Psyllid ID: psy13857

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MFFGKSRGPIGVFKITKESRTIWCRRVLIFTDTTTPGPSVNASDPNSSDPPKPALYYQMLTLLTSDPVMLGSLSMNHTIVNIQVQNIWGVVNTPILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKPHW
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEEcEEccccccccccccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEccccEEEEEEEEEEEccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccEEEEEEEEEEEEccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mffgksrgpigvfkitkesrtiWCRRVLIftdtttpgpsvnasdpnssdppkpaLYYQMLTLltsdpvmlgslsmnHTIVNIQVqniwgvvntpilkFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNiacemgskNELLITELLFQNKLVNFTPEEIAALLSCLVfqsktttptelpesLKQGMSIIADMNIEVESIekkhgverdksseeadnLNFGLVQVVYEWAMQKPHW
Flexible Loop (DISEMBL)
mffgksrgpigvfkitkesrtiwCRRVLIFtdtttpgpsvnasdpnssdppKPALYYQMLTLLTSDPVMLGSLSMNHTIVNIQVQNIWGVVNTPILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTttptelpeslkQGMSIIADMNIEVESIEKKHGverdksseeadnlnfgLVQVVYEWAMQKPHW
Low Complexity Region (SEG)
MFFGKSRGPIGVFKITKESRTIWCRRVLIFTDTTTPGPSVNASDPNSSDPPKPALYYQMLTLLTSDPVMLGSLSMNHTIVNIQVQNIWGVVNTPILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKPHW
Disordered region (IsUnstruct)
********PIGVFKITKESRTIWCRRVLIFTDT********************ALYYQMLTLLTSDPVMLGSLSMNHTIVNIQVQNIWGVVNTPILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQS******************I***************************LNFGLVQVVYEWAM*****
Disordered Region (DISOPRED)
*******GPIGVFKITKESRTIWCRRVLIF******************************************LSMNHTI**********VVNTPILKFYHIYKRKEDHNRLSELK***S***MSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKPHW
Disordered Region (DISEMBL)
MFFGKSRGPIGVFKITKESRTIWCRRVLIFTDTTTP**************PKPALYYQMLTLLTSDPVMLGSLSMNHTIVNIQVQNIWGVVNTPILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEK************ADNLNFGLVQVVYEWAMQKPHW
Disordered Region (DISPRO)
****KSRGPIGVFKITKESRTIWCRRVLIFTDTTT****VN*S*P*SSDPPKPALYYQMLTLLTSDPVMLGSLSMNHTIVNIQVQNIWGVVNTPILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKPHW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFFGKSRGPIGVFKITKESRTIWCRRVLIFTDTTTPGPSVNASDPNSSDPPKPALYYQMLTLLTSDPVMLGSLSMNHTIVNIQVQNIWGVVNTPILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKPHW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q15477	1246	Helicase SKI2W OS=Homo sa	yes	N/A	0.610	0.126	0.395	8e-23
O59801	1213	Putative ATP-dependent RN	yes	N/A	0.633	0.135	0.347	5e-22
P35207	1287	Antiviral helicase SKI2 O	yes	N/A	0.575	0.115	0.356	1e-18
O14232	1117	ATP-dependent RNA helicas	no	N/A	0.532	0.123	0.328	5e-16
P47047	1073	ATP-dependent RNA helicas	no	N/A	0.602	0.145	0.308	1e-13
P42285	1042	Superkiller viralicidic a	no	N/A	0.459	0.114	0.3	1e-11
Q9CZU3	1040	Superkiller viralicidic a	no	N/A	0.459	0.114	0.3	1e-11
Q23223	1026	mRNA transport homolog 4	no	N/A	0.467	0.117	0.338	1e-11
O13799	1030	Uncharacterized helicase	no	N/A	0.366	0.092	0.387	5e-10
Q10701	906	Probable helicase HelY OS	yes	N/A	0.555	0.158	0.234	0.0005

>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3

 Score =  107 bits (267), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 97/162 (59%), Gaps = 4/162 (2%)

Query: 97   KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
            ++  + +R +    +  L+ LLS + + L  +Y  +V+VL+ L Y++  G V+L G +AC
Sbjct: 1023 QYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC 1082

Query: 157  EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
             M S +ELL+TEL+F N L    PEEIAALLS LV QS      +LP +LKQG+  +  +
Sbjct: 1083 AM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAV 1141

Query: 217  NIEVESIEKKHGVERDKSSEE-ADNLNFGLVQVVYEWAMQKP 257
               +  ++   G+  +++ EE    LNFGLV+VVYEWA   P
Sbjct: 1142 AKRIGEVQVACGL--NQTVEEFVGELNFGLVEVVYEWARGMP 1181

Helicase; has ATPase activity. Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C).
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -

>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 98/167 (58%), Gaps = 3/167 (1%)

Query: 90   VVNTP--ILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGI 147
            +++TP  +  F   Y+  E  + +  L   +S + + L  DY+ ++KVLQEL YI+++  
Sbjct: 979  IISTPNFLTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQRIKVLQELGYIDAERT 1038

Query: 148  VQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLK 207
            V LKG +ACE+ S +EL++TEL+ +N L +F+ EE  ALLS  VF  KT     +   L+
Sbjct: 1039 VLLKGRVACEINSTSELVLTELILENSLADFSCEETIALLSAFVFDEKTEVEPTISPHLQ 1098

Query: 208  QGMSIIADMNIEVESIEKKHGV-ERDKSSEEADNLNFGLVQVVYEWA 253
            +G  +I  +  +V  I++ + V   ++ ++      FGL++V YEWA
Sbjct: 1099 KGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQPRFGLMEVCYEWA 1145

RNA helicase component of the SKI complex involved in 3'-mRNA degradation pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI2 PE=1 SV=2

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 8/157 (5%)

Query: 100  HIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMG 159
            H+ K+K     + EL HL+S + +SL  DY+ ++ VL++  +I+    V LKG +ACE+ 
Sbjct: 1068 HVIKKK-----IEELYHLMSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEIN 1122

Query: 160  SKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTT--TPTELPESLKQGMSIIADMN 217
            S  EL++TEL+  N L +F PEEI ALLS  V++ KT    P  +   L +G   I ++ 
Sbjct: 1123 SGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIY 1182

Query: 218  IEVESIEKKHGVERDKSSEE-ADNLNFGLVQVVYEWA 253
             ++  +   H +   +   E  D   F ++ VVYEWA
Sbjct: 1183 KKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWA 1219

RNA helicase component of the SKI complex involved in 3'-mRNA degradation pathway. Represses dsRNA virus propagation by specifically blocking translation of viral mRNAs, perhaps recognizing the absence of CAP or poly(A). Essential for cell growth only in the presence of M1 replicon.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 80/140 (57%), Gaps = 2/140 (1%)

Query: 115  KHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNK 174
            K L   + +    + +S+ +VL+ L +  S  ++++KG +ACE+ S + LL+TEL+F   
Sbjct: 911  KKLSKARSIMQLDELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNGM 970

Query: 175  LVNFTPEEIAALLSCLVFQSKTTTPTE-LPESLKQGMSIIADMNIEVESIEKKHGVERDK 233
              + TPE+ AALLSCLVFQ K+    + + E L   + I+ +M   +  + K+   E ++
Sbjct: 971  FNDLTPEQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKESKQELNE 1030

Query: 234  SSEEADNLNFGLVQVVYEWA 253
              E  ++    L++VVY WA
Sbjct: 1031 -EEYVNSFKPSLMEVVYAWA 1049

Component of the TRAMP complex which has a poly(A) RNA polymerase activity and is involved in a post-transcriptional quality control mechanism limiting inappropriate expression of genetic information. Polyadenylation is required for the degradative activity of the exosome on several of its nuclear RNA substrates (By similarity). Required for heterochromatic gene silencing at centromeric repeats by either exosome- or RNAi-mediated degradation of heterochromatic transcripts.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 3/159 (1%)

Query: 97   KFYHIYKRKED-HNRLSELKHLLSH-KGMSLYADYDSKVKVLQELNYINSQGIVQLKGNI 154
            + Y  Y RK D H  + +LK  +S  + +    D   + +VL+ L +     I++LKG +
Sbjct: 848  ELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRV 907

Query: 155  ACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIA 214
            ACE+ S +ELL+TEL+F        PE+ AALLSC  FQ +      L   L + +  + 
Sbjct: 908  ACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMR 967

Query: 215  DMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
            ++  ++  I K   +E     +  ++    L++VVYEW 
Sbjct: 968  EIAAKIAKIMKDSKIEV-VEKDYVESFRHELMEVVYEWC 1005

ATP-dependent RNA helicase required for the 3'-end formation of 5.8S RNA. Cofactor for the exosome complex that unwinds secondary structure in pre-rRNA. Required for nucleocytoplasmic transport of mRNA. May serve as a chaperone which translocates or normalizes the structure of mRNAs in preparation for export. Component of the TRAMP complex which has a poly(A) RNA polymerase activity and is involved in a post-transcriptional quality control mechanism limiting inappropriate expression of genetic information. Polyadenylation is required for the degradative activity of the exosome on several of its nuclear RNA substrates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 134 KVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQ 193
           +VL+ L +  S  ++++KG +ACE+ S +ELL+TE++F     + + E+  ALLSC VFQ
Sbjct: 856 RVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQ 915

Query: 194 SKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
             ++   +L E L   +  + +    +  +  +  +E D+ +    +    L+ VVY WA
Sbjct: 916 ENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEET-YLSSFKPHLMDVVYTWA 974

