Psyllid ID: psy13858

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDFRWE
Secondary Structure (PSIPRED)
ccEEEcccHHHHHHHHHHHcccEEEEEEccccccccEEEEEEccccccccEEEEEcccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHcccccEEEEEccccccccEEEEEEccccccccEEEEEcccccEcccccEEcc
Coil and Loop (DISEMBL)
mlsatvpntLEFADWVGNTKKTKVYVVSTlkrpvplkhflyvgpvlekNQLFLIREAEgefltrgdfrwe
Flexible Loop (DISEMBL)
mlsatvpntlefadwvgntkkTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAegefltrgdfrwe
Low Complexity Region (SEG)
MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDFRWE
Disordered region (IsUnstruct)
*******NTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGD****
Disordered Region (DISOPRED)
MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLT*******
Disordered Region (DISEMBL)
MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDFRWE
Disordered Region (DISPRO)
*LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDFRWE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDFRWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
Q15477	1246	Helicase SKI2W OS=Homo sa	yes	N/A	0.928	0.052	0.515	2e-14
O59801	1213	Putative ATP-dependent RN	yes	N/A	0.857	0.049	0.584	2e-14
P35207	1287	Antiviral helicase SKI2 O	yes	N/A	0.757	0.041	0.526	7e-10
Q23223	1026	mRNA transport homolog 4	no	N/A	0.814	0.055	0.433	4e-06
O13799	1030	Uncharacterized helicase	no	N/A	0.571	0.038	0.525	5e-06
O14232	1117	ATP-dependent RNA helicas	no	N/A	0.571	0.035	0.45	3e-05
P47047	1073	ATP-dependent RNA helicas	no	N/A	0.571	0.037	0.45	3e-05
Q9CZU3	1040	Superkiller viralicidic a	no	N/A	0.814	0.054	0.35	6e-05
P42285	1042	Superkiller viralicidic a	no	N/A	0.814	0.054	0.35	6e-05

>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 51/66 (77%), Gaps = 1/66 (1%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
           +LSATVPN LEFADW+G  K+ ++YV+ST+ RPVPL+H+L+ G   + + +LFL+ ++ G
Sbjct: 452 LLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRG 511

Query: 60  EFLTRG 65
            F T+G
Sbjct: 512 AFHTKG 517

Helicase; has ATPase activity. Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1 complex (PAF1C).
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -

>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 5/65 (7%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGE 60
           +LSATVPNT EFA WVG TKK  +YV+STLKRPVPL+H+L+V     K  +F I +  G 
Sbjct: 422 LLSATVPNTKEFASWVGRTKKKNIYVISTLKRPVPLEHYLWV-----KQNMFKIVDQHGR 476

Query: 61  FLTRG 65
           FL  G
Sbjct: 477 FLMDG 481

RNA helicase component of the SKI complex involved in 3'-mRNA degradation pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI2 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 4/57 (7%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG----PVLEKNQLFL 53
           +LSATVPNT EFA+W+G TK+  +YV+ST KRPVPL+  ++      PV+ +N  FL
Sbjct: 473 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFL 529

RNA helicase component of the SKI complex involved in 3'-mRNA degradation pathway. Represses dsRNA virus propagation by specifically blocking translation of viral mRNAs, perhaps recognizing the absence of CAP or poly(A). Essential for cell growth only in the presence of M1 replicon.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEF 61
           LSAT+PN  +FA WV + K+  V VV T  RP PL+H++Y  PV  +  ++ +   +GEF
Sbjct: 268 LSATIPNARQFAQWVASIKQQPVNVVYTDYRPTPLQHWIY--PVGGEG-MYEVVNVKGEF 324

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/40 (52%), Positives = 27/40 (67%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 41
           LSAT+PN L+FA W+    K   +VV T  RP PL+HF+Y
Sbjct: 268 LSATLPNALQFARWISEIHKQPCHVVYTDYRPTPLQHFIY 307

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 28/40 (70%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 41
           LSAT+PN ++FA+W+    +   +VV T  RP PL+H+L+
Sbjct: 341 LSATIPNAMQFAEWITKIHRQPCHVVYTDFRPTPLQHYLF 380

Component of the TRAMP complex which has a poly(A) RNA polymerase activity and is involved in a post-transcriptional quality control mechanism limiting inappropriate expression of genetic information. Polyadenylation is required for the degradative activity of the exosome on several of its nuclear RNA substrates (By similarity). Required for heterochromatic gene silencing at centromeric repeats by either exosome- or RNAi-mediated degradation of heterochromatic transcripts.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: -

>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 41
           LSAT+PN +EFA+W+        ++V T  RP PL+H+L+
Sbjct: 292 LSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF 331

ATP-dependent RNA helicase required for the 3'-end formation of 5.8S RNA. Cofactor for the exosome complex that unwinds secondary structure in pre-rRNA. Required for nucleocytoplasmic transport of mRNA. May serve as a chaperone which translocates or normalizes the structure of mRNAs in preparation for export. Component of the TRAMP complex which has a poly(A) RNA polymerase activity and is involved in a post-transcriptional quality control mechanism limiting inappropriate expression of genetic information. Polyadenylation is required for the degradative activity of the exosome on several of its nuclear RNA substrates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEF 61
           LSAT+PN  +FA+W+ +  K   +V+ T  RP PL+H+++       + L L+ +  G+F
Sbjct: 280 LSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPA---GGDGLHLVVDENGDF 336

May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEF 61
           LSAT+PN  +FA+W+ +  K   +V+ T  RP PL+H+++       + L L+ +  G+F
Sbjct: 282 LSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPA---GGDGLHLVVDENGDF 338

