Psyllid ID: psy1385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MTPGGPGFPNTKPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEcccccccEccccccccccccccccccccccccccEEEEEcccccEccc
Coil and Loop (DISEMBL)
mtpggpgfpntkpmpvcagkiypenqamvfnpqnpnappiypcgichkevhdndqailcesgcnfwyhr
Flexible Loop (DISEMBL)
mtpggpgfpntkpmpVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR
Low Complexity Region (SEG)
MTPGGPGFPNTKPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR
Disordered region (IsUnstruct)
***************VCAGKIYPENQAMVFNP***NAPPIYPCGICHKEVHDNDQAILCESGCNFWY**
Disordered Region (DISOPRED)
*****************************************PCGICHKEVHDNDQAILCESGCNFWYHR
Disordered Region (DISEMBL)
MTPGGPGFPNTKPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR
Disordered Region (DISPRO)
**********TKPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWY*R
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTPGGPGFPNTKPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
Q9V9W8	815	Protein pygopus OS=Drosop	yes	N/A	0.840	0.071	0.741	3e-21
Q9Y3Y4	419	Pygopus homolog 1 OS=Homo	yes	N/A	0.449	0.073	0.612	8e-07
Q9D0P5	417	Pygopus homolog 1 OS=Mus	yes	N/A	0.449	0.074	0.612	9e-07
Q9BRQ0	406	Pygopus homolog 2 OS=Homo	no	N/A	0.434	0.073	0.566	3e-06

>sp|Q9V9W8|PYGO_DROME Protein pygopus OS=Drosophila melanogaster GN=pygo PE=1 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 51/58 (87%)

Query: 12  KPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           KPM +  GK+YP  Q MVFNPQNPNAPPIYPCG+CHKEV+DND+A+ CESGCNF++HR
Sbjct: 719 KPMTMGGGKMYPPGQPMVFNPQNPNAPPIYPCGMCHKEVNDNDEAVFCESGCNFFFHR 776

Involved in signal transduction through the Wnt pathway.
Drosophila melanogaster (taxid: 7227)

>sp|Q9Y3Y4|PYGO1_HUMAN Pygopus homolog 1 OS=Homo sapiens GN=PYGO1 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 39  PIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct: 339 PVYPCGICTNEVNDDQDAILCEASCQKWFHR 369

Involved in signal transduction through the Wnt pathway.

Homo sapiens (taxid: 9606)

>sp|Q9D0P5|PYGO1_MOUSE Pygopus homolog 1 OS=Mus musculus GN=Pygo1 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 39  PIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct: 337 PVYPCGICTNEVNDDQDAILCEASCQKWFHR 367

Involved in signal transduction through the Wnt pathway.

Mus musculus (taxid: 10090)

>sp|Q9BRQ0|PYGO2_HUMAN Pygopus homolog 2 OS=Homo sapiens GN=PYGO2 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 40  IYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           +YPCG C  EV+D+  AILCE+ C  W+HR
Sbjct: 327 VYPCGACRSEVNDDQDAILCEASCQKWFHR 356

Involved in signal transduction through the Wnt pathway.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
328705285	503	PREDICTED: hypothetical protein LOC10016	0.927	0.127	0.861	1e-25
357626964	492	hypothetical protein KGM_16968 [Danaus p	0.840	0.117	0.879	2e-25
270014625	310	hypothetical protein TcasGA2_TC004669 [T	0.855	0.190	0.847	2e-24
241695263	214	pygopus, putative [Ixodes scapularis] gi	0.840	0.271	0.862	3e-24
170040364	735	conserved hypothetical protein [Culex qu	0.840	0.078	0.827	1e-23
322784876	501	hypothetical protein SINV_06434 [Solenop	0.782	0.107	0.888	1e-23
347968209	887	AGAP013538-PA [Anopheles gambiae str. PE	0.840	0.065	0.827	1e-23
312379504	1580	hypothetical protein AND_08634 [Anophele	0.840	0.036	0.827	1e-23
332026065	501	Protein pygopus [Acromyrmex echinatior]	0.782	0.107	0.888	2e-23
403183381	793	AAEL017194-PA [Aedes aegypti]	0.840	0.073	0.827	2e-23

>gi|328705285|ref|XP_001946189.2| PREDICTED: hypothetical protein LOC100161154 isoform 1 [Acyrthosiphon pisum] gi|328705287|ref|XP_003242755.1| PREDICTED: hypothetical protein LOC100161154 isoform 2 [Acyrthosiphon pisum]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/65 (86%), Positives = 60/65 (92%), Gaps = 1/65 (1%)

Query: 5   GPGFPNTKPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCN 64
           GPG PN+KPMPV AGKIYP +Q MVFNPQNPNAPPIYPCG CHKEVHDNDQA+LCESGCN
Sbjct: 403 GPG-PNSKPMPVSAGKIYPHDQPMVFNPQNPNAPPIYPCGNCHKEVHDNDQAVLCESGCN 461

Query: 65  FWYHR 69
           FW+HR
Sbjct: 462 FWFHR 466

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626964|gb|EHJ76837.1| hypothetical protein KGM_16968 [Danaus plexippus]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/58 (87%), Positives = 55/58 (94%)

Query: 12  KPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           KPMPV AGK+YP +Q MVFNPQNPNAPPIYPCG+CHKEVHDNDQAILCESGCNFW+HR
Sbjct: 396 KPMPVSAGKVYPPDQPMVFNPQNPNAPPIYPCGVCHKEVHDNDQAILCESGCNFWFHR 453

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014625|gb|EFA11073.1| hypothetical protein TcasGA2_TC004669 [Tribolium castaneum]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/59 (84%), Positives = 55/59 (93%)

Query: 11  TKPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           +KPMPV AGK+YP +Q MVFN QNPNAPPIYPCG+CHKEVHDNDQAILCESGCNFW+HR
Sbjct: 213 SKPMPVSAGKVYPADQPMVFNSQNPNAPPIYPCGVCHKEVHDNDQAILCESGCNFWFHR 271

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241695263|ref|XP_002413030.1| pygopus, putative [Ixodes scapularis] gi|215506844|gb|EEC16338.1| pygopus, putative [Ixodes scapularis]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/58 (86%), Positives = 55/58 (94%)

Query: 12  KPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           KPMP+ +GKIYP +Q MVFNPQNPNAPPIYPCG+CHKEVHDNDQAILCESGCNFW+HR
Sbjct: 118 KPMPMMSGKIYPHDQPMVFNPQNPNAPPIYPCGVCHKEVHDNDQAILCESGCNFWFHR 175

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170040364|ref|XP_001847971.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167863929|gb|EDS27312.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 53/58 (91%)

Query: 12  KPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           KPMPV +GK+YP +Q+ VFNPQNPNAPPIYPCG CHKEVHDNDQ ILCESGCNFW+HR
Sbjct: 678 KPMPVTSGKLYPPDQSKVFNPQNPNAPPIYPCGGCHKEVHDNDQGILCESGCNFWFHR 735

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784876|gb|EFZ11656.1| hypothetical protein SINV_06434 [Solenopsis invicta]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/54 (88%), Positives = 52/54 (96%)

Query: 16  VCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           + AGKIYP +Q+MVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFW+HR
Sbjct: 409 ISAGKIYPPDQSMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWFHR 462

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968209|ref|XP_003436178.1| AGAP013538-PA [Anopheles gambiae str. PEST] gi|347968211|ref|XP_003436179.1| AGAP013538-PB [Anopheles gambiae str. PEST] gi|333468111|gb|EGK96834.1| AGAP013538-PA [Anopheles gambiae str. PEST] gi|333468112|gb|EGK96835.1| AGAP013538-PB [Anopheles gambiae str. PEST]

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 53/58 (91%)

Query: 12  KPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           KPMPV +GK+YP +Q+ VFNPQNPNAPPIYPCG CHKEVHDNDQ ILCESGCNFW+HR
Sbjct: 791 KPMPVTSGKLYPPDQSKVFNPQNPNAPPIYPCGGCHKEVHDNDQGILCESGCNFWFHR 848

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379504|gb|EFR25756.1| hypothetical protein AND_08634 [Anopheles darlingi]

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 53/58 (91%)

Query: 12   KPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
            KPMPV +GK+YP +Q+ VFNPQNPNAPPIYPCG CHKEVHDNDQ ILCESGCNFW+HR
Sbjct: 1448 KPMPVTSGKLYPPDQSKVFNPQNPNAPPIYPCGRCHKEVHDNDQGILCESGCNFWFHR 1505

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026065|gb|EGI66216.1| Protein pygopus [Acromyrmex echinatior]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/54 (88%), Positives = 51/54 (94%)

Query: 16  VCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           + AGKIYP  Q+MVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFW+HR
Sbjct: 409 ISAGKIYPPEQSMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWFHR 462

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403183381|gb|EJY58054.1| AAEL017194-PA [Aedes aegypti]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/58 (82%), Positives = 53/58 (91%)

Query: 12  KPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           KPMPV +GK+YP +Q+ VFNPQNPNAPPIYPCG CHKEVHDNDQAILCE GCNFW+HR
Sbjct: 697 KPMPVTSGKLYPPDQSKVFNPQNPNAPPIYPCGGCHKEVHDNDQAILCEQGCNFWFHR 754

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
FB|FBgn0043900	815	pygo "pygopus" [Drosophila mel	0.956	0.080	0.696	3.4e-23
UNIPROTKB|F1MHP8	419	PYGO1 "Uncharacterized protein	0.492	0.081	0.558	2.7e-10
UNIPROTKB|A7Y2D6	419	PYGO1 "Pygopus-like protein 1"	0.492	0.081	0.558	2.7e-10
UNIPROTKB|Q9Y3Y4	419	PYGO1 "Pygopus homolog 1" [Hom	0.492	0.081	0.558	2.7e-10
UNIPROTKB|F1RZF2	419	PYGO1 "Uncharacterized protein	0.492	0.081	0.558	2.7e-10
MGI|MGI:1919385	417	Pygo1 "pygopus 1" [Mus musculu	0.492	0.081	0.558	4.2e-10
UNIPROTKB|F1Q0S3	417	PYGO1 "Uncharacterized protein	0.492	0.081	0.558	5.3e-10
ZFIN|ZDB-GENE-050809-108	571	pygo2 "pygopus homolog 2 (Dros	0.840	0.101	0.403	8.9e-10
UNIPROTKB|J9NT94	343	PYGO1 "Uncharacterized protein	0.492	0.099	0.558	9.2e-10
RGD|1594620	401	Pygo1 "pygopus 1" [Rattus norv	0.492	0.084	0.558	1e-09

FB|FBgn0043900 pygo "pygopus" [Drosophila melanogaster (taxid:7227)]

 Score = 278 (102.9 bits), Expect = 3.4e-23, P = 3.4e-23
 Identities = 46/66 (69%), Positives = 54/66 (81%)

Query:     4 GGPGFPNTKPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGC 63
             GGP     KPM +  GK+YP  Q MVFNPQNPNAPPIYPCG+CHKEV+DND+A+ CESGC
Sbjct:   711 GGPMGVGPKPMTMGGGKMYPPGQPMVFNPQNPNAPPIYPCGMCHKEVNDNDEAVFCESGC 770