May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 134 KVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQ 193
           +VL+ L +  S  ++++KG +ACE+ S +ELL+TE++F     + + E+  ALLSC VFQ
Sbjct: 854 RVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQATALLSCFVFQ 913

Query: 194 SKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
             ++   +L E L   +  + +    +  +  +  +E D+ +    +    L+ VVY WA
Sbjct: 914 ENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEET-YLSSFKPHLMDVVYTWA 972

May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 6/127 (4%)

Query: 128 DYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALL 187
           + +++ +VL+ L Y+ +   + LKG++ACE+ + +EL++TE+L +         + AALL
Sbjct: 835 ELNNRKRVLRRLGYLGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAALL 894

Query: 188 SCLVFQSKTTTPTELPESLKQGMSIIADM--NIEVESIEKKHGVERDKSSEEADNLNFGL 245
           SC VFQ K   P +L   L+  +S + +   N+   S E K  V  DK      + N GL
Sbjct: 895 SCFVFQDKCAAP-KLATELQTCLSELHEQARNVAKVSNECKMEVMEDKY---VSSFNPGL 950

Query: 246 VQVVYEW 252
           + VVY+W
Sbjct: 951 MDVVYQW 957

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 3/98 (3%)

Query: 132 KVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLV 191
           + +VL+ L +   + ++ +KG +ACE+ S +ELL+ EL+FQ       PEEIAA LSC V
Sbjct: 841 RQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFV 900

Query: 192 FQSKTTTPT-ELPESLKQG-MSII-ADMNIEVESIEKK 226
           ++ K+   T  L E  K+  ++II A   I   S+E K
Sbjct: 901 YEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATVSLESK 938

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 18/162 (11%)

Query: 102 YKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYIN---SQGIVQLKGNIACEM 158
           Y R E  N  ++L+  ++    SL   +D  V +L E  +I+   +  +V   G +   +
Sbjct: 683 YLRIERDN--AQLERKVAAATNSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARI 740

Query: 159 GSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELP-------ESLKQGMS 211
            S+++LL+ E L         P E+A ++S +V++++       P         L+Q ++
Sbjct: 741 YSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALT 800

Query: 212 IIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
             + ++  + + E+ H   R   S E D+   G V+V+Y W+
Sbjct: 801 QTSRLSTTLRADEQAH---RITPSREPDD---GFVRVIYRWS 836

Mycobacterium tuberculosis (taxid: 1773)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
170034314	1216	antiviral helicase SKI2 [Culex quinquefa	0.590	0.125	0.490	1e-34
157137573	947	helicase [Aedes aegypti] gi|108869679|gb	0.833	0.228	0.386	2e-32
357617976	1252	hypothetical protein KGM_14675 [Danaus p	0.610	0.126	0.459	7e-32
347969420	1223	AGAP003182-PA [Anopheles gambiae str. PE	0.660	0.139	0.429	9e-31
242017221	1184	Helicase, putative [Pediculus humanus co	0.598	0.130	0.466	4e-30
312385895	1749	hypothetical protein AND_00228 [Anophele	0.606	0.089	0.407	2e-28
326428725	1363	ATP-dependent DEAD/H RNA helicase [Salpi	0.594	0.112	0.407	7e-28
302697493	1118	hypothetical protein SCHCODRAFT_64062 [S	0.606	0.140	0.4	1e-27
390604989	1256	antiviral helicase [Punctularia strigoso	0.552	0.113	0.435	1e-27
195145412	1197	GL24270 [Drosophila persimilis] gi|19410	0.602	0.130	0.447	2e-27

>gi|170034314|ref|XP_001845019.1| antiviral helicase SKI2 [Culex quinquefasciatus] gi|167875652|gb|EDS39035.1| antiviral helicase SKI2 [Culex quinquefasciatus]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 113/165 (68%), Gaps = 12/165 (7%)

Query: 97   KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
            +F  +Y RK+   +L +LK+ +S+K MSLY DY +K+KVLQEL YI+    V +KG +AC
Sbjct: 984  EFAFVYDRKQLETKLEDLKYQVSYKSMSLYPDYCNKLKVLQELKYIDDMQQVAMKGRVAC 1043

Query: 157  EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
            EMG +NEL+ITEL+ +N L +  P EIAALLS LVFQSKT    ++ E+LK+  ++  ++
Sbjct: 1044 EMG-QNELMITELVLRNILTDLQPAEIAALLSSLVFQSKTEVEPKMIETLKKARALFEEV 1102

Query: 217  NIEVESIEKKHGV----ERDKSSEEADNLNFGLVQVVYEWAMQKP 257
              ++ S+E+ +GV    ERDK       LNFGLV+VVYEWA  KP
Sbjct: 1103 ERDIRSVEQMYGVTDLLERDK-------LNFGLVEVVYEWAQNKP 1140

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157137573|ref|XP_001664014.1| helicase [Aedes aegypti] gi|108869679|gb|EAT33904.1| AAEL013825-PA [Aedes aegypti]

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/233 (38%), Positives = 133/233 (57%), Gaps = 17/233 (7%)

Query: 38  PSVNASDPNSSDPPKPALYYQMLTLLTSDPVMLGSLSMNHTIV----NIQVQNIWGVVN- 92
           P      P+ S     A   ++ T + ++ + L SL    T+     N ++Q    V++ 
Sbjct: 643 PRFKDQPPSQSVLDAMAALTELNTAVVNESIKLESLKYQLTLTQLKQNEELQKARDVLDR 702

Query: 93  ----TPILKFYH----IYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINS 144
               T I  F H    ++ RK+   +L +LK  +S+K MSLY DY +K+KVLQEL YI+ 
Sbjct: 703 YLPYTDIADFVHEFAIVFDRKQVEKKLDDLKFQVSYKSMSLYPDYCNKLKVLQELKYIDD 762

Query: 145 QGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPE 204
              V +KG +ACEMG +NEL+ITEL+ +N L +  P EIAALLS LVFQ+KT    ++ E
Sbjct: 763 MQQVAMKGRVACEMG-QNELMITELVLRNILTDLQPAEIAALLSSLVFQAKTEVEPKMTE 821

Query: 205 SLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKP 257
           +LK+   +  ++  ++  +EK + V       E D LNFGL++VVYEWA  KP
Sbjct: 822 TLKKAKVLFEEVENDIRYVEKMYNV---TDILEKDELNFGLIEVVYEWARNKP 871

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617976|gb|EHJ71092.1| hypothetical protein KGM_14675 [Danaus plexippus]

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 108/161 (67%), Gaps = 3/161 (1%)

Query: 97   KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
            +F  +Y+RK+   +  + K LLS + ++LY DY  ++ VL+ELNYI+    V LKG +AC
Sbjct: 1023 EFAVVYERKQAERKRDKYKRLLSFENLALYPDYQRRLMVLRELNYIDDHDSVILKGRVAC 1082

Query: 157  EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
             MG+ NEL+I+EL+F+N   +  P EIAALLSC VFQ+KT     L E L+ G+  I  +
Sbjct: 1083 CMGT-NELIISELVFRNVFTDKNPAEIAALLSCFVFQAKTRVEPALTEKLQAGVKAIEQI 1141

Query: 217  NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKP 257
            + E+  IE K+ V + +   +A+ LNFGLV+VVYEWA++KP
Sbjct: 1142 DDELTRIEAKYMVGQFEG--QAERLNFGLVRVVYEWALEKP 1180

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969420|ref|XP_312880.4| AGAP003182-PA [Anopheles gambiae str. PEST] gi|333468516|gb|EAA08476.4| AGAP003182-PA [Anopheles gambiae str. PEST]

 Score =  139 bits (351), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 115/184 (62%), Gaps = 13/184 (7%)

Query: 83   QVQNIWGVVN-----TPILKFYH----IYKRKEDHNRLSELKHLLSHKGMSLYADYDSKV 133
            Q+Q   G +N     T +  F H    +Y RK+   +L ELK+  S++ +SLY DY  K+
Sbjct: 970  QLQTAQGRLNRWLPYTGMADFEHEFAVVYDRKQLERKLDELKYQASYESLSLYPDYCRKL 1029

Query: 134  KVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQ 193
            +VLQEL YI+    V +KG +ACEMG +NEL+ITEL+ +N L +  P EIAALLS LVFQ
Sbjct: 1030 QVLQELKYIDDMQQVAMKGRVACEMG-QNELMITELVMRNILTDLQPAEIAALLSSLVFQ 1088

Query: 194  SKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
            +K+    +L E+L++  +   ++  ++  +E+++GV      EE   LNFGL +VVYEWA
Sbjct: 1089 AKSDVTPKLTETLQKAEAQFREVENDIRLVERQYGVTDVCKKEE---LNFGLTEVVYEWA 1145

Query: 254  MQKP 257
              KP
Sbjct: 1146 RNKP 1149

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017221|ref|XP_002429090.1| Helicase, putative [Pediculus humanus corporis] gi|212513954|gb|EEB16352.1| Helicase, putative [Pediculus humanus corporis]

 Score =  137 bits (346), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 110/163 (67%), Gaps = 8/163 (4%)

Query: 96   LKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIA 155
             K   + K+KE+      LK LLS++ MSLY+DY S++ VL+ LNY++S+  VQ+KGN+A
Sbjct: 964  FKLLCLEKKKEN------LKFLLSYQSMSLYSDYKSRLAVLKMLNYLDSKNSVQMKGNVA 1017