May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
156375784	950	predicted protein [Nematostella vectensi	0.928	0.068	0.636	3e-17
327266504	1273	PREDICTED: helicase SKI2W-like [Anolis c	0.928	0.051	0.636	4e-17
326428725	1363	ATP-dependent DEAD/H RNA helicase [Salpi	0.871	0.044	0.672	1e-16
194910220	1197	GG12404 [Drosophila erecta] gi|190656731	0.885	0.051	0.682	2e-16
387016320	1274	Helicase SKI2W-like [Crotalus adamanteus	0.928	0.051	0.621	2e-16
357617976	1252	hypothetical protein KGM_14675 [Danaus p	0.928	0.051	0.681	3e-16
195503022	1197	GE23923 [Drosophila yakuba] gi|194184579	0.885	0.051	0.666	4e-16
195331409	1197	GM23539 [Drosophila sechellia] gi|194121	0.885	0.051	0.666	4e-16
195573242	1197	GD18353 [Drosophila simulans] gi|1942005	0.885	0.051	0.666	4e-16
17933658	1197	twister, isoform A [Drosophila melanogas	0.942	0.055	0.632	5e-16

>gi|156375784|ref|XP_001630259.1| predicted protein [Nematostella vectensis] gi|156217276|gb|EDO38196.1| predicted protein [Nematostella vectensis]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/66 (63%), Positives = 53/66 (80%), Gaps = 1/66 (1%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
           +LSATVPNTLEFADW+G TK+ K+YV+ST KRPVPL+HFLY G   +  N+LFL+ +   
Sbjct: 173 LLSATVPNTLEFADWIGRTKRKKIYVISTAKRPVPLEHFLYTGNSNKTSNELFLLVDQHS 232

Query: 60  EFLTRG 65
           +FLTRG
Sbjct: 233 KFLTRG 238

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|327266504|ref|XP_003218045.1| PREDICTED: helicase SKI2W-like [Anolis carolinensis]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 55/66 (83%), Gaps = 1/66 (1%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
           +LSATVPNTLEFADW+G  K+ K+YV+STLKRPVPL+H+LY G   + +N+LFL+ +A G
Sbjct: 473 LLSATVPNTLEFADWIGRIKRKKIYVISTLKRPVPLEHYLYTGNSQKTQNELFLLVDARG 532

Query: 60  EFLTRG 65
            FLT+G
Sbjct: 533 TFLTKG 538

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326428725|gb|EGD74295.1| ATP-dependent DEAD/H RNA helicase [Salpingoeca sp. ATCC 50818]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/61 (67%), Positives = 49/61 (80%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGE 60
           MLSATVPNT EFADWVG T+K +VYV+ T KRPVPL+HFLYVG V + + LF I +A G+
Sbjct: 575 MLSATVPNTFEFADWVGRTRKQRVYVIHTPKRPVPLEHFLYVGKVGKADPLFKIVDAHGK 634

Query: 61  F 61
           F
Sbjct: 635 F 635

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|194910220|ref|XP_001982093.1| GG12404 [Drosophila erecta] gi|190656731|gb|EDV53963.1| GG12404 [Drosophila erecta]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 52/63 (82%), Gaps = 1/63 (1%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP-VLEKNQLFLIREAEG 59
           MLSATVPNTLE ADWVG+TKK KVYV+STLKRPVPL HFLY G     ++ +FL+ +A+G
Sbjct: 404 MLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTGTGEKSRDDIFLLVDAQG 463

Query: 60  EFL 62
           +FL
Sbjct: 464 KFL 466

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|387016320|gb|AFJ50279.1| Helicase SKI2W-like [Crotalus adamanteus]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 54/66 (81%), Gaps = 1/66 (1%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
           +LSATVPNTLEFADW+G  K+ K+YV+STLKRPVPL+H+LY G   + + +LFL+ +A G
Sbjct: 474 LLSATVPNTLEFADWIGRIKRKKIYVISTLKRPVPLEHYLYTGNSQKTQKELFLLVDARG 533

Query: 60  EFLTRG 65
            FLT+G
Sbjct: 534 TFLTKG 539

Source: Crotalus adamanteus

Species: Crotalus adamanteus

Genus: Crotalus

Family: Viperidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|357617976|gb|EHJ71092.1| hypothetical protein KGM_14675 [Danaus plexippus]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/66 (68%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP-VLEKNQLFLIREAEG 59
           MLSATVPNTL+FADWVG TKK KVYVVST KRPVPL H+LY G     KN+ FL+ + EG
Sbjct: 448 MLSATVPNTLQFADWVGRTKKRKVYVVSTPKRPVPLCHYLYTGSGGKSKNERFLVVDQEG 507

Query: 60  EFLTRG 65
            F  RG
Sbjct: 508 AFQLRG 513

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195503022|ref|XP_002098478.1| GE23923 [Drosophila yakuba] gi|194184579|gb|EDW98190.1| GE23923 [Drosophila yakuba]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/63 (66%), Positives = 52/63 (82%), Gaps = 1/63 (1%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP-VLEKNQLFLIREAEG 59
           MLSATVPNTLE ADWVG+TKK KVYV+STLKRPVPL HFLY G     ++ +FL+ +A+G
Sbjct: 404 MLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTGAGGKSRDDMFLLVDAQG 463

Query: 60  EFL 62
           ++L
Sbjct: 464 KYL 466

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195331409|ref|XP_002032395.1| GM23539 [Drosophila sechellia] gi|194121338|gb|EDW43381.1| GM23539 [Drosophila sechellia]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/63 (66%), Positives = 52/63 (82%), Gaps = 1/63 (1%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP-VLEKNQLFLIREAEG 59
           MLSATVPNTLE ADWVG+TKK KVYV+STLKRPVPL HFLY G     ++ +FL+ +A+G
Sbjct: 404 MLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQG 463

Query: 60  EFL 62
           ++L
Sbjct: 464 KYL 466

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195573242|ref|XP_002104604.1| GD18353 [Drosophila simulans] gi|194200531|gb|EDX14107.1| GD18353 [Drosophila simulans]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/63 (66%), Positives = 52/63 (82%), Gaps = 1/63 (1%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP-VLEKNQLFLIREAEG 59
           MLSATVPNTLE ADWVG+TKK KVYV+STLKRPVPL HFLY G     ++ +FL+ +A+G
Sbjct: 404 MLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQG 463