Query:    64 NFWYHR 69
             NF++HR
Sbjct:   771 NFFFHR 776

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0016055 "Wnt receptor signaling pathway" evidence=IGI;IMP;NAS;IPI

GO:0007223 "Wnt receptor signaling pathway, calcium modulating pathway" evidence=IMP

GO:0030177 "positive regulation of Wnt receptor signaling pathway" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IMP

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001105 "RNA polymerase II transcription coactivator activity" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0035214 "eye-antennal disc development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048526 "imaginal disc-derived wing expansion" evidence=IMP

GO:0060232 "delamination" evidence=IMP

GO:0007472 "wing disc morphogenesis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1MHP8 PYGO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 128 (50.1 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query:    36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
             ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct:   336 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 369

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A7Y2D6 PYGO1 "Pygopus-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query:    36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
             ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct:   336 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 369

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9Y3Y4 PYGO1 "Pygopus homolog 1" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query:    36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
             ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct:   336 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 369

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1RZF2 PYGO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 128 (50.1 bits), Expect = 2.7e-10, Sum P(3) = 2.7e-10
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query:    36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
             ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct:   336 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 369

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1919385 Pygo1 "pygopus 1" [Mus musculus (taxid:10090)]

 Score = 128 (50.1 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query:    36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
             ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct:   334 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 367

GO:0001822 "kidney development" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IGI

GO:0016055 "Wnt receptor signaling pathway" evidence=IGI

GO:0034504 "protein localization to nucleus" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1Q0S3 PYGO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 128 (50.1 bits), Expect = 5.3e-10, Sum P(3) = 5.3e-10
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query:    36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
             ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct:   335 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 368

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-050809-108 pygo2 "pygopus homolog 2 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 133 (51.9 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
 Identities = 25/62 (40%), Positives = 36/62 (58%)

Query:     9 PNTK-PMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWY 67
             PNT+ P+P  +G   P +      P       ++PCG+C  EVHD+ +AILCE+ C  W+
Sbjct:   463 PNTQSPLP--SGPA-PPSSGPGSGPPKLGGGMVFPCGLCMSEVHDDQEAILCEASCQRWF 519

Query:    68 HR 69
             HR
Sbjct:   520 HR 521

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J9NT94 PYGO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 128 (50.1 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query:    36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
             ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct:   268 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 301

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1594620 Pygo1 "pygopus 1" [Rattus norvegicus (taxid:10116)]

 Score = 128 (50.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query:    36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
             ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct:   318 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 351

GO:0001822 "kidney development" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA;ISO

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA;ISO

GO:0034504 "protein localization to nucleus" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9V9W8	PYGO_DROME	No assigned EC number	0.7413	0.8405	0.0711	yes	N/A
Q9Y3Y4	PYGO1_HUMAN	No assigned EC number	0.6129	0.4492	0.0739	yes	N/A
Q9D0P5	PYGO1_MOUSE	No assigned EC number	0.6129	0.4492	0.0743	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	97.95
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	97.45
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	94.65
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	92.17
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	90.47
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	90.28
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	90.13
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	85.36
PF07282	69	OrfB_Zn_ribbon: Putative transposase DNA-binding d	82.71
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	81.52
KOG3507|consensus	62		80.66

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.95  E-value=8.1e-06  Score=45.08  Aligned_cols=25  Identities=44%  Similarity=1.220  Sum_probs=22.6

Q ss_pred             ccccccccccCCceEEecccccceeeC
Q psy1385          43 CGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        43 CG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      |.+|++ ..++++.|.|+. |+.|||.
T Consensus         2 C~vC~~-~~~~~~~i~C~~-C~~~~H~   26 (51)
T PF00628_consen    2 CPVCGQ-SDDDGDMIQCDS-CNRWYHQ   26 (51)
T ss_dssp             BTTTTS-SCTTSSEEEBST-TSCEEET
T ss_pred             CcCCCC-cCCCCCeEEcCC-CChhhCc
Confidence            788998 888899999996 9999995

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>smart00249 PHD PHD zinc finger

Probab=97.45  E-value=7.7e-05  Score=38.50  Aligned_cols=25  Identities=36%  Similarity=1.151  Sum_probs=21.4

Q ss_pred             ccccccccccCCceEEecccccceeeC
Q psy1385          43 CGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        43 CG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      |.+|++.. ++++.|.|+. |.+|||.
T Consensus         2 C~~C~~~~-~~~~~i~C~~-C~~~~H~   26 (47)
T smart00249        2 CSVCGKPD-DGGELLQCDG-CDRWYHQ   26 (47)
T ss_pred             cccCCCcC-CCCCEEECCC-CCchhhh
Confidence            67888876 7889999996 9999994

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=94.65  E-value=0.02  Score=34.90  Aligned_cols=29  Identities=34%  Similarity=0.824  Sum_probs=26.8

Q ss_pred             CccccccccccccCCceEEecccccceeeC
Q psy1385          40 IYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        40 ~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      -..|-.|++.|.|.||.+.|.. |..=|||
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~-CgapyHR   33 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPE-CGAPYHR   33 (54)
T ss_pred             CccChhhCCcccCCCCEEECCC-CCCcccH
Confidence            3579999999999999999999 9999998

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=92.17  E-value=0.092  Score=27.10  Aligned_cols=27  Identities=26%  Similarity=0.709  Sum_probs=10.2

Q ss_pred             ccccccccccccCCceEEecccccceeeC
Q psy1385          41 YPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        41 ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      +.|..|.+.+.. +-.-.|.. |++.+|.
T Consensus         1 ~~C~~C~~~~~~-~~~Y~C~~-Cdf~lH~   27 (30)
T PF07649_consen    1 FRCDACGKPIDG-GWFYRCSE-CDFDLHE   27 (30)
T ss_dssp             ---TTTS----S---EEE-TT-T-----H
T ss_pred             CcCCcCCCcCCC-CceEECcc-CCCccCh
Confidence            479999999888 78888988 9999983

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=90.47  E-value=0.11  Score=28.43  Aligned_cols=24  Identities=38%  Similarity=0.841  Sum_probs=18.5

Q ss_pred             ccccccccccccC-CceEEecccccc
Q psy1385          41 YPCGICHKEVHDN-DQAILCESGCNF   65 (69)
Q Consensus        41 ypCG~C~~eV~D~-ddAI~CE~~C~~   65 (69)
                      |.||.|+.+|... .|+|.|.- |..
T Consensus         1 Y~C~~Cg~~~~~~~~~~irC~~-CG~   25 (32)
T PF03604_consen    1 YICGECGAEVELKPGDPIRCPE-CGH   25 (32)
T ss_dssp             EBESSSSSSE-BSTSSTSSBSS-SS-
T ss_pred             CCCCcCCCeeEcCCCCcEECCc-CCC
Confidence            7899999999984 78899987 653

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=90.28  E-value=0.2  Score=26.91  Aligned_cols=26  Identities=31%  Similarity=0.791  Sum_probs=21.7

Q ss_pred             cccccccccccCCceEEecccccceeeC
Q psy1385          42 PCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        42 pCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      .|.||.+++.+++..+...  |.-.||+
T Consensus         2 ~C~IC~~~~~~~~~~~~l~--C~H~fh~   27 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLP--CGHVFHR   27 (44)
T ss_dssp             CETTTTCBHHTTSCEEEET--TSEEEEH
T ss_pred             CCcCCChhhcCCCeEEEcc--CCCeeCH
Confidence            4999999999987777554  9999994

...

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=90.13  E-value=0.19  Score=28.77  Aligned_cols=24  Identities=33%  Similarity=0.869  Sum_probs=19.9

Q ss_pred             CccccccccccccC-CceEEeccccc
Q psy1385          40 IYPCGICHKEVHDN-DQAILCESGCN   64 (69)
Q Consensus        40 ~ypCG~C~~eV~D~-ddAI~CE~~C~   64 (69)
                      .|.|+.|+.++.-+ .+.|.|-- |.
T Consensus         2 ~Y~C~~Cg~~~~~~~~~~irC~~-CG   26 (44)
T smart00659        2 IYICGECGRENEIKSKDVVRCRE-CG   26 (44)
T ss_pred             EEECCCCCCEeecCCCCceECCC-CC
Confidence            58999999999875 78999975 54

present in RNA polymerase I, II and III

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=85.36  E-value=0.88  Score=23.63  Aligned_cols=26  Identities=23%  Similarity=0.701  Sum_probs=21.7

Q ss_pred             ccccccccccccCCceEEecccccceee
Q psy1385          41 YPCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        41 ypCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      |.|++|.+++.... .-.|+. |.+=+|
T Consensus         1 ~~C~~C~~~~~~~~-~Y~C~~-c~f~lh   26 (30)
T PF03107_consen    1 FWCDVCRRKIDGFY-FYHCSE-CCFTLH   26 (30)
T ss_pred             CCCCCCCCCcCCCE-eEEeCC-CCCeEc
Confidence            57999999999877 999966 777666

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins

Probab=82.71  E-value=1.1  Score=25.81  Aligned_cols=30  Identities=20%  Similarity=0.533  Sum_probs=25.8

Q ss_pred             CCcccccccccccc--CCceEEecccccceeeC
Q psy1385          39 PIYPCGICHKEVHD--NDQAILCESGCNFWYHR   69 (69)
Q Consensus        39 ~~ypCG~C~~eV~D--~ddAI~CE~~C~~WFHR   69 (69)
                      +...|..|+..+.+  .+....|.. |.+.+||
T Consensus        27 TSq~C~~CG~~~~~~~~~r~~~C~~-Cg~~~~r   58 (69)
T PF07282_consen   27 TSQTCPRCGHRNKKRRSGRVFTCPN-CGFEMDR   58 (69)
T ss_pred             CccCccCcccccccccccceEEcCC-CCCEECc
Confidence            45569999999998  788999999 9999987

More information about these proteins can be found at Protein of the Month: Transposase [].

