+.+
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~  116 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKK  116 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEeccc
Confidence            8889999999999888888899999999999875

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.55  E-value=6.8e-08  Score=70.77  Aligned_cols=82  Identities=23%  Similarity=0.294  Sum_probs=50.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCCCC-CCC-ceeeeeEEEEEEECCe------------E---EEEEEEeCCCcccc-
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFMPD-CPH-TIGVEFGTRIIEVHGE------------K---IKLQIWDTAGQERF-  148 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~------------~---~~l~i~D~~g~~~~-  148 (173)
                      +||-+||-|+||||||++++........ |+- |+..+..  .+.+...            +   ..+++.|.||.-.- 
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~g--vv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceE--EEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            6999999999999999999997764322 221 2222221  2333221            1   25789999995221 


Q ss_pred             ---ccchh---hhhcCCCEEEEEEeCCC
Q psy13826        149 ---RAVTR---SYYRGAAGALMVIDVSH  170 (173)
Q Consensus       149 ---~~~~~---~~~~~~~~~ilv~d~t~  170 (173)
                         ..+..   ..+++||+++.|.|...
T Consensus        81 ~~g~Glg~~FL~~ir~~d~LihVVr~f~  108 (278)
T d1jala1          81 SKGEGLGNKFLANIRETDAIGHVVRCFE  108 (278)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccCCCccHHHHHHHHhccceEEEeeccC
Confidence               22333   34688999999998643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.52  E-value=6.2e-08  Score=69.80  Aligned_cols=86  Identities=15%  Similarity=0.122  Sum_probs=45.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCC--CCC---------------------------CCCCceeeeeEEEEEEECCeEE
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FMP---------------------------DCPHTIGVEFGTRIIEVHGEKI  135 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~~---------------------------~~~~t~~~~~~~~~~~~~~~~~  135 (173)
                      ..++|+++|..++|||||+.+++...  ...                           ......+...............
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~  102 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  102 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence            35799999999999999999995311  000                           0000111111111111222334


Q ss_pred             EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      .+.+.|+||+..|......-...+|++++|+|+.+
T Consensus       103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~  137 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARR  137 (245)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECST
T ss_pred             eeeeecccccccchhhhhhhhhhhcceeeEEEcCC
Confidence            67889999999998777777889999999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=8e-08  Score=65.96  Aligned_cols=33  Identities=18%  Similarity=0.123  Sum_probs=29.1

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT   47 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t   47 (173)
                      .+||++||+.|||||||++||..++|+..+.++
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~~   34 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVE   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCSEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCccEEE
Confidence            479999999999999999999999887666555

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.51  E-value=4.4e-08  Score=65.57  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=29.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      +||++||++|||||||+++|+.++|.... +|.+...
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~~   41 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNV   41 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCccee-cccceee
Confidence            79999999999999999999999997643 4554433

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=6.5e-08  Score=65.45  Aligned_cols=36  Identities=25%  Similarity=0.298  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      |||+++|++|||||||++||....+... .++.+..+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~~~   37 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY   37 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-CCeeeeee
Confidence            7999999999999999999998877654 34544444

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=4.6e-08  Score=70.23  Aligned_cols=85  Identities=15%  Similarity=0.200  Sum_probs=56.9

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC--CCC------------------CCC---------CCceeeeeEEEEEEECCeEEE
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ--KFM------------------PDC---------PHTIGVEFGTRIIEVHGEKIK  136 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~--~~~------------------~~~---------~~t~~~~~~~~~~~~~~~~~~  136 (173)
                      .++|+++|..++|||||+.+++..  ...                  ..+         ....|.++......+.....+
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~   85 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   85 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence            479999999999999999999631  000                  000         001122222222222233456


Q ss_pred             EEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826        137 LQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH  170 (173)
Q Consensus       137 l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~  170 (173)
                      +.|.|+||+..|..-...-.+.+|++|||.|.++
T Consensus        86 i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~  119 (239)
T d1f60a3          86 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV  119 (239)
T ss_dssp             EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred             EEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCC
Confidence            7888999999998777777889999999999863

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.46  E-value=5.1e-08  Score=64.80  Aligned_cols=32  Identities=13%  Similarity=0.275  Sum_probs=28.0

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT   47 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t   47 (173)
                      +||+++|++|||||||++|++.++|...+..+
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~   32 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI   32 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccce
Confidence            49999999999999999999999987665544

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=6.1e-08  Score=65.89  Aligned_cols=29  Identities=31%  Similarity=0.564  Sum_probs=25.8

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhccccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFL   42 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~   42 (173)
                      ..|||+++|++|||||||++||+.+.+..
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~   30 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSM   30 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTT
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCc
Confidence            36899999999999999999999887753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.3e-07  Score=64.55  Aligned_cols=38  Identities=26%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL   53 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~   53 (173)
                      .+||+++|+++||||||+.||+.++|.... +|....+.
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-~t~~~~~~   42 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTESEQYK   42 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCCC-CSSCEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCcC-CccceeEE
Confidence            479999999999999999999999997644 45444443

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.42  E-value=1.4e-07  Score=63.39  Aligned_cols=40  Identities=18%  Similarity=0.312  Sum_probs=33.0

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      .+||+++|++|||||||+++|..+.+. .+.+|.+.....+
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~~~~   41 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIKTL   41 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeeeeec
Confidence            479999999999999999999988774 5778887665444

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=3.2e-07  Score=60.81  Aligned_cols=38  Identities=29%  Similarity=0.353  Sum_probs=31.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEEE
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRL   55 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~~   55 (173)
                      ||+++|++|||||||++|++.+++. .+.+|.+......
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~~   39 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEEL   39 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEEe
Confidence            8999999999999999999999886 4567766555333

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.40  E-value=6.6e-08  Score=68.50  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=30.4

Q ss_pred             cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      |...+||++||++|||||||++||..+++.    ||+|...
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~~~----pTiG~~~   39 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILHVV----LTSGIFE   39 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHHCC----CCCSCEE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCCcC----CCCCeEE
Confidence            345689999999999999999999877654    6777654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.40  E-value=2.2e-07  Score=67.83  Aligned_cols=60  Identities=23%  Similarity=0.376  Sum_probs=37.3

Q ss_pred             CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc
Q psy13826         82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ  145 (173)
Q Consensus        82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~  145 (173)
                      .....++++++|-||||||||+|++.+..... ..++.|.+.....+..+.   .+.+.||||.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~-~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEE-ECCcccccccceEEECCC---CeEEecCCCc
Confidence            34467899999999999999999999876432 334555555444444433   2678899995

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.35  E-value=1.7e-07  Score=63.53  Aligned_cols=41  Identities=20%  Similarity=0.208  Sum_probs=32.5

Q ss_pred             CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      .++..+||+++|++|||||||++||..++|...+ ++.+...
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~   52 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGFNI   52 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTEEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeeeeE
Confidence            3456789999999999999999999999986543 4555443

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.24  E-value=2.1e-07  Score=63.12  Aligned_cols=31  Identities=23%  Similarity=0.304  Sum_probs=23.5

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGL   44 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~   44 (173)
                      ...||++||++|||||||++|++.+.+...+
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~   42 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV   42 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccee
Confidence            4579999999999999999999999886544

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.22  E-value=2.2e-07  Score=62.97  Aligned_cols=38  Identities=13%  Similarity=0.172  Sum_probs=30.8

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ..+||+++|+++||||||++||+.+.+... .+|.+...
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~~   48 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV   48 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeeeE
Confidence            357999999999999999999999988654 45555544

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.18  E-value=4.9e-07  Score=61.63  Aligned_cols=39  Identities=18%  Similarity=0.272  Sum_probs=31.9

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC   52 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~   52 (173)
                      ...+||+++|++|||||||++|+..+++.. ..+|.+...
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~   53 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNV   53 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEE
Confidence            456899999999999999999999998865 446666544

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.13  E-value=6.3e-07  Score=60.50  Aligned_cols=29  Identities=31%  Similarity=0.381  Sum_probs=26.4

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLG   43 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~   43 (173)
                      .+||+++|++|||||||++|+..+++...
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~~   43 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMNEVVHT   43 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcc
Confidence            47999999999999999999999988754

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=2.5e-05  Score=57.09  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=27.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhCCC-CCCCCCc
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHT  118 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~~~-~~~~~~t  118 (173)
                      ...+|+++|+.++|||||+|.+++..+ +....|+
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~   59 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV   59 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCS
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCcc
Confidence            355899999999999999999999886 4444343

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.94  E-value=2.2e-06  Score=60.47  Aligned_cols=59  Identities=20%  Similarity=0.209  Sum_probs=34.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCCCCC--CCCc--ee--eeeEEEEEEECCeEEEEEEEeCCCccccc
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKFMPD--CPHT--IG--VEFGTRIIEVHGEKIKLQIWDTAGQERFR  149 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~t--~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~~~  149 (173)
                      ..+++|.+|||||||+|++.++.....  .+..  .|  .+.....+.+++.   -.+.||||-..+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            579999999999999999987643221  1111  11  1122334445433   2477999976553

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.93  E-value=1.1e-05  Score=59.31  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=23.9

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKF  111 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~  111 (173)
                      ..+|+++|+.++|||||+|.+++.++
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            35899999999999999999999886

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=7.5e-06  Score=56.65  Aligned_cols=33  Identities=15%  Similarity=0.164  Sum_probs=27.8