Query: 60  EFL 62
           ++L
Sbjct: 464 KYL 466

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17933658|ref|NP_524465.1| twister, isoform A [Drosophila melanogaster] gi|442620708|ref|NP_001262884.1| twister, isoform B [Drosophila melanogaster] gi|16769288|gb|AAL28863.1| LD23303p [Drosophila melanogaster] gi|23172083|gb|AAF56187.2| twister, isoform A [Drosophila melanogaster] gi|220947190|gb|ACL86138.1| CG10210-PA [synthetic construct] gi|220956718|gb|ACL90902.1| tst-PA [synthetic construct] gi|440217804|gb|AGB96264.1| twister, isoform B [Drosophila melanogaster]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 56/68 (82%), Gaps = 2/68 (2%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP-VLEKNQLFLIREAEG 59
           MLSATVPNTLE ADWVG+TKK KVYV+STLKRPVPL HFLY G     ++ +FL+ +A+G
Sbjct: 404 MLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQG 463

Query: 60  EFLTRGDF 67
           ++L +G++
Sbjct: 464 KYL-QGNY 470

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
FB|FBgn0039117	1197	tst "twister" [Drosophila mela	0.942	0.055	0.632	9.7e-17
ZFIN|ZDB-GENE-010430-5	1249	skiv2l "superkiller viralicidi	0.928	0.052	0.530	6.6e-15
UNIPROTKB|F5H7B0	1053	SKIV2L "Helicase SKI2W" [Homo	0.928	0.061	0.515	7.9e-14
UNIPROTKB|F8VS23	1053	SKIV2L "Helicase SKI2W" [Homo	0.928	0.061	0.515	7.9e-14
UNIPROTKB|B4DM01	1088	SKIV2L "cDNA FLJ57529, highly	0.928	0.059	0.515	8.3e-14
UNIPROTKB|F8VNU1	1088	SKIV2L "Helicase SKI2W" [Homo	0.928	0.059	0.515	8.3e-14
UNIPROTKB|Q15477	1246	SKIV2L "Helicase SKI2W" [Homo	0.928	0.052	0.515	9.8e-14
UNIPROTKB|F1RQW4	1246	SKIV2L "Uncharacterized protei	0.928	0.052	0.515	9.8e-14
UNIPROTKB|F1LP39	1206	Skiv2l "Protein Skiv2l" [Rattu	0.928	0.053	0.515	1.2e-13
RGD|1303059	1241	Skiv2l "superkiller viralicidi	0.928	0.052	0.515	1.3e-13

FB|FBgn0039117 tst "twister" [Drosophila melanogaster (taxid:7227)]

 Score = 220 (82.5 bits), Expect = 9.7e-17, P = 9.7e-17
 Identities = 43/68 (63%), Positives = 56/68 (82%)

Query:     1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV-LEKNQLFLIREAEG 59
             MLSATVPNTLE ADWVG+TKK KVYV+STLKRPVPL HFLY G     ++ +FL+ +A+G
Sbjct:   404 MLSATVPNTLELADWVGSTKKRKVYVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQG 463

Query:    60 EFLTRGDF 67
             ++L +G++
Sbjct:   464 KYL-QGNY 470

GO:0004386 "helicase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0005634 "nucleus" evidence=IC

ZFIN|ZDB-GENE-010430-5 skiv2l "superkiller viralicidic activity 2 (S. cerevisiae homolog)-like" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 35/66 (53%), Positives = 52/66 (78%)

Query:     1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
             +LSATVPN +EF++W+G  KK  +YV+ST+KRPVPL+H+LY G   + + +LF++ +A G
Sbjct:   460 LLSATVPNAVEFSEWIGRIKKRHIYVISTIKRPVPLEHYLYTGNSTKTQKELFMLLDATG 519

Query:    60 EFLTRG 65
              FLT+G
Sbjct:   520 NFLTKG 525

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F5H7B0 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 192 (72.6 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/66 (51%), Positives = 51/66 (77%)

Query:     1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
             +LSATVPN LEFADW+G  K+ ++YV+ST+ RPVPL+H+L+ G   + + +LFL+ ++ G
Sbjct:   259 LLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRG 318

Query:    60 EFLTRG 65
              F T+G
Sbjct:   319 AFHTKG 324

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F8VS23 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 192 (72.6 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/66 (51%), Positives = 51/66 (77%)

Query:     1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
             +LSATVPN LEFADW+G  K+ ++YV+ST+ RPVPL+H+L+ G   + + +LFL+ ++ G
Sbjct:   259 LLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRG 318

Query:    60 EFLTRG 65
              F T+G
Sbjct:   319 AFHTKG 324

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|B4DM01 SKIV2L "cDNA FLJ57529, highly similar to Helicase SKI2W (EC 3.6.1.-)" [Homo sapiens (taxid:9606)]

 Score = 192 (72.6 bits), Expect = 8.3e-14, P = 8.3e-14
 Identities = 34/66 (51%), Positives = 51/66 (77%)

Query:     1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
             +LSATVPN LEFADW+G  K+ ++YV+ST+ RPVPL+H+L+ G   + + +LFL+ ++ G
Sbjct:   294 LLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRG 353

Query:    60 EFLTRG 65
              F T+G
Sbjct:   354 AFHTKG 359

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F8VNU1 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 192 (72.6 bits), Expect = 8.3e-14, P = 8.3e-14
 Identities = 34/66 (51%), Positives = 51/66 (77%)

Query:     1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
             +LSATVPN LEFADW+G  K+ ++YV+ST+ RPVPL+H+L+ G   + + +LFL+ ++ G
Sbjct:   294 LLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRG 353

Query:    60 EFLTRG 65
              F T+G
Sbjct:   354 AFHTKG 359

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q15477 SKIV2L "Helicase SKI2W" [Homo sapiens (taxid:9606)]