Query: 156  CEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTT-PTELPESLKQGMSIIA 214
            CEM S+ ELLITEL+F+N L +  P EIAALLSC V+Q K    P +L  +L+ G++ I 
Sbjct: 1018 CEMSSQ-ELLITELVFRNALNDLQPPEIAALLSCFVYQGKKKNEPLQLTATLEAGIARIK 1076

Query: 215  DMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKP 257
             +  +V   E+  GV + +++   +N+NF LV VVYEWA +KP
Sbjct: 1077 KIAKDVFEAEEICGVNQAEATGNEENMNFDLVPVVYEWAREKP 1119

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385895|gb|EFR30287.1| hypothetical protein AND_00228 [Anopheles darlingi]

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/189 (40%), Positives = 111/189 (58%), Gaps = 32/189 (16%)

Query: 97   KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINS--QG-------- 146
            +F  +Y R +   +L +LK  +S++ MSLY DY  K++VLQ+L YI+   QG        
Sbjct: 1479 EFALVYDRMQLERKLDDLKFQVSYESMSLYPDYCRKLEVLQDLKYIDDMHQGRWCVCRCS 1538

Query: 147  ------------------IVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLS 188
                               V +KG +ACEMG +NEL+ITEL+ +N L +  P EIAALLS
Sbjct: 1539 GDGIAKGCCCSPFAACLVTVAMKGRVACEMG-QNELMITELVMRNILTDLQPAEIAALLS 1597

Query: 189  CLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQV 248
             LVFQ+KT    +L E+L++ ++   ++  ++ S+E++HGV      EE   LNFGLV+V
Sbjct: 1598 SLVFQAKTDVSPKLTETLEKAVTQFREVENDIRSVERQHGVMEVVKKEE---LNFGLVEV 1654

Query: 249  VYEWAMQKP 257
            VYEWA  KP
Sbjct: 1655 VYEWACNKP 1663

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326428725|gb|EGD74295.1| ATP-dependent DEAD/H RNA helicase [Salpingoeca sp. ATCC 50818]

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 104/157 (66%), Gaps = 3/157 (1%)

Query: 98   FYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACE 157
            +  +++R+   N++  L+H LS + ++L  +Y+ +++V+Q L +INS+ IVQLKG +ACE
Sbjct: 1138 YGRLHERRVLMNQIDSLQHQLSDRNLTLLPEYEQRIEVMQRLQFINSERIVQLKGRVACE 1197

Query: 158  MGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMN 217
            + + NELL+T+L+F + L    PEE+ ALLSC+VFQ++  +   L   L++G+S I  M 
Sbjct: 1198 ITTCNELLVTQLIFHDILTPLDPEEVVALLSCMVFQNRRASEPRLTPRLEEGVSTITRMA 1257

Query: 218  IEVESIEKKHGVERDKSSEE-ADNLNFGLVQVVYEWA 253
            IE+   +   G++   S EE  +   FGLV+VVYEWA
Sbjct: 1258 IEIAETQLACGMQ--VSVEEYLEEFKFGLVEVVYEWA 1292

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|302697493|ref|XP_003038425.1| hypothetical protein SCHCODRAFT_64062 [Schizophyllum commune H4-8] gi|300112122|gb|EFJ03523.1| hypothetical protein SCHCODRAFT_64062 [Schizophyllum commune H4-8]

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 97/160 (60%), Gaps = 3/160 (1%)

Query: 98   FYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACE 157
            +  I+  K     ++ LK  +S + + L  DY+ +++VL++L +I+    V LKG +ACE
Sbjct: 898  YTTIHAEKVLRANIANLKLAISDQNLELIPDYEQRIEVLKDLKFIDENCTVSLKGRVACE 957

Query: 158  MGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMN 217
            + S NEL++TEL+ +N L N+ PEE+ ALLSC VFQ KT     +P  LK+GM  I  ++
Sbjct: 958  INSANELVLTELILENTLANYDPEEVVALLSCFVFQEKTDAEPAIPPKLKEGMEAIMAIS 1017

Query: 218  IEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKP 257
              V +++  H V    + +   NL FGLV+VVYEWA   P
Sbjct: 1018 DRVGAVQDYHKV---AAEDFRSNLKFGLVEVVYEWAKGMP 1054

Source: Schizophyllum commune H4-8

Species: Schizophyllum commune

Genus: Schizophyllum

Family: Schizophyllaceae

Order: Agaricales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|390604989|gb|EIN14380.1| antiviral helicase [Punctularia strigosozonata HHB-11173 SS5]

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 92/147 (62%), Gaps = 4/147 (2%)

Query: 111  LSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELL 170
            ++ELK  +S + + L  DY+ ++ VLQEL +I+ Q  V LKG +ACE+ S NEL++TEL+
Sbjct: 1050 IAELKLAISDQNLELIPDYEQRIAVLQELKFIDEQSTVLLKGRVACEINSANELVLTELI 1109

Query: 171  FQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVE 230
             +N L ++ PEEIAALLSC VFQ KT     +   L++G   I  +   V  ++  H V 
Sbjct: 1110 LENALASYEPEEIAALLSCFVFQEKTDNEPSVSPKLEEGRDTILAIEARVGRVQDAHKV- 1168

Query: 231  RDKSSEEADNLNFGLVQVVYEWAMQKP 257
               ++EE   L FGL++VVYEWA   P
Sbjct: 1169 ---AAEEFRALKFGLMEVVYEWAKGMP 1192

Source: Punctularia strigosozonata HHB-11173 SS5

Species: Punctularia strigosozonata

Genus: Punctularia

Family: Punctulariaceae

Order: Corticiales

Class: Agaricomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|195145412|ref|XP_002013687.1| GL24270 [Drosophila persimilis] gi|194102630|gb|EDW24673.1| GL24270 [Drosophila persimilis]

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 102/161 (63%), Gaps = 5/161 (3%)

Query: 97   KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
            +F  +Y+R+     + EL+   S K +SLY DY +K+KVL  LNYI+ Q  V LKG +AC
Sbjct: 976  EFAKVYERRMLELHIEELRFKNSAKNLSLYPDYCNKLKVLHALNYIDEQNEVTLKGKVAC 1035

Query: 157  EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
            EMG +NELLITEL+  N   +  P EIAALLS LVFQ+K      +PE+LK+ ++    +
Sbjct: 1036 EMG-QNELLITELILCNMFNDLEPAEIAALLSGLVFQAKIQGEPVIPEALKECVAAFEQI 1094

Query: 217  NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKP 257
            + ++ + E++       S+E    LNFGL++VVYEWA  KP
Sbjct: 1095 SDKILAEEQRF----QASTESESRLNFGLLEVVYEWARNKP 1131

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
FB|FBgn0039117	1197	tst "twister" [Drosophila mela	0.598	0.129	0.438	6.5e-26
UNIPROTKB|E2RSD6	1246	SKIV2L "Uncharacterized protei	0.652	0.135	0.388	4e-25
UNIPROTKB|H7C4L3	182	SKIV2L "Helicase SKI2W" [Homo	0.598	0.851	0.394	1.6e-24
UNIPROTKB|Q15477	1246	SKIV2L "Helicase SKI2W" [Homo	0.613	0.127	0.391	2.8e-24
ASPGD|ASPL0000004985	1293	AN6007 [Emericella nidulans (t	0.606	0.121	0.374	2.9e-24
UNIPROTKB|F5H6Y7	880	SKIV2L "Helicase SKI2W" [Homo	0.613	0.180	0.391	1.1e-23
UNIPROTKB|F5H7B0	1053	SKIV2L "Helicase SKI2W" [Homo	0.613	0.150	0.391	1.5e-23
UNIPROTKB|F8VS23	1053	SKIV2L "Helicase SKI2W" [Homo	0.613	0.150	0.391	1.5e-23
UNIPROTKB|E1BMS0	1246	LOC100139548 "Uncharacterized	0.613	0.127	0.391	1.5e-23
UNIPROTKB|B4DM01	1088	SKIV2L "cDNA FLJ57529, highly	0.613	0.146	0.391	1.6e-23

FB|FBgn0039117 tst "twister" [Drosophila melanogaster (taxid:7227)]

 Score = 306 (112.8 bits), Expect = 6.5e-26, P = 6.5e-26
 Identities = 71/162 (43%), Positives = 103/162 (63%)

Query:    97 KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
             +F  +Y+R+     + EL+   S + ++LY DY +K+KVL+ L YI+    V LKG +AC
Sbjct:   976 EFAKVYERRMLEIHIEELRFKNSARNLTLYPDYCNKLKVLRALKYIDELDEVTLKGKVAC 1035

Query:   157 EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
             EMG +NELLITEL+  N   +  P EIAALLS LVFQ+K      +PE+LK+ ++    +
Sbjct:  1036 EMG-QNELLITELILCNMFNDLEPAEIAALLSGLVFQAKMQDKPVIPEALKECVAAFEQI 1094

Query:   217 NIEVESIEKKHGVERDKSSEEADN-LNFGLVQVVYEWAMQKP 257
             N  + + E     +R +++ E DN LNFGL++VVYEWA  KP
Sbjct:  1095 NDTILAEE-----QRFQAAIETDNRLNFGLLEVVYEWARNKP 1131

GO:0004386 "helicase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|E2RSD6 SKIV2L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 289 (106.8 bits), Expect = 4.0e-25, Sum P(2) = 4.0e-25
 Identities = 68/175 (38%), Positives = 101/175 (57%)