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY   50 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~   50 (173)
                      +|+++|+++||||||+++|+.+++...+ +|++.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~   34 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITD   34 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeE
Confidence            6999999999999999999999987654 45443

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=3.7e-06  Score=58.07  Aligned_cols=29  Identities=28%  Similarity=0.236  Sum_probs=25.3

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLG   43 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~   43 (173)
                      ...|+++|+++||||||+++++.+++...
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~   31 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT   31 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCB
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCe
Confidence            34899999999999999999999887543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=4.1e-06  Score=55.51  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      +||+++|+++||||||+++++....
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~   26 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREA   26 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc
Confidence            6999999999999999999997654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.70  E-value=4.6e-06  Score=59.03  Aligned_cols=23  Identities=35%  Similarity=0.585  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      ..+++|.+|||||||+|++.++.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            56899999999999999999764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=6.7e-06  Score=55.47  Aligned_cols=28  Identities=29%  Similarity=0.305  Sum_probs=23.7

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      +..+||+++|.++||||||+++++..+.
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~   41 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTNQKS   41 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            4568999999999999999999987765

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=3.6e-06  Score=55.75  Aligned_cols=25  Identities=32%  Similarity=0.632  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      +||+++|+++||||||+++++..+.
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~   25 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDR   25 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTB
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc
Confidence            5999999999999999999987653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.63  E-value=2e-05  Score=53.38  Aligned_cols=26  Identities=31%  Similarity=0.453  Sum_probs=23.3

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      ..+||+++|+++||||||+++++...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            35899999999999999999999765

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.62  E-value=1.5e-05  Score=53.48  Aligned_cols=23  Identities=43%  Similarity=0.771  Sum_probs=21.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .||+++|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.57  E-value=3e-05  Score=52.22  Aligned_cols=27  Identities=37%  Similarity=0.410  Sum_probs=23.7

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      +.-+|+++|.+|||||||+++++..+.
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~   30 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKV   30 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence            455899999999999999999997754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=2.9e-05  Score=52.04  Aligned_cols=27  Identities=41%  Similarity=0.480  Sum_probs=23.6

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      +.-.|+++|.+|||||||++++++...
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~~~   30 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQKI   30 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCCCc
Confidence            556799999999999999999997654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.50  E-value=2e-05  Score=52.73  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.8

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      =+|++.|++|+|||||+++++..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999863

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=3.9e-05  Score=51.25  Aligned_cols=24  Identities=33%  Similarity=0.592  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhhccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      .|+++|++|||||||+++++....
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~   25 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKK   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            689999999999999999987554

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.39  E-value=5.2e-05  Score=50.35  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=22.8

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      +...+|++.|++||||||+.+.+...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.39  E-value=3.9e-05  Score=50.82  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ..+|++.|++|+||||+++.++..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999753

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.30  E-value=5.7e-05  Score=51.49  Aligned_cols=24  Identities=25%  Similarity=0.444  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhcc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      .+|+++|.+|||||||++++++.+
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCC
Confidence            489999999999999999998754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.28  E-value=7.2e-05  Score=50.25  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYF   41 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~   41 (173)
                      .|+++|.+|||||||+++++..+..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~   26 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR   26 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce
Confidence            5899999999999999999976653

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.23  E-value=9.3e-05  Score=50.21  Aligned_cols=24  Identities=17%  Similarity=0.335  Sum_probs=21.4

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..++|+++|+||+||||.+..++.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999999999874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.17  E-value=0.00011  Score=49.20  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .+|+++|+||+||||++..++..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00011  Score=47.96  Aligned_cols=22  Identities=36%  Similarity=0.668  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .|+++|++||||||+.+.++..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.14  E-value=0.00014  Score=49.61  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=22.5

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ..++|+++|+||+||||+...++..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999999864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00012  Score=48.18  Aligned_cols=20  Identities=25%  Similarity=0.363  Sum_probs=18.6

Q ss_pred             EEEEeCCCCChHHHHHHHHh
Q psy13826         89 YIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~  108 (173)
                      +.++|.+|+|||||+++++.
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999984

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.12  E-value=7.6e-05  Score=50.37  Aligned_cols=24  Identities=33%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhhccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      .|.++|.+|||||||+++++....
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~   26 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKP   26 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCC
Confidence            589999999999999999986543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.12  E-value=8.1e-05  Score=50.04  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhhccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      .|.++|.++||||||+++++....
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~   26 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHP   26 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            489999999999999999986654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.12  E-value=0.00014  Score=48.96  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .+|+++|+||+||||+...++..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998754

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.11  E-value=0.00012  Score=48.77  Aligned_cols=21  Identities=48%  Similarity=0.795  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      ||+++|++|+|||+|+..++.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHh
Confidence            899999999999999988775

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.10  E-value=0.00015  Score=48.87  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .+|+++|+||+||||++..++..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.10  E-value=0.00012  Score=49.55  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=21.1

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      +.+|+++|++|+||||++..++..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999988754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.09  E-value=0.00014  Score=47.18  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=18.5

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      |++.|.+|+||||++++++..
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            678999999999999998643

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.07  E-value=0.00015  Score=47.75  Aligned_cols=21  Identities=48%  Similarity=0.738  Sum_probs=18.9

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      |++.|++|+||||+++++...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999853

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.05  E-value=0.00022  Score=48.36  Aligned_cols=23  Identities=17%  Similarity=0.237  Sum_probs=20.2

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      +.-|+++|+||+||||++++++.
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35679999999999999999975

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0002  Score=47.96  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .||+++|+||+||||.+.+++..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999888643

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.01  E-value=0.00017  Score=47.55  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ||++.|.+|+|||++..++...
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999887653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.0002  Score=48.11  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=20.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .+|+++|+||+||||++..++..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999998753

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.94  E-value=0.00022  Score=48.75  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      =|+++|.|||||||++++++.
T Consensus         4 li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999884

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.93  E-value=0.0002  Score=47.45  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .+|+++|.+||||||+.+.+...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999998888643

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.93  E-value=0.0002  Score=47.59  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhh
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .-+|++.|++|+|||+|+.++..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999998875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00024  Score=47.16  Aligned_cols=22  Identities=36%  Similarity=0.646  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .|++.|++|+|||+|+..++..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            3889999999999999998843

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00029  Score=47.75  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..|+++|+||+||||.+.+++.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00029  Score=48.22  Aligned_cols=22  Identities=27%  Similarity=0.699  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      +++++|++|||||+++..++..
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            6899999999999999888753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.00028  Score=47.80  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=19.4

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      |+|+|++||||+||+++++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.84  E-value=0.00047  Score=48.81  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      +--|++.|+||+|||+|+..+++.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            335899999999999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.84  E-value=0.00039  Score=46.68  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .++|.++|.+++|||||+++++..
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHh
Confidence            468999999999999999999853

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.80  E-value=0.00032  Score=46.32  Aligned_cols=22  Identities=36%  Similarity=0.600  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      +|+++|.+|+||||+.+.++..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988643

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.79  E-value=0.00033  Score=49.02  Aligned_cols=22  Identities=36%  Similarity=0.446  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ..+++|.||||||||++.+..+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTT
T ss_pred             eEEEECCCCCCHHHHHHhhcch
Confidence            5799999999999999999754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.00059  Score=45.65  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=21.0

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ...=|+++|.+|+||||++.+++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999998653

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.75  E-value=0.00039  Score=46.72  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=18.9

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      |+++|++||||+|+++.+...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00092  Score=48.24  Aligned_cols=60  Identities=23%  Similarity=0.184  Sum_probs=40.6

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCCCCC-----CCCceeeeeEEEEEEECCeEEEEEEEeCCCcc
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPD-----CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE  146 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~  146 (173)
                      ..=|.++|+.++|||+|+|++++..+.-.     .+.|.|+-.+...+ .++....+.++||.|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEeccccc
Confidence            45678999999999999999998763221     23466754433322 23445567788999853

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00042  Score=49.84  Aligned_cols=22  Identities=23%  Similarity=0.560  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      +++++|++|||||++++.++..
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            7899999999999998888753

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.73  E-value=0.00048  Score=45.45  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=18.6

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      |++.|++|+||||+.+.+...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999988754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00044  Score=45.51  Aligned_cols=21  Identities=33%  Similarity=0.675  Sum_probs=18.3

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      +++.|.+|+||||+.+.+...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567999999999999998753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.70  E-value=0.00045  Score=46.94  Aligned_cols=21  Identities=33%  Similarity=0.620  Sum_probs=18.9

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      |+|+|++||||+||+++++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.69  E-value=0.00068  Score=44.66  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .+-|.|.|.+|+||||+.+.+..
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46688999999999999888763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.67  E-value=0.00047  Score=48.26  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -.+++.|+||+|||++++.++..
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00043  Score=47.37  Aligned_cols=24  Identities=25%  Similarity=0.602  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhhccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      .+++||++|||||+++..+...-.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHH
Confidence            589999999999999987775433

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00048  Score=46.38  Aligned_cols=21  Identities=19%  Similarity=0.575  Sum_probs=19.3

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      |+++|++|+||+||+++++..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999853

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.66  E-value=0.0005  Score=45.65  Aligned_cols=20  Identities=20%  Similarity=0.313  Sum_probs=17.6

Q ss_pred             EEEEeCCCCChHHHHHHHHh
Q psy13826         89 YIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~  108 (173)
                      |++.|.+||||||+++.+..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999998853