 Score = 192 (72.6 bits), Expect = 9.8e-14, P = 9.8e-14
 Identities = 34/66 (51%), Positives = 51/66 (77%)

Query:     1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
             +LSATVPN LEFADW+G  K+ ++YV+ST+ RPVPL+H+L+ G   + + +LFL+ ++ G
Sbjct:   452 LLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRG 511

Query:    60 EFLTRG 65
              F T+G
Sbjct:   512 AFHTKG 517

GO:0003723 "RNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0055087 "Ski complex" evidence=IDA

GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS

UNIPROTKB|F1RQW4 SKIV2L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 192 (72.6 bits), Expect = 9.8e-14, P = 9.8e-14
 Identities = 34/66 (51%), Positives = 51/66 (77%)

Query:     1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
             +LSATVPN LEFADW+G  K+ ++YV+ST+ RPVPL+H+L+ G   + + +LFL+ ++ G
Sbjct:   452 LLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRG 511

Query:    60 EFLTRG 65
              F T+G
Sbjct:   512 SFHTKG 517

GO:0055087 "Ski complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1LP39 Skiv2l "Protein Skiv2l" [Rattus norvegicus (taxid:10116)]

 Score = 191 (72.3 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 34/66 (51%), Positives = 51/66 (77%)

Query:     1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
             +LSATVPN LEFADW+G  K+ ++YV+ST+ RPVPL+H+L+ G   + + +LFL+ ++ G
Sbjct:   411 LLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRG 470

Query:    60 EFLTRG 65
              F T+G
Sbjct:   471 AFHTKG 476

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

RGD|1303059 Skiv2l "superkiller viralicidic activity 2-like (S. cerevisiae )" [Rattus norvegicus (taxid:10116)]

 Score = 191 (72.3 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 34/66 (51%), Positives = 51/66 (77%)

Query:     1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLE-KNQLFLIREAEG 59
             +LSATVPN LEFADW+G  K+ ++YV+ST+ RPVPL+H+L+ G   + + +LFL+ ++ G
Sbjct:   446 LLSATVPNALEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRG 505

Query:    60 EFLTRG 65
              F T+G
Sbjct:   506 AFHTKG 511

GO:0055087 "Ski complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15477	SKIV2_HUMAN	3, ., 6, ., 4, ., -	0.5151	0.9285	0.0521	yes	N/A
O59801	SKI2_SCHPO	3, ., 6, ., 4, ., -	0.5846	0.8571	0.0494	yes	N/A
P35207	SKI2_YEAST	3, ., 6, ., 4, ., 1, 3	0.5263	0.7571	0.0411	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	70
COG4581	1041	COG4581, COG4581, Superfamily II RNA helicase [DNA	5e-15
COG1204	766	COG1204, COG1204, Superfamily II helicase [General	9e-05
PRK01172	674	PRK01172, PRK01172, ski2-like helicase; Provisiona	8e-04

>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]

 Score = 67.0 bits (164), Expect = 5e-15
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGE 60
            LSATVPN  EFA+W+       ++VVST  RPVPL+HF+YVG       LF + + + +
Sbjct: 265 FLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG-----KGLFDLVDEKKK 319

Query: 61  FLT 63
           F  
Sbjct: 320 FNA 322

Length = 1041

>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only]

 Score = 37.7 bits (88), Expect = 9e-05
 Identities = 17/56 (30%), Positives = 22/56 (39%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREA 57
           LSAT+PN  E ADW+        +    L+R VP           +K    LI   
Sbjct: 186 LSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241

Length = 766

>gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional

 Score = 35.2 bits (81), Expect = 8e-04
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 11/52 (21%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFL 53
           LSATV N  E A W+  +      + S   RPVPLK    +G +L + +L L
Sbjct: 175 LSATVSNANELAQWLNAS-----LIKSNF-RPVPLK----LG-ILYRKRLIL 215

Length = 674

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
KOG0948|consensus	1041		99.93
KOG0947|consensus	1248		99.79
COG4581	1041	Superfamily II RNA helicase [DNA replication, reco	99.77
KOG0952|consensus	1230		98.67
COG1202	830	Superfamily II helicase, archaea-specific [General	98.59
COG1204	766	Superfamily II helicase [General function predicti	98.43
PRK02362	737	ski2-like helicase; Provisional	98.22
KOG0951|consensus	1674		98.08
PRK00254	720	ski2-like helicase; Provisional	98.04
KOG0950|consensus	1008		98.03
PRK01172	674	ski2-like helicase; Provisional	97.94
PRK09751	1490	putative ATP-dependent helicase Lhr; Provisional	96.01
COG1201	814	Lhr Lhr-like helicases [General function predictio	94.29
KOG0949|consensus	1330		94.23
TIGR03817	742	DECH_helic helicase/secretion neighborhood putativ	93.5
PRK13767	876	ATP-dependent helicase; Provisional	92.39
KOG0952|consensus	1230		82.45

>KOG0948|consensus

Probab=99.93  E-value=6.8e-27  Score=188.52  Aligned_cols=65  Identities=34%  Similarity=0.633  Sum_probs=63.3

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCcccccCcee
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDFR   68 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~~   68 (70)
                      |||||||||.|||+||+.+|+||||||+|+|||+||+||+|+.|+   +++|+|+|++|.|+++||.+
T Consensus       271 FLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~gg---dGlylvVDek~~FrednF~~  335 (1041)
T KOG0948|consen  271 FLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGG---DGLYLVVDEKGKFREDNFQK  335 (1041)
T ss_pred             EEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCC---CeeEEEEecccccchHHHHH
Confidence            799999999999999999999999999999999999999999998   99999999999999999964

>KOG0947|consensus

Probab=99.79  E-value=3.7e-20  Score=152.11  Aligned_cols=62  Identities=60%  Similarity=1.014  Sum_probs=58.8