Query:    87 IWGV--VNTPIL--KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYI 142
             IWG   V++P    ++  + +R +    +  L+ LLS + + L  +Y  +V+VL+ L Y+
Sbjct:  1009 IWGAQCVHSPRFSAQYVKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYV 1068

Query:   143 NSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTEL 202
             +  G V+L G +AC M S +ELL+TEL+F N L    PEEIAALLS LV QS      +L
Sbjct:  1069 DEAGTVKLAGRVACAMSS-HELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGEQL 1127

Query:   203 PESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKP 257
             P +LKQG+  +  +   +  ++   G+ +    E    LNFGLV+VVYEWA   P
Sbjct:  1128 PSTLKQGVERVRAVARRIGEVQVACGLNQTVE-EFVGELNFGLVEVVYEWARGMP 1181

GO:0055087 "Ski complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|H7C4L3 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 62/157 (39%), Positives = 93/157 (59%)

Query:    97 KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
             ++  + +R +    +  L+ LLS + + L  +Y  +V+VL+ L Y++  G V+L G +AC
Sbjct:    22 QYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC 81

Query:   157 EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
              M S +ELL+TEL+F N L    PEEIAALLS LV QS      +LP +LKQG+  +  +
Sbjct:    82 AMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAV 140

Query:   217 NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
                +  ++   G+ +    E    LNFGLV+VVYEWA
Sbjct:   141 AKRIGEVQVACGLNQTVE-EFVGELNFGLVEVVYEWA 176

GO:0005524 "ATP binding" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

UNIPROTKB|Q15477 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
 Identities = 63/161 (39%), Positives = 94/161 (58%)

Query:    97 KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
             ++  + +R +    +  L+ LLS + + L  +Y  +V+VL+ L Y++  G V+L G +AC
Sbjct:  1023 QYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC 1082

Query:   157 EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
              M S +ELL+TEL+F N L    PEEIAALLS LV QS      +LP +LKQG+  +  +
Sbjct:  1083 AMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAV 1141

Query:   217 NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKP 257
                +  ++   G+ +    E    LNFGLV+VVYEWA   P
Sbjct:  1142 AKRIGEVQVACGLNQTVE-EFVGELNFGLVEVVYEWARGMP 1181

GO:0003723 "RNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0055087 "Ski complex" evidence=IDA

GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS

ASPGD|ASPL0000004985 AN6007 [Emericella nidulans (taxid:162425)]

 Score = 291 (107.5 bits), Expect = 2.9e-24, P = 2.9e-24
 Identities = 61/163 (37%), Positives = 98/163 (60%)

Query:    97 KFYHIYKRKEDH----NRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKG 152
             KF   ++ + D       +S+LK L+S + + L  DY+ +++VL++L +++ Q  VQLKG
Sbjct:  1063 KFLKHFEMQRDEWQIKENISQLKQLMSDQNLQLLPDYEQRIQVLKDLGFVDEQSRVQLKG 1122

Query:   153 NIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSI 212
              +ACE+ S +EL++TEL+ +N L  + PEEI ALLS  VFQ KT     L   L++G   
Sbjct:  1123 KVACEIHSADELVLTELILENVLAEYEPEEIVALLSAFVFQEKTENVPTLNPRLEKGKEA 1182

Query:   213 IADMNIEVESIEKKHGV--ERDKSSEEADNLNFGLVQVVYEWA 253
             I  ++ +V  ++ +H V    +  ++ A    FGL +VVYEWA
Sbjct:  1183 IIRISEKVNDVQIQHQVLQSTEDINDFASQPRFGLAEVVYEWA 1225

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

UNIPROTKB|F5H6Y7 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 63/161 (39%), Positives = 94/161 (58%)

Query:    97 KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
             ++  + +R +    +  L+ LLS + + L  +Y  +V+VL+ L Y++  G V+L G +AC
Sbjct:   657 QYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC 716

Query:   157 EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
              M S +ELL+TEL+F N L    PEEIAALLS LV QS      +LP +LKQG+  +  +
Sbjct:   717 AMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAV 775

Query:   217 NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKP 257
                +  ++   G+ +    E    LNFGLV+VVYEWA   P
Sbjct:   776 AKRIGEVQVACGLNQTVE-EFVGELNFGLVEVVYEWARGMP 815

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F5H7B0 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 63/161 (39%), Positives = 94/161 (58%)

Query:    97 KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
             ++  + +R +    +  L+ LLS + + L  +Y  +V+VL+ L Y++  G V+L G +AC
Sbjct:   830 QYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC 889

Query:   157 EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
              M S +ELL+TEL+F N L    PEEIAALLS LV QS      +LP +LKQG+  +  +
Sbjct:   890 AMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAV 948

Query:   217 NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKP 257
                +  ++   G+ +    E    LNFGLV+VVYEWA   P
Sbjct:   949 AKRIGEVQVACGLNQTVE-EFVGELNFGLVEVVYEWARGMP 988

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F8VS23 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 63/161 (39%), Positives = 94/161 (58%)

Query:    97 KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
             ++  + +R +    +  L+ LLS + + L  +Y  +V+VL+ L Y++  G V+L G +AC
Sbjct:   830 QYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC 889

Query:   157 EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
              M S +ELL+TEL+F N L    PEEIAALLS LV QS      +LP +LKQG+  +  +
Sbjct:   890 AMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAV 948

Query:   217 NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKP 257
                +  ++   G+ +    E    LNFGLV+VVYEWA   P
Sbjct:   949 AKRIGEVQVACGLNQTVE-EFVGELNFGLVEVVYEWARGMP 988

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1BMS0 LOC100139548 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 284 (105.0 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 63/161 (39%), Positives = 94/161 (58%)

Query:    97 KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
             ++  + +R +    +  L+ LLS + + L  +Y  +V+VL+ L Y++  G V+L G +AC
Sbjct:  1023 QYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC 1082

Query:   157 EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
              M S +ELL+TEL+F N L    PEEIAALLS LV QS      +LP +LKQG+  +  +
Sbjct:  1083 AMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVRTV 1141

Query:   217 NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKP 257
                +  ++   G+ +    E    LNFGLV+VVYEWA   P
Sbjct:  1142 AKRIGEVQAACGLNQTVE-EFVGELNFGLVEVVYEWARGMP 1181

GO:0055087 "Ski complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|B4DM01 SKIV2L "cDNA FLJ57529, highly similar to Helicase SKI2W (EC 3.6.1.-)" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 1.6e-23, P = 1.6e-23
 Identities = 63/161 (39%), Positives = 94/161 (58%)

Query:    97 KFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIAC 156
             ++  + +R +    +  L+ LLS + + L  +Y  +V+VL+ L Y++  G V+L G +AC
Sbjct:   865 QYLKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC 924

Query:   157 EMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADM 216
              M S +ELL+TEL+F N L    PEEIAALLS LV QS      +LP +LKQG+  +  +
Sbjct:   925 AMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAV 983

Query:   217 NIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKP 257
                +  ++   G+ +    E    LNFGLV+VVYEWA   P
Sbjct:   984 AKRIGEVQVACGLNQTVE-EFVGELNFGLVEVVYEWARGMP 1023

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	259
pfam08148	178	pfam08148, DSHCT, DSHCT (NUC185) domain	7e-31
COG4581	1041	COG4581, COG4581, Superfamily II RNA helicase [DNA	2e-21
cd06836	379	cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyri	4e-04

>gnl|CDD|219729 pfam08148, DSHCT, DSHCT (NUC185) domain

 Score =  112 bits (283), Expect = 7e-31
 Identities = 42/113 (37%), Positives = 70/113 (61%), Gaps = 4/113 (3%)

Query: 142 INSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKT-TTPT 200
           I+  G+V LKG +ACE+ S++ELL+TELLF     +  PEE+AALLS  VF+ +      
Sbjct: 1   IDDDGVVTLKGRVACEISSEDELLLTELLFSGFFNDLDPEELAALLSAFVFEERRDDEGY 60

Query: 201 ELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
                L + ++ + ++  ++  +E++HG++  +  E     +FGL++VVYEWA
Sbjct: 61  PPSLELAEALNRLLEIARKLAKVEREHGLDEPEYVER---FDFGLMEVVYEWA 110

This C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases. Length = 178

>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]

 Score = 93.2 bits (232), Expect = 2e-21
 Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 10/160 (6%)

Query: 100 HIYKRKEDHNRLSELKHLLSHKGMSLY--ADYDSKVKVLQELNYINSQGIVQLKGNIACE 157
            I       +  +E++ L S    +L    DY +  +VL++L +I    +V +KG +A E
Sbjct: 818 LIENELLLSDLQAEIEDL-SSSIEALSFLDDYKTLQEVLKKLGFIEDNAVVLIKGRVAAE 876

Query: 158 MGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPT----ELPESLKQGMSII 213
           + S++ELL+TEL+F  +  +  PEE+AALLS  VF+ KT   T    E+  +L+  +  +
Sbjct: 877 ISSEDELLLTELIFSGEFNDLEPEELAALLSAFVFEEKTDDGTAEAPEITPALRDALLRL 936

Query: 214 ADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
            ++  ++   +    +E      E ++ + GL++VVYEWA
Sbjct: 937 LELARKLNKDQNSSQIE---IYPELNDFSVGLMEVVYEWA 973

Length = 1041

>gnl|CDD|143505 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 23/92 (25%)