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.0005  Score=46.62  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -|+++|+||+||||++..++..
T Consensus        10 iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999863

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.65  E-value=0.00049  Score=47.94  Aligned_cols=20  Identities=30%  Similarity=0.629  Sum_probs=18.5

Q ss_pred             EEEEeCCCCChHHHHHHHHh
Q psy13826         89 YIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~  108 (173)
                      |+++|.+|+|||||++++..
T Consensus         3 i~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHH
Confidence            68999999999999999974

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.63  E-value=0.0005  Score=48.03  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .+++.|+||+|||++++.++..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            5899999999999999999854

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00064  Score=50.26  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=21.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..+.|.+.|+||||||||++++..
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHH
Confidence            468999999999999999999973

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.59  E-value=0.00071  Score=48.21  Aligned_cols=26  Identities=23%  Similarity=0.491  Sum_probs=23.1

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      ..++|+++|.+|+||||+++.++...
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCC
Confidence            45799999999999999999998654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00059  Score=47.05  Aligned_cols=21  Identities=33%  Similarity=0.635  Sum_probs=19.1

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      ++++|++||||+||+++++..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999999864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.58  E-value=0.00062  Score=44.92  Aligned_cols=19  Identities=21%  Similarity=0.482  Sum_probs=17.3

Q ss_pred             EEEeCCCCChHHHHHHHHh
Q psy13826         90 IIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        90 ~l~G~~~vGKssl~~~~~~  108 (173)
                      .++|.+|+|||||+.+++.
T Consensus         5 ~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           5 QVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEECCTTSSHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHH
Confidence            4999999999999999874

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00055  Score=49.19  Aligned_cols=24  Identities=21%  Similarity=0.469  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhhccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      .+++||++|||||+++..+...-.
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHHH
Confidence            589999999999999988775533

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.54  E-value=0.00065  Score=45.06  Aligned_cols=20  Identities=15%  Similarity=0.434  Sum_probs=18.2

Q ss_pred             EEEEeCCCCChHHHHHHHHh
Q psy13826         89 YIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~  108 (173)
                      |+++|.+||||||+.+.++.
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.00058  Score=46.14  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=19.0

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      |+|+|++|+||++|+.++...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999988754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00055  Score=46.09  Aligned_cols=22  Identities=18%  Similarity=0.551  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -|+++|++|+||++|+.+++..
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999998853

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.53  E-value=0.0007  Score=45.88  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -|+++|+||+||||++.+++..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.52  E-value=0.00071  Score=44.49  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=17.8

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      |+|.|.+|+||||+++.+...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            455699999999999998864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.47  E-value=0.00023  Score=50.01  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ..+++|.||||||||++.+..+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            5789999999999999998854

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.0017  Score=45.43  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .-.+++.|++|+|||++++.++..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999874

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.44  E-value=0.00079  Score=47.60  Aligned_cols=22  Identities=32%  Similarity=0.345  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      +++++|++|+|||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.41  E-value=0.00094  Score=45.25  Aligned_cols=26  Identities=23%  Similarity=0.468  Sum_probs=22.5

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhhhc
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ...++|+++|++|+|||++..++...
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            45679999999999999999888863

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.40  E-value=0.00083  Score=49.14  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -.++++||||||||.|++.++..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            45899999999999999999864

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.39  E-value=0.0036  Score=44.02  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      -+.++|++|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999998753

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.38  E-value=0.00091  Score=47.63  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      +++++|++|+|||||++.+++-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999998763

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.00094  Score=46.91  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|++|+|||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999998865

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.0011  Score=45.58  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      =++++|++||||++|+.+++..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3788899999999999998865

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.00087  Score=43.31  Aligned_cols=22  Identities=36%  Similarity=0.668  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .|+++|++|+|||++...+...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999988877653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.37  E-value=0.00083  Score=47.12  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -+.++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4789999999999999987764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.35  E-value=0.00098  Score=47.02  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      -++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            36789999999999999998753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.35  E-value=0.00083  Score=47.58  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ...|++.|+||+|||++++.+++.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            457999999999999999999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.35  E-value=0.001  Score=43.73  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .+|++.|.+|+|||++...+..
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHH
Confidence            4899999999999999887765

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.34  E-value=0.00089  Score=45.95  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|+.|+|||||++.+++-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            4789999999999999999874

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00091  Score=44.14  Aligned_cols=21  Identities=38%  Similarity=0.667  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      |++.|++|+|||+|+..+...
T Consensus         4 v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999888744

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.0009  Score=45.34  Aligned_cols=21  Identities=33%  Similarity=0.620  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      |||+|++|+|||+|+.++...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999887643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0033  Score=44.23  Aligned_cols=22  Identities=36%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -+.++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999998774

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.34  E-value=0.00092  Score=43.69  Aligned_cols=22  Identities=45%  Similarity=0.673  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -|++.|++|+|||+++.++...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999888753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.32  E-value=0.0011  Score=46.76  Aligned_cols=21  Identities=19%  Similarity=0.257  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      -+++.|++|+|||||+.+++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999999875

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.31  E-value=0.001  Score=47.05  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      +++++|++|+|||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999998764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0012  Score=47.67  Aligned_cols=22  Identities=32%  Similarity=0.461  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++++|+.|+|||||++.+++-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5889999999999999999864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.29  E-value=0.00089  Score=44.87  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=18.2

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      |+++|++|+|||+|+.++...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            788899999999999887654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.28  E-value=0.0011  Score=43.59  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=16.4

Q ss_pred             EEEEcCCCCchhhhhHHhhh
Q psy13826         18 YIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~   37 (173)
                      |+|.|.+|+|||++...+..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            44559999999999987765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0011  Score=47.12  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      +++++|++|+|||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6899999999999999998764

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.27  E-value=0.0016  Score=49.34  Aligned_cols=25  Identities=20%  Similarity=0.493  Sum_probs=22.3

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      .++|+++|.+|||||||++.+....
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            5799999999999999999998643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.26  E-value=0.0011  Score=42.62  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      |++.|.+|+|||+++.++...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            778999999999999988754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.25  E-value=0.0013  Score=43.69  Aligned_cols=21  Identities=43%  Similarity=0.520  Sum_probs=17.4

Q ss_pred             EEE-EEeCCCCChHHHHHHHHh
Q psy13826         88 KYI-IIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~-l~G~~~vGKssl~~~~~~  108 (173)
                      |++ +.|.+||||||+++.+..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            554 579999999999998863

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.00049  Score=46.22  Aligned_cols=23  Identities=22%  Similarity=0.241  Sum_probs=20.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..-|+|.|.+|+||||+.+.+..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999974

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.24  E-value=0.0012  Score=46.49  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      -+.++|++|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999988753

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.17  E-value=0.0016  Score=44.76  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=20.7

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .+.|++-|++||||||.+..++..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            467888899999999999998853

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.15  E-value=0.0014  Score=46.04  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -.+++.|++|+|||++++.++..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.15  E-value=0.0014  Score=45.44  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .+++.|++|+|||++++.++..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999998753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0014  Score=42.83  Aligned_cols=22  Identities=23%  Similarity=0.296  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      =++++|.+|+|||+|+.++...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999999853

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.13  E-value=0.0017  Score=47.84  Aligned_cols=24  Identities=29%  Similarity=0.342  Sum_probs=21.8

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ..+.|-+.|+||+|||||+.+++.
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            468999999999999999999984

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.08  E-value=0.0011  Score=49.97  Aligned_cols=20  Identities=30%  Similarity=0.715  Sum_probs=16.8

Q ss_pred             EEEEEeCCCCChHHHHHHHH
Q psy13826         88 KYIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~  107 (173)
                      ++++||+||||||+++..++
T Consensus        45 n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHH
Confidence            46999999999999886554

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.08  E-value=0.0016  Score=43.78  Aligned_cols=22  Identities=18%  Similarity=0.465  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      ++|+++|++|+|||++..++..
T Consensus         4 ~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999987764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.07  E-value=0.0016  Score=43.36  Aligned_cols=22  Identities=23%  Similarity=0.520  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      +|+++|++|+|||++..++...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999887643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.05  E-value=0.002  Score=46.20  Aligned_cols=26  Identities=31%  Similarity=0.526  Sum_probs=23.3

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      ..++++++|-++||||||++++...+
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            45799999999999999999998754

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.05  E-value=0.0024  Score=42.92  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ..|+++|++|+|||+++.++...
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36789999999999999888753

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.03  E-value=0.0018  Score=42.99  Aligned_cols=21  Identities=19%  Similarity=0.412  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      +|+++|++|+|||++...+..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999877654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.00  E-value=0.0011  Score=46.50  Aligned_cols=23  Identities=26%  Similarity=0.556  Sum_probs=20.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      -++++|++|+|||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37899999999999999999853

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.99  E-value=0.0014  Score=43.14  Aligned_cols=20  Identities=30%  Similarity=0.507  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCchhhhhHHhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~   36 (173)
                      +|+++|.+|+|||++...+.
T Consensus         3 ~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            68999999999999876654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.98  E-value=0.0021  Score=42.97  Aligned_cols=23  Identities=26%  Similarity=0.226  Sum_probs=20.1

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .+=|.+-|++|+|||||++++..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45588999999999999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.98  E-value=0.0017  Score=47.46  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      ||.++|-++||||+|++.++..+
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC
Confidence            89999999999999999998654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.002  Score=44.49  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .+++.|++|+|||++++.++.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            489999999999999998764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.97  E-value=0.0017  Score=45.81  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=18.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -+++.|+||+|||++++.++..
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3455699999999999998853