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=81.52  E-value=0.67  Score=23.40  Aligned_cols=19  Identities=37%  Similarity=0.975  Sum_probs=15.1

Q ss_pred             ccccccccccCCceEEeccccc
Q psy1385          43 CGICHKEVHDNDQAILCESGCN   64 (69)
Q Consensus        43 CG~C~~eV~D~ddAI~CE~~C~   64 (69)
                      |..|+++|.|  ++.+|.. |.
T Consensus         2 Cp~CG~~~~~--~~~fC~~-CG   20 (23)
T PF13240_consen    2 CPNCGAEIED--DAKFCPN-CG   20 (23)
T ss_pred             CcccCCCCCC--cCcchhh-hC
Confidence            8899999976  6778876 54

>KOG3507|consensus

Probab=80.66  E-value=1.1  Score=28.43  Aligned_cols=29  Identities=34%  Similarity=0.679  Sum_probs=22.0

Q ss_pred             CCCCCCcccccccccccc-CCceEEeccccc
Q psy1385          35 PNAPPIYPCGICHKEVHD-NDQAILCESGCN   64 (69)
Q Consensus        35 ~~s~~~ypCG~C~~eV~D-~ddAI~CE~~C~   64 (69)
                      ....-+|.||.|+.|-.= --|+|.|-. |.
T Consensus        15 r~~~miYiCgdC~~en~lk~~D~irCRe-CG   44 (62)
T KOG3507|consen   15 RTATMIYICGDCGQENTLKRGDVIRCRE-CG   44 (62)
T ss_pred             CcccEEEEeccccccccccCCCcEehhh-cc
Confidence            345568999999987543 589999987 64

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	69
2vpd_A	67	Decoding Of Methylated Histone H3 Tail By The Pygo-		1e-07
2vpb_A	65	Decoding Of Methylated Histone H3 Tail By The Pygo-		1e-07
2dx8_A	67	Crystal Structure Analysis Of The Phd Domain Of The		2e-07
2yyr_A	67	Structural Analysis Of Phd Domain Of Pygopus Comple		2e-07
2vpe_A	63	Decoding Of Methylated Histone H3 Tail By The Pygo-		4e-07
2vp7_A	71	Decoding Of Methylated Histone H3 Tail By The Pygo-		1e-06
2xb1_A	105	Crystal Structure Of The Human Pygo2 Phd Finger In		2e-06

>pdb|2VPD|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9 Wnt Signaling Complex Length = 67

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
          + ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct: 3  HSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 38

>pdb|2VPB|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9 Wnt Signaling Complex Length = 65

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
          + ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct: 2  HSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 37

>pdb|2DX8|A Chain A, Crystal Structure Analysis Of The Phd Domain Of The Transcription Coactivator Pygophus Length = 67

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
          + ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct: 3  HSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 38

>pdb|2YYR|A Chain A, Structural Analysis Of Phd Domain Of Pygopus Complexed With Trimethylated Histone H3 Peptide Length = 67

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
          + ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct: 3  HSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 38

>pdb|2VPE|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9 Wnt Signaling Complex Length = 63

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 37 APPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
          A  +YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct: 2  AMAVYPCGICTNEVNDDQDAILCEASCQKWFHR 34

>pdb|2VP7|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9 Wnt Signaling Complex Length = 71

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
          + ++ P+YPCGIC  EV+D+  AILCE+ C  ++HR
Sbjct: 3  HSSSDPVYPCGICTNEVNDDQDAILCEASCQKFFHR 38

>pdb|2XB1|A Chain A, Crystal Structure Of The Human Pygo2 Phd Finger In Complex With The B9l Hd1 Domain Length = 105

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 40 IYPCGICHKEVHDNDQAILCESGCNFWYHR 69
          +YPCG C  EV+D+  AILCE+ C  W+HR
Sbjct: 3  VYPCGACRSEVNDDQDAILCEASCQKWFHR 32

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	69
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	3e-13
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	1e-10

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65

 Score = 57.0 bits (137), Expect = 3e-13
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
          + ++ P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct: 2  HSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 37

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105

 Score = 51.5 bits (122), Expect = 1e-10
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 39 PIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           +YPCG C  EV+D+  AILCE+ C  W+HR
Sbjct: 2  LVYPCGACRSEVNDDQDAILCEASCQKWFHR 32

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	99.14
2xb1_A	105	Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro;	98.82
1we9_A	64	PHD finger family protein; structural genomics, PH	98.32
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	98.31
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	97.73
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	97.61
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	97.58
1wee_A	72	PHD finger family protein; structural genomics, PH	97.49
3kqi_A	75	GRC5, PHD finger protein 2; metal-binding, zinc-fi	97.38
1wem_A	76	Death associated transcription factor 1; structura	97.31
2ri7_A	174	Nucleosome-remodeling factor subunit BPTF; zinc fi	97.14
3o70_A	68	PHD finger protein 13; PHF13, structural genomics	96.96
1wew_A	78	DNA-binding family protein; structural genomics, P	96.71
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	96.65
3o7a_A	52	PHD finger protein 13 variant; PHF13, zinc finger,	96.59
2ku3_A	71	Bromodomain-containing protein 1; PHD finger, chro	96.57
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	96.47
2yt5_A	66	Metal-response element-binding transcription facto	96.34
2rsd_A	68	E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant	96.26
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	95.93
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	95.88
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	95.84
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	95.7
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	95.62
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	95.46
3kv5_D	488	JMJC domain-containing histone demethylation prote	95.27
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	94.73
2jmi_A	90	Protein YNG1, ING1 homolog 1; PHD, histone, recogn	94.25
3asl_A	70	E3 ubiquitin-protein ligase UHRF1; histone reader	94.19
2g6q_A	62	Inhibitor of growth protein 2; protein-peptide com	94.11
3v43_A	112	Histone acetyltransferase KAT6A; MOZ, PHD finger,	93.95
2vnf_A	60	ING 4, P29ING4, inhibitor of growth protein 4; ace	93.91
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	93.79
2kwj_A	114	Zinc finger protein DPF3; acetyl-lysine, transcrip	93.23
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	93.12
3c6w_A	59	P28ING5, inhibitor of growth protein 5; chromatin,	92.92
1x4i_A	70	Inhibitor of growth protein 3; structural genomics	92.82
2e6s_A	77	E3 ubiquitin-protein ligase UHRF2; PHD domain, str	92.79
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	92.77
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	92.36
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	92.29
4gne_A	107	Histone-lysine N-methyltransferase NSD3; zinc fing	92.15
1weu_A	91	Inhibitor of growth family, member 4; structural g	91.73
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	91.6
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	91.46
3shb_A	77	E3 ubiquitin-protein ligase UHRF1; unmodified hist	90.55
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	90.44
3rsn_A	177	SET1/ASH2 histone methyltransferase complex subun;	89.49
4bbq_A	117	Lysine-specific demethylase 2A; oxidoreductase, ub	89.41
1wev_A	88	Riken cDNA 1110020M19; structural genomics, PHD do	88.87
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	88.76
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	88.31
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	87.68
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	87.15
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	85.19
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	84.27
2ro1_A	189	Transcription intermediary factor 1-beta; KAP, TIF	82.66
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	82.59
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	82.01
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	80.05

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=99.14  E-value=1.4e-11  Score=73.76  Aligned_cols=35  Identities=54%  Similarity=1.376  Sum_probs=27.8

Q ss_pred             CCCCCCccccccccccccCCceEEecccccceeeC
Q psy1385          35 PNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        35 ~~s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      .+++++++|++|++.+.|++..|.|+++|+.|||+
T Consensus         3 ~~~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~   37 (65)
T 2vpb_A            3 SSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR   37 (65)
T ss_dssp             ------CBCTTTCSBCCTTSCEEEBTTTTCCEEEH
T ss_pred             CCCCCcCcCccCCCccCCCCCeEecccCccccCch
Confidence            46889999999999999999999999779999996

>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}

Probab=98.82  E-value=1.9e-09  Score=68.77  Aligned_cols=31  Identities=55%  Similarity=1.380  Sum_probs=28.9

Q ss_pred             CCccccccccccccCCceEEecccccceeeC
Q psy1385          39 PIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        39 ~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      ++|+|++|++.+.|+++.|.|+.+|+.|||.
T Consensus         2 ~~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~   32 (105)
T 2xb1_A            2 LVYPCGACRSEVNDDQDAILCEASCQKWFHR   32 (105)
T ss_dssp             CCCBCTTTCSBCCTTSCEEECTTTTCCEEEG
T ss_pred             CcCCCCCCCCccCCCCCEEEecCCccccccc
Confidence            5899999999999999999999779999995

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=98.32  E-value=4.4e-07  Score=52.10  Aligned_cols=33  Identities=24%  Similarity=0.737  Sum_probs=28.0

Q ss_pred             CCCCCccccccccccccCCceEEecccccceeeC
Q psy1385          36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        36 ~s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      ++.....|++|++...|++..|.|+. |+.|||.
T Consensus         2 s~~e~~~C~~C~~~~~~~~~mI~Cd~-C~~WfH~   34 (64)
T 1we9_A            2 SSGSSGQCGACGESYAADEFWICCDL-CEMWFHG   34 (64)
T ss_dssp             CCSSCCCCSSSCCCCCSSSCEEECSS-SCCEEET
T ss_pred             CCCCCCCCCCCCCccCCCCCEEEccC-CCCCCCc
Confidence            35566779999998888889999996 9999994

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=98.31  E-value=3.7e-07  Score=51.55  Aligned_cols=30  Identities=23%  Similarity=0.825  Sum_probs=26.6

Q ss_pred             CccccccccccccCCceEEecccccceeeC
Q psy1385          40 IYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        40 ~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      +-+|++|.+...|++..|.|++.|+.|||.
T Consensus         2 ~c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~   31 (52)
T 2kgg_A            2 VCAAQNCQRPCKDKVDWVQCDGGCDEWFHQ   31 (52)
T ss_dssp             CCSCTTCCCCCCTTCCEEECTTTTCCEEET
T ss_pred             cccCCCCcCccCCCCcEEEeCCCCCccCcc
Confidence            458999999998889999999669999994

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.73  E-value=2.9e-05  Score=46.44  Aligned_cols=31  Identities=29%  Similarity=0.715  Sum_probs=25.2

Q ss_pred             CCCCCCccccccccccccCCceEEecccccceee
Q psy1385          35 PNAPPIYPCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        35 ~~s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      .+....|.  +|++...++...|.|+. |+.|||
T Consensus         8 ~~~~~~~C--~C~~~~d~~~~MIqCd~-C~~WfH   38 (79)
T 1wep_A            8 MALVPVYC--LCRQPYNVNHFMIECGL-CQDWFH   38 (79)
T ss_dssp             CCCCCCCS--TTSCSCCSSSCEEEBTT-TCCEEE
T ss_pred             ccCCccEE--EcCCccCCCCceEEcCC-CCCcEE
Confidence            34555664  99998877889999997 999999

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=97.61  E-value=2.8e-05  Score=53.86  Aligned_cols=26  Identities=35%  Similarity=0.953  Sum_probs=23.6

Q ss_pred             ccccccccccCCc---eEEecccccceeeC
Q psy1385          43 CGICHKEVHDNDQ---AILCESGCNFWYHR   69 (69)
Q Consensus        43 CG~C~~eV~D~dd---AI~CE~~C~~WFHR   69 (69)
                      |++|.+-..++|.   .|.|+. |+.|||.
T Consensus         5 CpiC~k~Y~~~~~~~~MIqCd~-C~~W~H~   33 (183)
T 3lqh_A            5 CPLCDKCYDDDDYESKMMQCGK-CDRWVHS   33 (183)
T ss_dssp             CTTTCCBCTTCCTTCCEEECTT-TCCEEEG
T ss_pred             CCCCcCccCCcccCCCeEECCC-CCcccch
Confidence            9999999998874   999997 9999993

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=97.58  E-value=3.8e-05  Score=45.03  Aligned_cols=33  Identities=33%  Similarity=0.779  Sum_probs=26.0

Q ss_pred             CCCCCCCccccccccccccCCceEEecccccceee
Q psy1385          34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        34 ~~~s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      .........|.+|++.- |.+..|+|+. |+.|||
T Consensus        12 ~~~~~~~~~C~~C~~~~-~~~~mi~CD~-C~~wfH   44 (75)
T 2k16_A           12 DEWGNQIWICPGCNKPD-DGSPMIGCDD-CDDWYH   44 (75)
T ss_dssp             CSSSCEEECBTTTTBCC-SSCCEEECSS-SSSEEE
T ss_pred             cccCCCCcCCCCCCCCC-CCCCEEEcCC-CCcccc
Confidence            34455667799998764 5568999997 999999