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCcccccCce
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDF   67 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~   67 (70)
                      +|||||||+.|||+|||++|++.+.||+|.+|||||+||+|.+     ..++.|+|++|.|...+|+
T Consensus       439 lLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~-----~~l~kiidq~g~fl~~~~~  500 (1248)
T KOG0947|consen  439 LLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTK-----KSLFKIIDQNGIFLLKGIK  500 (1248)
T ss_pred             EEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEec-----cceehhhcccchhhhhcch
Confidence            6999999999999999999999999999999999999999997     4799999999999988775

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]

Probab=99.77  E-value=3.1e-19  Score=146.85  Aligned_cols=62  Identities=45%  Similarity=0.740  Sum_probs=59.3

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCcccccCce
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDF   67 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~   67 (70)
                      +|||||||+.|||+||+.+|+++|+||++++|||||+||++..     .++|.++|+++.|...||.
T Consensus       265 ~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~-----~~l~~lvde~~~~~~~~~~  326 (1041)
T COG4581         265 FLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG-----KGLFDLVDEKKKFNAENFP  326 (1041)
T ss_pred             EEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecC-----Cceeeeecccccchhhcch
Confidence            6999999999999999999999999999999999999999986     6999999999999998875

>KOG0952|consensus

Probab=98.67  E-value=1.7e-08  Score=84.59  Aligned_cols=45  Identities=27%  Similarity=0.266  Sum_probs=41.0

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCc
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV   45 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~   45 (70)
                      +||||+||.+|+|+||.......+.-+...||||||+..++...+
T Consensus       280 gLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~  324 (1230)
T KOG0952|consen  280 GLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKG  324 (1230)
T ss_pred             EeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeec
Confidence            599999999999999999877889999999999999988886654

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]

Probab=98.59  E-value=4.7e-08  Score=78.97  Aligned_cols=39  Identities=41%  Similarity=0.538  Sum_probs=35.0

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccce-eEEEeCCc
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLK-HFLYVGPV   45 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~-~~~~~~~~   45 (70)
                      .|||||+|++|+|.-+++      .+|..+.|||||+ |-+|.+++
T Consensus       377 ~LSATVgNp~elA~~l~a------~lV~y~~RPVplErHlvf~~~e  416 (830)
T COG1202         377 YLSATVGNPEELAKKLGA------KLVLYDERPVPLERHLVFARNE  416 (830)
T ss_pred             EEEeecCChHHHHHHhCC------eeEeecCCCCChhHeeeeecCc
Confidence            389999999999999999      8999999999999 66777654

>COG1204 Superfamily II helicase [General function prediction only]

Probab=98.43  E-value=1.5e-07  Score=76.40  Aligned_cols=37  Identities=43%  Similarity=0.564  Sum_probs=30.9

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeC
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG   43 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~   43 (70)
                      .||||+||++|+|+||++      ..+.+++|||||...++..
T Consensus       185 gLSATlpN~~evA~wL~a------~~~~~~~rp~~l~~~v~~~  221 (766)
T COG1204         185 GLSATLPNAEEVADWLNA------KLVESDWRPVPLRRGVPYV  221 (766)
T ss_pred             EEeeecCCHHHHHHHhCC------cccccCCCCcccccCCccc
Confidence            499999999999999999      4557788888888766653

>PRK02362 ski2-like helicase; Provisional

Probab=98.22  E-value=7.5e-07  Score=70.79  Aligned_cols=38  Identities=37%  Similarity=0.583  Sum_probs=33.1

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCC
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP   44 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~   44 (70)
                      +||||++|++++|+|++.      .++.+++|||||..+++..+
T Consensus       176 ~lSATl~n~~~la~wl~~------~~~~~~~rpv~l~~~v~~~~  213 (737)
T PRK02362        176 ALSATIGNADELADWLDA------ELVDSEWRPIDLREGVFYGG  213 (737)
T ss_pred             EEcccCCCHHHHHHHhCC------CcccCCCCCCCCeeeEecCC
Confidence            589999999999999987      46788999999998887543

>KOG0951|consensus

Probab=98.08  E-value=9.4e-07  Score=75.74  Aligned_cols=44  Identities=30%  Similarity=0.340  Sum_probs=37.9

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCc
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV   45 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~   45 (70)
                      +||||+||++|.|..|..-. ..++.+...||||||.+-++.-..
T Consensus       479 GLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~e  522 (1674)
T KOG0951|consen  479 GLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITE  522 (1674)
T ss_pred             eecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEecccc
Confidence            59999999999999998865 567888899999999987776554

>PRK00254 ski2-like helicase; Provisional

Probab=98.04  E-value=3.1e-06  Score=67.14  Aligned_cols=37  Identities=38%  Similarity=0.499  Sum_probs=31.3

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeC
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG   43 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~   43 (70)
                      +||||++|++++|+|++.      .++..++|||||...++..
T Consensus       174 ~lSATl~n~~~la~wl~~------~~~~~~~rpv~l~~~~~~~  210 (720)
T PRK00254        174 GLSATVGNAEELAEWLNA------ELVVSDWRPVKLRKGVFYQ  210 (720)
T ss_pred             EEEccCCCHHHHHHHhCC------ccccCCCCCCcceeeEecC
Confidence            589999999999999987      3567789999998766543

>KOG0950|consensus

Probab=98.03  E-value=1.9e-06  Score=71.87  Aligned_cols=39  Identities=41%  Similarity=0.755  Sum_probs=35.3

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCc
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV   45 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~   45 (70)
                      ++|||+||..++++|+.+      .+..+.+|||||..|+.++..
T Consensus       382 GMSATi~N~~lL~~~L~A------~~y~t~fRPv~L~E~ik~G~~  420 (1008)
T KOG0950|consen  382 GMSATIPNNSLLQDWLDA------FVYTTRFRPVPLKEYIKPGSL  420 (1008)
T ss_pred             eeecccCChHHHHHHhhh------hheecccCcccchhccCCCcc
Confidence            589999999999999998      788899999999999977643