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.96  E-value=0.002  Score=45.59  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=20.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .+++.|++|+|||++++.++..
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            5899999999999999999964

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.94  E-value=0.0061  Score=40.00  Aligned_cols=34  Identities=21%  Similarity=0.173  Sum_probs=24.6

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCcee
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIG  120 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~  120 (173)
                      .=|++-|+-|+|||+|++.++..--.  ...+||-.
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~   69 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYT   69 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTT
T ss_pred             eEEEEecCCCccHHHHHHHHHhhcccccccCCCceE
Confidence            35888999999999999999865322  23455543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0021  Score=42.88  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .+|+++|++|+|||++...+...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999887653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.89  E-value=0.0019  Score=45.35  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -+++.|++|+|||+|+.++...
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            3778899999999999988753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.89  E-value=0.0012  Score=47.02  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      +++++|++|+|||||++-+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            789999999999999988765

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.87  E-value=0.0024  Score=42.60  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ||+++|++|+|||++..++...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999877753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0023  Score=42.51  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      ||+++|++|+|||++..++..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999977764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.85  E-value=0.0015  Score=49.24  Aligned_cols=20  Identities=30%  Similarity=0.715  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCchhhhhHHhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~   36 (173)
                      .+++||++|||||+|+..+.
T Consensus        45 n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHH
Confidence            37999999999999885554

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.85  E-value=0.0017  Score=43.62  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .+|+++|++|+|||+++.++..
T Consensus         4 m~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999977654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.83  E-value=0.0041  Score=43.75  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -+.++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999999874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.83  E-value=0.0025  Score=44.10  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=19.0

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      +++.|++|+|||++++.++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            899999999999999998754

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.80  E-value=0.003  Score=45.70  Aligned_cols=34  Identities=24%  Similarity=0.213  Sum_probs=26.4

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhccc--ccCcccc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQKY--FLGLQLT   47 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~--~~~~~~t   47 (173)
                      ..+||-+||-++||||+|++..+....  ..+|+.|
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypft   44 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYA   44 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCcc
Confidence            347999999999999999999996532  4555433

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.002  Score=44.98  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .+++.|++|+|||++++.++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.0026  Score=43.86  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .+++.|++|+|||++++.++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999999864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.77  E-value=0.0023  Score=45.10  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      |++.|++|+|||+|+..+...
T Consensus        35 ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          35 FLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999888764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0017  Score=45.47  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -+.++|+.|+|||||++.+++-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999873

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.75  E-value=0.0024  Score=44.94  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -+.++|+.|+|||||++.+++-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3689999999999999999875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0028  Score=45.00  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -.+++.|+||+|||++++.++..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            45899999999999999999863

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.72  E-value=0.0028  Score=44.97  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=20.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -.+++.|+||+|||++++.++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            46999999999999999999874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.0029  Score=43.17  Aligned_cols=21  Identities=33%  Similarity=0.450  Sum_probs=18.1

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      |++.|+||+||+|+...++..
T Consensus         6 I~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567799999999999988754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.71  E-value=0.0026  Score=44.29  Aligned_cols=22  Identities=27%  Similarity=0.620  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -+++.|++|+|||++++-+.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999877754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.69  E-value=0.0026  Score=44.14  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -+++.|++|+|||++++.+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHhc
Confidence            3889999999999999877754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.66  E-value=0.0026  Score=48.78  Aligned_cols=21  Identities=29%  Similarity=0.643  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      +|+++||+|||||-|+++++.
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999985

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.66  E-value=0.0028  Score=42.85  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .-|+++|-+|+|||+++.++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999988874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.003  Score=41.21  Aligned_cols=22  Identities=32%  Similarity=0.613  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      =+++.|.+|+|||++...+...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4667899999999999887653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.60  E-value=0.003  Score=45.00  Aligned_cols=22  Identities=36%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -+.++|++|+|||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999999764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0039  Score=41.84  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .+|+++|++|+|||++..++..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999987775

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.52  E-value=0.0033  Score=43.45  Aligned_cols=21  Identities=29%  Similarity=0.566  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      =|+++|.+|+|||+|+.++..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            378999999999999999975

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.52  E-value=0.0047  Score=42.24  Aligned_cols=22  Identities=23%  Similarity=0.296  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      ++|.+-|++|+|||++..++..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3778889999999998887764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.52  E-value=0.0032  Score=45.89  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ++++|++|||||.|+....+.
T Consensus        52 iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          52 ILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhc
Confidence            789999999999999888764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.52  E-value=0.0035  Score=41.64  Aligned_cols=22  Identities=23%  Similarity=0.319  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .-|+++|.+|+|||+++.++..
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.49  E-value=0.0045  Score=43.46  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      -+.++|+.|+|||||++.+++-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36799999999999999998753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.48  E-value=0.0035  Score=44.48  Aligned_cols=21  Identities=43%  Similarity=0.577  Sum_probs=19.4

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      +.++|+.|+|||||++.+++-
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            689999999999999999875

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.47  E-value=0.0071  Score=41.68  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             ceeeEEEEEeCCCCChHHHHHHHH
Q psy13826         84 SYIFKYIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        84 ~~~~ki~l~G~~~vGKssl~~~~~  107 (173)
                      ..+.-|+++|+.||||||.+-+++
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345678999999999999776665

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0052  Score=41.89  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.0

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ++-|.+-|.+|+||||+.+.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46688999999999999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.41  E-value=0.0042  Score=40.59  Aligned_cols=20  Identities=25%  Similarity=0.514  Sum_probs=16.7

Q ss_pred             EEEEcCCCCchhhhhHHhhh
Q psy13826         18 YIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~   37 (173)
                      |++.|.+|+|||++...+..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66889999999998876654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.41  E-value=0.0057  Score=44.87  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++.|+.|+||||+++.++..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46999999999999999999864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.41  E-value=0.0038  Score=43.69  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -+++.|++|+|||+++..+...
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999877754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.31  E-value=0.0046  Score=40.70  Aligned_cols=21  Identities=14%  Similarity=0.404  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .|+++|.+|+|||++...+..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999998877753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.0042  Score=44.24  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -.|++.|++|+|||+|++.++..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            45999999999999999999875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.24  E-value=0.0049  Score=40.52  Aligned_cols=21  Identities=19%  Similarity=0.271  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -|++.|.+|+|||+++.++..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367789999999999987754

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.0055  Score=42.20  Aligned_cols=22  Identities=27%  Similarity=0.605  Sum_probs=18.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .=|+++|++||||||.+-+++.
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999998888763

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.0054  Score=45.10  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ..+.|.+.|++|+|||+|+.++...
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~   77 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGML   77 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999853

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.23  E-value=0.0055  Score=42.09  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=17.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      -++++|++||||||.+-+++.
T Consensus         8 vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           8 VVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            468899999999998777653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.0048  Score=43.05  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -+++.|++|+|||+++..+++.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988865

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.22  E-value=0.0069  Score=41.69  Aligned_cols=23  Identities=17%  Similarity=0.403  Sum_probs=14.5

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHH
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~  107 (173)
                      .+.-++++|++||||||.+-+++
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34457889999999999877766

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.22  E-value=0.0051  Score=40.21  Aligned_cols=22  Identities=36%  Similarity=0.600  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .|+++|.+|+|||++...+...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999988776543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0054  Score=41.15  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      =+.+.|++|+|||+|+..++.+.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999999999998643

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.20  E-value=0.0052  Score=40.13  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=17.5

Q ss_pred             eEEEEEcCCCCchhhhhHHhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~   36 (173)
                      +-|+++|.+|+|||++...+.
T Consensus         7 ~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458899999999999876655

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.18  E-value=0.0059  Score=41.93  Aligned_cols=19  Identities=21%  Similarity=0.524  Sum_probs=16.6

Q ss_pred             EEEEeCCCCChHHHHHHHH
Q psy13826         89 YIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~  107 (173)
                      ++++|++||||||.+-+++
T Consensus        13 i~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5789999999999887776

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.16  E-value=0.0058  Score=43.72  Aligned_cols=25  Identities=40%  Similarity=0.514  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      +||-+||-++||||+|++..+...-
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~   27 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGI   27 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCC
Confidence            5999999999999999999996653

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.14  E-value=0.0069  Score=40.57  Aligned_cols=25  Identities=32%  Similarity=0.618  Sum_probs=21.5

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ..+=|++-|..||||||+++.+...
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4467999999999999999998753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.12  E-value=0.0037  Score=45.85  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .++++|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            689999999999999999864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.08  E-value=0.0059  Score=39.91  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=18.6

Q ss_pred             EE-EEEcCCCCchhhhhHHhhhc
Q psy13826         17 KY-IIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~-~~~g~~~vgkt~l~~~~~~~   38 (173)
                      || .++|.+|+|||+|+.++...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            44 59999999999999988753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.03  E-value=0.0068  Score=42.00  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      =+++.|++|+|||+|..+|+.+
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999999854

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=0.0089  Score=40.07  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      --|+++|++|+|||++..++..
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999988875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.00  E-value=0.0061  Score=42.90  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .-|++.|++|+|||+++......
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            35999999999999999887753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.92  E-value=0.0066  Score=41.85  Aligned_cols=24  Identities=21%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhhccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      -+++.|++|+|||+++..+.+.-+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHH
Confidence            389999999999999988876543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.88  E-value=0.0078  Score=41.20  Aligned_cols=23  Identities=22%  Similarity=0.177  Sum_probs=19.7