Query: 133 VKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVF 192
           V VL+ L           +     E+ S  EL +           F PE I       VF
Sbjct: 40  VPVLRLLA----------EAGAGAEVASPGELELALA------AGFPPERI-------VF 76

Query: 193 QSKTTTPTELPESLKQGMSIIADMNIEVESIE 224
            S   T  EL E+L+ G++I  D   E+E I+
Sbjct: 77  DSPAKTRAELREALELGVAINIDNFQELERID 108

This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity. Length = 379

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
KOG0948|consensus	1041		100.0
KOG0947|consensus	1248		100.0
PF08148	180	DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961	99.97
COG4581	1041	Superfamily II RNA helicase [DNA replication, reco	99.92
PF13234	268	rRNA_proc-arch: rRNA-processing arch domain; PDB:	97.26
PF04408	102	HA2: Helicase associated domain (HA2); InterPro: I	93.78
smart00847	92	HA2 Helicase associated domain (HA2) Add an annota	90.47
PRK11664	812	ATP-dependent RNA helicase HrpB; Provisional	88.69
TIGR01970	819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	81.16

>KOG0948|consensus

Probab=100.00  E-value=1.8e-41  Score=335.95  Aligned_cols=229  Identities=21%  Similarity=0.348  Sum_probs=195.7

Q ss_pred             hhhhhhccccccCCCCCCCCCCCCCCChHHHHHHHHHhhCCCCc------ccCCCCCChH----H---HHHHHHHHhcCC
Q psy13857         25 RRVLIFTDTTTPGPSVNASDPNSSDPPKPALYYQMLTLLTSDPV------MLGSLSMNHT----I---VNIQVQNIWGVV   91 (259)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~----~---~~~~~~~L~~hp   91 (259)
                      +.|..|.+..+-.|     .++.+..++...+..+.+....-|.      |+..-.+-+.    +   +..+..+|..||
T Consensus       733 ~~i~~is~~r~~iP-----~dl~~~d~r~~~~k~v~e~~~rfp~gip~LdPv~dM~I~~~~~~~~~~k~e~lE~~l~~hp  807 (1041)
T KOG0948|consen  733 TLIDAISSIRLYIP-----KDLRSVDARLSVLKAVQEVKSRFPDGIPLLDPVKDMNIKDVEFKKLVKKIESLEARLESHP  807 (1041)
T ss_pred             HHHhhhhHHHhcCc-----ccccCcchHHHHHHHHHHHHHhcCCCCCCcChhhccCccchHHHHHHHHHHHHHHhhccCc
Confidence            45555555555444     3556666677777777666532221      3333333321    1   355789999999


Q ss_pred             CCCCCChhh----HHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHH
Q psy13857         92 NTPILKFYH----IYKRKEDHNRLSELKHLLSH-KGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLI  166 (259)
Q Consensus        92 c~~c~~~~~----~~~~~~L~~ei~~L~~~i~~-~sl~l~~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLl  166 (259)
                      .|+.++.++    +.++..|..++.+++.++.. ++....+|+++|.+|||+|||++.++++.+||||||||+++|||++
T Consensus       808 ~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~ddvie~KGrvACEIsSgDELlL  887 (1041)
T KOG0948|consen  808 LHKSSELEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDDVIELKGRVACEISSGDELLL  887 (1041)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEcceEEEEecccchHHH
Confidence            999999888    55678899999999999997 6778999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCCCHHHHHHHHhhcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccCChhHH
Q psy13857        167 TELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLV  246 (259)
Q Consensus       167 TElLf~g~f~~L~P~elAAlLS~fV~e~r~~~~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~~~~~~~~~~~~~~Lm  246 (259)
                      |||||+|.|++|+|+|+||+|||||||+++.+.+.+.++|..++..|++.|++|++++.+|+++++++ +|+++|+|.||
T Consensus       888 TEliFnG~Fndl~~eq~aaLLSCfVf~eks~e~~~l~~el~~~l~~lqe~ArrIAkVs~ecKlEide~-~Yv~sFkp~LM  966 (1041)
T KOG0948|consen  888 TELIFNGIFNDLPVEQAAALLSCFVFQEKSSEAPKLKEELAGPLRQLQESARRIAKVSKECKLEIDEE-DYVESFKPELM  966 (1041)
T ss_pred             HHHHHhccccCCCHHHHHHHHhheeehhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccccCHH-HHHHhcChHHH
Confidence            99999999999999999999999999999998899999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHhhCCCCCC
Q psy13857        247 QVVYEWAMQKPHW  259 (259)
Q Consensus       247 ~vVy~WA~G~sF~  259 (259)
                      +|||+||+|++|.
T Consensus       967 dvVy~W~~GatF~  979 (1041)
T KOG0948|consen  967 DVVYAWAKGATFA  979 (1041)
T ss_pred             HHHHHHHccccHH
Confidence            9999999999983

>KOG0947|consensus

Probab=100.00  E-value=5.1e-36  Score=302.71  Aligned_cols=212  Identities=34%  Similarity=0.515  Sum_probs=184.3

Q ss_pred             CCCChHHHH---HHHHHhhC----CCCc--ccCCCCC-ChHHH------HHHHHHHhcCCCCCCCChhh----HHHHHHH
Q psy13857         48 SDPPKPALY---YQMLTLLT----SDPV--MLGSLSM-NHTIV------NIQVQNIWGVVNTPILKFYH----IYKRKED  107 (259)
Q Consensus        48 ~~~~~~~~~---~~~~~~~~----~~p~--~~~~~~~-~~~~~------~~~~~~L~~hpc~~c~~~~~----~~~~~~L  107 (259)
                      .++++.++-   ++++..++    ++|.  |....+. +++++      +.+.+.+.+.||+.||+|++    ++++.+.
T Consensus       955 ~D~~~aal~~~~~~~l~l~~~~~~~~~~~epv~~~k~kd~e~~~~~l~~~n~~~~~~~~~~i~c~~f~~h~s~~~~~~~~ 1034 (1248)
T KOG0947|consen  955 ADGQKAALNESTAQVLDLLEGSLETPTWKEPVNDSKLKDDEVVEMLLERTNLQNLIQGNPCISCPKFDQHYSLARREYKI 1034 (1248)
T ss_pred             cccHHHHHHHHHHHhhhhhhcCccCcchhhhhhhhhhccHHHHHHHHHHHHHHHHHhcCCccCCccHHHHHHHHHHHHHH
Confidence            356666665   44555553    3444  2222222 23332      23467788999999999999    6788999


Q ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHH
Q psy13857        108 HNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALL  187 (259)
Q Consensus       108 ~~ei~~L~~~i~~~sl~l~~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlL  187 (259)
                      +.++++|+.+++.+++.+.++|.+|++||+.+||||+.++|++|||+||||++++|||+|||||+|.|.+|+|+|+||+|
T Consensus      1035 ~~ei~~L~~~~sd~~L~l~pey~~RlevLk~~g~vD~~~~V~lkGRvAceI~s~~ELllteli~dn~l~~l~peeiaall 1114 (1248)
T KOG0947|consen 1035 EKEIENLEFELSDQSLLLSPEYHNRLEVLKPLGFVDEMRTVLLKGRVACEINSGNELLLTELIFDNALVDLSPEEIAALL 1114 (1248)
T ss_pred             HHHhhhhhhhhhhhhhhhCHHHHHHHHHHhhcCcccccceeeecceeeeeecCCcchhHHHHHHhhhhhhcCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccCChhHHHHHHHhhCCCCCC
Q psy13857        188 SCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKPHW  259 (259)
Q Consensus       188 S~fV~e~r~~~~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~~~~~~~~~~~~~~Lm~vVy~WA~G~sF~  259 (259)
                      |+||||++....+.+++.+.++-+++.++++++.+++..|++.++++++|.+.++|+||+|||+||+|+||.
T Consensus      1115 SslV~e~~~e~~~~~~~~l~k~~e~v~~v~~rl~ev~~~~~~~~~~~e~f~~~lrF~l~evVYeWA~G~sf~ 1186 (1248)
T KOG0947|consen 1115 SSLVCEGKTERPPTLTPYLKKGKERVRDVAKRLEEVQSSHQLLQTPEEEFPCELRFGLVEVVYEWARGLSFK 1186 (1248)
T ss_pred             HHHHhcCccccCCCCChhhhhHHHHHHHHHHHHHHHHHhhccccCchhhccccccccHHHHHHHHHcCCCHH
Confidence            999999998667889999999999999999999999999999998875678899999999999999999983

>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases []

Probab=99.97  E-value=1.2e-30  Score=224.84  Aligned_cols=114  Identities=35%  Similarity=0.726  Sum_probs=90.6

Q ss_pred             ccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhcccccCCCCC-CCC-c-hHHHHHHHHHHHHHH
Q psy13857        142 INSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTP-TEL-P-ESLKQGMSIIADMNI  218 (259)
Q Consensus       142 Id~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~r~~~~-~~l-~-~~L~~~~~~l~~ia~  218 (259)
                      ||++++||.|||+||+|+++|||++|||||+|+|++|+|+||||++||||||+++++. ... | +.+.++++++.++++
T Consensus         1 id~~~~vt~kGr~a~~I~~~~eLl~te~l~~g~f~~L~p~elAa~lS~~v~e~~~~~~~~~~~~~~~l~~~~~~l~~~~~   80 (180)
T PF08148_consen    1 IDEDNVVTLKGRVACEIYSEDELLLTELLFSGVFDDLDPAELAALLSCFVYEPRREDEEERYPPSPRLREALEQLQEIAE   80 (180)
T ss_dssp             B-TTS-BSHHHHHHCC--SSTHHHHHHHHHCTCCCCS-HHHHHHHHHHHC-----SS---------HHHHHHHHHHHHHH
T ss_pred             CCCCCccCHHHHHHHHHcCcccHHHHHHHHcCCCCCCCHHHHHHHHHHhhcccccCcccccccccHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999999999999998654 222 2 389999999999999