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=97.49  E-value=8.8e-05  Score=43.64  Aligned_cols=30  Identities=23%  Similarity=0.701  Sum_probs=23.1

Q ss_pred             CCCccccccccccccCCceEEecccccceeeC
Q psy1385          38 PPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        38 ~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      ....-| +|++...|.+..|.|+. |+.|||-
T Consensus        14 ~~~~~C-~C~~~~~~g~~mI~Cd~-C~~W~H~   43 (72)
T 1wee_A           14 NWKVDC-KCGTKDDDGERMLACDG-CGVWHHT   43 (72)
T ss_dssp             SSEECC-TTCCCSCCSSCEEECSS-SCEEEET
T ss_pred             CcceEe-eCCCccCCCCcEEECCC-CCCccCC
Confidence            344557 79887655567999997 9999994

>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2

Probab=97.38  E-value=0.00012  Score=43.52  Aligned_cols=31  Identities=26%  Similarity=0.720  Sum_probs=24.3

Q ss_pred             CCCCCCccccccccccccCCceEEecccccceee
Q psy1385          35 PNAPPIYPCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        35 ~~s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      .++..+|.  +|++...+++..|.|+. |+.|||
T Consensus         6 ~~~~~~yC--iC~~~~~~~~~MI~Cd~-C~~WfH   36 (75)
T 3kqi_A            6 MATVPVYC--VCRLPYDVTRFMIECDA-CKDWFH   36 (75)
T ss_dssp             TCCCCEET--TTTEECCTTSCEEECTT-TCCEEE
T ss_pred             CCCCeeEE--ECCCcCCCCCCEEEcCC-CCCCEe
Confidence            44555553  89877666789999997 999999

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=97.31  E-value=0.00025  Score=41.80  Aligned_cols=26  Identities=35%  Similarity=0.966  Sum_probs=20.3

Q ss_pred             CccccccccccccCCceEEecccccceee
Q psy1385          40 IYPCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        40 ~ypCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      ..-| +|++.. +++..|.|+. |+.|||
T Consensus        16 ~~~C-~C~~~~-~~~~MI~Cd~-C~~WfH   41 (76)
T 1wem_A           16 ALYC-ICRQPH-NNRFMICCDR-CEEWFH   41 (76)
T ss_dssp             CCCS-TTCCCC-CSSCEEECSS-SCCEEE
T ss_pred             CCEE-ECCCcc-CCCCEEEeCC-CCCcEe
Confidence            3445 898754 4568999997 999999

>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*

Probab=97.14  E-value=0.00021  Score=46.66  Aligned_cols=29  Identities=31%  Similarity=0.803  Sum_probs=23.0

Q ss_pred             CCCccccccccccccCCceEEecccccceee
Q psy1385          38 PPIYPCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        38 ~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      ....-| +|++...++...|.|+. |..|||
T Consensus         6 ~~~~~C-~C~~~~~~~~~mi~Cd~-C~~WfH   34 (174)
T 2ri7_A            6 DTKLYC-ICKTPEDESKFYIGCDR-CQNWYH   34 (174)
T ss_dssp             -CCEET-TTTEECCTTSCEEECTT-TCCEEE
T ss_pred             CCCcEe-eCCCCCCCCCCEeECCC-CCchhC
Confidence            344457 99987666778999996 999999

>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}

Probab=96.96  E-value=0.00069  Score=40.19  Aligned_cols=32  Identities=25%  Similarity=0.560  Sum_probs=22.6

Q ss_pred             CCCCCCCccccccccccccCCceEEecccccceeeC
Q psy1385          34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        34 ~~~s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      +.++..+| | +|++. .|++.-|.|+. |+.|||-
T Consensus        14 ~~~~~~~~-C-iC~~~-~~~~~MIqCd~-C~~WfH~   45 (68)
T 3o70_A           14 LYFQGLVT-C-FCMKP-FAGRPMIECNE-CHTWIHL   45 (68)
T ss_dssp             CTTTTCCC-S-TTCCC-CTTCCEEECTT-TCCEEET
T ss_pred             CCCCCceE-e-ECCCc-CCCCCEEECCC-CCccccc
Confidence            34444444 5 99874 34556999998 9999993

>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=96.71  E-value=0.0014  Score=39.19  Aligned_cols=27  Identities=33%  Similarity=0.930  Sum_probs=21.0

Q ss_pred             CccccccccccccCCceEEecc-cccceee
Q psy1385          40 IYPCGICHKEVHDNDQAILCES-GCNFWYH   68 (69)
Q Consensus        40 ~ypCG~C~~eV~D~ddAI~CE~-~C~~WFH   68 (69)
                      ..-| +|++. .++...|.|+. .|+.|||
T Consensus        16 ~~~C-iC~~~-~~~g~MI~CD~~~C~~W~H   43 (78)
T 1wew_A           16 KVRC-VCGNS-LETDSMIQCEDPRCHVWQH   43 (78)
T ss_dssp             CCCC-SSCCC-CCCSCEEECSSTTTCCEEE
T ss_pred             CEEe-ECCCc-CCCCCEEEECCccCCcccc
Confidence            3445 89887 46678999993 3999999

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=96.65  E-value=0.0019  Score=40.14  Aligned_cols=27  Identities=37%  Similarity=0.968  Sum_probs=19.8

Q ss_pred             CccccccccccccCCceEEecccccceeeC
Q psy1385          40 IYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        40 ~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      +--| +|... .|+..-|+|+. |+.|||-
T Consensus        28 ~vrC-iC~~~-~~~~~mi~Cd~-C~~w~H~   54 (98)
T 2lv9_A           28 VTRC-ICGFT-HDDGYMICCDK-CSVWQHI   54 (98)
T ss_dssp             BCCC-TTSCC-SCSSCEEEBTT-TCBEEET
T ss_pred             CEEe-ECCCc-cCCCcEEEcCC-CCCcCcC
Confidence            3445 67654 34678999998 9999993

>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}

Probab=96.59  E-value=0.0013  Score=36.72  Aligned_cols=23  Identities=30%  Similarity=0.768  Sum_probs=18.0

Q ss_pred             ccccccccCCceEEecccccceeeC
Q psy1385          45 ICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        45 ~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      +|++ ..|+..-|.|+. |+.|||-
T Consensus         8 ~C~~-~~~~~~MI~Cd~-C~~W~H~   30 (52)
T 3o7a_A            8 FCMK-PFAGRPMIECNE-CHTWIHL   30 (52)
T ss_dssp             TTCC-BCTTCCEEECTT-TCCEEET
T ss_pred             EeCC-cCCCCCEEEcCC-CCccccc
Confidence            6765 344568999998 9999993

>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}

Probab=96.57  E-value=0.0026  Score=38.11  Aligned_cols=33  Identities=21%  Similarity=0.525  Sum_probs=26.3

Q ss_pred             CCCCCCcccccccccc-ccCCceEEecccccceee
Q psy1385          35 PNAPPIYPCGICHKEV-HDNDQAILCESGCNFWYH   68 (69)
Q Consensus        35 ~~s~~~ypCG~C~~eV-~D~ddAI~CE~~C~~WFH   68 (69)
                      +.......|.+|.+.- .++++-|+|++ |+.|||
T Consensus        11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD~-C~~~~H   44 (71)
T 2ku3_A           11 SLIDEDAVCSICMDGESQNSNVILFCDM-CNLAVH   44 (71)
T ss_dssp             CCCCSSCSCSSSCCCCCCSSSCEEECSS-SCCEEE
T ss_pred             cCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCccc
Confidence            3455677899998764 56788899996 999999

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=96.47  E-value=0.0016  Score=35.67  Aligned_cols=25  Identities=40%  Similarity=1.034  Sum_probs=20.3

Q ss_pred             cccccccccccCCceEEecccccceee
Q psy1385          42 PCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        42 pCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      .|.+|++.- |.++-|+|+. |++|||
T Consensus         2 ~C~vC~~~~-~~~~ll~Cd~-C~~~~H   26 (51)
T 1f62_A            2 RCKVCRKKG-EDDKLILCDE-CNKAFH   26 (51)
T ss_dssp             CCTTTCCSS-CCSCCEECTT-TCCEEC
T ss_pred             CCCCCCCCC-CCCCEEECCC-CChhhC
Confidence            388888753 5678999996 999999

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=96.34  E-value=0.0039  Score=35.44  Aligned_cols=32  Identities=25%  Similarity=0.691  Sum_probs=25.1

Q ss_pred             CCCCcccccccccc-ccCCceEEecccccceeeC
Q psy1385          37 APPIYPCGICHKEV-HDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        37 s~~~ypCG~C~~eV-~D~ddAI~CE~~C~~WFHR   69 (69)
                      +.....|.+|.+.- .++++-|+|+. |+.|||.
T Consensus         3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~-C~~~~H~   35 (66)
T 2yt5_A            3 SGSSGVCTICQEEYSEAPNEMVICDK-CGQGYHQ   35 (66)
T ss_dssp             CCCCCCBSSSCCCCCBTTBCEEECSS-SCCEEET
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCC-CChHHHh
Confidence            45567899999854 44678889986 9999994

>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}

Probab=96.26  E-value=0.0035  Score=36.53  Aligned_cols=26  Identities=42%  Similarity=1.002  Sum_probs=19.7

Q ss_pred             cccccccccccCCceEEecc-cccceeeC
Q psy1385          42 PCGICHKEVHDNDQAILCES-GCNFWYHR   69 (69)
Q Consensus        42 pCG~C~~eV~D~ddAI~CE~-~C~~WFHR   69 (69)
                      -| +|++.+ |+..-|.|++ -|+.|||-
T Consensus        12 ~C-~C~~~~-~~g~mI~CD~~~C~~W~H~   38 (68)
T 2rsd_A           12 RC-ICSSTM-VNDSMIQCEDQRCQVWQHL   38 (68)
T ss_dssp             CC-TTCCCS-CCSCEEECSCTTTCEEEET
T ss_pred             Ee-ECCCCc-CCCCEEEECCCCCCCeEch
Confidence            35 787654 3467999996 79999993

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.93  E-value=0.0075  Score=33.82  Aligned_cols=29  Identities=28%  Similarity=0.708  Sum_probs=23.1

Q ss_pred             CCCCCccccccccccccCCceEEecccccceeeC
Q psy1385          36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        36 ~s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      .+.....|.+|++.    .+-|.|+. |..|||.
T Consensus         5 ~~~~~~~C~vC~~~----g~ll~Cd~-C~~~~H~   33 (56)
T 2yql_A            5 SSGHEDFCSVCRKS----GQLLMCDT-CSRVYHL   33 (56)
T ss_dssp             CCSSCCSCSSSCCS----SCCEECSS-SSCEECS
T ss_pred             cCCCCCCCccCCCC----CeEEEcCC-CCcceEC
Confidence            34556679999974    58999996 9999994

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=95.88  E-value=0.0048  Score=37.97  Aligned_cols=31  Identities=23%  Similarity=0.596  Sum_probs=24.9