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHH
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~  107 (173)
                      ...=|.+.|.||+|||||.+.+.
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34568999999999999998886

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.87  E-value=0.0035  Score=44.14  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=16.7

Q ss_pred             EEEcCCCCchhhhhHHhhhc
Q psy13826         19 IIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        19 ~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ++.|++|+|||++++.+.+.
T Consensus        50 ~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHHH
Confidence            44599999999999887754

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.0056  Score=42.61  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .+++.|++|+|||++++.+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999888765

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.0076  Score=41.41  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      =+++.|++|+|||+|+..++.+.
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47889999999999999998653

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.84  E-value=0.0072  Score=40.56  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -|+++|++|+|||++..++...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999988763

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.0077  Score=42.30  Aligned_cols=21  Identities=33%  Similarity=0.403  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      ++.++|++|.|||+|+.-+..
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            599999999999998876554

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.79  E-value=0.008  Score=44.78  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      -+++.|+||+|||++++.+++
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998874

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.76  E-value=0.0078  Score=42.23  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .++++|++|+|||+|++-...
T Consensus        26 ~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            377999999999999876665

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.75  E-value=0.011  Score=39.36  Aligned_cols=24  Identities=33%  Similarity=0.476  Sum_probs=21.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKF  111 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~  111 (173)
                      -|++.|++|+|||+++-.++....
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCC
Confidence            588999999999999999987653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.71  E-value=0.0084  Score=42.41  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      ++.++|++|+|||+|+.-++.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            599999999999999875553

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.70  E-value=0.0093  Score=41.19  Aligned_cols=22  Identities=32%  Similarity=0.593  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      =+++.|+||+|||+|+.+++.+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999999865

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0089  Score=42.23  Aligned_cols=21  Identities=24%  Similarity=0.373  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      ++.++|++|+|||+|+.-+..
T Consensus        42 ~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            599999999999999875543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.67  E-value=0.0089  Score=42.00  Aligned_cols=21  Identities=24%  Similarity=0.338  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      ++.++|++|+|||+|+.-+..
T Consensus        30 ~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999998876553

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.64  E-value=0.0087  Score=39.41  Aligned_cols=21  Identities=48%  Similarity=0.654  Sum_probs=16.9

Q ss_pred             EE-EEEcCCCCchhhhhHHhhh
Q psy13826         17 KY-IIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~-~~~g~~~vgkt~l~~~~~~   37 (173)
                      |+ ++.|.+|+|||+++..+..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            55 4579999999999987753

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.63  E-value=0.0083  Score=44.73  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .-.++++|+.|||||-|+++++.
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            34699999999999999999874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.63  E-value=0.0095  Score=43.61  Aligned_cols=21  Identities=33%  Similarity=0.517  Sum_probs=17.8

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      +++.|+||+|||.|++.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            345799999999999999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.62  E-value=0.0085  Score=41.78  Aligned_cols=21  Identities=33%  Similarity=0.396  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -+.++|++|+|||+|++-+..
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            389999999999999874443

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.61  E-value=0.0083  Score=44.72  Aligned_cols=21  Identities=24%  Similarity=0.588  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -++++|++|||||-|..++..
T Consensus        70 niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeeeCCCCccHHHHHHHHHh
Confidence            389999999999999988764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.0095  Score=43.44  Aligned_cols=21  Identities=29%  Similarity=0.599  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .++++|++|||||.|+..++.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            588999999999999999875

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.60  E-value=0.0098  Score=42.45  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -|.+.|.+|+|||+|+..+.+.
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5789999999999999998754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.59  E-value=0.0082  Score=45.94  Aligned_cols=21  Identities=29%  Similarity=0.643  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .|++|||+|||||-|+.++.+
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998875

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.008  Score=41.37  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=18.9

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      +++.|++|+|||++++.++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            789999999999999888865

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.57  E-value=0.0089  Score=40.71  Aligned_cols=20  Identities=30%  Similarity=0.503  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchhhhhHHhhh
Q psy13826         18 YIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~   37 (173)
                      +.++|++|+|||+|+.-.+.
T Consensus        30 ~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          30 VNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             EEEECCTTSSHHHHHHHHTT
T ss_pred             EEEECCCCChHHHHHHHHhc
Confidence            78999999999999987765

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.57  E-value=0.017  Score=38.39  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=21.2

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhCCC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQKF  111 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~~~  111 (173)
                      ++=|.+.|.+|+||||+++.|....+
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~g~   28 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSWGY   28 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHCCC
Confidence            45678999999999999998865433

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.012  Score=40.48  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=20.0

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhh
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      ..+-++++|+.|||||+.+-++..
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            445789999999999998877764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.54  E-value=0.011  Score=39.88  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=18.3

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      -|++-|..||||||++..+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999987764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.53  E-value=0.0095  Score=40.85  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      +++.|++|+|||++++.+...
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHH
Confidence            789999999999999877754

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.52  E-value=0.01  Score=42.60  Aligned_cols=21  Identities=33%  Similarity=0.456  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      ++.++|++|+|||+|+.-++.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            589999999999999876654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.51  E-value=0.011  Score=40.51  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      =+++.|++|+|||+|+..++.+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36889999999999999998543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.0098  Score=41.51  Aligned_cols=21  Identities=33%  Similarity=0.537  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -+.++|++|+|||+|++-+..
T Consensus        28 i~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            489999999999999875544

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.47  E-value=0.028  Score=40.12  Aligned_cols=33  Identities=21%  Similarity=0.445  Sum_probs=26.9

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhccc-ccCcccc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQKY-FLGLQLT   47 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~~~-~~~~~~t   47 (173)
                      ..+|+++|+.+.|||||++.++...+ +....++
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~   59 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV   59 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCcc
Confidence            34899999999999999999998886 4444444

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=94.46  E-value=0.0087  Score=41.17  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=14.5

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .-++++|+.|||||+.+-++..
T Consensus        13 ~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          13 YVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             EEEEEECSCCC----HHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578899999999999877774

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.45  E-value=0.015  Score=38.78  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQKF  111 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~~  111 (173)
                      -+++.|++|+|||+++-.+.....
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcCC
Confidence            578999999999999999987643

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.43  E-value=0.012  Score=43.14  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=22.2

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhhc
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      ..+.|-+.|.+|+|||+|+.++...
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999864

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.35  E-value=0.011  Score=40.56  Aligned_cols=23  Identities=22%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             EEEEcCCCCchhhhhHHhhhccc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      +++.|++|+|||+++..+++.-+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            78999999999999999987644

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.35  E-value=0.0093  Score=42.24  Aligned_cols=20  Identities=30%  Similarity=0.448  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCchhhhhHHhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~   36 (173)
                      ++.++|++|+|||+|+.-+.
T Consensus        46 ~vaivG~sGsGKSTLl~ll~   65 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIP   65 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            59999999999999986444

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.34  E-value=0.011  Score=41.40  Aligned_cols=21  Identities=24%  Similarity=0.483  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .+.++|++|+|||+|++-+..
T Consensus        34 ~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            489999999999999976554

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.014  Score=39.65  Aligned_cols=20  Identities=30%  Similarity=0.365  Sum_probs=17.6

Q ss_pred             EEEEeCCCCChHHHHHHHHh
Q psy13826         89 YIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~  108 (173)
                      |++-|..|+||||+++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999988764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.33  E-value=0.011  Score=41.57  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -+++.|++|+|||+++..+.+.
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            4899999999999999988864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.019  Score=41.69  Aligned_cols=29  Identities=21%  Similarity=0.234  Sum_probs=22.9

Q ss_pred             CCCcceeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      +.....++=|.|-|.+||||||+.+.+..
T Consensus        74 ~~~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          74 TNGQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            34445678899999999999999888754

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=94.28  E-value=0.012  Score=40.36  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -++++|+.|||||+.+-++..
T Consensus         8 vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           8 VVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999888764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.26  E-value=0.018  Score=38.11  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=21.4

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKF  111 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~  111 (173)
                      .-+++.|++|+|||++.-.++....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999999887643

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.0062  Score=40.48  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -|++.|.+|+|||++...+..
T Consensus        21 vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            577899999999999887754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.23  E-value=0.014  Score=38.90  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.1

Q ss_pred             EEEEcCCCCchhhhhHHhhhccc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      |++.|++|+|||+++..+...-+
T Consensus        17 vl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          17 VLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEeCCCCCHHHHHHHHHHcCC
Confidence            88999999999999999886544

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.22  E-value=0.011  Score=40.97  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      =+++.|++|+|||++..+|..+-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47889999999999999998543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.20  E-value=0.014  Score=40.06  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=19.2

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      +++.|++|+|||-|++.+++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.014  Score=40.26  Aligned_cols=22  Identities=23%  Similarity=0.302  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      =+++.|++|+|||+|+..|+.+
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999854

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.16  E-value=0.013  Score=40.51  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      .|.++|.+++|||+|+++++...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc
Confidence            49999999999999999998653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.013  Score=41.16  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -+.++|++|+|||+|++-...
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            389999999999999875554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.013  Score=40.33  Aligned_cols=22  Identities=27%  Similarity=0.605  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .-++++|+.|||||+.+-++..
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3578899999999999988864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.013  Score=39.14  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      =+++.|++|+|||+|+.+++.+-
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            37888999999999999998653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.06  E-value=0.015  Score=38.49  Aligned_cols=24  Identities=29%  Similarity=0.428  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchhhhhHHhhhccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      =|++.|++|+|||++...+...-+
T Consensus        17 gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCC
Confidence            389999999999999988886643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.05  E-value=0.015  Score=38.81  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.1