>PRK01172 ski2-like helicase; Provisional

Probab=97.94  E-value=5.9e-06  Score=64.90  Aligned_cols=37  Identities=41%  Similarity=0.568  Sum_probs=31.6

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeC
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG   43 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~   43 (70)
                      +||||++|++++|+|++.      .++..++|||||+..++..
T Consensus       174 ~lSATl~n~~~la~wl~~------~~~~~~~r~vpl~~~i~~~  210 (674)
T PRK01172        174 ALSATVSNANELAQWLNA------SLIKSNFRPVPLKLGILYR  210 (674)
T ss_pred             EEeCccCCHHHHHHHhCC------CccCCCCCCCCeEEEEEec
Confidence            489999999999999987      4577899999999766543

>PRK09751 putative ATP-dependent helicase Lhr; Provisional

Probab=96.01  E-value=0.0095  Score=52.09  Aligned_cols=39  Identities=28%  Similarity=0.313  Sum_probs=28.8

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEee-cCCcccceeEEE
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVST-LKRPVPLKHFLY   41 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t-~~RPVPL~~~~~   41 (70)
                      +|||||+|++++|+||+..  ++|.++.. ..|+++|+.++.
T Consensus       164 gLSATI~n~eevA~~L~g~--~pv~Iv~~~~~r~~~l~v~vp  203 (1490)
T PRK09751        164 GLSATVRSASDVAAFLGGD--RPVTVVNPPAMRHPQIRIVVP  203 (1490)
T ss_pred             EEEeeCCCHHHHHHHhcCC--CCEEEECCCCCcccceEEEEe
Confidence            5899999999999999862  35555543 457778875543

>COG1201 Lhr Lhr-like helicases [General function prediction only]

Probab=94.29  E-value=0.037  Score=46.05  Aligned_cols=28  Identities=29%  Similarity=0.190  Sum_probs=22.9

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEee
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVST   29 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t   29 (70)
                      +|||||+|++++|.|+..... +|.+|.-
T Consensus       188 GLSATV~~~~~varfL~g~~~-~~~Iv~~  215 (814)
T COG1201         188 GLSATVGPPEEVAKFLVGFGD-PCEIVDV  215 (814)
T ss_pred             eehhccCCHHHHHHHhcCCCC-ceEEEEc
Confidence            599999999999999999653 5666654

>KOG0949|consensus

Probab=94.23  E-value=0.039  Score=47.59  Aligned_cols=45  Identities=22%  Similarity=0.275  Sum_probs=38.3

Q ss_pred             CeeeecCChHHHHHHhc---CcCCccEEEEeecCCcccceeEEEeCCc
Q psy13858          1 MLSATVPNTLEFADWVG---NTKKTKVYVVSTLKRPVPLKHFLYVGPV   45 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~---~~~~~~~~vv~t~~RPVPL~~~~~~~~~   45 (70)
                      .|||||+|+..|-.|+.   +-++++|+++....|=--|..+++....
T Consensus       666 ~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~  713 (1330)
T KOG0949|consen  666 VLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMN  713 (1330)
T ss_pred             EEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCC
Confidence            38999999999999998   4456789999999999999988886543

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase

Probab=93.50  E-value=0.1  Score=42.38  Aligned_cols=37  Identities=19%  Similarity=0.117  Sum_probs=28.4

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEE
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFL   40 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~   40 (70)
                      ++|||++|+.++++++..   .++.+|..+..|.+-.++.
T Consensus       199 ~~SATi~n~~~~~~~l~g---~~~~~i~~~~~~~~~~~~~  235 (742)
T TIGR03817       199 LASATTADPAAAASRLIG---APVVAVTEDGSPRGARTVA  235 (742)
T ss_pred             EEecCCCCHHHHHHHHcC---CCeEEECCCCCCcCceEEE
Confidence            479999999999998765   4677887777776655443

A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.

>PRK13767 ATP-dependent helicase; Provisional

Probab=92.39  E-value=0.13  Score=42.50  Aligned_cols=30  Identities=23%  Similarity=0.180  Sum_probs=22.7

Q ss_pred             CeeeecCChHHHHHHhcCcC----CccEEEEeec
Q psy13858          1 MLSATVPNTLEFADWVGNTK----KTKVYVVSTL   30 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~----~~~~~vv~t~   30 (70)
                      +||||++|++++|+|+....    .++|.++...
T Consensus       212 glSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~  245 (876)
T PRK13767        212 GLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDAR  245 (876)
T ss_pred             EEecccCCHHHHHHHhcCccccCCCCceEEEccC
Confidence            58999999999999998742    3456666543

>KOG0952|consensus

Probab=82.45  E-value=0.65  Score=40.40  Aligned_cols=41  Identities=32%  Similarity=0.485  Sum_probs=31.9

Q ss_pred             eeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCc
Q psy13858          2 LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPV   45 (70)
Q Consensus         2 LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~   45 (70)
                      ||--+.|+.++|+|++....   .=+...-|||||+-++-...+
T Consensus      1089 lsta~~na~dla~wl~~~~~---~nf~~svrpvp~~~~i~gfp~ 1129 (1230)
T KOG0952|consen 1089 LSTALANANDLADWLNIKDM---YNFRPSVRPVPLEVHIDGFPG 1129 (1230)
T ss_pred             HhhhhhccHHHHHHhCCCCc---CCCCcccccCCceEeecCCCc
Confidence            56678999999999998554   445567899999988875543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	70
4a4z_A	997	Crystal Structure Of The S. Cerevisiae Dexh Helicas		7e-11
2xgj_A	1010	Structure Of Mtr4, A Dexh Helicase Involved In Nucl		2e-06
3l9o_A	1108	Crystal Structure Of Mtr4, A Co-Factor Of The Nucle		3e-06

>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 4/57 (7%)
Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG----PVLEKNQLFL 53
           +LSATVPNT EFA+W+G TK+  +YV+ST KRPVPL+  ++      PV+ +N  FL
Sbjct: 183 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFL 239