Q ss_pred             HHHHHHHHcCCCCCCCccccccCChhHHHHHHHhhCCCCC
Q psy13857        219 EVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWAMQKPH  258 (259)
Q Consensus       219 ~I~~ve~~~gl~~~~~~~~~~~~~~~Lm~vVy~WA~G~sF  258 (259)
                      +|.+++.+||+  +.+ +|.+.++|++|++||+||+|++|
T Consensus        81 ~l~~~~~~~~l--~~~-~~~~~~~~~l~~~v~~Wa~G~~~  117 (180)
T PF08148_consen   81 RLAKVEREHGL--DEE-EYVERFDPGLMEVVYAWASGASF  117 (180)
T ss_dssp             HHHHHHHHTT---HHH-HHHHCSTTTTHHHHHHHHCT--H
T ss_pred             HHHHHHHHhCC--CCc-ccccCCCccHHHHHHHHHCCCCH
Confidence            99999999999  444 78888899999999999999998

; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]

Probab=99.92  E-value=5.1e-25  Score=228.01  Aligned_cols=171  Identities=26%  Similarity=0.447  Sum_probs=155.3

Q ss_pred             HHHHHhcCCCCCCCChhh----HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhHcCcccCCCccchhhHHHhhh
Q psy13857         83 QVQNIWGVVNTPILKFYH----IYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEM  158 (259)
Q Consensus        83 ~~~~L~~hpc~~c~~~~~----~~~~~~L~~ei~~L~~~i~~~sl~l~~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI  158 (259)
                      +...+..+|.+.|+.+++    ......|.++++++.+.+  ....+.++|..+.++|+.+||++.+.++++|||+||+|
T Consensus       800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~--~~~~~l~~~~~l~~~l~~~g~~~~~~~v~~kGr~a~eI  877 (1041)
T COG4581         800 GRYHLSENPLMNFDGAERLIENELLLSDLQAEIEDLSSSI--EALSFLDDYKTLQEVLKKLGFIEDNAVVLIKGRVAAEI  877 (1041)
T ss_pred             cccccCCCccccchHHHHHHHhHhHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHhhcCCCcccccccccceeeee
Confidence            345666777788888888    345688999999999998  77889999999999999999999989999999999999


Q ss_pred             cCCchHHHHHHHhhCCCCCCCHHHHHHHHhhcccccCCC----CCCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy13857        159 GSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTT----TPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKS  234 (259)
Q Consensus       159 ~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~r~~----~~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~~~~  234 (259)
                      ++++|||+||||++|.|++|+|+++||++|||||+++++    +.+.+++.+++++..+.+++.+|.+++.++++++..+
T Consensus       878 ~s~~ellL~e~i~~g~f~~l~p~e~aallSa~v~e~~~~d~~~~~~~~~~~l~~~~~~l~e~~~kl~~~~~~~~i~~~~~  957 (1041)
T COG4581         878 SSEDELLLTELIFSGEFNDLEPEELAALLSAFVFEEKTDDGTAEAPEITPALRDALLRLLELARKLNKDQNSSQIEIYPE  957 (1041)
T ss_pred             cCCCchHHHHHHHcCCccCCCHHHHHHHHHheeeccCCcccccccccCCHHHHhHHHHHHHHHHHHHHHHHhcCCcCCcc
Confidence            999999999999999999999999999999999999986    3456789999999999999999999999999999864


Q ss_pred             ccccccCChhHHHHHHHhhCCCCC
Q psy13857        235 SEEADNLNFGLVQVVYEWAMQKPH  258 (259)
Q Consensus       235 ~~~~~~~~~~Lm~vVy~WA~G~sF  258 (259)
                         .+.+.+++|++||.||+|++|
T Consensus       958 ---l~~~~~~lm~vv~~wa~g~s~  978 (1041)
T COG4581         958 ---LNDFSVGLMEVVYEWARGLSF  978 (1041)
T ss_pred             ---cccccccHHHHHHHHHhhcch
Confidence               678899999999999999887

>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A

Probab=97.26  E-value=0.00045  Score=62.85  Aligned_cols=95  Identities=11%  Similarity=0.105  Sum_probs=60.9

Q ss_pred             eehhhhhhhhccccccCCCCCCCCCCCCCCChHHHHHHHHHhhCC----CCc--ccCCCCCChHH-------HHHHHHHH
Q psy13857         21 TIWCRRVLIFTDTTTPGPSVNASDPNSSDPPKPALYYQMLTLLTS----DPV--MLGSLSMNHTI-------VNIQVQNI   87 (259)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~--~~~~~~~~~~~-------~~~~~~~L   87 (259)
                      .+=.+.|..|+...+.+|     .+..+..-.+...+++.+....    -|+  |.+..++.+.-       +..+.++|
T Consensus       156 ~v~l~~I~~ISs~rl~lp-----~dl~~~~~r~~~~~~l~el~~r~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl  230 (268)
T PF13234_consen  156 PVPLSCISSISSVRLKLP-----KDLRPQEARKQVLKSLQELLKRFPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRL  230 (268)
T ss_dssp             EEECCGEEEEEEEE---------TTTTSCCCHHHHHHHHHHHHHHSSS--TCHHCHHHH----HHHHHHHHHHHHHHHHH
T ss_pred             EeeHHHHHHhhceeeeCc-----ccccchHHHHHHHHHHHHHHHhCCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence            444578899999999988     1234444466666666554422    233  44445665422       23468899


Q ss_pred             hcCCCCCCCChhh----HHHHHHHHHHHHHHHHHHhh
Q psy13857         88 WGVVNTPILKFYH----IYKRKEDHNRLSELKHLLSH  120 (259)
Q Consensus        88 ~~hpc~~c~~~~~----~~~~~~L~~ei~~L~~~i~~  120 (259)
                      .+||||.||++++    ++++..|+++++.|++++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l~~  267 (268)
T PF13234_consen  231 SSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQLSD  267 (268)
T ss_dssp             HHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999    67889999999999999874

>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length

Probab=93.78  E-value=0.068  Score=41.67  Aligned_cols=44  Identities=16%  Similarity=0.254  Sum_probs=30.0

Q ss_pred             HHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCC
Q psy13857        133 VKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVN  177 (259)
Q Consensus       133 ~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~  177 (259)
                      ++.|+.+|.||+++.+|..|+.++++-. +.-+---+++...|.-
T Consensus         3 ~~~L~~Lgald~~~~lT~lG~~~~~lPl-~p~~a~~Ll~~~~~~~   46 (102)
T PF04408_consen    3 LELLKSLGALDENGNLTPLGRKMSQLPL-DPRLAKMLLYGIQFGC   46 (102)
T ss_dssp             HHHHHHTTSB-TTS-B-HHHHHHTTSSS--HHHHHHHHHHHHCT-
T ss_pred             HHHHHHCCCCCCCCCcCHHHHHHHHCCC-chHhHhHhhhcccccc
Confidence            4679999999999999999999999987 5544444455544444

It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.

>smart00847 HA2 Helicase associated domain (HA2) Add an annotation

Probab=90.47  E-value=0.82  Score=34.24  Aligned_cols=60  Identities=18%  Similarity=0.243  Sum_probs=42.5

Q ss_pred             HHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhccccc
Q psy13857        133 VKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQS  194 (259)
Q Consensus       133 ~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~  194 (259)
                      ++.|..+|.||.++.+|..|+..+++-. +.-+ +-+|..+...+=-..++++++|.+..+.
T Consensus         3 ~~~L~~LgAld~~~~lT~lG~~m~~lPl-~Prl-a~~Ll~a~~~~~c~~~~~~i~a~ls~~~   62 (92)
T smart00847        3 LELLYELGALDDDGRLTPLGRKMAELPL-DPRL-AKMLLAAAELFGCLDEILTIAAMLSVGD   62 (92)
T ss_pred             HHHHHHCCCcCCCCCcCHHHHHHHHCCC-ChHH-HHHHHHHHhhcCcHHHHHHHHHHhcCCC
Confidence            4689999999999999999999999977 4433 4444444322114577788887776543

This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional

Probab=88.69  E-value=2.5  Score=44.72  Aligned_cols=66  Identities=20%  Similarity=0.258  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhccccc
Q psy13857        127 ADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQS  194 (259)
Q Consensus       127 ~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~  194 (259)
                      ..+.+-+..|+.+|.||.++.+|..||..+++-. +.-+-.-+|....|. -..-.+||.++++..+.
T Consensus       384 ~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~-~Prla~~ll~a~~~~-~~~l~~a~~laall~e~  449 (812)
T PRK11664        384 AALAAAKRLLQQLGALDGQGRLTARGRKMAALGN-DPRLAAMLVAAKEDD-EAALATAAKLAAILEEP  449 (812)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCC-chHHHHHHHHHHhcC-chhhHHHHHHHHhhccC
Confidence            4788899999999999999999999999999976 655555555554443 11113688888877654