Q ss_pred             EEEEcCCCCchhhhhHHhhhccc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      |++.|++|+|||++...+...-+
T Consensus        18 vli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          18 VLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEcCCCCCHHHHHHHHHHcCC
Confidence            88999999999999999886543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.03  E-value=0.044  Score=37.30  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      =+++.|++|+|||.|+.+|..+
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3788899999999999999755

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.95  E-value=0.018  Score=41.44  Aligned_cols=25  Identities=20%  Similarity=0.509  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      .+|+++|+.+.|||||++.++...+
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            4899999999999999999998876

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.015  Score=41.15  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -+++.|++|+|||.++..+...
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHHH
Confidence            4899999999999999888753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.88  E-value=0.015  Score=40.99  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -+++.|++|+|||.++..+...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            5899999999999999877764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.86  E-value=0.018  Score=39.12  Aligned_cols=20  Identities=30%  Similarity=0.501  Sum_probs=17.4

Q ss_pred             EEEEEeCCCCChHHHHHHHH
Q psy13826         88 KYIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~  107 (173)
                      -+++.|++|+|||+|+..++
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47788999999999998775

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.85  E-value=0.018  Score=39.98  Aligned_cols=21  Identities=29%  Similarity=0.637  Sum_probs=18.2

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      -+++.|++|+|||++++.++.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999998764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=93.82  E-value=0.016  Score=39.65  Aligned_cols=20  Identities=20%  Similarity=0.451  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhhhhHHhhh
Q psy13826         18 YIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~   37 (173)
                      ++++|+.|||||+.+-++..
T Consensus        13 i~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            57799999999998877764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.019  Score=39.01  Aligned_cols=21  Identities=19%  Similarity=0.369  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      -+++.|++|+|||+++..++.
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999998775

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.021  Score=38.93  Aligned_cols=20  Identities=25%  Similarity=0.298  Sum_probs=16.4

Q ss_pred             EEEEeCCCCChHHHHHHHHh
Q psy13826         89 YIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~  108 (173)
                      |++-|..|+||||++..+..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999997777653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.71  E-value=0.015  Score=40.06  Aligned_cols=22  Identities=32%  Similarity=0.593  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      =+++.|++|+|||.|+.++..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4788899999999999999876

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=93.70  E-value=0.018  Score=40.35  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .+.++|++|+|||+|++-...
T Consensus        31 ~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            489999999999999876553

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.67  E-value=0.012  Score=40.88  Aligned_cols=20  Identities=30%  Similarity=0.707  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhhHHhhh
Q psy13826         18 YIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~   37 (173)
                      +.++|++|+|||+|++-...
T Consensus        29 ~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhc
Confidence            89999999999999876664

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.017  Score=41.98  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -++++|++|||||.|+..+..-
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhh
Confidence            4789999999999999887653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.58  E-value=0.016  Score=41.34  Aligned_cols=19  Identities=32%  Similarity=0.541  Sum_probs=16.6

Q ss_pred             EEEEeCCCCChHHHHHHHH
Q psy13826         89 YIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~  107 (173)
                      -+++|+.|+|||+++..+.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            3799999999999998773

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.012  Score=40.45  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .|++-|..||||||+++.+..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998875

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.47  E-value=0.013  Score=42.84  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -|+++|++|+|||.|+.++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            489999999999999998863

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.45  E-value=0.02  Score=39.17  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhhccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      =+++.|++|+|||.++.+++.+-.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            378889999999999999986543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.43  E-value=0.028  Score=38.17  Aligned_cols=22  Identities=27%  Similarity=0.308  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCchhhhhHHhh
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~   36 (173)
                      .+.|+++|..+.|||+|+.++.
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHH
Confidence            4689999999999999999986

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.34  E-value=0.028  Score=37.08  Aligned_cols=23  Identities=26%  Similarity=0.226  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhh
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .+-|.+-|++|+|||+|+.++..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45677999999999999988864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.31  E-value=0.027  Score=38.78  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=18.8

Q ss_pred             EEEEeCCCCChHHHHHHHHhC
Q psy13826         89 YIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~~  109 (173)
                      .++-|--|+|||||+++++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            577899999999999999975

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.22  E-value=0.051  Score=37.23  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      =+++.|++|+|||++..+|+.+.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47889999999999999998643

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.14  E-value=0.021  Score=39.05  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=18.5

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      +++.|++|+|||.|++-.+..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999877765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.016  Score=40.36  Aligned_cols=20  Identities=35%  Similarity=0.596  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchhhhhHHhhh
Q psy13826         18 YIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~   37 (173)
                      +.++|++|+|||+|++....
T Consensus        28 ~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            89999999999999987764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.04  E-value=0.025  Score=36.97  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      -|++-|+-|+|||++++.+++.-
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEecCCCccHHHHHHHHHhhc
Confidence            47788999999999999888653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.00  E-value=0.026  Score=40.16  Aligned_cols=21  Identities=29%  Similarity=0.354  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -|++.|.+|+|||+|+....+
T Consensus        46 ~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          46 FLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999988764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.034  Score=38.24  Aligned_cols=21  Identities=33%  Similarity=0.594  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      -|++=|..||||||+++.+..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.81  E-value=0.028  Score=39.27  Aligned_cols=20  Identities=30%  Similarity=0.498  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchhhhhHHhhh
Q psy13826         18 YIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~   37 (173)
                      +.++|++|+|||+|++-...
T Consensus        35 ~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            88999999999999986664

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.79  E-value=0.04  Score=40.34  Aligned_cols=25  Identities=20%  Similarity=0.468  Sum_probs=22.3

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ..++|++=|.-|+||||+++.+...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=92.78  E-value=0.0045  Score=41.12  Aligned_cols=19  Identities=32%  Similarity=0.504  Sum_probs=16.5

Q ss_pred             EEEEeCCCCChHHHHHHHH
Q psy13826         89 YIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~  107 (173)
                      .+|+|+.|+||||++..+.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3577999999999999885

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.76  E-value=0.034  Score=38.98  Aligned_cols=20  Identities=30%  Similarity=0.356  Sum_probs=17.3

Q ss_pred             EEEEeCCCCChHHHHHHHHh
Q psy13826         89 YIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~  108 (173)
                      .++.|++|+|||+|+..++-
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            66899999999999988763

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.74  E-value=0.016  Score=40.70  Aligned_cols=21  Identities=24%  Similarity=0.578  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .+.++|++|+|||+|++-...
T Consensus        33 ~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            489999999999999876654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.74  E-value=0.042  Score=40.24  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=22.3

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      ..++|++=|.-||||||+++.+...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            5689999999999999999998753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.65  E-value=0.034  Score=39.10  Aligned_cols=20  Identities=25%  Similarity=0.425  Sum_probs=17.4

Q ss_pred             EEEEeCCCCChHHHHHHHHh
Q psy13826         89 YIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~  108 (173)
                      +++.|++|+|||+|+..++.
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67899999999999887764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.028  Score=37.93  Aligned_cols=30  Identities=27%  Similarity=0.242  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT   47 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t   47 (173)
                      =|++.|++|+||+++..++.. +|...+-+|
T Consensus         5 iI~I~GppGSGKgT~ak~La~-~~gl~~iSt   34 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE-ALQWHLLDS   34 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH-HHTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-HhCCcEECH
Confidence            356669999999998876664 354444433

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=92.57  E-value=0.045  Score=36.53  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .+.|.++|..+.|||+|+.+++..
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~   28 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGV   28 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhh
Confidence            468999999999999999999753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.55  E-value=0.032  Score=37.79  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -+++.|++|+|||.|+.+++.+
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~~   49 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLYN   49 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4788899999999999887643

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.51  E-value=0.027  Score=39.86  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -|++.|++|+|||+++..+...
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcchhHHHHHHHH
Confidence            4899999999999999887754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=92.40  E-value=0.059  Score=36.41  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhCCC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQKF  111 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~~~  111 (173)
                      |-|.+.|..|+||||.++.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            4477999999999999998876544

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=92.37  E-value=0.034  Score=38.76  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      +.++|++|+|||+|++-...-
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            779999999999999866654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.33  E-value=0.035  Score=39.22  Aligned_cols=21  Identities=38%  Similarity=0.452  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .+.++|++|+|||+|++-...
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            489999999999998876653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.21  E-value=0.07  Score=35.90  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=19.5

Q ss_pred             eEEEEEeCCCCChHHHHHHHHhC
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      +-|.+.|..|+||||+++.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            45789999999999999988644

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.17  E-value=0.037  Score=38.92  Aligned_cols=21  Identities=43%  Similarity=0.577  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      +.++|++|+|||+|++-...-
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEECCCCCcHHHHHHHHHCC
Confidence            899999999999999866643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.16  E-value=0.047  Score=37.16  Aligned_cols=20  Identities=20%  Similarity=0.174  Sum_probs=17.8

Q ss_pred             EEEEeCCCCChHHHHHHHHh
Q psy13826         89 YIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~  108 (173)
                      |++-|..||||||+++.+..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999988764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.10  E-value=0.05  Score=38.99  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      |+.++|++|+|||+|+..++.+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999988864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.01  E-value=0.033  Score=37.82  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.0