>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 41
           LSAT+PN +EFA+W+        ++V T  RP PL+H+L+
Sbjct: 229 LSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF 268

>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLY 41
           LSAT+PN +EFA+W+        ++V T  RP PL+H+L+
Sbjct: 327 LSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF 366

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	2e-11
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	1e-09
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	3e-09
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	1e-08
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	3e-08
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	4e-08

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997

 Score = 56.8 bits (136), Expect = 2e-11
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGE 60
           +LSATVPNT EFA+W+G TK+  +YV+ST KRPVPL+  ++        +L  +     E
Sbjct: 183 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAK-----KELIPVINQNSE 237

Query: 61  FLTRG 65
           FL   
Sbjct: 238 FLEAN 242

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108

 Score = 51.0 bits (121), Expect = 1e-09
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP 44
            LSAT+PN +EFA+W+        ++V T  RP PL+H+L+   
Sbjct: 326 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAH 369

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010

 Score = 50.2 bits (119), Expect = 3e-09
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 1   MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGE 60
            LSAT+PN +EFA+W+        ++V T  RP PL+H+L+       + ++L+ + +  
Sbjct: 228 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAH---GDGIYLVVDEKST 284

Query: 61  FLTRG 65
           F    
Sbjct: 285 FREEN 289

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIRE 56
           LSAT+ N  + A W+G         V+T  RPVPL   +      +K    + ++
Sbjct: 181 LSATISNYKQIAKWLG------AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKD 229

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720

 Score = 47.2 bits (112), Expect = 3e-08
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIR 55
           LSAT+ N  E A+W+         ++ +  RPV L+  ++    +      + R
Sbjct: 175 LSATIGNPEELAEWLN------AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDR 222

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702

 Score = 47.1 bits (112), Expect = 4e-08
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 2   LSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKN 49
           LSAT PN  E A+W+            +  RPVPL   +     LE  
Sbjct: 178 LSATAPNVTEIAEWLD------ADYYVSDWRPVPLVEGVLCEGTLELF 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	99.06
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	99.03
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	98.95
4f92_B	1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	98.86
4f92_B	1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	98.6
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	97.97
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	97.93
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	97.93
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	88.71
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	80.95

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}

Probab=99.06  E-value=7.8e-11  Score=95.07  Aligned_cols=64  Identities=31%  Similarity=0.611  Sum_probs=57.0

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCcccccCce
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDF   67 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~   67 (70)
                      +||||+||+.+||+||+..+++++.++.+++||+||+++++..++   +.++.+++.++.|...+|.
T Consensus       228 ~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  291 (1010)
T 2xgj_A          228 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHG---DGIYLVVDEKSTFREENFQ  291 (1010)
T ss_dssp             EEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTS---SCCEEEECTTCCBCHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCC---cceeeeeccccccchHHHH
Confidence            589999999999999999888899999999999999999998765   7889999999888765543

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A

Probab=99.03  E-value=1.1e-10  Score=93.98  Aligned_cols=62  Identities=47%  Similarity=0.781  Sum_probs=56.9

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCcccccCce
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDF   67 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~   67 (70)
                      +||||++|+.+|++|++..++++|.++.+.+||+||+++++..     +.++.++++++.|...+|.
T Consensus       183 lLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~-----~~~~~~~~~~~~~~~~~~~  244 (997)
T 4a4z_A          183 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAK-----KELIPVINQNSEFLEANFR  244 (997)
T ss_dssp             EEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEET-----TEEEEEECTTCCBCHHHHH
T ss_pred             EEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecC-----CcchhcccchhhhhHHHHH
Confidence            5899999999999999999989999999999999999999985     5899999999999877764

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=98.95  E-value=3.5e-10  Score=92.02  Aligned_cols=64  Identities=31%  Similarity=0.611  Sum_probs=58.0

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCCcccCCceEEeecCCCcccccCce
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGPVLEKNQLFLIREAEGEFLTRGDF   67 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~   67 (70)
                      +||||+||+.+|++|++..++.++.++.+++||+||+++++...+   ++++.++++.+.|...+|.
T Consensus       326 ~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~---~~~~~~vd~~~~~~~~~~~  389 (1108)
T 3l9o_A          326 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHG---DGIYLVVDEKSTFREENFQ  389 (1108)
T ss_dssp             EEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTS---SCCEEEEETTTEECHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCC---cceeeeeccccchhhhhHH
Confidence            589999999999999999999999999999999999999998776   7899999999988766553

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B

Probab=98.86  E-value=3.7e-10  Score=95.28  Aligned_cols=44  Identities=27%  Similarity=0.317  Sum_probs=39.5

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCC
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP   44 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~   44 (70)
                      +|||||||++|+|+||+..+.+.++++.+++|||||+++++...
T Consensus       249 ~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~  292 (1724)
T 4f92_B          249 GLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGIT  292 (1724)
T ss_dssp             EEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEEC
T ss_pred             EEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccC
Confidence            58999999999999999988888999999999999998776443

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B

Probab=98.60  E-value=2e-08  Score=84.94  Aligned_cols=43  Identities=28%  Similarity=0.459  Sum_probs=37.9

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCC
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP   44 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~   44 (70)
                      +|||||+|++|||+||+... ..++.+.+++|||||+.+++...
T Consensus      1088 ~lSATl~N~~dla~WL~~~~-~~~~~~~~~~RPvpL~~~i~~~~ 1130 (1724)
T 4f92_B         1088 ALSSSLSNAKDVAHWLGCSA-TSTFNFHPNVRPVPLELHIQGFN 1130 (1724)
T ss_dssp             EEESCBTTHHHHHHHHTCCS-TTEEECCGGGCSSCEEEEEEEEC
T ss_pred             EEeCCCCCHHHHHHHhCCCC-CCeEEeCCCCCCCCeEEEEEecc
Confidence            58999999999999999855 46889999999999999987654

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=97.97  E-value=5.5e-06  Score=63.04  Aligned_cols=38  Identities=39%  Similarity=0.491  Sum_probs=32.8