Q ss_pred             CCCCccccccccc-cccCCceEEecccccceee
Q psy1385          37 APPIYPCGICHKE-VHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        37 s~~~ypCG~C~~e-V~D~ddAI~CE~~C~~WFH   68 (69)
                      ....-.|.+|... ..|+++-|+|+. |+.|||
T Consensus        22 ~~~~~~C~vC~~~~s~~~~~ll~CD~-C~~~fH   53 (88)
T 2l43_A           22 IDEDAVCSICMDGESQNSNVILFCDM-CNLAVH   53 (88)
T ss_dssp             CCCCCCCSSCCSSSSCSEEEEEECSS-SCCCCC
T ss_pred             CCCCCcCCcCCCCCCCCCCCEEECCC-CCchhh
Confidence            3566789999975 356678899996 999999

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=95.84  E-value=0.0098  Score=34.13  Aligned_cols=27  Identities=30%  Similarity=0.762  Sum_probs=22.0

Q ss_pred             CCCCccccccccccccCCceEEecccccceee
Q psy1385          37 APPIYPCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        37 s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      +...-.|.+|++    ..+-|.|+. |.+|||
T Consensus         8 ~~~~~~C~vC~~----~g~ll~CD~-C~~~fH   34 (61)
T 2l5u_A            8 TDHQDYCEVCQQ----GGEIILCDT-CPRAYH   34 (61)
T ss_dssp             SCCCSSCTTTSC----CSSEEECSS-SSCEEE
T ss_pred             CCCCCCCccCCC----CCcEEECCC-CChhhh
Confidence            445667999987    368999996 999999

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=95.70  E-value=0.0093  Score=35.22  Aligned_cols=24  Identities=29%  Similarity=0.805  Sum_probs=19.9

Q ss_pred             CccccccccccccCCceEEecccccceee
Q psy1385          40 IYPCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        40 ~ypCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      .-.|.+|+    |.++.|.|+. |++|||
T Consensus        12 ~~~C~vC~----~~~~ll~Cd~-C~~~~H   35 (66)
T 2lri_C           12 GARCGVCG----DGTDVLRCTH-CAAAFH   35 (66)
T ss_dssp             TCCCTTTS----CCTTCEECSS-SCCEEC
T ss_pred             CCCcCCCC----CCCeEEECCC-CCCcee
Confidence            44599997    4567999997 999999

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.62  E-value=0.011  Score=36.56  Aligned_cols=31  Identities=26%  Similarity=0.731  Sum_probs=24.0

Q ss_pred             CCCCccccccccccccCCceEEecccccceeeC
Q psy1385          37 APPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        37 s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      ......|.+|++.- |.++-|+|+. |..|||.
T Consensus        13 ~~~~~~C~vC~~~~-~~~~ll~CD~-C~~~~H~   43 (92)
T 2e6r_A           13 FIDSYICQVCSRGD-EDDKLLFCDG-CDDNYHI   43 (92)
T ss_dssp             CCCCCCCSSSCCSG-GGGGCEECTT-TCCEECS
T ss_pred             ccCCCCCccCCCcC-CCCCEEEcCC-CCchhcc
Confidence            34456799998753 4578999997 9999994

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=95.46  E-value=0.012  Score=34.04  Aligned_cols=27  Identities=22%  Similarity=0.630  Sum_probs=21.8

Q ss_pred             CCCccccccccccccCCceEEecccccceeeC
Q psy1385          38 PPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        38 ~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      ...-.|.+|+.    ..+-|.|+. |.+|||.
T Consensus         6 ~~~~~C~vC~~----~g~ll~CD~-C~~~fH~   32 (66)
T 1xwh_A            6 KNEDECAVCRD----GGELICCDG-CPRAFHL   32 (66)
T ss_dssp             SCCCSBSSSSC----CSSCEECSS-CCCEECT
T ss_pred             CCCCCCccCCC----CCCEEEcCC-CChhhcc
Confidence            45667999985    368999996 9999994

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=95.27  E-value=0.01  Score=45.87  Aligned_cols=32  Identities=38%  Similarity=1.074  Sum_probs=24.7

Q ss_pred             CCCCCCCccccccccccccCCceEEecccccceee
Q psy1385          34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        34 ~~~s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      +.++...| | +|++...++..-|.|+. |+.|||
T Consensus        32 ~~~~~~~y-C-~C~~~~d~~~~MIqCd~-C~~WfH   63 (488)
T 3kv5_D           32 PPPPPPVY-C-VCRQPYDVNRFMIECDI-CKDWFH   63 (488)
T ss_dssp             CCCCCCEE-T-TTTEECCTTSCEEEBTT-TCCEEE
T ss_pred             cCCCCCeE-E-eCCCcCCCCCCeEEccC-CCCcee
Confidence            34455555 3 99887655788999997 999999

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=94.73  E-value=0.024  Score=32.04  Aligned_cols=26  Identities=31%  Similarity=0.784  Sum_probs=20.9

Q ss_pred             CCccccccccccccCCceEEecccccceeeC
Q psy1385          39 PIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        39 ~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      ..-.|.+|++.    .+-|.|+. |..|||.
T Consensus         4 ~~~~C~vC~~~----g~ll~Cd~-C~~~fH~   29 (60)
T 2puy_A            4 HEDFCSVCRKS----GQLLMCDT-CSRVYHL   29 (60)
T ss_dssp             CCSSCTTTCCC----SSCEECSS-SSCEECG
T ss_pred             CCCCCcCCCCC----CcEEEcCC-CCcCEEC
Confidence            34579999873    58999996 9999993

>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*

Probab=94.25  E-value=0.029  Score=35.29  Aligned_cols=25  Identities=20%  Similarity=0.677  Sum_probs=18.5

Q ss_pred             ccccccccccccCCceEEeccccc---ceeeC
Q psy1385          41 YPCGICHKEVHDNDQAILCESGCN---FWYHR   69 (69)
Q Consensus        41 ypCG~C~~eV~D~ddAI~CE~~C~---~WFHR   69 (69)
                      .-| +|++.  ++.+-|.|+. |+   .|||-
T Consensus        27 ~yC-iC~~~--~~g~MI~CD~-c~C~~eWfH~   54 (90)
T 2jmi_A           27 VYC-FCRNV--SYGPMVACDN-PACPFEWFHY   54 (90)
T ss_dssp             CCS-TTTCC--CSSSEECCCS-SSCSCSCEET
T ss_pred             cEE-EeCCC--CCCCEEEecC-CCCccccCcC
Confidence            345 99864  3357999998 77   89993

>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B

Probab=94.19  E-value=0.024  Score=33.49  Aligned_cols=25  Identities=28%  Similarity=1.018  Sum_probs=19.5

Q ss_pred             cccccccccccCCceEEecccccceee
Q psy1385          42 PCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        42 pCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      .|.+|++. .|.++-|+|++ |.+|||
T Consensus        20 ~C~~C~~~-~~~~~ll~CD~-C~~~yH   44 (70)
T 3asl_A           20 ACHLCGGR-QDPDKQLMCDE-CDMAFH   44 (70)
T ss_dssp             SBTTTCCC-SCGGGEEECTT-TCCEEE
T ss_pred             CCcCCCCc-CCCCCEEEcCC-CCCcee
Confidence            56677764 35678999996 999999

>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}

Probab=94.11  E-value=0.024  Score=32.95  Aligned_cols=22  Identities=23%  Similarity=0.696  Sum_probs=17.4

Q ss_pred             ccccccccCCceEEeccccc---ceeeC
Q psy1385          45 ICHKEVHDNDQAILCESGCN---FWYHR   69 (69)
Q Consensus        45 ~C~~eV~D~ddAI~CE~~C~---~WFHR   69 (69)
                      +|++.  ++.+-|.|+. |+   .|||-
T Consensus        15 ~C~~~--~~g~MI~CD~-c~C~~~WfH~   39 (62)
T 2g6q_A           15 LCNQV--SYGEMIGCDN-EQCPIEWFHF   39 (62)
T ss_dssp             TTTEE--CCSEEEECSC-TTCSSCEEET
T ss_pred             ECCCC--CCCCeeeeeC-CCCCcccEec
Confidence            89874  3468999998 66   99993

>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A

Probab=93.95  E-value=0.03  Score=34.94  Aligned_cols=26  Identities=27%  Similarity=0.861  Sum_probs=21.9

Q ss_pred             cccccccccccCCceEEecccccceee
Q psy1385          42 PCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        42 pCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      .|.+|++.-.|+++.|+|+. |.++||
T Consensus        63 ~C~vC~~~~~~~~~ll~Cd~-C~~~yH   88 (112)
T 3v43_A           63 TCSSCRDQGKNADNMLFCDS-CDRGFH   88 (112)
T ss_dssp             CBTTTCCCCCTTCCCEECTT-TCCEEC
T ss_pred             ccccccCcCCCccceEEcCC-CCCeee
Confidence            58888876566778999998 999999

>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*

Probab=93.91  E-value=0.028  Score=32.22  Aligned_cols=23  Identities=30%  Similarity=0.949  Sum_probs=17.1

Q ss_pred             ccccccccCCceEEecc-ccc-ceeeC
Q psy1385          45 ICHKEVHDNDQAILCES-GCN-FWYHR   69 (69)
Q Consensus        45 ~C~~eV~D~ddAI~CE~-~C~-~WFHR   69 (69)
                      +|++.  ++.+-|.|+. .|. .|||-
T Consensus        14 ~C~~~--~~g~mi~CD~cdC~~~wfH~   38 (60)
T 2vnf_A           14 LCHQV--SYGEMIGCDNPDCSIEWFHF   38 (60)
T ss_dssp             TTTEE--CCSEEEECSCTTCSSCEEET
T ss_pred             ECCCc--CCCCEEEeCCCCCCCceEeh
Confidence            89875  3468999998 244 89993

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=93.79  E-value=0.042  Score=36.24  Aligned_cols=26  Identities=23%  Similarity=0.620  Sum_probs=20.4

Q ss_pred             CCccccccccccccCCceEEecccccceeeC
Q psy1385          39 PIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        39 ~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      ..--|..|+.    ..+.|.|+. |.+|||.
T Consensus         3 ~~~~C~~C~~----~g~ll~Cd~-C~~~~H~   28 (184)
T 3o36_A            3 NEDWCAVCQN----GGELLCCEK-CPKVFHL   28 (184)
T ss_dssp             SCSSCTTTCC----CSSCEECSS-SSCEECT
T ss_pred             CCCccccCCC----CCeeeecCC-CCcccCc
Confidence            3445999984    467899998 9999994

>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*

Probab=93.23  E-value=0.054  Score=33.97  Aligned_cols=26  Identities=31%  Similarity=0.864  Sum_probs=20.5

Q ss_pred             cccccccccccCCceEEecccccceeeC
Q psy1385          42 PCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        42 pCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      .|.+|++.- |+++-|+|+. |.+|||.
T Consensus        60 ~C~~C~~~~-~~~~ll~Cd~-C~~~yH~   85 (114)
T 2kwj_A           60 SCILCGTSE-NDDQLLFCDD-CDRGYHM   85 (114)
T ss_dssp             CCTTTTCCT-TTTTEEECSS-SCCEEET
T ss_pred             ccCcccccC-CCCceEEcCC-CCccccc
Confidence            588887753 4578899996 9999994