Q ss_pred             eEEEEEeCCCCChHHHHHHHHh
Q psy13826         87 FKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        87 ~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      =-+++.|+++.|||.|+..++.
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999987764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.98  E-value=0.047  Score=36.20  Aligned_cols=23  Identities=35%  Similarity=0.720  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhh
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .+-|++-|..|+|||+++..+.+
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999987764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.90  E-value=0.027  Score=40.46  Aligned_cols=20  Identities=30%  Similarity=0.587  Sum_probs=14.9

Q ss_pred             EEEEeCCCCChHHHHHHHHh
Q psy13826         89 YIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~~  108 (173)
                      |.+-|.+|+||||+.+.|..
T Consensus         7 IgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEESCC---CCTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            88999999999999998753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=91.84  E-value=0.043  Score=40.00  Aligned_cols=21  Identities=33%  Similarity=0.517  Sum_probs=17.1

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      +++.|++|+|||.|+..+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            445699999999999887754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=91.69  E-value=0.047  Score=39.94  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      ...+|+|=|.-||||||+++.+..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999999864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.69  E-value=0.04  Score=39.98  Aligned_cols=22  Identities=27%  Similarity=0.628  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -++++|++|||||.+++.++..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            4678899999999999988753

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.64  E-value=0.046  Score=40.49  Aligned_cols=19  Identities=37%  Similarity=0.564  Sum_probs=16.5

Q ss_pred             EEEEeCCCCChHHHHHHHH
Q psy13826         89 YIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~  107 (173)
                      -+++|+.|+|||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3588999999999999874

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.64  E-value=0.046  Score=39.23  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhhccc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      |+.++|++|+|||+|+.....+.-
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHHHh
Confidence            899999999999999988886543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.57  E-value=0.069  Score=35.92  Aligned_cols=23  Identities=26%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhh
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .+.|+++|..+.|||+|+.++..
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHH
Confidence            46899999999999999998874

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.39  E-value=0.088  Score=37.63  Aligned_cols=23  Identities=26%  Similarity=0.190  Sum_probs=19.1

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHH
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~  107 (173)
                      .++=|.+-|.+|+|||||...+.
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHH
Confidence            45778899999999999887664

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.066  Score=36.02  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      +-|.+-|.+|+|||++..++..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5678999999999999987764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.15  E-value=0.056  Score=37.77  Aligned_cols=20  Identities=30%  Similarity=0.356  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchhhhhHHhhh
Q psy13826         18 YIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .++.|++|+|||+|+.+++.
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67899999999999988764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.03  E-value=0.061  Score=37.09  Aligned_cols=22  Identities=27%  Similarity=0.593  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -+++.|++|+|||+++..+...
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3788899999999998877653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=90.93  E-value=0.055  Score=37.95  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -+++.|++|+|||+++.++..+
T Consensus        37 l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            3788899999999999888754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=90.82  E-value=0.12  Score=35.47  Aligned_cols=24  Identities=21%  Similarity=0.522  Sum_probs=21.5

Q ss_pred             ceeeEEEEEcCCCCchhhhhHHhh
Q psy13826         13 SYIFKYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        13 ~~~~k~~~~g~~~vgkt~l~~~~~   36 (173)
                      .-.++++++|....|||+|+.++.
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHH
Confidence            356789999999999999999996

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=90.76  E-value=0.064  Score=39.70  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -+++.|++|+|||+++..++.
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            488999999999998876653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=90.71  E-value=0.07  Score=36.19  Aligned_cols=21  Identities=24%  Similarity=0.268  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      =|++.|-||+|||+|...+..
T Consensus        26 vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          26 TIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999877764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=90.70  E-value=0.081  Score=35.55  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhh
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .+.|+++|....|||+|+.+++.
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CeEEEEEEccCCcHHHHHHHHHh
Confidence            46899999988899999999975

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.69  E-value=0.07  Score=36.09  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      -+++.|++|+|||+++..+...
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            5899999999999999887764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.42  E-value=0.093  Score=36.61  Aligned_cols=20  Identities=35%  Similarity=0.526  Sum_probs=16.8

Q ss_pred             EEEEEeCCCCChHHHHHHHH
Q psy13826         88 KYIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~  107 (173)
                      +|++.|..||||||+.--+.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA   22 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLT   22 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            68899999999999876554

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.84  E-value=0.068  Score=38.72  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhhHHhhhcc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      ++++|++|||||.++..+...-
T Consensus        56 ~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          56 FLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCcchHHHHHHHHHHHh
Confidence            6788999999999988776543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.81  E-value=0.09  Score=37.37  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      |+.++|++|+|||+|+..++.+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999999998765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.69  E-value=0.098  Score=39.02  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=20.1

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHhC
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      .-.++++|.+|+|||+++..++..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHH
Confidence            346999999999999998877654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.53  E-value=0.084  Score=37.64  Aligned_cols=15  Identities=33%  Similarity=0.660  Sum_probs=13.2

Q ss_pred             EEEEeCCCCChHHHH
Q psy13826         89 YIIIGDMGVGKSCLL  103 (173)
Q Consensus        89 i~l~G~~~vGKssl~  103 (173)
                      ++|.|.+|+|||+.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=89.46  E-value=0.11  Score=38.94  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      =|++.|+.|+||||.++.++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            3899999999999999998874

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.43  E-value=0.065  Score=37.85  Aligned_cols=15  Identities=20%  Similarity=0.609  Sum_probs=12.9

Q ss_pred             EEEEeCCCCChHHHH
Q psy13826         89 YIIIGDMGVGKSCLL  103 (173)
Q Consensus        89 i~l~G~~~vGKssl~  103 (173)
                      ++|+|.+|+|||+.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            688999999999754

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.34  E-value=0.099  Score=37.15  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      |+.++|++|+|||+|+.....+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999999998865

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.08  E-value=0.079  Score=37.55  Aligned_cols=18  Identities=33%  Similarity=0.569  Sum_probs=15.0

Q ss_pred             EEEEcCCCCchhhhhHHh
Q psy13826         18 YIIIGDMGVGKSCLLHQF   35 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~   35 (173)
                      -+++|+.|+|||+++.-+
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            478899999999997533

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.06  E-value=0.11  Score=35.55  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=18.8

Q ss_pred             EEEEcCCCCchhhhhHHhhhc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .++-|-.|.|||+|++++...
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            577899999999999999875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.93  E-value=0.15  Score=36.11  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTEQKY   40 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~~~~   40 (173)
                      .=|.++|+.+.|||+|++++.+..+
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~   57 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKK   57 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCC
Confidence            3578899999999999999997764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.86  E-value=0.1  Score=35.41  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .|++-|..|+|||+++..+.+
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999987665

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.48  E-value=0.14  Score=33.99  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .|++-|.-|+|||+++..+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588899999999998886663

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=88.21  E-value=0.15  Score=34.77  Aligned_cols=22  Identities=14%  Similarity=0.092  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      -|.+.|..|+||||.++.|...
T Consensus         3 iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3788899999999999998653

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=88.18  E-value=0.15  Score=35.85  Aligned_cols=22  Identities=27%  Similarity=0.219  Sum_probs=18.6

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      =+.+.|++++|||+|+..++..
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3678999999999999988743

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=87.99  E-value=0.21  Score=36.02  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=19.3

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhh
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~   36 (173)
                      ..+-|.+.|.+|+|||++...+.
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHH
Confidence            45678999999999999887665

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.74  E-value=0.19  Score=35.22  Aligned_cols=19  Identities=26%  Similarity=0.375  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCchhhhhHHh
Q psy13826         17 KYIIIGDMGVGKSCLLHQF   35 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~   35 (173)
                      -+++-|-.|||||++..-+
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            4678899999999865443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=87.71  E-value=0.026  Score=37.14  Aligned_cols=19  Identities=32%  Similarity=0.504  Sum_probs=15.9

Q ss_pred             EEEEcCCCCchhhhhHHhh
Q psy13826         18 YIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~   36 (173)
                      .+|+|+.|+|||+|+.-+.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4677999999999997664

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.69  E-value=0.19  Score=35.40  Aligned_cols=19  Identities=32%  Similarity=0.520  Sum_probs=15.3

Q ss_pred             EEEEEeCCCCChHHHHHHH
Q psy13826         88 KYIIIGDMGVGKSCLLHQF  106 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~  106 (173)
                      +|++.|..||||||+.--+
T Consensus         4 ~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6788899999999965544

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=87.26  E-value=0.19  Score=35.42  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=19.6

Q ss_pred             eeEEEEEeCCCCChHHHHHHHHh
Q psy13826         86 IFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        86 ~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .--+++.|+++.|||.|++.+..
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHH
Confidence            34678999999999999998874

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.01  E-value=0.19  Score=35.16  Aligned_cols=19  Identities=26%  Similarity=0.422  Sum_probs=14.6

Q ss_pred             EEEEeCCCCChHHHHHHHH
Q psy13826         89 YIIIGDMGVGKSCLLHQFT  107 (173)
Q Consensus        89 i~l~G~~~vGKssl~~~~~  107 (173)
                      +++.|..||||||+.-.++
T Consensus        11 i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1          11 LFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHH
Confidence            5679999999999554443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.90  E-value=0.12  Score=36.93  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      =|.+.|.+|+|||++...+.+
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999987754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=86.88  E-value=0.18  Score=35.59  Aligned_cols=20  Identities=25%  Similarity=0.507  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchhhhhHHhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~   36 (173)
                      .|.++|..+.|||+|+.++.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            48999999999999999885