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB

Probab=81.16  E-value=3  Score=44.23  Aligned_cols=49  Identities=20%  Similarity=0.293  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCC
Q psy13857        127 ADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLV  176 (259)
Q Consensus       127 ~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~  176 (259)
                      ..+.+-+..|+.||.||.++.+|..|+..+++-. +.-+--.+|..-.|.
T Consensus       381 ~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~-~p~l~~~ll~~~~~~  429 (819)
T TIGR01970       381 VALAAARQLLQRLGALDAQGRLTAHGKAMAALGC-HPRLAAMLLSAHSTG  429 (819)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCC-CHHHHHHHHHhhhcC
Confidence            4678889999999999999999999999999987 554444444444443

This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
4a4z_A	997	Crystal Structure Of The S. Cerevisiae Dexh Helicas		7e-20
3l9o_A	1108	Crystal Structure Of Mtr4, A Co-Factor Of The Nucle		9e-15
2xgj_A	1010	Structure Of Mtr4, A Dexh Helicase Involved In Nucl		1e-14

>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 8/157 (5%)
Query: 100 HIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMG 159
           H+ K+K     + EL HL+S + +SL  DY+ ++ VL++  +I+    V LKG +ACE+ 
Sbjct: 778 HVIKKK-----IEELYHLMSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEIN 832
Query: 160 SKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTT--TPTELPESLKQGMSIIADMN 217
           S  EL++TEL+  N L +F PEEI ALLS  V++ KT    P  +   L +G   I ++ 
Sbjct: 833 SGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIY 892
Query: 218 IEVESIEKKHGVERDKSSEE-ADNLNFGLVQVVYEWA 253
            ++  +   H +   +   E  D   F ++ VVYEWA
Sbjct: 893 KKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWA 929

>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 97   KFYHIYKRKED-HNRLSELKHLLSH-KGMSLYADYDSKVKVLQELNYINSQGIVQLKGNI 154
            + Y  Y RK D H  + +LK  +S  + +    D   + +VL+ L +     I++LKG +
Sbjct: 883  ELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRV 942
Query: 155  ACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIA 214
            ACE+ S +ELL+TEL+F        PE+ AALLSC  FQ +      L   L + +  + 
Sbjct: 943  ACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMR 1002
Query: 215  DMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
            ++  ++  I K   +E     +  ++    L++VVYEW 
Sbjct: 1003 EIAAKIAKIMKDSKIEV-VEKDYVESFRHELMEVVYEWC 1040

>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
Query: 97  KFYHIYKRKED-HNRLSELKHLLSH-KGMSLYADYDSKVKVLQELNYINSQGIVQLKGNI 154
           + Y  Y RK D H  + +LK  +S  + +    D   + +VL+ L +     I++LKG +
Sbjct: 785 ELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRV 844
Query: 155 ACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIA 214
           ACE+ S +ELL+TEL+F        PE+ AALLSC  FQ +      L   L + +  + 
Sbjct: 845 ACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMR 904
Query: 215 DMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
           ++  ++  I K   +E     +  ++    L++VVYEW 
Sbjct: 905 EIAAKIAKIMKDSKIEV-VEKDYVESFRHELMEVVYEWC 942

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	2e-40
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	1e-39
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	4e-39
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997

 Score =  147 bits (372), Expect = 2e-40
 Identities = 53/161 (32%), Positives = 86/161 (53%), Gaps = 4/161 (2%)

Query: 97  KFYHIYKRKED-HNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIA 155
           +      +      ++ EL HL+S + +SL  DY+ ++ VL++  +I+    V LKG +A
Sbjct: 769 QHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVA 828

Query: 156 CEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTT--TPTELPESLKQGMSII 213
           CE+ S  EL++TEL+  N L +F PEEI ALLS  V++ KT    P  +   L +G   I
Sbjct: 829 CEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRI 888

Query: 214 ADMNIEVESIEKKHGVERDKSSEE-ADNLNFGLVQVVYEWA 253
            ++  ++  +   H +   +   E  D   F ++ VVYEWA
Sbjct: 889 EEIYKKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWA 929

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010

 Score =  145 bits (366), Expect = 1e-39
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 3/159 (1%)

Query: 97  KFYHIYKRKED-HNRLSELKHLLSH-KGMSLYADYDSKVKVLQELNYINSQGIVQLKGNI 154
           + Y  Y RK D H  + +LK  +S  + +    D   + +VL+ L +     I++LKG +
Sbjct: 785 ELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRV 844

Query: 155 ACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIA 214
           ACE+ S +ELL+TEL+F        PE+ AALLSC  FQ +      L   L + +  + 
Sbjct: 845 ACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMR 904

Query: 215 DMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
           ++  ++  I K   +E     +  ++    L++VVYEW 
Sbjct: 905 EIAAKIAKIMKDSKIEVV-EKDYVESFRHELMEVVYEWC 942

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108

 Score =  143 bits (362), Expect = 4e-39
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 3/159 (1%)

Query: 97   KFYHIYKRKED-HNRLSELKHLLSH-KGMSLYADYDSKVKVLQELNYINSQGIVQLKGNI 154
            + Y  Y RK D H  + +LK  +S  + +    D   + +VL+ L +     I++LKG +
Sbjct: 883  ELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRV 942

Query: 155  ACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIA 214
            ACE+ S +ELL+TEL+F        PE+ AALLSC  FQ +      L   L + +  + 
Sbjct: 943  ACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMR 1002

Query: 215  DMNIEVESIEKKHGVERDKSSEEADNLNFGLVQVVYEWA 253
            ++  ++  I K   +E     +  ++    L++VVYEW 
Sbjct: 1003 EIAAKIAKIMKDSKIEVV-EKDYVESFRHELMEVVYEWC 1040

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 43/246 (17%), Positives = 84/246 (34%), Gaps = 62/246 (25%)

Query: 37  GPSVNASDPNSSDPPKPALYYQM--LTL---LTSDPVMLGSLSMNHTIVNIQVQNIWGVV 91
           G +  A D   S   +  + +++  L L    + + V+     + + I            
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 92  NTPILKFYHIYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLK 151
           N  +        R       +EL+ LL  K       Y      L  L  + +       
Sbjct: 222 NIKL--------RIHSIQ--AELRRLLKSK------PY---ENCLLVLLNVQNAKAWN-A 261

Query: 152 GNIACEMGSKNELLIT---------------ELLFQNKLVNFTPEEIAALLS-CLVFQSK 195
            N++C++     LL T                +   +  +  TP+E+ +LL   L     
Sbjct: 262 FNLSCKI-----LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL----- 311

Query: 196 TTTPTELPESLKQG----MSIIADMNIE-VESIEK-KHGVERDKSSE--EA--DNLNFGL 245
              P +LP  +       +SIIA+   + + + +  KH V  DK +   E+  + L    
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAE 370

Query: 246 VQVVYE 251
            + +++
Sbjct: 371 YRKMFD 376

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 5e-04
 Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 65/214 (30%)

Query: 74  SMNHTIVNIQVQNIWGVVNTPILKFYHIYKRKEDHNRLSE-LKHLLSHK-----GM---- 123
           SM   +   Q   ++      +   Y++  R + + +L + L  L   K     G+    
Sbjct: 106 SMMTRMYIEQRDRLYNDN--QVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 124 ------SLYADY---------------------DSKVKVLQELNYINSQGIVQLKGNIAC 156
                  +   Y                     ++ +++LQ+L Y           + + 
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 157 EMGSKNEL------LITELLFQNKL-----VNFTPEEIAAL-LSC--LVFQSKTTTPTEL 202
                + +      L+    ++N L     V    +   A  LSC  L+    TT   ++
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILL----TTRFKQV 277

Query: 203 PESLKQGMSIIADMNIEVESIEKKHGVERDKSSE 236
            + L       A     +        +  D+   
Sbjct: 278 TDFLS------AATTTHISLDHHSMTLTPDEVKS 305

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	100.0
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	100.0
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	100.0
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	85.78
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	80.48

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A

Probab=100.00  E-value=1e-44  Score=377.18  Aligned_cols=180  Identities=31%  Similarity=0.505  Sum_probs=155.5

Q ss_pred             HHHHHHHHhcCCCCCCCChhh----HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhHcCcccCCCccchhhHHH
Q psy13857         80 VNIQVQNIWGVVNTPILKFYH----IYKRKEDHNRLSELKHLLSHKGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIA  155 (259)
Q Consensus        80 ~~~~~~~L~~hpc~~c~~~~~----~~~~~~L~~ei~~L~~~i~~~sl~l~~ef~~~~~VLr~LgYId~~~~vT~KGRvA  155 (259)
                      ++.+++++.+||||.||++++    ++++.+++++++.++++++.+++.++++|+++++||++|||||.+++||+|||||
T Consensus       749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a  828 (997)
T 4a4z_A          749 RTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVA  828 (997)
T ss_dssp             HHHHHHC------------CCSHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHTTSBCTTCCBCHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCcCCCCcccHHhHHH
Confidence            456788999999999999999    6788999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhcccccCC--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy13857        156 CEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKT--TTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDK  233 (259)
Q Consensus       156 ~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~r~--~~~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~~~  233 (259)
                      |||++++||++|||||+|+|++|+|+||||+|||||||+|+  ++.|.+++.|.+++.++.++|++|++++.+|+++++.
T Consensus       829 ~~i~~~~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~  908 (997)
T 4a4z_A          829 CEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQ  908 (997)
T ss_dssp             TTCCSSCHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCCCCSSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             hhhcCccHHHHHHHHHhCcccCCCHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence            99999999999999999999999999999999999999998  4557789999999999999999999999999999864