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=93.12  E-value=0.039  Score=42.55  Aligned_cols=24  Identities=25%  Similarity=0.703  Sum_probs=20.2

Q ss_pred             cccccccccCCceEEecccccceee
Q psy1385          44 GICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        44 G~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      .+|++...++..-|.|+. |+-|||
T Consensus         8 CiC~~~~d~~~~MIqCD~-C~~WfH   31 (447)
T 3kv4_A            8 CLCRLPYDVTRFMIECDM-CQDWFH   31 (447)
T ss_dssp             TTTTEECCTTSCEEECTT-TCCEEE
T ss_pred             EeCCCcCCCCCCeEEcCC-CCcccc
Confidence            488876655788999997 999999

>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*

Probab=92.92  E-value=0.051  Score=31.20  Aligned_cols=23  Identities=30%  Similarity=0.923  Sum_probs=17.2

Q ss_pred             ccccccccCCceEEecc-ccc-ceeeC
Q psy1385          45 ICHKEVHDNDQAILCES-GCN-FWYHR   69 (69)
Q Consensus        45 ~C~~eV~D~ddAI~CE~-~C~-~WFHR   69 (69)
                      +|++.  ++.+-|.|+. .|. .|||-
T Consensus        13 ~C~~~--~~g~mi~CD~~~C~~~wfH~   37 (59)
T 3c6w_A           13 LCHQV--SYGEMIGCDNPDCPIEWFHF   37 (59)
T ss_dssp             TTTEE--CCSEEEECSCTTCSSCEEET
T ss_pred             ECCCC--CCCCeeEeeCCCCCCCCEec
Confidence            89875  3468999998 355 69993

>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.82  E-value=0.089  Score=31.14  Aligned_cols=21  Identities=24%  Similarity=0.817  Sum_probs=16.3

Q ss_pred             ccccccccCCceEEeccccc---ceee
Q psy1385          45 ICHKEVHDNDQAILCESGCN---FWYH   68 (69)
Q Consensus        45 ~C~~eV~D~ddAI~CE~~C~---~WFH   68 (69)
                      +|.+.  ++.+-|.|+. |+   .|||
T Consensus        10 ~C~~~--~~g~MI~CD~-cdC~~~WfH   33 (70)
T 1x4i_A           10 ICNQV--SYGEMVGCDN-QDCPIEWFH   33 (70)
T ss_dssp             TTSCC--CCSSEECCSC-TTCSCCCEE
T ss_pred             EcCCC--CCCCEeEeCC-CCCCccCCc
Confidence            57664  4558999999 64   8999

>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.79  E-value=0.076  Score=32.05  Aligned_cols=27  Identities=33%  Similarity=0.956  Sum_probs=21.5

Q ss_pred             CccccccccccccCCceEEecccccceee
Q psy1385          40 IYPCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        40 ~ypCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      .-.|.+|++. .|.++-|+|+. |+.+||
T Consensus        26 ~c~C~vC~~~-~~~~~ll~CD~-C~~~yH   52 (77)
T 2e6s_A           26 SCSCRVCGGK-HEPNMQLLCDE-CNVAYH   52 (77)
T ss_dssp             SSSCSSSCCC-CCSTTEEECSS-SCCEEE
T ss_pred             CCCCcCcCCc-CCCCCEEEcCC-CCcccc
Confidence            3478888864 35678999996 999999

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=92.77  E-value=0.053  Score=31.00  Aligned_cols=27  Identities=22%  Similarity=0.666  Sum_probs=21.3

Q ss_pred             CCCccccccccccccCCceEEecccccceeeC
Q psy1385          38 PPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        38 ~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      .....|.+|++    ..+-|.|+. |.++||.
T Consensus         7 ~~~~~C~vC~~----~g~ll~Cd~-C~~~fH~   33 (61)
T 1mm2_A            7 HHMEFCRVCKD----GGELLCCDT-CPSSYHI   33 (61)
T ss_dssp             SSCSSCTTTCC----CSSCBCCSS-SCCCBCS
T ss_pred             CCCCcCCCCCC----CCCEEEcCC-CCHHHcc
Confidence            34556999985    468899997 9999994

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.36  E-value=0.19  Score=29.86  Aligned_cols=36  Identities=25%  Similarity=0.492  Sum_probs=24.8

Q ss_pred             CCCCCCCCCCccccccccccccCCceEEeccccc-----ceeeC
Q psy1385          31 NPQNPNAPPIYPCGICHKEVHDNDQAILCESGCN-----FWYHR   69 (69)
Q Consensus        31 n~q~~~s~~~ypCG~C~~eV~D~ddAI~CE~~C~-----~WFHR   69 (69)
                      ......+...-.|.||..+..+++..|   ..|+     .|||+
T Consensus         6 s~~s~~~~~~~~C~IC~~~~~~~~~l~---~pC~C~Gs~h~fH~   46 (80)
T 2d8s_A            6 SGTSITPSSQDICRICHCEGDDESPLI---TPCHCTGSLHFVHQ   46 (80)
T ss_dssp             CCCCCCCTTSCCCSSSCCCCCSSSCEE---CSSSCCSSSCCEET
T ss_pred             CCCCCCCCCCCCCeEcCccccCCCeeE---eccccCCcCCeeCH
Confidence            344444555678999999887655543   5675     89996

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=92.29  E-value=0.054  Score=36.49  Aligned_cols=24  Identities=25%  Similarity=0.710  Sum_probs=19.0

Q ss_pred             ccccccccccccCCceEEecccccceeeC
Q psy1385          41 YPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        41 ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      --|..|+.    ..+.|.|++ |.+|||-
T Consensus         8 ~~C~~C~~----~g~ll~Cd~-C~~~~H~   31 (207)
T 3u5n_A            8 DWCAVCQN----GGDLLCCEK-CPKVFHL   31 (207)
T ss_dssp             SSBTTTCC----CEEEEECSS-SSCEECT
T ss_pred             CCCCCCCC----CCceEEcCC-CCCccCC
Confidence            44999984    456888988 9999993

>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*

Probab=92.15  E-value=0.12  Score=33.16  Aligned_cols=29  Identities=24%  Similarity=0.501  Sum_probs=22.3

Q ss_pred             CCCCccccccccccccCCceEEecc-cccceeeC
Q psy1385          37 APPIYPCGICHKEVHDNDQAILCES-GCNFWYHR   69 (69)
Q Consensus        37 s~~~ypCG~C~~eV~D~ddAI~CE~-~C~~WFHR   69 (69)
                      .....-|-.|+    |..+.|.|+. +|.+|||-
T Consensus        12 ~~~~~~C~~C~----~~G~ll~CD~~~Cp~~fH~   41 (107)
T 4gne_A           12 QMHEDYCFQCG----DGGELVMCDKKDCPKAYHL   41 (107)
T ss_dssp             CSSCSSCTTTC----CCSEEEECCSTTCCCEECT
T ss_pred             CCCCCCCCcCC----CCCcEeEECCCCCCccccc
Confidence            34455688888    4578999995 69999993

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=91.73  E-value=0.34  Score=30.38  Aligned_cols=26  Identities=31%  Similarity=0.903  Sum_probs=18.4

Q ss_pred             ccccccccccccCCceEEecc-ccc-ceeeC
Q psy1385          41 YPCGICHKEVHDNDQAILCES-GCN-FWYHR   69 (69)
Q Consensus        41 ypCG~C~~eV~D~ddAI~CE~-~C~-~WFHR   69 (69)
                      .-| +|++.-  +.+-|.|+. .|. .|||-
T Consensus        37 ~yC-iC~~~~--~g~MI~CD~~dC~~~WfH~   64 (91)
T 1weu_A           37 TYC-LCHQVS--YGEMIGCDNPDCSIEWFHF   64 (91)
T ss_dssp             BCS-TTCCBC--CSCCCCCSCSSCSCCCCCS
T ss_pred             cEE-ECCCCC--CCCEeEecCCCCCCCCEec
Confidence            335 998753  468999998 355 79993

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=91.60  E-value=0.12  Score=31.70  Aligned_cols=26  Identities=23%  Similarity=0.806  Sum_probs=19.8

Q ss_pred             cccccccccccCCceEEecccccceeeC
Q psy1385          42 PCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        42 pCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      .|.+|++.- |++..|+|.. |++|||.
T Consensus        56 ~C~~C~~~~-~~~~ll~Cd~-C~~~yH~   81 (111)
T 2ysm_A           56 VCQNCKQSG-EDSKMLVCDT-CDKGYHT   81 (111)
T ss_dssp             CCTTTCCCS-CCTTEEECSS-SCCEEEG
T ss_pred             cccccCccC-CCCCeeECCC-CCcHHhH
Confidence            477777653 3467999997 9999994

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=91.46  E-value=0.25  Score=29.26  Aligned_cols=25  Identities=32%  Similarity=0.984  Sum_probs=18.0

Q ss_pred             cccccccccccCCceEEecc-ccc-ceeeC
Q psy1385          42 PCGICHKEVHDNDQAILCES-GCN-FWYHR   69 (69)
Q Consensus        42 pCG~C~~eV~D~ddAI~CE~-~C~-~WFHR   69 (69)
                      -| +|++.  ++.+-|.|+. .|. .|||-
T Consensus        18 ~C-~C~~~--~~g~MI~CD~~~C~~~wfH~   44 (71)
T 1wen_A           18 YC-LCHQV--SYGEMIGCDNPDCSIEWFHF   44 (71)
T ss_dssp             CS-TTCCC--SCSSEECCSCSSCSCCCEET
T ss_pred             EE-ECCCC--CCCCEeEeeCCCCCCccEec
Confidence            35 88774  2368999998 466 69993

>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}

Probab=90.55  E-value=0.14  Score=31.01  Aligned_cols=26  Identities=27%  Similarity=0.972  Sum_probs=19.3

Q ss_pred             ccccccccccccCCceEEecccccceee
Q psy1385          41 YPCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        41 ypCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      ..|-+|++. .|.++.|+|+. |.++||
T Consensus        27 C~C~vC~~~-~d~~~ll~CD~-C~~~yH   52 (77)
T 3shb_A           27 CACHLCGGR-QDPDKQLMCDE-CDMAFH   52 (77)
T ss_dssp             TSBTTTCCC-SCGGGEEECTT-TCCEEE
T ss_pred             CcCCccCCC-CCCcceeEeCC-CCCccC
Confidence            356666643 35578899997 999999

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=90.44  E-value=0.34  Score=25.03  Aligned_cols=31  Identities=23%  Similarity=0.494  Sum_probs=23.9

Q ss_pred             CCCccccccccccccCCceEEecccccceeeC
Q psy1385          38 PPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        38 ~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      ...+.|.||.+++.+.++.+.... |.-.||+
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~   33 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHR   33 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECT-TSCEEET
T ss_pred             CCCCcCcccChhhcCCCcCeEecC-CCCcccH
Confidence            456889999999988766666554 8888885

>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A

Probab=89.49  E-value=0.18  Score=35.32  Aligned_cols=24  Identities=13%  Similarity=0.347  Sum_probs=18.4