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=86.79  E-value=0.25  Score=32.34  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      +-|.+.|.+|+|||+++..+..
T Consensus         4 ~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4677999999999998876643

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=86.56  E-value=0.19  Score=33.53  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -|++-|..|+|||+++.++..
T Consensus         4 fIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377789999999999887764

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.46  E-value=0.21  Score=34.70  Aligned_cols=21  Identities=29%  Similarity=0.539  Sum_probs=18.1

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .|++.|++|+||+.+++.+-.
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHH
Confidence            489999999999999888754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=86.28  E-value=0.22  Score=36.65  Aligned_cols=18  Identities=28%  Similarity=0.449  Sum_probs=15.0

Q ss_pred             EEEEEeCCCCChHHHHHH
Q psy13826         88 KYIIIGDMGVGKSCLLHQ  105 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~  105 (173)
                      -.++.|++|+|||+++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            477899999999998754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=86.24  E-value=0.23  Score=35.90  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .+++.|..|.|||++++-++..
T Consensus       168 nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             CEEEEeeccccchHHHHHHhhh
Confidence            4899999999999999877754

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.05  E-value=0.22  Score=33.57  Aligned_cols=20  Identities=25%  Similarity=0.298  Sum_probs=16.2

Q ss_pred             EEEEcCCCCchhhhhHHhhh
Q psy13826         18 YIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~   37 (173)
                      |++-|..|+|||+++..+..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66779999999998776654

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.88  E-value=0.24  Score=34.45  Aligned_cols=20  Identities=30%  Similarity=0.569  Sum_probs=14.1

Q ss_pred             eEEE-EEeCCCCChHHHHHHH
Q psy13826         87 FKYI-IIGDMGVGKSCLLHQF  106 (173)
Q Consensus        87 ~ki~-l~G~~~vGKssl~~~~  106 (173)
                      .+|+ +-|..||||||+.--+
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            3454 5599999999964443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.60  E-value=0.33  Score=34.30  Aligned_cols=21  Identities=14%  Similarity=0.153  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      .|.++|..+.|||+|+.++..
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            599999999999999998863

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=85.26  E-value=0.21  Score=35.43  Aligned_cols=16  Identities=31%  Similarity=0.613  Sum_probs=13.5

Q ss_pred             EEEEcCCCCchhhhhH
Q psy13826         18 YIIIGDMGVGKSCLLH   33 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~   33 (173)
                      ++|.|.+|.|||+.+.
T Consensus        27 ~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             EEEEECTTSCHHHHHH
T ss_pred             EEEEecCCccHHHHHH
Confidence            7888999999997653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.16  E-value=0.21  Score=36.68  Aligned_cols=18  Identities=39%  Similarity=0.567  Sum_probs=15.3

Q ss_pred             EEEEcCCCCchhhhhHHh
Q psy13826         18 YIIIGDMGVGKSCLLHQF   35 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~   35 (173)
                      -+++|+.|+|||+++..+
T Consensus        28 ~~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            468899999999998665

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.97  E-value=0.34  Score=32.02  Aligned_cols=20  Identities=25%  Similarity=0.458  Sum_probs=16.1

Q ss_pred             EEEEEeCC-CCChHHHHHHHH
Q psy13826         88 KYIIIGDM-GVGKSCLLHQFT  107 (173)
Q Consensus        88 ki~l~G~~-~vGKssl~~~~~  107 (173)
                      |+++.|-. |||||++.--++
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            78899995 999999765554

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=84.85  E-value=0.21  Score=37.07  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=18.1

Q ss_pred             EEEEcCCCCchhhhhHHhhhcc
Q psy13826         18 YIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      ++++|.+|+|||.++..++.+.
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~~   74 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYTG   74 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH
Confidence            7999999999999887666443

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=84.59  E-value=0.28  Score=34.02  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      +|++.|-.|||||++...+..
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~   23 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            577899999999998866543

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.40  E-value=0.24  Score=35.21  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCChHHHHHHHHhC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQ  109 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~  109 (173)
                      |+.++|++|+|||+|+..++.+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998877644

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=84.27  E-value=0.28  Score=34.37  Aligned_cols=22  Identities=27%  Similarity=0.219  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchhhhhHHhhhc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      =+.+.|++++|||+|+.+.+.+
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            3678899999999999988755

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=84.19  E-value=0.18  Score=35.44  Aligned_cols=16  Identities=19%  Similarity=0.565  Sum_probs=13.4

Q ss_pred             EEEEcCCCCchhhhhH
Q psy13826         18 YIIIGDMGVGKSCLLH   33 (173)
Q Consensus        18 ~~~~g~~~vgkt~l~~   33 (173)
                      ++++|.+|.|||+.+.
T Consensus        17 ~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             EEECCCTTSCHHHHHH
T ss_pred             EEEEeeCCccHHHHHH
Confidence            6788999999997653

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.94  E-value=0.4  Score=29.48  Aligned_cols=24  Identities=13%  Similarity=0.126  Sum_probs=20.9

Q ss_pred             eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826         85 YIFKYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        85 ~~~ki~l~G~~~vGKssl~~~~~~  108 (173)
                      .-|-|++-|.+|+||+++.+.+..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            357899999999999999998853

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=83.31  E-value=0.44  Score=34.57  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCchhhhhHHhhh
Q psy13826         14 YIFKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        14 ~~~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      ..++|++=|.-|+|||+++..+..
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             ceEEEEEECCccCCHHHHHHHHHH
Confidence            467999999999999999986664

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.99  E-value=0.46  Score=32.16  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCchhhhhHHhh
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~   36 (173)
                      .+.|+++|..+.|||+|+.++.
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEEecCCCCHHHHHHHHH
Confidence            4689999999999999998885

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.51  E-value=0.48  Score=32.57  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCchhhhhHHhh
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~   36 (173)
                      .+.|+++|....|||+|+.|+.
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHH
T ss_pred             ccEEEEEeCCCCCHHHHHHHHH
Confidence            4789999999999999998886

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.06  E-value=0.26  Score=35.10  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchhhhhHHhhhcc
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTEQK   39 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~~~   39 (173)
                      |+.++|++|+|||+|+.....+.
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~~   92 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIINQ   92 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEeecCCCCChHHHHHHHHHhH
Confidence            78999999999999988777653

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=81.75  E-value=0.46  Score=31.32  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=16.9

Q ss_pred             EEEEEcCC-CCchhhhhHHhhh
Q psy13826         17 KYIIIGDM-GVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~-~vgkt~l~~~~~~   37 (173)
                      |+++.|-. |||||++..-+..
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            78899996 9999988765553

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=81.66  E-value=0.5  Score=31.40  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCchhhhhHHhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~   36 (173)
                      +-|.+.|..|+|||+++..|.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            467799999999999887654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=81.59  E-value=0.49  Score=34.32  Aligned_cols=24  Identities=21%  Similarity=0.542  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCchhhhhHHhhhc
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFTEQ   38 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~~~   38 (173)
                      .++|++=|.-|+|||+++..+...
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999877653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=81.57  E-value=0.31  Score=32.86  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      =+++.|+++.|||.++..+++
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            388999999999988876654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=81.46  E-value=0.39  Score=33.19  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCchhhhhHHhh
Q psy13826         15 IFKYIIIGDMGVGKSCLLHQFT   36 (173)
Q Consensus        15 ~~k~~~~g~~~vgkt~l~~~~~   36 (173)
                      .+.|+++|..+.|||+|+.++.
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHH
T ss_pred             ceEEEEEeeCCCCHHHHHHHHH
Confidence            4579999999999999999885

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.33  E-value=0.51  Score=33.12  Aligned_cols=21  Identities=24%  Similarity=0.162  Sum_probs=18.0

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      =..+.|++++|||+|+..++-
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            356889999999999988874

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=81.28  E-value=0.61  Score=31.04  Aligned_cols=22  Identities=27%  Similarity=0.629  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCchhhhhHHhhh
Q psy13826         16 FKYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        16 ~k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      |-|.+.|..|+|||+++..|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4577999999999998876653

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.03  E-value=0.5  Score=33.22  Aligned_cols=21  Identities=19%  Similarity=0.159  Sum_probs=17.8

Q ss_pred             EEEEEeCCCCChHHHHHHHHh
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTE  108 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~  108 (173)
                      =..+.|++++|||+|+..++.
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            367899999999999887764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.98  E-value=0.45  Score=32.15  Aligned_cols=21  Identities=33%  Similarity=0.594  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCchhhhhHHhhh
Q psy13826         17 KYIIIGDMGVGKSCLLHQFTE   37 (173)
Q Consensus        17 k~~~~g~~~vgkt~l~~~~~~   37 (173)
                      -|++=|.-|+|||+++..+..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            477889999999999977764

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=80.81  E-value=0.36  Score=34.10  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCChHHHHHHHHhCC
Q psy13826         88 KYIIIGDMGVGKSCLLHQFTEQK  110 (173)
Q Consensus        88 ki~l~G~~~vGKssl~~~~~~~~  110 (173)
                      |+.++|++|+|||+|+.....+.
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEeeccCCCCChHHHHHHHHhhh
Confidence            78899999999999998766543