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeCC
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVGP   44 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~~   44 (70)
                      +||||++|+++|++|++.      .++..++||+||+.+++..+
T Consensus       180 ~lSATl~n~~~~~~~l~~------~~~~~~~r~~~l~~~~~~~~  217 (715)
T 2va8_A          180 ALSATISNYKQIAKWLGA------EPVATNWRPVPLIEGVIYPE  217 (715)
T ss_dssp             EEESCCTTHHHHHHHHTC------EEEECCCCSSCEEEEEEEEC
T ss_pred             EEcCCCCCHHHHHHHhCC------CccCCCCCCCCceEEEEecC
Confidence            589999999999999986      67899999999997766443

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=97.93  E-value=7.4e-06  Score=62.46  Aligned_cols=37  Identities=38%  Similarity=0.479  Sum_probs=32.6

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeC
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG   43 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~   43 (70)
                      +||||++|++++++|++.      .++..+.||+|++.+++..
T Consensus       177 ~lSATl~n~~~~~~~l~~------~~~~~~~r~~~l~~~~~~~  213 (702)
T 2p6r_A          177 GLSATAPNVTEIAEWLDA------DYYVSDWRPVPLVEGVLCE  213 (702)
T ss_dssp             EEECCCTTHHHHHHHTTC------EEEECCCCSSCEEEEEECS
T ss_pred             EECCCcCCHHHHHHHhCC------CcccCCCCCccceEEEeeC
Confidence            589999999999999986      6789999999999877643

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=97.93  E-value=6.7e-06  Score=62.84  Aligned_cols=37  Identities=32%  Similarity=0.489  Sum_probs=32.4

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEeC
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYVG   43 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~~   43 (70)
                      +||||++|++++++|++.      .++..++||||++.+++..
T Consensus       174 ~lSATl~n~~~~~~~l~~------~~~~~~~rp~~l~~~~~~~  210 (720)
T 2zj8_A          174 GLSATIGNPEELAEWLNA------ELIVSDWRPVKLRRGVFYQ  210 (720)
T ss_dssp             EEECCCSCHHHHHHHTTE------EEEECCCCSSEEEEEEEET
T ss_pred             EEcCCcCCHHHHHHHhCC------cccCCCCCCCcceEEEEeC
Confidence            589999999999999975      6788999999999877653

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=88.71  E-value=0.12  Score=33.27  Aligned_cols=31  Identities=16%  Similarity=0.311  Sum_probs=19.7

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCc
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRP   33 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RP   33 (70)
                      +||||+|+  ++.+|+...-+.|+.+.....||
T Consensus       186 ~~SAT~~~--~~~~~~~~~~~~p~~~~~~~~~~  216 (219)
T 1q0u_A          186 VFSATIPE--KLKPFLKKYMENPTFVHVLEHHH  216 (219)
T ss_dssp             EEESCCCG--GGHHHHHHHCSSCEEEECC----
T ss_pred             EEecCCCH--HHHHHHHHHcCCCeEEEeecccc
Confidence            58999976  66777776666787666655553

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=80.95  E-value=0.71  Score=36.29  Aligned_cols=36  Identities=17%  Similarity=0.384  Sum_probs=27.4

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCCcccceeEEEe
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKRPVPLKHFLYV   42 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~RPVPL~~~~~~   42 (70)
                      +||||+ |+++|++|++.   .  .++....|+.|++.++..
T Consensus       245 l~SAT~-~~~~l~~~~~~---~--~vi~v~gr~~pv~~~~~~  280 (773)
T 2xau_A          245 IMSATL-DAEKFQRYFND---A--PLLAVPGRTYPVELYYTP  280 (773)
T ss_dssp             EEESCS-CCHHHHHHTTS---C--CEEECCCCCCCEEEECCS
T ss_pred             EEeccc-cHHHHHHHhcC---C--CcccccCcccceEEEEec
Confidence            489999 78999999975   2  356667788888866544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	70
d2p6ra3	202	c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus	0.002

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 32.2 bits (72), Expect = 0.002
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 1   MLSATVPNTLEFADWVG 17
            LSAT PN  E A+W+ 
Sbjct: 177 GLSATAPNVTEIAEWLD 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	98.1
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	83.27

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.10  E-value=6.7e-07  Score=56.99  Aligned_cols=26  Identities=38%  Similarity=0.463  Sum_probs=23.2

Q ss_pred             CeeeecCChHHHHHHhcCcCCccEEEEeecCC
Q psy13858          1 MLSATVPNTLEFADWVGNTKKTKVYVVSTLKR   32 (70)
Q Consensus         1 ~LSATvpN~~e~A~Wi~~~~~~~~~vv~t~~R   32 (70)
                      +||||+||+++||+||++      ..+.+++|
T Consensus       177 ~lSATl~n~~~~~~~l~~------~~~~s~~~  202 (202)
T d2p6ra3         177 GLSATAPNVTEIAEWLDA------DYYVSDWR  202 (202)
T ss_dssp             EEECCCTTHHHHHHHTTC------EEEECCCC
T ss_pred             EEcCCCCcHHHHHHHcCC------CeeeCCCC
Confidence            589999999999999988      67778877

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=83.27  E-value=0.15  Score=31.13  Aligned_cols=18  Identities=28%  Similarity=0.379  Sum_probs=15.4

Q ss_pred             CeeeecCCh--HHHHHHhcC
Q psy13858          1 MLSATVPNT--LEFADWVGN   18 (70)
Q Consensus         1 ~LSATvpN~--~e~A~Wi~~   18 (70)
                      +||||.++.  +|+.+|++-
T Consensus       179 ~lSATl~~~v~~di~~~L~l  198 (206)
T d1oywa2         179 ALTATADDTTRQDIVRLLGL  198 (206)
T ss_dssp             EEESCCCHHHHHHHHHHHTC
T ss_pred             EEEeCCCHHHHHHHHHHcCC
Confidence            589999886  589999986