Q ss_pred             C-ccccccCChhHHHHHHHhhCCCCCC
Q psy13857        234 S-SEEADNLNFGLVQVVYEWAMQKPHW  259 (259)
Q Consensus       234 ~-~~~~~~~~~~Lm~vVy~WA~G~sF~  259 (259)
                      + ++|++.|+|+||+|||+||+|+||.
T Consensus       909 ~~~~~~~~~~~~l~~~v~~Wa~g~~f~  935 (997)
T 4a4z_A          909 DEAEFLDRKRFAMMNVVYEWARGLSFK  935 (997)
T ss_dssp             HHHHGGGSCTTTTHHHHHHHHHTCCHH
T ss_pred             chhhhccCCChHHHHHHHHHhCCCCHH
Confidence            3 3899999999999999999999983

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-44  Score=372.22  Aligned_cols=229  Identities=21%  Similarity=0.393  Sum_probs=195.9

Q ss_pred             hhhhhhccccccCCCCCCCCCCCCCCChHHHHHHHHHh---hC-CCCc--ccCCCCCChHH-------HHHHHHHHhcCC
Q psy13857         25 RRVLIFTDTTTPGPSVNASDPNSSDPPKPALYYQMLTL---LT-SDPV--MLGSLSMNHTI-------VNIQVQNIWGVV   91 (259)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~p~--~~~~~~~~~~~-------~~~~~~~L~~hp   91 (259)
                      +.|..|+...+.+|.-     ..++...+.+...+.+.   .. ..|.  |.+..++.+..       ++.++++|.+||
T Consensus       702 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  776 (1010)
T 2xgj_A          702 DSIKSIGNLRLYMPKD-----IRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNP  776 (1010)
T ss_dssp             GGEEEEEEEECCCCSS-----TTCSSSHHHHHHHHHHHHHHSSSCCCBCCTTTTSCCCCHHHHHHHHHHHHHHHHHTTSH
T ss_pred             hhcceeeeeeEecccc-----cCChHHHHHHHHHHHHHHHhcccCCcccCchhhhccccHHHHHHHHHHHHHHHHHHhCC
Confidence            3466777767777742     34555566666555333   32 2233  45555655321       355789999999


Q ss_pred             CCCCCChhh----HHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHH
Q psy13857         92 NTPILKFYH----IYKRKEDHNRLSELKHLLSH-KGMSLYADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLI  166 (259)
Q Consensus        92 c~~c~~~~~----~~~~~~L~~ei~~L~~~i~~-~sl~l~~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLl  166 (259)
                      ||.||++++    ++++.+++++++.+++++++ +++.++++|+++++||++|||||++++||+|||+||+|+++||||+
T Consensus       777 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~el~~  856 (1010)
T 2xgj_A          777 LTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLL  856 (1010)
T ss_dssp             HHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCCCcccHHHHHHHHhcCccHHHH
Confidence            999999999    56778999999999999999 8888999999999999999999988999999999999999999999


Q ss_pred             HHHHhhCCCCCCCHHHHHHHHhhcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccCChhHH
Q psy13857        167 TELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKSSEEADNLNFGLV  246 (259)
Q Consensus       167 TElLf~g~f~~L~P~elAAlLS~fV~e~r~~~~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~~~~~~~~~~~~~~Lm  246 (259)
                      |||||+|+|++|+|+||||+|||||||+|+++.|.+|+.|.++++.++++|++|++++.+|+++++.+ +|++.|+|+||
T Consensus       857 ~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  935 (1010)
T 2xgj_A          857 TELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEK-DYVESFRHELM  935 (1010)
T ss_dssp             HHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH-HHHHTSCCTTH
T ss_pred             HHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChh-HhcccCChHHH
Confidence            99999999999999999999999999999888899999999999999999999999999999999876 99999999999


Q ss_pred             HHHHHhhCCCCCC
Q psy13857        247 QVVYEWAMQKPHW  259 (259)
Q Consensus       247 ~vVy~WA~G~sF~  259 (259)
                      +|||+||+|++|.
T Consensus       936 ~~v~~Wa~g~~~~  948 (1010)
T 2xgj_A          936 EVVYEWCRGATFT  948 (1010)
T ss_dssp             HHHHHHTTTCCHH
T ss_pred             HHHHHHhCCCCHH
Confidence            9999999999983

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-43  Score=370.67  Aligned_cols=179  Identities=25%  Similarity=0.490  Sum_probs=149.3

Q ss_pred             HHHHHHHHhcCCCCCCCChhh----HHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhHcCcccCCCccchhhHH
Q psy13857         80 VNIQVQNIWGVVNTPILKFYH----IYKRKEDHNRLSELKHLLSH-KGMSLYADYDSKVKVLQELNYINSQGIVQLKGNI  154 (259)
Q Consensus        80 ~~~~~~~L~~hpc~~c~~~~~----~~~~~~L~~ei~~L~~~i~~-~sl~l~~ef~~~~~VLr~LgYId~~~~vT~KGRv  154 (259)
                      ++.++++|.+||||.||++++    ++++.+|++++++++++++. .++.++++|+++++||++|||||.+++||+||||
T Consensus       863 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~  942 (1108)
T 3l9o_A          863 IDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRV  942 (1108)
T ss_dssp             HHHHHHHHHHSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCTTTCCCSHHHHH
T ss_pred             HHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcCCCCcCcHHhHH
Confidence            345789999999999999999    67889999999999999998 7888999999999999999999999999999999


Q ss_pred             HhhhcCCchHHHHHHHhhCCCCCCCHHHHHHHHhhcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy13857        155 ACEMGSKNELLITELLFQNKLVNFTPEEIAALLSCLVFQSKTTTPTELPESLKQGMSIIADMNIEVESIEKKHGVERDKS  234 (259)
Q Consensus       155 A~eI~s~dELLlTElLf~g~f~~L~P~elAAlLS~fV~e~r~~~~~~l~~~L~~~~~~l~~ia~~I~~ve~~~gl~~~~~  234 (259)
                      ||+|+++||||+|||||+|+|++|+|+||||+|||||||+|+++.|.+++.|.+++.+++++|++|++++.+||++++.+
T Consensus       943 a~~i~~~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 1022 (1108)
T 3l9o_A          943 ACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEK 1022 (1108)
T ss_dssp             HHC-CCTTHHHHHHHHHHHCCCSSCCTHHHHHTCC------------------CHHHHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHhcCccHHHHHHHHHhCcccCCCHHHHHHHHhheeeecccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChH
Confidence            99999999999999999999999999999999999999999988888999999999999999999999999999999876


Q ss_pred             ccccccCChhHHHHHHHhhCCCCCC
Q psy13857        235 SEEADNLNFGLVQVVYEWAMQKPHW  259 (259)
Q Consensus       235 ~~~~~~~~~~Lm~vVy~WA~G~sF~  259 (259)
                       +|++.|+|+||+|||+||+|++|.
T Consensus      1023 -~~~~~~~~~l~~~v~~Wa~g~~f~ 1046 (1108)
T 3l9o_A         1023 -DYVESFRHELMEVVYEWCRGATFT 1046 (1108)
T ss_dssp             -HHHHHHCCSCHHHHHHHHC----C
T ss_pred             -HhccCCChHHHHHHHHHhCCCCHH
Confidence             899999999999999999999995

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}

Probab=85.78  E-value=0.78  Score=40.74  Aligned_cols=61  Identities=18%  Similarity=0.225  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCH-HHHHHHHh
Q psy13857        127 ADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTP-EEIAALLS  188 (259)
Q Consensus       127 ~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P-~elAAlLS  188 (259)
                      +...+-++.|..||.||+++.+|.-||..+++-. +.-+--.+|....|.-+++ --|||+||
T Consensus        18 ~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl-~P~lakmLl~a~~~~c~~~~l~iaA~Ls   79 (270)
T 3i4u_A           18 ETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL-EPMLCKMLIMSVHLGCSEEMLTIVSMLS   79 (270)
T ss_dssp             HHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCS-CHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCC-CHHHHHHHHHhhhcCCHHHHHHHHHHHC
Confidence            4566778899999999999999999999999987 5544444444445544433 23444554

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=80.48  E-value=1.8  Score=43.74  Aligned_cols=62  Identities=18%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHhHcCcccCCCccchhhHHHhhhcCCchHHHHHHHhhCCCCCCCH-HHHHHHHh
Q psy13857        126 YADYDSKVKVLQELNYINSQGIVQLKGNIACEMGSKNELLITELLFQNKLVNFTP-EEIAALLS  188 (259)
Q Consensus       126 ~~ef~~~~~VLr~LgYId~~~~vT~KGRvA~eI~s~dELLlTElLf~g~f~~L~P-~elAAlLS  188 (259)
                      ...+.+-++.|..+|.||+++.+|..||.++++.. +.-+--.++....|.-+++ -.|||+||
T Consensus       488 ~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl-~p~~~~~l~~~~~~~c~~~~l~i~a~ls  550 (773)
T 2xau_A          488 PETMMRALEELNYLACLDDEGNLTPLGRLASQFPL-DPMLAVMLIGSFEFQCSQEILTIVAMLS  550 (773)
T ss_dssp             HHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSS-CHHHHHHHHHGGGGTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCcccCCCcChhhhhhccccC-CHHHHHHHHhhcccCchhHHHHHHHhcc
Confidence            45678889999999999999999999999999998 5555555555555543333 33444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00