Q ss_pred             cccccccccCCceEEecccccceee
Q psy1385          44 GICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        44 G~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      ..|+++=.-+..-++|.. |..|||
T Consensus         8 CYCG~~~~~~~~mLqC~~-C~qWFH   31 (177)
T 3rsn_A            8 VDEENGRQLGEVELQCGI-CTKWFT   31 (177)
T ss_dssp             ---CTTCCTTSCEEECTT-TCCEEE
T ss_pred             EEcCCCCCCCceeEeecc-ccceec
Confidence            367776666788999999 999999

>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}

Probab=89.41  E-value=0.18  Score=30.82  Aligned_cols=26  Identities=15%  Similarity=0.181  Sum_probs=17.2

Q ss_pred             ccccccccccCCceEEecccccceeeC
Q psy1385          43 CGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        43 CG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      |+.|...-..++..|+|.. |+.|||.
T Consensus        62 c~~c~~~~~~~~~m~~C~~-C~~~~H~   87 (117)
T 4bbq_A           62 VDQNEETQDFEKKLMECCI-CNEIVHP   87 (117)
T ss_dssp             BCCHHHHCCGGGSCEEETT-TCCEECG
T ss_pred             ccccccccccCcceEEeee-cCCeEEC
Confidence            3444333333456789999 9999994

>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2

Probab=88.87  E-value=0.3  Score=29.65  Aligned_cols=29  Identities=24%  Similarity=0.672  Sum_probs=22.9

Q ss_pred             Ccccccccccccc-CCceEEecccccceeeC
Q psy1385          40 IYPCGICHKEVHD-NDQAILCESGCNFWYHR   69 (69)
Q Consensus        40 ~ypCG~C~~eV~D-~ddAI~CE~~C~~WFHR   69 (69)
                      ...|.+|++.-.+ +++-|+|+. |+..||.
T Consensus        16 ~~~C~vC~~~~~~~~~~ll~CD~-C~~~yH~   45 (88)
T 1wev_A           16 GLACVVCRQMTVASGNQLVECQE-CHNLYHQ   45 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSS-SCCEEET
T ss_pred             CCcCCCCCCCCCCCCCceEECCC-CCCeEcC
Confidence            4579999986443 467899997 9999994

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=88.76  E-value=0.11  Score=31.40  Aligned_cols=28  Identities=25%  Similarity=0.623  Sum_probs=21.9

Q ss_pred             CCCCcccccccccccc-CCceEEecccccc
Q psy1385          37 APPIYPCGICHKEVHD-NDQAILCESGCNF   65 (69)
Q Consensus        37 s~~~ypCG~C~~eV~D-~ddAI~CE~~C~~   65 (69)
                      ..-.|.|+.|+.++.- +.|+|.|-. |..
T Consensus        25 ~~v~Y~C~~CG~~~e~~~~d~irCp~-CG~   53 (70)
T 1twf_L           25 ATLKYICAECSSKLSLSRTDAVRCKD-CGH   53 (70)
T ss_dssp             CCCCEECSSSCCEECCCTTSTTCCSS-SCC
T ss_pred             ceEEEECCCCCCcceeCCCCCccCCC-CCc
Confidence            4678999999999443 478999987 754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=88.31  E-value=0.51  Score=24.41  Aligned_cols=31  Identities=23%  Similarity=0.532  Sum_probs=23.4

Q ss_pred             CCCccccccccccccCCceEEecccccceeeC
Q psy1385          38 PPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        38 ~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      +....|.||.+++.+++..+... .|.-.||+
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~   33 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLP-RCGHGFHA   33 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECS-SSCCEECT
T ss_pred             CCCCcCccCCccccCCCceEECC-CCCCcccH
Confidence            34578999999998877766544 38888885

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=87.68  E-value=0.3  Score=39.00  Aligned_cols=17  Identities=47%  Similarity=1.050  Sum_probs=14.3

Q ss_pred             ccCCceEEecccccceee
Q psy1385          51 HDNDQAILCESGCNFWYH   68 (69)
Q Consensus        51 ~D~ddAI~CE~~C~~WFH   68 (69)
                      +++...|.|+. |+-|||
T Consensus        53 n~~~~mI~CD~-C~~WfH   69 (528)
T 3pur_A           53 KNDFQWIGCDS-CQTWYH   69 (528)
T ss_dssp             TSTTSEEECTT-TCCEEE
T ss_pred             CcCCCEEECCC-CCcCCC
Confidence            34568899996 999999

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=87.15  E-value=0.29  Score=35.23  Aligned_cols=27  Identities=26%  Similarity=0.907  Sum_probs=19.5

Q ss_pred             ccccccccccccCCceEEecccccceeeC
Q psy1385          41 YPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        41 ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      ..|.+|++. .|.++-|+|.+ |+.+||-
T Consensus       175 c~C~vC~~~-~~~~~lL~CD~-C~~~yH~  201 (226)
T 3ask_A          175 CACHLCGGR-QDPDKQLMCDE-CDMAFHI  201 (226)
T ss_dssp             TSCSSSCCC-CC--CCEECSS-SCCEECS
T ss_pred             CCCcCCCCC-CCCCCeEEcCC-CCcceeC
Confidence            358888874 34578899987 9999993

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=85.19  E-value=0.46  Score=28.55  Aligned_cols=26  Identities=27%  Similarity=0.616  Sum_probs=21.1

Q ss_pred             CCCccccccccccccC-CceEEeccccc
Q psy1385          38 PPIYPCGICHKEVHDN-DQAILCESGCN   64 (69)
Q Consensus        38 ~~~ypCG~C~~eV~D~-ddAI~CE~~C~   64 (69)
                      +-.|.|+.|+.+|.-+ .+.|.|.- |.
T Consensus        19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~-CG   45 (63)
T 3h0g_L           19 TMIYLCADCGARNTIQAKEVIRCRE-CG   45 (63)
T ss_dssp             CCCCBCSSSCCBCCCCSSSCCCCSS-SC
T ss_pred             CeEEECCCCCCeeecCCCCceECCC-CC
Confidence            5689999999999654 68899975 54

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=84.27  E-value=0.8  Score=26.65  Aligned_cols=40  Identities=20%  Similarity=0.430  Sum_probs=28.2

Q ss_pred             eeeCCCCCCCCCCccccccccccccCCceEEecccccceeeC
Q psy1385          28 MVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        28 ~~fn~q~~~s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      .+++...........|.||..++.+++..+.  ..|.-.||+
T Consensus        28 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~--l~C~H~Fh~   67 (91)
T 2l0b_A           28 ILVTEDHGAVGQEMCCPICCSEYVKGDVATE--LPCHHYFHK   67 (91)
T ss_dssp             EECCTTCSSSSSCSEETTTTEECCTTCEEEE--ETTTEEEEH
T ss_pred             eeecccccccCCCCCCcccChhhcCCCcEEe--cCCCChHHH
Confidence            3445455556778899999999988765544  348888874

>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}

Probab=82.66  E-value=0.41  Score=32.25  Aligned_cols=23  Identities=30%  Similarity=1.037  Sum_probs=18.4

Q ss_pred             cccccccccccCCceEEecccccceeeC
Q psy1385          42 PCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        42 pCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      .|..|++    .++-|.|++ |.+.||.
T Consensus         4 ~C~~C~~----~g~ll~Cd~-C~~~~H~   26 (189)
T 2ro1_A            4 ICRVCQK----PGDLVMCNQ-CEFCFHL   26 (189)
T ss_dssp             CBTTTCC----CSSCCCCTT-TCCBCCS
T ss_pred             cCccCCC----CCceeECCC-CCchhcc
Confidence            4888884    457888987 9999994

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.59  E-value=2.2  Score=23.22  Aligned_cols=32  Identities=22%  Similarity=0.584  Sum_probs=23.5

Q ss_pred             CCCCCccccccccccccCCceEEecccccceeeC
Q psy1385          36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        36 ~s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      .......|.||.+++.+.+..+..  .|.-.||+
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~--~C~H~f~~   42 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGIC--PCKHAFHR   42 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEE--TTTEEEEH
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEc--CCCCEecH
Confidence            345578899999999887665543  48878884

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=82.01  E-value=2.2  Score=22.23  Aligned_cols=33  Identities=21%  Similarity=0.430  Sum_probs=24.0

Q ss_pred             CCCCCCcccccccccc------------ccCCceEEecccccceee
Q psy1385          35 PNAPPIYPCGICHKEV------------HDNDQAILCESGCNFWYH   68 (69)
Q Consensus        35 ~~s~~~ypCG~C~~eV------------~D~ddAI~CE~~C~~WFH   68 (69)
                      ......|.|..|.+..            +..+....|+. |.+.|-
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~-C~~~f~   48 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNY-CSFDTK   48 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSS-SSCEES
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCC-CCCccC
Confidence            3445679999998753            33567789998 988874

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=80.05  E-value=1.7  Score=26.40  Aligned_cols=32  Identities=22%  Similarity=0.558  Sum_probs=23.7

Q ss_pred             CCCCCccccccccccccCCceEEecccccceeeC
Q psy1385          36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        36 ~s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      .......|.+|+..- |.++-|.|.. |.+.||.
T Consensus         3 ~~~~~~~C~~C~~~g-~~~~ll~C~~-C~~~~H~   34 (111)
T 2ysm_A            3 SGSSGANCAVCDSPG-DLLDQFFCTT-CGQHYHG   34 (111)
T ss_dssp             CCCCCSCBTTTCCCC-CTTTSEECSS-SCCEECT
T ss_pred             CCCCCCCCcCCCCCC-CCcCCeECCC-CCCCcCh
Confidence            345677899998763 3356699965 9999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	69
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	98.5
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	97.77
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	97.76
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	97.69
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	97.11
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	96.74
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	96.64
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	96.5
d2pnxa1	51	Inhibitor of growth protein 4, Ing4 {Homo sapiens	95.47
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	95.41
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	90.03
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	88.76
d1a7ia1	28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	84.44
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	84.08
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	82.12
d1ptqa_	50	Protein kinase C-delta (PKCdelta) {Mouse (Mus musc	80.58

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.50  E-value=4.2e-08  Score=55.19  Aligned_cols=33  Identities=24%  Similarity=0.737  Sum_probs=28.2

Q ss_pred             CCCCCccccccccccccCCceEEecccccceeeC
Q psy1385          36 NAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        36 ~s~~~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      ++.....|.+|++...+++..|.|+. |+.|||.
T Consensus         2 ~~~~~~~C~~C~~~~~~~~~~I~Cd~-C~~w~H~   34 (64)
T d1we9a_           2 SSGSSGQCGACGESYAADEFWICCDL-CEMWFHG   34 (64)
T ss_dssp             CCSSCCCCSSSCCCCCSSSCEEECSS-SCCEEET
T ss_pred             cCCCCCcCcCcCCCCCCCCCEEEcCC-CCccCCc
Confidence            34556799999998888888999997 9999995

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=1.2e-05  Score=46.78  Aligned_cols=27  Identities=37%  Similarity=1.070  Sum_probs=22.4

Q ss_pred             CCccccccccccccCCceEEecccccceee
Q psy1385          39 PIYPCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        39 ~~ypCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      ++| | +|.+...+++..|+|+. |+.|||
T Consensus        12 pv~-C-iC~~~~~~~~~mI~Cd~-C~~W~H   38 (79)
T d1wepa_          12 PVY-C-LCRQPYNVNHFMIECGL-CQDWFH   38 (79)
T ss_dssp             CCC-S-TTSCSCCSSSCEEEBTT-TCCEEE
T ss_pred             CeE-e-ECCCccCCCCcEEECCC-CCCcEe
Confidence            444 4 99987667778999998 999999

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.76  E-value=6.2e-06  Score=46.85  Aligned_cols=27  Identities=26%  Similarity=0.877  Sum_probs=22.7

Q ss_pred             ccccccccccccCCceEEecccccceeeC
Q psy1385          41 YPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        41 ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      .-| +|++...+++..|+|+. |++|||-
T Consensus        17 ~~C-~C~~~~~~~~~mv~Cd~-C~~w~H~   43 (72)
T d1weea_          17 VDC-KCGTKDDDGERMLACDG-CGVWHHT   43 (72)
T ss_dssp             ECC-TTCCCSCCSSCEEECSS-SCEEEET
T ss_pred             EEe-eCCCCcCCCCeEEEeCC-CCCcCch
Confidence            447 89887777788999998 9999993

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=9.9e-06  Score=45.87  Aligned_cols=26  Identities=42%  Similarity=1.241  Sum_probs=20.6

Q ss_pred             CccccccccccccCCceEEecccccceeeC
Q psy1385          40 IYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        40 ~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      +| | +|++. .|+++.|+|+. |+.|||.
T Consensus        17 ~~-C-iC~~~-~~~~~mi~Cd~-C~~w~H~   42 (76)
T d1wema_          17 LY-C-ICRQP-HNNRFMICCDR-CEEWFHG   42 (76)
T ss_dssp             CC-S-TTCCC-CCSSCEEECSS-SCCEEEH
T ss_pred             CE-E-ECCCc-cCCCeEEEECC-CCCcCCc
Confidence            44 6 88865 35678999998 9999993

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00014  Score=42.18  Aligned_cols=29  Identities=24%  Similarity=0.677  Sum_probs=22.6

Q ss_pred             CccccccccccccC-CceEEecccccceeeC
Q psy1385          40 IYPCGICHKEVHDN-DQAILCESGCNFWYHR   69 (69)
Q Consensus        40 ~ypCG~C~~eV~D~-ddAI~CE~~C~~WFHR   69 (69)
                      ..-|.+|.+...++ .+.|+|+. |+.|||-
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~-C~~~~H~   45 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQE-CHNLYHQ   45 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSS-SCCEEET
T ss_pred             cCCccCCCCccCCCCCeEEEcCC-CCCcccc
Confidence            35699998865543 56888997 9999993

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00038  Score=36.95  Aligned_cols=25  Identities=40%  Similarity=1.059  Sum_probs=20.1

Q ss_pred             cccccccccccCCceEEecccccceee
Q psy1385          42 PCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        42 pCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      .|.+|++. .|.++-|+|++ |+.|||
T Consensus         2 ~C~vC~~~-~~~~~~i~Cd~-C~~~~H   26 (51)
T d1f62a_           2 RCKVCRKK-GEDDKLILCDE-CNKAFH   26 (51)
T ss_dssp             CCTTTCCS-SCCSCCEECTT-TCCEEC
T ss_pred             CCcCcCCC-CCCCCEEEcCC-CCCCCC
Confidence            37788764 45678999998 999999

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.64  E-value=0.00083  Score=38.48  Aligned_cols=27  Identities=33%  Similarity=0.947  Sum_probs=20.2

Q ss_pred             CccccccccccccCCceEEecc-cccceee
Q psy1385          40 IYPCGICHKEVHDNDQAILCES-GCNFWYH   68 (69)
Q Consensus        40 ~ypCG~C~~eV~D~ddAI~CE~-~C~~WFH   68 (69)
                      ..-| +|.+... +++.|+|+- .|..|||
T Consensus        16 ~~~C-~C~~~~~-~~~~i~c~c~~C~~W~H   43 (78)
T d1wewa_          16 KVRC-VCGNSLE-TDSMIQCEDPRCHVWQH   43 (78)
T ss_dssp             CCCC-SSCCCCC-CSCEEECSSTTTCCEEE
T ss_pred             ccEe-ECCCccC-CCcEEEEeCCCCCcCCC
Confidence            3456 8987663 467889983 5999999

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00038  Score=38.49  Aligned_cols=22  Identities=32%  Similarity=0.952  Sum_probs=18.8

Q ss_pred             cccccccccccCCceEEecccccceee
Q psy1385          42 PCGICHKEVHDNDQAILCESGCNFWYH   68 (69)
Q Consensus        42 pCG~C~~eV~D~ddAI~CE~~C~~WFH   68 (69)
                      -|.+|.    +..+.|.|+. |..|||
T Consensus        11 ~C~~C~----~~g~lv~Cd~-C~~~~H   32 (61)
T d1mm2a_          11 FCRVCK----DGGELLCCDT-CPSSYH   32 (61)
T ss_dssp             SCTTTC----CCSSCBCCSS-SCCCBC
T ss_pred             CCcCCC----CCCeEEEeCC-CCccCc
Confidence            388997    4678999997 999999

>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Inhibitor of growth protein 4, Ing4
species: Homo sapiens [TaxId: 9606]

Probab=95.47  E-value=0.0035  Score=33.84  Aligned_cols=22  Identities=27%  Similarity=0.780  Sum_probs=16.7

Q ss_pred             ccccccccCCceEEecc--cccceee
Q psy1385          45 ICHKEVHDNDQAILCES--GCNFWYH   68 (69)
Q Consensus        45 ~C~~eV~D~ddAI~CE~--~C~~WFH   68 (69)
                      +|++.  ++++-|.|+.  .|+.|||
T Consensus         6 ~C~~~--~~~~mi~Cd~~~C~~~WfH   29 (51)
T d2pnxa1           6 LCHQV--SYGEMIGCDNPDCSIEWFH   29 (51)
T ss_dssp             TTTEE--CCSEEEECSCTTCSSCEEE
T ss_pred             EcCCC--CCCCEEEEecCCCCCCCEe
Confidence            78764  4567999975  4589999

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0039  Score=35.07  Aligned_cols=24  Identities=29%  Similarity=0.967  Sum_probs=18.8

Q ss_pred             ccccccccccccCCceEEecccccceeeC
Q psy1385          41 YPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        41 ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      -.|.+|++    .++-|.|.+ |.+|||.
T Consensus         8 ~~C~~C~~----~~~ll~Cd~-C~~~~H~   31 (70)
T d1fp0a1           8 TICRVCQK----PGDLVMCNQ-CEFCFHL   31 (70)
T ss_dssp             SCCSSSCS----SSCCEECTT-SSCEECT
T ss_pred             CCCCCCCC----cCEEEECCC-CChhhcc
Confidence            35777763    467999997 9999994

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=90.03  E-value=0.14  Score=27.27  Aligned_cols=29  Identities=24%  Similarity=0.593  Sum_probs=24.1

Q ss_pred             CccccccccccccCCceEEecccccceeeC
Q psy1385          40 IYPCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        40 ~ypCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      ...|.||..++.++|+.+.+.. |.--||+
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~-C~H~Fh~   33 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPR-CGHGFHA   33 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSS-SCCEECT
T ss_pred             CCCCeEECccccCCCEEEEeCC-CCCcccH
Confidence            4569999999999988887755 8888884

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.76  E-value=0.091  Score=30.38  Aligned_cols=30  Identities=17%  Similarity=0.291  Sum_probs=23.8

Q ss_pred             Ccccccccccccc-------------CCceEEecccccceeeC
Q psy1385          40 IYPCGICHKEVHD-------------NDQAILCESGCNFWYHR   69 (69)
Q Consensus        40 ~ypCG~C~~eV~D-------------~ddAI~CE~~C~~WFHR   69 (69)
                      .-.|.||.+++.+             +++.+.+...|.=+||+
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~   67 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHL   67 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECH
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhH
Confidence            4469999998764             35677888899999994

>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=84.44  E-value=0.4  Score=24.30  Aligned_cols=24  Identities=29%  Similarity=0.802  Sum_probs=19.3

Q ss_pred             cccccccccccCCceEEecccccceeeC
Q psy1385          42 PCGICHKEVHDNDQAILCESGCNFWYHR   69 (69)
Q Consensus        42 pCG~C~~eV~D~ddAI~CE~~C~~WFHR   69 (69)
                      .||.|.+-|--- +-|+|++   +-|||
T Consensus         2 kcg~c~ktvy~a-eevqc~g---rsfhk   25 (28)
T d1a7ia1           2 KCGACGRTVYHA-EEVQCDG---RSFHR   25 (28)
T ss_dssp             BCSSSCCBCSST-TEEEETT---EEEES
T ss_pred             ccccccceEeee-eeeeecC---ceecc
Confidence            599999988654 5699998   77886

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.08  E-value=0.24  Score=27.92  Aligned_cols=23  Identities=26%  Similarity=0.810  Sum_probs=15.9

Q ss_pred             ccccccccCCceEEecc-cc-cceeeC
Q psy1385          45 ICHKEVHDNDQAILCES-GC-NFWYHR   69 (69)
Q Consensus        45 ~C~~eV~D~ddAI~CE~-~C-~~WFHR   69 (69)
                      +|.+.  ++++-|+|+. .| +.|||-
T Consensus        20 iC~~~--~~~~~i~c~~~~C~~~wfH~   44 (71)
T d1wesa_          20 LCNQV--SYGEMIGCDNEQCPIEWFHF   44 (71)
T ss_dssp             TTCCC--CCSSEECCSCTTCSCCCEET
T ss_pred             EeCCC--CCCCEEEEECCCCCCcCccC
Confidence            89863  5567777753 46 579993

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.12  E-value=0.29  Score=27.84  Aligned_cols=16  Identities=44%  Similarity=0.980  Sum_probs=13.5

Q ss_pred             CCCCcccccccccccc
Q psy1385          37 APPIYPCGICHKEVHD   52 (69)
Q Consensus        37 s~~~ypCG~C~~eV~D   52 (69)
                      .-.+||||+|.|-..|
T Consensus         3 E~~l~pCG~CgK~Ftd   18 (53)
T d2eppa1           3 EAGILPCGLCGKVFTD   18 (53)
T ss_dssp             CCCCCCCTTTCCCCSC
T ss_pred             ccceeeccccccccCC
Confidence            4568999999998877

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.58  E-value=0.52  Score=24.21  Aligned_cols=28  Identities=25%  Similarity=0.541  Sum_probs=24.0

Q ss_pred             cccccccccccc-CCceEEecccccceeeC
Q psy1385          41 YPCGICHKEVHD-NDQAILCESGCNFWYHR   69 (69)
Q Consensus        41 ypCG~C~~eV~D-~ddAI~CE~~C~~WFHR   69 (69)
                      --|..|.+.+-- ..++..|+. |+.-.|+
T Consensus        12 ~~C~~C~~~i~g~~~qg~~C~~-C~~~~H~   40 (50)
T d1ptqa_          12 TFCDHCGSLLWGLVKQGLKCED-CGMNVHH   40 (50)
T ss_dssp             CBCTTTCCBCCSSSSCEEEETT-TCCEECH
T ss_pred             cCCcccCCcccCcccCcEECCC-CCCeeCh
Confidence            469999999876 568999999 9999884